BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043124
(331 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 256/327 (78%), Positives = 293/327 (89%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDIISWTTMI CYSQNKQFREAL FNEM+ +GI PD+VTMAT++SACAHLGALDLG
Sbjct: 133 MPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLG 192
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIHLY M++GFD+DVYIGSAL+DMYAKCGSLD+SL+VFFKLR+KNLFCWNSIIEGLAVH
Sbjct: 193 KEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVH 252
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EALAMF RM E ++PNGVTFISVL ACTHAGLVEEGR+RFLSM+ +SI PE+EH
Sbjct: 253 GYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEH 312
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL KAGLLEDALEL+RS + +PN+VIWGALLGGCKLHRNL+IA +AVNE +LE
Sbjct: 313 YGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLE 372
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNNSGY TLL+NMYAEV+RW+EV IR MKELG+EK PGSSWIEM+RK++QFAASDKS
Sbjct: 373 PNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKS 432
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
H ASDEIY+ L +LD QLKL+ YVPEL
Sbjct: 433 HLASDEIYTLLVELDGQLKLSGYVPEL 459
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 122/284 (42%), Gaps = 68/284 (23%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY----- 86
M + +SP T ++++ AC+ + L G +H ++ + GFD V++ +ALVD Y
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 87 --------------------------AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
A+ G + + +F ++ +N WN++I+G +
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120
Query: 119 -----------------------------VHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+ EALA+F+ M ++P+ VT +++
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180
Query: 150 SACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
SAC H G ++ G+ L +M G+ + +V ++D+ +K G L+ +L + + +
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDL--DVYIGSALIDMYAKCGSLDKSLVVFFKLR-KK 237
Query: 209 NAVIWGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGYCTLL 250
N W +++ G +H E +A + + ++PN + ++L
Sbjct: 238 NLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVL 281
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/327 (78%), Positives = 291/327 (88%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARDIISWTTMI CYSQNK+FREAL FNEM GISPD+VTMATV+SACAHLGALDLG
Sbjct: 203 MPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+MQ GF++DVYIGSAL+DMYAKCGSLDRSLL+FFKLREKNLFCWNS+IEGLAVH
Sbjct: 263 KEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVH 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EALAMFD+M E ++PNGVTF+SVLSAC HAGL+EEGR+RF SMT +SI P VEH
Sbjct: 323 GYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEH 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLSKAGLLE+AL+LIR+ K +PNAVIWGALL GCKLHRNLEIA +A N+LM+LE
Sbjct: 383 YGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLE 442
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY TLL+NM AEV+RW E KIR+ MKE G+EKRCPGSSWIEME +V+QFAASDKS
Sbjct: 443 PGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKS 502
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
H ASDEIYS L++LD Q+KLA YVPEL
Sbjct: 503 HAASDEIYSLLAELDGQMKLAGYVPEL 529
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 139/315 (44%), Gaps = 68/315 (21%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ + MI + Q+ Q +AL+ + +M + +SP T +++ AC + L
Sbjct: 40 MEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFA 99
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC----------- 109
+H +V + GFD V++ ++LVD Y+ G ++ S+ VF ++ E+++F
Sbjct: 100 EAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRV 159
Query: 110 --------------------WNSIIEGLA--------------------------VHGFA 123
WN++I+G A ++ ++
Sbjct: 160 GDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYS 219
Query: 124 H-----EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPE 177
EAL +F+ M + P+ VT +V+SAC H G ++ G+ + M G+++ +
Sbjct: 220 QNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNL--D 277
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNE 235
V ++D+ +K G L+ +L + + + N W +++ G +H E +A E
Sbjct: 278 VYIGSALIDMYAKCGSLDRSLLMFFKLR-EKNLFCWNSVIEGLAVHGYAEEALAMFDKME 336
Query: 236 LMILEPNNSGYCTLL 250
++PN + ++L
Sbjct: 337 REKIKPNGVTFVSVL 351
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 42/235 (17%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D Y+ + + + +D ++L + ++ N+F +N++I+G +AL ++ +M+
Sbjct: 13 DCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQML 72
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSK 190
NV P TF S++ AC GLV + RF G+ V +VD S
Sbjct: 73 RANVSPTSYTFPSLIKAC---GLVSQ--LRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSS 127
Query: 191 AGLLEDALE-------------------LIRSSKFQP-----------NAVIWGALLGGC 220
G +E+++ L+R N W L+ G
Sbjct: 128 MGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGY 187
Query: 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
R +++A + N+ + + T ++N Y++ R+ E + M + GI
Sbjct: 188 ARLREVDVAELLFNQ---MPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGI 239
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 215/331 (64%), Positives = 275/331 (83%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARDIISWTTM+ CYS+NK+++E + F+++ + G+ PD+VTM TV+SACAHLGAL LG
Sbjct: 199 MPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALG 258
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+HLY++ GFD+DVYIGS+L+DMYAKCGS+D +LLVF+KL+ KNLFCWN II+GLA H
Sbjct: 259 KEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATH 318
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EAL MF M + + PN VTFIS+L+ACTHAG +EEGRR F+SM Y I P+VEH
Sbjct: 319 GYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEH 378
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLSKAGLLEDALE+IR+ +PN+ IWGALL GCKLH+NLEIAHIAV LM+LE
Sbjct: 379 YGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLE 438
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG+ +LL+NMYAE +RW EV KIR MK+LG+EKRCPGSSW+E+ + V+ FAASD
Sbjct: 439 PSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTY 498
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP+ +++ L++LD+QL+LA YVPEL ++L
Sbjct: 499 HPSYSQLHLLLAELDDQLRLAGYVPELGSIL 529
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 107/253 (42%), Gaps = 72/253 (28%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ +WTTMI+ + ++ A F+EM P++
Sbjct: 137 MPERDVFAWTTMISAHVRDGDMASAGRLFDEM------PEK------------------- 171
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+V +A++D Y K G+ + + +F ++ +++ W +++ + +
Sbjct: 172 --------------NVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRN 217
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT----------- 169
E +A+F +I + + P+ VT +V+SAC H G + G+ L +
Sbjct: 218 KRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIG 277
Query: 170 ---------CG---------YSI-TPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
CG Y + T + + C++D L+ G +E+AL + + + +
Sbjct: 278 SSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIR 337
Query: 208 PNAVIWGALLGGC 220
PNAV + ++L C
Sbjct: 338 PNAVTFISILTAC 350
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 15 CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI 74
CYS+ +AL + M + + P + ++++ AC L G +H +V + GFD
Sbjct: 55 CYSE-----QALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDS 109
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
V++ + L++ Y+ G + S VF + E+++F W ++I G A +FD M
Sbjct: 110 HVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMP 169
Query: 135 YENV 138
+NV
Sbjct: 170 EKNV 173
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/326 (67%), Positives = 268/326 (82%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMITCYSQNKQ+++AL ++EM+ +GI PD+VTM+TV SACAH+GAL+LG
Sbjct: 261 MPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELG 320
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH YVM G ++DVYIGSALVDMYAKCGSLD SLL+FFKL +KNL+CWN++IEGLAVH
Sbjct: 321 KEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVH 380
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +AL MF M E + PNGVTFIS+LSACTHAGLV+EGR RFLSMT Y I P++ H
Sbjct: 381 GYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRH 440
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+LSK+G L +ALELI+S +F+PN++IWGALL GCKLH N EIA AV +LMILE
Sbjct: 441 YGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILE 500
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG+ LL++MYAE W EV IR MKE G+EK+ PGSSWIE+E ++QF+AS S
Sbjct: 501 PMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADS 560
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP SD+IY L++LD QLKLA Y+ E
Sbjct: 561 HPDSDKIYFILTELDGQLKLAGYILE 586
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
++ S + P T ++++ AC + A++LG+ +H ++ + GF+ +++ +ALVD Y+K
Sbjct: 129 LEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI 188
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L + VF ++ E++ F W +++ LA G A +F+ M E N T+ +++
Sbjct: 189 LSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEM----PERNTATWNTMIDG 244
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQP 208
T G VE F M T ++ + M+ S+ +DAL + +R + P
Sbjct: 245 YTRLGNVESAELLFNQMP-----TKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIP 299
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ V + C AHI EL
Sbjct: 300 DEVTMSTVASAC--------AHIGALEL 319
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D ++ + S+ + F ++ N+F +N++I+G G+ AL + M+
Sbjct: 70 DCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHML 129
Query: 135 YE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAG 192
E NV P TF S++ ACT VE G+ + G+ V+ +VD SK
Sbjct: 130 EESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQ--TALVDFYSKLE 187
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGG 219
+L +A ++ + +A W A+L
Sbjct: 188 ILSEARKVF-DEMCERDAFAWTAMLSA 213
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/326 (67%), Positives = 268/326 (82%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMITCYSQNKQ+++AL ++EM+ +GI PD+VTM+TV SACAH+GAL+LG
Sbjct: 358 MPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELG 417
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH YVM G ++DVYIGSALVDMYAKCGSLD SLL+FFKL +KNL+CWN++IEGLAVH
Sbjct: 418 KEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVH 477
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +AL MF M E + PNGVTFIS+LSACTHAGLV+EGR RFLSMT Y I P++ H
Sbjct: 478 GYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRH 537
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+LSK+G L +ALELI+S +F+PN++IWGALL GCKLH N EIA AV +LMILE
Sbjct: 538 YGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILE 597
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG+ LL++MYAE W EV IR MKE G+EK+ PGSSWIE+E ++QF+AS S
Sbjct: 598 PMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADS 657
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP SD+IY L++LD QLKLA Y+ E
Sbjct: 658 HPDSDKIYFVLTELDGQLKLAGYILE 683
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 68/284 (23%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY----- 86
++ S + P T ++++ AC + A++LG+ +H ++ + GF+ +++ +ALVD Y
Sbjct: 226 LEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI 285
Query: 87 --------------------------AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
A+ G +D + +F ++ E+N WN++I+G A
Sbjct: 286 LSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARL 345
Query: 121 GFAHEALAMFDRM--------------------------IYENVEPNG-----VTFISVL 149
G A +F++M IY + NG VT +V
Sbjct: 346 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 405
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
SAC H G +E G+ M+ G ++ +V +VD+ +K G L+ +L LI
Sbjct: 406 SACAHIGALELGKEIHHYVMSQGLNL--DVYIGSALVDMYAKCGSLDLSL-LIFFKLTDK 462
Query: 209 NAVIWGALLGGCKLHRNLEIA--HIAVNELMILEPNNSGYCTLL 250
N W A++ G +H E A A+ E + PN + ++L
Sbjct: 463 NLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 506
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D ++ + S+ + F ++ N+F +N++I+G G+ AL + M+
Sbjct: 167 DCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHML 226
Query: 135 YE-NVEPNGVTFISVLSACTHAGLVEEGR 162
E NV P TF S++ ACT VE G+
Sbjct: 227 EESNVLPTSYTFSSLVKACTFMCAVELGQ 255
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/328 (65%), Positives = 265/328 (80%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMI YS+NK++REA+ F +M GI PD+VTM+TV+SACAHLG L++G
Sbjct: 999 MPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 1058
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H+Y +Q GF +DVYIGSALVDMY+KCGSL+R+LLVFF L +KNLFCWNSIIEGLA H
Sbjct: 1059 KEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAH 1118
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA EAL MF +M E+V+PN VTF+SV +ACTHAGLVEEGRR + SM YSI VEH
Sbjct: 1119 GFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEH 1178
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMV L SKAGL+ +ALELI S +F+PNAVIWGALL GC++H+NLEIA IA N+LMILE
Sbjct: 1179 YGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILE 1238
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL++MYAE +RW +V +IR M+ELGIEK CPG+S I ++++ + FAA+DKS
Sbjct: 1239 PMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKS 1298
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H ASDE+ L ++ EQ+ LA YV E E
Sbjct: 1299 HSASDEVCLLLDEIYEQMGLAGYVQETE 1326
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 12/243 (4%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+I YS + + REA F+EM D VT T++SA + +D + + +
Sbjct: 915 TTLIGFYSASGRIREARKVFDEMPER----DDVTWTTMVSAYRQVLDMDSANSLANQMPE 970
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+ + L+D Y + G+L+ + +F ++ K++ W ++I G + + EA+A+
Sbjct: 971 K----NEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAV 1026
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189
F +M+ E + P+ VT +V+SAC H G++E G+ + T +V +VD+ S
Sbjct: 1027 FYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHM-YTVQNGFVLDVYIGSALVDMYS 1085
Query: 190 KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGYC 247
K G LE AL L+ + + N W +++ G H + + A E+ ++PN +
Sbjct: 1086 KCGSLERAL-LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFV 1144
Query: 248 TLL 250
++
Sbjct: 1145 SVF 1147
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 49/225 (21%)
Query: 89 CGSLDR-SLLVFF--KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
C S +R L V F ++++ N+F +N++I+G +L + RM+ ++V P+ T+
Sbjct: 822 CSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTY 881
Query: 146 ISVLSACTHA---------------------------------GLVEEGRRRFLSMTCGY 172
S++ A A G + E R+ F M
Sbjct: 882 SSLVQASAFASGFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERD 941
Query: 173 SI--TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
+ T V Y ++D+ S L E N W L+ G NLE+A
Sbjct: 942 DVTWTTMVSAYRQVLDMDSANSLANQMPE--------KNEATWNCLIDGYTRLGNLELAE 993
Query: 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
N++ + + + T ++N Y+ R+ E + M E GI
Sbjct: 994 SLFNQMPVKDIIS---WTTMINGYSRNKRYREAIAVFYKMMEEGI 1035
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 263/328 (80%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMI YSQNK++REA+ F +M GI PD+VTM+TV+SACAHLG L++G
Sbjct: 247 MPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 306
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H+Y +Q GF +DVYIGSALVDMY+KCGSL+R+LLVFF L +KNLFCWNSIIEGLA H
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAH 366
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA EAL MF +M E+V+PN VTF+SV +ACTHAGLV+EGRR + SM YSI VEH
Sbjct: 367 GFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEH 426
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MV L SKAGL+ +ALELI + +F+PNAVIWGALL GC++H+NL IA IA N+LM+LE
Sbjct: 427 YGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLE 486
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL++MYAE +RW +V +IR M+ELGIEK CPG+S I ++++ + FAA+DKS
Sbjct: 487 PMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKS 546
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H ASDE+ L ++ +Q+ LA YV E E
Sbjct: 547 HSASDEVCLLLDEIYDQMGLAGYVQETE 574
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 112/215 (52%), Gaps = 12/215 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+I YS + REA F+EM D + T++SA + +D + Q
Sbjct: 163 TTLIDFYSATGRIREARKVFDEMPER----DDIAWTTMVSAYRRVLDMDSANSL---ANQ 215
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+ + + + L++ Y G+L+++ +F ++ K++ W ++I+G + + EA+A+
Sbjct: 216 MS-EKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAV 274
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLL 188
F +M+ E + P+ VT +V+SAC H G++E G+ ++ G+ + +V +VD+
Sbjct: 275 FYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVL--DVYIGSALVDMY 332
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G LE AL L+ + + N W +++ G H
Sbjct: 333 SKCGSLERAL-LVFFNLPKKNLFCWNSIIEGLAAH 366
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
LD ++ +++E N+F +N++ +G +L ++ RM+ ++V P+ T+ S++ A
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 135
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
+ A E + + G+ +++ ++D S G + +A ++ + + +
Sbjct: 136 SSFASRFGESLQAHI-WKFGFGFHVKIQ--TTLIDFYSATGRIREARKVFDEMP-ERDDI 191
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254
W ++ + +++ A+ N+ + N L+N Y
Sbjct: 192 AWTTMVSAYRRVLDMDSANSLANQ---MSEKNEATSNCLINGY 231
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 263/328 (80%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMI YSQNK++REA+ F +M GI PD+VTM+TV+SACAHLG L++G
Sbjct: 992 MPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 1051
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H+Y +Q GF +DVYIGSALVDMY+KCGSL+R+LLVFF L +KNLFCWNSIIEGLA H
Sbjct: 1052 KEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAH 1111
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA EAL MF +M E+V+PN VTF+SV +ACTHAGLV+EGRR + SM YSI VEH
Sbjct: 1112 GFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEH 1171
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MV L SKAGL+ +ALELI + +F+PNAVIWGALL GC++H+NL IA IA N+LM+LE
Sbjct: 1172 YGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLE 1231
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL++MYAE +RW +V +IR M+ELGIEK CPG+S I ++++ + FAA+DKS
Sbjct: 1232 PMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKS 1291
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H ASDE+ L ++ +Q+ LA YV E E
Sbjct: 1292 HSASDEVCLLLDEIYDQMGLAGYVQETE 1319
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 112/215 (52%), Gaps = 12/215 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+I YS + REA F+EM D + T++SA + +D + Q
Sbjct: 908 TTLIDFYSATGRIREARKVFDEMPER----DDIAWTTMVSAYRRVLDMDSANSL---ANQ 960
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+ + + + L++ Y G+L+++ +F ++ K++ W ++I+G + + EA+A+
Sbjct: 961 MS-EKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAV 1019
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLL 188
F +M+ E + P+ VT +V+SAC H G++E G+ ++ G+ + +V +VD+
Sbjct: 1020 FYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVL--DVYIGSALVDMY 1077
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G LE AL L+ + + N W +++ G H
Sbjct: 1078 SKCGSLERAL-LVFFNLPKKNLFCWNSIIEGLAAH 1111
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
LD ++ +++E N+F +N++ +G +L ++ RM+ ++V P+ T+ S++ A
Sbjct: 821 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 880
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
+ A E + + G+ +++ ++D S G + +A ++ + + +
Sbjct: 881 SSFASRFGESLQAHI-WKFGFGFHVKIQ--TTLIDFYSATGRIREARKVFDEMP-ERDDI 936
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254
W ++ + +++ A+ N+ + N L+N Y
Sbjct: 937 AWTTMVSAYRRVLDMDSANSLANQ---MSEKNEATSNCLINGY 976
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 263/328 (80%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMI YSQNK++REA+ F +M GI PD+VTM+TV+SACAHLG L++G
Sbjct: 247 MPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 306
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H+Y +Q GF +DVYIGSALVDMY+KCGSL+R+LLVFF L +KNLFCWNSIIEGLA H
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAH 366
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA EAL MF +M E+V+PN VTF+SV +ACTHAGLV+EGRR + SM YSI VEH
Sbjct: 367 GFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEH 426
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MV L SKAGL+ +ALELI + +F+PNAVIWGALL GC++H+NL IA IA N+LM+LE
Sbjct: 427 YGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLE 486
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL++MYAE +RW +V +IR M+ELGIEK CPG+S I ++++ + FAA+DKS
Sbjct: 487 PMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKS 546
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H ASDE+ L ++ +Q+ LA YV E E
Sbjct: 547 HSASDEVCLLLDEIYDQMGLAGYVQETE 574
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 12/215 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+I YS REA F+EM D + T++SA + +D + Q
Sbjct: 163 TTLIDFYSATGGIREARKVFDEMPER----DDIAWTTMVSAYRRVLDMDSANSL---ANQ 215
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+ + + + L++ Y G+L+++ +F ++ K++ W ++I+G + + EA+A+
Sbjct: 216 MS-EKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAV 274
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLL 188
F +M+ E + P+ VT +V+SAC H G++E G+ ++ G+ + +V +VD+
Sbjct: 275 FYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVL--DVYIGSALVDMY 332
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G LE AL L+ + + N W +++ G H
Sbjct: 333 SKCGSLERAL-LVFFNLPKKNLFCWNSIIEGLAAH 366
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
KC LD ++ +++E N+F +N++ +G +L ++ RM+ ++V P+ T+ S
Sbjct: 74 KC--LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSS 131
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
++ A + A E + + G+ +++ ++D S G + +A ++ +
Sbjct: 132 LVKASSFASRFGESLQAHI-WKFGFGFHVKIQ--TTLIDFYSATGGIREARKVFDEMP-E 187
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254
+ + W ++ + +++ A+ N+ + N L+N Y
Sbjct: 188 RDDIAWTTMVSAYRRVLDMDSANSLANQ---MSEKNEATSNCLINGY 231
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/327 (60%), Positives = 248/327 (75%), Gaps = 8/327 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ +WTTMI+ +++ A F+EM + + ++ + L ++
Sbjct: 171 MSERDVFAWTTMISVHARTGDMSSARQLFDEMP----VRNTASWNAMIDGYSRLRNVE-- 224
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
L Q+ + D+ + ++ Y++ LD+SL+VFFKLR+KNLFCWNSIIEGLAVH
Sbjct: 225 -SAELLFSQMP-NRDIISWTTMIACYSQNKHLDKSLVVFFKLRKKNLFCWNSIIEGLAVH 282
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EALAMF RM E ++PNGVTFISVL ACTHAGLVEEGR+RFLSM+ +SI PE+EH
Sbjct: 283 GYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEH 342
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL KAGLLEDALEL+RS + +PN+VIWGALLGGCKLHRNL+IA +AVNE +LE
Sbjct: 343 YGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLE 402
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNNSGY TLL+NMYAEV+RW+EV IR MKELG+EK PGSSWIEM+RK++QFAASDKS
Sbjct: 403 PNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKS 462
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
H ASDEIY+ L +LD QLKL+ YVPEL
Sbjct: 463 HLASDEIYTLLVELDGQLKLSGYVPEL 489
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+D ++L F ++E N+F +N++I L +AL + M+ V P TF S++ A
Sbjct: 60 IDYAILAFTHMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKA 119
Query: 152 CT-----------------------------------HAGLVEEGRRRFLSMTCGYSITP 176
C+ +AG + E RR F M+
Sbjct: 120 CSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMS-----ER 174
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+V + M+ + ++ G + A +L + N W A++ G RN+E A + +++
Sbjct: 175 DVFAWTTMISVHARTGDMSSARQLFDEMPVR-NTASWNAMIDGYSRLRNVESAELLFSQM 233
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 230/325 (70%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+ MI+ YSQ + REALD F+EM+ + I P+++TM ++LS+CA LGAL+ G
Sbjct: 286 MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETG 345
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ + + V +G+AL+D YAKCGS++ S+ VF K+ KN+ W +I+GLA +
Sbjct: 346 KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASN 405
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F M+ +NVEPN VTFI VLSAC+HAGLV+EGR F+SM+ + I P +EH
Sbjct: 406 GQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEH 465
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AGL+E+A + I++ QPNAVIW LL CK+H+N+EI ++ +L+ILE
Sbjct: 466 YGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILE 525
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA V RW + K+R MKE GI K+ PG S IE++ +++F A D
Sbjct: 526 PTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGI-KKTPGCSLIELDGVIHEFFAEDNV 584
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
H S+EIY+++ + +Q+K A YVP
Sbjct: 585 HSQSEEIYNAIEDMMKQIKSAGYVP 609
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 20/228 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +W +M Y+++ + E + F+EM I D+VT+ +VL+AC L L+LG
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG 244
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I+ YV + G + + ++LVDMYAKCG +D + +F ++ +++ W+++I G +
Sbjct: 245 EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQA 304
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG---------RRRFLSMTCG 171
EAL +F M N++PN +T +S+LS+C G +E G +R L++T G
Sbjct: 305 SRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG 364
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++D +K G +E ++E+ + N + W L+ G
Sbjct: 365 TA----------LMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVLIQG 401
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 16/247 (6%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ++ MI ++ + EA+ F EM + + PD+ T +L C+ L AL G +IH
Sbjct: 88 DSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIH 147
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+M+ GF ++ + L+ MYA CG ++ + VF ++ E+N+ WNS+ G G
Sbjct: 148 ALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWE 207
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYG 182
E + +F M+ ++ + VT +SVL+AC +E G R++ G P +
Sbjct: 208 EVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK-GLKGNPTL--IT 264
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG------CK----LHRNLEIAHIA 232
+VD+ +K G ++ A L + + V W A++ G C+ L ++ A+I
Sbjct: 265 SLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 233 VNELMIL 239
NE+ ++
Sbjct: 324 PNEITMV 330
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLRE 104
+L C + L+ EIH ++++ + + L++ A S+D ++ +F ++ E
Sbjct: 30 ILEQCKTIRDLN---EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDE 86
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR- 163
+ +N +I G + HEA+ +F M +V+P+ TF +L C+ + EG +
Sbjct: 87 PDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQI 146
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L M CG+ V++ ++ + + G +E A + + N W ++ G
Sbjct: 147 HALIMKCGFGSHGFVKN--TLIHMYANCGEVEVARRVFDEMS-ERNVRTWNSMFAG 199
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 227/331 (68%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT+MI Y+Q + +EA+D F EM+++G+ P++VT+ VL ACA +G L LG
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH + + G++ ++ + + L+DMY KCG L+ + +F + E+ + W+++I GLA H
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +ALA+F++MI V+PN VTFI +L AC+H G+VE+GR+ F SMT Y I P +EH
Sbjct: 325 GRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEH 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL S+AGLL++A E I + PN V+WGALLGGCK+H+N+++A A L L+
Sbjct: 385 YGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLD 444
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY +L N+YAE RW +V ++R M++ G+ K+ PG S I +E VY F A D +
Sbjct: 445 PLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGV-KKTPGWSSIMVEGVVYNFVAGDDT 503
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++EI+ + KL +++KL YVP +L
Sbjct: 504 HPQTEEIFQTWEKLLQRMKLKGYVPNTSVVL 534
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 126/284 (44%), Gaps = 37/284 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ A ++ W T + +++ +A+ F ++ ISPD T + VL AC+ L + G
Sbjct: 73 LDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNG 132
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV ++G ++++ + +V +YA CG + + VF K+ ++++ WN +I L
Sbjct: 133 KIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKM 192
Query: 121 GFAHEALAMFDRMIYENVE-------------------------------PNGVTFISVL 149
G A A +F M NV PN VT ++VL
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVL 252
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC G + GRR S GY V ++D+ K G LEDA + + + +
Sbjct: 253 VACADMGNLVLGRRIHDFSNRSGYEKNIRV--CNTLIDMYVKCGCLEDACRIFDNME-ER 309
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
V W A++ G H E A N+++ ++PN + +L
Sbjct: 310 TVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 219/327 (66%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT MI Y +FREAL+ F EM+ S +S D+ TM +V++ACA LGAL++G
Sbjct: 215 MPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMG 274
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +Y+ + G +D ++G+AL+DMY+KCGS++R+L VF + ++ F W +II GLAV+
Sbjct: 275 EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVN 334
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ MF RMI + P+ VTFI VL+ACTHAGLV++GR FLSM Y+I P V H
Sbjct: 335 GYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVH 394
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DLL +AG + +AL+ I PN+ IWG LL C++H N EI + L+ L+
Sbjct: 395 YGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELD 454
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NS LL N+YA+ +RW +V ++R A+ E GI+K PG S IEM+ +++F A D+S
Sbjct: 455 PENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKE-PGCSLIEMDGIIHEFVAGDQS 513
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIYS L + L Y P++
Sbjct: 514 HPMSKEIYSKLESIISDLNNVGYFPDV 540
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 43/252 (17%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD--LGREIH 64
++W +I+ +++ +F E+ +F +M +G +P VT +VLSAC G D LG ++H
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQVH 146
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V+ G D+ + +ALVDMYA+C + + VF ++ +++ W S++ GLA G
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206
Query: 125 EALAMFDRMI-------------------------------YENVEPNGVTFISVLSACT 153
EA +FDRM Y NV + T +SV++AC
Sbjct: 207 EARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACA 266
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS----SKFQ 207
G +E G R ++S I + ++D+ SK G +E AL++ + KF
Sbjct: 267 QLGALEMGEWVRVYMSRQ---GIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT 323
Query: 208 PNAVIWGALLGG 219
A+I G + G
Sbjct: 324 WTAIILGLAVNG 335
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 158/327 (48%), Positives = 219/327 (66%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT MI Y Q QFREAL+ F EM+ S + D+ TM +V++ACA LGAL+ G
Sbjct: 215 MPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETG 274
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+Y+ + G +D ++G+ALVDMY+KCGS+ ++L VF ++ ++ F W ++I GLAV+
Sbjct: 275 EWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVN 334
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ MF RM+ P+ VTFI VL+ACTHAGLV++GR FLSMT Y I P V H
Sbjct: 335 GHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMH 394
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+GC++DLL +AG L++ALE I + +PN+ IWG LL C++H N EI +A L+ L+
Sbjct: 395 FGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELD 454
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YA+ +RW +V ++R + E GI+K PG S IEM +++F A D+S
Sbjct: 455 TENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKE-PGCSLIEMNGTIHEFIAGDRS 513
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIYS L K+ LK A YVP+L
Sbjct: 514 HPMSKEIYSKLDKVLTDLKDAGYVPDL 540
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 39/256 (15%)
Query: 2 PARD---IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
PAR + W +I+ + +++QFR + +F +M +G+ P VT TVLSAC +
Sbjct: 81 PARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIW 140
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKC----------------------------- 89
LG ++H V+ G D+ +G+AL+DMYA+C
Sbjct: 141 LGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFL 200
Query: 90 --GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
G +D++ +F + E++ W ++I+G G EAL MF M + V + T +S
Sbjct: 201 RLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVS 260
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL----ELIRS 203
V++AC G +E G + M+ + I + +VD+ SK G ++ AL E+
Sbjct: 261 VVTACAQLGALETGEWARIYMS-RHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIR 319
Query: 204 SKFQPNAVIWGALLGG 219
KF AVI G + G
Sbjct: 320 DKFTWTAVILGLAVNG 335
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/328 (46%), Positives = 229/328 (69%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW++MI Y++ +Q EAL F+EM+ + + PD+VTM +VLSAC +GAL +G+ I
Sbjct: 231 RDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMI 290
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + +ID+ +G++LVDMYAKCG +D SL VF + +++F W+++I GLA HGF
Sbjct: 291 HECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFG 350
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL F +MI E+++PN VTFI VLSAC+H GLV+EG F SM+ Y ++P++EHYGC
Sbjct: 351 ELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGC 410
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VD+L +AG L++A+ELI+S F P+A++W ALLG C++++N+EIA A L+ LEP+
Sbjct: 411 VVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHV 470
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G LL N+Y++ W +V +R MK + I+K PGSS IE++ V++F A D+SHP
Sbjct: 471 DGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQK-VPGSSSIEVDNAVHEFVAGDQSHPE 529
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S +I LS++ +LK Y P ++L
Sbjct: 530 SKKILRMLSEITARLKANGYAPLTASVL 557
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 143/317 (45%), Gaps = 71/317 (22%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
+P+ D W TMI Y ++ +E++ F +M++ P D +++ V+ AC L
Sbjct: 64 IPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGN 123
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD--RSLL-------------------- 97
G+++H V++IG D+++ +AL++MYAK G ++ R++L
Sbjct: 124 GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVR 183
Query: 98 ---------VFFKLREKNLFCWNSIIEGLAVHG--------------------------- 121
+F ++ E++L WN++I G A G
Sbjct: 184 VGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAY 243
Query: 122 ----FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC--GYSIT 175
++EAL +F M NV P+ VT +SVLSAC G + G+ + C I
Sbjct: 244 AKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGK---MIHECIERNRIE 300
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+++ +VD+ +K G ++++L + + + W A++ G H E+A ++
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR-DVFAWSAMIMGLANHGFGELALDHFSK 359
Query: 236 LMI--LEPNNSGYCTLL 250
++ ++PN+ + +L
Sbjct: 360 MISEDIKPNDVTFIGVL 376
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ +W+ MI + + ALD F++M + I P+ VT VLSAC+H+G +D G
Sbjct: 329 MNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEG 388
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL 96
+ M +D+ I +VD+ + G L ++
Sbjct: 389 W-TYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAM 425
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 232/325 (71%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD SW++M++ Y++ ++ ++AL+ + EM+ + ++PD TM +VLSAC+ +GAL +G
Sbjct: 163 MDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG 222
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H +V G ++DV +G+AL+DMYAKCG ++ S+ VF + K++ W+S+I GLA H
Sbjct: 223 AEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANH 282
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF H+AL++F RM+ E ++PN VTFI VL +CTH GLV +G++ F SM+ + +TP+V+H
Sbjct: 283 GFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQH 342
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL ++G +E+A +LIR F+P+AVIW ALLG C++++N+E+A A+ +L +L+
Sbjct: 343 YGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLD 402
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ G+ LL N+YA+ + W V ++R ++ I+ R PG S IE + +++F + D+S
Sbjct: 403 PHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQ-RIPGRSSIEWQNTIHEFISGDRS 461
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP S EIY L ++ ++L+ A Y P
Sbjct: 462 HPRSKEIYKMLGEMMDRLRQAGYKP 486
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 45/224 (20%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ M+ Y + EA F+ M+ D V+ T++ A G +DL R
Sbjct: 102 PRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRER----DMVSWNTMIHGYAVNGEVDLAR 157
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E VF + +++ F W+S++
Sbjct: 158 E-----------------------------------VFNGMDDRDAFSWSSMMSAYTKGR 182
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVE 179
+ +AL ++ M V P+ T +SVLSAC+ G + G +F+ + +V+
Sbjct: 183 RSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN---GVELDVK 239
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G +E+++ + S + + + W +++ G H
Sbjct: 240 LGTALIDMYAKCGDIENSVRVFHSMPVK-DVLTWSSMIIGLANH 282
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 224/331 (67%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT+MI Y Q + +EA+ F +M+ +G+ ++VT+ VL+ACA LGALDLG
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y + GF +V I + L+DMY KCG L+ + VF ++ E+ + W+++I GLA+H
Sbjct: 280 MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F M +EPNGVTFI +L AC+H GL+ EGRR F SMT Y I P++EH
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGLL +A E I + +PN V+WGALLG C++H+N+E+A A+ L+ L+
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY +L N+YAE RW + ++R MK+ + K+ PG S I ++ V++F A ++S
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQV-KKTPGWSSITVDGVVHEFVAGEES 518
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +++I+ +L E+++L YVP +L
Sbjct: 519 HPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 35/275 (12%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W + + ++ +A+ F ++ + PD T ++VL AC +L L GR +H V
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN----------------- 111
++GF ++Y+ + +V +YA CG + + L+F K+ ++++ WN
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215
Query: 112 --------------SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
S+I G G A EA+ +F +M V+ N VT ++VL+AC G
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ G R + + V ++D+ K G LE+A ++ + + V W A++
Sbjct: 276 LDLG-MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMI 333
Query: 218 GGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
GG +H E A +++ + +EPN + LL
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 224/331 (67%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT+MI Y Q + +EA+ F +M+ +G+ ++VT+ VL+ACA LGALDLG
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y + GF +V I + L+DMY KCG L+ + VF ++ E+ + W+++I GLA+H
Sbjct: 280 MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F M +EPNGVTFI +L AC+H GL+ EGRR F SMT Y I P++EH
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGLL +A E I + +PN V+WGALLG C++H+N+E+A A+ L+ L+
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY +L N+YAE RW + ++R MK+ + K+ PG S I ++ V++F A ++S
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQV-KKTPGWSSITVDGVVHEFVAGEES 518
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +++I+ +L E+++L YVP +L
Sbjct: 519 HPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 35/275 (12%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W + + ++ +A+ F ++ + PD T ++VL AC +L L GR +H V
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN----------------- 111
++GF ++Y+ + +V +YA CG + + L+F K+ ++++ WN
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215
Query: 112 --------------SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
S+I G G A EA+ +F +M V+ N VT ++VL+AC G
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ G R + + V ++D+ K G LE+A ++ + + V W A++
Sbjct: 276 LDLG-MRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMI 333
Query: 218 GGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
GG +H E A +++ + +EPN + LL
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 216/326 (66%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT MI Y Q +FREAL+ F EM+ S +S D+ TM +V++ACA LGAL++G
Sbjct: 237 MPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMG 296
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +Y+ + G +D ++G+AL+DMY+KCGS++R+L VF + ++ F W +II GLAV+
Sbjct: 297 EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVN 356
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ MF RMI + P+ VTFI VL+ACTHAGLV++GR FLSM Y+I P V H
Sbjct: 357 GYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVH 416
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DL +AG + +AL+ I PN+ IWG LL C++H N EI + L+ ++
Sbjct: 417 YGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMD 476
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NS TLL N+YA+ +RW +V ++R + E GI+K PG S IEM +++F A D+S
Sbjct: 477 PENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKE-PGCSLIEMNGIIHEFVAGDQS 535
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY L + L Y P+
Sbjct: 536 HPMSKEIYCKLESIINDLNNVGYFPD 561
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 41/251 (16%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH-LGALDLGREIHL 65
+ W +I+ +++ ++F EA +F +M +G +P VT +VLSAC G + LG ++H
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHG 169
Query: 66 YVMQIGFDIDVYIGSALVDMYAKC-------------------------------GSLDR 94
V+ G D+ + +ALVDMYA+C G +D
Sbjct: 170 RVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDE 229
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F ++ E++ W ++I+G EAL MF M NV + T +SV++AC
Sbjct: 230 ARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQ 289
Query: 155 AGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS----SKFQP 208
G +E G R ++S I + ++D+ SK G +E AL++ + KF
Sbjct: 290 LGALEMGEWVRVYMSRQ---GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTW 346
Query: 209 NAVIWGALLGG 219
A+I G + G
Sbjct: 347 TAIILGLAVNG 357
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 219/326 (67%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD +SWT MI Y + +F EAL F EM+ S + PD+ TM ++L+ACAHLGAL+LG
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG 359
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y+ + D ++G+AL+DMY KCG++ ++ VF ++ K+ F W ++I GLA++
Sbjct: 360 EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAIN 419
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EALAMF MI ++ P+ +T+I VL ACTHAG+VE+G+ F+SMT + I P V H
Sbjct: 420 GHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTH 479
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG LE+A E+I + +PN+++WG+LLG C++H+N+++A +A +++ LE
Sbjct: 480 YGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELE 539
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N LL N+YA RW + ++R M E GI K+ PG S +E+ VY+F A D+S
Sbjct: 540 PENGAVYVLLCNIYAACKRWENLRQVRKLMMERGI-KKTPGCSLMELNGNVYEFVAGDQS 598
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY+ L + + L A Y P+
Sbjct: 599 HPQSKEIYAKLENMMQDLIKAGYSPD 624
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 40/254 (15%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A ++++W M++ Y++ KQF+++ F EM+ G+SP+ VT+ +LSAC+ L L+ G+
Sbjct: 170 AWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKH 229
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA---- 118
I+ Y+ + ++ + + L+DM+A CG +D + VF ++ +++ W SI+ G A
Sbjct: 230 IYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQ 289
Query: 119 ----------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSA 151
+ G+ EALA+F M NV+P+ T +S+L+A
Sbjct: 290 IDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTA 349
Query: 152 CTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR----SSK 205
C H G +E G + ++ SI + ++D+ K G + A ++ + K
Sbjct: 350 CAHLGALELGEWVKTYIDKN---SIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDK 406
Query: 206 FQPNAVIWGALLGG 219
F A+I G + G
Sbjct: 407 FTWTAMIVGLAING 420
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W TMI YS+ + + + M S I PD+ T +L AL G
Sbjct: 67 IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + ++ GFD ++++ A + M++ C +D + VF + WN ++ G
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
++ +F M V PN VT + +LSAC+ +E G+ + + G + +
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGI-VERNLIL 245
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ + G +++A + + K + + W +++ G
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTG 283
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
++L C + L ++IH + +++G D ++ + G + + VF +
Sbjct: 12 SLLEKCKSMYQL---KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ LF WN++I+G + ++M+ M+ N++P+ TF +L T ++ G+
Sbjct: 69 QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGK 127
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 226/331 (68%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++ SWT+MI+ + Q + EA+D F ++++ + P++VT+ +VL+ACA LG LDLG
Sbjct: 102 MPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG 161
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y + GF +V++ + L+DMY KCG L+ + VF+++ E+ + W+++I GLA+H
Sbjct: 162 RIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMH 221
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F MI V+PNGVTFI +L AC+H GL++EGRR F SMT Y + P++EH
Sbjct: 222 GQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEH 281
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL S+AGLLE+A E I S +PN V+WGALLGGCK+H+N+++A A+ L L+
Sbjct: 282 YGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY ++ N+YAE RW + ++R MK+ G+ K+ G S I + V++F A D++
Sbjct: 342 PLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGV-KKTSGWSSITVNGVVHEFVAGDQT 400
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +++I KL ++K Y P+ +L
Sbjct: 401 HPQAEDICKIWDKLLVKMKRRGYAPKTSVVL 431
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 37/253 (14%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M+ + PD T + VL AC L + G+ IH ++GF ++++ + ++++Y CG
Sbjct: 1 MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60
Query: 92 LDRSLLVFFKLRE-------------------------------KNLFCWNSIIEGLAVH 120
+ ++L+F K+ + KN+ W S+I G
Sbjct: 61 MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
G +EA+ +F ++ E V PN VT +SVL+AC G ++ GR S G+ V
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHV- 179
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
++D+ K G LE+A + + + V W A++ G +H E A +E++ L
Sbjct: 180 -CNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKL 237
Query: 240 --EPNNSGYCTLL 250
+PN + LL
Sbjct: 238 GVKPNGVTFIGLL 250
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 153/326 (46%), Positives = 222/326 (68%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD I+WT MI Y Q +FR+AL+ F M+ + D+ TM +V++ACA LGAL+ G
Sbjct: 253 MPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG 312
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+Y+ ++G +DV++G+AL+DMY+KCGS++R+L VF + ++ F W +II GLAV+
Sbjct: 313 EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVN 372
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ MF RM+ P+ VTF+ VL+ACTHAGLV++GR FLSMT Y+I+P V H
Sbjct: 373 GRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVH 432
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++D+L +AG L++AL+ I +PN+ IWG LL C+++ N EI +A L+ L+
Sbjct: 433 YGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELD 492
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NS LL NMYA+ +RW +V +IR + E GI+K PG S IEM +++F A+D+S
Sbjct: 493 PDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKE-PGCSMIEMNGIIHEFVAADRS 551
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP + EIYS L + L+ A YVP+
Sbjct: 552 HPMNKEIYSKLENVLTDLRNAGYVPD 577
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 36/248 (14%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ W +I+ ++++ +F + +F +M + VT +VLSAC L LG ++H
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ G D + +ALVDMYA+CG +D + ++F ++ +++ W S+I GL G A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 127 LAMFDRMIYEN-------------------------------VEPNGVTFISVLSACTHA 155
+FD M + V + T +SV++AC
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS----SKFQPNAV 211
G +E G + M I +V ++D+ SK G +E AL++ + KF A+
Sbjct: 307 GALETGEWARIYMG-RLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAI 365
Query: 212 IWGALLGG 219
I G + G
Sbjct: 366 ILGLAVNG 373
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 222/331 (67%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++I+SW++MI Y+ N +EALD F +M N G+ PD M VL +CA LGAL+LG
Sbjct: 270 MLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG 329
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ F + +G+AL+DMYAKCG +DR+ VF +R+K+ WN+ I GLA+
Sbjct: 330 DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMS 389
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F +M ++P+ TF+ +L ACTHAGLVEEGRR F SM C +++TPE+EH
Sbjct: 390 GHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEH 449
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A +LI+S + NA++WGALLGGC+LHR+ ++ + + +L+ LE
Sbjct: 450 YGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALE 509
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA +W E KIR M E G+ K+ PG SWIE++ V+QF D S
Sbjct: 510 PWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGV-KKIPGYSWIEVDGVVHQFLVGDTS 568
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY+ L +L + LK A YVP + +L
Sbjct: 569 HPLSEKIYAKLGELAKDLKAAGYVPTTDHVL 599
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ SWT I+ Y + REA+D F + G+ PD ++ VLSAC G L G
Sbjct: 169 IPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + G +V++ +ALVD Y KCG+++R+ VF + EKN+ W+S+I+G A +
Sbjct: 229 EWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASN 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M+ E ++P+ + VL +C G +E G ++ G
Sbjct: 289 GLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWA-SNLINGNEFLDNSVL 347
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G ++ A E+ R + + + V+W A + G
Sbjct: 348 GTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISG 385
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 6/217 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + TMI N F+E+++ ++ M+ G+SPD T VL ACA + +LG ++H
Sbjct: 72 NIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMH 131
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V++ G + D ++ +L+++Y KCG +D + VF + +KN W + I G G
Sbjct: 132 SLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCR 191
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYG 182
EA+ MF R++ + P+ + + VLSAC G + G +++ + V
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITEN---GMVRNVFVAT 248
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD K G +E A + + N V W +++ G
Sbjct: 249 ALVDFYGKCGNMERARSVF-DGMLEKNIVSWSSMIQG 284
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++G D D Y+ + ++ G+ + S + + +E N+F +N++I GL ++
Sbjct: 27 KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E++ ++ M E + P+ TF VL AC R L G + V
Sbjct: 87 DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACA----------RVLDSELGVKMHSLVVK 136
Query: 181 YGC---------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GC +++L +K G +++A ++ N W A + G
Sbjct: 137 AGCEADAFVKISLINLYTKCGFIDNAFKVFDDIP-DKNFASWTATISG 183
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 222/325 (68%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT MI Y + ++EAL F EM+ S I PD+ TM +VL+ACA LGAL+LG
Sbjct: 223 MPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG 282
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + D ++G+AL+DMY KCG+++ +L +F L +++ F W +++ GLA++
Sbjct: 283 EWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAIN 342
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL MF +M+ +V P+ VT++ VLSACTH G+V+EG++ F SMT + I P + H
Sbjct: 343 GCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAH 402
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL KAG L++A E+I++ +PN+++WGALLG C++H++ E+A A+ +++ LE
Sbjct: 403 YGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELE 462
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN L N+YA ++W ++ ++R M + GI K+ PG S IEM V++F A D+S
Sbjct: 463 PNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGI-KKTPGCSLIEMNGIVHEFVAGDQS 521
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + EIY L+K+ LK+A Y P
Sbjct: 522 HPQTKEIYGKLNKMTSDLKIAGYSP 546
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 30/234 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + SW M YS+ + + + EM + PD T + AL LG
Sbjct: 74 IPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLG 133
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H +V++ G D +V+ +AL++MY+ CG +D + +F + ++ WN++I G
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISG---- 189
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
Y ++ + +++ ++++ + G V+ R+ F M PE +H
Sbjct: 190 --------------YNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKM-------PERDH 228
Query: 181 --YGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ M+D + ++AL L R +SK +P+ ++L C LE+
Sbjct: 229 VSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG 282
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/161 (18%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH ++ G + I + ++ + G + + +F + E ++F WN + +G +
Sbjct: 31 KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++++ M+ NV+P+ T+ + T + ++ GR + Y + V
Sbjct: 91 RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVV-KYGLDSNV 149
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++++ S GL++ A + S + + V W A++ G
Sbjct: 150 FAHNALINMYSLCGLIDMARGIFDMS-CKSDVVTWNAMISG 189
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/322 (45%), Positives = 227/322 (70%), Gaps = 1/322 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD SW++MI+ Y+++++ +EAL+ + EM + I PD +T+ +V+SAC+ LGAL +G E+
Sbjct: 83 RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEV 142
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +V ++D+ +G+AL+DMYAKCG ++ + VF ++ EK++ W+S+I GLA HG
Sbjct: 143 HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLG 202
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
HE+L++F +MI E ++PNGVTF+ VL ACTH GLV EG++ F SM + I P VEHYGC
Sbjct: 203 HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC 262
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++G +E+A +LIRS F+P+ +IW ALLG C++H+N+EIA A+ +L +L+P
Sbjct: 263 MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLG 322
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G+ LL N+YA+ + W V ++R ++ I+ R PG S IE + K+++F + D+ HP
Sbjct: 323 DGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQ-RIPGRSSIEWDEKIHEFVSGDRLHPR 381
Query: 304 SDEIYSSLSKLDEQLKLASYVP 325
S EIY L ++ ++LK A Y P
Sbjct: 382 SKEIYRVLEEMMDRLKQAGYKP 403
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ +W++MI + + E+L F++M + G+ P+ VT VL AC H+G + G
Sbjct: 181 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 240
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
++ + ++ G + V +VD+ + G ++ + + + E + W +++
Sbjct: 241 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 300
Query: 119 VHG---FAHEALA 128
+H A EA+A
Sbjct: 301 IHKNVEIAEEAMA 313
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 51/256 (19%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ M+ Y + EA F+ M D V+ T++ A G + L R
Sbjct: 19 PLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMR----DLVSWNTMIHGYAMRGEVGLAR 74
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
EI FD G+ DR + F W+S+I A
Sbjct: 75 EI--------FD----------------GTEDR-----------DAFSWSSMISAYAKSR 99
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVE 179
+ EAL ++ M ++ P+ +T +SV+SAC+ G + G RF+ I +++
Sbjct: 100 RSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESN---RIELDLK 156
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL----HRNLEIAHIAVNE 235
++D+ +K G +E A + + + + W +++ G H +L + ++E
Sbjct: 157 LGTALIDMYAKCGDIESA-QRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISE 215
Query: 236 LMILEPNNSGYCTLLL 251
M +PN + +L+
Sbjct: 216 GM--KPNGVTFVGVLI 229
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 222/331 (67%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W+ MI+ Y+++ + +EAL+ F+EM+ GI PDQVT+ +V+SACA LG LD
Sbjct: 40 MEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRA 99
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH+YV + G + + +AL+DMYAKCG+L + VF K++ +N+ W S+I A+H
Sbjct: 100 KWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIH 159
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A AL F +M EN++PNGVTF+ VL AC+HAGLVEEGRR F SMT ++ITP+ EH
Sbjct: 160 GDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEH 219
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +A LL DALEL+ + PN VIWG+L+ C++H E+ A +++ LE
Sbjct: 220 YGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELE 279
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L N+YA+ RW +V ++R MK+ GI K G S IE+ +VY+F +DK
Sbjct: 280 PDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKE-RGCSRIELNNQVYEFVMADKK 338
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +D+IY L ++ ++LKL Y P ++L
Sbjct: 339 HKQADKIYEKLDEVVKELKLVGYTPNTRSVL 369
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A++ Y++ G ++ + L+F ++ EK+L CW+++I G A EAL +F M ++
Sbjct: 18 TAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIK 77
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLLEDAL 198
P+ VT +SV+SAC G+++ R +++ M + + + ++D+ +K G L A
Sbjct: 78 PDQVTILSVISACARLGVLD--RAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAAR 135
Query: 199 ELIRSSKFQPNAVIWGALLGGCKLH 223
+ + + N + W +++ +H
Sbjct: 136 GVFEKMQSR-NVISWTSMINAFAIH 159
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/325 (45%), Positives = 218/325 (67%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD+++W+ MI+ Y+Q+ + REAL FNEM+ + ++P+ VTM +VLSACA LGAL+ G
Sbjct: 333 MHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETG 392
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + + V +G+ALVD YAKCG + ++ F + +N + W ++I+G+A +
Sbjct: 393 KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASN 452
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +F M+ N+EP VTFI VL AC+H LVEEGRR F SMT Y I P +EH
Sbjct: 453 GRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEH 512
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+++A + IR+ +PNAV+W ALL C +H+N+EI A+ +++ L+
Sbjct: 513 YGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLD 572
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N YA V +W +R MKE G+EK PG S IE+E +++F A D
Sbjct: 573 PCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEK-IPGCSLIELEGTIFEFFAEDSE 631
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EIY + ++ E +K+ Y+P
Sbjct: 632 HPQLTEIYEKVHEMIENIKMVGYIP 656
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 16/223 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +I+W MI Y +N ++E ++ F M D+VT+ +V +AC LG +LG+ I
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI 294
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y + G + +ALVDMYAKCG LD++ +F ++ +++ W+++I G
Sbjct: 295 AEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRC 354
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMTCGYSITP 176
EALA+F+ M V PN VT +SVLSAC G +E G RR+ L +T
Sbjct: 355 REALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTA- 413
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD +K G ++DA++ S + N W AL+ G
Sbjct: 414 -------LVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALIKG 448
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 23/261 (8%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLG 60
P R S+ +I + + +AL F EM ++ +SPDQ T+A + +C+ + L +G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + Y + GF +D ++ ++L+ MYA CG + + ++F ++ K + WN++I G +
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E + MF M+ + VT +SV +AC G G I E
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLG----------DANLGQWIAEYAEE 300
Query: 181 YG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
G +VD+ +K G L+ A L + V W A++ G A
Sbjct: 301 KGMLRSRNLATALVDMYAKCGELDKARRLF-DRMHSRDVVAWSAMISGYTQSDRCREALA 359
Query: 232 AVNELMILE--PNNSGYCTLL 250
NE+ E PN+ ++L
Sbjct: 360 IFNEMQGTEVNPNDVTMVSVL 380
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/322 (45%), Positives = 226/322 (70%), Gaps = 1/322 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD SW++MI+ Y++ + +EAL+ + EM+ +G++PD ++M +VLSAC+ +GAL +G E+
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +V ++D+ +G+ALVDMYAKCG ++ SL VF + K++ W+S+I GLA HG
Sbjct: 236 HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLG 295
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
H+AL++F MI + ++PN +TFI VL ACTH GLV +G++ F SM+ + + P +EHYGC
Sbjct: 296 HDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGC 355
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG +E+A+ELIRS F+P+ +IW LLG C++H+N+EIA A+ +L +L+P
Sbjct: 356 MVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLA 415
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G+ LL N+YA+ + W V ++R ++ I+ R PG S IE E V++F + D+SHP
Sbjct: 416 DGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQ-RVPGRSSIEWENTVHEFVSGDRSHPR 474
Query: 304 SDEIYSSLSKLDEQLKLASYVP 325
+EIY L ++ ++L+ A Y P
Sbjct: 475 IEEIYKMLEEMMDRLRQAGYRP 496
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W++MI + + +AL F+EM + G+ P+++T VL AC H+G ++ G
Sbjct: 274 MPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDG 333
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
++ + + G + +VD+ + G ++ ++ + + K + W +++
Sbjct: 334 KKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACR 393
Query: 119 VHG---FAHEALA 128
+H A EA+A
Sbjct: 394 IHKNVEIAEEAMA 406
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ M+ Y + EA F+ M D V+ T++ A G + + R
Sbjct: 112 PRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGR----DLVSWNTMIHGYAVRGDVGMAR 167
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
EI F R+++ F W+S+I A
Sbjct: 168 EI-----------------------------------FDGTRDRDAFSWSSMISAYAKGR 192
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVE 179
+ EAL ++ M V P+ ++ +SVLSAC+ G + G RF+ + +++
Sbjct: 193 CSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESN---RVEVDMK 249
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--M 237
+VD+ +K G +E++L++ + + + + W +++ G H + H A++ M
Sbjct: 250 LGTALVDMYAKCGDIENSLKVFHAMPVK-DVLTWSSMIIGLANH---GLGHDALSLFSEM 305
Query: 238 I---LEPNNSGYCTLLL 251
I L+PN + +L+
Sbjct: 306 ISQGLQPNEITFIGVLI 322
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 220/326 (67%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT MI Y Q +F+E L F EM+ + I PD+ TM ++L+ACAHLGAL+LG
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG 371
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + ID ++G+AL+DMY CG++++++ +F + ++ W ++I GLA++
Sbjct: 372 EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAIN 431
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EAL MF +M+ ++ P+ VT I VL ACTH+G+V++G++ F MT + I P V H
Sbjct: 432 GYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAH 491
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A E+I++ +PN+++WG+LLG C++HR+ E+A +A +++ LE
Sbjct: 492 YGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELE 551
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N LL N+YA +RW ++ ++R M + GI K+ PG S IEM V++F A D+
Sbjct: 552 PENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGI-KKTPGCSLIEMNGSVHEFVAGDQV 610
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIYS L ++ LK A Y P+
Sbjct: 611 HPQSKEIYSKLDEMSVDLKFAGYSPD 636
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 125/252 (49%), Gaps = 40/252 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++W MI+ Y+++KQF E++ F+EM+ + P +T+ +VLSAC+ L L++G+ +H
Sbjct: 184 DVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH 243
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA------ 118
YV + + + +AL+DMYA CG +D +L +F ++ +++ W +I+ G
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVG 303
Query: 119 --------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSACT 153
+ G+ E L++F M N++P+ T +S+L+AC
Sbjct: 304 LARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 363
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS----SKFQ 207
H G +E G + ++ I + ++D+ G +E A+ + + K
Sbjct: 364 HLGALELGEWIKAYIDKN---EIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKIS 420
Query: 208 PNAVIWGALLGG 219
AVI+G + G
Sbjct: 421 WTAVIFGLAING 432
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 9/278 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + W MI YS+ A+ + EM G+ PD+ T +L A+ G
Sbjct: 79 MPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H +++++GF +V++ +AL+ +Y+ G + + VF + + ++ WN +I G
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
E++ +FD M V P+ +T +SVLSAC+ + G+R R++ I P
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK---DLKIEPVR 255
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++D+ + G ++ AL + + K + + + W A++ G NL +A N
Sbjct: 256 VLENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTG---FTNLGQVGLARNYFDK 311
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ + T +++ Y +V+R+ EV + M+ I+
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIK 349
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK--CGSLDRSLLV 98
Q +++ C + L ++IH + G + + + ++ K G ++ + +V
Sbjct: 19 QTPPLSLIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMV 75
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F + N F WN++I+G + G + A++M+ M+ V P+ T+ +L T V
Sbjct: 76 FDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAV 135
Query: 159 EEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGAL 216
+ GR + G+S V++ ++ L S +G + A + RSSK + V W +
Sbjct: 136 KCGRELHDHIVKLGFSSNVFVQN--ALIHLYSLSGEVSVARGVFDRSSK--GDVVTWNVM 191
Query: 217 LGG 219
+ G
Sbjct: 192 ISG 194
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 222/330 (67%), Gaps = 4/330 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P++D+++WT M+T Y+QN + +EAL+ F +M++ G+ D+VT+A V+SACA LGA+
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
I + GF +V +GSAL+DMY+KCGS D + VF ++E+N+F ++S+I G A
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG AH AL +F M+ + PN VTFI +LSAC+HAGLVE+GR+ F M + + P
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSP 414
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVDLL +AG LE+AL+L+++ +PN +WGALLG C++H N +IA IA NEL
Sbjct: 415 DHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK 474
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER-KVYQFAAS 297
LEPN G LL N+YA RW EV+K+R ++E G +K PG SW E + +++ F A
Sbjct: 475 LEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKN-PGCSWFEGKNGEIHDFFAG 533
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
D +HP S EI +L +L E+L+ Y P L
Sbjct: 534 DTTHPRSSEIRQALKQLIERLRSHGYKPNL 563
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
WT MI Y+ E+ + + M+ G+ P T + + AC +DLG+++H +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169
Query: 69 QIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----------------------- 104
IG F D+Y+G++++D+Y KCG L + VF ++ E
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229
Query: 105 --------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
K++ W +++ G A +G EAL F +M +E + VT V+SAC G
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289
Query: 157 LVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK----FQPNAV 211
V+ R ++ G+ + V ++D+ SK G ++A ++ K F +++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349
Query: 212 IWGALLGGCKLHRNLEIAH 230
I G + G + H L++ H
Sbjct: 350 ILGYAMHG-RAHSALQLFH 367
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 12/221 (5%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC----GSLDRSLLVFFKLREKNLFCWNSIIEG 116
+++H ++++ G Y+ + L+ M K GS LLVF ++ N F W ++I G
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSY--PLLVFGQVNYPNPFLWTAMIRG 116
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A+ G E+ + RM + V P TF ++ AC A ++ G++
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++ M+DL K G L A ++ + + V W L+ + ++E A ++L
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAKYGDMESASGLFDDL 235
Query: 237 MILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
P+ T ++ YA+ R E + M+++G+E
Sbjct: 236 ----PSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGME 272
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/331 (45%), Positives = 221/331 (66%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W+ MI+ Y+++ +EAL+ FNEM++ GI PDQVTM +V++ACAHLGALD
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA 374
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IHL+V + GF + I +AL++MYAKCGSL+R+ +F K+ KN+ W +I A+H
Sbjct: 375 KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMH 434
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A AL F +M EN+EPNG+TF+ VL AC+HAGLVEEGR+ F SM ++ITP+ H
Sbjct: 435 GDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVH 494
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +A LL +ALEL+ + PN +IWG+L+ C++H +E+ A L+ L+
Sbjct: 495 YGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELD 554
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L N+YA+ RW +V ++R MK GI K G S E+ ++++F +D+S
Sbjct: 555 PDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKE-RGCSRFELNNEIHEFLVADRS 613
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +DEIY L ++ +LKL Y P ++L
Sbjct: 614 HKHADEIYEKLYEVVSKLKLVGYSPNTCSIL 644
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 41/286 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+ MI Y Q+ F +AL F EMKN + PD++ ++TVLSAC G L G
Sbjct: 183 MFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG 242
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN-------------- 106
+ IH ++M+ +D ++ SALV MYA CGS+D +L +F K+ KN
Sbjct: 243 KMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKL 302
Query: 107 -----------------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
L CW+++I G A EAL +F+ M ++P+ VT +SV+
Sbjct: 303 GQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVI 362
Query: 150 SACTHAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
+AC H G +++ + L + G+ + + ++++ +K G LE A + +
Sbjct: 363 TACAHLGALDQAKWIHLFVDKNGFGGALPINN--ALIEMYAKCGSLERARRIFDKMP-RK 419
Query: 209 NAVIWGALLGGCKLHRN----LEIAHIAVNELMILEPNNSGYCTLL 250
N + W ++ +H + L H +E +EPN + +L
Sbjct: 420 NVISWTCMISAFAMHGDAGSALRFFHQMEDE--NIEPNGITFVGVL 463
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
S++++ + L + M+ G++ D+ + +L A + + +L G EIH ++GFD D
Sbjct: 98 SRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDP 157
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + LV MYA CG + + L+F K+ +++ W+ +I+G G ++AL +F+ M
Sbjct: 158 FVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNY 217
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
NVEP+ + +VLSAC AG + G+ F+ M + P ++ +V + + G +
Sbjct: 218 NVEPDEMMLSTVLSACGRAGNLSYGKMIHDFI-MENNIVVDPHLQ--SALVTMYASCGSM 274
Query: 195 EDALELIRSSKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLN 252
+ AL L K P N V A++ G +E A N+++ C + +++
Sbjct: 275 DLALNLFE--KMTPKNLVASTAMVTGYSKLGQIENARSVFNQMV----KKDLVCWSAMIS 328
Query: 253 MYAEVSRWAEVTKIRVAMKELGIE 276
YAE E + M+ LGI+
Sbjct: 329 GYAESDSPQEALNLFNEMQSLGIK 352
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 218/328 (66%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++ SW +I Y +N F E L++F M G + P+ T+ VLSAC+ LGALD+
Sbjct: 264 MPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDM 323
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y IG+ ++++G+ L+DMYAKCG ++ +++VF L K++ WN+II GLA+
Sbjct: 324 GKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAI 383
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A +AL MFDRM E EP+GVTF+ +LSACTH GLV++G F SM YSI P++E
Sbjct: 384 HGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIE 443
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL+ AL IR +P+AVIW ALLG C+L++N+EIA +A+ L+ L
Sbjct: 444 HYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIEL 503
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPNN ++ N+Y ++ R +V ++++AM++ G K PG S IE V +F + D+
Sbjct: 504 EPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRK-LPGCSVIECNDSVVEFYSLDE 562
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
H ++ IY L L L+ YVP L
Sbjct: 563 RHSETESIYRVLKGLTMLLRSHGYVPNL 590
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 44/224 (19%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++ W+ +I+ Y ++K A + F++M P++ TM+
Sbjct: 203 PERDVVMWSVLISGYIESKNMAAARELFDKM------PNRDTMSW--------------- 241
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+A+++ YA G ++ VF ++ E+N+F WN +I G +G
Sbjct: 242 ------------------NAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNG 283
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
E L F RM+ E +V PN T ++VLSAC+ G ++ G+ + + GY V
Sbjct: 284 LFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVG 343
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G++E+A+ ++ + + + + W ++ G +H
Sbjct: 344 N--VLIDMYAKCGVIENAV-VVFNCLDRKDIISWNTIINGLAIH 384
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + +W M Y QN R+ + F E+ P+ T ++ +C L + G
Sbjct: 70 IPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREG 129
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H + GF + ++ ++L+DMY+K G ++ + VF ++ E+N+ W +II G +
Sbjct: 130 EEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILC 189
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF-----------LSMT 169
G +FD +V V + ++S + + R F +M
Sbjct: 190 GDVVSGRRLFDLAPERDV----VMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAML 245
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GY++ EVE + + D + + N W L+GG
Sbjct: 246 NGYAVNGEVEMFEKVFDEMP-----------------ERNVFSWNGLIGG 278
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
T+L +C + L +I ++ G + + ++ + ++ + + +F K+ +
Sbjct: 17 TLLRSCKNYERL---HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQP 73
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
N WN++ G +G + + +F + PN TF ++ +C V EG
Sbjct: 74 NTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVH 133
Query: 166 LSMTC-GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
T G+ V ++D+ SK G +EDA ++ + N V+W A++ G
Sbjct: 134 CCATKHGFKSNSFVA--TSLIDMYSKKGCVEDAYKVF-GEMHERNVVVWTAIING 185
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 221/330 (66%), Gaps = 4/330 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M+T Y+QN + +EAL+ F +M++ G+ D+VT+A V+SACA LGA+
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
I + GF +V +GSAL+DMY+KCGS D + VF ++E+N+F ++S+I G A
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG AH AL +F M+ + PN VTFI +LSAC+HAGLVE+GR+ F M + + P
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSP 414
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVDLL +AG LE+AL+L+++ +PN +WGALLG C++H N +IA IA NEL
Sbjct: 415 DHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK 474
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER-KVYQFAAS 297
LEPN G LL N+YA RW EV+K+R ++E G +K PG SW E + +++ F A
Sbjct: 475 LEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKN-PGCSWFEGKNGEIHDFFAG 533
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
D +HP S EI +L +L E+L+ Y P L
Sbjct: 534 DTTHPRSSEIRQALKQLIERLRSHGYKPNL 563
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
WT MI Y+ E+ + + M+ G+ P T + + AC +DLG+++H +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169
Query: 69 QIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----------------------- 104
IG F D+Y+G++++D+Y KCG L + VF ++ E
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229
Query: 105 --------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
K++ W +++ G A +G EAL F +M +E + VT V+SAC G
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289
Query: 157 LVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK----FQPNAV 211
V+ R ++ G+ + V ++D+ SK G ++A ++ K F +++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349
Query: 212 IWGALLGGCKLHRNLEIAH 230
I G + G + H L++ H
Sbjct: 350 ILGYAMHG-RAHSALQLFH 367
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 10/220 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC----GSLDRSLLVFFKLREKNLFCWNSIIEG 116
+++H ++++ G Y+ + L+ M K GS LLVF ++ N F W ++I G
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSY--PLLVFGQVNYPNPFLWTAMIRG 116
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A+ G E+ + RM + V P TF ++ AC A ++ G++
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++ M+DL K G L A ++ + + V W L+ + ++E A ++L
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELIVAYAKYGDMESASGLFDDL 235
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ + T ++ YA+ R E + M+++G+E
Sbjct: 236 PL---KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGME 272
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 228/331 (68%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI+SW MI Y+ N +EA+D F +M+ + PD T+ VLSACA LGAL+LG
Sbjct: 274 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG 333
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ V + F + +G+AL+D+YAKCGS+ R+ VF ++EK+ WN+II GLA++
Sbjct: 334 EWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMN 393
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ + +F ++ ++P+G TFI +L CTHAGLV+EGRR F SM +S+TP +EH
Sbjct: 394 GYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEH 453
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL++A +LIR+ + NA++WGALLG C++HR+ ++A +A+ +L+ LE
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELE 513
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+Y+ +W E K+R++M E I+K PG SWIE++ V++F DK
Sbjct: 514 PWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP-PGCSWIEVDGIVHEFLVGDKY 572
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY+ L +L +++K+A YVP + +L
Sbjct: 573 HPLSEKIYAKLDELTKKMKVAGYVPTTDFVL 603
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 150/260 (57%), Gaps = 20/260 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++SWT +I+ Y +FREA+D F + ++PD T+ VLSAC LG L+ G
Sbjct: 173 IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG 232
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH +M++G +V++G++LVDMYAKCG+++++ VF + EK++ W ++I+G A++
Sbjct: 233 EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALN 292
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
G EA+ +F +M ENV+P+ T + VLSAC G +E G R FL
Sbjct: 293 GLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFL------ 346
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH-- 230
P + ++DL +K G + A E+ + K + + V+W A++ G ++ ++I+
Sbjct: 347 -YNPVLGT--ALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFGL 402
Query: 231 IAVNELMILEPNNSGYCTLL 250
E + ++P+ + + LL
Sbjct: 403 FGQVEKLGIKPDGNTFIGLL 422
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 8/222 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I W TMI N F +A++ + M++ G P+ T VL ACA L L LG +IH
Sbjct: 76 NIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V++ GFD DV++ ++LV +YAKCG L+ + VF + +KN+ W +II G G
Sbjct: 136 TLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFR 195
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG---RRRFLSMTCGYSITPEVEHY 181
EA+ MF R++ N+ P+ T + VLSACT G + G + + M + V
Sbjct: 196 EAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEM----GMVRNVFVG 251
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G +E A + + + V WGA++ G L+
Sbjct: 252 TSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALN 292
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 82 LVDMYAKCG----SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
L++M +C + + +F ++++ N+F WN++I GL + +A+ + M E
Sbjct: 48 LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLL 188
PN TF VL AC R L + G I V G +V L
Sbjct: 108 FLPNNFTFPFVLKACA----------RLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLY 157
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+K G LEDA ++ N V W A++ G
Sbjct: 158 AKCGYLEDAHKVFDDIP-DKNVVSWTAIISG 187
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 224/327 (68%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SWT MI Y ++ +F+EAL+ F M+ + + PD+ TM +VL+ACAHLGAL+LG
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + D+++ +AL+DMY KCG +D++ +F ++ +++ F W ++I GLAV+
Sbjct: 371 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN 430
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL MF M+ ++ P+ +T+I VLSACTH GLV++GR+ FL MT + I P + H
Sbjct: 431 GHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAH 490
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL++AG L++A E+I + + N+++WGALL GC+++R ++A + V +++ LE
Sbjct: 491 YGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELE 550
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N LL N+YA RW ++ ++R M + GI K+ PG S IEM +V++F A D+S
Sbjct: 551 PDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGI-KKTPGCSLIEMNGRVHEFVAGDRS 609
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP + I + L K+ + LKLA Y P++
Sbjct: 610 HPQTKNIDAKLDKMTQDLKLAGYSPDI 636
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 37/251 (14%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D+I+W +I+ Y++ +F E+ F M++ + P VT+ VLSAC+ L L G+
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 239
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA--- 118
++H YV + ++ + +A++DMYA CG +D +L +F + +++ W +I+ G
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299
Query: 119 -----------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLS 150
+ G+ EAL +F M NV+P+ T +SVL+
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359
Query: 151 ACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC H G +E G R ++ I ++ ++D+ K G ++ A + R Q
Sbjct: 360 ACAHLGALELGEWIRTYIDRN---KIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QR 415
Query: 209 NAVIWGALLGG 219
+ W A++ G
Sbjct: 416 DKFTWTAMIVG 426
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 5/276 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ W TMI YS+ + + + EM G+ PD+ T + AL+ G
Sbjct: 78 IPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYG 137
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V++ G +V++ +ALV MY CG LD + VF + ++ WN II
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E+ +F M + V P VT + VLSAC+ + G ++ S + +
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVESNLVL 256
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
M+D+ + G ++ AL + RS + + W ++ G NL +A N +
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSG---FTNLGEIDVARNYFDKMP 312
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ T +++ Y +R+ E ++ M+ ++
Sbjct: 313 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM--YAKCGSLDR 94
SP + ++L C ++D +++H ++ G + + + + ++ + G
Sbjct: 14 FSPPTHPLISLLETCE---SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 70
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F ++ E NLF WN++I G + F ++++ M+ V+P+ TF + T
Sbjct: 71 ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 130
Query: 155 AGLVEEGRR 163
+E GR+
Sbjct: 131 DIALEYGRQ 139
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+++WT M+T Y+Q EA+D F M+ GI PD++T + L++C+ L G
Sbjct: 359 LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG 418
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++ G+ +DVY+ SALV MYAKCGS+D + LVF ++ E+N+ W ++I G A H
Sbjct: 419 KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQH 478
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F++M + ++P+ VTF SVLSACTH GLVEEGR+ F SM Y I P VEH
Sbjct: 479 GRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 538
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C VDLL +AG LE+A +I + FQP +WGALL C++H ++E A ++ L+
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLD 598
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L N+YA R+ + K+R M++ + K PG SWIE++ KV+ F DKS
Sbjct: 599 PDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKE-PGQSWIEVDGKVHVFHVEDKS 657
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY+ L KL EQ+K YVP+ +L
Sbjct: 658 HPEAKEIYAELGKLTEQIKEQGYVPDTRFVL 688
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +++++WT +I Y+Q Q AL+ +M+ + ++P+++T ++L C AL+ G
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y++Q G+ ++++ +AL+ MY KCG L + +F L +++ W +++ G A
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL 377
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF EA+ +F RM + ++P+ +TF S L++C+ ++EG+ + GYS+ +V
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL--DVY 435
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + +K G ++DA L+ + + N V W A++ GC H
Sbjct: 436 LQSALVSMYAKCGSMDDA-RLVFNQMSERNVVAWTAMITGCAQH 478
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+I+SWT MI + Q EA + MK +G PD+VT ++L+A + L +G+++
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H+ + + G +++ +G++LV MYAKCG + ++ ++F KL EKN+ W +I G A G
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHY 181
AL + ++M V PN +T+ S+L CT +E G++ R++ + GY E+
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYI-IQSGYG--REIWVV 336
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + K G L++A +L + + V W A++ G
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTG 373
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 123/249 (49%), Gaps = 6/249 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ++ + ++ + + +EAL N M G +L CA L +L+ GRE+H
Sbjct: 60 DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G + Y+ + L+ MYAKCGSL + VF +R++N+ W ++IE
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGC 183
EA ++ M +P+ VTF+S+L+A T+ L++ G++ + + G + P V
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TS 237
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--P 241
+V + +K G + A ++I + N V W L+ G +++A + ++ E P
Sbjct: 238 LVGMYAKCGDISKA-QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAP 296
Query: 242 NNSGYCTLL 250
N Y ++L
Sbjct: 297 NKITYTSIL 305
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 224/327 (68%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SWT MI Y ++ +F+EAL+ F M+ + + PD+ TM +VL+ACAHLGAL+LG
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + D+++ +AL+DMY KCG +D++ +F ++ +++ F W ++I GLAV+
Sbjct: 392 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN 451
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL MF M+ ++ P+ +T+I VLSACTH GLV++GR+ FL MT + I P + H
Sbjct: 452 GHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAH 511
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL++AG L++A E+I + + N+++WGALL GC+++R ++A + V +++ LE
Sbjct: 512 YGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELE 571
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N LL N+YA RW ++ ++R M + GI K+ PG S IEM +V++F A D+S
Sbjct: 572 PDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGI-KKXPGCSLIEMNGRVHEFVAGDRS 630
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP + I + L K+ + LKLA Y P++
Sbjct: 631 HPQTKNIDAKLDKMTQDLKLAGYSPDI 657
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 37/251 (14%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D+I+W +I+ Y++ +F E+ F M++ + P VT+ VLSAC+ L L G+
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 260
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA--- 118
++H YV + ++ + +A++DMYA CG +D +L +F + +++ W +I+ G
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320
Query: 119 -----------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLS 150
+ G+ EAL +F M NV+P+ T +SVL+
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380
Query: 151 ACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC H G +E G R ++ I ++ ++D+ K G ++ A + R Q
Sbjct: 381 ACAHLGALELGEWIRTYIDRN---KIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QR 436
Query: 209 NAVIWGALLGG 219
+ W A++ G
Sbjct: 437 DKFTWTAMIVG 447
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 5/276 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ W TMI YS+ + + + EM G+ PD+ T + AL+ G
Sbjct: 99 IPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYG 158
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V++ G +V++ +ALV MY CG LD + VF + ++ WN II
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E+ +F M + V P VT + VLSAC+ + G ++ S + +
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVESNLVL 277
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
M+D+ + G ++ AL + RS + + + W ++ G NL +A N +
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSG---FTNLGEIDVARNYFDKMP 333
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ T +++ Y +R+ E ++ M+ ++
Sbjct: 334 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 35 SGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM--YAKCGSL 92
SP + ++L C ++D +++H ++ G + + + + ++ + G
Sbjct: 33 KSFSPPTHPLISLLETCE---SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDF 89
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ +F ++ E NLF WN++I G + F ++++ M+ V+P+ TF +
Sbjct: 90 QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 149
Query: 153 THAGLVEEGRR 163
T +E GR+
Sbjct: 150 TRDIALEYGRQ 160
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 219/324 (67%), Gaps = 1/324 (0%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
SWT+MI Y Q + +EA+ F +M+ +G+ ++VT+ VL+ACA LGALDLG IH Y
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 253
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ GF +V I + L+DMY KCG L+ + VF ++ E+ + W+++I GLA+HG A EAL
Sbjct: 254 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 313
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+F M +EPNGVTFI +L AC+H GL+ EGRR F SMT Y I P++EHYGCMVDL
Sbjct: 314 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 373
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
LS+AGLL +A E I + +PN V+WGALLG C++H+N+E+A A+ L+ L+P N GY
Sbjct: 374 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYY 433
Query: 248 TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEI 307
+L N+YAE RW + ++R MK+ + K+ PG S I ++ V++F A ++SHP +++I
Sbjct: 434 VVLSNIYAEAGRWEDTARVRKFMKDRQV-KKTPGWSSITVDGVVHEFVAGEESHPDTEQI 492
Query: 308 YSSLSKLDEQLKLASYVPELEAML 331
+ +L E+++L YVP +L
Sbjct: 493 FQRWEELLEEMRLKGYVPNTSVVL 516
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 39/244 (15%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W + + ++ +A+ F ++ + PD T ++VL AC +L L GR +H V
Sbjct: 129 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 188
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF ++++ Y +CG A EA+
Sbjct: 189 KVGF----RSWTSMIAGYVQCGK-------------------------------AKEAIH 213
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
+F +M V+ N VT ++VL+AC G ++ G R + + V ++D+
Sbjct: 214 LFAKMEEAGVKCNEVTVVAVLAACADLGALDLG-MRIHEYSNRHGFKRNVRISNTLIDMY 272
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGY 246
K G LE+A ++ + + V W A++GG +H E A +++ + +EPN +
Sbjct: 273 VKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 331
Query: 247 CTLL 250
LL
Sbjct: 332 IGLL 335
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SW+ MI + + + EAL F++M GI P+ VT +L AC+H+G + G
Sbjct: 288 MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEG 347
Query: 61 REIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
R + + G + +VD+ ++ G L + + K N W +++
Sbjct: 348 RRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACR 407
Query: 119 VH 120
VH
Sbjct: 408 VH 409
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 147/331 (44%), Positives = 219/331 (66%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI+++ MI Y+ + +EAL F+ ++ G+ PD+VT +L+ACA+ G+L+
Sbjct: 608 MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 667
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH V++ G+ D +G+ALV YAKCGS +LLVF K+ ++N+ WN+II G A H
Sbjct: 668 KEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQH 727
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + L +F+RM E ++P+ VTF+S+LSAC+HAGL+EEGRR F SM+ + ITP +EH
Sbjct: 728 GRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEH 787
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++ LI++ FQ N IWGALLG C++H N+ +A A + L+
Sbjct: 788 YGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLD 847
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+ L +MYA W K+R M++ G+ K PG SWIE+ K++ F A D+S
Sbjct: 848 PDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE-PGRSWIEVGDKLHYFVAEDRS 906
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY+ L KL +K+ YVP+ +++
Sbjct: 907 HPESEKIYAELDKLTHAMKMEGYVPDTRSVM 937
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DIISWT MI +++ EAL F +M+ +G+ P++VT ++L+AC+ ALD G
Sbjct: 507 MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWG 566
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V++ G D ++ + LV+MY+ CGS+ + VF ++ ++++ +N++I G A H
Sbjct: 567 RRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAH 626
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
EAL +FDR+ E ++P+ VT+I++L+AC ++G +E + L + GY +
Sbjct: 627 NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGY--LSDTS 684
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V +K G DAL L+ + N + W A++GGC H
Sbjct: 685 LGNALVSTYAKCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQH 727
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 130/221 (58%), Gaps = 4/221 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+I+W TMI ++ + EA + +++M+ G+ P+++T +L+AC + AL GREI
Sbjct: 409 RDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREI 468
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ GF D+ + +AL+ MYA+CGS+ + L+F K+ K++ W ++I GLA G
Sbjct: 469 HSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLG 528
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYG 182
EALA+F M ++PN VT+ S+L+AC+ ++ GRR + G + V +
Sbjct: 529 AEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVAN-- 586
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V++ S G ++DA ++ Q + V + A++GG H
Sbjct: 587 TLVNMYSMCGSVKDARQVF-DRMTQRDIVAYNAMIGGYAAH 626
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SWT +I Y+ A + F +M+ G+ P+++T VL+A + AL G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++ G + D+ +G+ALV MYAKCGS VF KL ++L WN++I GLA
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA ++ +M E + PN +T++ +L+AC + + G R S ++
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWG-REIHSRVVKDGFMFDISV 483
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++ + ++ G ++DA L+ + + + + W A++GG L +AV + M
Sbjct: 484 QNALISMYARCGSIKDA-RLLFNKMVRKDIISWTAMIGGLA-KSGLGAEALAVFQDMQQA 541
Query: 239 -LEPNNSGYCTLL 250
L+PN Y ++L
Sbjct: 542 GLKPNRVTYTSIL 554
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 120/251 (47%), Gaps = 8/251 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R + SW M+ Y Q EAL EM+ G++ + T +LS+C AL+ GREI
Sbjct: 207 RTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREI 266
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H+ M+ DV + + +++MYAKCGS+ + VF K+ K++ W II G A G +
Sbjct: 267 HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHS 326
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A +F +M E V PN +T+I+VL+A + ++ G + S ++
Sbjct: 327 EIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG-KTVHSHILNAGHESDLAVGTA 385
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL----EIAHIAVNELMIL 239
+V + +K G +D ++ + + W ++GG N EI H E M+
Sbjct: 386 LVKMYAKCGSYKDCRQVF-EKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM- 443
Query: 240 EPNNSGYCTLL 250
PN Y LL
Sbjct: 444 -PNKITYVILL 453
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 6/199 (3%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
A+D ++ G + +L C + L GRE+H +++Q +D Y +AL+
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183
Query: 84 DMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
+MY +CGS++ + V+ KL E+ + WN+++ G +G+ EAL + M +
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
T + +LS+C +E GR + + +V C++++ +K G + +A E+
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKA-RLLFDVNVANCILNMYAKCGSIHEAREVF 302
Query: 202 RSSKFQPNAVI-WGALLGG 219
K + +V+ W ++GG
Sbjct: 303 --DKMETKSVVSWTIIIGG 319
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 216/326 (66%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT MI Y + +F+E L F +M+ S + PD+ TM ++L+ACAHLGAL+LG
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG 391
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
Y+ + D +IG+AL+DMY KCG+++++ +F ++++K+ F W ++I GLA +
Sbjct: 392 EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANN 451
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL MF M+ +V P+ +T+I V+ ACTH GLV +G+ F +M + I P + H
Sbjct: 452 GHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTH 511
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++ALE+I + +PN+++WG+LLG C++H+N+++A +A NE++ LE
Sbjct: 512 YGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELE 571
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N LL N+YA +W + +R M E GI K+ PG S +EM VY+F A DKS
Sbjct: 572 PENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGI-KKIPGCSLMEMNGIVYEFVAGDKS 630
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY+ L + + L A Y P+
Sbjct: 631 HPQSKEIYAKLENMKQDLSNAGYSPD 656
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 123/251 (49%), Gaps = 40/251 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGRE 62
++++W +++ Y++ K++ E+ F EM K +SP+ VT+ +LSAC+ L L G+
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260
Query: 63 IH-LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA--- 118
I+ Y+ + + ++ + +AL+DM+A CG +D + VF +++ +++ W SI+ G A
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320
Query: 119 -----------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLS 150
+ G+ E L +F M NV+P+ T +S+L+
Sbjct: 321 RIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILT 380
Query: 151 ACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC H G +E G + ++ I + ++D+ K G +E A ++ + +
Sbjct: 381 ACAHLGALELGEWAKTYIDKN---KIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KK 436
Query: 209 NAVIWGALLGG 219
+ W A++ G
Sbjct: 437 DKFTWTAMIVG 447
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W TMI YS+ + + M I PD T +L AL G
Sbjct: 95 IPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYG 154
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ + + + GF D ++++ + +++ CG ++ + +F + WN ++ G
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR 214
Query: 120 HGFAHEALAMFDRMIY--ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
E+ +F M E V PN VT + +LSAC+ + G+ + + P
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++D+ + G ++ A + K + + + W +++ G
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTG 315
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 38/65 (58%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++ + ++F WN++I+G + + ++++ M+ N++P+G TF +L T
Sbjct: 91 VFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMA 150
Query: 158 VEEGR 162
++ G+
Sbjct: 151 LKYGK 155
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/325 (46%), Positives = 217/325 (66%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++ W MI Y + +EAL FNEM+ I+PD+VTM + LSAC+ LGALD+G
Sbjct: 300 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVG 359
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + ++V +G+AL+DMYAKCG + +++ VF +L +N W +II GLA+H
Sbjct: 360 IWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALH 419
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH A+A F MI +V P+ VTF+ +LSAC H GLVEEGR+ F M+ ++++P+++H
Sbjct: 420 GNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKH 479
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLE+A ELI+S + +AV+WGAL C++H N+ + A ++L+ ++
Sbjct: 480 YSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD 539
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL NMY E W E K R M++ G+EK PG S IE+ VY+F DKS
Sbjct: 540 PHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKT-PGCSSIEVNGIVYEFIVRDKS 598
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP S++IY L +L QL+L P
Sbjct: 599 HPQSEQIYECLIQLTRQLELVECTP 623
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 40/263 (15%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW +MI Y + EAL+ + EMK GI PD+VTM V+S+CA L LDLGRE
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 230
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H Y+ + G + V + +AL+DMY KCG+L+ + +F + K + W +++ G A
Sbjct: 231 HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLL 290
Query: 119 ---------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSAC 152
+ G+ H EALA+F+ M N+ P+ VT +S LSAC
Sbjct: 291 DMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSAC 350
Query: 153 THAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+ G ++ G ++ + ++ V ++D+ +K G + A+++ + + N+
Sbjct: 351 SQLGALDVGIWIHHYIEK---HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NS 406
Query: 211 VIWGALLGGCKLHRNLEIAHIAV 233
+ W A++ G LH N AH A+
Sbjct: 407 LTWTAIISGLALHGN---AHGAI 426
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 5/217 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ SW I + ++ REA+ + ++ G PD T + ACA L + +G EI
Sbjct: 70 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V+ +GFD D+++ +A++ + CG LD + +F K ++L WNS+I G G+A
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEHYG 182
+EAL + M E ++P+ VT I V+S+C ++ GR + G +T V
Sbjct: 190 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT--VPLAN 247
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K G LE A +L S V W ++ G
Sbjct: 248 ALMDMYMKCGNLESARKLFDSMT-NKTMVSWTTMVVG 283
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
++L C + L ++I ++ G D + S L+ A + LD + F R
Sbjct: 11 SLLEKCKSISQL---KQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTR 67
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGR 162
N F WN I G EA+ ++ R++ + +P+ T+ + AC L+ G
Sbjct: 68 NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG- 126
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L ++ ++ LL G L+ A ++ S + + V W +++ G
Sbjct: 127 SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVR-DLVSWNSMING 182
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 218/331 (65%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T+I + Q+ + + A D F M+ SGI PD++T +L+ACA AL G
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG 634
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + + FD DV +G+ L+ MY KCGS++ + VF KL +KN++ W S+I G A H
Sbjct: 635 RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQH 694
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M E V+P+ +TF+ LSAC HAGL+EEG F SM ++I P +EH
Sbjct: 695 GRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEH 753
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AGLL +A+E I + +P++ +WGALLG C++H N+E+A A + + L+
Sbjct: 754 YGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELD 813
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN++G +L N+YA W EV K+R M + G+ K+ PG SWIE++ KV+ F + DK+
Sbjct: 814 PNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKK-PGQSWIEVDGKVHTFYSDDKT 872
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++EI++ L +L +++ YVP+ +L
Sbjct: 873 HPQTEEIHAELERLHMEMRQLGYVPDTRYVL 903
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+++WT+MIT +++ +F++A + F M+ G+ PD+V ++L AC H AL+ G
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + ++G+D ++Y+G+A++ MY KCGS++ +L VF ++ +N+ W ++I G A H
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G EA F++MI +EPN VTF+S+L AC+ ++ G++ + + GY V
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ + +K G L+DA + Q N V W A++ H + A L+
Sbjct: 452 --TALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITAYVQHEQYDNALATFQALLKE 508
Query: 239 -LEPNNSGYCTLL 250
++PN+S + ++L
Sbjct: 509 GIKPNSSTFTSIL 521
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 143/253 (56%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ SW ++ Y Q+ + EA +M + PD+ T ++L+ACA +D G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE++ +++ G+D D+++G+AL++M+ KCG + + VF L ++L W S+I GLA H
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
G +A +F RM E V+P+ V F+S+L AC H +E+G++ M G+ E+
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT--EIY 348
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ + +K G +EDALE+ K + N V W A++ G H ++ A + N+++
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIES 407
Query: 239 -LEPNNSGYCTLL 250
+EPN + ++L
Sbjct: 408 GIEPNRVTFMSIL 420
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 4/230 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ R+++SWT MI ++Q+ + EA FN+M SGI P++VT ++L AC+ AL G
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++I ++++ G+ D + +AL+ MYAKCGSL + VF K+ ++N+ WN++I H
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQH 492
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
ALA F ++ E ++PN TF S+L+ C + +E G+ FL M G + ++
Sbjct: 493 EQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG--LESDLH 550
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+V + G L A L + + V W ++ G H ++A
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 116/220 (52%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W MIT Y Q++Q+ AL F + GI P+ T ++L+ C +L+LG+ +
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +M+ G + D+++ +ALV M+ CG L + +F + +++L WN+II G HG
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKN 596
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A F M ++P+ +TF +L+AC + EG RR ++ + +V
Sbjct: 597 QVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG-RRLHALITEAAFDCDVLVGTG 655
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + +K G +EDA ++ + N W +++ G H
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQH 694
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 118/227 (51%), Gaps = 4/227 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D ++ S+ QF EA+ + +S I + T + +L C L G I
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+ ++ + G D+++ + L++MYAKCG+ + +F +REK+++ WN ++ G HG
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYG 182
EA + ++M+ ++V+P+ TF+S+L+AC A V++GR + L + G+ V
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG--T 250
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++++ K G + DA ++ + + + V W +++ G H + A
Sbjct: 251 ALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQA 296
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/325 (46%), Positives = 217/325 (66%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++ W MI Y + +EAL FNEM+ I+PD+VTM + LSAC+ LGALD+G
Sbjct: 257 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVG 316
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + ++V +G+AL+DMYAKCG + +++ VF +L +N W +II GLA+H
Sbjct: 317 IWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALH 376
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH A+A F MI +V P+ VTF+ +LSAC H GLVEEGR+ F M+ ++++P+++H
Sbjct: 377 GNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKH 436
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLE+A ELI+S + +AV+WGAL C++H N+ + A ++L+ ++
Sbjct: 437 YSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD 496
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL NMY E W E K R M++ G+EK PG S IE+ VY+F DKS
Sbjct: 497 PHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKT-PGCSSIEVNGIVYEFIVRDKS 555
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP S++IY L +L QL+L P
Sbjct: 556 HPQSEQIYECLIQLTRQLELVECTP 580
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 137/248 (55%), Gaps = 25/248 (10%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW +MI Y + EAL+ + EMK GI PD+VTM V+S+CA L LDLGRE
Sbjct: 143 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 202
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDR----------------SLLVFFKLREKNL 107
H Y+ + G + V + +AL+DMY KCG+L+ + ++F ++ +K++
Sbjct: 203 HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDV 262
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--RRRF 165
WN++I G EALA+F+ M N+ P+ VT +S LSAC+ G ++ G +
Sbjct: 263 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 322
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
+ + ++ V ++D+ +K G + A+++ + + N++ W A++ G LH N
Sbjct: 323 IEK---HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 378
Query: 226 LEIAHIAV 233
AH A+
Sbjct: 379 ---AHGAI 383
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 21/256 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ SW I + ++ REA+ + ++ G PD T + ACA L + +G EI
Sbjct: 42 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V+ +GFD D+++ +A++ + CG LD + +F K ++L WNS+I G G+A
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 161
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEHYG 182
+EAL + M E ++P+ VT I V+S+C ++ GR + G +T V
Sbjct: 162 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT--VPLAN 219
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQ---------------PNAVIWGALLGGCKLHRNLE 227
++D+ K G LE A +L S + + V W A++GG +H N
Sbjct: 220 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGG-YVHANRG 278
Query: 228 IAHIAV-NELMILEPN 242
+A+ NE+ + N
Sbjct: 279 KEALALFNEMQAMNIN 294
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLS 150
LD + F R N F WN I G EA+ ++ R++ + +P+ T+ +
Sbjct: 28 LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
AC L+ G L ++ ++ LL G L+ A ++ S + +
Sbjct: 88 ACARLSLIRMG-SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVR-DL 145
Query: 211 VIWGALLGG 219
V W +++ G
Sbjct: 146 VSWNSMING 154
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 220/331 (66%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI+SW++MI Y+ N +EALD F +M N G PD M VL ACA LGAL+LG
Sbjct: 207 MLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + F + +G+AL+DMYAKCG +D + VF +R+K++ WN+ I GLA+
Sbjct: 267 NWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMS 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F +M +EP+G TF+ +L ACTHAGLV+EGR+ F SM +++TPE+EH
Sbjct: 327 GHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEH 386
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A +L++S + NA++WGALLGGC+LHR+ ++ + +L+ LE
Sbjct: 387 YGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALE 446
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+Y+ +W + KIR M E GI K+ PG SWIE++ V++F D S
Sbjct: 447 PSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGI-KKVPGYSWIEVDGVVHEFLVGDTS 505
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY+ L +L + LK + YVP + +L
Sbjct: 506 HPLSEKIYAKLGELVKDLKASGYVPTTDYVL 536
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 58/294 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + TMI N F+E+++ ++ M+ G+SPD T +L ACA L LG ++H
Sbjct: 72 NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH 131
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN------------------ 106
V++ G + D ++ ++LV +Y KCG +D + VF + EKN
Sbjct: 132 GLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCR 191
Query: 107 --------------------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+ W+S+I+G A +G EAL +F +M+ E P+ +
Sbjct: 192 EAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMV 251
Query: 147 SVLSACTHAGLVEEG--------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
VL AC G +E G R FL P + ++D+ +K G ++ A
Sbjct: 252 GVLCACARLGALELGNWASNLMDRNEFLG-------NPVLG--TALIDMYAKCGRMDSAW 302
Query: 199 ELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH--IAVNELMILEPNNSGYCTLL 250
E+ R + + + V+W A + G + +++ A E +EP+ + + LL
Sbjct: 303 EVFRGMR-KKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLL 355
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++++G D D Y+ + ++ G+ + S +F + +E N+F +N++I GL ++
Sbjct: 27 KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN 86
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E++ ++ M E + P+ TF +L AC R L G + V
Sbjct: 87 DSFQESIEIYHSMRKEGLSPDSFTFPFLLKACA----------RLLDSKLGIKLHGLVVK 136
Query: 181 YGC---------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GC +V L K G +++A ++ + N W A++ G
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISG 183
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 218/331 (65%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T+I + Q+ + + A D F M+ SGI PD++T +L+ACA AL G
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG 634
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + + FD DV +G+ L+ MY KCGS++ + VF KL +KN++ W S+I G A H
Sbjct: 635 RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQH 694
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M E V+P+ +TF+ LSAC HAGL+EEG F SM ++I P +EH
Sbjct: 695 GRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEH 753
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AGLL +A+E I + +P++ +WGALLG C++H N+E+A A + + L+
Sbjct: 754 YGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELD 813
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN++G +L N+YA W EV K+R M + G+ K+ PG SWIE++ KV+ F + DK+
Sbjct: 814 PNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKK-PGQSWIEVDGKVHTFYSDDKT 872
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++EI++ L +L +++ YVP+ +L
Sbjct: 873 HPQTEEIHAELERLHMEMRQLGYVPDTRYVL 903
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+++WT+MIT +++ +F++A + F M+ G+ PD+V ++L AC H AL+ G
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + ++G+D ++Y+G+A++ MY KCGS++ +L VF ++ +N+ W ++I G A H
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G EA F++MI +EPN VTF+S+L AC+ ++ G++ + + GY V
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ + +K G L+DA + Q N V W A++ H + A L+
Sbjct: 452 --TALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITAYVQHEQYDNALATFQALLKE 508
Query: 239 -LEPNNSGYCTLL 250
++PN+S + ++L
Sbjct: 509 GIKPNSSTFTSIL 521
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 143/253 (56%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ SW ++ Y Q+ + EA +M + PD+ T ++L+ACA +D G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE++ +++ G+D D+++G+AL++M+ KCG + + VF L ++L W S+I GLA H
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
G +A +F RM E V+P+ V F+S+L AC H +E+G++ M G+ E+
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT--EIY 348
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ + +K G +EDALE+ K + N V W A++ G H ++ A + N+++
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIES 407
Query: 239 -LEPNNSGYCTLL 250
+EPN + ++L
Sbjct: 408 GIEPNRVTFMSIL 420
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 4/230 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ R+++SWT MI ++Q+ + EA FN+M SGI P++VT ++L AC+ AL G
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++I ++++ G+ D + +AL+ MYAKCGSL + VF K+ ++N+ WN++I H
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQH 492
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
ALA F ++ E ++PN TF S+L+ C + +E G+ FL M G + ++
Sbjct: 493 EQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG--LESDLH 550
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+V + G L A L + + V W ++ G H ++A
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 116/220 (52%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W MIT Y Q++Q+ AL F + GI P+ T ++L+ C +L+LG+ +
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +M+ G + D+++ +ALV M+ CG L + +F + +++L WN+II G HG
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKN 596
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A F M ++P+ +TF +L+AC + EG RR ++ + +V
Sbjct: 597 QVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG-RRLHALITEAAFDCDVLVGTG 655
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + +K G +EDA ++ + N W +++ G H
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQH 694
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 118/227 (51%), Gaps = 4/227 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D ++ S+ QF EA+ + +S I + T + +L C L G I
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+ ++ + G D+++ + L++MYAKCG+ + +F +REK+++ WN ++ G HG
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYG 182
EA + ++M+ ++V+P+ TF+S+L+AC A V++GR + L + G+ V
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG--T 250
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++++ K G + DA ++ + + + V W +++ G H + A
Sbjct: 251 ALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQA 296
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 220/330 (66%), Gaps = 2/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R++++WT +I Y Q + F + + F EM S ++P++ T+++VLSACAH+GAL G
Sbjct: 266 MPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H YV++ +I+ +G+ L+D YAKCG L+ ++LVF +LREKN++ W ++I G A H
Sbjct: 326 RRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A A+ +F M+ +V PN VTFI VLSAC H GLVEEGRR FLSM +++ P+ +H
Sbjct: 386 GYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL + GLLE+A LI +P +WGAL G C +H++ E+ A + ++ L+
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQ 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG TLL N+Y+E W +V ++R MK+ + K PG SWIE++ K+++F A D
Sbjct: 506 PSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVK-SPGCSWIEVKGKLHEFIAFDDK 564
Query: 301 HP-ASDEIYSSLSKLDEQLKLASYVPELEA 329
P SD++Y +L + Q++L + +L +
Sbjct: 565 KPLESDDLYKTLDNVGVQMRLPDELEDLTS 594
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 11/225 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT MI + +N EA+ F EMK SG++ +++T+ +VL A + GR I
Sbjct: 167 KDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSI 226
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H + ++ G DV+IGS+LVDMY KCG D + VF ++ +N+ W ++I G
Sbjct: 227 HGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRC 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY- 181
+ + +F+ M+ +V PN T SVLSAC H G + GRR + C Y I +E
Sbjct: 287 FEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRR----VHC-YVIKNSIEINT 341
Query: 182 ---GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D +K G LE+A+ L+ + N W A++ G H
Sbjct: 342 TVGTTLIDFYAKCGCLEEAI-LVFERLREKNVYTWTAMINGFAAH 385
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 6/246 (2%)
Query: 9 WTTMITCYSQNKQFREALD--AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
W +++ +S L ++ +M+ +G+ P + T +L A L + + H +
Sbjct: 70 WDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDAN-PFQFHAH 128
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+++ GFD D+++ ++L+ Y+ CG + VF +K++ W ++I+G + + EA
Sbjct: 129 ILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEA 188
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ F M V N +T +SVL A A V GR + +V +VD
Sbjct: 189 MTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVD 248
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNS 244
+ K G +DA ++ + N V W AL+ G R E E++ + PN
Sbjct: 249 MYGKCGCYDDAQKVFDEMPSR-NVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEK 307
Query: 245 GYCTLL 250
++L
Sbjct: 308 TLSSVL 313
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/331 (44%), Positives = 214/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT +I Y+QN E+L+ FN+M+ +G+ D+ M +VLSACA L AL+LG
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG 161
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ H YV+Q GF +D+ +GSALVDMYAK GS++ + VF K+ ++N WNSII G A H
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++A+ +F++M+ ++PN ++F+ VLSAC+H GLV EGR F MT Y I P+V H
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++A I +P+ +WGALLG C++H N E+A L+ +E
Sbjct: 282 YTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGME 341
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+G LL N+YA +W + K+R MK+ G+ K+ PG SWIE++ ++ F A + S
Sbjct: 342 VQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQ-PGYSWIEVKTIMHAFVAGETS 400
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI+ L L ++K A YVP +L
Sbjct: 401 HPQLKEIHEFLESLSRKMKAAGYVPNKNFVL 431
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 130/252 (51%), Gaps = 35/252 (13%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M G+ P+Q T++TV+ ACA + +L+ G++ H Y++++GF+ DV + +ALV MYA+CGS
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 92 LD-------------------------------RSLLVFFKLREKNLFCWNSIIEGLAVH 120
L+ ++L +F+++ E+++ W ++I G A +
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ E+L +F++M ++ + SVLSAC +E G R+F + ++
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG-RQFHAYVVQSGFALDIVV 179
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+VD+ +K+G +EDA ++ Q N V W +++ GC H A + +++
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238
Query: 239 LEPNNSGYCTLL 250
++PN + +L
Sbjct: 239 IKPNEISFVGVL 250
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/325 (45%), Positives = 217/325 (66%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD+++W+ MI+ Y+Q Q REAL F+EM+ + + P+ VTM +VLSACA LGAL+ G
Sbjct: 281 MQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG 340
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + + + +G+ALVD YAKCG +D ++ F + KN + W ++I+G+A +
Sbjct: 341 KWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATN 400
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M ++EP VTFI VL AC+H+ LVEEGRR F SMT Y I P EH
Sbjct: 401 GRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEH 460
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGL+++A + IR+ +PNAVIW ALL C +H+N+EI A+ +++ L
Sbjct: 461 YGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLN 520
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL N+YA V +W IR MK+ GIEK PG S IE++ V +F A D
Sbjct: 521 PSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEK-TPGCSLIELDGVVVEFFAEDSD 579
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EIY + ++ +++K+A Y+P
Sbjct: 580 HPQLKEIYQKVEEMIDRIKMAGYIP 604
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 16/221 (7%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ W +IT Y +N + E ++ F M G++ D++T+ +V++AC +G LG+ +
Sbjct: 185 VVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAE 244
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
YV + G + + +AL+DMYAKCG L ++ +F ++ +++ W+++I G E
Sbjct: 245 YVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 304
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMTCGYSITPEV 178
ALA+F M VEPN VT +SVLSAC G +E G RR+ LS+T
Sbjct: 305 ALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTA--- 361
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD +K G ++DA+E S + N+ W AL+ G
Sbjct: 362 -----LVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKG 396
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 24 EALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
+AL F EM + + + PDQ T+A L +C+ + LD+GR I Y ++ G D ++ S+L
Sbjct: 101 DALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSL 160
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
+ MYA C + + L+F + E + WN+II +G E + MF M+ V +
Sbjct: 161 IHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDE 220
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGL 193
+T +SV++AC G + G+ + V+ G ++D+ +K G
Sbjct: 221 ITLVSVVTACGRIGDAKLGKW----------VAEYVDEKGLVRNRNLMTALIDMYAKCGE 270
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
L A L + + + V W A++ G A +E+ + +EPN+ ++L
Sbjct: 271 LGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVL 328
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/332 (44%), Positives = 222/332 (66%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
MP ++I +W +I+ Y QN + +EAL FNE++ S I+ PD+VT+ + LSACA LGA+DL
Sbjct: 319 MPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDL 378
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH+Y+ + G ++ ++ S+LVDMYAKCGSL+++L VF+ + E++++ W+++I GL +
Sbjct: 379 GGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGM 438
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A+ +F M V+PN VTF +VL AC+HAGLV+EGR F M Y + PE++
Sbjct: 439 HGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMK 498
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+L +AG LE+A+ELI P+A +WGALLG C LH N+E+ +A ++L+ L
Sbjct: 499 HYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKL 558
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G LL N+YA+ RW +V+++R M++ ++K PG S IE V++F D
Sbjct: 559 EPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKE-PGCSSIEANGNVHEFLVGDN 617
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP S IYS L ++ +LK Y P +L
Sbjct: 618 THPLSSNIYSKLEEIATKLKSVGYEPNKSHLL 649
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 48/259 (18%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI+ ++Q +AL+ F +M+ + P+ VTM VLSACA L+ GR +
Sbjct: 190 KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWV 249
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
Y+ + G +D+ + +A++DMY KCGS+D + +F ++ E+++F W +++G A
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDY 309
Query: 119 --------------------------VHGFAHEALAMFDRMIYENV-EPNGVTFISVLSA 151
+G EALA+F+ + + +P+ VT +S LSA
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369
Query: 152 CTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
C G ++ G +R + + C +VD+ +K G LE ALE+ S
Sbjct: 370 CAQLGAIDLGGWIHVYIKREGIVLNCHL--------ISSLVDMYAKCGSLEKALEVFYSV 421
Query: 205 KFQPNAVIWGALLGGCKLH 223
+ + + +W A++ G +H
Sbjct: 422 E-ERDVYVWSAMIAGLGMH 439
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 11/245 (4%)
Query: 1 MPARDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ +W T+I Y S + F+ + + + P++ T V+ A + L A +
Sbjct: 85 IPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRV 144
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H +++ F +D+YI ++LV Y CG L + +F + K++ WNS+I A
Sbjct: 145 GTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQ 204
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SIT 175
+AL +F +M ENV PN VT + VLSAC +E GR C Y I
Sbjct: 205 GNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGR-----WVCSYIERKGIK 259
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
++ M+D+ +K G ++DA +L + + W +L G + + A + N
Sbjct: 260 VDLTLCNAMLDMYTKCGSVDDAQKLFDEMP-ERDVFSWTIMLDGYAKMGDYDAARLVFNA 318
Query: 236 LMILE 240
+ + E
Sbjct: 319 MPVKE 323
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 112/294 (38%), Gaps = 59/294 (20%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
+L F+ + N+ + + ++T+ C+ L +E+H +++ G D + S L
Sbjct: 10 SLQNFSTLNNNLLFRNHQILSTI-DKCSSSKQL---KEVHARMLRTGLFFDPFSASKLFT 65
Query: 85 MYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PN 141
A +LD + +F ++ + NL+ WN++I A ++ +F ++ + + PN
Sbjct: 66 ASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPN 125
Query: 142 GVTFISVLSACTH-----------------------------------AGLVEEGRRRFL 166
TF V+ A + G + R F
Sbjct: 126 KFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFK 185
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCKLH 223
++C +V + M+ ++ EDALEL + PN+V +L C
Sbjct: 186 GISC-----KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKK 240
Query: 224 RNLEI-----AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
+LE ++I + + + C +L+MY + + K+ M E
Sbjct: 241 LDLEFGRWVCSYIERKGIKV----DLTLCNAMLDMYTKCGSVDDAQKLFDEMPE 290
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 216/327 (66%), Gaps = 3/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W MIT Y+QN EA+ F +M+ S +PDQ+T+ +LSACA +GALDLG
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++ +Y + GF DVY+G+ALVDMYAKCGSLD + VF+ + +KN WN++I LA H
Sbjct: 349 KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFH 408
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EALA+F M+ E V PN +TF+ VLSAC HAGLV+EGRR F M+ + + P++
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDL S+AG LE+A + + + +P+ VI GALLG C+ +N++I+ + L+
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLE 528
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP+NSG + +YA + RW + ++R+ MK+ G+ K PG SWI++ ++++F A D
Sbjct: 529 LEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSK-TPGCSWIDINSQLHEFHAGD 587
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVP 325
H EI+ L L + L+ Y+P
Sbjct: 588 VLHQEWIEIHQILDLLIDDLRREGYIP 614
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 136/252 (53%), Gaps = 8/252 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI+ YS+ + EA+ F EM +G P+++++ +VL AC LG L LG +
Sbjct: 191 KDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWV 250
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V++ ++ ++GSAL+ MY KCG L + +F +++K+ WN++I G A +G +
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
EA+ +F M + P+ +T I +LSAC G ++ G++ + G+ +V
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQ--DDVYVGT 368
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN----LEIAHIAVNELMI 238
+VD+ +K G L++A + + N V W A++ H L + +NE
Sbjct: 369 ALVDMYAKCGSLDNAFRVFYGMP-KKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGT 427
Query: 239 LEPNNSGYCTLL 250
+ PN+ + +L
Sbjct: 428 VSPNDITFVGVL 439
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 14/226 (6%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
AL+ ++ MK G+ P+ +T + AC++L A++ GR H V++ G D D ++ +L+
Sbjct: 111 ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLIT 170
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MYA+CG + + VF ++ +K+L WNS+I G + A EA+ +F M+ +PN ++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230
Query: 145 FISVLSACTHAGLVEEGR--RRFL---SMTCGYSITPEVEH-YGCMVDLLSKAGLLEDAL 198
+SVL AC G ++ G F+ MT Y + + H YG DL+S + +
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFD--- 287
Query: 199 ELIRSSKFQPNAVIWGALLGG-----CKLHRNLEIAHIAVNELMIL 239
+ + K NA+I G G KL +++ ++ A +++ ++
Sbjct: 288 SMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLI 333
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 213/324 (65%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWT +I Y+Q + EA+ F M+ + PD++ M LSACAHLGAL+LG
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG 290
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + G V + +AL+DMYAKCG ++++L VF + K++ W S+I+GLA+H
Sbjct: 291 EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALH 350
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL MF M ++PN +TF+++LSAC H GLVE GR F M Y I P+++H
Sbjct: 351 GLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQH 410
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L++A EL+R F+ NA IWG+LL ++H + E+ A+ L+ +E
Sbjct: 411 YGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVE 470
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG TLL N+YA S+W E +R M++ G+ K+ PG S IE+ +V++F A DK
Sbjct: 471 PHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGV-KKMPGGSCIEVNNRVHEFVAGDKL 529
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP S+ I+ L KJ+ Q K+A YV
Sbjct: 530 HPQSERIFEVLCKJNLQSKIAMYV 553
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 33/250 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI + T+I S + EA+ +N + S + D ++ VL A L A+ +GR+IH
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIH 162
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCG-------------------------------SLD 93
+ G D+++ +AL+ MY+ CG +D
Sbjct: 163 CQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVD 222
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ E+N+ W ++I G A +EA+ MF RM E VEP+ + ++ LSAC
Sbjct: 223 NARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACA 282
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G + + ++ V ++D+ +K G +E ALE+ ++ + + + + W
Sbjct: 283 HLGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK-SVITW 340
Query: 214 GALLGGCKLH 223
+++ G LH
Sbjct: 341 TSMIDGLALH 350
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
++L C++L L + H +++ G D D + S ++ + G S +F
Sbjct: 46 SLLKQCSNLKHL---HQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
+++ +N+II+ L+ A EA+ +++R++ ++ + + VL A + G R+
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVG-RQI 161
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G + ++ ++ + S G + +A +L F+ + W A++ G
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFR-DVAFWNAMVAG 214
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 215/327 (65%), Gaps = 3/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W MIT Y+QN EA+ F +M+ S +PDQ+T+ +LSACA +GALDLG
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++ +Y + GF DVY+G+ALVDMYAKCGSLD + VF+ + KN WN++I LA H
Sbjct: 349 KQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFH 408
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EALA+F M+ E V PN +TF+ VLSAC HAGLV+EGRR F M+ + + P++
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDL S+AG LE+A + + + +P+ VI GALLG C+ +N++I+ + L+
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLE 528
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP+NSG + +YA + RW + ++R+ MK+ G+ K PG SWI++ ++++F A D
Sbjct: 529 LEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSK-TPGCSWIDINSQLHEFHAGD 587
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVP 325
H EI+ L L + L+ Y+P
Sbjct: 588 VLHQEWIEIHQILDLLIDDLRREGYIP 614
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 8/252 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI+ YS+ + EA+ F EM +G P+++++ +VL AC LG L LG +
Sbjct: 191 KDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWV 250
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V++ ++ ++GSAL+ MY KCG L + +F +++K+ WN++I G A +G +
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
EA+ +F M + P+ +T I +LSAC G ++ G++ + G+ +V
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQ--DDVYVGT 368
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN----LEIAHIAVNELMI 238
+VD+ +K G L++A + N V W A++ H L + +NE
Sbjct: 369 ALVDMYAKCGSLDNAFRVFYGMP-NKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGT 427
Query: 239 LEPNNSGYCTLL 250
+ PN+ + +L
Sbjct: 428 VSPNDITFVGVL 439
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 14/226 (6%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
AL+ ++ MK G+ P+ +T + AC++L A++ GR H V++ G D D ++ +L+
Sbjct: 111 ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLIT 170
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MYA+CG + + VF ++ +K+L WNS+I G + A EA+ +F M+ +PN ++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230
Query: 145 FISVLSACTHAGLVEEGR--RRFL---SMTCGYSITPEVEH-YGCMVDLLSKAGLLEDAL 198
+SVL AC G ++ G F+ MT Y + + H YG DL+S + +
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFD--- 287
Query: 199 ELIRSSKFQPNAVIWGALLGG-----CKLHRNLEIAHIAVNELMIL 239
+ + K NA+I G G KL +++ ++ A +++ ++
Sbjct: 288 SMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLI 333
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 222/331 (67%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++W ++I Y+ N + EAL F EM G+ PD TM ++LSACA LGAL LG
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 260
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H+Y++++G D +++ G+AL+D+YAKCGS+ ++ VF ++ EK++ W S+I GLAV+
Sbjct: 261 RRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVN 320
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F + + + P+ +TF+ VL AC+H G+V+EG F M Y I P++EH
Sbjct: 321 GFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL++ A E I++ QPNAV+W LLG C +H +L + +A +L+ LE
Sbjct: 381 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLE 440
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA RW++V K+R M G+ K+ PG S +E+ ++++F D+S
Sbjct: 441 PKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGV-KKTPGHSLVELRNRLHEFVMGDRS 499
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++EIY L+++ + LKL YVP + +L
Sbjct: 500 HPQTEEIYVKLAEITKLLKLEGYVPHISNVL 530
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 117/215 (54%), Gaps = 2/215 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I +W TMI Y++++ AL+ + +M S I PD T +L A A L + G ++H
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVH 163
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF+ V++ + LV MYA CG + + +F + E+NL WNS+I G A++G +
Sbjct: 164 SIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPN 223
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F M VEP+G T +S+LSAC G + GRR + M + + +
Sbjct: 224 EALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV-KVGLDGNLHAGNAL 282
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+DL +K G + A ++ + + + V W +L+ G
Sbjct: 283 LDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVG 316
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 7/220 (3%)
Query: 61 REIHLYVMQIGFDI-DVYIGSALV-DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R+IH + ++ G + + +G L+ + + C + + +F +++ N+F WN++I G A
Sbjct: 57 RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPE 177
AL ++ +M +EP+ T+ +L A V EG + +++ G+
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVF 176
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V+ +V + + G E A +L + N V W +++ G L+ A E+
Sbjct: 177 VQ--NTLVHMYAACGHAESAHKLFELMA-ERNLVTWNSVINGYALNGRPNEALTLFREMG 233
Query: 238 ILEPNNSGYCTL-LLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ G+ + LL+ AE+ A + V M ++G++
Sbjct: 234 LRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 273
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 214/325 (65%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD+++W+ MI+ Y+Q Q REAL F+EM+ + + P+ VTM +VLSACA LGAL+ G
Sbjct: 282 MQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETG 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV + + +G+ALVD YAKCG +D ++ F + KN + W ++I+G+A +
Sbjct: 342 KWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATN 401
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M +EP VTFI VL AC+H+ LVEEGRR F SM Y I P VEH
Sbjct: 402 GRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEH 461
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+++A + IR+ +PNAVIW ALL C +HRN+ I A+ +++ L
Sbjct: 462 YGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLN 521
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL N+YA +W + +R MK+ GIEK PG S IE++ V++F A D
Sbjct: 522 PSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEK-TPGCSLIELDGVVFEFFAEDSD 580
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EIY + ++ ++K+A YVP
Sbjct: 581 HPELREIYQKVEEMIGRIKVAGYVP 605
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 16/221 (7%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ W ++ Y +N + E ++ F M G++ D+VT+ +V++AC +G LG+ +
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+V + G + + +AL+DMYAKCG + ++ +F ++ +++ W+++I G E
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 305
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMTCGYSITPEV 178
AL +F M VEPN VT +SVLSAC G +E G RR+ LS+T
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTA--- 362
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD +K G ++DA+E S + N+ W AL+ G
Sbjct: 363 -----LVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKG 397
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 16/251 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALDL 59
P + ++ + +AL F EM + S DQ T A L +C+ + ALD+
Sbjct: 79 PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + Y ++ G D ++ S+L+ MYA CG + + LVF E + WN+I+
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEV 178
+G E + MF M+ V + VT +SV++AC G + G+ + G + P++
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKL 258
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG------CK----LHRNLEI 228
++D+ +K G + A L + + + V W A++ G C+ L +++
Sbjct: 259 --VTALMDMYAKCGEIGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREALGLFSEMQL 315
Query: 229 AHIAVNELMIL 239
A + N++ ++
Sbjct: 316 ARVEPNDVTMV 326
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 214/326 (65%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWT +I Y+Q + EA+ F M+ + PD++ M LSACAHLGAL+LG
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG 290
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + G V + +AL+DMYAKCG ++++L VF + K++ W S+I+GLA+H
Sbjct: 291 EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALH 350
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL MF M ++PN +TF+++LSAC H GLVE GR F M Y I P+++H
Sbjct: 351 GLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQH 410
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L++A EL+R F+ NA IWG+LL ++H + E+ A+ L+ +E
Sbjct: 411 YGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVE 470
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG TLL N+YA S+W E +R M++ G+ K+ PG S IE+ +V++F A DK
Sbjct: 471 PHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGV-KKMPGGSCIEVNNRVHEFVAGDKL 529
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S+ I+ L K++ Q K+A YV +
Sbjct: 530 HPQSERIFEVLCKINLQSKIAMYVQK 555
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 33/250 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI + T+I S + EA+ +N + S + D ++ VL A L A+ +GR+IH
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIH 162
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCG-------------------------------SLD 93
+ G D+++ +AL+ MY+ CG +D
Sbjct: 163 CQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVD 222
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ E+N+ W ++I G A +EA+ MF RM E VEP+ + ++ LSAC
Sbjct: 223 NARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACA 282
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G + + ++ V ++D+ +K G +E ALE+ ++ + + + + W
Sbjct: 283 HLGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHK-SVITW 340
Query: 214 GALLGGCKLH 223
+++ G LH
Sbjct: 341 TSMIDGLALH 350
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
++L C++L L + H +++ G D D + S ++ + G S +F
Sbjct: 46 SLLKQCSNLKHL---HQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
+++ +N+II+ L+ A EA+ +++R++ ++ + + VL A + G R+
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVG-RQI 161
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G + ++ ++ + S G + +A +L F+ + W A++ G
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFR-DVAFWNAMVAG 214
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/321 (45%), Positives = 215/321 (66%), Gaps = 1/321 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M+ CY+Q + EAL F++M+ G+ P + T+ ++LSACAHLGALD G
Sbjct: 174 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ +++ +G+ALVDMYAKCG + + VF + K++ WN+II G+A+H
Sbjct: 234 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 293
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M VEPN +TF+++LSAC+HAG+V+EG++ M+ Y I P+VEH
Sbjct: 294 GHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 353
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DLL++AGLLE+A+ELI + +PN GALLGGC++H N E+ + L+ L+
Sbjct: 354 YGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQ 413
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA +W + K+R MK GI K PG S IE++ V++F A D S
Sbjct: 414 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK-VPGVSVIELKGMVHRFVAGDWS 472
Query: 301 HPASDEIYSSLSKLDEQLKLA 321
HP S++IY L+++ +LK A
Sbjct: 473 HPESNKIYEKLNEIHTRLKSA 493
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G D + +F ++ +++ WNS++ A G +EALA+FD+M V+P T +S+L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC H G +++G + I +VD+ +K G + A ++ + + + +
Sbjct: 222 SACAHLGALDKGLHLHTYIN-DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK-D 279
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
+ W ++ G +H +++ A E+ +EPN+ + +L
Sbjct: 280 VLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAML 322
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 219/327 (66%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++ W +I + Q K+ +EAL F+EM+ S ++PD++T+ LSAC+ LGALD+G
Sbjct: 348 MPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVG 407
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H YV + ++V +G+ALVDMYAKCG++ +++ VF ++ +N W +II GLA+H
Sbjct: 408 IWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALH 467
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H A++ F MI + P+ +TFI VLSAC H GLV++GR F MT Y I+P+++H
Sbjct: 468 GQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKH 527
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG LE+A ELIRS F+P+AV+WGAL G ++H N+ + A ++L+ L+
Sbjct: 528 YSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELD 587
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G LL NMY + + W + K+R M+E G+EK PG S IEM VY F DKS
Sbjct: 588 PHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEK-TPGCSSIEMNGLVYDFIIRDKS 646
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S++IY L++L Q+++ P L
Sbjct: 647 HPQSEKIYECLTRLTRQIEVIEVDPSL 673
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 37/253 (14%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW ++I Y + EA D + +M + PD+VTM V+SA A L L LGR++
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKC-------------------------------GSL 92
H + ++G ++ V + +AL+DMY KC G L
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLL 338
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ ++ +F ++ EK++ WN++I G + EALA+F M +V P+ +T ++ LSAC
Sbjct: 339 ESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSAC 398
Query: 153 THAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+ G ++ G ++ +++T V +VD+ +K G ++ A+++ + N+
Sbjct: 399 SQLGALDVGIWMHHYVD---KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NS 454
Query: 211 VIWGALLGGCKLH 223
+ W A++ G LH
Sbjct: 455 LTWTAIICGLALH 467
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 32/246 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREI 63
+ SW I Y +++ A+ + M G + PD T + CA EI
Sbjct: 118 NXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V+Q+GFD D+++ +A++ + CG L + +F + ++L WNSII G G A
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSIT------- 175
EA ++ +M NV P+ VT I V+SA + GR+ S+ G ++T
Sbjct: 238 DEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANAL 297
Query: 176 ----------------------PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
V + MV +K GLLE A+ L + + V+W
Sbjct: 298 MDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP-EKDVVLW 356
Query: 214 GALLGG 219
AL+GG
Sbjct: 357 NALIGG 362
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 219/327 (66%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++ W +I + Q K+ +EAL F+EM+ S ++PD++T+ LSAC+ LGALD+G
Sbjct: 348 MPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVG 407
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H YV + ++V +G+ALVDMYAKCG++ +++ VF ++ +N W +II GLA+H
Sbjct: 408 IWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALH 467
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H A++ F MI + P+ +TFI VLSAC H GLV++GR F MT Y I+P+++H
Sbjct: 468 GQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKH 527
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG LE+A ELIRS F+P+AV+WGAL G ++H N+ + A ++L+ L+
Sbjct: 528 YSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELD 587
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G LL NMY + + W + K+R M+E G+EK PG S IEM VY F DKS
Sbjct: 588 PHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEK-TPGCSSIEMNGLVYDFIIRDKS 646
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S++IY L++L Q+++ P L
Sbjct: 647 HPQSEKIYECLTRLTRQIEVIEVDPSL 673
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 37/253 (14%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW ++I Y + EA D + +M + PD+VTM V+SA A L L LGR++
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKC-------------------------------GSL 92
H + ++G ++ V + +AL+DMY KC G L
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLL 338
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ ++ +F ++ EK++ WN++I G + EALA+F M +V P+ +T ++ LSAC
Sbjct: 339 ESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSAC 398
Query: 153 THAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+ G ++ G ++ +++T V +VD+ +K G ++ A+++ + N+
Sbjct: 399 SQLGALDVGIWMHHYVD---KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NS 454
Query: 211 VIWGALLGGCKLH 223
+ W A++ G LH
Sbjct: 455 LTWTAIICGLALH 467
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 32/246 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREI 63
++ SW I Y +++ A+ + M G + PD T + CA EI
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V+Q+GFD D+++ +A++ + CG L + +F + ++L WNSII G G A
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSIT------- 175
EA ++ +M NV P+ VT I V+SA + GR+ S+ G ++T
Sbjct: 238 DEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANAL 297
Query: 176 ----------------------PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
V + MV +K GLLE A+ L + + V+W
Sbjct: 298 MDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP-EKDVVLW 356
Query: 214 GALLGG 219
AL+GG
Sbjct: 357 NALIGG 362
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 221/330 (66%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALDLGR 61
RD++SW +MI Y+QN EA+ +++M N GI + V ++ VL ACAH GA+ G+
Sbjct: 117 RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK 176
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V+++G + +VY+G+++VDMY+KCG ++ + F K++EKN+ W+++I G +HG
Sbjct: 177 HIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 236
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M + PN +TFISVL+AC+HAGL++EGR + +M + I VEHY
Sbjct: 237 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 296
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG L++A LI+ K +P+A IWGALL C++H+N+E+A ++V L L+
Sbjct: 297 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDA 356
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+NSGY LL N+YAE W +V +IR+ +K IEK PG S E++ K+Y F DKSH
Sbjct: 357 SNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEK-PPGYSSFELKGKIYLFYVGDKSH 415
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIYS L KL E+++ A YVP ++L
Sbjct: 416 PQHIEIYSYLEKLLERMQEAGYVPNTGSVL 445
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 7/228 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
+P + + T M + Y +N +L+ F M +S D+ SA A +
Sbjct: 10 IPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG 69
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL-VFFKLREKNLFCWNSIIEGL 117
+ +H + +IGF+ + + + ++D YAK GS D + F E+++ WNS+I
Sbjct: 70 VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMERDVVSWNSMIALY 129
Query: 118 AVHGFAHEALAMFDRM--IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
A +G + EA+ ++ +M + ++ N V +VL AC HAG ++ G + + +
Sbjct: 130 AQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG-KHIHNQVVRMGLE 188
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V +VD+ SK G +E A R K + N + W A++ G +H
Sbjct: 189 ENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMH 235
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 220/330 (66%), Gaps = 2/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R++++WT +I Y Q++ F + + F EM S ++P++ T+++VLSACAH+GAL G
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+++ +I+ G+ L+D+Y KCG L+ ++LVF +L EKN++ W ++I G A H
Sbjct: 326 RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +A +F M+ +V PN VTF++VLSAC H GLVEEGRR FLSM +++ P+ +H
Sbjct: 386 GYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL + GLLE+A LI +P V+WGAL G C LH++ E+ A + ++ L+
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQ 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG TLL N+Y+E W EV ++R MK+ + K PG SWIE++ K+ +F A D
Sbjct: 506 PSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVK-SPGFSWIEVKGKLCEFIAFDDK 564
Query: 301 HP-ASDEIYSSLSKLDEQLKLASYVPELEA 329
P SD++Y +L + Q++L + ++ A
Sbjct: 565 KPLESDDLYKTLDTVGVQMRLPDELEDVTA 594
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++WT MI + +N EA+ F EMK +G++ +++T+ +VL A + + GR +
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV 226
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ G DV+IGS+LVDMY KC D + VF ++ +N+ W ++I G
Sbjct: 227 HGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ + +F+ M+ +V PN T SVLSAC H G + GRR M SI
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGT 345
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++DL K G LE+A+ L+ + N W A++ G H
Sbjct: 346 TLIDLYVKCGCLEEAI-LVFERLHEKNVYTWTAMINGFAAH 385
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 8/247 (3%)
Query: 9 WTTMITCYSQNKQFREALD--AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
W ++I +S L A+ M+ +G+ P + T +L A L + + H +
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAH 128
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+++ G D D ++ ++L+ Y+ G D + +F +K++ W ++I+G +G A EA
Sbjct: 129 IVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA 188
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
+ F M V N +T +SVL A V GR L + G + +V +V
Sbjct: 189 MVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG-RVKCDVFIGSSLV 247
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNN 243
D+ K +DA ++ + N V W AL+ G R + + E++ + PN
Sbjct: 248 DMYGKCSCYDDAQKVFDEMPSR-NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNE 306
Query: 244 SGYCTLL 250
++L
Sbjct: 307 KTLSSVL 313
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 214/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++ SW +I Y++N F E L AF M G + P+ T+ VLSACA LGALDL
Sbjct: 205 MPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDL 264
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y G+ +VY+ +AL+DMYAKCG ++ +L VF + K+L WN+II GLAV
Sbjct: 265 GKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAV 324
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F M P+G+TFI +L ACTH GLVE+G F SMT YSI P +E
Sbjct: 325 HGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIE 384
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC+VDLL +AGLL A++ IR + +AVIW ALLG C++++N+E+A +A+ +L+
Sbjct: 385 HYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEF 444
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N +L N+Y + RW +V +++VAM++ G K+ PG S IE+ + +F + D+
Sbjct: 445 EPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGF-KKLPGCSLIEVNDYLVEFYSLDE 503
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
HP ++IY +L L + L+ + YVP L
Sbjct: 504 RHPEKEQIYGTLRTLTKLLRSSGYVPGL 531
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 9/222 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W M YSQN+ ++ + F +MK + P+ T +L +C + AL G
Sbjct: 11 IPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEG 70
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H +V++ GF + ++ + L+DMYA G++ + VF ++ E+N+ W ++I G
Sbjct: 71 EEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITC 130
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG--YSITPEV 178
A +FD ++ V + +++S A V R F M S +
Sbjct: 131 CDLVTARRLFDLAPERDI----VLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVL 186
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
Y D+++ L E E+ + F NA+I G GC
Sbjct: 187 NGYASNGDVMACERLFE---EMPERNVFSWNALIGGYTRNGC 225
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 44/224 (19%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RDI+ W TMI+ Y + K A + F++M N D ++ TVL+
Sbjct: 144 PERDIVLWNTMISGYIEAKDVIRARELFDKMPNK----DVMSWNTVLNG----------- 188
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
YA G + +F ++ E+N+F WN++I G +G
Sbjct: 189 ------------------------YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNG 224
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
E L+ F RM+ + V PN T ++VLSAC G ++ G+ + + GY V
Sbjct: 225 CFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVR 284
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G++E AL++ +S + + W ++GG +H
Sbjct: 285 N--ALMDMYAKCGVVETALDVFKSMD-NKDLISWNTIIGGLAVH 325
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++ E N WN++ G + + + + +F +M +V PN TF +L +C
Sbjct: 7 VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66
Query: 158 VEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
++EG + G+ P V ++D+ + G + A + + N + W A+
Sbjct: 67 LKEGEEVHCFVIKSGFRANPFVAT--TLIDMYASGGAIHAAYRVF-GEMIERNVIAWTAM 123
Query: 217 LGG 219
+ G
Sbjct: 124 ING 126
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/325 (45%), Positives = 215/325 (66%), Gaps = 1/325 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++ SW +IT Q EA+D + MK + P+++T+ VLSACA LGAL+LGRE+
Sbjct: 292 KNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREV 351
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
HLY+ + G D++V + +ALVDMYAKCG +D + L+F K EK++ WN++I GLA HG
Sbjct: 352 HLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDG 411
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
++LA+F +M+ V+PN VTFI VLSAC H+GLVEEGR +F SM + ++P++EHY C
Sbjct: 412 RDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYAC 471
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L++A EL+++ P+++IWGALL C++HRNLE+A +M + N
Sbjct: 472 MVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPN 531
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G+C LL N+YA RW +V ++R +KE I K+ G SW+E++ V++F D +H
Sbjct: 532 IGFCILLSNIYASSGRWKDVARVRRQVKEKRI-KKPSGCSWVEVDGVVHRFVVEDTTHLK 590
Query: 304 SDEIYSSLSKLDEQLKLASYVPELE 328
S EIY + L LK YV +
Sbjct: 591 SGEIYGAYEILVNHLKAEGYVANFD 615
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 137/256 (53%), Gaps = 9/256 (3%)
Query: 1 MPAR-DIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGAL 57
MP R +++ WT MI Y + F E L F +M S + P+ TM +LSAC+ L
Sbjct: 185 MPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNY 244
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
++GR + +++ ++ + +AL+DMY+KCG ++++ +F + KNL WN+II G
Sbjct: 245 EVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGC 304
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G EA+ ++ M ++V+PN +T ++VLSAC G +E GR L + +
Sbjct: 305 VQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRN-GLDLN 363
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V +VD+ +K G ++DA LI + + +W A++ G H + + +AV M
Sbjct: 364 VILATALVDMYAKCGKIDDAC-LIFVKTSEKDVALWNAMILGLAYHGDGRDS-LAVFSQM 421
Query: 238 I---LEPNNSGYCTLL 250
+ ++PN+ + +L
Sbjct: 422 VRAGVQPNDVTFIGVL 437
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 48/284 (16%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P+ SW ++I Y+ + + +L + +M S P T VL AC+ LG++ G
Sbjct: 54 PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD---------------------------- 93
+IH +V+++GF D+++ ++L+DMY KC LD
Sbjct: 114 QIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWG 173
Query: 94 -----RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY--ENVEPNGVTFI 146
R L +R +N+ CW ++I G G E L++F +M+ + V+PN T +
Sbjct: 174 QVEKARDLFEEMPMR-RNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMV 232
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIR--S 203
+LSAC+ E G RFLS+ + P ++D+ SK G +E A + S
Sbjct: 233 CLLSACSTLCNYEVG--RFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVS 290
Query: 204 SKFQP--NAVIWGALLGG-----CKLHRNLEIAHIAVNELMILE 240
K P NA+I G + GG L+R+++ + NE+ ++
Sbjct: 291 CKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVN 334
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH + G + ++ L+D++ S+D + V + F WNS+I VHG
Sbjct: 17 QIHAQTLIHGLPLQTHLIPKLIDLH----SIDYARFVLDQTPSPTDFSWNSLIRAYTVHG 72
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+L ++ +M+ + +P+ TF VL AC+ G V EG +
Sbjct: 73 SPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQ 114
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 222/331 (67%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++W ++I Y+ N + EAL F EM G+ PD TM ++LSACA LGAL LG
Sbjct: 56 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 115
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H+Y++++G D +++ G+AL+D+YAKCGS+ ++ VF ++ EK++ W S+I GLAV+
Sbjct: 116 RRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVN 175
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F + + + P+ +TF+ VL AC+H G+V+EG F M Y I P++EH
Sbjct: 176 GFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH 235
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL++ A E I++ QPNAV+W LLG C +H +L + +A +L+ LE
Sbjct: 236 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLE 295
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA RW++V K+R M G+ K+ PG S +E+ ++++F D+S
Sbjct: 296 PKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGV-KKTPGHSLVELRNRLHEFVMGDRS 354
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++EIY L+++ + LKL YVP + +L
Sbjct: 355 HPQTEEIYVKLAEITKLLKLEGYVPHISNVL 385
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 2/170 (1%)
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
A A L + G ++H ++ GF+ V++ + LV MYA CG + + +F + E+NL
Sbjct: 4 AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WNS+I G A++G +EAL +F M VEP+G T +S+LSAC G + GRR + M
Sbjct: 64 WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + ++DL +K G + A ++ + + + V W +L+ G
Sbjct: 124 -KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVG 171
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 221/330 (66%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALDLGR 61
RD++SW +MI Y+QN EA+ +++M N GI + V ++ VL ACAH GA+ G+
Sbjct: 262 RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK 321
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V+++G + +VY+G+++VDMY+KCG ++ + F K++EKN+ W+++I G +HG
Sbjct: 322 RIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 381
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M + PN +TFISVL+AC+HAGL++EGR + +M + I VEHY
Sbjct: 382 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 441
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG L++A LI+ K +P+A IWGALL C++H+N+E+A ++V L L+
Sbjct: 442 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDA 501
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+NSGY LL N+YAE W +V +IR+ +K IEK PG S E++ K+Y F DKSH
Sbjct: 502 SNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEK-PPGYSSFELKGKIYLFYVGDKSH 560
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIYS L KL E+++ A YVP ++L
Sbjct: 561 PQHIEIYSYLEKLLERMQEAGYVPNTGSVL 590
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 7/228 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
+P + + T M + Y +N +L+ F M +S D+ SA A +
Sbjct: 155 IPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG 214
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL-VFFKLREKNLFCWNSIIEGL 117
+ +H + +IGF+ + + + ++D YAK GS D + F E+++ WNS+I
Sbjct: 215 VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMERDVVSWNSMIALY 274
Query: 118 AVHGFAHEALAMFDRM--IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
A +G + EA+ ++ +M + ++ N V +VL AC HAG ++ G +R + +
Sbjct: 275 AQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG-KRIHNQVVRMGLE 333
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V +VD+ SK G +E A R K + N + W A++ G +H
Sbjct: 334 ENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMH 380
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 224/332 (67%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
MP +DI +W +I+ Y Q + +EAL+ F+E++ S + PD+VT+ + LSACA LGA+DL
Sbjct: 329 MPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL 388
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH+Y+ + G ++ ++ ++L+DMY KCG L ++L+VF + K++F W+++I GLA+
Sbjct: 389 GGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAM 448
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+A+F +M + V+PN VTF ++L AC+H GLVEEGR F M Y + P V+
Sbjct: 449 HGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVK 508
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+L +AGLLE+A+ELI P A +WGALLG C +H N+ +A A ++L+ L
Sbjct: 509 HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIEL 568
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G LL N+YA+ +W V+ +R M+++G++K PG S IE++ V++F D
Sbjct: 569 EPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKE-PGCSSIEVDGIVHEFLVGDN 627
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP++ +IY+ L ++ +L+ YVP +L
Sbjct: 628 SHPSAKKIYAKLDEIVARLETIGYVPNKSHLL 659
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 127/262 (48%), Gaps = 48/262 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++SW +MIT + Q EAL+ F EM+ + P+ +TM VLSACA + G
Sbjct: 197 IPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ + + + +A++DMY KCGS++ + +F K+ EK++ W +++ G A
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316
Query: 121 GFAHEALAMFDRMIYENV--------------------------------EPNGVTFISV 148
G A +FD M +++ +P+ VT +S
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376
Query: 149 LSACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
LSAC G ++ G +++ + + C + + ++D+ K G L+ AL +
Sbjct: 377 LSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTS--------LIDMYCKCGDLQKALMVF 428
Query: 202 RSSKFQPNAVIWGALLGGCKLH 223
S + + + +W A++ G +H
Sbjct: 429 HSVE-RKDVFVWSAMIAGLAMH 449
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 9/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ +W T+I Y+ + ++L F M S PD+ T ++ A + L L
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT 154
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ H V+++ DV+I ++L+ YAKCG L VF + +++ WNS+I
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQ 214
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMT-CGYSITP 176
G EAL +F M +NV+PNG+T + VLSAC E GR ++ G S+T
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTL 274
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M+D+ +K G +EDA L + + V W +L G
Sbjct: 275 S----NAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVG 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH +++ G D + S L+ A SLD + VF ++ NL+ WN++I A
Sbjct: 52 KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111
Query: 119 VHGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTH----------AGLVEE---GRRR 164
H++L +F RM++++ + P+ TF ++ A + G+V + G
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171
Query: 165 FL------------SMTCGYSI-----TPEVEHYGCMVDLLSKAGLLEDALELIR---SS 204
F+ + GY + +V + M+ + G E+ALEL + +
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231
Query: 205 KFQPNAVIWGALLGGCKLHRNLEIA 229
+PN + +L C + E
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFG 256
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 221/330 (66%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALDLGR 61
RD++SW +MI Y+QN EA+ +++M N GI + V ++ VL ACAH GA+ G+
Sbjct: 263 RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK 322
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V+++G + +VY+G+++VDMY+KCG ++ + F K++EKN+ W+++I G +HG
Sbjct: 323 RIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 382
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M + PN +TFISVL+AC+HAGL++EGR + +M + I VEHY
Sbjct: 383 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 442
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG L++A LI+ K +P+A IWGALL C++H+N+E+A ++V L L+
Sbjct: 443 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDA 502
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+NSGY LL N+YAE W +V +IR+ +K IEK PG S E++ K+Y F DKSH
Sbjct: 503 SNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEK-PPGYSSFELKGKIYLFYVGDKSH 561
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIYS L KL E+++ A YVP ++L
Sbjct: 562 PQHIEIYSYLEKLLERMQEAGYVPNTGSVL 591
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 7/213 (3%)
Query: 16 YSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD 73
Y +N +L+ F M +S D+ SA A + + +H + +IGF+
Sbjct: 171 YVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFE 230
Query: 74 IDVYIGSALVDMYAKCGSLDRSLL-VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+ + + ++D YAK GS D + F E+++ WNS+I A +G + EA+ ++ +
Sbjct: 231 RNAGVVNTMLDSYAKGGSRDLEVARKVFDTMERDVVSWNSMIALYAQNGMSAEAIGLYSK 290
Query: 133 M--IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK 190
M + ++ N V +VL AC HAG ++ G +R + + V +VD+ SK
Sbjct: 291 MLNVGGGIKCNAVALSAVLLACAHAGAIQTG-KRIHNQVVRMGLEENVYVGTSIVDMYSK 349
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G +E A R K + N + W A++ G +H
Sbjct: 350 CGRVEMASRAFRKIK-EKNILSWSAMITGYGMH 381
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 214/321 (66%), Gaps = 1/321 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M+ CY+Q + EAL F++M+ G+ P + T+ ++LSACAHLGALD G
Sbjct: 349 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 408
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ +++ +G+ALVDMYAKCG + + VF + K++ WN+II G+A+H
Sbjct: 409 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 468
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M VEPN +TF+++LSAC+HAG+V+EG++ M+ Y I P+VEH
Sbjct: 469 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 528
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DLL++AG LE+A+ELI + +PN GALLGGC++H N E+ + L+ L+
Sbjct: 529 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 588
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA +W + K+R MK GI K PG S IE++ V++F A D S
Sbjct: 589 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK-VPGVSVIELKGMVHRFVAGDWS 647
Query: 301 HPASDEIYSSLSKLDEQLKLA 321
HP S++IY L+++ +LK A
Sbjct: 648 HPESNKIYEKLNEIHTRLKSA 668
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 42/297 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I S +K EAL ++ M SG+ PD +T V+ AC G +H +V+
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF+ D YI S+L+ +YA L + +F +++ WN++I+G H A
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 282
Query: 129 MFDRMIYENV---------------------------EPNGVTFISVLSACTHAGLVEEG 161
+FDRM+ +V E N V++ S+L+ G VE+
Sbjct: 283 VFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDA 342
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLG 218
F M C +V + M+ ++ G +AL L +R+ +P +LL
Sbjct: 343 FGLFSEMPCR-----DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 397
Query: 219 GC----KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
C L + L + H +N+ I NS T L++MYA+ + + T++ AM+
Sbjct: 398 ACAHLGALDKGLHL-HTYINDNRI--EVNSIVGTALVDMYAKCGKISLATQVFNAME 451
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 127/254 (50%), Gaps = 20/254 (7%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
ARD++SW MI Y ++ + A F+ M + D ++ T+++ A +G +D +
Sbjct: 258 ARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKR 313
Query: 63 IHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ FD ++ ++++ + KCG+++ + +F ++ +++ WNS++ A
Sbjct: 314 L--------FDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYA 365
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G +EALA+FD+M V+P T +S+LSAC H G +++G + I
Sbjct: 366 QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN-DNRIEVNS 424
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL-- 236
+VD+ +K G + A ++ + + + + + W ++ G +H N++ A E+
Sbjct: 425 IVGTALVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 483
Query: 237 MILEPNNSGYCTLL 250
+EPN+ + +L
Sbjct: 484 AGVEPNDITFVAIL 497
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/332 (44%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+++WT M+T Y+Q EA++ F M+ GI PD++T +VL++C+ L G
Sbjct: 310 LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG 369
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL-AV 119
+ IH ++ G+++DVY+ SALV MYAKCGS+D + LVF ++ E+N+ W +II G A
Sbjct: 370 KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQ 429
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL FD+M + ++P+ VTF SVLSACTH GLVEEGR+ F SM Y I P VE
Sbjct: 430 HGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 489
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C VDLL +AG LE+A +I S F P +WGALL C++H ++E A ++ L
Sbjct: 490 HYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL 549
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P++ G L ++YA R+ + K+R M++ + K PG SWIE++ KV+ F DK
Sbjct: 550 DPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKE-PGQSWIEVDGKVHVFHVEDK 608
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S++IY L KL EQ+K YVP+ +L
Sbjct: 609 SHPESEQIYVELGKLTEQIKEMGYVPDTRFVL 640
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 134/221 (60%), Gaps = 4/221 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +++++WT +I Y+Q Q AL+ M+ + ++P+++T A++L C AL+ G
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y++Q G+ ++++ ++L+ MY KCG L+ + +F L +++ W +++ G A
Sbjct: 269 KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQL 328
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF EA+ +F RM + ++P+ +TF SVL++C+ ++EG+R + GY++ +V
Sbjct: 329 GFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL--DVY 386
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+V + +K G ++DA L+ + + N V W A++ GC
Sbjct: 387 LQSALVSMYAKCGSMDDA-SLVFNQMSERNVVAWTAIITGC 426
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+I+SWT MI + + EA + MK +G PD+VT ++L+A + L LG+++
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H+ +++ G +++ +G++LV MYAKCG + ++ ++F +L EKN+ W +I G A G
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHY 181
AL + + M V PN +TF S+L CT +E G++ R++ + GY E+
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYI-IQSGYG--RELWVV 287
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + K G LE+A +L S + V W A++ G
Sbjct: 288 NSLITMYCKCGGLEEARKLF-SDLPHRDVVTWTAMVTG 324
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 6/241 (2%)
Query: 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF 72
++ + + +EAL N M G +L CA L +L+ GRE+H +++ G
Sbjct: 19 VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+ Y+ + L+ MYAKCGSL + VF +R++N+ W ++IE EA ++
Sbjct: 79 QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138
Query: 133 MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKA 191
M +P+ VTF+S+L+A T+ L++ G++ + + G + P V +V + +K
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKC 196
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTL 249
G + A +I + N V W L+ G +++A + + E PN + ++
Sbjct: 197 GDISKA-RVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASI 255
Query: 250 L 250
L
Sbjct: 256 L 256
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 215/321 (66%), Gaps = 1/321 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M+ CY+Q + EAL F++M+ G+ P + T+ ++LSACAHLGALD G
Sbjct: 154 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 213
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ +++ +G+ALVDMYAKCG + + VF + K++ WN+II G+A+H
Sbjct: 214 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 273
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M +VEPN +TF+++LSAC+HAG+V+EG++ M+ Y I P+VEH
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 333
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL++AGLLE+A+ELI + +PN GALLGGC++H N E+ + L+ L+
Sbjct: 334 YDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 393
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA +W + K+R MK GI K PG S IE++ V++F A D S
Sbjct: 394 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK-VPGVSVIELKGMVHRFVAGDWS 452
Query: 301 HPASDEIYSSLSKLDEQLKLA 321
HP S++IY L+++ +LK A
Sbjct: 453 HPESNKIYDKLNEIHTRLKSA 473
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 124/253 (49%), Gaps = 20/253 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW MI Y + + F+ M + D ++ T+++ A +G +D + +
Sbjct: 64 RDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRL 119
Query: 64 HLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
FD ++ ++++ + KCG+++ + +F ++ +++ WNS++ A
Sbjct: 120 --------FDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQ 171
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G +EALA+FD+M V+P T +S+LSAC H G +++G + I
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG-LHLHTYINDNRIEVNSI 230
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--M 237
+VD+ +K G + A ++ + + + + + W ++ G +H +++ A E+
Sbjct: 231 VGTALVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGHVKEAQQLFKEMKEA 289
Query: 238 ILEPNNSGYCTLL 250
+EPN+ + +L
Sbjct: 290 SVEPNDITFVAML 302
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 42/264 (15%)
Query: 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK 101
+T V+ AC G +H +V++ GF+ D YI ++L+ +YA L + +F
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV----------------------- 138
++++ WN++I+G G +FDRM+ +V
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120
Query: 139 ----EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
E N V++ S+LS G VEE F M C +V + M+ ++ G
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPC-----RDVVSWNSMLACYAQCGKP 175
Query: 195 EDALEL---IRSSKFQPNAVIWGALLGGC----KLHRNLEIAHIAVNELMILEPNNSGYC 247
+AL L +R+ +P +LL C L + L + H +N+ I NS
Sbjct: 176 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL-HTYINDNRI--EVNSIVG 232
Query: 248 TLLLNMYAEVSRWAEVTKIRVAMK 271
T L++MYA+ + + T++ AM+
Sbjct: 233 TALVDMYAKCGKISLATQVFNAME 256
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 219/331 (66%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISW++M+ Y +++EAL+ F +M+ P + +++VL+AC+++GA+D G
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ + +D +G+AL+DMYAKCG LD VF +++E+ +F WN++I GLA+H
Sbjct: 314 RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIH 373
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL +F ++ ++PNG+T + VL+AC HAG V++G R F +M Y + PE+EH
Sbjct: 374 GRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEH 433
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL ++GL +A +LI S +PNA +WGALLG C++H N ++A L+ LE
Sbjct: 434 YGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELE 493
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA+V R+ +V+KIR MK+ GI K PG S +++ V++F D S
Sbjct: 494 PQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI-KTVPGVSIVDLNGTVHEFKMGDGS 552
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY L + E+L++A + P+ +L
Sbjct: 553 HPQMKEIYRKLKIIKERLQMAGHSPDTSQVL 583
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 35/286 (12%)
Query: 1 MPARDIISWTTMIT-CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ W +I C NK F+ A+ + M P++ T T+ AC+ A+
Sbjct: 93 IPNPNVFIWNIVIKGCLENNKLFK-AIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQE 150
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH +V++ G DV+I SA + MYA G L+ + +F+ E ++ CWN++I+G
Sbjct: 151 GRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLK 209
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A +F +M +N+ V +++ G + + R+ F M+ I+
Sbjct: 210 CGVLEAAKGLFAQMPVKNIGSWNV----MINGLAKGGNLGDARKLFDEMSERDEIS---- 261
Query: 180 HYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCK----------LHRNL 226
+ MVD AG ++ALE+ ++ + +P I ++L C +H L
Sbjct: 262 -WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320
Query: 227 EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
+ I ++ ++ T LL+MYA+ R ++ MKE
Sbjct: 321 KRNSIKLDAVL---------GTALLDMYAKCGRLDMGWEVFEEMKE 357
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAK--CGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++H V++ G D Y+ AL+ YA + D +L VF + N+F WN +I+G
Sbjct: 51 QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ +A+ + RM+ + PN T+ ++ AC+ A V+EG R+ + I +V
Sbjct: 111 NNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEG-RQIHGHVVKHGIGSDVH 168
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+ + + G LEDA ++ S + + V W ++ G LE A ++ +
Sbjct: 169 IKSAGIHMYASFGRLEDARKMFYSG--ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPV- 225
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
N G +++N A+ + K+ M E
Sbjct: 226 --KNIGSWNVMINGLAKGGNLGDARKLFDEMSE 256
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 218/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI+++ MI Y+ + +EAL F+ ++ G+ PD+VT +L+ACA+ G+L+
Sbjct: 490 MIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 549
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH V + GF D +G+ALV YAKCGS + +VF K+ ++N+ WN+II G A H
Sbjct: 550 REIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQH 609
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F+RM E V+P+ VTF+S+LSAC+HAGL+EEGRR F SM+ ++I P +EH
Sbjct: 610 GRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEH 669
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A LI++ FQ N IWGALLG C++H N+ +A A + L+
Sbjct: 670 YGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLD 729
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+N+ L +MYA W K+R M++ G+ K PG SWI++ K++ F A D+S
Sbjct: 730 LDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE-PGRSWIQVGDKLHYFVAEDRS 788
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY+ L +L +K+ YVP+ +++
Sbjct: 789 HPQSEKIYAELDRLTHAMKMKGYVPDTRSVM 819
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 129/221 (58%), Gaps = 4/221 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+I+W TMI ++ + EA + +N+M+ G+ P+++T +L+AC + AL G+EI
Sbjct: 291 RDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEI 350
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V + GF D+ + +AL+ MY++CGS+ + LVF K+ K++ W ++I GLA GF
Sbjct: 351 HSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFG 410
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYG 182
EAL ++ M VEPN VT+ S+L+AC+ +E GRR + G + V +
Sbjct: 411 AEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN-- 468
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V++ S G ++DA ++ Q + V + A++GG H
Sbjct: 469 TLVNMYSMCGSVKDARQVF-DRMIQRDIVAYNAMIGGYAAH 508
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 131/224 (58%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWT MI +++ EAL + EM+ +G+ P++VT ++L+AC+ AL+ G
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG 448
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V++ G D ++G+ LV+MY+ CGS+ + VF ++ ++++ +N++I G A H
Sbjct: 449 RRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAH 508
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
EAL +FDR+ E ++P+ VT+I++L+AC ++G +E R L G+ V
Sbjct: 509 NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVG 568
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V +K G DA ++ + N + W A++GG H
Sbjct: 569 N--ALVSTYAKCGSFSDA-SIVFEKMTKRNVISWNAIIGGSAQH 609
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 132/252 (52%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SWT I Y+ + A + F +M+ G+ P+++T +VL+A + AL G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ G + D +G+ALV MYAKCGS VF KL ++L WN++I GLA
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA ++++M E V PN +T++ +L+AC ++ + G + S T ++
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWG-KEIHSRVAKAGFTSDIGV 365
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++ + S+ G ++DA L+ + + + W A++GG A E+
Sbjct: 366 QNALISMYSRCGSIKDA-RLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424
Query: 239 LEPNNSGYCTLL 250
+EPN Y ++L
Sbjct: 425 VEPNRVTYTSIL 436
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 10/252 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R + SW M+ Y Q +AL +M+ G++PD+ T+ + LS+C GAL+ GREI
Sbjct: 89 RTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREI 148
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H MQ G DV + + +++MYAKCGS++ + VF K+ +K++ W I G A G +
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRS 208
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITPEVEH 180
A +F +M E V PN +T+ISVL+A + ++ G+ R L+ G+ V
Sbjct: 209 ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILN--AGHESDTAVG- 265
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V + +K G +D ++ + + W ++GG E A N++
Sbjct: 266 -TALVKMYAKCGSYKDCRQVF-EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG 323
Query: 239 LEPNNSGYCTLL 250
+ PN Y LL
Sbjct: 324 VMPNKITYVILL 335
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 105/199 (52%), Gaps = 8/199 (4%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
A+D ++ G + +L C + L GR++H +++Q D Y +AL++
Sbjct: 7 AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66
Query: 85 MYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
MY +CGS++ + V+ KL E+ + WN+++ G +G+ +AL + +M + P+
Sbjct: 67 MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126
Query: 143 VTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
T +S LS+C G +E GR F +M G + +V+ C++++ +K G +E+A E+
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAG--LLFDVKVANCILNMYAKCGSIEEAREVF 184
Query: 202 RSSKFQPNAVI-WGALLGG 219
K + +V+ W +GG
Sbjct: 185 --DKMEKKSVVSWTITIGG 201
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 212/326 (65%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+I+SW +IT Y+ N+ FR+ +D F EM+ +G P +VTM VL ACAHLGAL+ G
Sbjct: 203 IPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ ++V++G+AL+DMYAKCG +D + +F +R KN++ WN +I G A++
Sbjct: 263 RWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMN 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL F RMI E +P+ VTF+ VL AC H GLV EGR F SM + + P +EH
Sbjct: 323 GRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEH 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A +LI++ QP+ +IW LLG C++H N+++ A+ +L+ LE
Sbjct: 383 YGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELE 442
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN LL N+YA RW +V ++R M + K PG S IE++ VY+F S+
Sbjct: 443 PNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRK-VPGCSSIEIDNVVYEFVVSNYI 501
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
P +E+Y L+ ++++LKLA YV +
Sbjct: 502 KPGFEEVYKLLADMNKKLKLAGYVAD 527
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 21/250 (8%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+MI CY+ + + ++ + +M +GI PD T TVL + A L +LG+ IH ++Q
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+GF+ +VY+ +ALV+MY C S+ + VF ++ ++N+ WN++I G + + + +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---------RRFLSMTCGYSITPEVEH 180
F M +P VT + VL AC H G + +GR R L++ G +
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTA------- 283
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ +K G++++A ++ ++ + + N W L+ G ++ E A A + MI+E
Sbjct: 284 ---LIDMYAKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSR-MIME 338
Query: 241 PNNSGYCTLL 250
T L
Sbjct: 339 KFKPDEVTFL 348
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 215/331 (64%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T+I + Q+ + + A D F M+ SG+ PDQ+T +L+ACA AL G
Sbjct: 569 MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG 628
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + + D DV +G+ L+ MY KCGS+D + LVF L +KN++ W S+I G A H
Sbjct: 629 RRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQH 688
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M E V+P+ +TF+ LSAC HAGL++EG F SM ++I P +EH
Sbjct: 689 GRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK-DFNIEPRMEH 747
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AGLL +A+E I + +P++ +WGALLG C++H ++E+A + + L+
Sbjct: 748 YGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELD 807
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN+ G +L N+YA W EVTK+R M + G+ K+ PG SWIE++ +V+ F + DK+
Sbjct: 808 PNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKK-PGQSWIEVDGRVHIFCSDDKT 866
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI++ L +L ++K YVP+ +L
Sbjct: 867 HPQIEEIHAELGRLHMEMKKLGYVPDTRYVL 897
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 157/279 (56%), Gaps = 12/279 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+I+WT+MIT ++++QF++A + F M+ G+ PD+V ++L AC H AL+ G
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + ++G D ++Y+G+AL+ MY KCGS++ +L VF ++ +N+ W ++I G A H
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G EA F++MI +EPN VTF+S+L AC+ +++GR+ + GY V
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ + +K G L DA + Q N V W A++ H + A L+
Sbjct: 446 --TALLSMYAKCGSLMDARNVFERISKQ-NVVAWNAMITAYVQHEKYDNAVATFQALLKE 502
Query: 239 -LEPNNSGYCTLLLNMYA-----EVSRWAEVTKIRVAMK 271
++P++S + T +LN+ E+ +W + IR +
Sbjct: 503 GIKPDSSTF-TSILNVCKSPDALELGKWVQSLIIRAGFE 540
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 142/252 (56%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ SW ++ Y Q++++ EA +M G+ PD+ T +L+ACA +D G
Sbjct: 165 MPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKG 224
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ ++ G+D D+++G+AL++M+ KCG +D +L VF L ++L W S+I GLA H
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARH 284
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A +F M E V+P+ V F+S+L AC H +E+G+R M + E+
Sbjct: 285 RQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLDTEIYV 343
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++ + +K G +EDALE+ K + N V W A++ G H +E A + N+++
Sbjct: 344 GTALLSMYTKCGSMEDALEVFNLVKGR-NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402
Query: 239 LEPNNSGYCTLL 250
+EPN + ++L
Sbjct: 403 IEPNRVTFMSIL 414
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 119/220 (54%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W MIT Y Q++++ A+ F + GI PD T ++L+ C AL+LG+ +
Sbjct: 471 QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWV 530
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+++ GF+ D++I +ALV M+ CG L ++ +F + E++L WN+II G HG
Sbjct: 531 QSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGEN 590
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A F M V+P+ +TF +L+AC + EG RR ++ ++ +V
Sbjct: 591 QFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG-RRLHALITEAALDCDVVVGTG 649
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + +K G ++DA L+ + + N W +++ G H
Sbjct: 650 LISMYTKCGSIDDA-HLVFHNLPKKNVYSWTSMITGYAQH 688
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 130/263 (49%), Gaps = 7/263 (2%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
S+ Q EA+ + + I + T +++L C L G IH ++ D+
Sbjct: 80 SKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDI 139
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + L+ MYAKCG+ + + +F ++ +K+++ WN ++ G H EA + ++M+ +
Sbjct: 140 FMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQD 199
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
V+P+ TF+ +L+AC A V++G F L + G+ V ++++ K G ++
Sbjct: 200 GVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG--TALINMHIKCGGVD 257
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA--HIAVNELMILEPNNSGYCTLLLNM 253
DAL++ + + + + W +++ G HR + A V E ++P+ + + LL
Sbjct: 258 DALKVFNNLP-RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS-LLKA 315
Query: 254 YAEVSRWAEVTKIRVAMKELGIE 276
+ ++ MKE+G++
Sbjct: 316 CNHPEALEQGKRVHARMKEVGLD 338
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 218/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISW++M+ Y +++EAL+ F +M+ P + +++VL+AC+++GA+D G
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQG 313
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ + +D +G+AL+DMYAKCG LD VF +++E+ +F WN++I GLA+H
Sbjct: 314 RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIH 373
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL +F ++ ++PNG+T + VL+AC HAG V++G R F +M Y + PE+EH
Sbjct: 374 GRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEH 433
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL ++GL +A +LI S +PNA +WGALLG C++H N ++A L+ LE
Sbjct: 434 YGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELE 493
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA+V R+ +V+KIR MK GI K PG S +++ V++F D S
Sbjct: 494 PQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI-KTVPGVSIVDLNGTVHEFKMGDGS 552
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY L + E+L++A + P+ +L
Sbjct: 553 HPQMKEIYRKLKIIKERLQMAGHSPDTSQVL 583
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 35/286 (12%)
Query: 1 MPARDIISWTTMIT-CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ W +I C NK F+ A+ + M P++ T T+ AC+ A+
Sbjct: 93 IPNPNVFIWNIVIKGCLENNKLFK-AIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQE 150
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH +V++ G DV+I SA + MYA G L+ + +F+ E ++ CWN++I+G
Sbjct: 151 GRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLK 209
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A +F +M +N+ V +++ G + + R+ F M+ I+
Sbjct: 210 CGVLEAAKGLFAQMPVKNIGSWNV----MINGLAKGGNLGDARKLFDEMSERDEIS---- 261
Query: 180 HYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCK----------LHRNL 226
+ MVD AG ++ALE+ ++ + +P I ++L C +H L
Sbjct: 262 -WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320
Query: 227 EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
+ I ++ ++ T LL+MYA+ R ++ MKE
Sbjct: 321 KRNSIKLDAVL---------GTALLDMYAKCGRLDMGWEVFEEMKE 357
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAK--CGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++H V++ G D Y+ AL+ YA + D +L VF + N+F WN +I+G
Sbjct: 51 QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ +A+ + RM+ + PN T+ ++ AC+ A V+EG R+ + I +V
Sbjct: 111 NNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEG-RQIHGHVVKHGIGSDVH 168
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+ + + G LEDA ++ S + + V W ++ G LE A ++ +
Sbjct: 169 IKSAGIQMYASFGRLEDARKMFYSG--ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPV- 225
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
N G +++N A+ + K+ M E
Sbjct: 226 --KNIGSWNVMINGLAKGGNLGDARKLFDEMSE 256
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++ SW +I Y+ N F E L F M G + P+ T+ TVLSACA LGALDL
Sbjct: 277 MPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 336
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y IGF +Y+G+AL+DMY+KCG ++ ++ VF + K+L WNS+I GLA
Sbjct: 337 GKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLAT 396
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M +P+G+TFI VL +CTH GLVEEG F SM YSI P++E
Sbjct: 397 HGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIE 456
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL +AGLL+ A+E ++ + +AVIW ALLG C++++N+++A +A+ +L++L
Sbjct: 457 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVL 516
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N LL N+Y ++ RW +V ++++ M++ G K+ PG S IE+ V +F + D+
Sbjct: 517 EPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTG-SKKLPGCSLIEVNDSVVEFYSLDE 575
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S EIY L L + L+ Y P + +L
Sbjct: 576 RHSQSKEIYGVLKGLMKLLRSFGYGPNMMELL 607
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 25/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M R+I++WT+MI+ Y + A F+ ++P D V ++S +G +
Sbjct: 184 MLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMVSGYIEIGDMK 237
Query: 59 LGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R++ FD D + +++ YA G ++ +F ++ E+N+F WN +I
Sbjct: 238 AARKL--------FDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLI 289
Query: 115 EGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGY 172
G A +G E L F RM+ + V PN T ++VLSAC G ++ G+ + T G+
Sbjct: 290 GGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF 349
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ V + ++D+ SK GL+E+A+E+ S + + + W +++ G H
Sbjct: 350 KGSIYVGN--ALIDMYSKCGLIENAMEVFESMDLK-DLITWNSMICGLATH 397
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P + W + Y N +RE + F +MK+ + P+ T VL +CA +GA G
Sbjct: 83 FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 142
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH V++ G + + ++ + L+D+Y+ ++ + +F + E+N+ W S+I G +
Sbjct: 143 EEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILC 202
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A +FD +V V + ++S G ++ R+ F +M +
Sbjct: 203 NRVALARRLFDLAPERDV----VLWNIMVSGYIEIGDMKAARKLFDTMP-----YRDTMS 253
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M++ + G +E A E + + N W L+GG
Sbjct: 254 WNTMLNGYANNGDVE-ACEQLFEEMPERNVFSWNGLIGG 291
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
++L +C + L +++ ++ GF + Y+ +V + + + +F +
Sbjct: 30 SLLRSCKTVALL---QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDP 86
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ WN+I G + F E + +F +M +V PN TF VL +C G EG
Sbjct: 87 KVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 142
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 219/315 (69%), Gaps = 1/315 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RDI+SWT MIT Q+ +++L+ F+ M+ GISPD + + +VLSACA LG LD G
Sbjct: 263 LPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ Q G D++IG+A+VDMYAKCG ++ +L +F+ + ++N F WN+++ GLA+H
Sbjct: 323 TWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMH 382
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G HEAL +F+ MI V+PN +TF+++L+AC H GLV+EGR+ F +M+ Y++ P++EH
Sbjct: 383 GLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEH 442
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DL +AGLLE+A+EL R+ +P+ +IWG LL C N+E++H + ++ L+
Sbjct: 443 YGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELD 502
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++SG LL N+ A RW+ VT++R MK+ G+ K PGSS IE++ K ++F D S
Sbjct: 503 HDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRK-APGSSVIEVDGKAHEFVVGDIS 561
Query: 301 HPASDEIYSSLSKLD 315
H ++EIY L+ ++
Sbjct: 562 HLQTEEIYKVLNLIN 576
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 18/257 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I+ + + F EA+ F M + P T+ +VL+ACA G L G
Sbjct: 166 MLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTG 222
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH V++ F +++ +G+A++DMY K G + +F +L +++ W +I GL
Sbjct: 223 KGIH-GVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQS 281
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
++L +F M + P+ + SVLSAC G ++ G +++ I ++
Sbjct: 282 DHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQR---GIKWDI 338
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN--EL 236
+VD+ +K G +E AL++ S Q N W ALL G +H + H A+N E+
Sbjct: 339 HIGTAIVDMYAKCGCIEMALKIFYSMS-QRNTFTWNALLCGLAMH---GLVHEALNLFEV 394
Query: 237 MIL---EPNNSGYCTLL 250
MI+ +PN + +L
Sbjct: 395 MIISGVKPNEITFLAIL 411
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 40/299 (13%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I Y + + A+ + M G PD T +L AC++ GR++H V+
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G D Y+ ++L+ Y CG + VF ++ +++ WNS+I G G EA++
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRF-LSMTCGYSITPEVEH 180
+F RM +VEP+ T +SVL+AC G + G+ RRF +++ G ++
Sbjct: 193 VFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVK 249
Query: 181 YGC---------------------MVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGAL 216
GC M+ L ++ + +LEL +R+ P+A+I ++
Sbjct: 250 NGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSV 309
Query: 217 LGGCKLHRNLEIA---HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
L C L+ H +N+ I + G T +++MYA+ KI +M +
Sbjct: 310 LSACASLGTLDFGTWVHEYINQRGIKWDIHIG--TAIVDMYAKCGCIEMALKIFYSMSQ 366
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL--FCWNSII 114
L + R+IH ++ G D ++ S +++ +A + + L F +NS+I
Sbjct: 18 LRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNSLI 77
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
G F A++++ RM+ + P+ TF +L AC++ EGR+
Sbjct: 78 NGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQ 126
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++ SW +I Y+ N F E L F M G + P+ T+ TVLSACA LGALDL
Sbjct: 319 MPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 378
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y IGF +Y+G+AL+DMY+KCG ++ ++ VF + K+L WNS+I GLA
Sbjct: 379 GKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLAT 438
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M +P+G+TFI VL +CTH GLVEEG F SM YSI P++E
Sbjct: 439 HGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIE 498
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL +AGLL+ A+E ++ + +AVIW ALLG C++++N+++A +A+ +L++L
Sbjct: 499 HYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVL 558
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N LL N+Y ++ RW +V ++++ M++ G K+ PG S IE+ V +F + D+
Sbjct: 559 EPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTG-SKKLPGCSLIEVNDSVVEFYSLDE 617
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S EIY L L + L+ Y P + +L
Sbjct: 618 RHSQSKEIYGVLKGLMKLLRSFGYEPNMMELL 649
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 25/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M R+I++WT+MI+ Y + A F+ ++P D V ++S +G +
Sbjct: 226 MLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMVSGYIEIGDMK 279
Query: 59 LGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R++ FD D + +++ YA G ++ +F ++ E+N+F WN +I
Sbjct: 280 AARKL--------FDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLI 331
Query: 115 EGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGY 172
G A +G E L F RM+ + V PN T ++VLSAC G ++ G+ + T G+
Sbjct: 332 GGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF 391
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ V + ++D+ SK GL+E+A+E+ S + + + W +++ G H
Sbjct: 392 KGSIYVGN--ALIDMYSKCGLIENAMEVFESMDLK-DLITWNSMICGLATH 439
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 10/219 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P + W + Y N +RE + F +MK+ + P+ T VL +CA +GA G
Sbjct: 125 FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 184
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH V++ G + + ++ + L+D+Y+ ++ + +F + E+N+ W S+I G +
Sbjct: 185 EEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILC 244
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A +FD +V V + ++S G ++ R+ F +M +++
Sbjct: 245 NRVALARRLFDLAPERDV----VLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMS----- 295
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M++ + G +E A E + + N W L+GG
Sbjct: 296 WNTMLNGYANNGDVE-ACEQLFEEMPERNVFSWNGLIGG 333
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
++L +C + L +++ ++ GF + Y+ +V + + + +F +
Sbjct: 72 SLLRSCKTVALL---QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDP 128
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ WN+I G + F E + +F +M +V PN TF VL +C G EG
Sbjct: 129 KVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 184
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 208/323 (64%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW +I Y Q +++EAL F EM GI P+Q T+ + L+ACA LG+LD G
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H YV + ++ +G+ALVDMY+KCG +D +LLVF KL K+++ W ++I GLA+
Sbjct: 326 RWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMR 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +L +F +MI V+PNGVTF+ VLSAC H GLV+EG F M C Y + P V+H
Sbjct: 386 GDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG LE+A++ I S +P +WGAL GC +H+ E+ N L+ L+
Sbjct: 446 YGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQ 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL N+Y+ +W +R MK G++K PG SWIE+ +++F A DKS
Sbjct: 506 PHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKS-PGCSWIEVNGVIHEFIAFDKS 564
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
H S +Y L + QLKLA+Y
Sbjct: 565 HTESINVYMMLESVSAQLKLATY 587
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 46/308 (14%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT +I +N + EAL+ F EM++SG+ D+VT+ +VL A A L + GR +
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWV 226
Query: 64 HLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H + ++ G I DVY+GSALVDMY+KCG D ++ VF ++ +NL W ++I G
Sbjct: 227 HGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNR 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F MI E +EPN T S L+AC G +++G R+L S G
Sbjct: 287 YKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG--RWLHEYVDRSKLGLNSKLG 344
Query: 183 -CMVDLLSKAGLLEDAL-----------------------------------ELIRSSKF 206
+VD+ SK G +++AL ++IR S+
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIR-SRV 403
Query: 207 QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI----LEPNNSGYCTLLLNMYAEVSRWAE 262
QPN V + +L C H L + + LMI LEPN Y ++++ R E
Sbjct: 404 QPNGVTFLGVLSACA-HGGLVDEGLELFRLMICDYRLEPNVDHY-GCMVDLLGRAGRLEE 461
Query: 263 VTKIRVAM 270
K +M
Sbjct: 462 AIKFIESM 469
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 26/252 (10%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W T+I +S + Q + L A++ ++N G+ PD+ T +L A + L + + +
Sbjct: 69 IFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYA 127
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++++ G D D ++ ++LV +A CG +D S +F + +K++ W ++I G +G A E
Sbjct: 128 HIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVE 187
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSAC-----------THAGLVEEGRRRFLSMTCGYSI 174
AL F M VE + VT +SVL A H VE GR +
Sbjct: 188 ALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGR-----------V 236
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
+V +VD+ SK G +DA+++ + N V WGAL+ G + A
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR-NLVSWGALIAGYVQCNRYKEALKVFQ 295
Query: 235 ELMI--LEPNNS 244
E++I +EPN S
Sbjct: 296 EMIIEGIEPNQS 307
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 6/183 (3%)
Query: 39 PDQVTMATVLSACAH-LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
P T+ + C H G D ++ ++ G + S ++ K L +LL
Sbjct: 2 PKLATLRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATK--DLGYTLL 59
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F +L +F WN+II G + L + R+ V P+ TF +L A + L
Sbjct: 60 LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA--FSKL 117
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
E +F + + + + +V + G ++ + L + + + V W AL+
Sbjct: 118 RNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA-KKDVVSWTALI 176
Query: 218 GGC 220
GC
Sbjct: 177 NGC 179
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 218/328 (66%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ WT M++ Y+Q +A + F++M+ SG+ P +VT+ ++LS CA GALDLG+ +
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + ++D + +ALVDMYAKCG ++ + +F + +++ WN+II G A+HG+
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 441
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M + V+PN +TFI +L AC+HAGLV EG++ F M + + P++EHYGC
Sbjct: 442 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 501
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AGLL++A E+I+S +PN ++WGAL+ C+LH+N ++ +A +L+ +EP N
Sbjct: 502 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN 561
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY L+ N+YA +RW++ +R MK +G++K PG S IE+ V++F D+SHP
Sbjct: 562 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKE-PGHSVIEVNGTVHEFLMGDQSHPQ 620
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
I L+++ +L A YVP+ +L
Sbjct: 621 IRRINEMLAEMRRKLNEAGYVPDTSTVL 648
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
W +IT Y++ Q R AL+ + +++ D +VL AC + LG+EIH +V
Sbjct: 91 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ G D DV++G+AL+ MY +C ++ + LVF K+ E+++ W+++I L+ + AL
Sbjct: 151 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----- 182
+ M + V P+ V +S+++ + G+ +M EH G
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGK----AMHAYVIRNSNNEHMGVPTTT 266
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++D+ +K G L A +L + Q V W A++ GC LE A
Sbjct: 267 ALLDMYAKCGHLGLARQLF-NGLTQKTVVSWTAMIAGCIRSNRLEEA 312
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 49/263 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW+TMI S+NK+F AL+ EM + P +V M ++++ A + +G
Sbjct: 185 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 244
Query: 61 REIHLYVMQIGFD--IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG-- 116
+ +H YV++ + + V +AL+DMYAKCG L + +F L +K + W ++I G
Sbjct: 245 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 304
Query: 117 --------------------------LAVHGFAH---EALAMFDRMIYENVEPNGVTFIS 147
L+ + A+ +A +FD+M V P VT +S
Sbjct: 305 RSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVS 364
Query: 148 VLSACTHAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
+LS C AG ++ G+ + + + C + +VD+ +K G + A L
Sbjct: 365 LLSLCAVAGALDLGKWVHSYIDKERVEVDCILNT--------ALVDMYAKCGDINAAGRL 416
Query: 201 IRSSKFQPNAVIWGALLGGCKLH 223
+ + +W A++ G +H
Sbjct: 417 FIEA-ISRDICMWNAIITGFAMH 438
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+RDI W +IT ++ + EALD F EM+ G+ P+ +T +L AC+H G + G++
Sbjct: 422 SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKK 481
Query: 63 I-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAVH 120
+ V G + +VD+ + G LD + + + K N W +++ +H
Sbjct: 482 LFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 541
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW MI+ Y+QN F EA++ F EM++S I P+ VT+ +VL A A +GAL+LG
Sbjct: 230 MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IHLY + +ID +GSALVDMY+KCGS+D++L VF L ++N W++II A+H
Sbjct: 290 KWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMH 349
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ F M V PN V +I +LSAC+HAGLVEEGR F M + P +EH
Sbjct: 350 GRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEH 409
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG LE+A ELIR+ +P+ VIW ALLG CK+H+NL++ LM L
Sbjct: 410 YGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELA 469
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG L N+YA + W V ++R+ MK + I K PG SWIE+ +++F D S
Sbjct: 470 PHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD-PGCSWIEIHGIIHEFLVEDDS 528
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE-LEAML 331
H + EI + L ++ +L+ Y P LE L
Sbjct: 529 HSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFL 560
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 131/304 (43%), Gaps = 57/304 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFR---EALDAFNEMKNSG-ISPDQVTMATVLSACAHLGA 56
MP + W T++ ++ EAL F+ M G + P++ T +VL ACA
Sbjct: 78 MPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--------------- 101
L G++IH +++ GF D ++ S LV MY C ++ + +F K
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197
Query: 102 -----------------------LREKNLF---------CWNSIIEGLAVHGFAHEALAM 129
KNLF WN +I G A +G EA+ +
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINL 257
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLL 188
F M N++PN VT +SVL A G +E G +++ + G + + G +VD+
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELG--KWIHLYAGKNKVEIDDVLGSALVDMY 315
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGY 246
SK G ++ AL++ + + NA+ W A++G +H E I H + + PN+ Y
Sbjct: 316 SKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAY 374
Query: 247 CTLL 250
+L
Sbjct: 375 IGIL 378
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 128/306 (41%), Gaps = 40/306 (13%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H ++ G D + ++ A +D + VF ++ E N FCWN+I+ LA
Sbjct: 36 KQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAE 95
Query: 120 HGFAH---EALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
H EAL +F M+ + V+PN TF SVL AC A + EG ++ + +
Sbjct: 96 TNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREG-KQIHGLIVKFGFH 154
Query: 176 PEVEHYGCMVDLLSKAGLLEDALEL---------------IRSSKFQPNAVIWGALLGGC 220
+ +V + ++EDA L + K N V+W ++ G
Sbjct: 155 EDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQ 214
Query: 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR-- 278
+++ A +E + P + ++++ YA+ + E + M+ I+
Sbjct: 215 VRLGDIKSAKNLFDE---MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYV 271
Query: 279 -----CPGSSWI---EMERKVYQFAASDKSH------PASDEIYSSLSKLDEQLKLASYV 324
P + I E+ + ++ +A +K A ++YS +D+ L++ +
Sbjct: 272 TLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETL 331
Query: 325 PELEAM 330
P+ A+
Sbjct: 332 PKRNAI 337
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/331 (45%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W MI Y+Q + REALD F+ M+ G+ ++V+M VLSAC HL LD G
Sbjct: 204 MPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHG 263
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H YV + + V +G+ALVDMYAKCG++DR++ VF+ ++E+N++ W+S I GLA++
Sbjct: 264 RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMN 323
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF E+L +F+ M E V+PNG+TFISVL C+ GLVEEGR+ F SM Y I P++EH
Sbjct: 324 GFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEH 383
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVD+ +AG L++AL I S +P+ W ALL C++++N E+ IA +++ LE
Sbjct: 384 YGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELE 443
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G LL N+YA+ W V+ +R MK G+ K+ PG S IE++ +V++F DKS
Sbjct: 444 DKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGV-KKLPGCSVIEVDGEVHEFIVGDKS 502
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP DEI L ++ + L+L+ YV +L
Sbjct: 503 HPRYDEIEMKLEEISKCLRLSGYVANTNPVL 533
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEM---KNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ + +MI YS++ ++ + + N+ +SPD T ++ CA L A G
Sbjct: 74 LFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLC 133
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGS 91
+H V++ GF++D ++ + LV MYA KCG
Sbjct: 134 VHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGD 193
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+D + +F ++ E++ WN++I G A G + EAL +F M E V+ N V+ + VLSA
Sbjct: 194 IDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSA 253
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
CTH +++ GR + Y + V +VD+ +K G ++ A+++ K + N
Sbjct: 254 CTHLQVLDHGRWVHAYVE-RYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK-ERNVY 311
Query: 212 IWGALLGG 219
W + +GG
Sbjct: 312 TWSSAIGG 319
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/323 (45%), Positives = 211/323 (65%), Gaps = 10/323 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-------NSGISPDQVTMATVLSACAH 53
MP RD+ SW +I Y+QN F EAL F M G P+QVT LSAC H
Sbjct: 248 MPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGH 307
Query: 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
G L LG+ IH YV + G +D ++ +ALVDMY KCG L + VF + E++L WNS+
Sbjct: 308 TGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSM 367
Query: 114 IEGLAVHGFAHEALAMFDRMIY--ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
I LA+HG + A+++F+ M+ V+P+ VTFI +L+ACTH GLVE+G F MT
Sbjct: 368 INCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQN 427
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
Y I P++EHYGC+VDLL +AG E+A+E++R + +P+ VIWG+LL GCK+H + ++A
Sbjct: 428 YGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEF 487
Query: 232 AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKV 291
++ +L+ ++PNN GY +L N+Y E+ +W EV K+R +KE K PG SWIE++ +V
Sbjct: 488 SIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHK-TPGCSWIEIDNQV 546
Query: 292 YQFAASDKSHPASDEIYSSLSKL 314
+QF + DK+HP ++EIY++L L
Sbjct: 547 HQFYSVDKTHPRTEEIYNTLESL 569
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 60/297 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ +T MIT Y+ + AL + M + P+ VL +C + R +
Sbjct: 118 NVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMV 177
Query: 64 HLYVMQIGFD---------IDVYIG-----------------------SALVDMYAKCGS 91
H V++ GF+ +D Y+ +A++ Y + G
Sbjct: 178 HCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQ 237
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-------ENVEPNGVT 144
+ ++L+F ++ E+++ WN++I G +G EAL++F RMI + PN VT
Sbjct: 238 IGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVT 297
Query: 145 FISVLSACTHAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
+ LSAC H G++ G+ R L + S +VD+ K G L++A
Sbjct: 298 AVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVS--------NALVDMYGKCGCLKEA 349
Query: 198 LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI----LEPNNSGYCTLL 250
+ + + + W +++ LH + A E+M ++P+ + LL
Sbjct: 350 RRVFDRT-LERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLL 405
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 227/332 (68%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M RD+ISW ++I Y+QN E+++ F+ M K+ I+ + VT++ VL ACAH G+ L
Sbjct: 322 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 381
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH V+++G + +V++G++++DMY KCG ++ + F ++REKN+ W++++ G +
Sbjct: 382 GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGM 441
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A EAL +F M V+PN +TF+SVL+AC+HAGL+EEG F +M+ + + P VE
Sbjct: 442 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 501
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG L++A +LI+ K +P+ V+WGALLG C++H+N+++ I+ +L L
Sbjct: 502 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 561
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P N GY LL N+YA+ RW +V ++R+ MK G+ K PG S ++++ +V+ F D+
Sbjct: 562 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKP-PGFSLVDIKGRVHVFLVGDR 620
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY L KL +L+ YVP++ ++L
Sbjct: 621 EHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVL 652
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 31/267 (11%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNE--MKNSG------ISPDQVTMATVLSACAHLG 55
R+I+SWT+MIT Y QN AL F E ++ SG + D + M +VLSAC+ +
Sbjct: 216 RNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVS 275
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
+ +H ++++ GF+ D+ + + L+D YAKCG L S VF + E+++ WNSII
Sbjct: 276 EKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIA 335
Query: 116 GLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
A +G + E++ +F RM+ + + N VT +VL AC H+G S G I
Sbjct: 336 VYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG----------SQRLGKCI 385
Query: 175 TPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
+V G ++D+ K G +E A + + + N W A++ G +H +
Sbjct: 386 HDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGH 444
Query: 226 LEIAHIAVNELMI--LEPNNSGYCTLL 250
+ A E+ + ++PN + ++L
Sbjct: 445 AKEALEVFYEMNMAGVKPNYITFVSVL 471
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 10/172 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW ++I +++ EAL AF+ M+ + P++ T + +C+ L L GR+ H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ GF+ D+++ SALVDMY+KCG L + +F ++ +N+ W S+I G + AH
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235
Query: 125 EALAMFDRMIYENVEPNG--------VTFISVLSACTHAG--LVEEGRRRFL 166
AL +F + E G + +SVLSAC+ + EG FL
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFL 287
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ N+F WNS+I LA G + EAL F M +++PN TF + +C+ + GR+
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 173
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ P++ +VD+ SK G L DA L + N V W +++ G +
Sbjct: 174 AHQQALI-FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITGYVQN 231
Query: 224 RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKI 266
+ A + E ++ E + G + ++ A VS + +++
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRV 274
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 227/332 (68%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M RD+ISW ++I Y+QN E+++ F+ M K+ I+ + VT++ VL ACAH G+ L
Sbjct: 168 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 227
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH V+++G + +V++G++++DMY KCG ++ + F ++REKN+ W++++ G +
Sbjct: 228 GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGM 287
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A EAL +F M V+PN +TF+SVL+AC+HAGL+EEG F +M+ + + P VE
Sbjct: 288 HGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVE 347
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG L++A +LI+ K +P+ V+WGALLG C++H+N+++ I+ +L L
Sbjct: 348 HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 407
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P N GY LL N+YA+ RW +V ++R+ MK G+ K PG S ++++ +V+ F D+
Sbjct: 408 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKP-PGFSLVDIKGRVHVFLVGDR 466
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY L KL +L+ YVP++ ++L
Sbjct: 467 EHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVL 498
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 54/289 (18%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW ++I +++ EAL AF+ M+ + P++ T + +C+ L L GR+ H
Sbjct: 40 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------------D 93
+ GF+ D+++ SALVDMY+KCG L
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSAC 152
R+L VF + E+++ WNSII A +G + E++ +F RM+ + + N VT +VL AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRS 203
H+G S G I +V G ++D+ K G +E A +
Sbjct: 220 AHSG----------SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
+ + N W A++ G +H + + A E+ + ++PN + ++L
Sbjct: 270 MR-EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVL 317
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 218/328 (66%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ WT M++ Y+Q +A + F++M+ SG+ P +VT+ ++LS CA GALDLG+ +
Sbjct: 362 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 421
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + ++D + +ALVDMYAKCG ++ + +F + +++ WN+II G A+HG+
Sbjct: 422 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 481
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M + V+PN +TFI +L AC+HAGLV EG++ F M + + P++EHYGC
Sbjct: 482 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 541
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AGLL++A E+I+S +PN ++WGAL+ C+LH+N ++ +A +L+ +EP N
Sbjct: 542 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN 601
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY L+ N+YA +RW++ +R MK +G++K PG S IE+ V++F D+SHP
Sbjct: 602 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKE-PGHSVIEVNGTVHEFLMGDQSHPQ 660
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
I L+++ +L A YVP+ +L
Sbjct: 661 IRRINEMLAEMRRKLNEAGYVPDTSTVL 688
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ + ++SWT MI ++ + E F M+ I P+++TM +++ C GAL LG
Sbjct: 258 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLG 317
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+++ GF + + + +ALVDMY KC + + +F + +++ W +++ A
Sbjct: 318 KQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQA 377
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A +FD+M V P VT +S+LS C AG ++ G+ I E
Sbjct: 378 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGK------WVHSYIDKERVE 431
Query: 181 YGC-----MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH--IAV 233
C +VD+ +K G + A L + + +W A++ G +H E A A
Sbjct: 432 VDCILNTALVDMYAKCGDINAAGRLFIEA-ISRDICMWNAIITGFAMHGYGEEALDIFAE 490
Query: 234 NELMILEPNNSGYCTLL 250
E ++PN+ + LL
Sbjct: 491 MERQGVKPNDITFIGLL 507
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 119/220 (54%), Gaps = 6/220 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW+TMI S+NK+F AL+ EM + P +V M ++++ A + +G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214
Query: 61 REIHLYVMQIGFD--IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ +H YV++ + + V +AL+DMYAKCG L + +F L +K + W ++I G
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPE 177
E +F RM EN+ PN +T +S++ C G ++ G++ + G+S++
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ +VD+ K + +A L S++ + + +IW A+L
Sbjct: 335 LA--TALVDMYGKCSDIRNARALFDSTQNR-DVMIWTAML 371
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 10/187 (5%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
+VL AC + LG+EIH +V++ G D DV++G+AL+ MY +C ++ + LVF K+ E+
Sbjct: 99 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
++ W+++I L+ + AL + M + V P+ V +S+++ + G+
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGK--- 215
Query: 166 LSMTCGYSITPEVEHYG-----CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+M EH G ++D+ +K G L A +L + Q V W A++ GC
Sbjct: 216 -AMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLF-NGLTQKTVVSWTAMIAGC 273
Query: 221 KLHRNLE 227
LE
Sbjct: 274 IRSNRLE 280
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+RDI W +IT ++ + EALD F EM+ G+ P+ +T +L AC+H G + G++
Sbjct: 462 SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKK 521
Query: 63 I-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAVH 120
+ V G + +VD+ + G LD + + + K N W +++ +H
Sbjct: 522 LFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW MI+ Y+QN F EA++ F EM++S I P+ VT+ +VL A A +GAL+LG
Sbjct: 230 MPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IHLY + +ID +GSALVDMY+KCGS+D +L VF L ++N W++II A+H
Sbjct: 290 KWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMH 349
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ F M V PN V +I +LSAC+HAGLVEEGR F M + P +EH
Sbjct: 350 GRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEH 409
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG LE+A ELIR+ +P+ VIW ALLG CK+H+NL++ LM L
Sbjct: 410 YGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELA 469
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG L N+YA + W V ++R+ MK + I K PG SWIE+ +++F D S
Sbjct: 470 PHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD-PGCSWIEIHGIIHEFLVEDDS 528
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE-LEAML 331
H + EI + L ++ +L+ Y P LE L
Sbjct: 529 HSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFL 560
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 132/304 (43%), Gaps = 57/304 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFR---EALDAFNEMKNSG-ISPDQVTMATVLSACAHLGA 56
MP + W T++ ++ EAL F+ M G + P++ T +VL ACA
Sbjct: 78 MPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--------------- 101
L G++IH +++ GF D ++ S LV MY C ++ + +F K
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197
Query: 102 -----------------------LREKNLF---------CWNSIIEGLAVHGFAHEALAM 129
KNLF WN +I G A +G EA+ +
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINL 257
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLL 188
F M N++PN VT +SVL A G +E G +++ + G + + G +VD+
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELG--KWIHLYAGKNKIEIDDVLGSALVDMY 315
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGY 246
SK G +++AL++ + + NA+ W A++G +H E I H + + PN+ Y
Sbjct: 316 SKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAY 374
Query: 247 CTLL 250
+L
Sbjct: 375 IGIL 378
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 126/306 (41%), Gaps = 40/306 (13%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H ++ G D + ++ A +D + VF ++ E N FCWN+I+ LA
Sbjct: 36 KQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAE 95
Query: 120 HGFAH---EALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
H EAL +F M+ + V+PN TF SVL AC A + EG ++ + +
Sbjct: 96 TNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREG-KQIHGLIVKFGFH 154
Query: 176 PEVEHYGCMVDLLSKAGLLEDALEL---------------IRSSKFQPNAVIWGAL---- 216
+ +V + ++EDA L + K N V+W +
Sbjct: 155 EDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQ 214
Query: 217 --LGGCKLHRNL--EIAHIAVN--ELMILEPNNSGYCTLLLNMYAEVS------RWAEVT 264
LG K +NL E+ +V +MI +G+ +N++ E+ + +
Sbjct: 215 VRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLV 274
Query: 265 KIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYV 324
+ A+ +G + WI + + D A ++YS +DE L++ +
Sbjct: 275 SVLPAIARIGALEL---GKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETL 331
Query: 325 PELEAM 330
P+ A+
Sbjct: 332 PKRNAI 337
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 206/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT+MI C SQN + EAL+ F EM+ +G+ P+ VT+ +L AC ++ AL G+ H
Sbjct: 350 NVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G DVY+GSAL+DMYAKCG + S + F + KNL CWN++I G A+HG A
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +FD M +P+ ++F VLSAC+ +GL EEG F SM+ Y I VEHY CM
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LLS+AG LE A +IR P+A +WGALL C++H N+ + +A +L LEP+N
Sbjct: 530 VTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W EV ++R MK G+ K PG SWIE++ KV+ A DKSHP
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKN-PGCSWIEVKNKVHMLLAGDKSHPQM 648
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+I +L KL ++K Y PE+ +L
Sbjct: 649 TQIIENLDKLSMEMKKLGYFPEINFVL 675
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ S++T+I +S+ QF AL F++M G+ PD + + + ACA L AL
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H GFD D ++ S+LV MY KC + + VF ++ E ++ W++++ A
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQ 193
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
G EA +F M V+PN +++ +++ H+GL E FL M
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 39/255 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ISW MI ++ + + EA+ F +M G PD T+++VL A L L +G IH
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKC-------------------------------GSLD 93
YV++ G D + SAL+DMY KC G ++
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333
Query: 94 RSLLVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
SL +F +L+++ N+ W S+I + +G EAL +F M V+PN VT +L
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLL 393
Query: 150 SACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC + + G+ S+ G I+ +V ++D+ +K G ++ A +
Sbjct: 394 PACGNIAALMHGKAAHCFSLRRG--ISTDVYVGSALIDMYAKCGRIQ-ASRICFDGIPTK 450
Query: 209 NAVIWGALLGGCKLH 223
N V W A++ G +H
Sbjct: 451 NLVCWNAVIAGYAMH 465
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++ W +I Y+ + + +EA++ F+ M+ SG PD ++ VLSAC+ G + G
Sbjct: 447 IPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEG 506
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREKNLFC-WNSIIEGL 117
+ M + I+ + + +V + ++ G L+++ + ++ C W +++
Sbjct: 507 -SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSC 565
Query: 118 AVH 120
VH
Sbjct: 566 RVH 568
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
+L R+ H ++++ G D ++ + L+ YA + LV + E N+F ++++I
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYS 173
+ H AL+ F +M+ + P+ S + AC ++ R+ ++ G+
Sbjct: 87 YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V+ +V + K + DA + F+P+ V W AL+
Sbjct: 147 SDSFVQ--SSLVHMYIKCNQIRDAHRVF-DRMFEPDVVSWSALVAA 189
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/324 (45%), Positives = 209/324 (64%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ++W +IT Y+ N++F +A+DAF M G P + T+ VLSAC+HLGA + G
Sbjct: 150 MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG 209
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++ ++V++G+AL+DMYAKCG++ VF ++REKN++ WN +I G A++
Sbjct: 210 KWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMN 269
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL F RM+ EN +P+ VTF+ VL AC H GLV EGR +F+SM + + P +EH
Sbjct: 270 GQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEH 329
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLLE+ALELI+S +P+ +IW ALL C++H N ++ + L+ LE
Sbjct: 330 YGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE 389
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN LL N+Y+ RWAEV K+R M GI K PG S IE+ VY+F AS+
Sbjct: 390 PNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRK-VPGCSSIEINNVVYEFVASNDR 448
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
P + IY L L ++LK YV
Sbjct: 449 KPEFEAIYKQLDNLIKKLKENGYV 472
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+MI Y + +L F M I PD T VL A A L +G+ IH V+Q
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+GF DVY +ALV +Y C S+ + +F ++ E+N WN++I G + +A+
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---------RRFLSMTCGYSITPEVEH 180
F M+ + +P+ T + VLSAC+H G +G+ R L++ G +
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTA------- 230
Query: 181 YGCMVDLLSKAGL---LEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +E E IR + N W L+ G
Sbjct: 231 ---LIDMYAKCGAVYEVEKVFEEIR----EKNVYTWNVLISG 265
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 219/330 (66%), Gaps = 2/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R++++WT +I Y Q++ F + + F EM S ++P++ T+++VLSACAH+GAL G
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+++ +I+ G+ L+D+Y KCG L+ ++LVF +L EKN++ W ++I G A H
Sbjct: 326 RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +A +F M+ +V PN VTF++VLSAC H GLVEEGRR FLSM +++ + +H
Sbjct: 386 GYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL + GLLE+A LI +P V+WGAL G C LH++ E+ A + ++ L+
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQ 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG TLL N+Y+E W EV ++R MK+ + K PG SWIE++ K+ +F A D
Sbjct: 506 PSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVK-SPGFSWIEVKGKLCEFIAFDDK 564
Query: 301 HP-ASDEIYSSLSKLDEQLKLASYVPELEA 329
P SD++Y +L + Q++L + ++ A
Sbjct: 565 KPLESDDLYKTLDTVGVQMRLPDELEDVTA 594
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++WT MI + +N EA+ F EMK +G++ +++T+ +VL A + + GR +
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV 226
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ G DV+IGS+LVDMY KC D + VF ++ +N+ W ++I G
Sbjct: 227 HGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ + +F+ M+ +V PN T SVLSAC H G + GRR M SI
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGT 345
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++DL K G LE+A+ L+ + N W A++ G H
Sbjct: 346 TLIDLYVKCGCLEEAI-LVFERLHEKNVYTWTAMINGFAAH 385
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 8/247 (3%)
Query: 9 WTTMITCYSQNKQFREALD--AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
W ++I +S L A+ M+ +G+ P + T +L A L + + H +
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAH 128
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+++ G D D ++ ++L+ Y+ G D + +F +K++ W ++I+G +G A EA
Sbjct: 129 IVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA 188
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
+ F M V N +T +SVL A V GR L + G + +V +V
Sbjct: 189 MVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG-RVKCDVFIGSSLV 247
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNN 243
D+ K +DA ++ + N V W AL+ G R + + E++ + PN
Sbjct: 248 DMYGKCSCYDDAQKVFDEMPSR-NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNE 306
Query: 244 SGYCTLL 250
++L
Sbjct: 307 KTLSSVL 313
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/324 (45%), Positives = 209/324 (64%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ++W +IT Y+ N++F +A+DAF M G P + T+ VLSAC+HLGA + G
Sbjct: 150 MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG 209
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++ ++V++G+AL+DMYAKCG++ VF ++REKN++ WN +I G A++
Sbjct: 210 KWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMN 269
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL F RM+ EN +P+ VTF+ VL AC H GLV EGR +F+SM + + P +EH
Sbjct: 270 GQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEH 329
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLLE+ALELI+S +P+ +IW ALL C++H N ++ + L+ LE
Sbjct: 330 YGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE 389
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN LL N+Y+ RWAEV K+R M GI K PG S IE+ VY+F AS+
Sbjct: 390 PNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRK-VPGCSSIEINNVVYEFVASNDR 448
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
P + IY L L ++LK YV
Sbjct: 449 KPEFEAIYKQLDNLIKKLKENGYV 472
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+MI Y + +L F M I PD T VL A A L +G+ IH V+Q
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+GF DVY +ALV +Y C S+ + +F ++ E+N WN++I G + +A+
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---------RRFLSMTCGYSITPEVEH 180
F M+ + +P+ T + VLSAC+H G +G+ R L++ G +
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTA------- 230
Query: 181 YGCMVDLLSKAGL---LEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +E E IR + N W L+ G
Sbjct: 231 ---LIDMYAKCGAVYEVEKVFEEIR----EKNVYTWNVLISG 265
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/334 (44%), Positives = 217/334 (64%), Gaps = 7/334 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W M+ Y+ N REAL+ F M+ G+ PD T+A LSAC LGALDLG
Sbjct: 238 MKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLG 297
Query: 61 REIHLYVMQIGFD---IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
R + V + +D + +G+AL+DMYAKCGS + +VF K+R +++ WN++I GL
Sbjct: 298 RRV---VGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGL 354
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+ G A A+ +M + N TFI +L +CTH GLV++GRR F +MT Y I P
Sbjct: 355 GMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPR 414
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EHYG MVDLLS+AGLL++A +LI+ + NAV+WGALLGGCK+HRN ++A + +L+
Sbjct: 415 IEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLI 474
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
LEP NSG +L N+Y+ RW + K+R+ MK G+EK P SSW+E++ KV++F
Sbjct: 475 QLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEK-VPASSWVELDGKVHEFHVG 533
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DKSHP SD+IY+ L +L ++K Y P E ++
Sbjct: 534 DKSHPLSDQIYAKLDELGMEMKAMGYKPSTEVVM 567
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 2/230 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SWT +IT Y + EA+ SG+ PD T VL+ACA + L G E+
Sbjct: 143 VSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTA 202
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+ G +V++ +A VD+Y KCG +D++ VF K++ K++ W +++ G A +G EA
Sbjct: 203 AEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREA 262
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L +F M E + P+ T LSACT G ++ G RR + M + ++D
Sbjct: 263 LELFFAMQVEGMRPDCYTVAGALSACTRLGALDLG-RRVVGMLQWDEVLGNPVLGTALID 321
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ +K G +A + + + + + ++W A++ G + + +IA V ++
Sbjct: 322 MYAKCGSTGEAWMVFQKMRNR-DIIVWNAMILGLGMTGHEKIAFALVGQM 370
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 38 SPDQVTMATVLSACAHL-GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P +T + + + L L G ++H +++ + ++ ++L+++YA+CG L +
Sbjct: 71 NPSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQ 130
Query: 97 LVFFKLRE-KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
F ++R+ + W ++I G EA+ + V P+ T + VL+AC
Sbjct: 131 KAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACA-- 188
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKF 206
R + G + E G VDL K G ++ A + K
Sbjct: 189 --------RVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMK- 239
Query: 207 QPNAVIWGALLGG 219
+ V WGA++GG
Sbjct: 240 NKDVVAWGAMVGG 252
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 225/332 (67%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R+++SW MI Y+QN+++ +A++ F +M++ G ++P+ VT+ +VLSACAHLGALDL
Sbjct: 250 MPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 309
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH ++ + ++ +++G+AL DMYAKCG + + VF ++ E+++ W+ II GLA+
Sbjct: 310 GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAM 369
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G+A+EA F MI + +EPN ++F+ +L+ACTHAGLV++G F M Y ITP++E
Sbjct: 370 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 429
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC+VDLLS+AG L+ A LI S QPN ++WGALLGGC+++++ E V ++ L
Sbjct: 430 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 489
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N+SG L N+YA + R + R+ M++ + PG SWIE+ VY+F D
Sbjct: 490 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRD-NKSMKTPGCSWIEINNSVYEFFMGDS 548
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S IYS + +L ++K+A Y P+ + ++
Sbjct: 549 SHPQSLRIYSMIRELKWKMKVAGYKPKTDLVI 580
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 114/222 (51%), Gaps = 15/222 (6%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNE--MKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+I ++ ++ +SQ+ + + FN + + +PD+ T +VL ACA L + G++
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H +V + G + ++++ ++LVD+Y K G + +F ++ +++ WN++I G G
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+A +FD M+ E N V++ +++S G +EE R+ F +M ++ +
Sbjct: 209 VDKARMVFDGMM----EKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVS-----WN 259
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQ----PNAVIWGALLGGC 220
M+ ++ DA+EL R + + PN V ++L C
Sbjct: 260 AMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSAC 301
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 219/330 (66%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDLGR 61
RD++SW TMI Y+QN EAL +++M G + + VT++ VL ACAH GA+ G+
Sbjct: 257 RDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGK 316
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V+++G + +VY+G+++VDMY+KCG ++ + F K++ KN+ W+++I G +HG
Sbjct: 317 RIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHG 376
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+ EAL +F M ++PN +TFI+VL+AC+HAGL+ EGR + +M + I P VEHY
Sbjct: 377 YGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHY 436
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG L++A LI+ K +P+A +WGALL C++++N+E+A I L L+
Sbjct: 437 GCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDA 496
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
NSGY LL N+YAE W EV ++RV +K GIEK PG S +E++ K + F DKSH
Sbjct: 497 TNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKP-PGYSSVELKGKTHLFYVGDKSH 555
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIY+ L KL E++ A YVP ++L
Sbjct: 556 PQYKEIYAYLEKLLERIHDAGYVPNTGSVL 585
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 22/293 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
+P + + T M + +N L F M SG + D+ LSA A +
Sbjct: 150 IPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRG 209
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD-RSLLVFFKLREKNLFCWNSIIEGL 117
+ IH V +IG D + + ++D YAK G D + F + ++++ WN++I
Sbjct: 210 ITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDRDVVSWNTMIALY 269
Query: 118 AVHGFAHEALAMFDRM--IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
A +G + EAL ++ +M + +V N VT +VL AC HAG ++ G +R + +
Sbjct: 270 AQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTG-KRIHNQVVRMGLE 328
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN 234
V +VD+ SK G +E A + + K + N + W A++ G +H E H+ +
Sbjct: 329 DNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGK-NILSWSAMIAGYGMHGYGQEALHVFTD 387
Query: 235 -ELMILEPNNSGYCTLL-----LNMYAEVSRWAEVTKIRVAMKELGIEKRCPG 281
L+PN + T+L + +E W K E GIE PG
Sbjct: 388 MRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKT-----EFGIE---PG 432
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 218/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ +WT MI +++ E+L F+ M+N GI PD+V + TV+ ACA LGA++
Sbjct: 212 MWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKA 271
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ G+ +DV +G+A++DMYAKCGS++ + +F +++ +N+ W+++I H
Sbjct: 272 KAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYH 331
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ + PN +TF+S+L AC+HAGL+EEG+R F SM Y +TP+V+H
Sbjct: 332 GQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKH 391
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L++ALE+I + + V+WGALLG C++HR+L++A L+ L+
Sbjct: 392 YTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQ 451
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
G+ LL N+YA +W ++ K R M + G+ K PG +WIE+ K+YQF DK+
Sbjct: 452 SQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRK-IPGRTWIEVGEKLYQFGVGDKT 510
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S+EIY L +L E+L++A Y P+ +L
Sbjct: 511 HPRSNEIYKMLKRLGEKLEVAGYHPDTNDVL 541
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R SW+ ++ Y++ F F E+ SG D + V+ AC L L G
Sbjct: 111 MSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCG 170
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH ++ G D ++ + LVDMYA+C ++ + +F K+ +++L W +I LA
Sbjct: 171 RLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAES 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G E+L FDRM + + P+ V ++V+ AC G + + + +++ T GYS+ +V
Sbjct: 231 GVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGT-GYSL--DV 287
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
M+D+ +K G +E A + + + N + W A++ H E A + + +M+
Sbjct: 288 ILGTAMIDMYAKCGSVESARWIFDRMQVR-NVITWSAMIAAYGYHGQGEKA-LELFPMML 345
Query: 239 ---LEPNNSGYCTLL 250
+ PN + +LL
Sbjct: 346 RSGILPNRITFVSLL 360
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + G ++ + + L+ MY + G+L+ + +F + +++ + W+ I+ G A
Sbjct: 70 RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G MF ++ + + V+ AC ++ GR +++ CG +
Sbjct: 130 GNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGL----DYG 185
Query: 180 HYGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
H+ C +VD+ ++ ++EDA ++ ++ + W ++G
Sbjct: 186 HFVCATLVDMYARCKVVEDAHQIF-VKMWKRDLATWTVMIG 225
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 210/323 (65%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +MI+ Y QN + EAL+ F EM +G+S D + + ++LSACA +GALD+G
Sbjct: 249 MPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMG 308
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y+ + DV++ +ALVDMYAKCG +D + VF + KNL WN+++ GLA+H
Sbjct: 309 RWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIH 368
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F +M V PN +TF++VLSAC+H G VEEG ++F M ++ITP+VEH
Sbjct: 369 GHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEH 428
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L + GL+ +A E+IR+ +PN VIWGALL CK+H + V + L
Sbjct: 429 YGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLV 488
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ G LL N++A S+W EV K R MK++G+EK+ PG S IE++ V+ F A D+
Sbjct: 489 SEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRL 548
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
H E+ + + +L+ L++ Y
Sbjct: 549 HSKWREVSTVIERLNTHLEVKGY 571
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 16/221 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D SWTTMI + + K +AL+ + M+ G+ ++ T VL A + GR +H
Sbjct: 90 DSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVH 149
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++GF DV+ +AL+ MY KCGS+ + L+F ++ N+ WN++I G G
Sbjct: 150 GKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTE 209
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYG 182
A +F M NV ++ +V+ + G V+ R F + PE V +G
Sbjct: 210 RARRLFGEMPERNVG----SWNAVVGGYSKLGHVDIARSLF-------DLMPERDVVSWG 258
Query: 183 CMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGC 220
M+ + G +ALEL + + +++I ++L C
Sbjct: 259 SMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSAC 299
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++IH ++ G D +I + V+ YA ++D + VF + + + W ++I G
Sbjct: 44 KKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVE 103
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITP 176
+AL + M VE N TF+ VL A +EGR + + + Y +
Sbjct: 104 AKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFT 163
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
++ + K G + DA L+ N V W ++ GC
Sbjct: 164 R----NALIHMYLKCGSITDA-HLLFDEMPNHNVVTWNTMITGC 202
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 219/338 (64%), Gaps = 12/338 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-----------KNSGISPDQVTMATVLS 49
MP R++ SW +I Y +N F+EAL+ F M + + P+ T+ VL+
Sbjct: 276 MPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLT 335
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
AC+ LG L++G+ +H+Y IG+ ++++G+AL+DMYAKCG ++++L VF L K++
Sbjct: 336 ACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIIT 395
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WN+II GLA+HG +AL++F+RM P+GVTF+ +LSACTH GLV G F SM
Sbjct: 396 WNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMV 455
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
YSI P++EHYGCMVDLL +AGL++ A++++R +P+AVIW ALLG C++++N+E+A
Sbjct: 456 DDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMA 515
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289
+A+ L+ LEPNN G ++ N+Y ++ R +V +++VAM++ G K PG S I
Sbjct: 516 ELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRK-VPGCSVIGCND 574
Query: 290 KVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
+ +F + D+ HP +D IY +L L L+ YVP L
Sbjct: 575 SMVEFYSLDERHPETDSIYRALQGLTILLRSHGYVPNL 612
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
+W M Y+Q + + F M +G SP+ T V+ +CA A G E+H V
Sbjct: 87 TWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVV 146
Query: 68 MQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFKLREKNLFCWNSII 114
+ GF + ++G AL+ MY+ G + + VF ++R+KN+F W +I+
Sbjct: 147 AKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIV 195
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M +++ +WT ++ + + A F+ ++P D V V+S LG +
Sbjct: 183 MRDKNVFAWTAIVAAHVACRDMVSARRLFD------LAPQRDVVLWNVVVSGYIELGDMV 236
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
RE+ + D DV + ++ YA G ++ + +F ++ +N++ WN +I G
Sbjct: 237 AARELFDRMP----DRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYV 292
Query: 119 VHGFAHEALAMFDRMIY-----------ENVEPNGVTFISVLSACTHAGLVEEGR-RRFL 166
+G EAL F RM+ V PN T ++VL+AC+ G +E G+
Sbjct: 293 RNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVY 352
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + GY V + ++D+ +K G++E AL++ + + + W ++ G +H
Sbjct: 353 AESIGYKGNLFVGN--ALIDMYAKCGVIEKALDVFDGLDVK-DIITWNTIINGLAMH 406
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+I ++ G + + Y+ + + A+ G + R+ VF K + N WN++ G A
Sbjct: 40 QIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQAN 99
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ + +F RM PN TF V+ +C A +EG
Sbjct: 100 CHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEG 139
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 145/330 (43%), Positives = 218/330 (66%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALDLGR 61
+D++SW +MI Y+QN +AL + +M N I + VT++ +L ACAH G + G+
Sbjct: 258 KDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGK 317
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V+++G + +VY+G+++VDMY+KCG ++ + F K++EKN+ W+++I G +HG
Sbjct: 318 CIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHG 377
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F+ M PN +TFISVL+AC+HAGL+++GR + +M + I P VEHY
Sbjct: 378 HGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHY 437
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG L++A LI+ K +P+A IWGALL C++H+N+E+A I+ L L+
Sbjct: 438 GCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDA 497
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N GY LL N+YAE W +V ++RV +K GIEK PG S +E++ + + F DKSH
Sbjct: 498 TNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKP-PGYSSVELKGRTHLFYVGDKSH 556
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIYS L KL E+++ A YVP ++L
Sbjct: 557 PQHKEIYSYLGKLLEKMQEAGYVPNTGSVL 586
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 16/290 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALD 58
+P+ + + T M + Y +N +L F ++ SG + D+ SA A +
Sbjct: 151 IPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCG 210
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD-RSLLVFFKLREKNLFCWNSIIEGL 117
+ +H V++ G D D + + ++D YAK G D + F EK++ WNS+I
Sbjct: 211 ITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEKDVVSWNSMIALY 270
Query: 118 AVHGFAHEALAMFDRM--IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
A +G + +AL ++ +M + +++ N VT ++L AC HAG ++ G + + +
Sbjct: 271 AQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTG-KCIHNQVVRMGLE 329
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
V +VD+ SK G +E A + + K + N + W A++ G +H + + A NE
Sbjct: 330 ENVYVGTSVVDMYSKCGRVEMARKAFQKIK-EKNILSWSAMITGYGMHGHGQEALDIFNE 388
Query: 236 LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRV---AMKE-LGIEKRCPG 281
M N Y T +++ A S + K R AMK+ GIE PG
Sbjct: 389 -MCRSGQNPNYIT-FISVLAACSHAGLLDKGRYWYNAMKKRFGIE---PG 433
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT+MI C SQN + EAL+ F EM+ +G+ P+ VT+ +L AC ++ AL G+ H
Sbjct: 350 NVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G DVY+GSAL+DMYAKCG + S + F + KNL CWN++I G A+HG A
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +FD M +P+ ++F VLSAC+ +GL EEG F SM+ Y I VEHY CM
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LLS+AG LE A +IR P+A +WGALL C++H N+ + +A +L LEP+N
Sbjct: 530 VTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W EV ++R MK G+ K PG SWIE++ KV+ A DKSHP
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKN-PGCSWIEVKNKVHMLLAGDKSHPQM 648
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+I L KL ++K Y PE+ +L
Sbjct: 649 TQIIEKLDKLSMEMKKLGYFPEINFVL 675
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ S++T+I +S+ QF AL F++M G+ PD + + + ACA L AL
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H GFD D ++ S+LV MY KC + + VF ++ E ++ W++++ A
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQ 193
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
G EA +F M V+PN +++ +++ H+GL E FL M
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 39/255 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ISW MI ++ + + EA+ F +M G PD T+++VL A L L +G IH
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKC-------------------------------GSLD 93
YV++ G D + SAL+DMY KC G ++
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333
Query: 94 RSLLVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
SL +F +L+++ N+ W S+I + +G EAL +F M V+PN VT +L
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLL 393
Query: 150 SACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC + + G+ S+ G I+ +V ++D+ +K G ++ A +
Sbjct: 394 PACGNIAALMHGKAAHCFSLRRG--ISTDVYVGSALIDMYAKCGRIQ-ASRICFDGIPTK 450
Query: 209 NAVIWGALLGGCKLH 223
N V W A++ G +H
Sbjct: 451 NLVCWNAVIAGYAMH 465
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++ W +I Y+ + + +EA++ F+ M+ SG PD ++ VLSAC+ G + G
Sbjct: 447 IPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEG 506
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREKNLFC-WNSIIEGL 117
+ M + I+ + + +V + ++ G L+++ + ++ C W +++
Sbjct: 507 -SYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSC 565
Query: 118 AVH 120
VH
Sbjct: 566 RVH 568
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
+L R+ H ++++ G D ++ + L+ YA + LV + E N+F ++++I
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYS 173
+ H AL+ F +M+ + P+ S + AC ++ R+ ++ G+
Sbjct: 87 YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V+ +V + K + DA + F+P+ V W AL+
Sbjct: 147 SDSFVQ--SSLVHMYIKCNQIRDAHRVF-DRMFEPDVVSWSALVAA 189
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/323 (45%), Positives = 207/323 (64%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW +I Y Q +++EAL F EM GI P+Q T+ + L+ACA LG+LD G
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H YV + ++ +G+ALVDMY+KCG +D +LLVF KL K+++ W ++I GLA+
Sbjct: 326 RWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMR 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +L +F +MI V+PNGVTF+ VLSAC H GLV+EG F M C Y + P V+H
Sbjct: 386 GDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG LE+A++ I S +P +WGAL GC +H+ E+ N L+ L+
Sbjct: 446 YGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQ 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL N+Y+ +W +R MK G++K P SWIE+ +++F A DKS
Sbjct: 506 PHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKS-PACSWIEVNGVIHEFIAFDKS 564
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
H S +Y L + QLKLA+Y
Sbjct: 565 HIESINVYMMLGSVTAQLKLATY 587
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 46/308 (14%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT +I +N + EAL+ F EM++SG+ D+VT+ +VL A A L + GR +
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWV 226
Query: 64 HLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H + ++ G I DVY+GSALVDMY+KCG D ++ VF ++ +NL W ++I G
Sbjct: 227 HGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNR 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F MI E +EPN T S L+AC G +++G R+L S G
Sbjct: 287 YKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG--RWLHEYVDRSKLGLNSKLG 344
Query: 183 -CMVDLLSKAGLLEDAL-----------------------------------ELIRSSKF 206
+VD+ SK G +++AL ++IR S+
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIR-SRV 403
Query: 207 QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI----LEPNNSGYCTLLLNMYAEVSRWAE 262
QPN V + +L C H L + + LMI LEPN Y ++++ R E
Sbjct: 404 QPNGVTFLGVLSACA-HGGLVDEGLELFRLMICDYRLEPNVDHY-GCMVDLLGRAGRLEE 461
Query: 263 VTKIRVAM 270
K +M
Sbjct: 462 AIKFIESM 469
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 26/252 (10%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W T++ +S + Q + L A++ ++N G+ PD+ T +L A + L + + +
Sbjct: 69 IFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYA 127
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++++ G D D ++ ++LV +A CG +D S +F + +K++ W ++I G +G A E
Sbjct: 128 HIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVE 187
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSAC-----------THAGLVEEGRRRFLSMTCGYSI 174
AL F M VE + VT +SVL A H VE GR +
Sbjct: 188 ALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGR-----------V 236
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
+V +VD+ SK G +DA+++ + N V WGAL+ G + A
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR-NLVSWGALIAGYVQCNRYKEALKVFQ 295
Query: 235 ELMI--LEPNNS 244
E++I +EPN S
Sbjct: 296 EMIIEGIEPNQS 307
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 6/183 (3%)
Query: 39 PDQVTMATVLSACAH-LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
P T+ + C H G D + ++ G + S L+ K L +LL
Sbjct: 2 PKLATLRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATK--DLGYTLL 59
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F +L +F WN+I+ + L + R+ V P+ TF +L A + L
Sbjct: 60 LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA--FSKL 117
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
E +F + + + + +V + G ++ + L + + + V W AL+
Sbjct: 118 RNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA-KKDVVSWTALI 176
Query: 218 GGC 220
GC
Sbjct: 177 NGC 179
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 142/327 (43%), Positives = 216/327 (66%), Gaps = 1/327 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D++ +T+++T Y+Q+ Q EAL + EM++ GI PD +++L+ACA L A + G+
Sbjct: 375 PIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H+++++ GF D++ G++LV+MYAKCGS++ + F ++ + + W+++I GLA HG
Sbjct: 435 QVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+ EAL +F +M+ V PN +T +SVL AC HAGLV E + F SM + I P EHY
Sbjct: 495 YGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHY 554
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CM+DLL +AG LE A+EL+ FQ NA++WGALLG ++H+N+++ A L+ LEP
Sbjct: 555 ACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP 614
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
SG LL N+YA V W +V ++R MK+ G K+ PG SW+E++ KVY F D+SH
Sbjct: 615 EKSGTHVLLANIYASVGMWDKVARVRRLMKD-GKVKKEPGMSWLEVKDKVYTFIVGDRSH 673
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELE 328
S EIY+ L +L + LK A YVP +E
Sbjct: 674 SRSTEIYAKLDELSDLLKKAGYVPMVE 700
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 120/222 (54%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R ++SW + +CY + EA+ F++M SGI P++ +++++++ C L G
Sbjct: 71 IPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQG 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH Y++++G+D D + +ALVDMYAK G L+ + VF ++ + ++ WN+II G +H
Sbjct: 131 RKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLH 190
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITPE 177
+ H AL + M + PN T S L AC L E GR+ + M G
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLG 250
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V ++D+ SK ++DA L+ + + + W A++ G
Sbjct: 251 VG----LIDMYSKCNSMDDA-RLVFKLMPERDMIAWNAVISG 287
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+I+W +I+ +SQN++ EA F M GI +Q T++TVL + A L A +
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMC 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++ GF+ D Y+ ++L+D Y KCG ++ + VF + +L + S++ A
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL ++ M ++P+ S+L+AC E+G++ + + + ++
Sbjct: 393 GQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSDIFA 451
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVI-WGALLGGCKLH 223
+V++ +K G +EDA S+ ++ W A++GG H
Sbjct: 452 GNSLVNMYAKCGSIEDA--SCAFSRIPVRGIVSWSAMIGGLAQH 493
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 146/292 (50%), Gaps = 12/292 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+SW +I ++ AL+ EM SG+ P+ T+++ L ACA + +LGR++H
Sbjct: 176 DIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLH 235
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ D ++G L+DMY+KC S+D + LVF + E+++ WN++I G + +
Sbjct: 236 SSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDE 295
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHY-- 181
EA ++F M E + N T +VL + R+ LS+ G+ E ++Y
Sbjct: 296 EAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGF----EFDNYVV 351
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--L 239
++D K G +EDA + S + V++ +L+ E A E+ +
Sbjct: 352 NSLIDTYGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG-IEKRCPGSSWIEMERK 290
+P +S C+ LLN A +S + + ++ V + + G + G+S + M K
Sbjct: 411 KP-DSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAK 461
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 32/297 (10%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
GI ++ +VL AC L LG+++H V+ GFD D ++ ++LV +YAKCG +
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAH-EALAMFDRMIYENVEPNGVTFISVLSACTH 154
+F + ++++ WN++ VH H EA+++F M+ + PN + S+++ CT
Sbjct: 65 RSLFDAIPDRSVVSWNALFS-CYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTG 123
Query: 155 AGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF----QPN 209
+GR+ + GY + +VD+ +K G+LEDA SS F +P+
Sbjct: 124 LEDSVQGRKIHGYLIKLGYD--SDAFSANALVDMYAKVGILEDA-----SSVFDEIAKPD 176
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269
V W A++ GC LH E H A+ ++ E N SG C + + + + A +A
Sbjct: 177 IVSWNAIIAGCVLH---EYHHRALE--LLREMNKSGMCPNMFTLSSALKACA-----GMA 226
Query: 270 MKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
++ELG R SS I+M+ F ++YS + +D+ + +PE
Sbjct: 227 LRELG---RQLHSSLIKMDMGSDSFLGV-----GLIDMYSKCNSMDDARLVFKLMPE 275
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I+SW+ MI +Q+ +EAL F +M G+ P+ +T+ +VL AC H G +
Sbjct: 475 IPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEA 534
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+ + M+I F I+ + ++D+ + G L+ ++ + K+ + N W +++
Sbjct: 535 KH-YFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAA 593
Query: 118 AVH 120
+H
Sbjct: 594 RIH 596
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 219/329 (66%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DIISW MI YS ++EAL F +M+ S + P+ VT ++L ACA+LGALDLG+ I
Sbjct: 328 KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387
Query: 64 HLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H Y+ + + + + ++L+DMYAKCG+++ + VF ++ K+L WN++I GLA+HG
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGH 447
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A+ AL +F +M E EP+ +TF+ VLSAC+HAGLVE GR+ F SM Y I+P+++HYG
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYG 507
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL +AGL ++A L+++ + +P+ IWG+LLG C++H N+E+ A L LEP
Sbjct: 508 CMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N G LL N+YA RW +V +IR + + G+ K+ PG S IE++ V++F DK H
Sbjct: 568 NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGM-KKVPGCSSIEVDSVVHEFLVGDKVHE 626
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
S +IY L ++D+ L+ A +VP+ +L
Sbjct: 627 QSQDIYKMLDEIDQLLEKAGHVPDTSEVL 655
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 17/237 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD +SW MI Y+Q+ +F EAL F EMK + ++P++ TM TVLSACA G+L+LG
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ ++ G ++ + +AL+DMY+KCG LD++ +F + EK++ WN +I G +
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EALA+F +M NVEPN VTF+S+L AC + G ++ G+ ++FL +T
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLT---- 399
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV-IWGALLGGCKLHRNLEIA 229
+ ++D+ +K G +E A ++ K P ++ W A++ G +H + +A
Sbjct: 400 ---NTSLWTSLIDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGHANMA 451
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 41/278 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TMI S + A+D + M G+ P+ T +L +CA +GA G++IH +V+
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVL 159
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE--------------------KN 106
++G + D ++ ++L++MYA+ G L + LVF K LR+ +
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARR 219
Query: 107 LF---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
LF WN++I G A G EALA F M NV PN T ++VLSAC +G
Sbjct: 220 LFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS 279
Query: 158 VEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+E G R ++ + + + ++D+ SK G L+ A +L + + + W
Sbjct: 280 LELGNWVRSWIE---DHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISWNV 335
Query: 216 LLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
++GG H N +A+ M +EPN+ + ++L
Sbjct: 336 MIGGYS-HMNSYKEALALFRKMQQSNVEPNDVTFVSIL 372
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
T+LS C L ++IH +++ G + S L++ A G+L +LL+F +
Sbjct: 37 TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ N F WN++I G ++ A+ + RM+ VEPN TF +L +C G +EG++
Sbjct: 94 QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153
Query: 164 -RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
+ G P V + ++++ ++ G L A EL+ S +AV + AL+ G L
Sbjct: 154 IHGHVLKLGLESDPFV--HTSLINMYAQNGELGYA-ELVFSKSSLRDAVSFTALITGYTL 210
Query: 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
L+ A E+ + ++ ++ YA+ R+ E MK +
Sbjct: 211 RGCLDDARRLFEEIPV---RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + + SW MI+ + + AL+ F +M++ G PD +T VLSAC+H G ++LG
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGL 117
R+ +++ +DI + ++D+ + G D + + + K + W S++
Sbjct: 487 RQCFSSMVE-DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGAC 545
Query: 118 AVHG 121
VHG
Sbjct: 546 RVHG 549
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 212/326 (65%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA+++++WT M++ +Q EA F EMK + I D V + ++L+ACA G L LG
Sbjct: 358 MPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALG 417
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH +V Q + +AL+DM+ KCG ++R+ +F ++ EK+ WN II G A+
Sbjct: 418 KRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAM 477
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M + P+ VT I+VLSACTH GLVEEGRR F +M Y I PE+E
Sbjct: 478 HGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIE 537
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL + GL+++A+++I+S ++PN VIWG+LL C+LH+N+E A +A NEL L
Sbjct: 538 HYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAANELSNL 597
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N+G +L N+YAE +W+++ K RV MK G +K GSSWIE++ ++F D+
Sbjct: 598 QPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTA-GSSWIELDEAFHEFTVGDR 656
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
HP SD+I + +L +K VP
Sbjct: 657 KHPESDQISDMIDRLSSHVKCVGCVP 682
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW T + + + A F+EM D V+ T+L A G +
Sbjct: 265 MTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEK----DTVSWNTMLDGYAKAGEAEEA 320
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E L+ G ++ + S +V Y K G ++ + ++F K+ KNL W ++ A
Sbjct: 321 FE--LFQRMPGRNVVSW--STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQK 376
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITPE 177
G EA +F M +E + V +S+L+AC +G + G+ R G S
Sbjct: 377 GLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTL-- 434
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++D+ K G + A + + + ++V W ++GG +H + E A
Sbjct: 435 --VCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKA 484
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 65/289 (22%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
T++ Y+ N AL F +M D T + ++ A A G + R H +V +
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLR--QRDTFTYSFLIKALATAGVTPV-RAAHTHVFK 232
Query: 70 IGFDIDVYIGSALVDMYAKC-------------------------------GSLDRSLLV 98
+G D ++G+AL+D Y+K G +D + +
Sbjct: 233 LGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSM 292
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F ++ EK+ WN++++G A G A EA +F RM NV V++ +V+SA G +
Sbjct: 293 FDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNV----VSWSTVVSAYCKKGDM 348
Query: 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGA 215
E R F M +T + MV ++ GL+ +A L ++ + + + V +
Sbjct: 349 EMARVIFDKMPAKNLVT-----WTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVS 403
Query: 216 LLGGC----------KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254
+L C ++HR++ + + L+ C L++M+
Sbjct: 404 ILAACAESGCLALGKRIHRHVRQRKLGRSTLV---------CNALMDMF 443
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W +MI ++ N + EAL F EM G+ PD T+ ++LSA A LGAL+LG
Sbjct: 179 MKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELG 238
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H+Y++++G + ++ ++L+D+YAKCG++ + VF ++ E+N W S+I GLAV+
Sbjct: 239 RRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVN 298
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F M + + P+ +TF+ VL AC+H G+++EG F M I P +EH
Sbjct: 299 GFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEH 358
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGL++ A E I++ QPNAVIW LLG C +H +L + IA + L+ LE
Sbjct: 359 YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLE 418
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA RW++V IR +M + G+ K+ PG S +E+ +VY+F D+S
Sbjct: 419 PKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGV-KKTPGYSLVELGNRVYEFTMGDRS 477
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S ++Y+ L K+ E LKL YVP +L
Sbjct: 478 HPQSQDVYALLEKITELLKLEGYVPHTANVL 508
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 119/216 (55%), Gaps = 4/216 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +W T+I Y+++ A + +M S + PD T +L A + + G IH
Sbjct: 82 NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIH 141
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF+ V++ ++L+ +YA CG + + VF ++E++L WNS+I G A++G +
Sbjct: 142 SVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPN 201
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGC 183
EAL +F M E VEP+G T +S+LSA G +E GRR + + G S V +
Sbjct: 202 EALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTN--S 259
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL +K G + +A + + S + NAV W +L+ G
Sbjct: 260 LLDLYAKCGAIREA-QRVFSEMSERNAVSWTSLIVG 294
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + N+F WN+II G A A + +M+ VEP+ T+ +L A + +
Sbjct: 74 VFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLN 133
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
V EG S+T V ++ + + G E A ++ K + + V W +++
Sbjct: 134 VREG-EAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMK-ERDLVAWNSMI 191
Query: 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTL-LLNMYAEVSRWAEVTKIRVAMKELGIE 276
G L+ A E+ + G+ + LL+ AE+ ++ V + ++G+
Sbjct: 192 NGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLS 251
Query: 277 K 277
K
Sbjct: 252 K 252
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 217/328 (66%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++ WTTMI+ Y ++ +EAL F EM SGI PD V+M +V+SACA+LG LD + +
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G + ++ I +AL++MYAKCG LD + VF K+ +N+ W+S+I L++HG A
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEA 426
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL++F RM ENVEPN VTF+ VL C+H+GLVEEG++ F SMT Y+ITP++EHYGC
Sbjct: 427 SDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGC 486
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDL +A LL +ALE+I S N VIWG+L+ C++H LE+ A ++ LEP++
Sbjct: 487 MVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ N+YA RW +V IR M+E + K G S I+ K ++F DK H
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKE-KGLSRIDQNGKSHEFLIGDKRHKQ 605
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S+EIY+ L ++ +LKLA YVP+ ++L
Sbjct: 606 SNEIYAKLDEVVSKLKLAGYVPDCGSVL 633
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 37/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W TMI Y + EA F EMK+S + PD++ + ++SAC G +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KC 89
R I+ ++++ +D ++ +ALV MYA KC
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G LD + ++F + +K+L CW ++I + EAL +F+ M ++P+ V+ SV+
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVI 351
Query: 150 SACTHAGLVEEGRRRFLSMTCGY--SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
SAC + G++++ + +C + + E+ ++++ +K G L DA + +
Sbjct: 352 SACANLGILDKAK---WVHSCIHVNGLESELSINNALINMYAKCGGL-DATRDVFEKMPR 407
Query: 208 PNAVIWGALLGGCKLH 223
N V W +++ +H
Sbjct: 408 RNVVSWSSMINALSMH 423
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 96/203 (47%), Gaps = 2/203 (0%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
S++ + R + + +++ G DQ + +L A + + AL G E+H +I D
Sbjct: 87 SRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDP 146
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + +DMYA CG ++ + VF ++ +++ WN++IE G EA +F+ M
Sbjct: 147 FVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDS 206
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196
NV P+ + +++SAC G + R + + + +V + + AG ++
Sbjct: 207 NVMPDEMILCNIVSACGRTGNMRYNRAIY-EFLIENDVRMDTHLLTALVTMYAGAGCMDM 265
Query: 197 ALELIRSSKFQPNAVIWGALLGG 219
A E R + N + A++ G
Sbjct: 266 AREFFRKMSVR-NLFVSTAMVSG 287
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW++MI S + + +AL F MK + P++VT VL C+H G ++ G
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
++I M ++I + +VD++ + L +L V + N+ W S++
Sbjct: 465 KKI-FASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523
Query: 118 AVHG 121
+HG
Sbjct: 524 RIHG 527
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 211/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W M+ Y+ N REALD F M+ G+ PD +A LSAC LGALDLG
Sbjct: 280 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ V F + +G+AL+DMYAKCGS + +VF ++R+K++ WN++I GL +
Sbjct: 340 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 399
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A + +M V+ N TFI +L +CTH GL+++GRR F +MT Y I+P +EH
Sbjct: 400 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 459
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS+AGLL++A +LI NAVI GALLGGCK+HRN E+A + +L+ LE
Sbjct: 460 YGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE 519
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+Y+ RW + K+R+ MKE G+EK P SW+E E KV++F DKS
Sbjct: 520 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEK-VPACSWVEFEGKVHEFRVGDKS 578
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD+IY L +L ++K Y P E ++
Sbjct: 579 HPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 609
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +SWT +IT Y REA+ +G+ PD T VL+ACA + L G
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 238
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Q G V++ +A VD+Y KCG + ++ VF K+R+K+ W +++ G A +
Sbjct: 239 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 298
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M E V P+ LSACT G ++ GR+ + + V
Sbjct: 299 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 358
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +A + + + + + ++W A++ G
Sbjct: 359 TA-LIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMILG 395
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 38 SPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P +T L + + L L G ++H +++ + ++ ++L+ +YA+CG L R+
Sbjct: 114 NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 173
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF ++ + W ++I G EA+ + + P+ T + VL+AC
Sbjct: 174 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA--- 230
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQ 207
R + G ++ E G VDL K G + A E+ +
Sbjct: 231 -------RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR-D 282
Query: 208 PNAVIWGALLGG 219
+AV WGA++GG
Sbjct: 283 KDAVAWGAMVGG 294
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/333 (43%), Positives = 219/333 (65%), Gaps = 4/333 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M+T Y+QN + REAL+ F M+ +G+ D+VT+ V+SACA LGA
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ Q GF +V +GSAL+DMYAKCGS++ + VF ++ E+N++ ++S+I G A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A A+ +FD M+ ++PN VTFI VL+AC+HAG+VE+G++ F M + + P
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVDLL +AG LE+AL L++ P+ +WGALLG C++H N ++A IA + L
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK-VYQFAAS 297
LEPN G LL N+YA RW +V+K+R M+ G++K PG SW+E ++ +++F A
Sbjct: 472 LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKN-PGCSWVEGKKGIIHEFFAG 530
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
D SHP S EI +L L ++LK Y P L ++
Sbjct: 531 DMSHPKSREIKQALEDLLDRLKYLGYQPNLSSV 563
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 152/352 (43%), Gaps = 55/352 (15%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
WT +I Y+ F E++ +N M+ GI P T +L AC+ ++LGR++H +
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTI 166
Query: 69 QIG-FDIDVYIGSALVDMYAKCGSL-----------DRSLL------------------- 97
IG F D+Y+G+ L+DMY KCG L DR ++
Sbjct: 167 LIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAAS 226
Query: 98 -VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+F L K++ W +++ G A + EAL +F+RM V+ + VT + V+SAC G
Sbjct: 227 ELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLG 286
Query: 157 LVEEGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ R ++ G+ T V ++D+ +K G +EDA ++ + + N + +
Sbjct: 287 AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERME-ERNVYSYSS 345
Query: 216 LLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273
++ G +H A +E++ E PN + +L A
Sbjct: 346 MIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVL-----------------TACSHA 388
Query: 274 GIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
G+ ++ G M + + A S+ + ++ +L+E L L +P
Sbjct: 389 GMVEQ--GQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMP 438
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL-----LV 98
+ +VL C H+ + +++H ++ + G + ++ + L+ K LD + LV
Sbjct: 42 LVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTK---LDVPMDPYPRLV 95
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F ++ N F W ++I G A+ G E++ +++ M + + P TF ++L AC+ A V
Sbjct: 96 FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155
Query: 159 EEGRR 163
GR+
Sbjct: 156 NLGRQ 160
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 213/332 (64%), Gaps = 8/332 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +I Y+QN + EAL F +K I P T +LSACA+L L LG
Sbjct: 341 MTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLG 400
Query: 61 REIHLYVMQIGFDI------DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R+ H +V++ GF+ D+++G++L+DMY KCGS++ VF K++E++ WN+II
Sbjct: 401 RQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAII 460
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G+ EAL +F +M+ +P+ VT I VL AC+HAGLVEEGR F SM + +
Sbjct: 461 VGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-EHGL 519
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CMVDLL +AG L +A LI + P+AV+WG+LL CK+H N+E+ A
Sbjct: 520 IPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAE 579
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L+ ++P NSG LL NMYAE+ RW +V ++R M++ G+ K+ PG SWIE+E +V+ F
Sbjct: 580 KLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ-PGCSWIEVESRVHVF 638
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
DKSHP +IYS L L EQ+K Y+P+
Sbjct: 639 LVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPD 670
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 128/249 (51%), Gaps = 30/249 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D SW +M++ ++Q+ +F E+L+ F +M ++ + + LSACA L L++G
Sbjct: 107 MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMG 166
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V + + DVY+GSAL+DMY+KCGS+ + VF + E+NL WNS+I +
Sbjct: 167 TQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQN 226
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F RM+ +EP+ VT SV+SAC ++EG + + ++
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 181 YGCMVDLLSKAGLLEDALEL------------------------IRSSKF------QPNA 210
+VD+ +K + +A + +++++F Q N
Sbjct: 287 GNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV 346
Query: 211 VIWGALLGG 219
V W AL+ G
Sbjct: 347 VSWNALIAG 355
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++W ++ITCY QN EAL+ F M +SG+ PD+VT+A+V+SACA L AL G
Sbjct: 208 MIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEG 267
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKC------------------------------ 89
+IH V++ F D+ +G+ALVDMYAKC
Sbjct: 268 LQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYAR 327
Query: 90 -GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
S+ + +F K+ ++N+ WN++I G +G EAL +F + E++ P TF ++
Sbjct: 328 AASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNL 387
Query: 149 LSACTHAGLVEEGRRRFLS-MTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELIRS 203
LSAC + + GR+ + G+ E ++D+ K G +ED +
Sbjct: 388 LSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEK 447
Query: 204 SKFQPNAVIWGALLGG 219
K + + V W A++ G
Sbjct: 448 MK-ERDCVSWNAIIVG 462
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P+ A +L +C + R +H ++ F ++++I + L+D+Y KC LD + +
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F ++ ++N F WNS+I L GF EA +F M EP+ ++ S++S
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSM----PEPDQCSWNSMVSGFAQHDRF 128
Query: 159 EEGRRRFLSM 168
EE F+ M
Sbjct: 129 EESLEYFVKM 138
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 215/329 (65%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
AR+ ++W TMI+ Y Q +F A+ F +M++ + P +VTM ++LSACAHLGALD+G
Sbjct: 167 ARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 226
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH Y+ IDV +G+AL+DMY KCG+L+ ++ VF L KN+FCWNSII GL ++G
Sbjct: 227 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+A F M E ++P+GVTF+ +LS C+H+GL+ G+R F M Y + P VEHYG
Sbjct: 287 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 346
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG L++ALELIR+ +PN+++ G+LL C++H++ ++ +L+ L+P
Sbjct: 347 CMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPC 406
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+ G L N+YA +SRW +V R M + G+ K PG S IE+ V++F A D SHP
Sbjct: 407 DGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKT-PGCSSIEVNNIVHEFVAGDTSHP 465
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+I + L ++ ++LK +VP +L
Sbjct: 466 QFTQINAFLDEIAKELKGQGHVPNTANVL 494
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 9/186 (4%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M + + P + + + +L +CA G LG H +M++GF+ D+ + + L+D YAK G
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L + VF + +++ N++I L+ HG+ EA +FD M E N ++ S+++
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITC 116
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G + R F C + +V + ++D K+ L A EL N+V
Sbjct: 117 YCKLGDINSARLMF---DC--NPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSV 171
Query: 212 IWGALL 217
W ++
Sbjct: 172 TWNTMI 177
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++ MI+ S++ EA + F+ M + + ++++ LG ++
Sbjct: 71 MPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITCYCKLGDINSA 126
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIE 115
R + FD DV +A++D Y K L + +F + +N WN++I
Sbjct: 127 R--------LMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMIS 178
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G A++MF +M ENV+P VT +S+LSAC H G ++ G GY T
Sbjct: 179 AYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE-----WIHGYIRT 233
Query: 176 P----EVEHYGCMVDLLSKAGLLEDALE----LIRSSKFQPNAVIWGALLGG 219
+V ++D+ K G LE A++ L R + F N++I G + G
Sbjct: 234 KRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG 285
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W M+ Y+ N REALD F M+ G+ PD +A LSAC LGALDLG
Sbjct: 233 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 292
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ V F + +G+AL+DMYAKCGS + +VF ++R+K++ WN++I GL +
Sbjct: 293 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 352
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +M V+ N TFI +L +CTH GL+++GRR F +MT Y I+P +EH
Sbjct: 353 GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 412
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGLL++A +L+ NAVI GALLGGCK+HRN E+A + +L++LE
Sbjct: 413 YGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLE 472
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+Y+ RW + K+R+ MK G+EK P SW+E E KV++F DKS
Sbjct: 473 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK-VPACSWVEFEGKVHEFRVGDKS 531
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD+IY L +L ++K Y P E ++
Sbjct: 532 HPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 562
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 2/236 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + WT +IT Y REA+ +G+ PD T VL+ACA + L G
Sbjct: 132 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 191
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Q G V++ +A VD+Y KCG + ++ VF K+R K+ W +++ G A +
Sbjct: 192 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 251
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M E ++P+ LSACT G ++ GR+ + + V
Sbjct: 252 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K G +A + + + + + ++W A++ G + + +IA V ++
Sbjct: 312 TA-LIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKIAFALVGQM 365
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 38 SPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P +T+ L + + L L G ++H +++ + ++ ++L+ +YAKCG L R+
Sbjct: 67 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 126
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF ++ + W ++I G EA+ + + P+ T + VL+AC
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA--- 183
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQ 207
R + G ++ E G VDL K G + A E+ + +
Sbjct: 184 -------RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 236
Query: 208 PNAVIWGALLGG 219
+AV WGA++GG
Sbjct: 237 -DAVAWGAMVGG 247
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPAR+ +SW+ M+ Y Q REAL F M+ G+ PD + VL+ACA LG L+ G
Sbjct: 303 MPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG 362
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ I V++G+ALVDMYAKCG + ++ VF ++EKN+ W ++I+GLA+H
Sbjct: 363 KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMH 422
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M V+P+ + FI L ACTH GLV++GR F SM Y I P++EH
Sbjct: 423 GRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEH 482
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL++ GLL +A E++ +P+A+IWGAL+ GC+ H+N+E+A V + LE
Sbjct: 483 YGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELE 542
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ SG LL N+YA R A +IR M+E G++K PG S +E++ ++QF D S
Sbjct: 543 PDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDK-TPGCSTVEIKGVIHQFIVGDLS 601
Query: 301 HPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
HP +EI S ++D +++L YVP+ + +L
Sbjct: 602 HPFIEEILSKWDEIDSRIRLEEGYVPDKKEVL 633
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
L +++ +D + L+ YA+ G + + +F ++ +N W++++ G G
Sbjct: 266 LVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGR 325
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEH 180
EAL +F RM + V P+ + VL+AC G++E+G+ GY +I V
Sbjct: 326 EALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGK-----WVHGYLKANNIRITVFL 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G ++ A+E+ + K + N + W ++ G +H
Sbjct: 381 GTALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMIKGLAMH 422
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 211/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W M+ Y+ N REALD F M+ G+ PD +A LSAC LGALDLG
Sbjct: 233 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ V F + +G+AL+DMYAKCGS + +VF ++R+K++ WN++I GL +
Sbjct: 293 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 352
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A + +M V+ N TFI +L +CTH GL+++GRR F +MT Y I+P +EH
Sbjct: 353 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 412
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS+AGLL++A +LI NAVI GALLGGCK+HRN E+A + +L+ LE
Sbjct: 413 YGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE 472
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+Y+ RW + K+R+ MKE G+EK P SW+E E KV++F DKS
Sbjct: 473 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEK-VPACSWVEFEGKVHEFRVGDKS 531
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD+IY L +L ++K Y P E ++
Sbjct: 532 HPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 562
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +SWT +IT Y REA+ +G+ PD T VL+ACA + L G
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 191
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Q G V++ +A VD+Y KCG + ++ VF K+R+K+ W +++ G A +
Sbjct: 192 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 251
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M E V P+ LSACT G ++ GR+ + + V
Sbjct: 252 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +A + + + + + ++W A++ G
Sbjct: 312 TA-LIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMILG 348
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 38 SPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P +T L + + L L G ++H +++ + ++ ++L+ +YA+CG L R+
Sbjct: 67 NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 126
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF ++ + W ++I G EA+ + + P+ T + VL+AC
Sbjct: 127 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA--- 183
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQ 207
R + G ++ E G VDL K G + A E+ +
Sbjct: 184 -------RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMR-D 235
Query: 208 PNAVIWGALLGG 219
+AV WGA++GG
Sbjct: 236 KDAVAWGAMVGG 247
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W M+ Y+ N REALD F M+ G+ PD +A LSAC LGALDLG
Sbjct: 688 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 747
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ V F + +G+AL+DMYAKCGS + +VF ++R+K++ WN++I GL +
Sbjct: 748 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 807
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +M V+ N TFI +L +CTH GL+++GRR F +MT Y I+P +EH
Sbjct: 808 GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 867
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGLL++A +L+ NAVI GALLGGCK+HRN E+A + +L++LE
Sbjct: 868 YGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLE 927
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+Y+ RW + K+R+ MK G+EK P SW+E E KV++F DKS
Sbjct: 928 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK-VPACSWVEFEGKVHEFRVGDKS 986
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD+IY L +L ++K Y P E ++
Sbjct: 987 HPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 1017
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 2/236 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + WT +IT Y REA+ +G+ PD T VL+ACA + L G
Sbjct: 587 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 646
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Q G V++ +A VD+Y KCG + ++ VF K+R K+ W +++ G A +
Sbjct: 647 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 706
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M E ++P+ LSACT G ++ GR+ + + V
Sbjct: 707 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 766
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K G +A + + + + + ++W A++ G + + +IA V ++
Sbjct: 767 TA-LIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKIAFALVGQM 820
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 38 SPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P +T+ L + + L L G ++H +++ + ++ ++L+ +YAKCG L R+
Sbjct: 522 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 581
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF ++ + W ++I G EA+ + + P+ T + VL+AC
Sbjct: 582 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA--- 638
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQ 207
R + G ++ E G VDL K G + A E+ + +
Sbjct: 639 -------RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 691
Query: 208 PNAVIWGALLGG 219
+AV WGA++GG
Sbjct: 692 -DAVAWGAMVGG 702
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 218/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW MI YSQ+ EAL F +M+ G ++ + ++ LS CA + AL+LG
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ G++ ++G+AL+ MY KCGS++ + +F ++ K++ WN++I G + H
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF AL F+ M E ++P+ T ++VLSAC+H GLV++GR+ F +MT Y + P +H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLEDA L+++ F+P+A IWG LLG ++H N E+A A +++ +E
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW +V K+RV M++ G+ K+ PG SWIE++ K + F+ D+
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV-KKVPGYSWIEIQNKTHTFSVGDEF 667
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP DEI++ L +LD ++K A YV + +L
Sbjct: 668 HPEKDEIFAFLEELDLRMKKAGYVSKTSVVL 698
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 28/237 (11%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+ +WT M++ Y QN+ EA + F++M ++V+ +L+ +++ +
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAK 332
Query: 62 EIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
E+ FD+ +V + ++ YA+CG + + +F K+ +++ W ++I G
Sbjct: 333 EL--------FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGY 384
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+ G + EAL +F +M E N +F S LS C +E G++ + G T
Sbjct: 385 SQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-- 442
Query: 178 VEHYGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
GC V + K G +E+A +L + + + V W ++ G H E+A
Sbjct: 443 ----GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVA 494
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI Y +N+ +A + F M D + T+LS A G +D
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDA 176
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + M D+ +AL+ Y + ++ + ++F L WN ++ G
Sbjct: 177 RSV-FDRMPEKNDVSW---NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA FD M +V V++ ++++ +G ++E R+ F S +V
Sbjct: 233 KKIVEARQFFDSMNVRDV----VSWNTIITGYAQSGKIDEARQLF-----DESPVQDVFT 283
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ MV + ++E+A EL + N V W A+L G +E+A EL +
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMP-ERNEVSWNAMLAGYVQGERMEMA----KELFDVM 338
Query: 241 P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
P N ++ YA+ + +E + M KR P SW M
Sbjct: 339 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-----KRDP-VSWAAM 380
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 43/247 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD-- 58
MP RD+ SW TM++ Y+QN +A F+ M + V+ +LSA ++
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEA 207
Query: 59 ------------------LG---REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLD 93
LG ++ + + FD DV + ++ YA+ G +D
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F + +++F W +++ G + EA +FD+M E N V++ ++L+
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYV 323
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI-RSSKFQPNAVI 212
+E + F M C V + M+ ++ G + +A L + K P V
Sbjct: 324 QGERMEMAKELFDVMPC-----RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP--VS 376
Query: 213 WGALLGG 219
W A++ G
Sbjct: 377 WAAMIAG 383
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 57/261 (21%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI W I+ Y + + EAL F M V+ ++S G +L R++
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELARKL- 117
Query: 65 LYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD D+ + ++ Y + +L ++ +F + E+++ WN+++ G A +
Sbjct: 118 -------FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA--------------------------CTH 154
G +A ++FDRM E N V++ ++LSA C
Sbjct: 171 GCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 226
Query: 155 AGLVE-----EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
G V+ E R+ F SM +V + ++ +++G +++A +L S Q +
Sbjct: 227 GGFVKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-D 280
Query: 210 AVIWGALLGGCKLHRNLEIAH 230
W A++ G +R +E A
Sbjct: 281 VFTWTAMVSGYIQNRMVEEAR 301
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 227/332 (68%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +D++SW +MI Y+QN +A + F+ M K G ++VT++T+L ACAH GAL +
Sbjct: 253 MAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV 312
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H V+++G+ +V + ++++DMY KCG + + F ++EKN+ W ++I G +
Sbjct: 313 GMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGM 372
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HGFA EAL +F +MI+ V+PN +TFISVL+AC+HAG +EEG R F +M+ Y++ P VE
Sbjct: 373 HGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVE 432
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG +++A LI+S K + + V+WG+LL C++H+++E+A I+ EL L
Sbjct: 433 HYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKL 492
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N GY LL N+YA+ RW +V ++R+ +K+ G+ K PG S +E++ +V+ F DK
Sbjct: 493 DPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKP-PGYSLVELKGRVHVFLVGDK 551
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY L +L +L+ A YVP + ++L
Sbjct: 552 EHPQHEKIYKYLEELSVKLQEAGYVPNMASVL 583
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 149/327 (45%), Gaps = 50/327 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW ++I ++ E+L AF+ M+ I P++ T + +C+ L L+ G++ H
Sbjct: 46 DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ GF+ D+++ SAL+DMY+KCG L + ++F ++ +N+ W S+I G + AH
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165
Query: 125 EALAMFDRMIYENVEPNG---------VTFISVLSACT-----------HAGLVEEGRRR 164
EAL +F ++E E NG V ISVLSAC+ H ++ G +
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDK 225
Query: 165 FLSM---------TCG-YSIT---------PEVEHYGCMVDLLSKAGLLEDALE----LI 201
+ + CG S++ +V + M+ + ++ GL DA E ++
Sbjct: 226 VMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGML 285
Query: 202 RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-PNNSGYCTLLLNMYAEVSRW 260
++ + N V LL C L + ++++ + NN T +++MY + +
Sbjct: 286 KAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQA 345
Query: 261 AEVTKIRVAMKELGIEKRCPGSSWIEM 287
MKE + SW M
Sbjct: 346 EMARNAFDGMKEKNVR------SWTAM 366
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 18/236 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM---------KNSGISPDQVTMATVLSAC 51
+P R+I++WT++IT Y QN EAL F E + G S D V M +VLSAC
Sbjct: 143 IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202
Query: 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111
+ + + +H +++G D + + + L+D YAKCG + S VF + EK++ WN
Sbjct: 203 SRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWN 262
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEG---RRRFLS 167
S+I A +G + +A +F M+ + N VT ++L AC H G + G + +
Sbjct: 263 SMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIK 322
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
M GY V ++D+ K G E A K + N W A++ G +H
Sbjct: 323 M--GY--VNNVIMATSIIDMYCKCGQAEMARNAFDGMK-EKNVRSWTAMIAGYGMH 373
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W M+ Y+ N REALD F M+ G+ PD +A LSAC LGALDLG
Sbjct: 712 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 771
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ V F + +G+AL+DMYAKCGS + +VF ++R+K++ WN++I GL +
Sbjct: 772 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMT 831
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +M V+ N TFI +L +CTH GL+++GRR F +MT Y I+P +EH
Sbjct: 832 GHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 891
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGLL++A +L+ NAVI GALLGGCK+HRN E+A + +L++LE
Sbjct: 892 YGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLE 951
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+Y+ RW + K+R+ MK G+EK P SW+E E KV++F DKS
Sbjct: 952 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK-VPACSWVEFEGKVHEFRVGDKS 1010
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD+IY L +L ++K Y P E ++
Sbjct: 1011 HPLSDQIYKKLDELGLEMKTMGYEPTTEVVM 1041
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 2/236 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + WT +IT Y REA+ +G+ PD T VL+ACA + L G
Sbjct: 611 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 670
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Q G V++ +A VD+Y KCG + ++ VF K+R K+ W +++ G A +
Sbjct: 671 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 730
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M E ++P+ LSACT G ++ GR+ + + V
Sbjct: 731 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 790
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K G +A + + + + + ++W A++ G + + +IA V ++
Sbjct: 791 TA-LIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMILGLGMTGHEKIAFALVGQM 844
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 38 SPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P +T+ L + + L L G ++H +++ + ++ ++L+ +YAKCG L R+
Sbjct: 546 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 605
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF ++ + W ++I G EA+ + + P+ T + VL+AC
Sbjct: 606 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA--- 662
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQ 207
R + G ++ E G VDL K G + A E+ + +
Sbjct: 663 -------RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 715
Query: 208 PNAVIWGALLGG 219
+AV WGA++GG
Sbjct: 716 -DAVAWGAMVGG 726
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 222/331 (67%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++D+++WT MI Y+ + E+L F+ M+ G+ PD+V M TV++ACA LGA+
Sbjct: 162 MLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRA 220
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + Y+++ GF +DV +G+A++DMYAKCGS++ + VF +++EKN+ W+++I H
Sbjct: 221 RFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYH 280
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F M+ + PN VTF+S+L AC+HAGL+EEG R F SM +++ P+V+H
Sbjct: 281 GRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKH 340
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L++AL LI + + + +W ALLG C++H +E+A A N L+ L+
Sbjct: 341 YTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQ 400
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G+ LL N+YA+ +W +V K R M + + K+ PG +WIE++ K YQF+ D+S
Sbjct: 401 PQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKL-KKIPGWTWIEVDNKTYQFSVGDRS 459
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L L ++L++A YVP+ + +L
Sbjct: 460 HPQSKEIYEMLMSLIKKLEMAGYVPDTDFVL 490
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 15/257 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD +W+ M+ +++ F E+ G++PD T+ V+ C L +G
Sbjct: 61 LTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIG 120
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V++ G D ++ ++LVDMYAKC ++ + +F ++ K+L W +I G
Sbjct: 121 RVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMI-GAYAD 179
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS---MTCGYSITPE 177
A+E+L +FDRM E V P+ V ++V++AC G + R RF + + G+S+ +
Sbjct: 180 CNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMH--RARFANDYIVRNGFSL--D 235
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN----LEIAHIAV 233
V M+D+ +K G +E A E+ K + N + W A++ H +++ H+ +
Sbjct: 236 VILGTAMIDMYAKCGSVESAREVFDRMK-EKNVISWSAMIAAYGYHGRGKDAIDLFHMML 294
Query: 234 NELMILEPNNSGYCTLL 250
+ ++ PN + +LL
Sbjct: 295 SCAIL--PNRVTFVSLL 309
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V+ G D+ I + L+ YA+ ++D + +F L ++ W+ ++ G A
Sbjct: 20 RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A F ++ V P+ T V+ C ++ G R + + + +H
Sbjct: 80 GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIG-RVIHDVVLKHGLLS--DH 136
Query: 181 YGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ C +VD+ +K ++EDA L + V W ++G
Sbjct: 137 FVCASLVDMYAKCIVVEDAQRLF-ERMLSKDLVTWTVMIGA 176
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 213/333 (63%), Gaps = 5/333 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W+ MI+ Y+++ Q EAL FNEM+ I PDQ+TM +V+SACA++GAL
Sbjct: 309 MVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y + GF + I +AL+DMYAKCG+L ++ VF + KN+ W+S+I A+H
Sbjct: 369 KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+A+F RM +N+EPNGVTFI VL AC+HAGLVEEG++ F SM + I+P+ EH
Sbjct: 429 GDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREH 488
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +A L A+ELI + F PN +IWG+L+ C+ H +E+ A L+ LE
Sbjct: 489 YGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELE 548
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI--EKRCPGSSWIEMERKVYQFAASD 298
P++ G +L N+YA+ RW +V +R MK G+ EK C S IE+ +V+ F +D
Sbjct: 549 PDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKAC---SRIEVNNEVHVFMMAD 605
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ H SDEIY L + QLKL Y P +L
Sbjct: 606 RYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGIL 638
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 140/285 (49%), Gaps = 39/285 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W MI YSQN + L + EMK SG PD + + TVLSACAH G L G
Sbjct: 177 MSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG 236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSL---------------------------- 92
+ IH ++ GF + +I ++LV+MYA CG++
Sbjct: 237 KAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKL 296
Query: 93 ---DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+ +F ++ EK+L CW+++I G A EAL +F+ M + P+ +T +SV+
Sbjct: 297 GMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVI 356
Query: 150 SACTHAG-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
SAC + G LV+ + G+ T + + ++D+ +K G L A E+ + +
Sbjct: 357 SACANVGALVQAKWIHTYADKNGFGRTLPINN--ALIDMYAKCGNLVKAREVFENMP-RK 413
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
N + W +++ +H + + A IA+ M +EPN + +L
Sbjct: 414 NVISWSSMINAFAMHGDADSA-IALFHRMKEQNIEPNGVTFIGVL 457
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 16 YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF-DI 74
+S+ L + ++ +G D+ + +L A + L AL+LG EIH + GF
Sbjct: 90 FSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHA 149
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D +I SAL+ MYA CG + + +F K+ +++ WN +I+G + + L +++ M
Sbjct: 150 DPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMK 209
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR 162
EP+ + +VLSAC HAG + G+
Sbjct: 210 TSGTEPDAIILCTVLSACAHAGNLSYGK 237
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 144/328 (43%), Positives = 211/328 (64%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+I SW +I Y+ N F E L +F M S + P+ T+ TVLSACA LGALDL
Sbjct: 290 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 349
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y G +VY+G+AL+DMYAKCG ++ ++ VF + K+L WN++I GLA+
Sbjct: 350 GKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAM 409
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
H +AL +F +M +P+G+TFI +L ACTH GLVE+G F SM Y I P++E
Sbjct: 410 HSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIE 469
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+L++AG LE A+ +R + + VIW LLG C++++N+E+A +A+ L+ L
Sbjct: 470 HYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL 529
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N +L N+Y + RW +V +++VAM++ G K+ PG S IE+ V +F + D+
Sbjct: 530 EPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGF-KKLPGCSLIEVNDAVVEFYSLDE 588
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
HP +EIY L L + L+ YVP+L
Sbjct: 589 RHPQIEEIYGVLRGLVKVLRSFGYVPDL 616
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 15/254 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +I W +M Y+Q++ +RE + F +MK I P+ T VL +C + AL G
Sbjct: 96 IPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG 155
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++++ GF + ++G+ L+DMY+ G++ + +F ++ E+N+ W S+I G +
Sbjct: 156 EQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS 215
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A +FD +V V + ++S G + E R+ F M +V
Sbjct: 216 ADLVSARRLFDLAPERDV----VLWNIMVSGYIEGGDMVEARKLFHEMP-----NRDVMF 266
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ ++ + G +E ALE + + N W AL+GG H L + + M+ E
Sbjct: 267 WNTVLKGYATNGNVE-ALEGLFEEMPERNIFSWNALIGGYA-HNGLFFEVLGSFKRMLSE 324
Query: 241 ----PNNSGYCTLL 250
PN++ T+L
Sbjct: 325 SDVPPNDATLVTVL 338
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 61 REIHLYVMQI---GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+++H QI GF + YI LV + A + + +F ++ + N+ WNS+ G
Sbjct: 52 KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY 111
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR--FLSMTCGYSIT 175
A E + +F +M ++ PN TF VL +C + EG + FL + CG+
Sbjct: 112 AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFL-IKCGFRGN 170
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
P V ++D+ S G + DA ++ F+ N V W +++ G L +L ++
Sbjct: 171 PFVGT--TLIDMYSAGGTVGDAYKIF-CEMFERNVVAWTSMINGYILSADL----VSARR 223
Query: 236 LMILEP 241
L L P
Sbjct: 224 LFDLAP 229
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW MI ++++ + EA D F +M+ G PD + ++L+ACA GAL+
Sbjct: 291 MKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWV 350
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH + + G ++DV +G+ALV MY+K GS+D + +VF +++ +N+ WN++I GLA H
Sbjct: 351 KKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQH 410
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM V+P+ VTF++VLSAC+HAGLV+EGR ++L+MT Y I P+V H
Sbjct: 411 GLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSH 470
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVDLL +AG L +A I + P+ WGALLG C+ + N+E+ + E + L+
Sbjct: 471 CNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLD 530
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+ LL N+YAE +W V+ +R M+E GI K PG SWIE++ K++ F +D S
Sbjct: 531 PKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKE-PGRSWIEVDNKIHDFLVADSS 589
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI S K+ E++K Y+P+ +L
Sbjct: 590 HPECKEINESKDKVIEKIKAEGYIPDTRLVL 620
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 2/219 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DIISWT MI Y+Q+ +EA +M+ G P+ +T ++L+ACA GAL + +H
Sbjct: 194 DIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVH 253
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + G ++DV +G+ALV MYAK GS+D + +VF +++ +++ WN +I A HG H
Sbjct: 254 RHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGH 313
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA +F +M E +P+ + F+S+L+AC AG + E ++ + +V +
Sbjct: 314 EAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL-EWVKKIHRHALDSGLEVDVRVGTAL 372
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V + SK+G ++DA + K + N V W A++ G H
Sbjct: 373 VHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQH 410
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 113/217 (52%), Gaps = 4/217 (1%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
SW MI Y ++K +A+ F EM + G+ P+ T +L ACA L AL G+E+H +
Sbjct: 96 SWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACI 155
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
G + DV +G+AL+ MY KCGS++ + +F L ++ W +I A G EA
Sbjct: 156 RHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAY 215
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVD 186
+ +M E +PN +T++S+L+AC G ++ +R ++ G + V +V
Sbjct: 216 RLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG--TALVQ 273
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +K+G ++DA + K + + V W ++G H
Sbjct: 274 MYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAFAEH 309
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 43/223 (19%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
G+ D VL C L +++H +++ + + ++ + L+ +Y +CG L +
Sbjct: 23 GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-- 153
VF L +K+ WN++I G H A +A+ +F M +E V+PN T++ +L AC
Sbjct: 83 RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142
Query: 154 --------------HAGL-------------------VEEGRRRFLSMTCGYSITPEVEH 180
H GL + E RR F ++ + ++
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL-----MNHDIIS 197
Query: 181 YGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
+ M+ +++G ++A L + F+PNA+ + ++L C
Sbjct: 198 WTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC 240
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPAR+ +SW+ M+ Y Q REAL F M+ G+ PD + VL+ACA LG L+ G
Sbjct: 303 MPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG 362
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ I V++G+ALVDMYAKCG + ++ VF ++EKN+ W ++I+GLA+H
Sbjct: 363 KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMH 422
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M V+P+ + FI L ACTH GLV++GR F SM Y I P++EH
Sbjct: 423 GRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEH 482
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL++ GLL +A E++ +P+A+IWGAL+ GC+ H+N+E+A V + LE
Sbjct: 483 YGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELE 542
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ SG LL N+YA R A +IR M+E G++K PG S +E++ ++QF D S
Sbjct: 543 PDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDK-TPGCSTVEIKGVIHQFIVGDLS 601
Query: 301 HPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
HP +EI S ++D +++L YVP+ + +L
Sbjct: 602 HPFIEEILSKWDEIDSRIRLEEGYVPDKKEVL 633
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
L +++ +D + L+ YA+ G + + +F ++ +N W++++ G G
Sbjct: 266 LVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGR 325
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEH 180
EAL +F RM + V P+ + VL+AC G++E+G+ GY +I V
Sbjct: 326 EALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGK-----WVHGYLKANNIRITVFL 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G ++ A+E+ + K + N + W ++ G +H
Sbjct: 381 GTALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMIKGLAMH 422
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ++W M+ Y+ N REALD F M+ G PD T+ LSAC LGALDLG
Sbjct: 103 MKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLG 162
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ V + +G+AL+DMYAKCGS + +VF ++ E+++ WN++I GL +
Sbjct: 163 RQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMT 222
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +M V+ N TFI +L +CTH GLV +GR+ F +MT Y I+P +EH
Sbjct: 223 GHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEH 282
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL S+AGLLE+A +LI NAV+WGALLGGCK+HRN ++A A+ +L+ LE
Sbjct: 283 YGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLE 342
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+Y+ RW + K+R+ MK GIEK P SSW+E++ KV++F D S
Sbjct: 343 PWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEK-VPASSWVELDGKVHKFYVGDDS 401
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD+IY+ L +L ++K Y P E ++
Sbjct: 402 HPLSDKIYAKLDELGMEMKAMGYEPTTEVVM 432
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 3/237 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +SWT +I Y EA+ SG+ PD T VL+ACA + L+ G
Sbjct: 1 MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ Q G V++ +A +D+Y KCG ++++ VF +++ ++ W +++ G A
Sbjct: 61 EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G EAL +F M E +P+ T + LSACT G ++ GR+ + M +
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQA-VGMVHWDEVLGNPV 179
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K G +A ++ + + ++W A++ G + + +IA V ++
Sbjct: 180 LGTALIDMYAKCGSTSEAW-MVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQM 235
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 211/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW +I Y+QN + EA++ EMK G S ++ T LSACA + AL+LG
Sbjct: 338 MPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELG 397
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V++ G++ +G+ALV MY KCG +D + VF ++ K++ WN+++ G A H
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARH 457
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +AL +F+ MI V+P+ +T + VLSAC+H GL + G F SM Y ITP +H
Sbjct: 458 GFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKH 517
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG LE+A LIR+ F+P+A WGALLG ++H N+E+ A + +E
Sbjct: 518 YACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKME 577
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YA RW +V+K+R+ M+++G++K PG SW+E++ K++ F D
Sbjct: 578 PHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQK-TPGYSWVEVQNKIHTFTVGDCF 636
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP IY+ L +LD ++K YV + +L
Sbjct: 637 HPEKGRIYAFLEELDLKMKHEGYVSSTKLVL 667
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 24/229 (10%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT M+ Y Q+ EA F+EM +++ +++ A +D+GR
Sbjct: 246 PVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK----REMSYNVMIAGYAQYKRMDMGR 301
Query: 62 EIHLYVMQIGFDIDVYIGS--ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
E+ ++ F IGS ++ Y + G L ++ +F + +++ W +II G A
Sbjct: 302 EL---FEEMPFP---NIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQ 355
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G EA+ M M + N TF LSAC +E G++ G + E
Sbjct: 356 NGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQ-----VHGQVVRTGYE 410
Query: 180 HYGC-----MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC +V + K G +++A ++ + + + + V W +L G H
Sbjct: 411 K-GCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARH 457
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 125/302 (41%), Gaps = 46/302 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ SW M+T Y++N++ R+A F+ M D V+ +LS G +D
Sbjct: 90 MPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK----DVVSWNAMLSGYVRSGHVDEA 145
Query: 61 REI-----HLYVMQIGFDIDVYIGSA----------------------LVDMYAKCGSLD 93
R++ H + + Y+ S L+ Y K L
Sbjct: 146 RDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLG 205
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ ++L WN++I G A G +A +F+ +V T+ +++ A
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYV 261
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G+++E RR F M ++ Y M+ ++ ++ EL F PN W
Sbjct: 262 QDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSW 315
Query: 214 GALLGG-CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
++ G C+ N ++A A N ++ +S ++ YA+ + E + V MK
Sbjct: 316 NIMISGYCQ---NGDLAQ-ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKR 371
Query: 273 LG 274
G
Sbjct: 372 DG 373
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 49/219 (22%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +S+ MI+ Y +N +F A D F++M +
Sbjct: 59 MPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK------------------------- 93
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
D++ + ++ YA+ L + ++F + EK++ WN+++ G
Sbjct: 94 --------------DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRS 139
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +FDRM ++ N +++ +L+A +G +EE RR F S + E+
Sbjct: 140 GHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFESKS-----DWELIS 190
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
C++ K +L DA +L + + + W ++ G
Sbjct: 191 CNCLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMISG 228
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 140/333 (42%), Positives = 215/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW+ MI CY++N + EAL F EM + SP+ VTM +VL ACA L AL+
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
GR IH Y+++ G D + + SALV MY +CG LD VF ++ ++++ WNS+I
Sbjct: 303 QGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYG 362
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG+ +A+ +F+ M+ P VTF+SVL AC+H GLVEEG+R F SM + I P+V
Sbjct: 363 VHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQV 422
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L++A ++++ + +P +WG+LLG C++H N+E+A A L
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W EV +++ ++ G++K PG W+E+ RK+Y F + D
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK-LPGRCWMEVRRKMYSFVSMD 541
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P ++I++ L KL E +K Y+P+ + +L
Sbjct: 542 EFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVL 574
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 3 ARDIISWTTMITCYSQNKQFR---------EALDAFNEMKNSGISPDQVTMATVLSACA- 52
AR + T T Y N FR E L + +M G+ D+ T VL AC
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190
Query: 53 ---HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
L G+EIH ++ + G++ VYI + LVDMYA+ G +D + VF + +N+
Sbjct: 191 SECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVS 250
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGR----- 162
W+++I A +G A EAL F M+ E + PN VT +SVL AC +E+GR
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGY 310
Query: 163 --RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
RR L SI P + +V + + G L D + + + V W +L+
Sbjct: 311 ILRRGLD-----SILPVIS---ALVTMYGRCGKL-DVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 221 KLH 223
+H
Sbjct: 362 GVH 364
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 20/220 (9%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
IS +I + + ++AL ++ SP Q T ++ C H +L G +H +
Sbjct: 47 ISNNQLIQSLCKEGKLKQALRVLSQES----SPSQQTYELLILCCGHRSSLSDGLRVHRH 102
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D D ++ + L+ MY+ GS+D + VF K R++ ++ WN++ L + G E
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---- 182
L ++ +M VE + T+ VL AC + + +T G I + G
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTAD------HLTKGKEIHAHLTRRGYNSH 216
Query: 183 -----CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+VD+ ++ G ++ A + + N V W A++
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVR-NVVSWSAMI 255
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 214/326 (65%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W +MI+ +SQN + +EALD F +M GI + VT+++ LSACA L A+ G
Sbjct: 505 MSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYG 564
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH +++ D++ SAL+DMYAKCG+++ +L VF + +KN WNSII H
Sbjct: 565 KEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAH 624
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E+++ RM E +P+ VTF++++SAC HAGLVEEG + F MT Y I P +EH
Sbjct: 625 GLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEH 684
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDL S++G L+ A++ I F+P+A IWGALL C++HRN+E+A IA EL L+
Sbjct: 685 FACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLD 744
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY L+ N+ A RW V+K+R MK+ I K PG SW+++ + F ASDKS
Sbjct: 745 PGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILK-IPGYSWVDVNNSSHLFVASDKS 803
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S++IY+SL L ++L+ YVP
Sbjct: 804 HPESEDIYTSLKALLQELREEGYVPR 829
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A D++ +T+I+ Y N +AL F + I P+ VT+A+VL ACA + AL LG+E
Sbjct: 406 AIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQE 465
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH YV++ ++ Y+ SAL+DMYAKCG LD S +F K+ K+ WNS+I + +G
Sbjct: 466 IHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGE 525
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F +M E ++ N VT S LSAC + G+ + G I ++
Sbjct: 526 PQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKG-PIKADIFAES 584
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLH 223
++D+ +K G +E AL R +F P N V W +++ H
Sbjct: 585 ALIDMYAKCGNMELAL---RVFEFMPDKNEVSWNSIISAYGAH 624
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 88/153 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D+++W MI+ QN EAL F +M SG PD VT+ ++L A L L G
Sbjct: 303 LPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQG 362
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ +D ++ SALVD+Y KC + + ++ R ++ +++I G ++
Sbjct: 363 KEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLN 422
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
G + +AL MF ++ + ++PN VT SVL AC
Sbjct: 423 GMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD + W M+ Y + A+ F M+ SG P+ T+A LS CA L G
Sbjct: 202 MPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G + +V + + L+ MYAKC LD + +F L +L WN +I G +
Sbjct: 262 VQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQN 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G EAL +F M+ P+ VT +S+L A T +++G+
Sbjct: 322 GLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGK 363
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
SPD T+ V+ +CA LGA+ LGR +H G DVY+GSAL+ MY+ G L +
Sbjct: 138 SPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARD 197
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-THAG 156
F + ++ WN +++G G A+ +F M EPN T LS C A
Sbjct: 198 AFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEAD 257
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
L+ + L++ CG + EV ++ + +K L+DA L + + V W +
Sbjct: 258 LLSGVQLHSLAVKCG--LEQEVAVANTLLSMYAKCRCLDDAWRLFELLP-RDDLVTWNGM 314
Query: 217 LGGC 220
+ GC
Sbjct: 315 ISGC 318
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 218/332 (65%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP +DI++W +I+ Y QN + EAL F+E++ I +Q+T+ + LSACA +GAL+L
Sbjct: 326 MPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALEL 385
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH Y+ + G ++ Y+ SAL+ MY+KCG L+++ VF + ++++F W+++I GLA+
Sbjct: 386 GRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAM 445
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ MF +M NV+PNGVTF +V AC+H GLV+E F M Y I PE +
Sbjct: 446 HGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDK 505
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L ++G LE A++ I + P+ +WGALLG CK+H NL +A +A L+ L
Sbjct: 506 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLEL 565
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G LL N+YA+ +W V+++R M+ G++K PG S IE++ +++F + D
Sbjct: 566 EPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKE-PGCSSIEIDGMIHEFLSGDN 624
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP S+++Y L ++ E+LK Y PE+ +L
Sbjct: 625 AHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVL 656
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 12/242 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
+P + +W T+I Y+ ++ AF +M S P++ T ++ A A + +L
Sbjct: 91 IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG+ +H ++ DV++ ++L+ Y CG LD + VF ++EK++ WNS+I G
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SI 174
G +AL +F +M E+V+ + VT + VLSAC +E GRR C Y +
Sbjct: 211 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR-----VCSYIEENRV 265
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
+ M+D+ +K G +EDA L + + + N V W +L G + + E A +N
Sbjct: 266 NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLN 324
Query: 235 EL 236
+
Sbjct: 325 AM 326
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 34/252 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI + Q +AL+ F +M++ + VTM VLSACA + L+ GR +
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN----------------- 106
Y+ + ++++ + +A++DMY KCGS++ + +F + EK+
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 316
Query: 107 --------------LFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSA 151
+ WN++I +G +EAL +F + + +N++ N +T +S LSA
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
C G +E G R S I ++ + SK G LE A E+ S + + +
Sbjct: 377 CAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVF 434
Query: 212 IWGALLGGCKLH 223
+W A++GG +H
Sbjct: 435 VWSAMIGGLAMH 446
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 215/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW MI Y+Q Q REAL+ F M+ G+ ++V+M +V++AC HLGALD G
Sbjct: 202 MPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H Y+ + + V +G+ALVDMY KCG++DR+L VF+++ EKN++ W++ I GLA++
Sbjct: 262 KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMN 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ + L +F M +E + PN +TFISVL C+ G V+EGR F SM + I P +EH
Sbjct: 322 GYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEH 381
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG LE+AL I + +P+A WGALL C++++N+E+ A +L+ +E
Sbjct: 382 YGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVE 441
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G L N+YA+ W V+ +R +MK GI K PG S +E+ +V++F + DKS
Sbjct: 442 GKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISK-LPGCSVMEVNGEVHEFFSGDKS 500
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP+ D I + ++ ++LKLA YV ++L
Sbjct: 501 HPSYDVIETMWGEISKRLKLAGYVASTNSVL 531
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 36/247 (14%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ + +MI YS++ ++ +N++ N +SPD T ++ CA A + G +
Sbjct: 74 LFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAV 132
Query: 64 HLYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSL 92
H +++ GF+ D ++ S L+ MYA KCG +
Sbjct: 133 HGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDI 192
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ +F + +++ WN++I G A G + EAL +F M + V+ N V+ ISV++AC
Sbjct: 193 GFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTAC 252
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
TH G +++G+ + I V +VD+ K G ++ AL++ + N
Sbjct: 253 THLGALDQGKWAHAYIE-KNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMN-EKNVYT 310
Query: 213 WGALLGG 219
W +GG
Sbjct: 311 WSTAIGG 317
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/322 (45%), Positives = 218/322 (67%), Gaps = 3/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP+R ++SWTTMI+ YSQN + +AL+ F +M K+ + P++VT+A+V SACA LGAL++
Sbjct: 102 MPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEV 161
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
G I Y G ++Y+ + L++MYA+CG +D + VF ++ + +NL WNS++ GLA
Sbjct: 162 GERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLA 221
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG ++EAL ++D+M+ E +EP+ VTF+ ++ ACTH GLV +G + F SM +SI P++
Sbjct: 222 VHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKL 281
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AG L++A +L++S +P++VIWG LLG C H N+E A IA L
Sbjct: 282 EHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQ 341
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G +L N+YA RW V K+R MK I K G S IE E ++++F D
Sbjct: 342 VEPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITK-AAGYSVIEGEGEIHKFIVED 400
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
KSHP EIY+ L+++ ++KL
Sbjct: 401 KSHPRHYEIYALLNEISTKMKL 422
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
G P+++T + ACA +L G+ IH + ++ GFD DVY +ALVDMYAK G L +
Sbjct: 5 GCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLA 64
Query: 96 LLVFFKLREKNLFCWNSI-------------------------------IEGLAVHGFAH 124
VF ++ +++ WNS+ I G + +G
Sbjct: 65 RQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYT 124
Query: 125 EALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL MF +M + V PN VT SV SAC G +E G R S + +
Sbjct: 125 KALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVG-ERIESYARDNGLMKNLYVSNT 183
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEP 241
++++ ++ G ++ A + + N W +++ G +H A ++++ +EP
Sbjct: 184 LLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEP 243
Query: 242 NNSGYCTLLL 251
++ + L+L
Sbjct: 244 DDVTFVGLIL 253
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W +I+ YSQ+ EAL F EM+ GI PD + +VL ACAH AL+ G
Sbjct: 383 MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y ++ GF+ +V +G+ LVD+YAKCG+++ + +F ++ E+++ W ++I +H
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIH 502
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +ALA+F +M + + + F ++L+AC+HAGLV++G + F M Y + P++EH
Sbjct: 503 GHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEH 562
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++A +I++ +P+A +WGALLG C++H N+E+ A L L+
Sbjct: 563 YACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELD 622
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+GY LL N+YAE RW +V K+R MKE G++K+ PG S + + R V F D++
Sbjct: 623 PDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQ-PGCSVVAVHRDVQTFLVGDRT 681
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY+ L L EQ++ A YVP L
Sbjct: 682 HPQSEQIYAMLEILYEQMRKAGYVPNTNLAL 712
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 137/233 (58%), Gaps = 10/233 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW +I YS N Q EAL FN M+ GI P+ +TM +VL ACAHL AL+ G
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQG 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y ++ GF+ + +G+ALV+MYAKCG+++ + +F ++ +KN+ WN+II G + H
Sbjct: 342 QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQH 401
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G HEALA+F M + ++P+ +SVL AC H +E+G++ GY+I E
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ-----IHGYTIRSGFES 456
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+VD+ +K G + A +L Q + V W ++ +H + E A
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ-DVVSWTTMILAYGIHGHGEDA 508
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +I YSQN Q EAL F+EM+ +GI P+ T+ +V+ CAHL AL+ G
Sbjct: 181 MPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG 240
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y ++ G + DV + + LV+MYAKCG+++ + +F ++ +++ WN+II G +++
Sbjct: 241 KQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLN 300
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
HEALA F+RM ++PN +T +SVL AC H +E+G++ GY+I E
Sbjct: 301 SQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ-----IHGYAIRSGFES 355
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V++ +K G + A +L + N V W A++ G H
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 134/245 (54%), Gaps = 12/245 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ + W I Y +N + +AL + +M+ +GI+PD++ +V+ AC L GR++H
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF+ DV +G+AL MY KCGSL+ + VF ++ ++++ WN+II G + +G +
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH---- 180
EALA+F M ++PN T +SV+ C H +E+G++ + C Y+I +E
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ----IHC-YAIRSGIESDVLV 258
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V++ +K G + A +L + + W A++GG L+ A N + +
Sbjct: 259 VNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317
Query: 239 LEPNN 243
++PN+
Sbjct: 318 IKPNS 322
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
N W I G +GF ++AL ++ +M + P+ + F+SV+ AC ++ GR+
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V + + +K G LE+A ++ + + V W A++ G
Sbjct: 142 VHEDII-ARGFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAIIAG 195
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 145/330 (43%), Positives = 212/330 (64%), Gaps = 1/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
PA D++++T+MIT YSQ EAL + M++ I PD +++ +ACA+L A + G+
Sbjct: 452 PAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGK 511
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH++V++ G DV+ G++LV+MYAKCGS+D + +F ++ + + W+++I GLA HG
Sbjct: 512 QIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHG 571
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F +M+ + PN +T +SVLSAC HAGLV E RR F M + ITP EHY
Sbjct: 572 HGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHY 631
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVD+L + G L++A+ L++ FQ +A +WGALLG ++H+N+E+ A L+ LEP
Sbjct: 632 ACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEP 691
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
SG LL N+YA W V K+R +MK + K+ PG SWIE++ KVY F D+SH
Sbjct: 692 EKSGTHILLANIYASTGMWDNVAKVRRSMKN-SLVKKEPGMSWIELKDKVYTFIVGDRSH 750
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P S EIY L L E+L A YVP +E L
Sbjct: 751 PRSKEIYVKLDDLRERLTSAGYVPMIETDL 780
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 42/255 (16%)
Query: 5 DIISWTTMITCYSQNKQFREALDAF----------------------------------- 29
D++SW+ +I+ Y QN + EAL +
Sbjct: 112 DLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIH 171
Query: 30 -----NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
EM ++GISP++ +++TVL+ACA L + G ++H Y++++G+D D + +AL+D
Sbjct: 172 RVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLD 231
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MYAK G + ++ VF+++ + ++ WN++I G +H AL + +M V P+ T
Sbjct: 232 MYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFT 291
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
S L AC GLV+ G R+ S + P+ ++D+ SK GLL+DA ++
Sbjct: 292 LSSALKACAAIGLVKLG-RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDA-RMVFDL 349
Query: 205 KFQPNAVIWGALLGG 219
+ ++W +++ G
Sbjct: 350 MPXKDVIVWNSIISG 364
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 42/294 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P DI+SW +I +++ AL +M + ++P T+++ L ACA +G + LG
Sbjct: 249 IPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG 308
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +M++ + D ++G L+DMY+KCG L + +VF + K++ WNSII G +
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNC 368
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA---GLVEEGRRRFLSMTCGYSITPE 177
G+ EA+++F M E +E N T ++L + + G E+ +S+ GY
Sbjct: 369 GYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHT--ISIKSGYQYDGY 426
Query: 178 VEH-----------------------------YGCMVDLLSKAGLLEDALEL---IRSSK 205
V + Y M+ S+ GL E+AL++ ++
Sbjct: 427 VANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRD 486
Query: 206 FQPNAVIWGALLGGC---KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
+P+A I+ +L C + + H+ V + +L +G L+NMYA+
Sbjct: 487 IKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAG--NSLVNMYAK 538
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 117/224 (52%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+I W ++I+ YS EA+ F M G+ +Q T++T+L + A A
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G+ D Y+ ++L+D Y KC L+ + VF ++L + S+I + +
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVE 179
G EAL M+ RM +++P+ F S+ +AC + E+G++ + + CG + +V
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCG--LLSDVF 527
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V++ +K G ++DA + ++ V W A++GG H
Sbjct: 528 AGNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQH 570
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKL----REKNLFCWNSIIEGLAVH-----GFAHE 125
D+ SAL+ Y + G + +LL ++++ + N F ++S+++G ++ G
Sbjct: 112 DLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIH 171
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG---RRRFLSMTCGYSITPEVEHYG 182
+A+ MI + PN + +VL+AC AGL +E + + GY P +
Sbjct: 172 RVALVTEMISTGISPNEFSLSTVLNAC--AGLEDENYGMKVHGYLIKLGYDSDPFSAN-- 227
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++D+ +K+G E A+ + +P+ V W A++ GC LH ++A
Sbjct: 228 ALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLA 273
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP +DI++W +I+ Y QN + EAL F+E++ + +Q+T+ + LSACA +GAL+L
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH Y+ + G ++ ++ SAL+ MY+KCG L++S VF + ++++F W+++I GLA+
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +EA+ MF +M NV+PNGVTF +V AC+H GLV+E F M Y I PE +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L ++G LE A++ I + P+ +WGALLG CK+H NL +A +A L+ L
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G LL N+YA++ +W V+++R M+ G++K PG S IE++ +++F + D
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE-PGCSSIEIDGMIHEFLSGDN 622
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP S+++Y L ++ E+LK Y PE+ +L
Sbjct: 623 AHPMSEKVYGKLHEVMEKLKSNGYEPEISQVL 654
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 34/252 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI + Q +AL+ F +M++ + VTM VLSACA + L+ GR++
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN----------------- 106
Y+ + ++++ + +A++DMY KCGS++ + +F + EK+
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314
Query: 107 --------------LFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSA 151
+ WN++I +G +EAL +F + + +N++ N +T +S LSA
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
C G +E G R S + I ++ + SK G LE + E+ S + + +
Sbjct: 375 CAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVF 432
Query: 212 IWGALLGGCKLH 223
+W A++GG +H
Sbjct: 433 VWSAMIGGLAMH 444
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 11/241 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P + +W T+I Y+ ++ AF +M S P++ T ++ A A + +L L
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H ++ DV++ ++L+ Y CG LD + VF ++EK++ WNS+I G
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SIT 175
G +AL +F +M E+V+ + VT + VLSAC +E GR+ C Y +
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ-----VCSYIEENRVN 264
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+ M+D+ +K G +EDA L + + + N V W +L G + + E A +N
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNS 323
Query: 236 L 236
+
Sbjct: 324 M 324
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 213/326 (65%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA+++++WT M++ +Q EA F EM ++ I D + + ++L+ACA G+L LG
Sbjct: 283 MPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALG 342
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH +V Q + +AL+DM+ KCG ++R+ +F ++ EK+L WN II G A+
Sbjct: 343 KRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAM 402
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M + P+ VT I+VLSACTH GLVEEGRR F +M Y I P++E
Sbjct: 403 HGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIE 462
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL + GL+++A+++I+ ++PN VIWG+LL C+LH+N+E A +AVNEL L
Sbjct: 463 HYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNL 522
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+++G +L N+YAE +W+++ K RV MK G +K GSSWIE+ ++F D+
Sbjct: 523 QPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTA-GSSWIELNEAFHEFTVGDR 581
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
HP SD+I + +L +K VP
Sbjct: 582 KHPESDQISDMIDRLSSHVKFVGCVP 607
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW T + + + A F+EM D V+ T+L A G +
Sbjct: 190 MTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTMLDGYAKAGEAE-- 243
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ L+ G ++ + S +V Y K G ++ + ++F K+ KNL W ++ A
Sbjct: 244 KAFELFQRMPGRNVVSW--STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQK 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M+ +E + + +S+L+AC +G + G+R + ++
Sbjct: 302 GLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVR-QRKLSRSTLV 360
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A + + + + V W ++GG +H
Sbjct: 361 CNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMH 403
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 73/288 (25%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
R H +V+++G D ++G+AL+D Y+K
Sbjct: 149 RGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQ 208
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G +D + +F ++ EK+ WN++++G A G A +A +F RM NV V++ +V+
Sbjct: 209 GEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNV----VSWSTVV 264
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA------------ 197
SA G +E R F M +T + MV ++ GL+E+A
Sbjct: 265 SAYCKKGDMEMARVIFDKMPAKNLVT-----WTIMVSACAQKGLVEEAGRLFTEMMDAAI 319
Query: 198 -LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
L++I G+L G ++HR++ ++ + L+ C L++M+ +
Sbjct: 320 ELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLV---------CNALMDMFCK 370
Query: 257 ---VSRWAEVTKIRVAMKEL--------GIEKRCPGSSWIEMERKVYQ 293
V+R + + K+L G PG +E+ ++ Q
Sbjct: 371 CGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 418
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 214/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
MPAR++ SW +I Y +N F+EAL+ F M G+ P+ T+ VLSAC+ LG L++
Sbjct: 113 MPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEI 172
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y IG+ ++++G+AL+DMYAKCG ++++L VF L K++ WN+II LA+
Sbjct: 173 GKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAM 232
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
H A +AL++F+ M P+GVTF+ +LSACTH GLV G F SM Y I P++E
Sbjct: 233 HXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIE 292
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGL+ A++++R +P+ VIW ALLG C+ ++N+E+A +A+ L+ L
Sbjct: 293 HYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIEL 352
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPNN G +L N+Y ++ R +V +++VAM++ G K PG S I V +F + D+
Sbjct: 353 EPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRK-VPGCSVIGCNDSVVEFYSLDE 411
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
HP +D IY +L L L+ YVP L
Sbjct: 412 RHPETDSIYRALQGLTILLRSHGYVPNL 439
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 17/227 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M +++ +WT ++ + A F+ ++P D V ++S LG +
Sbjct: 20 MRDKNVFAWTAVVAAHVACHDMVSARRLFD------LAPQCDVVLWNVIVSGYIELGDMV 73
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
RE+ + D DV + ++ YA G ++ + VF ++ +N++ WN +I G
Sbjct: 74 AARELFDRMP----DCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYV 129
Query: 119 VHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITP 176
+G EAL F RM+ + V PN T ++VLSAC+ G +E G+ + + GY
Sbjct: 130 RNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNL 189
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V + ++D+ +K G++E AL++ + + + W ++ +H
Sbjct: 190 FVGN--ALIDMYAKCGVIEKALDVFDGLDVK-DIITWNTIINSLAMH 233
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW MI YSQ+ EAL F M+ G ++ + ++ LS CA + AL+LG
Sbjct: 364 MPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELG 423
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ G++ ++G+AL+ MY KCGS++ + +F ++ K++ WN++I G + H
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL F+ M E ++P+ T ++VLSAC+H GLV++GR+ F +MT Y + P +H
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLE+A L+++ F+P+A IWG LLG ++H N E+A A +++ +E
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 603
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW +V K+RV M++ G+ K+ PG SWIE++ K + F+ D+
Sbjct: 604 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV-KKVPGYSWIEIQNKTHTFSVGDEF 662
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP DEI++ L LD ++K A YV + +L
Sbjct: 663 HPEKDEIFAFLEDLDLRMKKAGYVSKTSVVL 693
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 28/231 (12%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D+ +WT M++ Y QN+ EA + F+ M ++V+ +L+ +++ +
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAK 327
Query: 62 EIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
E+ FD+ +V + ++ YA+CG + + +F K+ +++ W ++I G
Sbjct: 328 EL--------FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGY 379
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+ G ++EAL +F M E N +F S LS C +E G++ + G T
Sbjct: 380 SQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-- 437
Query: 178 VEHYGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +E+A +L + + + V W ++ G H
Sbjct: 438 ----GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRH 483
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 120/288 (41%), Gaps = 29/288 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI Y +N+ +A + F M D + T+LS A G +D
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPER----DVCSWNTILSGYAQNGCVDDA 171
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + M D+ +AL+ Y + L+ + ++F L WN ++ G
Sbjct: 172 RRV-FDRMPEKNDVSW---NALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKK 227
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA FD M +V V++ ++++ G ++E R+ F S +V
Sbjct: 228 KKIVEARQFFDSMKVRDV----VSWNTIITGYAQNGEIDEARQLFDE-----SPVHDVFT 278
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ MV + ++E+A EL + N V W A+L G +E+A EL +
Sbjct: 279 WTAMVSGYIQNRMVEEARELFDRMP-ERNEVSWNAMLAGYVQGERVEMA----KELFDVM 333
Query: 241 P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
P N ++ YA+ + +E + M KR P SW M
Sbjct: 334 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-----KRDP-VSWAAM 375
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 26/219 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI W I+ Y + + EAL F M V+ ++S G +L R +
Sbjct: 58 DIKEWNVAISSYMRTGRCSEALRVFKRMPRW----SSVSYNAMISGYLRNGEFELARML- 112
Query: 65 LYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD D+ + ++ Y + +L ++ +F ++ E+++ WN+I+ G A +
Sbjct: 113 -------FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQN 165
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A +FDRM E N V++ ++LSA +EE F S ++
Sbjct: 166 GCVDDARRVFDRM----PEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVS----- 216
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ C++ K + +A + S K + + V W ++ G
Sbjct: 217 WNCLLGGFVKKKKIVEARQFFDSMKVR-DVVSWNTIITG 254
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 213/326 (65%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA+++++WT M++ +Q EA F EM ++ I D + + ++L+ACA G+L LG
Sbjct: 355 MPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALG 414
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH +V Q + +AL+DM+ KCG ++R+ +F ++ EK+L WN II G A+
Sbjct: 415 KRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAM 474
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M + P+ VT I+VLSACTH GLVEEGRR F +M Y I P++E
Sbjct: 475 HGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIE 534
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL + GL+++A+++I+ ++PN VIWG+LL C+LH+N+E A +AVNEL L
Sbjct: 535 HYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNL 594
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+++G +L N+YAE +W+++ K RV MK G +K GSSWIE+ ++F D+
Sbjct: 595 QPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTA-GSSWIELNEAFHEFTVGDR 653
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
HP SD+I + +L +K VP
Sbjct: 654 KHPESDQISDMIDRLSSHVKFVGCVP 679
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW T + + + A F+EM D V+ T+L A G +
Sbjct: 262 MTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTMLDGYAKAGEAE-- 315
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ L+ G ++ + S +V Y K G ++ + ++F K+ KNL W ++ A
Sbjct: 316 KAFELFQRMPGRNVVSW--STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQK 373
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M+ +E + + +S+L+AC +G + G+R + ++
Sbjct: 374 GLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVR-QRKLSRSTLV 432
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A + + + + V W ++GG +H
Sbjct: 433 CNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMH 475
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 73/288 (25%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
R H +V+++G D ++G+AL+D Y+K
Sbjct: 221 RGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQ 280
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G +D + +F ++ EK+ WN++++G A G A +A +F RM NV V++ +V+
Sbjct: 281 GEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNV----VSWSTVV 336
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA------------ 197
SA G +E R F M +T + MV ++ GL+E+A
Sbjct: 337 SAYCKKGDMEMARVIFDKMPAKNLVT-----WTIMVSACAQKGLVEEAGRLFTEMMDAAI 391
Query: 198 -LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
L++I G+L G ++HR++ ++ + L+ C L++M+ +
Sbjct: 392 ELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLV---------CNALMDMFCK 442
Query: 257 ---VSRWAEVTKIRVAMKEL--------GIEKRCPGSSWIEMERKVYQ 293
V+R + + K+L G PG +E+ ++ Q
Sbjct: 443 CGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 490
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 148/323 (45%), Positives = 214/323 (66%), Gaps = 1/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++ WTTMI+ Y+++ +EAL F EM SGI PD VTM +V+SAC +LG LD + +
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV 369
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y G + + I +AL++MYAKCG LD + VF K+ +N+ W+S+I A+HG A
Sbjct: 370 HRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEA 429
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
++L++F +M ENVEPN VTF+ VL C+H+GLVEEG++ F SMT Y+ITP++EHYGC
Sbjct: 430 SDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGC 489
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDL +A LL +ALE+I S PN VIWG+L+ C++H LE+ +A ++ LEP++
Sbjct: 490 MVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDH 549
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ N+YA RW V IR M++ + K G S I++ K ++F DK H
Sbjct: 550 DGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKE-KGLSRIDLNGKSHEFLIGDKRHKQ 608
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
S+EIY+ L ++ +LKLA YVP+
Sbjct: 609 SNEIYTKLYEVVSKLKLAGYVPD 631
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 125/256 (48%), Gaps = 37/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W TMI Y + EA F EMK+S + PD++ + ++SAC G +
Sbjct: 175 MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 234
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF------------ 108
R I+ ++++ +D ++ +ALV MYA G +D ++ F K+ +NLF
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294
Query: 109 -------------------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
CW ++I A EAL +F+ M ++P+ VT +SV+
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354
Query: 150 SACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
SAC + G +++ + R+ + S+ P +++ ++++ +K G L+ A ++ +
Sbjct: 355 SACVNLGTLDKAKWVHRYTHLNGLESVLP-IDN--ALINMYAKCGGLDAARDVFEKMPTR 411
Query: 208 PNAVIWGALLGGCKLH 223
N V W +++ +H
Sbjct: 412 -NVVSWSSMINAFAMH 426
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 126/265 (47%), Gaps = 5/265 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + I + +++ S++ + R + + +++ G D+++ +L A + + AL G
Sbjct: 75 PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E+H + +I D ++ + L+DMYA CG ++ + VF ++ ++++ WN++IE G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EA +F+ M NV P+ + +++SAC G + R + + +
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY-DFLIENDVRMDTHLL 253
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
+V + + AG ++ A+E R + N + A++ G L+ A + ++ E
Sbjct: 254 TALVTMYAGAGCMDMAMEFFRKMSVR-NLFVSTAMVSGYSKAGRLDDARVIFDQ---TEM 309
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKI 266
+ T +++ YAE E ++
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRV 334
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW++MI ++ + + ++L F +MK + P++VT VL C+H G ++ G
Sbjct: 408 MPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEG 467
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGL 117
++I M ++I I +VD++ + L +L V + N+ W S++
Sbjct: 468 KKI-FASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSAC 526
Query: 118 AVHG 121
VHG
Sbjct: 527 RVHG 530
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 211/321 (65%), Gaps = 1/321 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW TMI Y+ + EAL F++M+ G+ P + T+ ++LSACAHLGALD G
Sbjct: 258 MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 317
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ +++ +G+ALVDMYAKCG + + VF + K++ WN+II G+A+H
Sbjct: 318 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 377
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M VEPN +TF+++LSAC+HAG+V+EG++ M+ Y I P+VEH
Sbjct: 378 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 437
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DLL++AG LE+A+ELI + +PN GALLGGC++H N E+ + L+ L+
Sbjct: 438 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 497
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA +W + K+R MK GI K PG S IE++ V++F A D S
Sbjct: 498 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK-VPGVSVIELKGMVHRFVAGDWS 556
Query: 301 HPASDEIYSSLSKLDEQLKLA 321
HP S++IY L+++ +LK A
Sbjct: 557 HPESNKIYEKLNEIHTRLKSA 577
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I S +K EAL ++ M SG+ PD +T V+ AC G +H +V+
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH-------- 120
+ GF+ D YI S+L+ +YA L + +F +++ WN++I+G H
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 253
Query: 121 -----------------------GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
G +EALA+FD+M V+P T +S+LSAC H G
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+++G + I +VD+ +K G + A ++ + + + + + W ++
Sbjct: 314 LDKGLHLHTYIN-DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK-DVLAWNTII 371
Query: 218 GGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
G +H N++ A E+ +EPN+ + +L
Sbjct: 372 AGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 406
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW +I+ Y+QN + EAL+ F EMK G S ++ T + LS CA + AL+LG
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V++ GF+ ++G+AL+ MY KCGS D + VF + EK++ WN++I G A H
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +AL +F+ M V+P+ +T + VLSAC+H+GL++ G F SM Y++ P +H
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH 530
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG LE+A L+R+ F P A WGALLG ++H N E+ A + +E
Sbjct: 531 YTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKME 590
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW +V K+R M+E G++K G SW+E++ K++ F+ D
Sbjct: 591 PQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQK-VTGYSWVEVQNKIHTFSVGDCF 649
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D IY+ L +LD +++ YV + +L
Sbjct: 650 HPEKDRIYAFLEELDLKMRREGYVSSTKLVL 680
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW M++ Y+QN EA + FN+M + + ++ +L+A H G L
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEA 189
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R L+ Q +++ + + L+ Y K L + +F ++ +++ WN++I G A
Sbjct: 190 RR--LFESQSNWELISW--NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQV 245
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G +A +F+ +V T+ +++S G+V+E R+ F M I+
Sbjct: 246 GDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPVKNEIS 296
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 26/240 (10%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI++W I+ + +N AL FN M V+ ++S L R++
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSMPRR----SSVSYNAMISGYLRNAKFSLARDL- 99
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD D++ + ++ Y + L + +F + +K++ WN+++ G A +
Sbjct: 100 -------FDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN 152
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA +F++M + N +++ +L+A H G ++E RR F S + E+
Sbjct: 153 GFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQS-----NWELIS 203
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C++ K +L DA +L + + + W ++ G +L A NE I +
Sbjct: 204 WNCLMGGYVKRNMLGDARQLFDRMPVR-DVISWNTMISGYAQVGDLSQAKRLFNESPIRD 262
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 47/257 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
MP RD+ISW TMI+ Y+Q +A FNE SP D T ++S G +D
Sbjct: 227 MPVRDVISWNTMISGYAQVGDLSQAKRLFNE------SPIRDVFTWTAMVSGYVQNGMVD 280
Query: 59 LGR----------EIHLYVMQIGFDI-----------------DVYIGSALVDMYAKCGS 91
R EI M G+ ++ + ++ Y + G
Sbjct: 281 EARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGG 340
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+ ++ +F + +++ W +II G A +G EAL MF M + N TF LS
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALST 400
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV-----DLLSKAGLLEDALELIRSSKF 206
C +E G++ G + E GC V + K G ++A ++ +
Sbjct: 401 CADIAALELGKQ-----VHGQVVKAGFE-TGCFVGNALLGMYFKCGSTDEANDVFEGIE- 453
Query: 207 QPNAVIWGALLGGCKLH 223
+ + V W ++ G H
Sbjct: 454 EKDVVSWNTMIAGYARH 470
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 26/233 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW M+T Y +N++ EA F+ M D V+ +LS A G +D
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKK----DVVSWNAMLSGYAQNGFVDEA 158
Query: 61 REIHLYVMQIGFDIDVYIGS----ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+ F+ + S L+ Y G L + +F L WN ++ G
Sbjct: 159 REV--------FNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGG 210
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
+A +FDRM +V +++ +++S G + + +R F S
Sbjct: 211 YVKRNMLGDARQLFDRMPVRDV----ISWNTMISGYAQVGDLSQAKRLF-----NESPIR 261
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+V + MV + G++++A + + N + + A+L G ++ + IA
Sbjct: 262 DVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-NEISYNAMLAGYVQYKKMVIA 313
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 213/319 (66%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW +MI+ +Q QF+E+L F +M+ G+ PD VT+ VL++CA+LG L+LG
Sbjct: 266 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + D +IG+ALVDMYAKCGS+D++ VF + K+++ + ++I GLA+H
Sbjct: 326 KWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M +EP+ VTF+ VL+AC+H GLVEEGR+ F M+ Y++ P++EH
Sbjct: 386 GQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A E IR+ +P+A + GALLG CK+H +E+ + ++ +E
Sbjct: 446 YGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIE 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G L+ N+Y+ +RW + K+R MKE +EK PG S IE++ +++F DKS
Sbjct: 506 PRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEK-TPGCSSIELDGVIHEFQKGDKS 564
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP EIY L ++ LK
Sbjct: 565 HPKIKEIYKLLDEIMSHLK 583
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 36/161 (22%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SWTTMI Y + RE + + ++NS +
Sbjct: 202 PQRDLVSWTTMIQGYVKMGFAREGVGLY-IIRNSNV------------------------ 236
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++DV++G+ALVDMY KCG + + VF ++ KN+ WNS+I GLA G
Sbjct: 237 -----------NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKG 285
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
E+L MF +M V+P+ VT ++VL++C + G++E G+
Sbjct: 286 QFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGK 326
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
+ N E L + +M + GI PD T+ VL ACA A+ G E+H +++G DV
Sbjct: 116 TSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDV 175
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
Y+ + L+ MYA C + + VF +++L W ++I+G GFA E + ++ I
Sbjct: 176 YVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLY---IIR 232
Query: 137 NVEPNGVTFI--SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
N N F+ +++ G R+ F M V + M+ L++ G
Sbjct: 233 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP-----VKNVVSWNSMISGLAQKGQF 287
Query: 195 EDALELIRSSK---FQPNAVIWGALLGGC 220
+++L + R + +P+ V A+L C
Sbjct: 288 KESLYMFRKMQRLGVKPDDVTLVAVLNSC 316
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQI--GFDIDVYIGSALVDMYAKCGSLDR- 94
+P +++ + L C + L ++IH +++ D + I + L + A+ +D
Sbjct: 34 NPHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 90
Query: 95 -SLLVFFKLREKNLFCWNSIIEGLAV-HGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+L + +LR NL +N+II GLA + + E L ++ +M+ + + P+ T VL AC
Sbjct: 91 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 150
Query: 153 THAGLVEEG 161
+ V EG
Sbjct: 151 AESRAVREG 159
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 227/332 (68%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
M ++++SW+TMI+ Y++N+++ +A++ F +M++ G++P+ VT+ +VLSACAHLGALDL
Sbjct: 219 MMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 278
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH ++ + ++ +++G+AL DMYAKCG + + VF ++ E+++ W+ II GLA+
Sbjct: 279 GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAM 338
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G+A+EA F MI + +EPN ++F+ +L+ACTHAGLV++G F M Y ITP++E
Sbjct: 339 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 398
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC+VDLLS+AG L+ A LI S QPN ++WGALLGGC+++++ E V ++ L
Sbjct: 399 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 458
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N+SG L N+YA + R + R+ M++ + PG SWIE+ VY+F D
Sbjct: 459 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRD-NKSMKTPGCSWIEINNSVYEFFMGDS 517
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S IYS + +L ++K+A Y P+ + ++
Sbjct: 518 SHPQSLRIYSMIRELKWKMKVAGYKPKTDLVI 549
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 159/359 (44%), Gaps = 61/359 (16%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNE--MKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+I ++ ++ +SQ+ + + FN + + +PD+ T +VL ACA L + G++
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGS------------------------------- 91
+H +V + G + ++++ ++LVD+Y K G
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLS 150
+D++ +VF + EKNL W+++I G A + +A+ +F +M +E + PN VT +SVLS
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLS 268
Query: 151 ACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC H G ++ G+ RF+ I + + D+ +K G + +A + +
Sbjct: 269 ACAHLGALDLGKWIHRFIRRN---KIEVGLFLGNALADMYAKCGCVLEAKGVFHEMH-ER 324
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKI 266
+ + W ++ G ++ A E++ LEPN+ + LL
Sbjct: 325 DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLL---------------- 368
Query: 267 RVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
A G+ + G + +M +VY + + ++ S +LD+ L + +P
Sbjct: 369 -TACTHAGLVDK--GLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMP 424
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/328 (43%), Positives = 210/328 (64%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+I SW +I Y+ N F E L +F M S + P+ T+ TVLSACA LGALDL
Sbjct: 353 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 412
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y G +VY+G+AL+DMYAKCG ++ ++ VF + K+L WN++I GLA+
Sbjct: 413 GKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAM 472
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
H +AL +F +M +P+G+TFI +L ACTH GLVE+G F SM Y I P++E
Sbjct: 473 HSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIE 532
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+L++AG LE A +R + + VIW LLG C++++N+E+A +A+ L+ L
Sbjct: 533 HYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL 592
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N +L N+Y + RW +V +++VAM++ G K+ PG S IE+ V +F + D+
Sbjct: 593 EPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGF-KKLPGCSLIEVNDAVVEFYSLDE 651
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
HP +EIY L L + L+ YVP+L
Sbjct: 652 RHPQIEEIYGVLRGLVKVLRSFGYVPDL 679
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 15/254 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +I W +M Y+Q++ +RE + F +MK I P+ T VL +C + AL G
Sbjct: 159 IPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG 218
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++++ GF + ++G+ L+DMY+ G++ + +F ++ E+N+ W S+I G +
Sbjct: 219 EQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS 278
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A +FD +V V + ++S G + E R+ F M +V
Sbjct: 279 ADLVSARRLFDLAPERDV----VLWNIMVSGYIEGGDMVEARKLFXEMP-----NRDVMF 329
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ ++ + G +E ALE + + N W AL+GG H L + + M+ E
Sbjct: 330 WNTVLKGYATNGNVE-ALEGLFEEMPERNIFSWNALIGGYA-HNGLFFEVLGSFKRMLSE 387
Query: 241 ----PNNSGYCTLL 250
PN++ T+L
Sbjct: 388 SDVPPNDATLVTVL 401
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 61 REIHLYVMQI---GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+++H QI GF + YI LV + A + + +F ++ + N+ WNS+ G
Sbjct: 115 KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY 174
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR--FLSMTCGYSIT 175
A E + +F +M ++ PN TF VL +C + EG + FL + CG+
Sbjct: 175 AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFL-IKCGFRGN 233
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
P V ++D+ S G + DA ++ F+ N V W +++ G L +L ++
Sbjct: 234 PFVGT--TLIDMYSAGGTVGDAYKIF-CEMFERNVVAWTSMINGYILSADL----VSARR 286
Query: 236 LMILEP 241
L L P
Sbjct: 287 LFDLAP 292
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 213/319 (66%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW +MI+ +Q QF+E+L F +M+ G+ PD VT+ VL++CA+LG L+LG
Sbjct: 288 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG 347
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + D +IG+ALVDMYAKCGS+D++ VF + K+++ + ++I GLA+H
Sbjct: 348 KWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMH 407
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M +EP+ VTF+ VL+AC+H GLVEEGR+ F M+ Y++ P++EH
Sbjct: 408 GQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEH 467
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A E IR+ +P+A + GALLG CK+H +E+ + ++ +E
Sbjct: 468 YGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIE 527
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G L+ N+Y+ +RW + K+R MKE +EK PG S IE++ +++F DKS
Sbjct: 528 PRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEK-TPGCSSIELDGVIHEFQKGDKS 586
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP EIY L ++ LK
Sbjct: 587 HPKIKEIYKLLDEIMSHLK 605
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 1/162 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SWTTMI Y + RE + F EM + D +T+ VLS+CA LG L LGR
Sbjct: 187 PQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGR 246
Query: 62 EIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H Y+++ ++DV++G+ALVDMY KCG + + VF ++ KN+ WNS+I GLA
Sbjct: 247 KLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQK 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G E+L MF +M V+P+ VT ++VL++C + G++E G+
Sbjct: 307 GQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGK 348
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 1/203 (0%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
+ N E L + +M + GI PD T+ VL ACA A+ G E+H +++G DV
Sbjct: 101 TSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDV 160
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
Y+ + L+ MYA C + + VF +++L W ++I+G GFA E + +F M E
Sbjct: 161 YVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGE 220
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196
N++ +G+T + VLS+C G + GR+ + ++ +V +VD+ K G
Sbjct: 221 NLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANF 280
Query: 197 ALELIRSSKFQPNAVIWGALLGG 219
A ++ + + N V W +++ G
Sbjct: 281 ARKVFQEMPVK-NVVSWNSMISG 302
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQI--GFDIDVYIGSALVDMYAKCGSLDR- 94
+P +++ + L C + L ++IH +++ D + I + L + A+ +D
Sbjct: 19 NPHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 75
Query: 95 -SLLVFFKLREKNLFCWNSIIEGLAV-HGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+L + +LR NL +N+II GLA + + E L ++ +M+ + + P+ T VL AC
Sbjct: 76 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 135
Query: 153 THAGLVEEG 161
+ V EG
Sbjct: 136 AESRAVREG 144
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 214/332 (64%), Gaps = 5/332 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISW+ MI Y Q F EAL+ F++M+ I P + + +VLSACA+LGALD G
Sbjct: 262 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 321
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + +D +G++LVDMYAKCG +D + VF K+ K + WN++I GLA+H
Sbjct: 322 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMH 381
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M ++ PN +TF+ VL+AC H GLV++G F SM Y + P++EH
Sbjct: 382 GRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEH 438
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGLL +A +++ S +P +WGALLG C+ H N+E+ L+ LE
Sbjct: 439 YGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELE 498
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER-KVYQFAASDK 299
P NSG TLL N+YA+ RW EV ++R MKE GI K PG+S I++ R +V++F D
Sbjct: 499 PQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI-KTTPGTSIIDLGRGEVHKFIIGDG 557
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +IY L K+ E+L++ Y P+ +L
Sbjct: 558 SHPQVKDIYQMLDKVKERLQMEGYEPDPSQVL 589
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 14/221 (6%)
Query: 5 DIISWTTMI-TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ W MI C N+ F+ A+ + EM + P++ T VL AC+ G + G ++
Sbjct: 101 NVFLWNCMIKVCIENNEPFK-AILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQV 159
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAVHGF 122
H ++++ G D +I S+ + MYA G L + + K E + CWN++I+G G
Sbjct: 160 HAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGE 219
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +F+ M ++ IS S C G+VE R F M I+ +
Sbjct: 220 VEAARELFEGMPDRSMISTWNAMISGFSRC---GMVEVAREFFDEMKERDEIS-----WS 271
Query: 183 CMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
M+D + G +ALE+ ++ K +P + ++L C
Sbjct: 272 AMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 312
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG-----SLDRSLLVFFKLREKNLFCWNSIIE 115
++ H +++ G D YI +LV YA S + SL VF +R+ N+F WN +I+
Sbjct: 51 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
+ +A+ ++ M+ + PN T+ +VL AC+ AG+V EG + + + +
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLV-KHGLG 169
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + + G L +A ++ + +AV W A++ G
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 213
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 214/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW+ MI Y Q +F+E L F +M I P++ + LSACAHLGA++ G
Sbjct: 228 MPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG 287
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ I Y+ + + V +G+AL+DMY+KCGS++R+L VF K++EKN+ W+++I GLA++
Sbjct: 288 QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAIN 347
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F +M + V+PN VTFI +L+AC+H+ LV+EG F SMT Y + P H
Sbjct: 348 GQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHH 407
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDL +AG+L+ A +I+S F+PN+ IWGALL C++H + E+ L+ L+
Sbjct: 408 HCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELD 467
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN+ G LL N+YA RW V ++R M+E + K PG S+I++ +++F A D S
Sbjct: 468 PNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSK-TPGCSFIDLGDTIHEFVAGDSS 526
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY+ L ++ ++LK A Y P+ +L
Sbjct: 527 HPQLEMIYAKLGEMSQELKAAGYKPDTGQVL 557
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 38/249 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREI 63
DI T+I Y+ + +A+ ++EM S + PD T +L AC+ + +L LG I
Sbjct: 99 DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAI 158
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG------- 116
H +V ++G+ +V + + LV MYA CG ++ + LVF + E + WN +I G
Sbjct: 159 HSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVF 218
Query: 117 -------------------LAVHGFAHEA-----LAMFDRMIYENVEPNGVTFISVLSAC 152
+ ++G+ E+ L +F M+ E +EPN ++ LSAC
Sbjct: 219 KSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSAC 278
Query: 153 THAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
H G +E+G+ R++ ++ V ++D+ SK G +E ALE+ K + N
Sbjct: 279 AHLGAMEQGQWIERYMERK---NVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNV 334
Query: 211 VIWGALLGG 219
+ W A++ G
Sbjct: 335 LAWSAMING 343
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 17/221 (7%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREK 105
LS+C L L +IH + G D ++ S ++ A GS+ + +F+++R+
Sbjct: 42 LSSCKTLKDLT---QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP 98
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRR 164
++F N++I A +A+ + M +V P+ TF +L AC+ + G
Sbjct: 99 DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLG-EA 157
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG---CK 221
S + EV +V + + GL+E A L+ + + W ++GG C
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESA-GLVFDRTPECDGASWNIMIGGYLKCG 216
Query: 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262
+ ++ A+ + ++ ++++N Y + SR+ E
Sbjct: 217 VFKSARRMFEAMPDRDVVS------WSVMINGYVQESRFKE 251
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 212/324 (65%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW+ +I ++ Q EAL+ F M+ + + + VT+A+VLS CA L AL LGREIH
Sbjct: 1213 NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIH 1272
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V++ D ++ +G+ L++MY K GS LVF K+ K+L WN+++ G +HG
Sbjct: 1273 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 1332
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ FD+MI + EP+GVTF++VLSAC+HAGLV EGR F M + + P++EHY CM
Sbjct: 1333 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 1392
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL +AGLL++A ++++S +PNA +WGALL C++H+N E+A +++ L +
Sbjct: 1393 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 1452
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA RW + K+R++ K G+ K+ PG SWI++++KVY F+A + H
Sbjct: 1453 GSYMLLSNIYAASGRWEDSAKVRISAKTKGL-KKTPGQSWIQVKKKVYMFSAGNTQHAEL 1511
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
+E+Y L L Q+++ Y+P+++
Sbjct: 1512 EEVYRILKDLGLQMEVEGYIPDID 1535
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++WT++++ +++ Q E ++ F M+ GI +A VLS L A D G+ IH
Sbjct: 1073 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIH 1132
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ GF+ +++ ++L+ +Y K G+++ + ++F +++ KN+ WN++I A G+
Sbjct: 1133 GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCD 1192
Query: 125 EALAMFDRM----IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
EA A+F ++ Y V PN V++ +V+ G EE F M
Sbjct: 1193 EAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 87/152 (57%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W +++ + EAL+ + M+ G+S D T V+ ACA +G+ L R +H
Sbjct: 937 NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 996
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V+++GF ++++G+ L+ MY K G +D + VF ++ ++ WN+++ G A++ H
Sbjct: 997 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 1056
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
A MF M +EPN VT+ S+LS+ G
Sbjct: 1057 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCG 1088
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW TM+ Y + A+ F++M G PD VT VLSAC+H G + GRE+
Sbjct: 1313 KDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 1372
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+++ F ++ + + +VD+ + G L + V + E N W +++ +H
Sbjct: 1373 FDKMIK-EFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 1431
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 30/233 (12%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-------FKLREKNLFCWN 111
L ++IH ++ G ++ + +V +YA G + + VF F NL WN
Sbjct: 887 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF----SNLLLWN 942
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
SI+ HG+ EAL ++ RM V +G TF V+ AC G R+ G
Sbjct: 943 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALM-----GSRKLCRSVHG 997
Query: 172 YSITPEVE---HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ + + H G ++ + K G ++DA ++ + + V W ++ G L+ +
Sbjct: 998 HVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR-SCVSWNTMVSGYALNYD-- 1054
Query: 228 IAHIAVNELMI-----LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
H A + LEPN + T LL+ +A + E ++ M+ GI
Sbjct: 1055 -CHGASEMFRMMGSAGLEPNLVTW-TSLLSSHARCGQHVETMELFGRMRMRGI 1105
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 215/324 (66%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++S+T+MIT Y+Q Q EAL F EM++ + PD+ +++L+ACA+L A + G+++H
Sbjct: 498 DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH 557
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++++ GF +D++ G++LV+MYAKCGS+D + F +L E+ + W+++I GLA HG
Sbjct: 558 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 617
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+AL +F++M+ E V PN +T +SVL AC HAGLV E + F SM + P EHY CM
Sbjct: 618 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACM 677
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG + +A+EL+ F+ NA +WGALLG ++H+++E+ A L ILEP S
Sbjct: 678 IDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS 737
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA +W V ++R M++ ++K PG SWIE++ KVY F D+SH S
Sbjct: 738 GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKE-PGMSWIEVKDKVYTFLVGDRSHYRS 796
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
EIY+ L +L + + A YVP +E
Sbjct: 797 QEIYAKLDELSDLMDKAGYVPMVE 820
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 129/228 (56%), Gaps = 8/228 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW+ +I+ Y+QN AL AF+EM G+ ++ T ++VL AC+ + L +G+++H
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V+ GF+ DV++ + LV MYAKC S +F ++ E+N+ WN++ F
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCG 240
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS---MTCGYSITPEVEHY 181
EA+ +F M+ ++PN + S+++ACT GL + R + + + GY P +
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFSAN- 297
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+VD+ +K G L DA+ + K QP+ V W A++ GC LH + E A
Sbjct: 298 -ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQA 343
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 132/252 (52%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+I+W +I+ YSQ + EAL F EM GI +Q T++T+L + A L + +
Sbjct: 393 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 452
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF D+Y+ ++L+D Y KC ++ + +F + +L + S+I A +
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 512
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M ++P+ S+L+AC + E+G++ + + Y ++
Sbjct: 513 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFA 571
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V++ +K G ++DA S + V W A++GG H + A N+++
Sbjct: 572 GNSLVNMYAKCGSIDDAGRAF-SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG 630
Query: 239 LEPNNSGYCTLL 250
+ PN+ ++L
Sbjct: 631 VSPNHITLVSVL 642
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 29/219 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+++SW + +CY Q EA+ F EM SGI P++ +++++++AC L G
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y++++G+D D + +ALVDMYAK G L ++ VF K+++ ++ WN++I G +H
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL + +M + H+ L++ L ++ G
Sbjct: 338 EHHEQALELLGQMKRQ----------------LHSSLMKMDMESDLFVSVG--------- 372
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ SK LLEDA + + + + + W A++ G
Sbjct: 373 ---LVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIISG 407
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 140/318 (44%), Gaps = 56/318 (17%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA----HLGALDL- 59
D S ++ Y++ +A+ F ++K PD V+ V++ C H AL+L
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQ----PDIVSWNAVIAGCVLHEHHEQALELL 347
Query: 60 ---GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R++H +M++ + D+++ LVDMY+KC L+ + + F L EK+L WN+II G
Sbjct: 348 GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 407
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCG---- 171
+ + EAL++F M E + N T ++L + +V R+ LS+ G
Sbjct: 408 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSD 467
Query: 172 -YSITPEVEHYG------------------------CMVDLLSKAGLLEDALEL---IRS 203
Y + ++ YG M+ ++ G E+AL+L ++
Sbjct: 468 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527
Query: 204 SKFQPNAVIWGALLGGC------KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257
+ +P+ + +LL C + + L + + ++ + NS L+NMYA+
Sbjct: 528 MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS-----LVNMYAKC 582
Query: 258 SRWAEVTKIRVAMKELGI 275
+ + + E GI
Sbjct: 583 GSIDDAGRAFSELTERGI 600
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + +S++ Q L N + +P V+ + +LS C +L G
Sbjct: 19 LPFKPAPKLIQTVPQFSEDPQTTAIL---NLIDKGNFTPTSVSYSKLLSQCCTTKSLRPG 75
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH ++ + G D I + L+++Y+KC + + + E +L W+++I G A +
Sbjct: 76 LQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQN 135
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
G AL F M V+ N TF SVL AC+
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 212/325 (65%), Gaps = 1/325 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W TMI+ Y Q +F A+ F +M++ + P +VTM ++LSACAHLGALD+G IH Y
Sbjct: 99 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 158
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+ IDV +G+AL+DMY KCG+L+ ++ VF L KN+FCWNSII GL ++G EA
Sbjct: 159 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 218
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+A F M E ++P+GVTF+ +LS C+H+GL+ G+R F M Y + P VEHYGCMVD
Sbjct: 219 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 278
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246
LL +AG L++ALELIR+ +PN+++ G+LL C++H++ ++ +L+ L+P + G
Sbjct: 279 LLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGN 338
Query: 247 CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDE 306
L N+YA +SRW +V R M + G+ K PG S IE+ V++F A D SHP +
Sbjct: 339 YVFLSNLYASLSRWDDVNTCRKLMIKRGVHKT-PGCSSIEVNNIVHEFVAGDTSHPQFTQ 397
Query: 307 IYSSLSKLDEQLKLASYVPELEAML 331
I + L ++ ++LK +VP +L
Sbjct: 398 INAFLDEIAKELKGQGHVPNTANVL 422
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 14/233 (6%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
L ++ M + + P + + + +L +CA G LG H +M++GF+ D+ + + L+D
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74
Query: 86 YAKCGSLDRSLLVFFKLREK--NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
YAK G ++ + +F + E+ N WN++I G A++MF +M ENV+P V
Sbjct: 75 YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITP----EVEHYGCMVDLLSKAGLLEDALE 199
T +S+LSAC H G ++ G GY T +V ++D+ K G LE A++
Sbjct: 135 TMVSLLSACAHLGALDMGE-----WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAID 189
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGYCTLL 250
+ + N W +++ G ++ E IA V E ++P+ + +L
Sbjct: 190 VFHGLS-RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGIL 241
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++I W ++I N + EA+ AF M+ GI PD VT +LS C+H G L G+
Sbjct: 197 KNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRY 256
Query: 64 HLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAVH 120
++ + G + V +VD+ + G L +L + + K N S++ +H
Sbjct: 257 FSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIH 315
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 215/324 (66%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++S+T+MIT Y+Q Q EAL F EM++ + PD+ +++L+ACA+L A + G+++H
Sbjct: 525 DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH 584
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++++ GF +D++ G++LV+MYAKCGS+D + F +L E+ + W+++I GLA HG
Sbjct: 585 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 644
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+AL +F++M+ E V PN +T +SVL AC HAGLV E + F SM + P EHY CM
Sbjct: 645 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACM 704
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG + +A+EL+ F+ NA +WGALLG ++H+++E+ A L ILEP S
Sbjct: 705 IDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKS 764
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA +W V ++R M++ ++K PG SWIE++ KVY F D+SH S
Sbjct: 765 GTHVLLANIYASAGKWENVAEVRRLMRDSKVKKE-PGMSWIEVKDKVYTFLVGDRSHYRS 823
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
EIY+ L +L + + A YVP +E
Sbjct: 824 QEIYAKLDELSDLMDKAGYVPMVE 847
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 146/273 (53%), Gaps = 18/273 (6%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW+ +I+ Y+QN AL AF+EM G+ ++ T ++VL AC+ + L +G+++H
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V+ GF+ DV++ + LV MYAKC S +F ++ E+N+ WN++ F
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCG 240
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS---MTCGYSITPEVEHY 181
EA+ +F M+ ++PN + S+++ACT GL + R + + + GY P +
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFSAN- 297
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
+VD+ +K G L DA+ + K QP+ V W A++ GC LH + E A + ++
Sbjct: 298 -ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQM----- 350
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274
SG C + + + + A + +KELG
Sbjct: 351 KRSGICPNIFTLSSALKACA-----GMGLKELG 378
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+++SW + +CY Q EA+ F EM SGI P++ +++++++AC L G
Sbjct: 218 IPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y++++G+D D + +ALVDMYAK G L ++ VF K+++ ++ WN++I G +H
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL + +M + PN T S L AC GL E GR+ S+ + ++
Sbjct: 338 EHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLM-KMDMESDLFV 396
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ SK LLEDA + + + + + W A++ G
Sbjct: 397 SVGLVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIISG 434
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 129/245 (52%), Gaps = 4/245 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+I+W +I+ YSQ + EAL F EM GI +Q T++T+L + A L + +
Sbjct: 420 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 479
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF D+Y+ ++L+D Y KC ++ + +F + +L + S+I A +
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 539
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M ++P+ S+L+AC + E+G++ + + Y ++
Sbjct: 540 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFA 598
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V++ +K G ++DA S + V W A++GG H + A N+++
Sbjct: 599 GNSLVNMYAKCGSIDDAGRAF-SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG 657
Query: 239 LEPNN 243
+ PN+
Sbjct: 658 VSPNH 662
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 44/310 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+SW +I ++ +AL+ +MK SGI P+ T+++ L ACA +G +LGR++H
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH 382
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+M++ + D+++ LVDMY+KC L+ + + F L EK+L WN+II G + +
Sbjct: 383 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 442
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCG-----YSITPEV 178
EAL++F M E + N T ++L + +V R+ LS+ G Y + +
Sbjct: 443 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLI 502
Query: 179 EHYG------------------------CMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ YG M+ ++ G E+AL+L ++ + +P+
Sbjct: 503 DSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRF 562
Query: 212 IWGALLGGC------KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
+ +LL C + + L + + ++ + NS L+NMYA+ + +
Sbjct: 563 VCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS-----LVNMYAKCGSIDDAGR 617
Query: 266 IRVAMKELGI 275
+ E GI
Sbjct: 618 AFSELTERGI 627
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + +SQ+ Q L N + +P V+ + +LS C +L G
Sbjct: 19 LPFKPAPKLIQTVPQFSQDPQTTAIL---NLIDKGNFTPTSVSYSKLLSQCCTTKSLRPG 75
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH ++ + G D I + L+++Y+KC + + + + E +L W+++I G A +
Sbjct: 76 LQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQN 135
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
G AL F M V+ N TF SVL AC+
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/332 (42%), Positives = 219/332 (65%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP DI +W +I+ Y QN + +EAL F E++ N P++VT+A+ L+ACA LGA+DL
Sbjct: 324 MPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH+Y+ + G ++ +I ++L+DMY+KCG L+++L VF+ + +++F W+++I GLA+
Sbjct: 384 GGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A+ +F +M V+PN VTF ++L AC+H+GLV+EGR F M Y + P +
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+L +AG LE+A+ELI P+A +WGALLG C+++ N+E+A +A + L+
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET 563
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ NN G LL N+YA+ +W V+++R MK G+EK PG S IE+ +++F D
Sbjct: 564 DSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKE-PGCSSIEVNGIIHEFLVGDN 622
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S EIYS L ++ ++K YV + +L
Sbjct: 623 SHPLSTEIYSKLDEIVARIKSTGYVSDESHLL 654
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 11/224 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ +W T+I ++ + + + L F +M S P+ T V+ A + +L
Sbjct: 90 IPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA 149
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH VM+ F D++I ++L+ Y+ G LD + LVF K+ EK++ WNS+I G
Sbjct: 150 GQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQ 209
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SIT 175
G EAL +F RM EN PN VT + VLSAC +E GR C Y I
Sbjct: 210 GGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR-----WACDYIERNGID 264
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+D+ K G LEDA L + + + V W ++ G
Sbjct: 265 INLILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDG 307
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 48/259 (18%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI+SW +MI+ + Q EAL F MK P++VTM VLSACA L+ GR
Sbjct: 195 KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254
Query: 64 HLYVMQIGFDIDVYIGSALVDMY-------------------------------AKCGSL 92
Y+ + G DI++ + +A++DMY AK G
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDY 314
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSA 151
D + VF + +++ WN++I +G EALA+F + + +N +PN VT S L+A
Sbjct: 315 DAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAA 374
Query: 152 CTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
C G ++ G +++ + + + IT ++D+ SK G LE ALE+ S
Sbjct: 375 CAQLGAMDLGGWIHVYIKKQGIKLN--FHITTS------LIDMYSKCGHLEKALEVFYSV 426
Query: 205 KFQPNAVIWGALLGGCKLH 223
+ + + +W A++ G +H
Sbjct: 427 E-RRDVFVWSAMIAGLAMH 444
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
L A NE K+ + T+ ++ CA+ L +++H ++++ G D + L
Sbjct: 20 LTANNEQKS-----NPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTA 71
Query: 86 YA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNG 142
A SLD + VF ++ NL+ WN++I A + L +F +M++E+ PN
Sbjct: 72 CALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNS 131
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
TF V+ A T + G + M S ++ ++ S G L+ A L+
Sbjct: 132 YTFPFVIKAATEVSSLLAG-QAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAY-LVF 189
Query: 203 SSKFQPNAVIWGALLGG 219
S + + V W +++ G
Sbjct: 190 SKIVEKDIVSWNSMISG 206
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 208/322 (64%), Gaps = 4/322 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ +W MIT +QN F EA+ + M + G + T++ VLSAC HLG L +G
Sbjct: 204 MPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIG 263
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ +H Y + +GF V G L+DMY KCG+L + +F + +++L WNS+I LA
Sbjct: 264 KVVHGYAWRSCVGFGSSVVNG--LIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINCLA 321
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG + A+A+FD M E +EP+ VTF+ +L+ACTH G V+EG F M I PE+
Sbjct: 322 LHGHSKSAIAVFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEI 381
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDLL +AG EDA+ +I K QP+ VIWG+LL C+ HR LE+A +V +L+
Sbjct: 382 EHYGCIVDLLGRAGRFEDAMNVINDMKVQPDEVIWGSLLNACRTHRQLELAEFSVRKLLQ 441
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L PNN+ Y +L N+Y+E W EVTKIR MKE + K+ PG SWIE++RK ++F + D
Sbjct: 442 LNPNNANYVVMLANLYSEGGSWEEVTKIRKLMKEDIMGKKLPGCSWIEVDRKTHRFYSGD 501
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
+HP S++IY +L +L +++
Sbjct: 502 DAHPESEDIYDTLDELAASMEM 523
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 49/267 (18%)
Query: 24 EALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF---------- 72
+AL F M G +P+Q VL A +G + L R IH + + GF
Sbjct: 95 DALALFLRMLRRGRPAPNQFVYPLVLRAACAIG-VQLVRSIHSHACKSGFHAYDVIRTSL 153
Query: 73 ---------------------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111
+ +V +ALV YA+ G + ++++F ++ E+++ WN
Sbjct: 154 LDGYSRYGMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWN 213
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
++I G +G EA+ + RM+ E + NG T VLSAC H G+++ G+ + G
Sbjct: 214 AMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGK-----VVHG 268
Query: 172 YSITPEVEHYGC-----MVDLLSKAGLLEDALELIRSSKFQPNAV-IWGALLGGCKLHRN 225
Y+ V +G ++D+ K G L++A + +F ++ W +L+ LH +
Sbjct: 269 YAWRSCVG-FGSSVVNGLIDMYGKCGNLKEARWMF--DEFSDRSLTTWNSLINCLALHGH 325
Query: 226 LEIAHIAVNELMI--LEPNNSGYCTLL 250
+ A +E+ +EP+ + LL
Sbjct: 326 SKSAIAVFDEMRDEGIEPDVVTFVGLL 352
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ W MI Y+Q+ E+L F M + P++VT+ VLSAC LGAL+ G
Sbjct: 233 MKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESG 292
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y+ G I+V++G+AL+DMY+KCGSL+ + LVF ++R+K++ WNS+I G A+H
Sbjct: 293 RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMH 352
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ AL +F+ M +P +TFI +LSAC H GLVEEGR F M Y I P++EH
Sbjct: 353 GFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEH 412
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMV+LL +AG LE+A L+++ + V+WG LLG C+LH N+++ L+ +
Sbjct: 413 YGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQK 472
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL NMYA W V K+R MKE GIEK G S IE++ KV++F A ++
Sbjct: 473 LANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKE-HGCSSIEVDNKVHEFVAGERK 531
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L++++ LK Y P+ + +L
Sbjct: 532 HPKSKEIYVMLNEINSWLKARGYTPQTDVVL 562
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 37/250 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ S++ +I + Q++ F A +++M + G+ P+ T ++VL +C+ L+ G+ +H
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLH 164
Query: 65 LYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLD 93
+++G D+Y+ + LVD+YA K G LD
Sbjct: 165 CQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELD 224
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
++ +F ++E+++ CWN +I G A G +E+L +F RM+ PN VT ++VLSAC
Sbjct: 225 KARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACG 284
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G +E G R S I V ++D+ SK G LEDA L+ + V W
Sbjct: 285 QLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA-RLVFDRIRDKDVVAW 342
Query: 214 GALLGGCKLH 223
+++ G +H
Sbjct: 343 NSMIVGYAMH 352
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 37/214 (17%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH +++ G + + L YA G LD S+ VF E N+F +++II
Sbjct: 65 QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-------HAGLVEEGRRRFLSMTCG--- 171
A + +M+ VEPN TF SVL +C+ H ++ G L + G
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVD 184
Query: 172 --------------YSITPE--VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ PE + M+ SK G L+ A L K + + V W
Sbjct: 185 VYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMK-ERDVVCWNV 243
Query: 216 LLGG----------CKLHRNLEIAHIAVNELMIL 239
++GG KL R + +A NE+ +L
Sbjct: 244 MIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVL 277
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 215/326 (65%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARD+++W MI+C+SQ +EAL +N+M++ + D T+ ++S+CAHLGAL++G
Sbjct: 166 MPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIG 225
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + G D +Y+G+AL+DMYAKCGSLD+++L+F +++ K++F WNS+I G VH
Sbjct: 226 VQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVH 285
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ F +M+ ++PN VTF+ +L C+H GLV+EG + F M+ + + PEV+H
Sbjct: 286 GRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKH 345
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL +AG L+ ALE++ +S ++V+W LLG CK+H+N+ I IA+N L L
Sbjct: 346 YGCLVDLYGRAGKLDKALEIVSNSS-HNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELG 404
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++G C LL +YA A V ++R +K G +K PG SWIE+ +V++F DKS
Sbjct: 405 ATSAGDCILLATIYAGEKDKAGVARMRKMIKSQG-KKTTPGWSWIEIGEQVHKFVVDDKS 463
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
H S E+Y L ++ Q YV +
Sbjct: 464 HRYSVEVYEKLREVIHQASFFGYVGD 489
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 7/219 (3%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLY 66
+W ++I ++Q+ +A+ +N+M S PD T + VL AC + A +E+H
Sbjct: 71 AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGS 130
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ G+D DV + + LV Y+ G + + VF K+ ++L WN++I + G EA
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEA 190
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGCM 184
L +++M ENV+ +G T + ++S+C H G + G + RF + + +
Sbjct: 191 LQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFAREN---GLDQSLYVGNAL 247
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+D+ +K G L+ A+ LI + + W +++ G +H
Sbjct: 248 IDMYAKCGSLDQAI-LIFDRMQRKDIFTWNSMIVGYGVH 285
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLL 97
++ + +L C L L R+IH +V+ G V I + L++ A GSL + L
Sbjct: 3 NEKAILALLQGCNSLKRL---RKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQL 59
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGVTFISVLSAC 152
+F ++ WNSII G A +A+ +++M+ ++ P+ TF VL AC
Sbjct: 60 LFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/329 (44%), Positives = 213/329 (64%), Gaps = 6/329 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W +IT Y+QN EA+ FN M+ +G PD+VTM VLSAC+ +GALDLG
Sbjct: 290 MPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLG 349
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + + G DVY+ SAL+DMYAKCGSLD ++ VF + KN WN++I LA H
Sbjct: 350 KWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFH 409
Query: 121 GFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EAL++F RM +N V+PN +TFI VLSAC HAGLV+EGR+ F SM + + P+V
Sbjct: 410 GQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKV 469
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDL ++AGLL +A +LI+ +P+ ++ G+LLG C+ RN ++ + +
Sbjct: 470 EHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLE 529
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E +NSG + +YA + RW + K+RV M++ G+ K PG SWI++ V++F A D
Sbjct: 530 MELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSK-TPGCSWIDIGAHVHEFHAGD 588
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPEL 327
H S IY L+E++K Y+P +
Sbjct: 589 SLHNHSMNIY---QLLNEEMKREGYIPNI 614
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW +MI+ YS+ +EA+ F EM+ G PD++T+ +VL AC LG L LG
Sbjct: 189 MGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLG 248
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + +V++ +++ Y+GSAL+DMY KCG L + VF + K++ WN+II G A +
Sbjct: 249 RWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQN 308
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++EA+ +F+ M P+ VT I VLSAC+ G ++ G + + + +V
Sbjct: 309 GASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVYV 367
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L+DA+ + S + N V W A++ H
Sbjct: 368 ASALIDMYAKCGSLDDAVRVFESMPHK-NEVSWNAMISALAFH 409
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG 79
K++ ++ + ++K+ G+ + T + AC ++ L G+ H V + G D D Y+
Sbjct: 107 KKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVN 166
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+L+ MYA+CG + + VF ++ +++L WNS+I G + GF EA+ +F M E E
Sbjct: 167 HSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFE 226
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP--EVEHY--GCMVDLLSKAGLLE 195
P+ +T +SVL AC G + GR G+ + EV Y ++D+ K G L
Sbjct: 227 PDEMTLVSVLGACGDLGDLGLGR-----WVEGFVLEKKMEVNSYMGSALIDMYGKCGDLI 281
Query: 196 DALELIRSSKFQPN--AVIWGALLGG 219
A + S PN V W A++ G
Sbjct: 282 SARRVFDS---MPNKDVVTWNAIITG 304
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW +I Y+Q+ EAL F EMK G ++ T + LS CA + AL+LG
Sbjct: 354 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 413
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V++ G + Y+G+AL+ MY KCG++D + +VF + EK + WN++I G A H
Sbjct: 414 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F+ M + P+ VT + VLSAC+H GLV++G F SMT Y IT +H
Sbjct: 474 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L+DA L+++ F+P+A WGALLG ++H N E+ A + +E
Sbjct: 534 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME 593
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YA RW +V ++R+ M++ G+ K+ PG SW+E++ K++ F D
Sbjct: 594 PDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGV-KKVPGYSWVEVQNKIHTFTVGDSV 652
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D IY+ L +LD ++K YV + +L
Sbjct: 653 HPERDRIYTFLEELDLKMKKEGYVSSTKLVL 683
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 24/229 (10%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDL 59
P RD+ +WT M++ Y QN EA F+ M KNS V+ +++ +D
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS------VSWNAIIAGYVQCKRMDQ 315
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE+ M +V + ++ YA+ G + ++ F ++ +++ W +II G A
Sbjct: 316 AREL-FEAMPCQ---NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 371
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G+ EAL +F M + N TF S LS C +E G++ G + +E
Sbjct: 372 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQ-----VHGRVVKAGLE 426
Query: 180 HYGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G ++DA ++ + V W ++ G H
Sbjct: 427 S-GCYVGNALLVMYCKCGNIDDAY-IVFEGIEEKEVVSWNTMIAGYARH 473
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 25/276 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD++SW M++ Y+QN +EA + F+EM KNS ++ +L+A G ++
Sbjct: 137 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS------ISWNGMLAAYVQNGRIE 190
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R + + D ++ + ++ Y K L + +F ++ E++ WN++I G A
Sbjct: 191 DARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 246
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G EA +F+ +V T+ +++S G+++E RR F M S++
Sbjct: 247 QNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS--- 299
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ ++ + ++ A EL + Q N W ++ G +N +IA A N
Sbjct: 300 --WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG--YAQNGDIAQ-ARNFFDR 353
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274
+ +S ++ YA+ E + V MK G
Sbjct: 354 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 20/216 (9%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
DI+ W IT + +N Q AL FN M + S IS + ++S C L R++
Sbjct: 48 DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWN-----AMISGCLSNDKFYLARQL 102
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+ D+ + ++ + +L + L+F ++ E+++ WN+++ G A +G+
Sbjct: 103 FEKMPTR----DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA +FD M + N +++ +L+A G +E+ RR F S E+ + C
Sbjct: 159 KEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFES-----KADWELISWNC 209
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M+ K L DA + + + V W ++ G
Sbjct: 210 MMGGYVKRNRLVDARGIFDRMP-ERDEVSWNTMISG 244
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 26/223 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI+ + + R A F++M D V+ +LS A G +
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEA 161
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
+EI FD + + ++ Y + G ++ + +F + L WN ++ G
Sbjct: 162 KEI--------FDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGG 213
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
+A +FDRM E + V++ +++S G + E +R F S
Sbjct: 214 YVKRNRLVDARGIFDRM----PERDEVSWNTMISGYAQNGELLEAQRLFEE-----SPVR 264
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + MV + G+L++A + + N+V W A++ G
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMP-EKNSVSWNAIIAG 306
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 33/174 (18%)
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
D D+ + + + + G D +L +F + ++ WN++I G + + A +F++
Sbjct: 46 DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105
Query: 133 MI----------------YENV-----------EPNGVTFISVLSACTHAGLVEEGRRRF 165
M Y N+ E + V++ ++LS G V+E + F
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M C SI+ + M+ + G +EDA L SK + W ++GG
Sbjct: 166 DEMPCKNSIS-----WNGMLAAYVQNGRIEDARRLF-ESKADWELISWNCMMGG 213
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 214/332 (64%), Gaps = 5/332 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISW+ MI Y Q F EAL+ F++M+ I P + + +VLSACA+LGALD G
Sbjct: 263 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + +D +G++LVDMYAKCG +D + VF K+ K + WN++I GLA+H
Sbjct: 323 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMH 382
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M ++ PN +TF+ VL+AC H GLV++G F SM Y + P++EH
Sbjct: 383 GRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEH 439
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGLL +A +++ S +P +WGALLG C+ H N+E+ L+ LE
Sbjct: 440 YGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELE 499
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER-KVYQFAASDK 299
P NSG TLL N+YA+ RW EV ++R MKE GI K PG+S I++ R +V++F D
Sbjct: 500 PQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI-KTTPGTSIIDLGRGEVHKFIIGDG 558
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +IY L K+ E+L++ Y P+ +L
Sbjct: 559 SHPQVKDIYQMLDKVKERLQMEGYEPDPSQVL 590
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 14/221 (6%)
Query: 5 DIISWTTMI-TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ W MI C N+ F+ A+ + EM + P++ T VL AC+ G + G ++
Sbjct: 102 NVFLWNCMIKVCIENNEPFK-AILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQV 160
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAVHGF 122
H ++++ G D +I S+ + MYA G L + + K E + CWN++I+G G
Sbjct: 161 HAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGE 220
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +F+ M ++ IS S C G+VE R F M I+ +
Sbjct: 221 VEAARELFEGMPDRSMISTWNAMISGFSRC---GMVEVAREFFDEMKERDEIS-----WS 272
Query: 183 CMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
M+D + G +ALE+ ++ K +P + ++L C
Sbjct: 273 AMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG-----SLDRSLLVFFKLREKNLFCWNSIIE 115
++ H +++ G D YI +LV YA S + SL VF +R+ N+F WN +I+
Sbjct: 52 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
+ +A+ ++ M+ + PN T+ +VL AC+ +G+V EG + + + +
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLV-KHGLG 170
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + + G L +A ++ + +AV W A++ G
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 214
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 222/324 (68%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RDI+SWT++I+ Q KQ +++L+ F +M+ SG+ PD++ + +VLSACA LGALD G
Sbjct: 264 LPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYG 323
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + Y+ + G + D++IG+ALVDMYAKCG ++ +L +F + +N+F WN+++ GLA+H
Sbjct: 324 RWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMH 383
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPEVE 179
G HEAL F+ MI + PN VTF+++L+AC H+GLV EGR F M ++ +P +E
Sbjct: 384 GHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLE 443
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL +AGLL++A + IR+ P+ +IWGALL CK + N+E++ ++ L+ L
Sbjct: 444 HYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLEL 503
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ +SG LL N+YA RW +VT++R MK+ GI K PGSS IE++ + ++F D
Sbjct: 504 KSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKF-PGSSVIEVDGEAHEFLVGDT 562
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
+H +++I+ L+ L Q+ L +
Sbjct: 563 NHSRNEDIHILLNILANQVYLEGH 586
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT +I+ Y + F EA++ F +M + P+ T +VL AC +G L +G
Sbjct: 166 MLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMG 222
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V + F I + +G+ALVDMY KC L + +F +L ++++ W SII GL
Sbjct: 223 KGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQC 282
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
++L +F M VEP+ + SVLSAC G ++ GR + ++ I ++
Sbjct: 283 KQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ---GIEWDI 339
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN--EL 236
+VD+ +K G +E AL + N W ALLGG +H + H A+ EL
Sbjct: 340 HIGTALVDMYAKCGCIEMALHIFNGIP-NRNIFTWNALLGGLAMHGH---GHEALKHFEL 395
Query: 237 MI---LEPNNSGYCTLL 250
MI + PN + +L
Sbjct: 396 MIGAGIRPNEVTFLAIL 412
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + T+I Y+ + + A + + +G PD T VL AC + G ++H
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+++GF D+Y+ ++L+ Y+ CG + VF ++ +++ W +I G G EA
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ +F +M +V PN TF+SVL AC G + G+
Sbjct: 191 INLFLKM---DVVPNVATFVSVLVACGRMGYLSMGK 223
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 215/326 (65%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARD+++W MI+C+SQ +EAL +N+M++ + D T+ ++S+CAHLGAL++G
Sbjct: 166 MPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIG 225
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + G D +Y+G+AL+DMYAKCGSLD+++L+F +++ K++F WNS+I G VH
Sbjct: 226 VQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVH 285
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ F +M+ ++PN VTF+ +L C+H GLV+EG + F M+ + + PEV+H
Sbjct: 286 GRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKH 345
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL +AG L+ ALE++ +S ++V+W LLG CK+H+N+ I IA+N L L
Sbjct: 346 YGCLVDLYGRAGKLDKALEIVSNSS-HNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELG 404
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++G C LL +YA A V ++R +K G +K PG SWIE+ +V++F DKS
Sbjct: 405 ATSAGDCILLATIYAGEKDKAGVARMRKMIKSQG-KKTTPGWSWIEIGEQVHKFVVDDKS 463
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
H S E+Y L ++ Q YV +
Sbjct: 464 HRYSVEVYEKLREVIHQASFFGYVGD 489
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 7/219 (3%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLY 66
+W ++I ++Q+ +A+ +N+M S PD T + VL AC + A +E+H
Sbjct: 71 AWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGS 130
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ G+D DV + + LV Y+ GS+ + VF K+ ++L WN++I + G EA
Sbjct: 131 VIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEA 190
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGCM 184
L +++M ENV+ +G T + ++S+C H G + G + RF + + +
Sbjct: 191 LQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFAREN---GLDQSLYVGNAL 247
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+D+ +K G L+ A+ LI + + W +++ G +H
Sbjct: 248 IDMYAKCGSLDQAI-LIFDRMQRKDIFTWNSMIVGYGVH 285
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLL 97
++ + +L C L L R+IH +V+ G V I + L++ A GSL + L
Sbjct: 3 NEKAILALLQGCNSLKRL---RKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQL 59
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGVTFISVLSAC 152
+F ++ WNSII G A +A+ +++M+ ++ P+ TF VL AC
Sbjct: 60 LFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKAC 115
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 148/339 (43%), Positives = 226/339 (66%), Gaps = 13/339 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I W TMI N F +A++ + M++ G P+ T VL ACA L L LG +IH
Sbjct: 76 NIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIH 135
Query: 65 LYV---------MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
V M++G +V++G++LVDMYAKCG+++++ VF + EK++ W ++I+
Sbjct: 136 TLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 195
Query: 116 GLAVHGFAHEALAMFDRMIYEN---VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172
G A++G EA+ +F +M EN ++P+G TFI +L CTHAGLV+EGRR F SM +
Sbjct: 196 GYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFF 255
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
S+TP +EHYGCMVDLL +AGLL++A +LIR+ + NA++WGALLG C++HR+ ++A +A
Sbjct: 256 SLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELA 315
Query: 233 VNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVY 292
+ +L+ LEP NSG LL N+Y+ +W E K+R++M E I+K PG SWIE++ V+
Sbjct: 316 LKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP-PGCSWIEVDGIVH 374
Query: 293 QFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+F DK HP S++IY+ L +L +++K+A YVP + +L
Sbjct: 375 EFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVL 413
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS---GISPDQVTMATVLSACAHLGAL 57
MP +DI+SW MI Y+ N +EA+D F +M+ GI PD T +L C H G +
Sbjct: 182 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLV 241
Query: 58 DLGREIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSII 114
D GR + M F + I +VD+ + G LD + + + E N W +++
Sbjct: 242 DEGRR-YFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALL 300
Query: 115 EGLAVH 120
+H
Sbjct: 301 GACRIH 306
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 82 LVDMYAKCG----SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
L++M +C + + +F ++++ N+F WN++I GL + +A+ + M E
Sbjct: 48 LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107
Query: 138 VEPNGVTFISVLSACT-----------HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
PN TF VL AC H +V+E + + M G + V +VD
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCI-MEMG--MVRNVFVGTSLVD 164
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +K G +E A + + + V WGA++ G L+
Sbjct: 165 MYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALN 200
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D I W MI Y+Q+ + EAL F M S PD+VT+ VLSA A LG ++ G
Sbjct: 211 LPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESG 270
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ +H YV ++V + +ALVDMY KCGSL+ ++ VF + K++ WN++I G A+
Sbjct: 271 KWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAM 330
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + +AL MF ++ + + P +TFI +L+AC+H+GLVEEGR F SM Y I P++E
Sbjct: 331 HGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIE 390
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGL+E+A L++S P+AV+W +LL C+LH+N+ + + L+
Sbjct: 391 HYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVAN 450
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NSG LL N+YA V +W EV ++R MK GI+K PG S IE++RKVY+F A D
Sbjct: 451 GLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKE-PGCSAIEIDRKVYEFVAGDM 509
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +DEIY+ L K++ +K +VP+ E +L
Sbjct: 510 SHPCTDEIYAMLDKMNALVKEHGHVPQTELVL 541
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
I +T+ I +S L ++M + G+ P T++ L AC L LGR +H Y
Sbjct: 88 IFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACR---GLSLGRALHAY 144
Query: 67 VMQIGFDIDVYIGSALVDMY-------------------------------AKCGSLDRS 95
++ D Y+ +AL+ MY A G+LD +
Sbjct: 145 AFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDA 204
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F L K+ CWN++I+G HG +EAL +F RM+ + EP+ VT + VLSA
Sbjct: 205 RRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQL 264
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
G VE G+ + + V +VD+ K G LEDA+ + + V+W A
Sbjct: 265 GTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG-NKDIVVWNA 323
Query: 216 LLGGCKLH 223
++ G +H
Sbjct: 324 MINGYAMH 331
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
A++L+AC+ E+H V++ G D D + L YA G LD SL + + ++
Sbjct: 28 ASLLAACS---TARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKD 84
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ S I + G LA+ M+ E + P T + L AC
Sbjct: 85 PTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC 132
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 218/332 (65%), Gaps = 4/332 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG +P+ VTM ++L ACAHLGA+D+GR I
Sbjct: 286 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 345
Query: 64 HLYVMQIGFDIDVYIGS---ALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
H+Y+ + + + S +L+DMYAKCG +D + VF + ++L WN++I G A+
Sbjct: 346 HVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAM 405
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A+ A +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SMT GY ITP++E
Sbjct: 406 HGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLE 465
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL +GL ++A E+I + +P+ VIW +LL CK+H NLE+ +L+ +
Sbjct: 466 HYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKI 525
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP NSG LL N+YA RW EV KIR + + G++K+ PG S IE++ V++F DK
Sbjct: 526 EPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDK 585
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY L +++ L+ A +VP+ +L
Sbjct: 586 LHPQNREIYGMLEEMEVLLEEAGFVPDTSEVL 617
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 147/281 (52%), Gaps = 17/281 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D++SW MI+ Y + ++EAL+ F EM + + PD+ TM TV+SACA +++L
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR +H ++ GF ++ I +AL+D+Y+K G ++ + +F L K++ WN++I G
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPE 177
EAL +F M+ PN VT +S+L AC H G ++ GR +++ +T
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
++D+ +K G ++ A ++ SS + W A++ G +H A + +
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420
Query: 238 I--LEPNN------------SGYCTLLLNMYAEVSRWAEVT 264
+ +EP++ SG L N++ ++R E+T
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEIT 461
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 35/254 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ PD T +L +CA G++IH
Sbjct: 53 NLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIH 112
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV-------------------------- 98
+V+++GFD+D+Y+ ++L+ MYA+ G L+ + V
Sbjct: 113 GHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIE 172
Query: 99 -----FFKLREKNLFCWNSIIEGLAVHGFAHEALAMF-DRMIYENVEPNGVTFISVLSAC 152
F ++ K++ WN++I G G EAL +F + M+ NV P+ T ++V+SAC
Sbjct: 173 SAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSAC 232
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ +E G R S + ++ ++DL SK G +E A EL + + +
Sbjct: 233 AQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF-DGLWNKDVIS 290
Query: 213 WGALLGGCKLHRNL 226
W L+GG H NL
Sbjct: 291 WNTLIGGYT-HMNL 303
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 140/314 (44%), Positives = 211/314 (67%), Gaps = 1/314 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ W+ MI Y+QN + EAL+ F MK++ I P+ VT+ +VLSACA LG+++ G
Sbjct: 67 MARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I YV G +VY+ SAL+ MY+KCG++ ++ +F KL +++ WNS+I GLA++
Sbjct: 127 ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAIN 186
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A+A+++RM V+PN +TF+ +L+ACTHAG VE G F SM ++I+P +EH
Sbjct: 187 GFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPNIEH 246
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C+VDL ++G L DA E I + +PN VIWG LL ++H N+E+A +A +L+ LE
Sbjct: 247 FACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELE 306
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG +L N+YA SRW E K+R MK+ ++K SW+E+E +V++F D S
Sbjct: 307 PDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQK-AAAYSWVEVEDRVHKFLVGDTS 365
Query: 301 HPASDEIYSSLSKL 314
HP SDE+YS++ L
Sbjct: 366 HPRSDEVYSTIDGL 379
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 4/214 (1%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
PB++T+ATVLS CA LG L++G I ++ + +A+++MY KCG++D LV
Sbjct: 4 PBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 63
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F + +++ W+++I G A +G ++EAL +F+ M ++PN VT +SVLSAC G V
Sbjct: 64 FDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSV 123
Query: 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
E G R S + V ++ + SK G + A ++ Q + V W +++
Sbjct: 124 ETG-ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNSMIM 181
Query: 219 GCKLHRNLEIAHIAVNELMILE--PNNSGYCTLL 250
G ++ E A N + +E PNN + LL
Sbjct: 182 GLAINGFAEDAIALYNRMKEIEVKPNNITFVGLL 215
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW +I Y+Q+ EAL F EMK G ++ T + LS CA + AL+LG
Sbjct: 273 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V++ G + Y+G+AL+ MY KCG++D + +VF + EK + WN++I G A H
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F+ M + P+ VT + VLSAC+H GLV++G F SMT Y IT +H
Sbjct: 393 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L+DA L+++ F+P+A WGALLG ++H N E+ A + +E
Sbjct: 453 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME 512
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YA RW +V ++R+ M++ G+ K+ PG SW+E++ K++ F D
Sbjct: 513 PDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGV-KKVPGYSWVEVQNKIHTFTVGDSV 571
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D IY+ L +LD ++K YV + +L
Sbjct: 572 HPERDRIYTFLEELDLKMKKEGYVSSTKLVL 602
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 24/229 (10%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDL 59
P RD+ +WT M++ Y QN EA F+ M KNS V+ +++ +D
Sbjct: 181 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS------VSWNAIIAGYVQCKRMDQ 234
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE+ M +V + ++ YA+ G + ++ F ++ +++ W +II G A
Sbjct: 235 AREL-FEAMPCQ---NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 290
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G+ EAL +F M + N TF S LS C +E G++ G + +E
Sbjct: 291 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQ-----VHGRVVKAGLE 345
Query: 180 HYGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G ++DA ++ + V W ++ G H
Sbjct: 346 S-GCYVGNALLVMYCKCGNIDDAY-IVFEGIEEKEVVSWNTMIAGYARH 392
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 25/276 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD++SW M++ Y+QN +EA + F+EM KNS ++ +L+A G ++
Sbjct: 56 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS------ISWNGMLAAYVQNGRIE 109
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R + + D ++ + ++ Y K L + +F ++ E++ WN++I G A
Sbjct: 110 DARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 165
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G EA +F+ +V T+ +++S G+++E RR F M S++
Sbjct: 166 QNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS--- 218
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ ++ + ++ A EL + Q N W ++ G +N +IA A N
Sbjct: 219 --WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG--YAQNGDIAQ-ARNFFDR 272
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274
+ +S ++ YA+ E + V MK G
Sbjct: 273 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+L + L+F ++ E+++ WN+++ G A +G+ EA +FD M + N +++ +L+
Sbjct: 45 NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLA 100
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
A G +E+ RR F S E+ + CM+ K L DA + + +
Sbjct: 101 AYVQNGRIEDARRLFES-----KADWELISWNCMMGGYVKRNRLVDARGIFDRMP-ERDE 154
Query: 211 VIWGALLGG 219
V W ++ G
Sbjct: 155 VSWNTMISG 163
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 214/328 (65%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+ MI+ Y+Q + +EAL+ F+EM+ + P++VTM +VL +CA LGA + G
Sbjct: 283 MDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG 342
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + + V +G+ L+D YAKCG +DRS+ VF ++ KN+F W ++I+GLA +
Sbjct: 343 KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANN 402
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL F M+ +V+PN VTFI VLSAC+HA LV++GR F SM + I P +EH
Sbjct: 403 GEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEH 462
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AG LE+A + I + F PNAV+W LL C+ H+N+E+A ++ + LE
Sbjct: 463 YGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLE 522
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N YA V R + ++R +KE I K+ PG S IE++ V++F + D
Sbjct: 523 PAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEI-KKIPGCSLIELDGVVHEFFSEDGE 581
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H S EI+ +L K+ +Q+K YVP +
Sbjct: 582 HKHSKEIHDALDKMMKQIKRLGYVPNTD 609
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R I++W +M++ Y++N + E + F ++ I D VTM +VL AC L L++G
Sbjct: 182 MPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y++ G + + ++L+DMYAKCG +D + +F ++ ++++ W+++I G A
Sbjct: 242 ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG---------RRRFLSMTCG 171
EAL +F M NV PN VT +SVL +C G E G ++ L++T G
Sbjct: 302 DRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG 361
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D +K G ++ ++E+ + F+ N W AL+ G
Sbjct: 362 TQ----------LIDFYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQG 398
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 38/285 (13%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
++ MI + + AL F +M + D+ T ++VL AC+ + AL G ++H +
Sbjct: 88 AYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALI 147
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ GF + ++ + L+ MYA CG + + VF + E+++ WNS++ G +G E +
Sbjct: 148 LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVV 207
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAG-----------LVEEGRRRFLSMTCGYSITP 176
+F +++ +E + VT ISVL AC +V +G RR ++T
Sbjct: 208 KLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTS----- 262
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG------CK----LHRNL 226
++D+ +K G ++ A +L + + V W A++ G CK L +
Sbjct: 263 -------LIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISGYAQADRCKEALNLFHEM 314
Query: 227 EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
+ ++ NE+ ++ + Y +L Y E +W + MK
Sbjct: 315 QKGNVYPNEVTMV---SVLYSCAMLGAY-ETGKWVHFYIKKKKMK 355
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+++H ++++ +D I A+++ A ++D +L +F + + +N +I GLA
Sbjct: 38 QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-------------RF 165
AL +F +M ++V+ + TF SVL AC+ + EG + F
Sbjct: 98 FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF 157
Query: 166 LSMT-------CG--------YSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS---K 205
+ T CG + PE + + M+ +K GL ++ ++L R +
Sbjct: 158 VENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR 217
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLLLNMYAE 256
+ + V ++L C NLEI + + E ++ L NN+ T L++MYA+
Sbjct: 218 IEFDDVTMISVLMACGRLANLEIGEL-IGEYIVSKGLRRNNT-LTTSLIDMYAK 269
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 212/326 (65%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ++W +MI+ +SQN + +EALD F +M GI + +T++ LSACA L A+ G
Sbjct: 505 MSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYG 564
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++ D++ SAL+DMYAKCG+L+ +L VF + +KN WNSII H
Sbjct: 565 KEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAH 624
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E++++ M E +P+ VTF++++SAC HAGLVEEG + F MT Y I P +EH
Sbjct: 625 GLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEH 684
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDL S++G L+ A++ I F+P+A IWGALL C++HRN+E+A IA EL L+
Sbjct: 685 FACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLD 744
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY L+ N+ A RW V+K+R MK+ I K PG SW+++ + F ASDKS
Sbjct: 745 PANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILK-IPGYSWVDVNNSSHLFVASDKS 803
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S++IY+SL L ++L+ YVP
Sbjct: 804 HPESEDIYTSLKTLLQELREEGYVPR 829
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A D++ +TMI+ Y N EAL F + I P+ VT+A+VL CA + AL LG++
Sbjct: 406 AIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQ 465
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH YV++ ++ Y+ SAL+DMYAKCG LD S +F K+ +K+ WNS+I + +G
Sbjct: 466 IHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGK 525
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F +M E ++ N +T + LSAC + G + +T I ++
Sbjct: 526 PQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYG-KEIHGVTIKGPIKADIFAES 584
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLH 223
++D+ +K G LE AL R +F P N V W +++ H
Sbjct: 585 ALIDMYAKCGNLELAL---RVFEFMPDKNEVSWNSIISAYGAH 624
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 10/221 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI+ QN F EA F +M+ SG PD +T+ ++L A L L G
Sbjct: 303 MPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQG 362
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ ++DV++ SALVD+Y KC + + ++ R ++ +++I G ++
Sbjct: 363 KEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLN 422
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL MF ++ + ++PN VT SVL C + G++ GY + E
Sbjct: 423 GMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQ-----IHGYVLRNAYER 477
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ +K G L D I Q + V W +++
Sbjct: 478 KCYVESALMDMYAKCGRL-DLSHYIFLKMSQKDEVTWNSMI 517
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ W +I ++ Q A+ + +M + SPD T+ V+ +CA LGA+ LGR +H
Sbjct: 105 LPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVH 164
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
IG DVY+GSALV MYA G L + F + E++ WN +++G G
Sbjct: 165 RTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVD 224
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSAC-THAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F M EPN T LS C T A L+ + L++ CG + PEV
Sbjct: 225 GAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCG--LEPEVAVANT 282
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
++ + +K L+DA L Q + V W ++ GC
Sbjct: 283 LLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGC 318
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 39/256 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD + W M+ + A+ F M+ SG P+ T+A LS CA L G
Sbjct: 202 IPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G + +V + + L+ MYAKC LD + +F + + +L WN +I G +
Sbjct: 262 AQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQN 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G EA +F M P+ +T +S+L A T +++G+ ++ C + +V
Sbjct: 322 GLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNC---VNMDV 378
Query: 179 EHYGCMVDLLSKA-------------------------------GLLEDALELIR---SS 204
+VD+ K G+ E+AL++ R
Sbjct: 379 FLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQ 438
Query: 205 KFQPNAVIWGALLGGC 220
+PNAV ++L GC
Sbjct: 439 CIKPNAVTIASVLPGC 454
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +D ISW +MI Y+Q+ EAL+ F+ M ++ G+ + VT++ VL ACAH GAL
Sbjct: 1312 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 1371
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH V+++ + +V +G++++DMY KCG ++ + F +++EKN+ W +++ G +
Sbjct: 1372 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 1431
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A EAL +F +M+ V+PN +TF+SVL+AC+HAGLVEEG F +M Y I P +E
Sbjct: 1432 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 1491
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL +AG L +A LI+ K +P+ V+WG+LLG C++H+N+++ IA +L L
Sbjct: 1492 HYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 1551
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N GY LL N+YA+ RWA+V ++R+ MK + K PG S +E++ +V+ F DK
Sbjct: 1552 DPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKP-PGFSLVELKGRVHVFLVGDK 1610
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY L KL +L+ YVP + ++L
Sbjct: 1611 EHPHHEMIYKYLEKLTLELQKIGYVPNMTSVL 1642
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 127/199 (63%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P+++++SWT MI Y +N+Q EAL+ F M+ I P++ TM +++ AC +G L LG
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y ++ +I VY+G+AL+DMY+KCGS+ ++ VF + K+L WNS+I L VH
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M NV+P+ +TFI VL AC H V+EG F MT Y I P EH
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396
Query: 181 YGCMVDLLSKAGLLEDALE 199
Y CM +L +++ L++A +
Sbjct: 397 YECMTELYARSNNLDEAFK 415
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 17/235 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQ-------FREALDAFNEMKNSGISP-DQVTMATVLSACA 52
+P R+++SWT+MIT Y QN+Q F++ L+ E+++ P D V M +VLSAC+
Sbjct: 1203 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262
Query: 53 HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS 112
+ + +H +V++ GFD + +G+ L+D YAKCG S VF + EK+ WNS
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322
Query: 113 IIEGLAVHGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSM 168
+I A G + EAL +F M+ + V N VT +VL AC HAG + G+ + + M
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
Y++ ++D+ K G +E A + K + N W A++ G +H
Sbjct: 1383 DLEYNVCVGTS----IIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 1432
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 66/360 (18%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+W +I + N +AL + M GI+ D+ T V+ AC + ++DLG+ +H
Sbjct: 91 FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL--------- 117
+++ GF DV++ + L+D Y KCG +L VF K+R +N+ W ++I GL
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 118 -----------------AVHGF-----AHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
++G+ EAL +F RM EN+ PN T +S++ ACT
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 156 GLVEEGRRRFLSMTCGYSITPEVE---HYG-CMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G++ GR Y+I +E + G ++D+ SK G ++DA+E+ + + +
Sbjct: 271 GILTLGRG-----IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLP 324
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWA----EVTKIR 267
W +++ +H G LN+++E+ R +T I
Sbjct: 325 TWNSMITSLGVH---------------------GLGQEALNLFSEMERVNVKPDAITFIG 363
Query: 268 VAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
V + I+ G ++ + Y A + + E+Y+ + LDE K V L
Sbjct: 364 VLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSL 423
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 49/326 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW ++I ++ EAL AF+ ++ G+ P + + + +C+ L L GR H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
GF+ D+++ SAL+DMY+KCG L + +F ++ +N+ W S+I G + A
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 1225
Query: 125 EALAMFDRMIYE--------NVEPNGVTFISVLSACT-----------HAGLVEEGRRRF 165
AL +F + E NV + V +SVLSAC+ H +V++G
Sbjct: 1226 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 1285
Query: 166 LSM---------TCGYSITPEVE----------HYGCMVDLLSKAGLLEDALE----LIR 202
+ + CG + + + M+ + +++GL +ALE ++R
Sbjct: 1286 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 1345
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-PNNSGYCTLLLNMYAEVSRWA 261
+ NAV A+L C L ++++ ++ N T +++MY + R
Sbjct: 1346 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 1405
Query: 262 EVTKIRVAMKELGIEKRCPGSSWIEM 287
K MKE ++ SW M
Sbjct: 1406 MAKKTFDRMKEKNVK------SWTAM 1425
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH +++ G D + L+ +Y+ G + ++L+F++++ F WN II ++
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + +AL ++ M+ + + + TF V+ ACT+ ++ G+ S+ Y + +V
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI-KYGFSGDVFV 162
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D K G AL++ + + N V W ++ G
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 99 FFKLREK-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
F+K +K N+ WNS+I LA G + EAL F + + P +F + +C+
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157
Query: 158 VEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ GR +S + E + + ++D+ SK G L+DA L + N V W +
Sbjct: 1158 LVSGR---MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTS 1213
Query: 216 LLGG 219
++ G
Sbjct: 1214 MITG 1217
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 206/324 (63%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW +I Y+Q+ + EAL+ F E+K G S ++ T LS CA + AL+LG
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++G+ ++G+AL+ MY KCGS+D + F + EK++ WN+++ G A H
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +AL +F+ M V+P+ +T + VLSAC+H GL++ G F SMT Y + P +H
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG LE+A +LIR+ FQP A WGALLG ++H N E+ A + +E
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW + K+R M+++G++K PG SW+E++ K++ F+ D S
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQK-VPGYSWVEVQNKIHTFSVGDCS 652
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP + IY+ L +LD +++ YV
Sbjct: 653 HPEKERIYAYLEELDLKMREEGYV 676
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 22/228 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT M++ Y QN EA F+EM ++V+ +++ +D+ R
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIAR 317
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ +I + + ++ Y + G + ++ F + +++ W +II G A G
Sbjct: 318 E--LFESMPCRNISSW--NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEH 180
EAL MF + + N TF LS C +E G++ ++ GY
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT------ 427
Query: 181 YGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +++A + + + + V W +L G H
Sbjct: 428 -GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARH 473
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 118/272 (43%), Gaps = 33/272 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW M+T Y +N + +A F+ M D V+ ++LS A G +D
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK----DVVSWNSLLSGYAQNGYVDEA 161
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+ FD + + L+ Y G ++ + L+F + +L WN ++ G
Sbjct: 162 REV--------FDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG 213
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
+A +FD+M + +++ +++S G + + RR F S T
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDA----ISWNTMISGYAQGGGLSQARRLFDE-----SPTR 264
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+V + MV + G+L++A + N V + A++ G + ++IA EL
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAGYVQTKKMDIAR----EL 319
Query: 237 MILEP--NNSGYCTLLLNMYAEVSRWAEVTKI 266
P N S + T++ Y ++ A+ K
Sbjct: 320 FESMPCRNISSWNTMITG-YGQIGDIAQARKF 350
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNS----GISPDQVTMATVLSACAHL 54
MP +D++SW ++++ Y+QN EA + F+ M KNS G+ V + AC
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSA-----------------LVDMYAKCGSLDRSLL 97
+ I + GF +G A ++ YA+ G L ++
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARR 256
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F + +++F W +++ G +G EA FD M E N V++ ++++
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKK 312
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ R F SM C + + M+ + G + A + Q + V W A++
Sbjct: 313 MDIARELFESMPC-----RNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAII 366
Query: 218 GG 219
G
Sbjct: 367 AG 368
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 18/215 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ W I+ + +N AL FN M V+ ++S +L R +
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNLARNLF 103
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + D++ + ++ Y + L + +F + EK++ WNS++ G A +G+
Sbjct: 104 DQMPER----DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA +FD M E N +++ +L+A H G +EE F S + I+ + C+
Sbjct: 160 EAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS-----WNCL 210
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + L DA L + +A+ W ++ G
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISG 244
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 206/324 (63%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW +I Y+Q+ + EAL+ F E+K G S ++ T LS CA + AL+LG
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++G+ ++G+AL+ MY KCGS+D + F + EK++ WN+++ G A H
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +AL +F+ M V+P+ +T + VLSAC+H GL++ G F SMT Y + P +H
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG LE+A +LIR+ FQP A WGALLG ++H N E+ A + +E
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW + K+R M+++G++K PG SW+E++ K++ F+ D S
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQK-VPGYSWVEVQNKIHTFSVGDCS 652
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP + IY+ L +LD +++ YV
Sbjct: 653 HPEKERIYAYLEELDLKMREEGYV 676
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 39/142 (27%)
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ GL++ G F M YS+TP +HY CM+DLL + LE+
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273
GALLG ++H N E+ A + P NSG ++K M+++
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISK----MRDV 857
Query: 274 GIEKRCPGSSWIEMERKVYQFA 295
G++K PG SW E++ K++ F+
Sbjct: 858 GVQK-VPGYSWFEVQNKIHTFS 878
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 22/228 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT M++ Y QN EA F+EM ++V+ +++ +D+ R
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIAR 317
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ +I + + ++ Y + G + ++ F + +++ W +II G A G
Sbjct: 318 E--LFESMPCRNISSW--NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEH 180
EAL MF + + N TF LS C +E G++ ++ GY
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT------ 427
Query: 181 YGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +++A + + + + V W +L G H
Sbjct: 428 -GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARH 473
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 26/233 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW M+T Y +N + +A F+ M D V+ ++LS A G +D
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK----DVVSWNSLLSGYAQNGYVDEA 161
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+ FD + + L+ Y G ++ + L+F + +L WN ++ G
Sbjct: 162 REV--------FDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG 213
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
+A +FD+M + +++ +++S G + + RR F S T
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDA----ISWNTMISGYAQGGGLSQARRLFDE-----SPTR 264
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+V + MV + G+L++A + N V + A++ G + ++IA
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAGYVQTKKMDIA 316
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNS----GISPDQVTMATVLSACAHL 54
MP +D++SW ++++ Y+QN EA + F+ M KNS G+ V + AC
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSA-----------------LVDMYAKCGSLDRSLL 97
+ I + GF +G A ++ YA+ G L ++
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARR 256
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F + +++F W +++ G +G EA FD M E N V++ ++++
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKK 312
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ R F SM C + + M+ + G + A + Q + V W A++
Sbjct: 313 MDIARELFESMPC-----RNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAII 366
Query: 218 GG 219
G
Sbjct: 367 AG 368
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ W I+ + +N AL FN M V+ ++S +L R +
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNLARNL- 102
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD D++ + ++ Y + L + +F + EK++ WNS++ G A +
Sbjct: 103 -------FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQN 155
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA +FD M E N +++ +L+A H G +EE F S + I+
Sbjct: 156 GYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS----- 206
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ C++ + L DA L + +A+ W ++ G
Sbjct: 207 WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISG 244
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 212/324 (65%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW+ +I ++ Q EAL+ F M+ + + + VT+A+VLS CA L AL LGREIH
Sbjct: 375 NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIH 434
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V++ D ++ +G+ L++MY K GS LVF K+ K+L WN+++ G +HG
Sbjct: 435 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 494
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ FD+MI + EP+GVTF++VLSAC+HAGLV EGR F M + + P++EHY CM
Sbjct: 495 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 554
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL +AGLL++A ++++S +PNA +WGALL C++H+N E+A +++ L +
Sbjct: 555 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 614
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA RW + K+R++ K G+ K+ PG SWI++++KVY F+A + H
Sbjct: 615 GSYMLLSNIYAASGRWEDSAKVRISAKTKGL-KKTPGQSWIQVKKKVYMFSAGNTQHAEL 673
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
+E+Y L L Q+++ Y+P+++
Sbjct: 674 EEVYRILKDLGLQMEVEGYIPDID 697
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++WT++++ +++ Q E ++ F M+ GI +A VLS L A D G+ IH
Sbjct: 235 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIH 294
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ GF+ +++ ++L+ +Y K G+++ + ++F +++ KN+ WN++I A G+
Sbjct: 295 GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCD 354
Query: 125 EALAMFDRM----IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
EA A+F ++ Y V PN V++ +V+ G EE F M
Sbjct: 355 EAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 87/152 (57%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W +++ + EAL+ + M+ G+S D T V+ ACA +G+ L R +H
Sbjct: 99 NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V+++GF ++++G+ L+ MY K G +D + VF ++ ++ WN+++ G A++ H
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
A MF M +EPN VT+ S+LS+ G
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCG 250
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW TM+ Y + A+ F++M G PD VT VLSAC+H G + GRE+
Sbjct: 475 KDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 534
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+++ F ++ + + +VD+ + G L + V + E N W +++ +H
Sbjct: 535 FDKMIK-EFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMH 593
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 24/230 (10%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-------FKLREKNLFCWN 111
L ++IH ++ G ++ + +V +YA G + + VF F NL WN
Sbjct: 49 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF----SNLLLWN 104
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
SI+ HG+ EAL ++ RM V +G TF V+ AC G R+ G
Sbjct: 105 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALM-----GSRKLCRSVHG 159
Query: 172 YSITPEVE---HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ + + H G ++ + K G ++DA ++ + + V W ++ G L+ +
Sbjct: 160 HVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR-SCVSWNTMVSGYALNYDCH 218
Query: 228 IAHIAVNEL--MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
A + LEPN + T LL+ +A + E ++ M+ GI
Sbjct: 219 GASEMFRMMGSAGLEPNLVTW-TSLLSSHARCGQHVETMELFGRMRMRGI 267
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ W+ MI+ Y+++ Q +EAL F+EM PDQ+TM +V+SAC+H+GAL
Sbjct: 314 MIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA 373
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH YV + GF + + +AL+DMYAKCG+L ++ VF + KN+ W+S+I A+H
Sbjct: 374 NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 433
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +F RM N+EPNGVTFI VL AC HAGLVEEG + F SM + I+P EH
Sbjct: 434 GNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREH 493
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +A L A+ELI + F PN +IWG+L+ C++H E+ A L+ LE
Sbjct: 494 YGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELE 553
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G +L N+YA+ RW +V IR +M GI K SS IE+ +V+ F +D+
Sbjct: 554 PDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKE-KASSRIEINNQVHMFMMADRY 612
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H SDEIY L ++ +LKL Y P +L
Sbjct: 613 HKQSDEIYEKLDEVVSKLKLVGYKPSTSGIL 643
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 37/258 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ++W +I Y QN + +AL F +M++S + PD V + TVLSAC H G L GR IH
Sbjct: 186 DAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIH 245
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLD------------------------------- 93
+V G+ ID ++ +AL++MYA CG++D
Sbjct: 246 EFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVK 305
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ E++L CW+++I G A EAL +FD M+ + P+ +T +SV+SAC+
Sbjct: 306 DARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACS 365
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
H G + + ++ + G+ V ++D+ +K G L A E+ + + N +
Sbjct: 366 HVGALAQANWIHTYVDRS-GFGRALSVN--NALIDMYAKCGNLVKAREVFENMP-RKNVI 421
Query: 212 IWGALLGGCKLHRNLEIA 229
W +++ +H N + A
Sbjct: 422 SWSSMINAFAMHGNADSA 439
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D+ + ++L A + + A + G EIH ++GF D +I + L+ MYA C + + L+F
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
K+ + WN II+G +G +AL +F+ M +++P+ V +VLSAC HAG +
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239
Query: 160 EGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
GR F+ GY+I ++ ++++ + G ++ A ++
Sbjct: 240 YGRTIHEFVKDN-GYAIDSHLQ--TALINMYANCGAMDLARKI 279
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +D ISW +MI Y+Q+ EAL+ F+ M ++ G+ + VT++ VL ACAH GAL
Sbjct: 2185 MEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 2244
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH V+++ + +V +G++++DMY KCG ++ + F +++EKN+ W +++ G +
Sbjct: 2245 GKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGM 2304
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A EAL +F +M+ V+PN +TF+SVL+AC+HAGLVEEG F +M Y I P +E
Sbjct: 2305 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 2364
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL +AG L +A LI+ K +P+ V+WG+LLG C++H+N+++ IA +L L
Sbjct: 2365 HYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 2424
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N GY LL N+YA+ RWA+V ++R+ MK + K PG S +E++ +V+ F DK
Sbjct: 2425 DPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKP-PGFSLVELKGRVHVFLVGDK 2483
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY L KL +L+ YVP + ++L
Sbjct: 2484 EHPHHEMIYKYLEKLTLELQKIGYVPNMTSVL 2515
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 127/199 (63%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P+++++SWT MI Y +N+Q EAL+ F M+ I P++ TM +++ AC +G L LG
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y ++ +I VY+G+AL+DMY+KCGS+ ++ VF + K+L WNS+I L VH
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M NV+P+ +TFI VL AC H V+EG F MT Y I P EH
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396
Query: 181 YGCMVDLLSKAGLLEDALE 199
Y CM +L +++ L++A +
Sbjct: 397 YECMTELYARSNNLDEAFK 415
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 17/235 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQ-------FREALDAFNEMKNSGISP-DQVTMATVLSACA 52
+P R+++SWT+MIT Y QN+Q F++ L+ E+++ P D V M +VLSAC+
Sbjct: 2076 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135
Query: 53 HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS 112
+ + +H +V++ GFD + +G+ L+D YAKCG S VF + EK+ WNS
Sbjct: 2136 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 2195
Query: 113 IIEGLAVHGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSM 168
+I A G + EAL +F M+ + V N VT +VL AC HAG + G+ + + M
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
Y++ ++D+ K G +E A + K + N W A++ G +H
Sbjct: 2256 DLEYNVCVGTS----IIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 2305
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 66/360 (18%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+W +I + N +AL + M GI+ D+ T V+ AC + ++DLG+ +H
Sbjct: 91 FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL--------- 117
+++ GF DV++ + L+D Y KCG +L VF K+R +N+ W ++I GL
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 118 -----------------AVHGF-----AHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
++G+ EAL +F RM EN+ PN T +S++ ACT
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 156 GLVEEGRRRFLSMTCGYSITPEVE---HYG-CMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G++ GR Y+I +E + G ++D+ SK G ++DA+E+ + + +
Sbjct: 271 GILTLGRG-----IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLP 324
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWA----EVTKIR 267
W +++ +H G LN+++E+ R +T I
Sbjct: 325 TWNSMITSLGVH---------------------GLGQEALNLFSEMERVNVKPDAITFIG 363
Query: 268 VAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
V + I+ G ++ + Y A + + E+Y+ + LDE K V L
Sbjct: 364 VLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSL 423
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 49/326 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW ++I ++ EAL AF+ ++ G+ P + + + +C+ L L GR H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
GF+ D+++ SAL+DMY+KCG L + +F ++ +N+ W S+I G + A
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098
Query: 125 EALAMFDRMIYE--------NVEPNGVTFISVLSACT-----------HAGLVEEGRRRF 165
AL +F + E NV + V +SVLSAC+ H +V++G
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158
Query: 166 LSM---------TCGYSITPEVE----------HYGCMVDLLSKAGLLEDALE----LIR 202
+ + CG + + + M+ + +++GL +ALE ++R
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-PNNSGYCTLLLNMYAEVSRWA 261
+ NAV A+L C L ++++ ++ N T +++MY + R
Sbjct: 2219 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 2278
Query: 262 EVTKIRVAMKELGIEKRCPGSSWIEM 287
K MKE ++ SW M
Sbjct: 2279 MAKKTFDRMKEKNVK------SWTAM 2298
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 5/173 (2%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C + L R+IH +++ G D + L+ +Y+ G + ++L+F++++
Sbjct: 33 LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
F WN II ++G + +AL ++ M+ + + + TF V+ ACT+ ++ G+
Sbjct: 90 TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
S+ Y + +V ++D K G AL++ + + N V W ++ G
Sbjct: 150 SLI-KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 90 GSLDRSLLV--FFKLREK-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
G D S L F+K +K N+ WNS+I LA G + EAL F + + P +F
Sbjct: 1960 GREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFP 2019
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSS 204
+ +C+ + GR +S + E + + ++D+ SK G L+DA L
Sbjct: 2020 CTIKSCSALCDLVSGR---MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 2076
Query: 205 KFQPNAVIWGALLGG 219
+ N V W +++ G
Sbjct: 2077 PLR-NVVSWTSMITG 2090
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 213/323 (65%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W+TMI+ Y+QN F +A++ F +++ G+ ++ M +V+S+CAHLGAL+LG
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H YV++ G +++ +G+ALVDMYA+CGS+D+++ VF L E++ W ++I GLA+H
Sbjct: 271 ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMH 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ +L F M+ + P +TF +VLSAC+H GLVE G + F SM + + P +EH
Sbjct: 331 GYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEH 390
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG LE+A + +PNA +WGALLG C++H+N EI L+ L
Sbjct: 391 YGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLL 450
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SGY LL N+YA W +VT++R MK G+ K+ PG S IE++ +V++F D S
Sbjct: 451 PQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGL-KKPPGHSLIELDGRVHKFTIGDSS 509
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
HP D+I ++ +++ A Y
Sbjct: 510 HPEMDKIERMWEEILMRIRAAGY 532
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 117/250 (46%), Gaps = 33/250 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + MI +S +K +A + + + G+ PD +T ++ +C L + +G + H
Sbjct: 83 NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAH 142
Query: 65 LYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLD 93
++++ GF+ DVY+ ++LV MYA KCG ++
Sbjct: 143 GHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVE 202
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ EKNL W+++I G A + +A+ +F + + V N +SV+S+C
Sbjct: 203 SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCA 262
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G R +T + +VD+ ++ G ++ A+ + + + + W
Sbjct: 263 HLGALELGERAH-DYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP-ERDTLSW 320
Query: 214 GALLGGCKLH 223
AL+ G +H
Sbjct: 321 TALIAGLAMH 330
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 103/233 (44%), Gaps = 12/233 (5%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL----VDMYAKCGSLDRSLLVFFKLR 103
L C+ L L + IH Y+++ DV+ S L VD + +D + +F +++
Sbjct: 24 LETCSDLTHLKI---IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
NLF +N++I G + +A + + + + P+ +TF ++ +CT + G +
Sbjct: 81 NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V +V + + G E A LI + + V W +++ G
Sbjct: 141 AH-GHIIKHGFEKDVYVQNSLVHMYATFGDTE-AATLIFQRMYYVDVVSWTSMIRGFNKC 198
Query: 224 RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
++E A +++ E N + T +++ YA+ + + + ++ ++ G+
Sbjct: 199 GDVESARKLFDQMP--EKNLVTWST-MISGYAQNNHFDKAVELFKVLQSQGVR 248
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 212/321 (66%), Gaps = 3/321 (0%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP R+ +SWT +I+ Y+++ + EA++ F M + PD+VT+ VLSACA LG+L+
Sbjct: 208 MPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLE 267
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG I YV G + V + +A++DMYAK G++ ++L VF + E+N+ W +II GLA
Sbjct: 268 LGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLA 327
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL MFDRM+ V+PN VTFI++LSAC+H G V+ G R F SM Y I P +
Sbjct: 328 THGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNI 387
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +AG L +A E+I+S F+ NA IWG+LL +H ++++ A+ +L+
Sbjct: 388 EHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIK 447
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEPNNSG LL N+Y+ + RW E +R MK +G+ K+ G S IE+E +VY+F + D
Sbjct: 448 LEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGV-KKLAGESSIEVENRVYKFISGD 506
Query: 299 KSHPASDEIYSSLSKLDEQLK 319
SHP ++I+ L ++D Q++
Sbjct: 507 LSHPQVEKIHELLQEMDLQIQ 527
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 55/256 (21%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
PD T VL + + GR++H + GFD V++ + L+ MY+ CG L + V
Sbjct: 114 PDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKV 173
Query: 99 FFKLREKNLFCWNS---------------------------------IIEGLAVHGFAHE 125
F ++R +++ WN+ +I G A G A E
Sbjct: 174 FDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASE 233
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG--- 182
A+ +F RM+ ENV+P+ VT ++VLSAC G +E G R C Y V+H G
Sbjct: 234 AIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGER-----ICSY-----VDHRGMNR 283
Query: 183 ------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K+G + ALE+ S + N V W ++ G H + A + + +
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALEVFESVN-ERNVVTWTTIITGLATHGHGAEALVMFDRM 342
Query: 237 MI--LEPNNSGYCTLL 250
+ ++PN+ + +L
Sbjct: 343 VKAGVKPNDVTFIAIL 358
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/331 (44%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +WT MI +Q+ +A F +M GI PD T ++LSACA GAL+
Sbjct: 685 MVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWV 744
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + + G D+ +G+ALV MYAKCGS+D + VF + E+++F W +I GLA H
Sbjct: 745 KEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQH 804
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +M E +PNG ++++VL+AC+HAGLV+EGRR+FLSMT Y I P +EH
Sbjct: 805 GRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEH 864
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLE+A I + +P+ WGALLG C + NLE+A A E + L+
Sbjct: 865 YTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLK 924
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++ LL N+YA +W + +R M+ GI K PG SWIE++ +++ F D S
Sbjct: 925 PKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKE-PGRSWIEVDNRIHSFVVGDTS 983
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY+ L+ L E+LK YVP+ +L
Sbjct: 984 HPESKEIYAQLNDLIERLKAKGYVPDTRLVL 1014
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++I WTTMI Y++ +A+ +++M+ P+++T ++L AC L G++I
Sbjct: 182 KNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKI 241
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++Q GF DV + +ALV+MY KCGS++ + L+F K+ E+N+ W +I GLA +G
Sbjct: 242 HAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRG 301
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA +F +M E PN T++S+L+A AG + E + S + ++
Sbjct: 302 QEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL-EWVKEVHSHAVNAGLALDLRVGNA 360
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + +K+G ++DA ++ + + W ++GG H
Sbjct: 361 LVHMYAKSGSIDDA-RVVFDGMTERDIFSWTVMIGGLAQH 399
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 5/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ R + +W MI +Q + REAL F +M+ G PD T +LSA AL+
Sbjct: 585 LSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWV 644
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + G +D+ +G+ALV Y+KCG++ + VF + E+N+ W +I GLA H
Sbjct: 645 KEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H+A + F +M+ E + P+ T++S+LSAC G + E + + + ++
Sbjct: 704 GCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGAL-EWVKEVHNHAVSAGLVSDLRV 762
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN-ELMI 238
+V + +K G ++DA + + + W ++GG H R LE V +
Sbjct: 763 GNALVHMYAKCGSIDDARSVF-DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEG 821
Query: 239 LEPNNSGYCTLL 250
+PN Y +L
Sbjct: 822 FKPNGYSYVAVL 833
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 151/297 (50%), Gaps = 18/297 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISWT MI + + +EA F +M+ G P+ T ++L+A A GAL+
Sbjct: 280 MVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWV 339
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + + G +D+ +G+ALV MYAK GS+D + +VF + E+++F W +I GLA H
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQH 399
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----ITP 176
G EA ++F +M PN T++S+L+A + + ++ + ++
Sbjct: 400 GRGQEAFSLFLQMQRNGCLPNLTTYLSILNA---SAIASTSALEWVKVVHKHAEEAGFIS 456
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++ ++ + +K G ++DA L+ + + W A++GG L +N H A
Sbjct: 457 DLRIGNALIHMYAKCGSIDDA-RLVFDGMCDRDVISWNAMMGG--LAQN-GCGHEAFTVF 512
Query: 237 MILE-----PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG-IEKRCPGSSWIEM 287
+ ++ P+++ Y + LLN + V ++ E G I GS++I M
Sbjct: 513 LQMQQEGLVPDSTTYLS-LLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHM 568
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 14/231 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVL--SACAHLGALD 58
M RDI SWT MI +Q+ + +EA F +M+ +G P+ T ++L SA A AL+
Sbjct: 381 MTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALE 440
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ +H + + GF D+ IG+AL+ MYAKCGS+D + LVF + ++++ WN+++ GLA
Sbjct: 441 WVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLA 500
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL-----VEEGRRRFLSMTCGYS 173
+G HEA +F +M E + P+ T++S+L+ TH V E + +
Sbjct: 501 QNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--THGSTDALEWVNEVHKHAVET----G 554
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR 224
+ + + + + G ++DA L + + W A++GG R
Sbjct: 555 LISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAAQQR 604
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 3/223 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW M+ +QN EA F +M+ G+ PD T ++L+ AL+
Sbjct: 484 MCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWV 543
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H + ++ G D +GSA + MY +CGS+D + L+F KL +++ WN++I G A
Sbjct: 544 NEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQ 603
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL++F +M E P+ TFI++LSA +E + T + V +
Sbjct: 604 RCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGN 663
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V SK G ++ A ++ + N W ++GG H
Sbjct: 664 --ALVHTYSKCGNVKYAKQVF-DDMVERNVTTWTMMIGGLAQH 703
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 138/280 (49%), Gaps = 11/280 (3%)
Query: 18 QNKQFREALDAFNEMK---NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI 74
Q A DA +K GI+ D + +L C + L +++H+ +++ G +
Sbjct: 92 QTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQ 151
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
++Y+ + L+ +Y +CG L + VF KL +KN++ W ++I G A +G A +A+ ++D+M
Sbjct: 152 NLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMR 211
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGL 193
E +PN +T++S+L AC ++ G++ + G+ VE +V++ K G
Sbjct: 212 QECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVE--TALVNMYVKCGS 269
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN-ELMILEPNNSGYCTLL- 250
+EDA +LI + N + W ++GG + R E H+ + + PN+ Y ++L
Sbjct: 270 IEDA-QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILN 328
Query: 251 LNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
N A W + L ++ R G++ + M K
Sbjct: 329 ANASAGALEWVKEVHSHAVNAGLALDLRV-GNALVHMYAK 367
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 221/335 (65%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS---PDQVTMATVLSACAHLGAL 57
MP R++ISW+ MI Y + Q++EAL F EM+ G++ P++ TM+ VL+AC LGAL
Sbjct: 125 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 184
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEG 116
+ G+ H Y+ + G +DV +G+AL+DMYAKCGS++++ VF L K++ W+++I G
Sbjct: 185 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 244
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA+HG A E + +F +MI + V PN VTF++V AC H GLV EG+ MT YSI P
Sbjct: 245 LAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIP 304
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++HYGCMVDL +AG +++A +++S +P+ ++WGALL G ++H ++E +A+ +L
Sbjct: 305 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL 364
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ LEP NSG LL N+YA+ RW +V +R M+ +GI K+ PG S IE+ +++F
Sbjct: 365 IELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI-KKVPGCSLIEVGGVLHEFFV 423
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP + +I+ L ++ E+LK+ YV + +L
Sbjct: 424 GDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVL 458
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 PARDIISWTTMITCYSQNK-----QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA 56
P + W T+I + Q + + F M+ G+ PD T +L + A
Sbjct: 20 PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
L LGR +H +++ G ID ++ ++L+ MY+ G +D + +F + E+N+ W+ +I G
Sbjct: 80 LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139
Query: 117 LAVHGFAHEALAMFDRMI---YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGY 172
G EALA+F M +V PN T VL+AC G +E G+ + CG
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM 199
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V ++D+ +K G +E A + + + + W A++ G +H
Sbjct: 200 PV--DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMH 248
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 212/324 (65%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW+ +I ++ Q EAL+ F M+ + + + VT+A+VLS CA L AL LGREIH
Sbjct: 375 NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIH 434
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V++ D ++ +G+ L++MY K GS LVF K+ K+L WN+++ G +HG
Sbjct: 435 GHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGE 494
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ FD+MI + EP+GVTF++VLSAC+HAGLV EGR F M + + P++EHY CM
Sbjct: 495 NAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACM 554
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL +AGLL++A ++++S +PNA +WGALL C++H+N E+A +++ L +
Sbjct: 555 VDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIA 614
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA RW + K+R++ K G+ K+ PG SWI++++KVY F+A + H
Sbjct: 615 GSYMLLSNIYAASGRWEDSAKVRISAKTKGL-KKTPGQSWIQVKKKVYMFSAGNTQHAEL 673
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
+E+Y L L Q+++ Y+P+++
Sbjct: 674 EEVYRILKDLGLQMEVEGYIPDID 697
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++WT++++ +++ Q E ++ F M+ GI +A VLS L A D G+ IH
Sbjct: 235 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIH 294
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ GF+ +++ ++L+ +Y K G+++ + ++F +++ KN+ WN++I A G+
Sbjct: 295 GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCD 354
Query: 125 EALAMFDRM----IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
EA A+F ++ Y V PN V++ +V+ G EE F M
Sbjct: 355 EAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 87/152 (57%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W +++ + EAL+ + M+ G+S D T V+ ACA +G+ L R +H
Sbjct: 99 NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V+++GF ++++G+ L+ MY K G +D + VF ++ ++ WN+++ G A++ H
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
A MF M +EPN VT+ S+LS+ G
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCG 250
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW TM+ Y + A+ F++M G PD VT VLSAC+H G + GRE+
Sbjct: 475 KDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 534
Query: 64 H---LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
+ ++ ++ Y + +VD+ + G L + V + E N W +++ +
Sbjct: 535 FDKMIKEFRVEPQMEHY--ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRM 592
Query: 120 H 120
H
Sbjct: 593 H 593
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 24/230 (10%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-------FKLREKNLFCWN 111
L ++IH ++ G ++ + +V +YA G + + VF F NL WN
Sbjct: 49 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECF----SNLLLWN 104
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
SI+ HG+ EAL ++ RM V +G TF V+ AC G R+ G
Sbjct: 105 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALM-----GSRKLCRSVHG 159
Query: 172 YSITPEVE---HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ + + H G ++ + K G ++DA ++ + + V W ++ G L+ +
Sbjct: 160 HVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR-SCVSWNTMVSGYALNYDCH 218
Query: 228 IAHIAVNEL--MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
A + LEPN + T LL+ +A + E ++ M+ GI
Sbjct: 219 GASEMFRMMGSAGLEPNLVTW-TSLLSSHARCGQHVETMELFGRMRMRGI 267
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 215/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW+ MI CY++N + EAL F EM + SP+ VTM +VL ACA L AL+
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ IH Y+++ G D + + SALV MY +CG L+ VF ++ ++++ WNS+I
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG+ +A+ +F+ M+ P VTF+SVL AC+H GLVEEG+R F +M + I P++
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L++A ++++ + +P +WG+LLG C++H N+E+A A L
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W EV +++ ++ G++K PG W+E+ RK+Y F + D
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK-LPGRCWMEVRRKMYSFVSVD 541
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P ++I++ L KL E +K Y+P+ + +L
Sbjct: 542 EFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVL 574
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 3 ARDIISWTTMITCYSQNKQFR---------EALDAFNEMKNSGISPDQVTMATVLSACA- 52
AR + T T Y N FR E L + +M G+ D+ T VL AC
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190
Query: 53 ---HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+ L G+EIH ++ + G+ VYI + LVDMYA+ G +D + VF + +N+
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGR----- 162
W+++I A +G A EAL F M+ E + PN VT +SVL AC +E+G+
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310
Query: 163 --RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
RR L SI P + +V + + G LE + + + V W +L+
Sbjct: 311 ILRRGLD-----SILPVIS---ALVTMYGRCGKLEVG-QRVFDRMHDRDVVSWNSLISSY 361
Query: 221 KLH 223
+H
Sbjct: 362 GVH 364
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
IS +I + + ++A+ ++ SP Q T ++ C H +L +H +
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D D ++ + L+ MY+ GS+D + VF K R++ ++ WN++ L + G E
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 127 LAMFDRMIYENVEPNGVTFISVLSAC 152
L ++ +M VE + T+ VL AC
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKAC 188
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 211/314 (67%), Gaps = 1/314 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+ MI Y+QN + EAL+ F MK++ I P+ VT+ +VLSACA LG+++ G
Sbjct: 289 MARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I YV G +VY+ SAL+ MY+KCG++ ++ +F KL +++ WNS+I GLA++
Sbjct: 349 ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAIN 408
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A+A+++RM V+PN +TF+ +++ACTHAG VE G F SM ++I+P +EH
Sbjct: 409 GFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEH 468
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C+VDL ++G L DA E I + +PN VIWG LL ++H N+E+A +A +L+ LE
Sbjct: 469 FACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELE 528
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG +L N+YA RW E K+R MK+ ++K SW+E+E +V++F D S
Sbjct: 529 PDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQK-AAAYSWVEVEDRVHKFLVGDTS 587
Query: 301 HPASDEIYSSLSKL 314
HP SDE+YS++ L
Sbjct: 588 HPRSDEVYSTIDGL 601
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 134/252 (53%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R I+SW MI+CY+QN + + F M++ P+++T+ATVLS CA LG L++G
Sbjct: 188 MRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMG 247
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I ++ + +A+++MY KCG++D LVF + +++ W+++I G A +
Sbjct: 248 LRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQN 307
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++EAL +F+ M ++PN VT +SVLSAC G VE G R S + V
Sbjct: 308 GRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETG-ERIGSYVESRGLISNVYV 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++ + SK G + A ++ Q + V W +++ G ++ E A N + +E
Sbjct: 367 ASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 425
Query: 241 --PNNSGYCTLL 250
PNN + L+
Sbjct: 426 VKPNNITFVGLM 437
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 124/280 (44%), Gaps = 43/280 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + IT YS+ EAL F M + + T+ + +CA L A+D+G
Sbjct: 56 IPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVG 115
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF-------------------- 100
+++H V++ GF V+ +AL++ YAK L + L+F
Sbjct: 116 KQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRS 175
Query: 101 -----------KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
K+R++++ WN++I A +G H+ +F RM E EPN +T +VL
Sbjct: 176 GEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVL 235
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
S C G +E G R + ++ + M+++ K G ++D L+ + +
Sbjct: 236 SICAKLGDLEMG-LRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDG-RLVFDHMARRD 293
Query: 210 AVIWGALLGG----------CKLHRNLEIAHIAVNELMIL 239
V W A++ G +L N++ A I N++ ++
Sbjct: 294 VVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLV 333
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 216/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SW T+I Y+ ++EAL F EM SG SP+ VTM +VL ACAHLGA+D+G
Sbjct: 277 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG 336
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + G + ++L+DMYAKCG ++ + VF + K+L WN++I G A
Sbjct: 337 RWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFA 396
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ A +F RM +EP+ +T + +LSAC+H+GL++ GR F S+T Y+ITP++
Sbjct: 397 MHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKL 456
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL AGL ++A E+I +P+ VIW +LL CK+H NLE+A +LM
Sbjct: 457 EHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLME 516
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP NSG LL N+YA RW +V +IR + G+ K+ PG S IE++ V++F D
Sbjct: 517 IEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGM-KKVPGCSSIEIDSVVHEFIIGD 575
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP S EIY L ++D L+ A +VP+ +L
Sbjct: 576 KLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVL 608
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 15/228 (6%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW MIT Y +N + EAL+ F EM + + PD+ T+ +VLSACA G+++LGREI
Sbjct: 178 RDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREI 237
Query: 64 HLYV-MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H V GF + I +A + +Y+KCG ++ + +F L K++ WN++I G
Sbjct: 238 HTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNL 297
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYSIT 175
EAL +F M+ PN VT +SVL AC H G ++ GR +R +T G ++
Sbjct: 298 YKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR 357
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G +E A ++ +S + W A++ G +H
Sbjct: 358 TS------LIDMYAKCGDIEAAHQVF-NSMMHKSLSSWNAMIFGFAMH 398
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 40/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM+ + + L+ + M + G P+ T +L +CA + GR+IH
Sbjct: 47 NLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIH 106
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLD-----------RSLL---------------- 97
VM++G ++D Y ++L+ MYA+ G L+ R ++
Sbjct: 107 AQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVR 166
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
VF + E+++ WN++I G + EAL +F M+ NV P+ T +SVLSAC
Sbjct: 167 SARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACA 226
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E GR + + ++ + L SK G +E A L + + V W
Sbjct: 227 QSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK-DVVSW 285
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ + T+L + A ++ RW V
Sbjct: 286 NTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHV 341
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF +E NL WN+++ GLA L M+ RM+ PN TF +L +C +
Sbjct: 39 VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98
Query: 158 VEEGRR---RFLSMTCGYSITPEVEHYG--CMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
EEGR+ + + + C E++ Y ++ + ++ G LEDA ++ S Q + V
Sbjct: 99 FEEGRQIHAQVMKLGC------ELDRYAHTSLISMYARNGRLEDARKVFDXSS-QRDVVS 151
Query: 213 WGALLGG 219
AL+ G
Sbjct: 152 CTALITG 158
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 213/324 (65%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D I+W MI+ Y Q Q REAL FN M+ G+ ++V+M +VLSAC+HLGALD G
Sbjct: 203 MSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H Y+ + + + +G+AL+DMYAKCG++++++ VF+ ++EKN++ W+S I GLA++
Sbjct: 263 RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMN 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + L +F M ++V+PN +TF+SVL C+ GLVEEGR+ F SM+ Y I P +EH
Sbjct: 323 GAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEH 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L++AL I S +P+ WGALL CK++RN+E+ +A +++ LE
Sbjct: 383 YGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELE 442
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G LL N+YA+ W V+ +R M G+ K+ PG S IE+ +V++F DKS
Sbjct: 443 AKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQ-PGCSVIEVGGEVHEFFVGDKS 501
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP EI L ++ +LKL+ YV
Sbjct: 502 HPRYAEIQVMLGEISRRLKLSGYV 525
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 49/254 (19%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDLGREI 63
+ ++ +MI +S++ + ++ + +S ++PD T ++ A L A G +
Sbjct: 74 LFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSV 133
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC-------------- 109
H ++ GF+ D ++ S L+ MYA+ G LD VF + E +L C
Sbjct: 134 HGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDV 193
Query: 110 -----------------WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
WN++I G G + EAL++F+ M E V+ N V+ +SVLSAC
Sbjct: 194 GFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSAC 253
Query: 153 THAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+H G +++GR R L MT ++D+ +K G + A+E+ K
Sbjct: 254 SHLGALDQGRWAHAYIERNKLRMTLTLGTA--------LIDMYAKCGNMNKAMEVFWGMK 305
Query: 206 FQPNAVIWGALLGG 219
+ N W + +GG
Sbjct: 306 -EKNVYTWSSAIGG 318
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 213/321 (66%), Gaps = 3/321 (0%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP R+ +SWT +I+ Y+++ + EA++ F M + PD+VT+ VLSACA LG+L+
Sbjct: 208 MPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLE 267
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG I YV G + V + +A++DMYAK G++ ++L VF + E+N+ W +II GLA
Sbjct: 268 LGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLA 327
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EALAMF+RM+ V PN VTFI++LSAC+H G V+ G+R F SM Y I P +
Sbjct: 328 THGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNI 387
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +AG L +A E+I+S F+ NA IWG+LL +H +LE+ A++EL+
Sbjct: 388 EHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIK 447
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEPNNSG LL N+Y+ + RW E +R MK +G+ K+ G S IE+E +VY+F + D
Sbjct: 448 LEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGV-KKMAGESSIEVENRVYKFISGD 506
Query: 299 KSHPASDEIYSSLSKLDEQLK 319
+HP + I+ L ++D Q++
Sbjct: 507 LTHPQVERIHEILQEMDLQIQ 527
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 108/256 (42%), Gaps = 55/256 (21%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD----- 93
PD T VL + + GR+IH V+ GFD V++ + L+ MY CG L
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKM 173
Query: 94 ----------------------------RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
RSLL +N W +I G A G A E
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG--- 182
A+ +F RM+ ENVEP+ VT ++VLSAC G +E G R C Y V+H G
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGER-----ICSY-----VDHRGMNR 283
Query: 183 ------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K+G + AL++ + N V W ++ G H + A N +
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 237 MI--LEPNNSGYCTLL 250
+ + PN+ + +L
Sbjct: 343 VKAGVRPNDVTFIAIL 358
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D + W MI Y+Q+ + EAL F M SG+ PD+VT+ VLSA A LG ++ G
Sbjct: 479 LPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESG 538
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ +H YV + V +G+AL+DMY KCGSL ++ VF + +K++ WN++I G A+
Sbjct: 539 KWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAM 598
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + +AL MF + + + P +TFI +L+AC+H+G+VEEGR F SM Y I P++E
Sbjct: 599 HGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIE 658
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGL+++A L++S K P+AV+W +LL C+LH+N+ + + L+
Sbjct: 659 HYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAK 718
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NSG LL N+YA V W EV ++R MK GI+K PG S IE++R+VY+F A D
Sbjct: 719 GLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKE-PGCSSIEIDREVYEFVAGDM 777
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +DEIY L K++ +K +VP+ E +L
Sbjct: 778 SHPRTDEIYVMLDKMNGLVKEHGHVPQTELVL 809
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 36/249 (14%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
I +T+ I +S AL ++M G+ P T++ L AC L GR +H Y
Sbjct: 355 IFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACR---GLSPGRALHGY 411
Query: 67 VMQIGFDIDVYIGSALVDMYAKCG--------------------------------SLDR 94
++ D Y+ +AL+ MYA+ G +LD
Sbjct: 412 AFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDD 471
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F L K+ CWN++I+G HG +EAL +F RM+ VEP+ VT + VLSA
Sbjct: 472 ARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQ 531
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G VE G+ + + V ++D+ K G L DA+++ + V+W
Sbjct: 532 LGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG-DKDIVVWN 590
Query: 215 ALLGGCKLH 223
A++ G +H
Sbjct: 591 AMINGYAMH 599
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW+ M+ Y Q REAL F++M+ G+ PD + VL+ACA LGAL+ G
Sbjct: 185 MPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQG 244
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + V++G+ALVDMYAKCG + + VF +++KN+ W ++I+GLA+H
Sbjct: 245 KWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMH 304
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++L +F +M V+P+ + FI L ACTH GLV++GR F SM Y I P++EH
Sbjct: 305 GRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEH 364
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL++ GLL +A +++ +P+A+IWGAL+ GC+ H+N+E+A + + LE
Sbjct: 365 YGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELE 424
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ SG LL N+Y+ R A +IR M+E G+EK PG S +E++ ++QF D S
Sbjct: 425 PDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEK-TPGCSNVEIKGVIHQFIVGDLS 483
Query: 301 HPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
HP +I + ++D +++L YVP+ + +L
Sbjct: 484 HPRIKDILTKWYEIDSRIRLEEGYVPDKKEVL 515
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 53 HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS 112
H G L + HL +++ +D + L+ +A+ G + + +F ++ E+N W++
Sbjct: 137 HAGLLGRLADAHL-LLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSA 195
Query: 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172
++ G G EAL +F +M + V P+ + VL+AC G +E+G+ GY
Sbjct: 196 MVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGK-----WVHGY 250
Query: 173 ----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+I V +VD+ +K G ++ +E+ K N + W ++ G +H
Sbjct: 251 LKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMK-DKNVLAWTTMIKGLAMH 304
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 211/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++WT M++ +QN EA F +MK + + D + ++L+ACA G+L LG
Sbjct: 307 MPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALG 366
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH YV ++ +A++DM+ KCG ++R+ VF ++ EK+ WN+II G A+
Sbjct: 367 KRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAM 426
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL F +M + P+ VT I+VLSACTH G VEEGR+ F +M Y I P++E
Sbjct: 427 HGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIE 486
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL + GL+E+A+ LI+S + PN VIWG+LL C+LH+N+E A IAVNEL L
Sbjct: 487 HYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKL 546
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N+G +L N+YAE +W+++ K R+ MK G +K GSSWIE++ ++F D+
Sbjct: 547 QPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSA-GSSWIELDEAFHEFTVGDR 605
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H SD+I + +L +K VP +L
Sbjct: 606 KHSDSDQISEMVDRLSSHVKDVGCVPTAHELL 637
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 13/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW + + + + A F+EM + D V+ TVL G ++
Sbjct: 214 MPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDK----DTVSWNTVLDGYTKAGKMEDA 269
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ Q + +V S +V Y K G ++ + ++F K+ KNL W ++ A +
Sbjct: 270 FEL----FQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQN 325
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G EA +F +M VE + +S+L+AC +G + G+R R++ +
Sbjct: 326 GLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTR---QLGRST 382
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
M+D+ K G + A + + + ++V W ++GG +H
Sbjct: 383 HVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMH 427
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 19/213 (8%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
T++ Y+ N A+ F+ M D T + ++ A + G L R +H +V++
Sbjct: 127 NTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFLIKALSSSGLTPL-RAVHSHVVK 181
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+G D Y+G+AL+D Y+K G + VF ++ ++ WNS + + G A M
Sbjct: 182 LGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRM 241
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDL 187
FD M + + V++ +VL T AG +E+ F M PE V + +V
Sbjct: 242 FDEM----PDKDTVSWNTVLDGYTKAGKMEDAFELFQCM-------PERNVVSWSTVVSG 290
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
K G +E A +I N V W ++ C
Sbjct: 291 YCKKGDIEMA-RVIFDKMPTKNLVTWTIMVSAC 322
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 221/335 (65%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS---PDQVTMATVLSACAHLGAL 57
MP R++ISW+ MI Y + Q++EAL F EM+ G++ P++ TM+ VL+AC LGAL
Sbjct: 156 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 215
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEG 116
+ G+ H Y+ + G +DV +G+AL+DMYAKCGS++++ VF L K++ W+++I G
Sbjct: 216 EHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISG 275
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA+HG A E + +F +MI + V PN VTF++V AC H GLV EG+ MT YSI P
Sbjct: 276 LAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIP 335
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++HYGCMVDL +AG +++A +++S +P+ ++WGALL G ++H ++E +A+ +L
Sbjct: 336 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL 395
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ LEP NSG LL N+YA+ RW +V +R M+ +GI K+ PG S IE+ +++F
Sbjct: 396 IELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI-KKVPGCSLIEVGGVLHEFFV 454
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP + +I+ L ++ E+LK+ YV + +L
Sbjct: 455 GDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVL 489
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 42/262 (16%)
Query: 2 PARDIISWTTMITCYSQNK-----QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA 56
P + W T+I + Q + + F M+ G+ PD T +L + A
Sbjct: 20 PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE- 115
L LGR +H +++ G ID ++ ++L+ MY+ CG+L + VF ++ + +L WNSII
Sbjct: 80 LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139
Query: 116 ----GLA---------------------VHGFAH-----EALAMFDRMI---YENVEPNG 142
GL ++G+ EALA+F M +V PN
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
T VL+AC G +E G+ + CG + +V ++D+ +K G +E A +
Sbjct: 200 FTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV--DVVLGTALIDMYAKCGSVEKATWVF 257
Query: 202 RSSKFQPNAVIWGALLGGCKLH 223
+ + + W A++ G +H
Sbjct: 258 SNLGPNKDVMAWSAMISGLAMH 279
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 210/326 (64%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++WT M++ +QN EA F +MK + + D + ++L+ACA G+L LG
Sbjct: 273 MPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALG 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH YV ++ +AL+DM+ KCG ++R+ VF ++ EK+ WN+II G A+
Sbjct: 333 KRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAM 392
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL F +M + P+ VT I+VLSACTH G VEEGRR F +M Y + P++E
Sbjct: 393 HGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIE 452
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL + GL+++A++LI+S + PN VIWG+LL C+LH+N+E A IAVNEL L
Sbjct: 453 HYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKL 512
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N+G +L ++YAE +W+++ K R+ MK G +K GSSWIE++ ++F D+
Sbjct: 513 QPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSS-GSSWIELDEAFHEFTVGDR 571
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
HP SD+I + +L K VP
Sbjct: 572 KHPDSDQISEMVDRLSSHAKDVDCVP 597
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 13/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW + + + + A F+EM + D V+ T+L G D+
Sbjct: 180 MPRRDVVSWNSAMAAMVRQGEVEGARRMFDEM----LEKDTVSWNTLLDGYTKAG--DVE 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
L+ Q + +V S +V Y K G ++ + ++F K+ KNL W ++ A +
Sbjct: 234 EAFKLF--QCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQN 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G EA +F +M +VE + +S+L+AC +G + G+R R++ +
Sbjct: 292 GLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTR---QLGRST 348
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A + + + ++V W ++GG +H
Sbjct: 349 HVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMH 393
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
T++ Y+ N REA+ F+ M + D T + ++ A + G L R +H +V++
Sbjct: 93 NTLLRAYALNALPREAVAVFSAMPHR----DSFTYSFLIKALSSAGVAPL-RAVHSHVVK 147
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+G D Y+G+AL+D Y+K G + VF ++ +++ WNS + + G A M
Sbjct: 148 LGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRM 207
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDL 187
FD M+ E + V++ ++L T AG VEE + F M PE V + +V
Sbjct: 208 FDEML----EKDTVSWNTLLDGYTKAGDVEEAFKLFQCM-------PERNVVSWSTVVSG 256
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
K G +E A +I N V W ++ C
Sbjct: 257 YCKKGDMEMA-RVIFDKMPTKNLVTWTIMVSAC 288
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 211/326 (64%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D + W +IT SQN + +EA+D F +M G+S D V+++ LSACA+L AL G
Sbjct: 336 MPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHG 395
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++ FD +V+ SAL+DMY KCG+L + VF +REKN WNSII H
Sbjct: 396 KAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSH 455
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +LA+F +M+ + ++P+ VTF+++LSAC HAG V++G + F MT Y I +EH
Sbjct: 456 GHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEH 515
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDL +AG L +A E I++ F P+ +WG LLG C++H N+E+A +A L+ L+
Sbjct: 516 YACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLD 575
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N++A+ +W V KIR MK+ G++K PG SWIE+ + + F A+D S
Sbjct: 576 PENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQK-VPGYSWIEVNKTTHMFVAADGS 634
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S +IYS L+ L +L+ Y P+
Sbjct: 635 HPESAQIYSVLNNLLLELRKEGYCPK 660
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 150/283 (53%), Gaps = 18/283 (6%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ T +I+ Y N +AL+ F + +SP+ VT+A+VL ACA L L+LG+E+H
Sbjct: 239 DIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELH 298
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G D ++GSA++DMYAKCG LD + +F ++ EK+ CWN+II + +G
Sbjct: 299 ANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQ 358
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M E + + V+ + LSAC + + G+ M G + EV +
Sbjct: 359 EAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKG-AFDSEVFAESAL 417
Query: 185 VDLLSKAGLLEDA---LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--IL 239
+D+ K G L A +++R + N V W +++ H +LE++ ++++ +
Sbjct: 418 IDMYGKCGNLSVARCVFDMMR----EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGI 473
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTK----IRVAMKELGIEKR 278
+P++ + T+L + +V K R +E GI R
Sbjct: 474 QPDHVTFLTIL----SACGHAGQVDKGIQYFRCMTEEYGIPAR 512
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 38/308 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D + W M+ + + + A+ F +M+N P+ +T A+VLS CA + G
Sbjct: 33 MPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFG 92
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V+ GF D + +ALV MY+K G L +L +F + + N+ WN +I G +
Sbjct: 93 NQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQN 152
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------------- 163
GF EA +F MI V P+ +TF S L + T + +++G+
Sbjct: 153 GFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLK 212
Query: 164 ----------RFLSMTCG-YSITPEVEHYGC--MVDLLSKAGLLEDALELIR---SSKFQ 207
R + M C + + V+ C ++ GL DALE+ R K
Sbjct: 213 SALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMS 272
Query: 208 PNAVIWGALLGGCKLHRNLEIA---HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVT 264
PNAV ++L C L + H + + + E + G + +++MYA+ R
Sbjct: 273 PNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVG--SAIMDMYAKCGRLDLAY 330
Query: 265 KIRVAMKE 272
+I M E
Sbjct: 331 QIFRRMPE 338
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+GF++D ++GS+L+ +YA+ G ++ + +F K+ K+ WN ++ G G + A+ +
Sbjct: 1 MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLL 188
F+ M +PN +TF SVLS C L E G + L ++CG+ P V + +V +
Sbjct: 61 FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVAN--ALVAMY 118
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
SK G L DAL+L + N V W ++ G
Sbjct: 119 SKFGQLSDALKLFNTMP-DTNVVTWNGMIAG 148
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD I W MI Y+Q+ E L F +M N+ + P++VT+ VLSAC GAL+ G
Sbjct: 32 LEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETG 91
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ G I+V +G++L+DMY+KCGSL+ + LVF ++ K++ WNS++ G A+H
Sbjct: 92 RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMH 151
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ +AL +F M +P +TFI VL+AC+HAGLV EG + F SM Y I P+VEH
Sbjct: 152 GFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEH 211
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMV+LL +AG LE+A EL+++ + + V+WG LLG C+LH N+ + L+
Sbjct: 212 YGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQN 271
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL N+YA W V ++R MKE G EK PG S IE+ KV++F A D
Sbjct: 272 LANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKE-PGCSSIEVNNKVHEFLAGDLR 330
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L +++ LK Y P+ + +L
Sbjct: 331 HPKSREIYEMLEEINGWLKTHGYTPQTDIVL 361
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 6/202 (2%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A++ YAK G +D + ++F L E++ CWN +I+G A HG +E L +F +M+ V
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
PN VT ++VLSAC G +E G R S I V ++D+ SK G LEDA
Sbjct: 70 PNEVTVLAVLSACGQTGALETG-RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA-R 127
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL--EPNNSGYCTLLLNMYAEV 257
L+ + V W +++ G +H + A E+ ++ +P + + +LN +
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIG-VLNACSHA 186
Query: 258 SRWAEVTKIRVAMK-ELGIEKR 278
+E K +MK E GIE +
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPK 208
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/325 (43%), Positives = 208/325 (64%), Gaps = 2/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+I SW +I Y+ N F E L +F M S + P+ T+ TVLSACA LGALDL
Sbjct: 132 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 191
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H+Y G +VY+G+AL+DMYAKCG ++ ++ VF + K+L WN++I GLA+
Sbjct: 192 GKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAM 251
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
H +AL +F +M +P+G+TFI +L ACTH GLVE+G F SM Y I P++E
Sbjct: 252 HSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIE 311
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+L++AG LE A+ +R + + VIW LLG C++++N+E+A +A+ L+ L
Sbjct: 312 HYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIEL 371
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N +L N+Y + RW +V +++VAM++ G K+ PG S IE+ V +F + D+
Sbjct: 372 EPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGF-KKLPGCSLIEVNDAVVEFYSLDE 430
Query: 300 SHPASDEIYSSLSKLDEQLKLASYV 324
HP +EIY L L + L+ Y+
Sbjct: 431 RHPQIEEIYGVLRGLVKVLRSFGYI 455
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 42/223 (18%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++ W M++ Y + EA F+EM N
Sbjct: 71 PERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR-------------------------- 104
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
DV + ++ YA G+++ +F ++ E+N+F WN++I G A +G
Sbjct: 105 -------------DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG 151
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E L F RM+ E +V PN T ++VLSAC G ++ G+ + + V
Sbjct: 152 LFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESS-GLKGNVYV 210
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G++E+A+ + R + + + W L+GG +H
Sbjct: 211 GNALMDMYAKCGIIENAISVFRGMDTK-DLISWNTLIGGLAMH 252
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPAR+ +SW+ M+ Y Q REAL F M+ + PD + VL+ACA GAL+ G
Sbjct: 169 MPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ G I+++ G+ALVDMY+KCG + ++ VF +++ KN+ W ++I+GLA+H
Sbjct: 229 KWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMH 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F +M + P+ + FI VL ACTHAGLV++GR F SM Y I P++EH
Sbjct: 289 GRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEH 348
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL++ G L +A E+I+ +P+A+IWGAL+ GC+ H+N+E A ++LE
Sbjct: 349 YGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLE 408
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ SG LL N+YA R A +IR M+E G++K PG S +E+ ++QF D S
Sbjct: 409 PDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDK-TPGCSTVEVNGVIHQFIVGDLS 467
Query: 301 HPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
HP +I S ++D +++L Y+P+++ +L
Sbjct: 468 HPRIKDILSKWYEIDTRIRLEEGYIPDMKEVL 499
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 111/251 (44%), Gaps = 42/251 (16%)
Query: 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH----LGALDLGREIHLY 66
+I S++ + AL + + +G+ P T+ ++L + A GA L +H +
Sbjct: 42 ALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTH 101
Query: 67 VMQIGFDIDVYIGSALVDM--------------------------------YAKCGSLDR 94
+++G D V + +AL+ + YA+ G L
Sbjct: 102 AVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLAD 161
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F ++ +N W++++ G G EAL +F RM E+V P+ + VL+AC
Sbjct: 162 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQ 221
Query: 155 AGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
G +E+G+ +L + I + +VD+ SK G ++ A+++ +++ N +
Sbjct: 222 HGALEQGKWVHGYLK---AHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYK-NVLA 277
Query: 213 WGALLGGCKLH 223
W ++ G +H
Sbjct: 278 WTTMIKGLAMH 288
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/332 (44%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWTT+I Y+Q + EA++ F +M+ + PD++ M VLSACA LGAL+LG
Sbjct: 214 MPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELG 273
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + G V + +AL+DMYAK G++ R+L VF +++K++ W+++I LA+H
Sbjct: 274 EWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALH 333
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ MF RM V PN VTF+++LSAC+H G+V+ GR F M Y I P++EH
Sbjct: 334 GLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEH 393
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL++AG L++A +L+ F+ NA+IWG+LL HR+ E+A +A+ L LE
Sbjct: 394 YGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLE 453
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N YA + +W E +R M+ G+ K+ PG S IE+ VY+F A D S
Sbjct: 454 PGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGV-KKAPGGSVIEINNIVYEFLAGDMS 512
Query: 301 HPASDEIYSSLSKLDEQLKLA-SYVPELEAML 331
EIY L K+ QLK+A SY E L
Sbjct: 513 DSQVHEIYHVLCKIILQLKMAGSYQEEWSKFL 544
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 33/250 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ + T I S+ A+ + ++ G+ PD ++ +VL A L A+++GR+IH
Sbjct: 86 DLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIH 145
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCG-------------------------------SLD 93
+ D+DV + ++L+ MY+ CG L
Sbjct: 146 TQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELK 205
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF ++ ++N+ W ++I G A HEA+ +F +M E VEP+ + ++VLSAC
Sbjct: 206 SARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACA 265
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G +E G + + + V Y ++D+ +K+G + ALE+ + K Q + + W
Sbjct: 266 DLGALELG-EWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMK-QKSVITW 323
Query: 214 GALLGGCKLH 223
++ LH
Sbjct: 324 STVIAALALH 333
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 8/236 (3%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
I + ++LS C H L +IH +++ D D S +D G +
Sbjct: 19 AIFTSSLQFTSLLSNCRHHLHL---YQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYA 75
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F +L +N+ I+ L+ A+ ++ R+ + + P+ + SVL A
Sbjct: 76 FSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKL 135
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
VE G R+ + T ++ +V ++ + S G + DA +L F+ + +W A
Sbjct: 136 SAVEVG-RQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFK-DVALWNA 193
Query: 216 LLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
++ G L+ A NE + N T L+ YA+ +R E ++ M+
Sbjct: 194 MVAGYVKVGELKSARKVFNE---MPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQ 246
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW TMI Q F+EA++ F M++ GI+ D+VTM V SAC +LGALDL
Sbjct: 433 MPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA 492
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + D+++G+ALVDM+A+CG ++ VF K+ ++++ W + I +A+
Sbjct: 493 KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAME 552
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +FD M+ + ++P+GV F+++L+A +H GLVE+G F SM Y I P+ H
Sbjct: 553 GNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVH 612
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL +AL LI S + +PN VIWG+LL C++H+N++IA A + L+
Sbjct: 613 YGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELD 672
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +G LL N+YA RW +V K+R+ +KE G K PGSS IE+ K+++F D+S
Sbjct: 673 PERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKM-PGSSSIEINGKIFEFTTGDES 731
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I L ++ +L+ YVP+L +L
Sbjct: 732 HPEMTHIEPMLKEICCRLRDIGYVPDLTNVL 762
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 10/233 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT++I Y++ ++EA+ F EM GI P+ VTM V+SACA L L LG
Sbjct: 200 MSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLG 259
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ + ++ +++ + +ALVDMY KCG++D++ +F + +KNL +N+I+
Sbjct: 260 EQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQ 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A E LA+ M+ P+ +T +S +SAC+ V G+ GY + +E
Sbjct: 320 GLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGK-----WCHGYVLRNGLEG 374
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ ++++ K G E A + V W +L+ G + ++E A
Sbjct: 375 WDNVCNAIINMYMKCGKQEMACRVF-DRMLNKTRVSWNSLIAGFVRNGDMESA 426
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 5/194 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
++++I +S +A+ F ++ G PD T VLSAC AL G ++H ++
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF+ D+++ ++L+ Y +CG +D VF K+ E+N+ W S+I G A G EA++
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH--YGCMVD 186
+F M+ + PN VT + V+SAC ++ G + TC + EV +VD
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQ---VCTCIGELELEVNALMVNALVD 283
Query: 187 LLSKAGLLEDALEL 200
+ K G ++ A ++
Sbjct: 284 MYMKCGAIDKARKI 297
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ + T+++ Y + RE L EM G PD++TM + +SAC+ L + G+
Sbjct: 304 KNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWC 363
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG-- 121
H YV++ G + + +A+++MY KCG + + VF ++ K WNS+I G +G
Sbjct: 364 HGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDM 423
Query: 122 -----------------------------FAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
EA+ +F M E + + VT + V SAC
Sbjct: 424 ESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASAC 483
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVE---HYG-CMVDLLSKAGLLEDALELIRSSKFQP 208
+ G ++ + GY ++ H G +VD+ ++ G + A+++ + +
Sbjct: 484 GYLGALDLAK-----WIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVF-NKMVKR 537
Query: 209 NAVIWGALLGGCKLHRN 225
+ W A +G + N
Sbjct: 538 DVSAWTAAIGAMAMEGN 554
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
+ ++S+I G + G ++A+ +F +++ P+ TF VLSACT + + E
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTE------- 157
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLE--------DALELIRSSKFQPNAVIWGALLGG 219
G+ + + G D+ + L+ D + + + N V W +L+GG
Sbjct: 158 ---GFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/322 (45%), Positives = 217/322 (67%), Gaps = 3/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP+R+++SWTTMI+ YS++K++ EAL F M + G+ P+ VT+A++ A A+LGAL++
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEI 234
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIEGLA 118
G+ + Y + GF ++Y+ +A+++MYAKCG +D + VF ++ +NL WNS+I GLA
Sbjct: 235 GQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLA 294
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG + L ++D+M+ E P+ VTF+ +L ACTH G+VE+GR F SMT ++I P++
Sbjct: 295 VHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKL 354
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AG L +A E+I+ +P++VIWGALLG C H N+E+A IA L
Sbjct: 355 EHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFA 414
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G +L N+YA +W V K+R MK I K G S+IE ++++F D
Sbjct: 415 LEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSA-GHSFIEEGGQLHKFIVED 473
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
+SHP S+EI++ L + E +KL
Sbjct: 474 RSHPESNEIFALLDGVYEMIKL 495
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 36/256 (14%)
Query: 2 PARDIISWTTMITCYSQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P + + +I YS + Q + + +++M P+Q T + SAC L + LG
Sbjct: 43 PKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLG 102
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSL---------------------------- 92
+ +H + ++ GF+ D++ +AL+DMY K G+L
Sbjct: 103 QMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARF 162
Query: 93 ---DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISV 148
D +L +F + +N+ W ++I G + EAL +F RM E + PN VT S+
Sbjct: 163 GDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASI 222
Query: 149 LSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
A + G +E G+R + G+ V + ++++ +K G ++ A ++
Sbjct: 223 FPAFANLGALEIGQRVEAYARKNGFFKNLYVSN--AVLEMYAKCGKIDVAWKVFNEIGSL 280
Query: 208 PNAVIWGALLGGCKLH 223
N W +++ G +H
Sbjct: 281 RNLCSWNSMIMGLAVH 296
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 214/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++D I W MI Y+Q+ + EAL F M SG+ PD+V + LSA A LG + G
Sbjct: 222 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESG 281
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R +H YV ++ +G+AL+DMY KCGSL+ ++ VF + +K++ WN++I G A+
Sbjct: 282 RWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAM 341
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + +AL MF ++ + + P +TFI +L+AC+H+GLV+EG + F SM Y+I P++E
Sbjct: 342 HGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIE 401
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGL+E+A L++S P+ V+W +LL C+LH+N+ + + L+
Sbjct: 402 HYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAG 461
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NSG LL N+YA V W EV ++R MK GI+K PG S IE+ RKVY+F A D
Sbjct: 462 GLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKE-PGCSAIEVGRKVYEFVAGDM 520
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +DEIY+ L K++ +K +VP+ E +L
Sbjct: 521 SHPRTDEIYAMLEKMNGIVKEQGHVPQTELVL 552
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 35/253 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + +T+ I +S AL +EM G+ P T+++ L AC L LGR
Sbjct: 94 PDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGR 150
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KCG 90
+H Y ++ D Y+ +AL+ MYA K G
Sbjct: 151 ALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMG 210
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+LD + +F + K+ CWN++I+G HG +EAL +F M+ V+P+ V I LS
Sbjct: 211 ALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALS 270
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
A G E GR + + ++D+ K G LEDA+ + S +
Sbjct: 271 AVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDI 329
Query: 211 VIWGALLGGCKLH 223
V+W A++ G +H
Sbjct: 330 VVWNAMINGYAMH 342
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 214/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++D I W MI Y+Q+ + EAL F M SG+ PD+V + LSA A LG + G
Sbjct: 221 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESG 280
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R +H YV ++ +G+AL+DMY KCGSL+ ++ VF + +K++ WN++I G A+
Sbjct: 281 RWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAM 340
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + +AL MF ++ + + P +TFI +L+AC+H+GLV+EG + F SM Y+I P++E
Sbjct: 341 HGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIE 400
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGL+E+A L++S P+ V+W +LL C+LH+N+ + + L+
Sbjct: 401 HYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAG 460
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NSG LL N+YA V W EV ++R MK GI+K PG S IE+ RKVY+F A D
Sbjct: 461 GLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKE-PGCSAIEVGRKVYEFVAGDM 519
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +DEIY+ L K++ +K +VP+ E +L
Sbjct: 520 SHPRTDEIYAMLEKMNGIVKEQGHVPQTELVL 551
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 35/253 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + +T+ I +S AL +EM G+ P T+++ L AC L LGR
Sbjct: 93 PDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGR 149
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KCG 90
+H Y ++ D Y+ +AL+ MYA K G
Sbjct: 150 ALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMG 209
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+LD + +F + K+ CWN++I+G HG +EAL +F M+ V+P+ V I LS
Sbjct: 210 ALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALS 269
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
A G E GR + + ++D+ K G LEDA+ + S +
Sbjct: 270 AVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDI 328
Query: 211 VIWGALLGGCKLH 223
V+W A++ G +H
Sbjct: 329 VVWNAMINGYAMH 341
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 208/325 (64%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++I+SW ++I+ +QN + +AL +F M + G PDQ T A LS+CAHL AL +G
Sbjct: 414 MKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG 473
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H VM+ G+ D+++ +AL+ MYAKCGS+ + L+F + ++ WNS+I A++
Sbjct: 474 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 533
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M E V P+ VTF+ +LSAC+H GL+++G + F M Y+I P EH
Sbjct: 534 GNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEH 593
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG LE+A +L+R K NA IWGALLG C++H NLE+A A +L+ E
Sbjct: 594 YACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFE 653
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ + LL NM AE RW EV ++R MKE G EK+ PG SWIE++ +V+ F + D +
Sbjct: 654 PHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQ-PGWSWIELQNRVHAFLSEDPA 712
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + E+ L L ++ + P
Sbjct: 713 HPRAVELCHILRSLTAHMRNTAKCP 737
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ + T MI+ Y QNK+ +A FN++ D V T+++ + G +D
Sbjct: 321 MPYRNVAAQTAMISGYVQNKRMDDARQIFNQIS----IRDVVCWNTMIAGYSQCGRMD-- 374
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+HL+ + DI + + +V YA+ G +D ++ +F +++EKN+ WNS+I GL +
Sbjct: 375 EALHLFKQMVKKDIVSW--NTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQN 432
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G +AL F M +E +P+ TF LS+C H ++ G++ L M GY+ V
Sbjct: 433 GSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVS 492
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
+ ++ + +K G + A EL+ + V W +L+ L+ N
Sbjct: 493 N--ALITMYAKCGSISSA-ELLFKDIDHFDVVSWNSLIAAYALNGN 535
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 42/266 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-----------------KNSGI------ 37
MP RD+ SWT MITCY++N + +A + FN + KN
Sbjct: 103 MPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRL 162
Query: 38 -----SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
+ D V+ ++L+ G + LG L + + DV + +VD + + G L
Sbjct: 163 FDAMPAKDLVSWNSMLTGYTRNGEMRLG----LQFFEEMAERDVVSWNLMVDGFVEVGDL 218
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ S F K+ N W +++ G A G EA +FD+M NV V + ++++A
Sbjct: 219 NSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV----VAWNAMIAAY 274
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
V+E F+ M SI+ + +++ + G L++A +L+ ++ N
Sbjct: 275 VQNCHVDEAISLFMEMPEKNSIS-----WTTVINGYVRMGKLDEARQLLNQMPYR-NVAA 328
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMI 238
A++ G ++ ++ A N++ I
Sbjct: 329 QTAMISGYVQNKRMDDARQIFNQISI 354
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
+ K G +D ++ VF + KN NS+I A +G +A +FD M N+
Sbjct: 22 ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI---- 77
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
V++ S+++A H VEE R+ F M T ++ + M+ ++ G L A L
Sbjct: 78 VSWNSMIAAYLHNDRVEEARQLFDKMP-----TRDLYSWTLMITCYTRNGELAKARNLFN 132
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIA 229
++ N V A++ G +R + A
Sbjct: 133 LLPYKWNPVCCNAMVAGYAKNRQFDEA 159
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W ++I +++N + EAL + EM + GI PD T+ ++LSACA +GAL LG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H+Y++++G +++ + L+D+YA+CG ++ + +F ++ +KN W S+I GLAV+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GF EA+ +F M E + P +TF+ +L AC+H G+V+EG F M Y I P +E
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL++AG ++ A E I+S QPN VIW LLG C +H + ++A A +++ L
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL 421
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+SG LL NMYA RW++V KIR M G+ K+ PG S +E+ +V++F DK
Sbjct: 422 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV-KKVPGHSLVEVGNRVHEFLMGDK 480
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SHP SD IY+ L ++ +L+ YVP++
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREI 63
++ W T+I Y++ A + EM+ SG + PD T ++ A + + LG I
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ GF +Y+ ++L+ +YA CG + + VF K+ EK+L WNS+I G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EALA++ M + ++P+G T +S+LSAC G + G+R + M +T +
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-KVGLTRNLHSSNV 262
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL ++ G +E+A L N+V W +L+ G
Sbjct: 263 LLDLYARCGRVEEAKTLF-DEMVDKNSVSWTSLIVG 297
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/331 (45%), Positives = 216/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW MI Y+Q+ F+EA++ F EM+ + + P+ VT+ +VL A + LGAL+LG
Sbjct: 219 MPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELG 278
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +HLY ++ +D +GSAL+DMYAKCGS++++L VF L ++N+ W++II GLA+H
Sbjct: 279 KWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMH 338
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A + L F+ M V P+ VT+I +LSAC+HAGLV EGR F M + P +EH
Sbjct: 339 GRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEH 398
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLLE++ ELI + +P+ VIW ALLG CK+H N+E+ LM L
Sbjct: 399 YGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELA 458
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG L N+YA + W V K+R+ MKE+ + K PG SWIE++ +++F D S
Sbjct: 459 PHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD-PGCSWIELDGVIHEFLVEDDS 517
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S +I+S L ++ L L Y P +L
Sbjct: 518 HPKSKKIHSMLQEMSRNLILVGYRPNTTQVL 548
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 51/293 (17%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
S+ T+I S++ +AL F EM ++ + P+ T +V AC L GR++H
Sbjct: 77 FSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHG 136
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK---------LREK----------- 105
++ G D D ++ S +V MY CG ++ + +F++ +R+K
Sbjct: 137 LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLW 196
Query: 106 -----------------NLF---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
NLF WN +I G A G EA+ +F M V
Sbjct: 197 NVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVP 256
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
PN VT +SVL A + G +E G+ L +I + ++D+ +K G +E AL+
Sbjct: 257 PNYVTLVSVLPAMSRLGALELGKWVHL-YAVRNNIGVDDVLGSALIDMYAKCGSIEKALQ 315
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGYCTLL 250
+ + N V W ++ G +H + + H E + P++ Y LL
Sbjct: 316 VFEGLP-KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLL 367
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 215/324 (66%), Gaps = 3/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R++ISWT M++ Y+QN + EA+ F EM + G+ P++VT+++VL ACA +GAL L
Sbjct: 177 MPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALAL 236
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR++ Y G +VY+ +ALV+MYAKCGS+ R+ +VF + ++++L WNS+I A
Sbjct: 237 GRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFA 296
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG E L +F ++ +P+G+TF+ V+ ACTH GLV+EG+ F SM + + P +
Sbjct: 297 VHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRI 356
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AGLL++A LI S +P+AVIWGALLG C H NLE+A +AV +LM
Sbjct: 357 EHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNLELAEVAVEKLMR 416
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+ +L N+YA +W V ++ +KE K+ G S+IE++ ++++F D
Sbjct: 417 LEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKD-HKKSAGYSFIELDGRMHKFLVED 475
Query: 299 KSHPASDEIYSSLSKLDEQLKLAS 322
KSHP + +Y +L + +KL +
Sbjct: 476 KSHPIYEMVYDTLDSITLIMKLVN 499
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D +AL+ YA+CG +D + +F + ++N+ W +++ G A +G EA+ F M
Sbjct: 150 DAAARNALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEM- 208
Query: 135 YE--NVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGCMVDLLSK 190
+E V PN VT SVL AC G + GR+ R+ G + V +V++ +K
Sbjct: 209 WEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYAR---GRGMLTNVYVANALVEMYAK 265
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G + A + R Q + W +++ +H
Sbjct: 266 CGSIRRAWMVFRGIGKQRDLCSWNSMIMAFAVH 298
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 211/326 (64%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++++++WT M++ +Q EA F +MK + + D + ++L+ACA G+L LG
Sbjct: 159 MPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLG 218
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH YV + ++ +AL+DM+ KCG ++R+ VF + +K+ WNSII G A+
Sbjct: 219 KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM 278
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M + P+ VT I+VLSACTH G V+EGRR F +M Y I P++E
Sbjct: 279 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIE 338
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL + GL+++A++LI+S ++PN VIWG+LL C+LH+N+E A IAVNEL L
Sbjct: 339 HYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKL 398
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N+G +L N+YAE +W+++ K R+ MK G +K GSSW+E+ ++F D+
Sbjct: 399 QPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQK-TAGSSWVELNETFHEFTVGDR 457
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
H SD+I + +L +K VP
Sbjct: 458 KHQDSDQISEMVDRLSSHVKHVGCVP 483
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T + + + F+EM D V+ T+L G ++
Sbjct: 66 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGEVEAA 121
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ Q + +V S +V Y K G L+ + ++F K+ KNL W ++ A
Sbjct: 122 FEL----FQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 177
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G EA +F +M +VE + +S+L+AC +G + G+R R++ ++
Sbjct: 178 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR---NLGRST 234
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A + + Q ++V W +++GG +H
Sbjct: 235 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 279
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D T + ++ A + G + R +H +V+++G D ++G+AL+D Y+K G + VF
Sbjct: 5 DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
++ E+++ WN+ + + G +FD M E + V++ ++L T AG VE
Sbjct: 64 DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM----PEKDTVSWNTILDGYTKAGEVE 119
Query: 160 EGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
F M PE V + MV K G LE A +I N V W ++
Sbjct: 120 AAFELFQRM-------PERNVVSWSTMVSGYCKKGDLEMA-RVIFDKMPSKNLVTWTIMV 171
Query: 218 GGC 220
C
Sbjct: 172 SAC 174
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 209/322 (64%), Gaps = 4/322 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ +W +I SQN F EA+ F M +G P+ T++ VLSAC HLG L +G
Sbjct: 211 MPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIG 270
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ IH Y + +GF V G L+DMY KCG+L+ + +F ++ +++L WNS+I LA
Sbjct: 271 KLIHCYAWRTCVGFGSSVLNG--LIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLA 328
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG + A+++F+ M E VEP+ VTF+ +L+ACTH G V+EG R F M + I PE+
Sbjct: 329 LHGHSKCAISVFNEMRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEI 388
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC++DLL +AG +DAL +I + + + V+WG+LL C++HR +E A +A+ +L+
Sbjct: 389 EHYGCIIDLLGRAGRFQDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRKLLE 448
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+PNN+ Y +L N+Y+E W EV K+R +KE I K+ PG SWIE++RK ++F + D
Sbjct: 449 LDPNNANYVVMLANVYSEGGLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKTHRFYSGD 508
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
+HP S+ IY +L L + L
Sbjct: 509 DAHPESENIYDTLEDLAASMDL 530
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ALV YA+ G + ++++F ++ E+++ WN+II G + +G EA+ +F RM+
Sbjct: 189 TALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFR 248
Query: 140 PNGVTFISVLSACTHAGLVEEGR--RRFLSMTC---GYSITPEVEHYGCMVDLLSKAGLL 194
PN T VLSAC H G+++ G+ + TC G S+ ++D+ K G L
Sbjct: 249 PNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNG------LIDMYGKCGNL 302
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLL 250
E A I + W +L+ LH + + A NE+ +EP+ + LL
Sbjct: 303 EGA-RWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVVTFVGLL 359
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 214/328 (65%), Gaps = 4/328 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISWT MI+ YSQ Q EAL+ F EM+ GI PD+VT+ VLSACA LGA DLG
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLG 366
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGL 117
+ + H Y+ F+ + + +A++DMYAKCGS+D +L +F ++ + K F +NS+I GL
Sbjct: 367 KRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGL 426
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A HG A+ +F +I ++P+ VTF+ VL AC H+GL+EEG++ F SM Y I P+
Sbjct: 427 AQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQ 486
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EHYGCMVDLL + G LE+A +L++ F+ N+VIW ALL C+ H N++I IA +L+
Sbjct: 487 MEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLL 546
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
+E + LL N+ A+ ++W E ++R M++ GI K PG S+IE+ +++F AS
Sbjct: 547 EMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP-PGWSYIELGGAIHRFVAS 605
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVP 325
DKSHP EI L + +LK A YVP
Sbjct: 606 DKSHPQGKEIELMLKDMAMRLKSAGYVP 633
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 37/284 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++S+ TMI Y++ Q AL F EM+NSGI PD+ T + S C+ L ++G++I
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQI 234
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAK--------------------------------C 89
H V + D ++ + SA+VDMYAK C
Sbjct: 235 HAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARC 294
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G ++ + +F + E+++ W ++I G + G EAL +F M ++P+ VT ++VL
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQP 208
SAC G + G+R + ++D+ +K G ++ ALE+ R K
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 414
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
++ +++ G H E A EL+ L+P+ + +L
Sbjct: 415 TGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVL 458
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 139/274 (50%), Gaps = 5/274 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREI 63
++ W TMI YS++ REA+ + M GI+P + T +L++CA L +L+ G E+
Sbjct: 74 NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEV 133
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ GF+ D+++ +AL+ +Y+ G+L+ + +F + ++L +N++I+G A
Sbjct: 134 HSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQP 193
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPEVEHYG 182
AL +F M + P+ TF+++ S C+ G++ + SI +
Sbjct: 194 ESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKS 253
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
+VD+ +K GL+ A + + +A W +++ G + +A N +
Sbjct: 254 AIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNH---MHER 310
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ T +++ Y++ + +E ++ M+ LGI+
Sbjct: 311 DVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGS---LDRSLLVFFKLREKNLFCWNSIIEG 116
G +IH + G ++ S L+ ++ GS LD S L+F ++ NLF WN++I G
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 117 LAVHGFAHEALAMFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
+ EA+ ++ MI + + PN TF +L++C R S+ G+ +
Sbjct: 85 YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA----------RLSSLEPGHEVH 134
Query: 176 PEVEHYGCMVDLLSKAGLL 194
+ +G DL + L+
Sbjct: 135 SHIIKHGFESDLFVRNALI 153
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 146/314 (46%), Positives = 207/314 (65%), Gaps = 1/314 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R I+SWTTMIT Y + + +ALD F EM+ GI PD++++ VL ACA LGAL++G
Sbjct: 203 MPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH+Y + GF I +AL++MYAKCG +D + +F +L EK++ W+++I GLA H
Sbjct: 263 KWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANH 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EA+ +F+ M V PN +TF+ VL AC+H GL +EG + F M+ Y I PE+EH
Sbjct: 323 GKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEH 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DLL ++G L AL+ I +P++ IW +LL C++HRNL+IA IAV +LM LE
Sbjct: 383 YGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELE 442
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SG LL NMYAE +W +V+ IR ++ I K+ PGSS IE+ V +F +SD S
Sbjct: 443 PEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRI-KKTPGSSSIEVNNVVQEFVSSDDS 501
Query: 301 HPASDEIYSSLSKL 314
P S E++ L L
Sbjct: 502 KPFSQEVFWILEGL 515
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 109/254 (42%), Gaps = 38/254 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM---KNSGISPDQVTMATVLSACAHLGALDLGR 61
+I ++ +I Y+ N+ A+ F +M + + PD+ T V+ +C + LG
Sbjct: 72 NIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGM 131
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H V + G D +AL+DMY K G L + VF ++ +++ WNS+I G G
Sbjct: 132 QVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLG 191
Query: 122 FAHEALAMFDRMIYEN-------------------------------VEPNGVTFISVLS 150
+ A +FD M +EP+ ++ I+VL
Sbjct: 192 QMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLP 251
Query: 151 ACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
AC G +E G +++ M + + ++++ +K G +++A L + +
Sbjct: 252 ACAQLGALEVG--KWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLF-DQLVEKD 308
Query: 210 AVIWGALLGGCKLH 223
+ W ++GG H
Sbjct: 309 VISWSTMIGGLANH 322
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 26/186 (13%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
T L C + L ++IH +V+++ ++ + ++D G + + L+F +L
Sbjct: 15 TSLKNCFKITQL---KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHP 71
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE---NVEPNGVTFISVLSACTHAGLVEEGR 162
N+F +N+II A + A+++F +M+ +V P+ TF V+ +CT
Sbjct: 72 NIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCT--------- 122
Query: 163 RRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
L G + V +G ++D+ +K G L +A ++ + + + W
Sbjct: 123 -GILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHR-DVISW 180
Query: 214 GALLGG 219
+L+ G
Sbjct: 181 NSLIFG 186
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 214/334 (64%), Gaps = 7/334 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SW +I Y+QN + EA+ F +K I P T +L+ACA+L L LG
Sbjct: 345 MMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R+ H +++ GF + D+++G++L+DMY KCG ++ LVF ++ E+++ WN++I
Sbjct: 405 RQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMI 464
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G+ AL +F +M+ +P+ VT I VLSAC+HAGLVEEGRR F SM +
Sbjct: 465 VGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGL 524
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +H+ CMVDLL +AG L++A +LI++ QP+ V+WG+LL CK+H N+E+
Sbjct: 525 APMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAE 584
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+LM ++P NSG LL NMYAE+ RW +V ++R M++ G+ K+ PG SWIE++ +V+ F
Sbjct: 585 KLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQ-PGCSWIEIQSRVHVF 643
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPELE 328
DK HP +I+ L L EQ+K A YVPE +
Sbjct: 644 MVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEAD 677
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 133/256 (51%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+I+SW ++ITCY QN +AL+ F M ++G+ PD++T+A+V+SACA A+ G
Sbjct: 212 MAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREG 271
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKL----------------- 102
+IH V++ + D+ +G+ALVDMYAKC ++ + LVF ++
Sbjct: 272 LQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYAR 331
Query: 103 --------------REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
EKN+ WN++I G +G EA+ +F + E++ P TF ++
Sbjct: 332 AASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNL 391
Query: 149 LSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRS 203
L+AC + ++ GR+ + L + E + + ++D+ K G++ED L+
Sbjct: 392 LNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGC-LVFE 450
Query: 204 SKFQPNAVIWGALLGG 219
+ + V W A++ G
Sbjct: 451 RMVERDVVSWNAMIVG 466
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 95/161 (59%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D SW M++ ++Q+ +F EAL F +M + ++ + + LSACA L L++G
Sbjct: 111 MPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMG 170
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH + + + +DVY+GSALVDMY+KCG + + F + +N+ WNS+I +
Sbjct: 171 IQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQN 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
G A +AL +F M+ VEP+ +T SV+SAC + EG
Sbjct: 231 GPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREG 271
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D A +L +C + R IH +++ F +++I + LVD Y KCG + + VF
Sbjct: 18 DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
++ ++N F +N+++ L G EA +F M EP+ ++ +++S E
Sbjct: 78 DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSM----PEPDQCSWNAMVSGFAQHDRFE 133
Query: 160 EGRRRFLSM 168
E R F+ M
Sbjct: 134 EALRFFVDM 142
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +WT MI+ +Q+ EA F +M GI PD T ++LSACA GAL+
Sbjct: 496 MVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWV 555
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + + G D+ +G+ALV MYAKCGS+D + VF + E++++ W +I GLA H
Sbjct: 556 KEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQH 615
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F +M E +PNG +F++VLSAC+HAGLV+EGRR+FLS+T Y I P +EH
Sbjct: 616 GRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEH 675
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG LE+A I + +P WGALLG C + NLE+A A E + L+
Sbjct: 676 YTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLK 735
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++ LL N+YA W + +R M+ GI K PG SWIE++ +++ F D S
Sbjct: 736 PKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKE-PGRSWIEVDNQIHSFVVGDTS 794
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY+ L L ++LK YVP+ +L
Sbjct: 795 HPESKEIYAKLKDLIKRLKAEGYVPDTRLVL 825
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 131/252 (51%), Gaps = 5/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ R++ +W MI +Q K REAL F +M+ G PD T +LSA AL+
Sbjct: 396 LAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWV 455
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y + G +D+ +G+ALV MYAKCG+ + VF + E+N+ W +I GLA H
Sbjct: 456 KEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQH 514
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G HEA ++F +M+ E + P+ T++S+LSAC G +E + S + ++
Sbjct: 515 GCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEW-VKEVHSHAVNAGLVSDLRV 573
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN-ELMI 238
+V + +K G ++DA + + + W ++GG H R L+ + V +L
Sbjct: 574 GNALVHMYAKCGSVDDARRVF-DDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEG 632
Query: 239 LEPNNSGYCTLL 250
+PN + +L
Sbjct: 633 FKPNGYSFVAVL 644
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 30/303 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISWT MI + + +EA F +M+ G P+ T ++L+A A GAL+
Sbjct: 91 MVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWV 150
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + + G +D+ +G+ALV MYAK GS+D + +VF + E+++F W +I GLA H
Sbjct: 151 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQH 210
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVL--SACTHAGLVE--------EGRRRFLSMTC 170
G EA ++F +M PN T++S+L SA T G +E G+ F+S
Sbjct: 211 GRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFIS--- 267
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
++ ++ + +K G ++DA L+ + + W A++GG L +N H
Sbjct: 268 ------DLRVGNALIHMYAKCGSIDDA-RLVFDGMCDRDVISWNAMIGG--LAQN-GCGH 317
Query: 231 IAVNELMILE-----PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG-IEKRCPGSSW 284
A + ++ P+++ Y + LLN + W V ++ E+G + GS++
Sbjct: 318 EAFTIFLKMQQEGFVPDSTTYLS-LLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAF 376
Query: 285 IEM 287
+ M
Sbjct: 377 VHM 379
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 117/212 (55%), Gaps = 2/212 (0%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
MI Y++ +A+ +++M+ G P+++T ++L AC +L G++IH +++Q G
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F DV + +ALV+MY KCGS+D + L+F K+ E+N+ W +I GLA +G EA F
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
+M E PN T++S+L+A AG +E + S + ++ +V + +K+
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEW-VKEVHSHAVNAGLALDLRVGNALVHMYAKS 179
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G ++DA ++ + + W ++GG H
Sbjct: 180 GSIDDA-RVVFDGMVERDIFSWTVMIGGLAQH 210
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 89/151 (58%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW MI +QN EA F +M+ G PD T ++L+ GA +
Sbjct: 295 MCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWV 354
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + +++G D+ +GSA V MY +CGS+D + L+F KL +N+ WN++I G+A
Sbjct: 355 KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQ 414
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
EAL++F +M E P+ TF+++LSA
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSA 445
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 213/325 (65%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SW TMI+ YS N F++A++ F EMK I P+ VT+ +VL A + LG+L+LG
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+HLY G ID +GSAL+DMY+KCG +++++ VF +L +N+ W+++I G A+H
Sbjct: 294 EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIH 353
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ F +M V P+ V +I++L+AC+H GLVEEGRR F M + P +EH
Sbjct: 354 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEH 413
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL ++GLL++A E I + +P+ VIW ALLG C++ N+E+ N LM +
Sbjct: 414 YGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMV 473
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG L NMYA W+EV+++R+ MKE I K PG S I+++ +++F D S
Sbjct: 474 PHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD-PGCSLIDIDGVLHEFVVEDDS 532
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + EI S L ++ ++L+LA Y P
Sbjct: 533 HPKAKEINSMLVEISDKLRLAGYRP 557
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 52/272 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE--ALDAFNEM-KNSGISPDQVTMATVLSACAHLGAL 57
MP R+ SW T+I +S++ + + A+ F EM + + P++ T +VL ACA G +
Sbjct: 85 MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF----------------- 100
G++IH ++ GF D ++ S LV MY CG + + ++F+
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 101 ----------------------------KLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
K+R++++ WN++I G +++GF +A+ +F
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 133 MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSKA 191
M ++ PN VT +SVL A + G +E G L + G I + ++D+ SK
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG--SALIDMYSKC 322
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G++E A+ + + N + W A++ G +H
Sbjct: 323 GIIEKAIHVFERLP-RENVITWSAMINGFAIH 353
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 21/157 (13%)
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM---FDRMIYENVEPNGVTFIS 147
LD + +F ++ ++N F WN+II G + +A+ ++ M E VEPN TF S
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 148 VLSACTHAGLVEEGRR-RFLSMTCGYS-----ITPEVEHY---GCMVD---LLSKAGLLE 195
VL AC G ++EG++ L++ G+ ++ V Y G M D L K + +
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 196 DALELIRSSKFQPNAVIWGAL------LGGCKLHRNL 226
D + + K V+W + LG CK R L
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARML 230
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++++++WT M++ +Q EA F +MK + + D + ++L+ACA G+L LG
Sbjct: 589 MPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLG 648
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH YV + ++ +AL+DM+ KCG ++R+ VF + +K+ WNSII G A+
Sbjct: 649 KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM 708
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M + P+ VT I+VLSACTH G V+EGRR F +M Y I P++E
Sbjct: 709 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIE 768
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL + GL+++A++LI+S ++PN VIWG+LL C+LH+N+E A IAVNEL L
Sbjct: 769 HYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKL 828
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N+G +L N+YAE +W+++ K R+ MK G +K GSSW+E+ ++F D+
Sbjct: 829 QPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTA-GSSWVELNETFHEFTVGDR 887
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H SD+I + +L +K VP +L
Sbjct: 888 KHQDSDQISEMVDRLSSHVKHVGCVPAGHELL 919
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T + + + F+EM D V+ T+L G ++
Sbjct: 496 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGEVEAA 551
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ Q + +V S +V Y K G L+ + ++F K+ KNL W ++ A
Sbjct: 552 FEL----FQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 607
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G EA +F +M +VE + +S+L+AC +G + G+R R++ ++
Sbjct: 608 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRK---RNLGRST 664
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A + + Q ++V W +++GG +H
Sbjct: 665 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 709
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
R+AL AF+ M D T + ++ A + G + R +H +V+++G D ++G+AL
Sbjct: 422 RDALAAFSAMPRR----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNAL 476
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
+D Y+K G + VF ++ E+++ WN+ + + G +FD M E +
Sbjct: 477 IDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM----PEKDT 532
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALEL 200
V++ ++L T AG VE F M PE V + MV K G LE A +
Sbjct: 533 VSWNTILDGYTKAGEVEAAFELFQRM-------PERNVVSWSTMVSGYCKKGDLEMA-RV 584
Query: 201 IRSSKFQPNAVIWGALLGGC 220
I N V W ++ C
Sbjct: 585 IFDKMPSKNLVTWTIMVSAC 604
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W ++I +++N + EAL + EM + GI PD T+ ++LSACA +GAL LG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H+Y++++G +++ + L+D+YA+CG ++ + +F ++ +KN W S+I GLAV+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GF EA+ +F M E + P +TF+ +L AC+H G+V+EG F M Y I P +E
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL++AG ++ A E I+S QPN VIW LLG C +H + ++A A +++ L
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL 421
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+SG LL NMYA RW++V KIR M G+ K+ PG S +E+ +V++F DK
Sbjct: 422 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV-KKVPGHSLVEVGNRVHEFLMGDK 480
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SHP SD IY+ L ++ +L+ YVP++
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREI 63
++ W T+I Y++ A + EM+ SG + PD T ++ A + + LG I
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ GF +Y+ ++L+ +YA CG + + VF K+ EK+L WNS+I G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EALA++ M + ++P+G T +S+LSAC G + G+R + M +T +
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-KVGLTRNLHSSNV 262
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL ++ G +E+A L N+V W +L+ G
Sbjct: 263 LLDLYARCGRVEEAKTLF-DEMVDKNSVSWTSLIVG 297
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 219/330 (66%), Gaps = 3/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W MIT Y+QN EA+ F+ M+ SG++PD++T+ VLSACA +GALD G
Sbjct: 288 MVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFG 347
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + Y + G D+Y+ +AL+DMYAKCGSLD +L VF + +KN WN++I LA H
Sbjct: 348 KWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFH 407
Query: 121 GFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G E+L++F RM E V PN ++FI VLSAC HAGLV+EGR+ F M+ + + P++
Sbjct: 408 GRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKI 467
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EH+ CMVDLL++AG + +A + I +P+ V+ GALLG C+ RN++++ ++ L+
Sbjct: 468 EHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLE 527
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP NSG + ++A + RW + ++RV M++ G+ K PG SWIE+E +V++F A D
Sbjct: 528 MEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTK-TPGCSWIEIENQVHEFHAGD 586
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELE 328
H S ++ ++ L+E++K+ Y P+++
Sbjct: 587 VLHFISQDMCQVINLLNEEMKVEGYGPKVD 616
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI+ YS+ +A+ F EM+++G PD++T+ ++L AC LG L LG I
Sbjct: 190 KDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWI 249
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V++ D++ ++GSAL+ MY KCG L + VF ++ +K++ WN++I G A +G +
Sbjct: 250 EGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVS 309
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ +F M V P+ +T + VLSAC G ++ G + + + ++
Sbjct: 310 DEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFG-KWLDTYASERGLQNDIYVSTA 368
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L+DAL + Q N V W A++ H
Sbjct: 369 LIDMYAKCGSLDDALRVFEDMP-QKNEVSWNAMISALAFH 407
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG 79
++F ++ + +MK+ GI P+ T V ACA+L L+ G+ H V++ G D ++
Sbjct: 105 QKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVR 164
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+L+ MY++CG L + VF ++ EK+L WNS+I G + G+A +A+ +F M E
Sbjct: 165 HSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFE 224
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----GCMVDLLSKAGLLE 195
P+ +T +S+L AC G + G S G+ + E++ ++ + K G L
Sbjct: 225 PDEMTLVSILGACGDLGDLGLG-----SWIEGFVVENEMDLNSFVGSALIGMYGKCGDLS 279
Query: 196 DALELIRSSKFQPNAVIWGALLGG 219
A + + + V W A++ G
Sbjct: 280 SARRVF-DRMVKKDVVTWNAMITG 302
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 212/324 (65%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W+ MI+ Y++N F +A++ + +++ G+ ++ M +V+++CAHLGAL+LG
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELG 264
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H Y+++ +++ +G+ALVDMYA+CGS+D+++ VF +L ++ W ++I G A+H
Sbjct: 265 ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMH 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +AL F RM + P +TF +VLSAC+H GLVE G F SM Y I P +EH
Sbjct: 325 GYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEH 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L +A + + +PNA IWGALLG C++H+N EIA A L+ L+
Sbjct: 385 YGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELK 444
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SGY LL N+YA ++W V IR MKE G+ K PG + EM+ KV++F DK+
Sbjct: 445 PEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVK-PPGYTLFEMDGKVHKFTIGDKT 503
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP +I ++ +++LA Y
Sbjct: 504 HPEIQQIERMWEEILGKIRLAGYT 527
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 119/256 (46%), Gaps = 33/256 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + + I +S +K ++ + + K +G+ PD +T ++ AC G+LD+G + H
Sbjct: 77 NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136
Query: 65 LYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLD 93
+++ GFD DVY+ ++LV MY+ K G +
Sbjct: 137 GQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVT 196
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F K+ EKNL W+ +I G A + F +A+ ++ + E V N +SV+++C
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCA 256
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G R +T + +VD+ ++ G ++ A+ + + +A+ W
Sbjct: 257 HLGALELGERAH-DYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR-DALSW 314
Query: 214 GALLGGCKLHRNLEIA 229
L+ G +H E A
Sbjct: 315 TTLIAGFAMHGYAEKA 330
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 31 EMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG 90
E+KN +S L +C L L + IH ++++ DV+ S L+ +
Sbjct: 13 ELKNPKLS--------FLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKN 61
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
LD + VF++++ NLF +NS I G + ++ + + + P+ +T+ ++
Sbjct: 62 LLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVK 121
Query: 151 ACTHAGLVEEG 161
ACT G ++ G
Sbjct: 122 ACTQKGSLDMG 132
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W ++I +++N + EAL + EM + GI PD T+ ++LSACA +GAL LG
Sbjct: 49 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 108
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H+Y++++G +++ + L+D+YA+CG ++ + +F ++ +KN W S+I GLAV+
Sbjct: 109 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 168
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GF EA+ +F M E + P +TF+ +L AC+H G+V+EG F M Y I P +E
Sbjct: 169 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 228
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL++AG ++ A E I+S QPN VIW LLG C +H + ++A A +++ L
Sbjct: 229 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL 288
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+SG LL NMYA RW++V KIR M G+ K+ PG S +E+ +V++F DK
Sbjct: 289 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV-KKVPGHSLVEVGNRVHEFLMGDK 347
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SHP SD IY+ L ++ +L+ YVP++
Sbjct: 348 SHPQSDAIYAKLKEMTGRLRSEGYVPQI 375
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
+ + LG IH V++ GF +Y+ ++L+ +YA CG + + VF K+ EK+L WNS+
Sbjct: 1 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G A +G EALA++ M + ++P+G T +S+LSAC G + G+R + M
Sbjct: 61 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-KVG 119
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+T + ++DL ++ G +E+A L N+V W +L+ G
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLF-DEMVDKNSVSWTSLIVG 164
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++++++WT M++ +Q EA F +MK + + D + ++L+ACA G+L LG
Sbjct: 282 MPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLG 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAV 119
+ IH YV + ++ +AL+DM+ KCG ++R+ VF + +K+ WNSII G A+
Sbjct: 342 KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM 401
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F +M + P+ VT I+VLSACTH G V+EGRR F +M Y I P++E
Sbjct: 402 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIE 461
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL + GL+++A++LI+S ++PN VIWG+LL C+LH+N+E A IAVNEL L
Sbjct: 462 HYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKL 521
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N+G +L N+YAE +W+++ K R+ MK G +K GSSW+E+ ++F D+
Sbjct: 522 QPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTA-GSSWVELNETFHEFTVGDR 580
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H SD+I + +L +K VP +L
Sbjct: 581 KHQDSDQISEMVDRLSSHVKHVGCVPAGHELL 612
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T + + + F+EM D V+ T+L G ++
Sbjct: 189 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGEVEAA 244
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ Q + +V S +V Y K G L+ + ++F K+ KNL W ++ A
Sbjct: 245 FEL----FQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 300
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G EA +F +M +VE + +S+L+AC +G + G+R R++ ++
Sbjct: 301 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRK---RNLGRST 357
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A + + Q ++V W +++GG +H
Sbjct: 358 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 402
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
R+AL AF+ M D T + ++ A + G + R +H +V+++G D ++G+AL
Sbjct: 115 RDALAAFSAMPRR----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNAL 169
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
+D Y+K G + VF ++ E+++ WN+ + + G +FD M E +
Sbjct: 170 IDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM----PEKDT 225
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALEL 200
V++ ++L T AG VE F M PE V + MV K G LE A +
Sbjct: 226 VSWNTILDGYTKAGEVEAAFELFQRM-------PERNVVSWSTMVSGYCKKGDLEMA-RV 277
Query: 201 IRSSKFQPNAVIWGALLGGC 220
I N V W ++ C
Sbjct: 278 IFDKMPSKNLVTWTIMVSAC 297
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 141/324 (43%), Positives = 205/324 (63%), Gaps = 4/324 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ +W +I +QN F EA+ F M + G P+ T++ +LSAC HLG L +G
Sbjct: 424 MPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIG 483
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ IH Y + +GF V G L+DMY KCG+L + +F ++ L WNS+I LA
Sbjct: 484 KVIHGYAWRSCVGFGSSVVNG--LIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLA 541
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG + A+A+F+ M E V+P+ VTF+ +L+ACTH G V+EG R F M + I PE+
Sbjct: 542 LHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEI 601
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDLL +AG +DA+ I K QP+ VIWG+LL C++HR+LE+A A+ L+
Sbjct: 602 EHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLD 661
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L P+N+ Y +L N+Y+E W EV K+R MKE K+ PG SWIE++RK +F + D
Sbjct: 662 LNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRFYSGD 721
Query: 299 KSHPASDEIYSSLSKLDEQLKLAS 322
HP S++IY +L KL +++ +
Sbjct: 722 DGHPESEDIYDTLDKLATTMEMQA 745
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 33/172 (19%)
Query: 23 REALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF--------- 72
R++L F M G +P+Q VL A +G + L R IH + + GF
Sbjct: 314 RDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIG-VQLVRSIHCHACKDGFYGHDFIRTS 372
Query: 73 ----------------------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
D +V +ALV YA+ G + ++++F ++ ++++ W
Sbjct: 373 LLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAW 432
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
N+II G +G EA+ +F RM+ E PNG T +LSAC H G+++ G+
Sbjct: 433 NAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGK 484
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 205/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI+SWTT++T YSQ+ EAL F M+ G +P+Q T ++VL +CA L L+ G
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 546
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + + G D + I SAL+DMYAKCGS+ + VF K+ ++ W +II G A H
Sbjct: 547 RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQH 606
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM ++ N VT + VL AC+H G+VEEG F M GY + PE+EH
Sbjct: 607 GLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEH 666
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL + G L+DA+E IR +PN ++W LLGGC++H N+E+ IA +++ +
Sbjct: 667 YACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIR 726
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P S LL N Y E + + +R MK+ G++K PG SWI ++ +V++F + D+
Sbjct: 727 PEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKE-PGYSWISVKGRVHKFYSGDQQ 785
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY L +L E++K YVP+L +L
Sbjct: 786 HPQKKEIYVKLEELREKIKAMGYVPDLRYVL 816
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 7/226 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT MI +++ F + F EM NSGI PD+ + ++ +C L +L+LG
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 240
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ GF +++ ++L++MYAK GS++ S VF + E N WN++I G +
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 300
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F RM PN T +SV A V G + + I V
Sbjct: 301 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG-KEVQNCASELGIEGNVLV 359
Query: 181 YGCMVDLLSKAGLLEDA-----LELIRSSKFQP-NAVIWGALLGGC 220
++D+ SK G L DA I P NA+I G GC
Sbjct: 360 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 405
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 13/242 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI+ YSQ+ +EAL+ + +M +GI+ D T +V +A A +L GR +H V+
Sbjct: 393 WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVL 452
Query: 69 QIGFDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G D+ V + +A+ D Y+KCG L+ VF ++ E+++ W +++ + EAL
Sbjct: 453 KCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 512
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
A F M E PN TF SVL +C +E GR+ + C + E ++D+
Sbjct: 513 ATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVH-GLLCKAGLDTEKCIESALIDM 571
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG----------CKLHRNLEIAHIAVNELM 237
+K G + +A ++ P+ V W A++ G +L R +E++ I N +
Sbjct: 572 YAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVT 630
Query: 238 IL 239
+L
Sbjct: 631 LL 632
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 133/304 (43%), Gaps = 31/304 (10%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGIS----PDQVT-MATVLSACAHLGALDLG 60
+++ + ++ SQ + + + N ++ GIS QV + VL CA G++
Sbjct: 78 VLTGSLAVSVPSQTAKKSKIVVGRNRPESIGISETYQQTQVQDLIDVLRDCAEKGSIREA 137
Query: 61 REIHLYVMQIGF---DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+ +H V++ F D+ V A +Y+KC + VF ++ ++N+F W +I G
Sbjct: 138 KAVHGLVLKSNFEDKDLMVLFNHA-AHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGS 196
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITP 176
HG + F M+ + P+ + +++ +C +E G+ + G++
Sbjct: 197 TEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHI 256
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
V ++++ +K G +ED+ + + N V W A++ GC + H+ +L
Sbjct: 257 FVST--SLLNMYAKLGSIEDSYWVFNMMT-EHNQVSWNAMISGCTSNG----LHLEAFDL 309
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTK---------IRVAMKELGIEKRC-PGSSWIE 286
+ N G CT NMY VS V K ++ ELGIE G++ I+
Sbjct: 310 FVRMKN--GACT--PNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALID 365
Query: 287 MERK 290
M K
Sbjct: 366 MYSK 369
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 216/324 (66%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ ++SW +++ +S NK+ EA F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 43 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 102
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG + SLLVF K+ +++ WN++I G A+HG
Sbjct: 103 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 162
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM ENV PN TF++VL AC+H GL ++G R F MT Y + P++EH+
Sbjct: 163 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 222
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++A++ I S FQ +AVIW LL CK+ +++EIA +A + +++L+P+
Sbjct: 223 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 282
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YAE +WA+V++ R +K+ G K+ PG SWIE++ +++ F DK+HP
Sbjct: 283 DSSVYILLSNVYAESGKWADVSRTRRLLKQ-GRLKKEPGCSWIEVQSEMHGFLVGDKAHP 341
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S E+Y L+ L ++KL+ Y P+
Sbjct: 342 RSGELYEMLNDLIGEMKLSGYEPD 365
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H V++ G D ++ S +VDMY KCG +D + + ++ + + WN+I+ G +++
Sbjct: 2 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 61
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV--EH 180
+ EA F M+ ++P+ TF +VL C + +E G++ G I E+ +
Sbjct: 62 SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ-----IHGQIIKQEMLDDE 116
Query: 181 Y--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
Y +VD+ +K G + D+L L+ + + V W A++ G LH L + + + E M
Sbjct: 117 YISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALH-GLGVEALRMFERMQ 174
Query: 239 LE---PNNSGYCTLL 250
E PN++ + +L
Sbjct: 175 KENVVPNHATFVAVL 189
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 214/330 (64%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ +EAL F EM G +P+ VTM ++L ACAHLGA+D+GR I
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333
Query: 64 HLYVMQI--GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G + + ++L+DMYAKCG+++ + VF + K+L N++I G A+HG
Sbjct: 334 HVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHG 393
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A A + RM + +EP+ +TF+ +LSAC+HAGL + GR+ F SMT Y I P++EHY
Sbjct: 394 RADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHY 453
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL ++GL ++A ELI S +P+ VIWG+LL CK+H+NLE+ + +LM +EP
Sbjct: 454 GCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEP 513
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N G LL N+YA +RW +V ++R + + G+ K+ PG S IE++ V++F DK H
Sbjct: 514 KNPGSYVLLSNIYATSARWDDVARVRTLLNDKGL-KKVPGCSSIEIDSMVHEFLIGDKFH 572
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L ++D L +V + +L
Sbjct: 573 PQNKEIYKMLEEIDSLLAETGFVSDTSEVL 602
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 133/230 (57%), Gaps = 17/230 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ +++EAL+ FNEM + PD+ TMATVLS C H G ++LG
Sbjct: 170 IPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELG 229
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++ GF ++ + +AL+D+Y+KCG ++R+ +F L+ K++ WN++I G A
Sbjct: 230 RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYI 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR ++ + S
Sbjct: 290 NHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTS 349
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALE----LIRSSKFQPNAVIWGALLGG 219
+ ++D+ +K G +E A + ++ S NA+I+G + G
Sbjct: 350 LQTS------LIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHG 393
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 144/294 (48%), Gaps = 39/294 (13%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW TMI ++ + AL+ + M + G+SP+ T + +CA A G++IH
Sbjct: 44 LSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQ 103
Query: 67 VMQIGFDIDVYIGSALVDMYAKC-------------------------------GSLDRS 95
+++ G +D+++ ++L+ MYA+ G++D++
Sbjct: 104 ILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKA 163
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F ++ K++ WN++I G A G EAL +F+ M+ +V+P+ T +VLS CTH+
Sbjct: 164 QKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHS 223
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
G VE G R+ S + ++ ++DL SK G +E A L +++ + + W
Sbjct: 224 GNVELG-RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNT 281
Query: 216 LLGGCKLHRNLEIAHIAVNELMIL--EPNNSGYCTLL---LNMYA-EVSRWAEV 263
L+GG + + A + E++ L PN+ ++L ++ A ++ RW V
Sbjct: 282 LIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHV 335
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 68 MQIGFDIDVYIGSALVD---MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++IG Y S L+D + L ++ VF ++E N WN++I G A+
Sbjct: 1 IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL ++ MI + PN TF + +C + +EG ++ + Y +T ++ + +
Sbjct: 61 SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEG-KQIHAQILKYGLTVDLHVHTSL 119
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+ + ++ G++EDA ++ +S + + V + A++ G N++ A +E+ I + +
Sbjct: 120 ISMYAQNGIVEDAHKVFDTSSHR-DVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVS- 177
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE----------KRCPGSSWIEMERKVYQF 294
+++ YAE+ R+ E ++ M ++ ++ C S +E+ R+++ +
Sbjct: 178 --WNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSW 235
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+++WT M+T Y+QN +AL+ F+ M G+ D+V++ +SACA LGAL
Sbjct: 235 PVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAA 294
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ + GF +V +GS LVDMYAKCG +D + VF+ ++EKN++ ++S+I GLA HG
Sbjct: 295 WVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHG 354
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A EA+A+F M+ NVEPN VTFI VL+AC+HAG+V EGR F M Y I P +H
Sbjct: 355 RASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADH 414
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGL+++AL+L+RS P+ +WGALLG C++H EIA + L LE
Sbjct: 415 YACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLE 474
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL N+ A +W EV+K+R+ M++ ++K S + + V+QF A D +
Sbjct: 475 PESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNA 534
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EI +L +L +LKL YVP L +++
Sbjct: 535 HPRTHEIKKALLELVAKLKLEGYVPILSSIV 565
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +++V Y + G + + VF + K++ W +++ G A + +AL +FDRM
Sbjct: 207 DVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMA 266
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
+ + V+ +SAC G + + ++ G+ V +VD+ +K GL
Sbjct: 267 ELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVG--SGLVDMYAKCGL 324
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI----LEPNNSGYCTL 249
+++A ++ + + N + +++ G H A IA+ + M+ +EPN+ + +
Sbjct: 325 IDEASKVFYGMQ-EKNVYTYSSMIAGLASHGRASEA-IALFKEMVNRANVEPNHVTFIGV 382
Query: 250 L 250
L
Sbjct: 383 L 383
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 216/324 (66%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ ++SW +++ +S NK+ EA F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 515 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 574
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG + SLLVF K+ +++ WN++I G A+HG
Sbjct: 575 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 634
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM ENV PN TF++VL AC+H GL ++G R F MT Y + P++EH+
Sbjct: 635 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 694
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++A++ I S FQ +AVIW LL CK+ +++EIA +A + +++L+P+
Sbjct: 695 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 754
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YAE +WA+V++ R +K+ G K+ PG SWIE++ +++ F DK+HP
Sbjct: 755 DSSVYILLSNVYAESGKWADVSRTRRLLKQ-GRLKKEPGCSWIEVQSEMHGFLVGDKAHP 813
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S E+Y L+ L ++KL+ Y P+
Sbjct: 814 RSGELYEMLNDLIGEMKLSGYEPD 837
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 14/257 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW +I QN + + + FNEM G+ PD T +VL ACA L +L+ G
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 471
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V++ G D ++ S +VDMY KCG +D + + ++ + + WN+I+ G +++
Sbjct: 472 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 531
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
+ EA F M+ ++P+ TF +VL C + +E G++ G I E+
Sbjct: 532 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ-----IHGQIIKQEMLD 586
Query: 179 EHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ Y +VD+ +K G + D+L L+ + + V W A++ G LH L + + + E
Sbjct: 587 DEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALH-GLGVEALRMFER 644
Query: 237 MILE---PNNSGYCTLL 250
M E PN++ + +L
Sbjct: 645 MQKENVVPNHATFVAVL 661
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 89/163 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +++ Y Q F+E++D F EM G+SPD+ T A +L +C+ L L LG
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G +IDV GSALVDMY KC SLD +L F+ + E+N W + I G +
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQN 228
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
L +F M + + ++ S +C + GR+
Sbjct: 229 EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQ 271
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW I QN+Q+ L+ F EM+ G+ Q + A+ +CA + L+ G
Sbjct: 210 MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG 269
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ F D +G+A+VD+YAK SL + FF L + N+++ GL
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 329
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-GLVEEGRRRFLSMTCGYSITPEVE 179
G EA+ +F MI ++ + V+ V SAC G + + L++ G+ + V
Sbjct: 330 GLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN 389
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ ++DL K L +A + + K Q ++V W A++ + + + + + NE++
Sbjct: 390 N--AVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446
Query: 239 -LEPNNSGYCTLL 250
++P++ Y ++L
Sbjct: 447 GMKPDDFTYGSVL 459
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 4/229 (1%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
EA+ F M S I D V+++ V SACA G+++H ++ GFD+D+ + +A++
Sbjct: 334 EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVL 393
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
D+Y KC +L + L+F +++K+ WN+II L +G + + F+ M+ ++P+
Sbjct: 394 DLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDF 453
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
T+ SVL AC +E G + + +VD+ K G++++A +L
Sbjct: 454 TYGSVLKACAALRSLEYG-LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDR 512
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
Q V W A+L G L++ E A +E+ M L+P++ + T+L
Sbjct: 513 IGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVL 560
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ ++ Y+ G + ++ +F + + ++ WN+++ G G E++ +F M V
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146
Query: 140 PNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
P+ TF +L +C+ + G + L++ G I +V +VD+ K L+DAL
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEI--DVRTGSALVDMYGKCRSLDDAL 204
Query: 199 ELIRSSKFQPNAVIWGALLGGC 220
+ N V WGA + GC
Sbjct: 205 CFFYGMP-ERNWVSWGAAIAGC 225
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 214/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++WT MI+ Y+Q A F +M+++G+ P+++TM ++LS CA GALD+G
Sbjct: 293 MKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG 352
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H Y+ + G ++DV + +AL+DMYAKCG + + +F + ++++ WN ++ G +H
Sbjct: 353 KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMH 412
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +AL +F M V+PN +TFI L AC+HAGLV EG+ F M + + P+VEH
Sbjct: 413 GYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEH 472
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL++A ++I S PN IWGA+L CK+H+N + +A EL+ LE
Sbjct: 473 YGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALE 532
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY L+ N+YA +RW +V +R A+K+ GI+K PG S IE+ V+ F D +
Sbjct: 533 PQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKE-PGMSSIEVNGLVHDFKMGDTA 591
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++I L+++ ++LK A Y+P+ +L
Sbjct: 592 HPLIEKISEMLAEMSKKLKEAGYLPDTSVVL 622
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 4/242 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R I+SWT MI Y + E F M + P+ +TM +++ +C +GA+ LG+ +
Sbjct: 195 RSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRL 254
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ GF + + + +ALVDMY KCG + + +F ++ K++ W ++I A
Sbjct: 255 HAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCI 314
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A +F +M V PN +T +S+LS C G ++ G + F + + +V
Sbjct: 315 DYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTA 373
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL--EP 241
++D+ +K G + A L S + W ++ G +H E A E+ L +P
Sbjct: 374 LIDMYAKCGDISGAQRLF-SEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKP 432
Query: 242 NN 243
N+
Sbjct: 433 ND 434
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 26/218 (11%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
R AL+ + M+ I D + +VL AC+ + +G+EIH + ++ G DV++ +AL
Sbjct: 91 RYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNAL 150
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV--HGFAHEALA------------ 128
+ MY++CGSL + L+F K+ E+++ W+++I +GF+ ++
Sbjct: 151 MQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRC 210
Query: 129 --------MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+F RMI ENV PN +T +S++ +C G V+ G+R + G+ ++ +
Sbjct: 211 NDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA 270
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+VD+ K G + A + S K + + W A++
Sbjct: 271 --TALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMI 305
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARD++SW +MI+CY Q EAL +++M+ S + D T+ ++LS+CAH+GAL +G
Sbjct: 187 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + ++++G+AL+DMYAKCGSL +L +F + ++++F WNS+I G VH
Sbjct: 247 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ F M+ V PN +TF+ +L C+H GLV+EG + F M+ +++ P ++H
Sbjct: 307 GRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L++ALE+IRSS Q + V+W LLG CK+HRN+EI +A+ L+ L
Sbjct: 367 YGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+G C LL +YAE V ++R ++ GI K PG SWIE+ +V++F DKS
Sbjct: 427 SLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGI-KTTPGWSWIEVGDQVHRFVVDDKS 485
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L ++ + L Y E +++
Sbjct: 486 HPDSREIYRKLEEVIHRASLVGYAMEESSLV 516
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 11/250 (4%)
Query: 8 SWTTMITCYSQNKQ--FREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+W +MI +SQ+ +A+ +N M S PD T + +L AC RE+H
Sbjct: 90 AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVH 149
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ G+D DV + + L+ YA G ++ + VF ++ ++L WNS+I G
Sbjct: 150 GFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 209
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYG 182
EAL M+D+M NV +G T +S+LS+C H G + G + RF + +
Sbjct: 210 EALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER---RLVENIFVGN 266
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
++D+ +K G L AL + S + + W +++ G +H + A +++ +
Sbjct: 267 ALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 325
Query: 241 PNNSGYCTLL 250
PN+ + LL
Sbjct: 326 PNSITFLGLL 335
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLR 103
++L C + L +IH +++ G+ + I L++ A GSL + LVF ++
Sbjct: 28 SLLQGCNSMRKL---HKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIH 84
Query: 104 EKNLFCWNSIIEGL--AVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEE 160
WNS+I G + +A+ ++ M+ + P+ TF +L AC A EE
Sbjct: 85 NPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAK--EE 142
Query: 161 GRRR 164
G+ R
Sbjct: 143 GKCR 146
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 216/327 (66%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT++I +QN + EAL+ F EM+ +G+ P++VT+ ++L AC ++ AL GR H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTH 411
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ +++ DV++GSAL+DMYAKCG + S +VF + KNL CWNS++ G ++HG A
Sbjct: 412 GFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAK 471
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +++F+ ++ ++P+ ++F S+LSAC GL +EG + F M+ Y I P +EHY CM
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCM 531
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V+LL +AG L++A +LI+ F+P++ +WGALL C+L N+++A IA +L LEP N
Sbjct: 532 VNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENP 591
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G L+ N+YA W EV IR M+ LG++K PG SWI+++ KVY A DKSHP
Sbjct: 592 GTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKN-PGCSWIQVKNKVYTLLACDKSHPQI 650
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
D+I + ++ E+++ + + P L+ L
Sbjct: 651 DQITEKMDEISEEMRKSGHRPNLDFAL 677
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 45/258 (17%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I+SW +++ ++++ +EA+ F +M + G PDQVT+++VL + L++GR+IH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------------D 93
YV++ G D + SA++DMY K G + D
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335
Query: 94 RSLLVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++L +F +E+ N+ W SII G A +G EAL +F M V+PN VT S+L
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSIT----PEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
AC + + GR T G+++ +V ++D+ +K G ++ + +++ +
Sbjct: 396 PACGNIAALGHGRS-----THGFAVRVHLLDDVHVGSALIDMYAKCGRIKMS-QIVFNMM 449
Query: 206 FQPNAVIWGALLGGCKLH 223
N V W +L+ G +H
Sbjct: 450 PTKNLVCWNSLMNGYSMH 467
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 82/318 (25%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + S++++I ++ K F +++ F+ M + G+ PD + + CA L A G
Sbjct: 76 IPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAG 135
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------------- 105
++IH G D+D ++ +L MY +CG + + VF ++ EK
Sbjct: 136 KQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARK 195
Query: 106 --------------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
N+ WN I+ G G+ EA+ MF +M + P+ VT
Sbjct: 196 GCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTV 255
Query: 146 ISVLSACTHAGLVEEGR--------RRFLSMTCGYSITPEVEHYG--------------- 182
SVL + + + GR + L C I+ ++ YG
Sbjct: 256 SSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKC--VISAMLDMYGKSGHVYGIIKLFDEF 313
Query: 183 ---------CMVDLLSKAGLLEDALE---LIRSSKFQPNAVIWGALLGGC---------- 220
+ LS+ GL++ ALE L + K + N V W +++ GC
Sbjct: 314 EMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEAL 373
Query: 221 KLHRNLEIAHIAVNELMI 238
+L R +++A + N + I
Sbjct: 374 ELFREMQVAGVKPNRVTI 391
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++ W +++ YS + + +E + F + + + PD ++ ++LSAC +G D G
Sbjct: 449 MPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+ ++ + G + S +V++ + G L +
Sbjct: 509 WKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARD++SW +MI+CY Q EAL +++M+ S + D T+ ++LS+CAH+GAL +G
Sbjct: 169 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + ++++G+AL+DMYAKCGSL +L +F + ++++F WNS+I G VH
Sbjct: 229 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ F M+ V PN +TF+ +L C+H GLV+EG + F M+ +++ P ++H
Sbjct: 289 GRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKH 348
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L++ALE+IRSS Q + V+W LLG CK+HRN+EI +A+ L+ L
Sbjct: 349 YGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG 408
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+G C LL +YAE V ++R ++ GI K PG SWIE+ +V++F DKS
Sbjct: 409 SLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGI-KTTPGWSWIEVGDQVHRFVVDDKS 467
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L ++ + L Y E +++
Sbjct: 468 HPDSREIYRKLEEVIHRASLVGYAMEESSLV 498
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 11/250 (4%)
Query: 8 SWTTMITCYSQNKQ--FREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+W +MI +SQ+ +A+ +N M S PD T + +L AC RE+H
Sbjct: 72 AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVH 131
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ G+D DV + + L+ YA G ++ + VF ++ ++L WNS+I G
Sbjct: 132 GFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 191
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYG 182
EAL M+D+M NV +G T +S+LS+C H G + G + RF + +
Sbjct: 192 EALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER---RLVENIFVGN 248
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
++D+ +K G L AL + S + + W +++ G +H + A +++ +
Sbjct: 249 ALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 307
Query: 241 PNNSGYCTLL 250
PN+ + LL
Sbjct: 308 PNSITFLGLL 317
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLR 103
++L C + L +IH +++ G+ + I L++ A GSL + LVF ++
Sbjct: 10 SLLQGCNSMRKL---HKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIH 66
Query: 104 EKNLFCWNSIIEGL--AVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEE 160
WNS+I G + +A+ ++ M+ + P+ TF +L AC A EE
Sbjct: 67 NPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAK--EE 124
Query: 161 GRRR 164
G+ R
Sbjct: 125 GKCR 128
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 216/324 (66%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ ++SW +++ +S NK+ EA F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 515 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 574
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG + SLLVF K+ +++ WN++I G A+HG
Sbjct: 575 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 634
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM ENV PN TF++VL AC+H GL ++G R F MT Y + P++EH+
Sbjct: 635 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 694
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++A++ I S FQ +AVIW LL CK+ +++EIA +A + +++L+P+
Sbjct: 695 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 754
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YAE +WA+V++ R +K+ G K+ PG SWIE++ +++ F DK+HP
Sbjct: 755 DSSVYILLSNVYAESGKWADVSRTRRLLKQ-GRLKKEPGCSWIEVQSEMHGFLVGDKAHP 813
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S E+Y L+ L ++KL+ Y P+
Sbjct: 814 RSGELYEMLNDLIGEMKLSGYEPD 837
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 14/257 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW +I QN + + + FNEM G+ PD T +VL ACA L +L+ G
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 471
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V++ G D ++ S +VDMY KCG +D + + ++ + + WN+I+ G +++
Sbjct: 472 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 531
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
+ EA F M+ ++P+ TF +VL C + +E G++ G I E+
Sbjct: 532 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ-----IHGQIIKQEMLD 586
Query: 179 EHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ Y +VD+ +K G + D+L L+ + + V W A++ G LH L + + + E
Sbjct: 587 DEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALH-GLGVEALRMFER 644
Query: 237 MILE---PNNSGYCTLL 250
M E PN++ + +L
Sbjct: 645 MQKENVVPNHATFVAVL 661
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 1/197 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +++ Y Q F+E++D F EM G+SPD+ T A +L +C+ L L LG
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G +IDV GSALVDMY KC SLD +L F+ + E+N W + I G +
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQN 228
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
L +F M + + ++ S +C + G R+ + + +
Sbjct: 229 EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG-RQLHAHAIKNKFSSDRVV 287
Query: 181 YGCMVDLLSKAGLLEDA 197
+VD+ +KA L DA
Sbjct: 288 GTAIVDVYAKANSLTDA 304
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW I QN+Q+ L+ F EM+ G+ Q + A+ +CA + L+ G
Sbjct: 210 MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG 269
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ F D +G+A+VD+YAK SL + FF L + N+++ GL
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 329
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-GLVEEGRRRFLSMTCGYSITPEVE 179
G EA+ +F MI ++ + V+ V SAC G + + L++ G+ + V
Sbjct: 330 GLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN 389
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ ++DL K L +A + + K Q ++V W A++ + + + + + NE++
Sbjct: 390 N--AVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446
Query: 239 -LEPNNSGYCTLL 250
++P++ Y ++L
Sbjct: 447 GMKPDDFTYGSVL 459
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 4/229 (1%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
EA+ F M S I D V+++ V SACA G+++H ++ GFD+D+ + +A++
Sbjct: 334 EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVL 393
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
D+Y KC +L + L+F +++K+ WN+II L +G + + F+ M+ ++P+
Sbjct: 394 DLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDF 453
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
T+ SVL AC +E G + + +VD+ K G++++A +L
Sbjct: 454 TYGSVLKACAALRSLEYG-LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDR 512
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
Q V W A+L G L++ E A +E+ M L+P++ + T+L
Sbjct: 513 IGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVL 560
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ ++ Y+ G + ++ +F + + ++ WN+++ G G E++ +F M V
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146
Query: 140 PNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
P+ TF +L +C+ + G + L++ G I +V +VD+ K L+DAL
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEI--DVRTGSALVDMYGKCRSLDDAL 204
Query: 199 ELIRSSKFQPNAVIWGALLGGC 220
+ N V WGA + GC
Sbjct: 205 CFFYGMP-ERNWVSWGAAIAGC 225
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 212/327 (64%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RDI+SW +MIT +Q+ A+D F +M SGI D V+++ LSACA+L + G
Sbjct: 502 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFG 561
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++ DVY S L+DMYAKCG+L ++ VF ++EKN+ WNSII H
Sbjct: 562 KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNH 621
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G ++L +F M+ ++ + P+ +TF+ ++S+C H G V+EG R F SMT Y I P+ E
Sbjct: 622 GKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQE 681
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDL +AG L +A E ++S F P+A +WG LLG C+LH+N+E+A +A ++LM L
Sbjct: 682 HYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL 741
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+NSGY L+ N +A W VTK+R MKE ++K PG SWIE+ ++ + F + D
Sbjct: 742 DPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQK-IPGYSWIEINKRTHLFVSGDV 800
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP S IYS L+ L +L+L Y+P+
Sbjct: 801 NHPESSHIYSLLNSLLGELRLEGYIPQ 827
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ +T MI+ Y N + ++L+ F + ISP+++T+ ++L L AL LGRE+H
Sbjct: 405 DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH 464
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ GFD IG A++DMYAKCG ++ + +F +L ++++ WNS+I A
Sbjct: 465 GFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPS 524
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGC 183
A+ +F +M + + V+ + LSAC A L E + + +S+ +V
Sbjct: 525 AAIDIFRQMGVSGICYDCVSISAALSAC--ANLPSESFGKAIHGFMIKHSLASDVYSEST 582
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
++D+ +K G L+ A+ + ++ K + N V W +++ C H L+
Sbjct: 583 LIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLK 625
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D ++W MI+ Y Q+ E+L F EM +SG+ PD +T +++L + + L+
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+M+ +D+++ SAL+D Y KC + + +F + ++ + ++I G +
Sbjct: 360 KQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN 419
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE- 179
G ++L MF ++ + PN +T +S+L ++ GR G+ I +
Sbjct: 420 GLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH-----GFIIKKGFDN 474
Query: 180 --HYGC-MVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGGCKLHRN 225
+ GC ++D+ +K G + A E+ R SK + V W +++ C N
Sbjct: 475 RCNIGCAVIDMYAKCGRMNLAYEIFERLSK--RDIVSWNSMITRCAQSDN 522
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + W M+ Y++ + F+ M+ ISP+ VT VLS CA +DLG ++
Sbjct: 202 KDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL 261
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+ G D + I ++L+ MY+KCG D + +F + + WN +I G G
Sbjct: 262 HGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLM 321
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACT 153
E+L F MI V P+ +TF S+L + +
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 4/215 (1%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W ++I+ + +N +AL + +M G+SPD T ++ AC L +
Sbjct: 103 IRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSD 162
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V +G D + ++ S+L+ Y + G +D +F ++ +K+ WN ++ G A G
Sbjct: 163 TVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDS 222
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCM 184
+ F M + + PN VTF VLS C L++ G + L + G +++ +
Sbjct: 223 VIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN--SL 280
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + SK G +DA +L R + + V W ++ G
Sbjct: 281 LSMYSKCGRFDDASKLFRMMS-RADTVTWNCMISG 314
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 114/260 (43%), Gaps = 38/260 (14%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL- 102
++ +L AC++ L G+++H +++ D Y ++ MYA CGS +F++L
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 103 -REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH------- 154
R ++ WNSII +G ++ALA + +M+ V P+ TF ++ AC
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157
Query: 155 -----------------------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
+E G+ S + + + M++ +K
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217
Query: 192 GLLEDALE---LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN--SGY 246
G L+ ++ ++R + PNAV + +L C +++ + ++ L+++ +
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLG-VQLHGLVVVSGVDFEGSI 276
Query: 247 CTLLLNMYAEVSRWAEVTKI 266
LL+MY++ R+ + +K+
Sbjct: 277 KNSLLSMYSKCGRFDDASKL 296
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 216/324 (66%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ ++SW +++ +S NK+ EA F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 557 GQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 616
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG + SLLVF K+ +++ WN++I G A+HG
Sbjct: 617 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 676
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM ENV PN TF++VL AC+H GL ++G R F MT Y + P++EH+
Sbjct: 677 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 736
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++A++ I S FQ +AVIW LL CK+ +++EIA +A + +++L+P+
Sbjct: 737 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 796
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YAE +WA+V++ R +K+ G K+ PG SWIE++ +++ F DK+HP
Sbjct: 797 DSSVYILLSNVYAESGKWADVSRTRRLLKQ-GRLKKEPGCSWIEVQSEMHGFLVGDKAHP 855
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S E+Y L+ L ++KL+ Y P+
Sbjct: 856 RSGELYEMLNDLIGEMKLSGYEPD 879
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 14/257 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW +I QN + + + FNEM G+ PD T +VL ACA L +L+ G
Sbjct: 454 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 513
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V++ G D ++ S +VDMY KCG +D + + ++ + + WN+I+ G +++
Sbjct: 514 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 573
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
+ EA F M+ ++P+ TF +VL C + +E G++ G I E+
Sbjct: 574 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ-----IHGQIIKQEMLD 628
Query: 179 EHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ Y +VD+ +K G + D+L L+ + + V W A++ G LH L + + + E
Sbjct: 629 DEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALH-GLGVEALRMFER 686
Query: 237 MILE---PNNSGYCTLL 250
M E PN++ + +L
Sbjct: 687 MQKENVVPNHATFVAVL 703
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 1/197 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +++ Y Q F+E++D F EM G+SPD+ T A +L +C+ L L LG
Sbjct: 151 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 210
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G +IDV GSALVDMY KC SLD +L F+ + E+N W + I G +
Sbjct: 211 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQN 270
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
L +F M + + ++ S +C + G R+ + + +
Sbjct: 271 EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG-RQLHAHAIKNKFSSDRVV 329
Query: 181 YGCMVDLLSKAGLLEDA 197
+VD+ +KA L DA
Sbjct: 330 GTAIVDVYAKANSLTDA 346
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 130/253 (51%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW I QN+Q+ L+ F EM+ G+ Q + A+ +CA + L+ G
Sbjct: 252 MPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG 311
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ F D +G+A+VD+YAK SL + FF L + N+++ GL
Sbjct: 312 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRA 371
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-GLVEEGRRRFLSMTCGYSITPEVE 179
G EA+ +F MI ++ + V+ V SAC G + + L++ G+ + V
Sbjct: 372 GLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVN 431
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ ++DL K L +A + + K Q ++V W A++ + + + + + NE++
Sbjct: 432 N--AVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 488
Query: 239 -LEPNNSGYCTLL 250
++P++ Y ++L
Sbjct: 489 GMKPDDFTYGSVL 501
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 4/229 (1%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
EA+ F M S I D V+++ V SACA G+++H ++ GFD+D+ + +A++
Sbjct: 376 EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVL 435
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
D+Y KC +L + L+F +++K+ WN+II L +G + + F+ M+ ++P+
Sbjct: 436 DLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDF 495
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
T+ SVL AC +E G + + +VD+ K G++++A +L
Sbjct: 496 TYGSVLKACAALRSLEYG-LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDR 554
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
Q V W A+L G L++ E A +E+ M L+P++ + T+L
Sbjct: 555 IGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVL 602
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D + ++ Y+ G + ++ +F + + ++ WN+++ G G E++ +F M
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
V P+ TF +L +C+ + G + L++ G I +V +VD+ K
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEI--DVRTGSALVDMYGKCRS 241
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGC 220
L+DAL + N V WGA + GC
Sbjct: 242 LDDALCFFYGMP-ERNWVSWGAAIAGC 267
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 141/324 (43%), Positives = 205/324 (63%), Gaps = 4/324 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ +W +I +QN F EA+ F M + G P+ T++ +LSAC HLG L +G
Sbjct: 206 MPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIG 265
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ IH Y + +GF V G L+DMY KCG+L + +F ++ L WNS+I LA
Sbjct: 266 KVIHGYAWRSCVGFGSSVVNG--LIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLA 323
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG + A+A+F+ M E V+P+ VTF+ +L+ACTH G V+EG R F M + I PE+
Sbjct: 324 LHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEI 383
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDLL +AG +DA+ I K QP+ VIWG+LL C++HR+LE+A A+ L+
Sbjct: 384 EHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLD 443
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L P+N+ Y +L N+Y+E W EV K+R MKE K+ PG SWIE++RK +F + D
Sbjct: 444 LNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRFYSGD 503
Query: 299 KSHPASDEIYSSLSKLDEQLKLAS 322
HP S++IY +L KL +++ +
Sbjct: 504 DGHPESEDIYDTLDKLATTMEMQA 527
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 33/172 (19%)
Query: 23 REALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF--------- 72
R++L F M G +P+Q VL A +G + L R IH + + GF
Sbjct: 96 RDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIG-VQLVRSIHCHACKDGFYGHDFIRTS 154
Query: 73 ----------------------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
D +V +ALV YA+ G + ++++F ++ ++++ W
Sbjct: 155 LLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAW 214
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
N+II G +G EA+ +F RM+ E PNG T +LSAC H G+++ G+
Sbjct: 215 NAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGK 266
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARD++SW +MI+CY Q EAL +++M+ S + D T+ ++LS+CAH+GAL +G
Sbjct: 562 MPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG 621
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + ++++G+AL+DMYAKCGSL +L +F + ++++F WNS+I G VH
Sbjct: 622 VQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVH 681
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ F M+ V PN +TF+ +L C+H GLV+EG + F M+ +++ P ++H
Sbjct: 682 GRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKH 741
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L++ALE+IRSS Q + V+W LLG CK+HRN+EI +A+ L+ L
Sbjct: 742 YGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG 801
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+G C LL +YAE V ++R ++ GI K PG SWIE+ +V++F DKS
Sbjct: 802 SLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGI-KTTPGWSWIEVGDQVHRFVVDDKS 860
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L ++ + L Y E +++
Sbjct: 861 HPDSREIYRKLEEVIHRASLVGYAMEESSLV 891
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 11/250 (4%)
Query: 8 SWTTMITCYSQNKQ--FREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+W +MI +SQ+ +A+ +N M S PD T + +L AC RE+H
Sbjct: 465 AWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVH 524
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ G+D DV + + L+ YA G ++ + VF ++ ++L WNS+I G
Sbjct: 525 GFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE 584
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYG 182
EAL M+D+M NV +G T +S+LS+C H G + G + RF + +
Sbjct: 585 EALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER---RLVENIFVGN 641
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
++D+ +K G L AL + S + + W +++ G +H + A +++ +
Sbjct: 642 ALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 700
Query: 241 PNNSGYCTLL 250
PN+ + LL
Sbjct: 701 PNSITFLGLL 710
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 206/335 (61%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+I+SWTTMI+ YSQ+ ++AL F+EM ++SG+ P+ VT+ +VL ACA L L+
Sbjct: 226 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 285
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEG 116
GR+IH ++G + + + AL MYAKCGSL + F KL EKNL WN++I
Sbjct: 286 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 345
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A +G +A++ F MI ++P+ +TF +LS C+H+GLV+ G + F M+ YSI P
Sbjct: 346 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 405
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
VEHY C+ DLL +AG L +A +L+ IWG+LL C+ HRNLE+A A +L
Sbjct: 406 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 465
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+LEP N+G LL NMYAE RW EV K+R +K G K+ PG SWIE+ K + F
Sbjct: 466 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQG-TKKSPGCSWIEINGKAHMFLG 524
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP EIY L L E++K A Y P+ +L
Sbjct: 525 GDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVL 559
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 41/242 (16%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+ M+ Y+ + ++ FN GI D T VL + L ++ +G+ +H +++
Sbjct: 109 SKMVAFYASSGDIDSSVSVFN-----GIG-DYFTFPFVLKSSVELLSVWMGKCVHGLILR 162
Query: 70 IGFDIDVYIGSALVDMYAKCGSL-------------------------------DRSLLV 98
IG D+Y+ ++L+ +Y KCG + D +L +
Sbjct: 163 IGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAI 222
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAG 156
F ++ +N+ W ++I G + G A +AL++FD M+ E+ V PN VT +SVL AC
Sbjct: 223 FERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLS 282
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGA 215
+E G R+ + C + + + +K G L DA + ++ + N + W
Sbjct: 283 TLERG-RQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNT 341
Query: 216 LL 217
++
Sbjct: 342 MI 343
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 24/189 (12%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P ++ A V L L LG ++H +++ G +GS +V YA G +D S+ V
Sbjct: 68 PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127
Query: 99 FFKLREKNLFCWN--------SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
F + + F + S+ G VHG FD + + I +
Sbjct: 128 FNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV-------ATSLIILYG 180
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C G + + + F +MT +V + ++ +K+G ++ AL + ++ N
Sbjct: 181 KC---GEINDAGKVFDNMT-----IRDVSSWNALLAGYTKSGCIDAALAIFERMPWR-NI 231
Query: 211 VIWGALLGG 219
V W ++ G
Sbjct: 232 VSWTTMISG 240
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 209/317 (65%), Gaps = 7/317 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++I+W +I Y+QN + EA+ F ++K I P T VL+AC ++ L LG
Sbjct: 345 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLG 404
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
++ H++V++ GF + DV++G++LVDMY K GS+D VF ++ ++ WN++I
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 464
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G A +AL +F+RM+ N P+ VT I VLSAC H+GLV+EGRR F SMT + I
Sbjct: 465 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGI 524
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
TP +HY CMVDLL +AG L++A ELI +P++V+W +LLG C+LH+N+E+
Sbjct: 525 TPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAG 584
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L L+P NSG LL NMYAE+ +WAEV ++R +MK+ G+ K+ PG SWIE+ RK+ F
Sbjct: 585 RLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQ-PGCSWIEIGRKMNVF 643
Query: 295 AASDKSHPASDEIYSSL 311
A DK HP +EI+++L
Sbjct: 644 LARDKRHPCRNEIHNTL 660
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 134/256 (52%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW ++ITCY QN EAL F EM +G SPD+VT+++V+SACA L A G
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREG 271
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCG----------------------------- 90
R++H ++++ D+ + +ALVDMYAKCG
Sbjct: 272 RQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAK 331
Query: 91 --SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+++ + +VF ++ EKN+ WN +I A +G EA+ +F ++ +++ P T+ +V
Sbjct: 332 SANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNV 391
Query: 149 LSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRS 203
L+AC + ++ G++ L + PE + + +VD+ K G ++D ++
Sbjct: 392 LNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 451
Query: 204 SKFQPNAVIWGALLGG 219
+ N V W A++ G
Sbjct: 452 MAARDN-VSWNAMIVG 466
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 6/277 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFR--EALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
+P D S+ ++ +++ + +AL M + + A+ LSACA
Sbjct: 109 IPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSR 168
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++H V + DV+I SALVDMYAKC + + VF + E+N+ WNS+I
Sbjct: 169 TGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYE 228
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G EAL +F M+ P+ VT SV+SAC EGR+ M + ++
Sbjct: 229 QNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDM 288
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+VD+ +K G +A I S + V ++L G N+E A + +++
Sbjct: 289 VLNNALVDMYAKCGRTWEA-RCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQM-- 345
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
+E N + +L+ YA+ E ++ V +K I
Sbjct: 346 VEKNVIAW-NVLIAAYAQNGEEEEAIRLFVQLKRDSI 381
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 35 SGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD----IDVYIGSALVDMYAKCG 90
S ++ + + T++S A LG L R + FD + + +AL+ YA+ G
Sbjct: 46 SPVAGETFLLNTLVSTYARLGRLRDARRV--------FDEIPLRNTFSYNALLSAYARLG 97
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH--EALAMFDRMIYENVEPNGVTFISV 148
D + +F + + + +N+++ LA HG H +AL M ++ N +F S
Sbjct: 98 RPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASA 157
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
LSAC G + + +V +VD+ +K EDA + + +
Sbjct: 158 LSACAAEKDSRTG-EQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMP-ER 215
Query: 209 NAVIWGALL 217
N V W +L+
Sbjct: 216 NVVSWNSLI 224
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 208/327 (63%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII++T+MIT SQ +A+ F EM G+ PD ++++L+ACA L A + G+++H
Sbjct: 469 DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F DV+ G+ALV YAKCGS++ + L F L EK + W+++I GLA HG
Sbjct: 529 AHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGK 588
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E++ PN +T SVL AC HAGLV+E +R F SM + I EHY CM
Sbjct: 589 RALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACM 648
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG L+DA+EL+ S FQ NA +WGALL ++HR+ E+ +A +L ILEP S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKS 708
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W +V K+R MK+ ++K P SW+E++ KV+ F DKSHP +
Sbjct: 709 GTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKE-PAMSWVELKDKVHTFIVGDKSHPRA 767
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+IY+ L +L + + A YVP +E L
Sbjct: 768 RDIYAKLDELGDLMTKAGYVPNVEVDL 794
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 120/217 (55%), Gaps = 2/217 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW +++ Y +N + A+ F EM G+ P++ + V++AC L+ GR++
Sbjct: 165 RNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKV 224
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ G+D DV+ +ALVDMY+K G + + +VF K+ E ++ WN+ I G +HG
Sbjct: 225 HAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHD 284
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL + +M + PN T S+L AC +G GR+ M + + +G
Sbjct: 285 QHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG- 343
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+VD+ +K GLL+DA ++ Q + V+W AL+ GC
Sbjct: 344 LVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGC 379
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 156/335 (46%), Gaps = 42/335 (12%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++++T YS N R+AL AF M++ + ++ + VL G G ++H
Sbjct: 69 VSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHAL 125
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGFAHE 125
M G D+++ +ALV MY G +D + +VF + E+N WN ++ +
Sbjct: 126 AMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSH 185
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCM 184
A+ +F M++ V+PN F V++ACT + +E GR+ + + GY +V +
Sbjct: 186 AVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYD--KDVFTANAL 243
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+ SK G + A ++ + + V W A + GC LH H ++L+ +S
Sbjct: 244 VDMYSKLGDIRMA-AVVFGKVPETDVVSWNAFISGCVLH-----GHDQHALELLLQMKSS 297
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G L+ N++ S I K C GS + R+++ F K++ S
Sbjct: 298 G---LVPNVFTLSS----------------ILKACAGSGAFNLGRQIHGFMV--KANADS 336
Query: 305 D--------EIYSSLSKLDEQLKLASYVPELEAML 331
D ++Y+ LD+ K+ ++P+ + +L
Sbjct: 337 DNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D++SW I+ + + AL+ +MK+SG+ P+ T++++L ACA GA +LG
Sbjct: 263 VPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++++ D D YI LVDMYAK G LD + VF + +++L WN++I G + H
Sbjct: 323 RQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCS-H 381
Query: 121 GFAH-EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
G H EAL++F RM E + N T +VL + + + R+
Sbjct: 382 GAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQ 425
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 141/292 (48%), Gaps = 30/292 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++ W +I+ S Q EAL F M+ G ++ T+A VL + A L A+
Sbjct: 364 IPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDT 423
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++GF D ++ + L+D Y KC L+ + VF K ++ + S+I L+
Sbjct: 424 RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQC 483
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
+A+ +F M+ + ++P+ S+L+AC E+G +R+F+S
Sbjct: 484 DHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS----- 538
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEI 228
+V +V +K G +EDA +L S + V W A++GG H R L++
Sbjct: 539 ----DVFAGNALVYTYAKCGSIEDA-DLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDV 593
Query: 229 AHIAVNELMILEPNNSGYCTLL--LNMYAEVSRWAEVTKIRVAMKEL-GIEK 277
H V+E + PN+ ++L N V E + +MKE+ GIE+
Sbjct: 594 FHRMVDEH--ISPNHITMTSVLCACNHAGLVD---EAKRYFNSMKEMFGIER 640
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 206/335 (61%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+I+SWTTMI+ YSQ+ ++AL F+EM ++SG+ P+ VT+ +VL ACA L L+
Sbjct: 263 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 322
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEG 116
GR+IH ++G + + + AL MYAKCGSL + F KL EKNL WN++I
Sbjct: 323 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 382
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A +G +A++ F MI ++P+ +TF +LS C+H+GLV+ G + F M+ YSI P
Sbjct: 383 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 442
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
VEHY C+ DLL +AG L +A +L+ IWG+LL C+ HRNLE+A A +L
Sbjct: 443 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 502
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+LEP N+G LL NMYAE RW EV K+R +K G K+ PG SWIE+ K + F
Sbjct: 503 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGT-KKSPGCSWIEINGKAHMFLG 561
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP EIY L L E++K A Y P+ +L
Sbjct: 562 GDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVL 596
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +MI Y++ + + M + G + D T VL + L ++ +G+ +H ++
Sbjct: 139 FNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLIL 198
Query: 69 QIGFDIDVYIGSALVDMYAKCGS-------------------------------LDRSLL 97
+IG D+Y+ ++L+ +Y KCG +D +L
Sbjct: 199 RIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALA 258
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHA 155
+F ++ +N+ W ++I G + G A +AL++FD M+ E+ V PN VT +SVL AC
Sbjct: 259 IFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQL 318
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWG 214
+E G R+ + C + + + +K G L DA + ++ + N + W
Sbjct: 319 STLERG-RQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWN 377
Query: 215 ALL 217
++
Sbjct: 378 TMI 380
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P ++ A V L L LG ++H +++ G +GS +V YA G +D S+ V
Sbjct: 68 PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMF----------DRMIYENVEPNGVTFISV 148
F + E + +NS+I A +GFA +A + D + V + V +SV
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187
Query: 149 -LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
+ C H ++ G + L Y T + YG K G + DA ++ + +
Sbjct: 188 WMGKCVHGLILRIGLQFDL-----YVATSLIILYG-------KCGEINDAGKVFDNMTIR 235
Query: 208 PNAVIWGALLGG 219
+ W ALL G
Sbjct: 236 -DVSSWNALLAG 246
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 221/322 (68%), Gaps = 3/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SWT M++ Y+QN + EA++ F EM + +G+ P+++T+++VL ACA +GA++L
Sbjct: 179 MPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMEL 238
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR++ Y G +VY+ +AL++MY+KCGS+ ++ VF + R+++L WNS+I A
Sbjct: 239 GRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFA 298
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EALA+F ++ V+P+G+TF+ V+ ACTH GLV EG+ F SM +S+ P +
Sbjct: 299 VHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRI 358
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AGLL ++ LI S +P+AVIWGALLG C H N+E+A +A+++L+
Sbjct: 359 EHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLIH 418
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+ +L N+YA +W V ++ +KE K+ G S+IE++ +++F D
Sbjct: 419 LEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD-HKKSAGYSFIELDGTMHKFLVED 477
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
KSHP +E+Y++L+ + +KL
Sbjct: 478 KSHPRFEEVYNTLNSVTMTMKL 499
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D + +AL+ YAK G +D + +F ++ ++N+ W +++ G A +G EA+ F M
Sbjct: 152 DTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMW 211
Query: 135 YE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
V+PN +T SVL AC G +E G R+ G + V ++++ SK G
Sbjct: 212 ERAGVQPNELTVSSVLPACAAVGAMELG-RKVEEYARGKGLLRNVYVANALLEMYSKCGS 270
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A ++ + Q + W +++ +H
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVH 300
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 205/324 (63%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWT +IT Y+Q + +A+ F M+ + PD++ M L+ACA LGAL+LG
Sbjct: 174 MPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELG 233
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
I Y+ ++G ++ + +AL+DMYAK G + +L VF + K + W ++I GLA+
Sbjct: 234 EWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLAL 293
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL MF RM V+PN +TFI++LSAC+H GLV+ GR F M Y I P++E
Sbjct: 294 HGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIE 353
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCM+DLL +AG L++A L+ F+PNAVIWG+LL C H + E+ +A+ L+ L
Sbjct: 354 HYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLEL 413
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YA RW E +R M + G+ K+ PG S IE+ +V++F A +
Sbjct: 414 EPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGV-KKMPGGSLIEVNNRVHEFIAGEI 472
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
SH D I LSK++ QL L+ +
Sbjct: 473 SHSQFDRIQEVLSKINRQLGLSQH 496
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 3 ARDIISWTTMITCYSQNKQFREA-LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
A DI + +I S + +A + +N ++ +G+ PD + L A ++ GR
Sbjct: 39 APDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGR 98
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMY----------------------------------- 86
++H ++ G D+++ +A V MY
Sbjct: 99 QLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGY 158
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
AK G L + +F ++ ++N+ W ++I G A H+A+A+F RM ENVEP+ + +
Sbjct: 159 AKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAML 218
Query: 147 SVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
L+AC G +E G R ++ +T + ++D+ +K+G ++ AL++ +
Sbjct: 219 VALTACARLGALELGEWIRHYIDRLG--LLTTNIPLNNALIDMYAKSGDIKSALQVFENM 276
Query: 205 KFQPNAVIWGALLGGCKLH 223
+ + W ++ G LH
Sbjct: 277 NHK-TIITWTTMIAGLALH 294
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 221/322 (68%), Gaps = 3/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SWT M++ Y+QN + EA++ F EM + +G+ P+++T+++VL ACA +GA++L
Sbjct: 179 MPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMEL 238
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR++ Y G +VY+ +AL++MY+KCGS+ ++ VF + R+++L WNS+I A
Sbjct: 239 GRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFA 298
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EALA+F ++ V+P+G+TF+ V+ ACTH GLV EG+ F SM +S+ P +
Sbjct: 299 VHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRI 358
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AGLL ++ LI S +P+AVIWGALLG C H N+E+A +A+++L+
Sbjct: 359 EHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLIH 418
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+ +L N+YA +W V ++ +KE K+ G S+IE++ +++F D
Sbjct: 419 LEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD-HKKSAGYSFIELDGTMHKFLVED 477
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
KSHP +E+Y++L+ + +KL
Sbjct: 478 KSHPRFEEVYNTLNSVTMTMKL 499
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D + +AL+ YAK G +D + +F ++ ++N+ W +++ G A +G EA+ F M
Sbjct: 152 DTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMW 211
Query: 135 YE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
V+PN +T SVL AC G +E G R+ G + V ++++ SK G
Sbjct: 212 ERAGVQPNELTVSSVLPACAAVGAMELG-RKVEEYARGKGLLRNVYVANALLEMYSKCGS 270
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A ++ + Q + W +++ +H
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVH 300
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 216/332 (65%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M R ++SW MI+ Y+QN ++EA++ F+ M G + P++VT+ +VL A + LG L+L
Sbjct: 225 MAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLEL 284
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +HLY + ID +GSALVDMYAKCGS+++++ VF +L + N+ WN++I GLA+
Sbjct: 285 GKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAM 344
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A++ RM + P+ VT+I++LSAC+HAGLV+EGR F M + P++E
Sbjct: 345 HGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIE 404
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE+A ELI + +P+ VIW ALLG K+H+N++I A LM +
Sbjct: 405 HYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQM 464
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P++SG L NMYA W V +R+ MK++ I K PG SWIE++ +++F D
Sbjct: 465 APHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKD-PGCSWIEIDGVIHEFLVEDD 523
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SH + +I+S L ++ +L L ++P+ +L
Sbjct: 524 SHSRAKDIHSMLEEISNKLSLEGHMPDTTQVL 555
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 128/273 (46%), Gaps = 52/273 (19%)
Query: 1 MPARDIISWTTMITCYSQNK-QFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALD 58
+P R+ +W T+I ++ + + +AL F +M + + P+Q T +VL ACA + L
Sbjct: 75 LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF------------------ 100
G+++H +++ G D ++ + L+ MY CGS++ + ++F+
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERG 194
Query: 101 -----------------------------KLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
++ ++++ WN +I G A +GF EA+ +F
Sbjct: 195 REFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFH 254
Query: 132 RMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK 190
RM+ +V PN VT +SVL A + G++E G+ L +V +VD+ +K
Sbjct: 255 RMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLG-SALVDMYAK 313
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G +E A+++ Q N + W A++GG +H
Sbjct: 314 CGSIEKAIQVFERLP-QNNVITWNAVIGGLAMH 345
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREK 105
+ AC + L +++H ++++ G D I + ++ + A D +L VF +L E+
Sbjct: 22 IKACKSMREL---KQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78
Query: 106 NLFCWNSIIEGLAVHGFAH-EALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRR 163
N F WN++I LA H +AL +F +M+ E VEPN TF SVL AC + EG++
Sbjct: 79 NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 213/327 (65%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SWT +++ Y+ ++A+ +F +M+ +G+ PD T+ ++L++CA G L LG
Sbjct: 100 MPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLG 159
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + +I + V + +ALVDMYAKCG +DR+L VF + +K+L WN +++GLA+H
Sbjct: 160 KRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMH 219
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M E P+ VT ++VL AC HAG V+EG R F +M Y I P +EH
Sbjct: 220 GHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEH 279
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G L++A L++S +PN VIWG LLG C++H + +A ++ L LE
Sbjct: 280 YGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLE 339
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G +LL N++A W+ V +R+ MK GI+K G+S IE++ +V++F DKS
Sbjct: 340 PSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKP-SGASSIEVDDEVHEFTVFDKS 398
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP SD+IY +++L LK VP++
Sbjct: 399 HPKSDKIYQMINRLGLDLKRVHVVPKV 425
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW +MI + + EA F+EM D V+ T+L ++ A ++
Sbjct: 7 MDERDVVSWNSMIRGLLKVGELSEACKLFDEMP----MKDAVSWNTILDG--YVKAGEMN 60
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ L+ + + +V S +V Y K G ++ + ++F ++ KNL W I+ G AV
Sbjct: 61 KAFGLF--ESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVK 118
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G A +A+ F++M ++P+ T IS+L++C +GL+ G+R S+ Y + V
Sbjct: 119 GLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVS 178
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ +VD+ +K G ++ AL + + + V W +L G +H + E A
Sbjct: 179 N--ALVDMYAKCGQVDRALSVFNGMS-KKDLVSWNCMLQGLAMHGHGEKA 225
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/333 (42%), Positives = 217/333 (65%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SW T+I Y+ ++EAL F EM SG P+ VT+ +VL ACAHLGA+D+G
Sbjct: 261 LSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIG 320
Query: 61 REIHLYVMQI--GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + G + + ++L+DMYAKCG ++ + VF + ++L WN++I G A
Sbjct: 321 RWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFA 380
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ A +F RM VEP+ +TF+ +LSAC+H+GL++ GR+ F SMT Y++TP++
Sbjct: 381 MHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKL 440
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +GL ++A E+I + +P+ VIW +LL CK H NLE+A +L+
Sbjct: 441 EHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIK 500
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP NSG LL N+YA RW +V ++R + G+ K+ PG S IE++ V++F D
Sbjct: 501 IEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGM-KKVPGCSSIEVDSVVHEFIIGD 559
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP EIY L ++D QL+ A + P+ +L
Sbjct: 560 KLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVL 592
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 6/225 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW MIT Y +N ++ EAL+ F EM + + PD+ T+ +V+SACA G+++LGR++
Sbjct: 159 RDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQV 218
Query: 64 HLYVMQI----GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
H +V GF + I +AL+D+Y+KCG ++ + +F L K++ WN++I G
Sbjct: 219 HSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTH 278
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPEV 178
EAL +F M+ PN VT +SVL AC H G ++ GR + + +T E
Sbjct: 279 TNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNET 338
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G +E A ++ S ++ + W A++ G +H
Sbjct: 339 SLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS-WNAMIFGFAMH 382
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 36/256 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM+ ++ + AL+ + M + G P+ + +L +CA A + GR+IH
Sbjct: 28 NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIH 87
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLD-----------RSLL---------------- 97
V+++G +D Y+ ++L+ MYA+ G L+ R ++
Sbjct: 88 AQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFR 147
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
VF ++ E+++ WN++I G +G EAL +F M+ NV P+ T +SV+SAC
Sbjct: 148 SARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACA 207
Query: 154 HAGLVEEGRRR---FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+G +E GR+ + + ++ ++DL SK G +E A L + +
Sbjct: 208 QSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCK-DV 266
Query: 211 VIWGALLGGCKLHRNL 226
V W L+GG H NL
Sbjct: 267 VSWNTLIGG-YTHTNL 281
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L ++ VF ++E NL WN+++ G A AL M+ RM+ PN +F +L +
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 152 CTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
C + EEGR+ + L + CG ++ + ++ G LEDA ++ +S +
Sbjct: 74 CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTS----LISMYARNGGLEDARKVFDASSHR- 128
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRV 268
+ V AL+ G + A +E I E + + ++ Y E R+ E ++
Sbjct: 129 DVVSCTALITGYASRGDFRSARKVFDE--ITERDVVSW-NAMITGYVENGRYEEALELFK 185
Query: 269 AMKELGIE----------KRCPGSSWIEMERKVYQF 294
M + C S IE+ R+V+ +
Sbjct: 186 EMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSW 221
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 216/327 (66%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT++I +QN + EAL+ F EM+ +G+ P+ VT+ ++L AC ++ AL GR H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ +++ +V++GSAL+DMYAKCG ++ S +VF + KNL CWNS++ G ++HG A
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +++F+ ++ ++P+ ++F S+LSAC GL +EG + F M+ Y I P +EHY CM
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V+LL +AG L++A +LI+ F+P++ +WGALL C+L N+++A IA +L LEP N
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W EV IR M+ LG++K PG SWI+++ +VY A DKSHP
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKN-PGCSWIQVKNRVYTLLAGDKSHPQI 650
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
D+I + ++ ++++ + + P L+ L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNLDFAL 677
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 45/258 (17%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I+SW +++ ++++ +EA+ F ++ + G PDQVT+++VL + L++GR IH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------------D 93
YV++ G D + SA++DMY K G + D
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 94 RSLLVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++L +F +E+ N+ W SII G A +G EAL +F M V+PN VT S+L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEV---EHYG-CMVDLLSKAGLLEDALELIRSSK 205
AC + + GR T G+++ + H G ++D+ +K G + + +++ +
Sbjct: 396 PACGNIAALGHGRS-----THGFAVRVHLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMM 449
Query: 206 FQPNAVIWGALLGGCKLH 223
N V W +L+ G +H
Sbjct: 450 PTKNLVCWNSLMNGFSMH 467
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 129/321 (40%), Gaps = 88/321 (27%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P I S++++I ++ K F +++ F+ M + G+ PD + + CA L A +G
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------------- 105
++IH G D+D ++ ++ MY +CG + + VF ++ +K
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195
Query: 106 --------------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
N+ WN I+ G G+ EA+ MF ++ + P+ VT
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC----MVDL-------------- 187
SVL + + ++ GR + GY I + C M+D+
Sbjct: 256 SSVLPSVGDSEMLNMGR-----LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310
Query: 188 -----------------LSKAGLLEDAL---ELIRSSKFQPNAVIWGALLGGC------- 220
LS+ GL++ AL EL + + N V W +++ GC
Sbjct: 311 NQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDI 370
Query: 221 ---KLHRNLEIAHIAVNELMI 238
+L R +++A + N + I
Sbjct: 371 EALELFREMQVAGVKPNHVTI 391
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++ W +++ +S + + +E + F + + + PD ++ ++LSAC +G D G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+ + + G + S +V++ + G L +
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 207/329 (62%), Gaps = 7/329 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI+SW +I Y+QN + EAL F +K + P T +L+A A+L L+LGR+
Sbjct: 353 KDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQA 412
Query: 64 HLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
H +V++ GF + D+++G++L+DMY KCGS++ L VF + EK+ WN++I G
Sbjct: 413 HSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGY 472
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A +G+ EAL +F +M+ +P+ VT I L AC+HAGLVEEGRR F SMT + + P
Sbjct: 473 AQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPV 532
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+HY CMVDLL +AG LE+A +LI S QP+AV+W +LL CK+HRN+ + ++
Sbjct: 533 KDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIF 592
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
++P +SG LL NMY+E+ RW + +R M+ G+ K+ PG SWI+++ V+ F
Sbjct: 593 EIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQ-PGCSWIDIQSNVHVFMVK 651
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPE 326
DK HP EIYS L L + ++ A YVP+
Sbjct: 652 DKRHPQKKEIYSILKLLTKHMRQAGYVPD 680
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 48/261 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SW +ITCY QN EAL+AF M G PD+VT+A+V+SACA L A G
Sbjct: 217 MEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEG 276
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKL----------------- 102
+IH V++ F D+ +G+ALVDMYAKCG ++ + VF ++
Sbjct: 277 VQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAK 336
Query: 103 --------------REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
++K++ WN++I G +G EAL +F + E+V P TF ++
Sbjct: 337 SASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNL 396
Query: 149 LSACTHAGLVEEGRR----------RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
L+A + +E GR+ RF S P++ ++D+ K G +E+ L
Sbjct: 397 LNASANLADLELGRQAHSHVVKHGFRFQS-----GEEPDIFVGNSLIDMYMKCGSVEEGL 451
Query: 199 ELIRSSKFQPNAVIWGALLGG 219
+ + + + V W ++ G
Sbjct: 452 RVF-ENMVEKDHVSWNTMIIG 471
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D SW +MI ++Q+ +F EALD F M + + + LSAC+ L L LG
Sbjct: 116 MPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLG 175
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH + + + +DV++GS L+D Y+KCG + + VF + EKN+ WN +I +
Sbjct: 176 AQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQN 235
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL F RM +P+ VT SV+SAC +EG + + ++
Sbjct: 236 GPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLIL 295
Query: 181 YGCMVDLLSKAGLLEDA 197
+VD+ +K G + +A
Sbjct: 296 GNALVDMYAKCGRVNEA 312
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 35/210 (16%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D A +L C L + R +H ++Q F +V+I + L+D+Y KCG LD + VF
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82
Query: 100 FKLREKNLF-------------------------------CWNSIIEGLAVHGFAHEALA 128
++ E+N+F WNS+I G A H EAL
Sbjct: 83 DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
F RM ++ N +F S LSAC+ ++ G + L YS+ +V ++D
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSL--DVFMGSGLIDF 200
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALL 217
SK GL+ A + + + N V W L+
Sbjct: 201 YSKCGLVGCARRVFDGME-EKNVVSWNCLI 229
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW TMI Y+QN EAL+ F +M SG PD VTM L AC+H G ++ G
Sbjct: 457 MVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEG 516
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIE 115
R + + M + D Y + +VD+ + G L+ + L+ ++ + W+S++
Sbjct: 517 RR-YFFSMTKEHGLLPVKDHY--TCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLS 573
Query: 116 GLAVH 120
VH
Sbjct: 574 ACKVH 578
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 210/324 (64%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT +I Y+Q KQ EA++ F M+ GI PD V + +VLSAC LG +DLG
Sbjct: 164 MPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLG 223
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V++ G ++ + +A++DMY KCGS+ ++L VF + +K++ W ++I G A+H
Sbjct: 224 EWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALH 283
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F RM ENV PN +TF++VLS C+H GL + GR F +M Y I P VEH
Sbjct: 284 GLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEH 343
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L +A LI+ F+ NA IWGALL + H + E+ A+ L+ LE
Sbjct: 344 YGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELE 403
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YAE RW V ++R++M++ G+ + PG+S I+++ V++F + D S
Sbjct: 404 PHNSGNYILLSNIYAEQERWDAVRELRISMRDRGL-RNVPGASSIDVDGMVHEFTSRDGS 462
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP+ +I L ++ +K ++
Sbjct: 463 HPSLHKIREVLCAINSNIKSVGHI 486
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV + ++D Y K G L R+ +F + +N+ W +I A EA+ +F RM
Sbjct: 137 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 196
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
E +EP+GV +SVLSAC G+V+ G RF+ + E+ ++D+ K G
Sbjct: 197 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFV---LRRGLCQEIPLMNAIIDMYVKCG 253
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH----------RNLEIAHIAVNELMIL 239
++ ALE+ + Q + V W ++ G LH R +E +++ N++ L
Sbjct: 254 SVKKALEVFEGME-QKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFL 309
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 212/329 (64%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++D++ W+ MI+ Y+QN EA D F M GI P++ TM ++L CA G+L++G+
Sbjct: 391 SKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKW 450
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH Y+ + G D+ + ++ VDMYA CG +D + +F + ++++ WN++I G A+HG
Sbjct: 451 IHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGH 510
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
AL +F+ M V PN +TFI L AC+H+GL++EG+R F M + TP+VEHYG
Sbjct: 511 GEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYG 570
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AGLL++A ELI+S +PN ++G+ L CKLH+N+++ A + + LEP+
Sbjct: 571 CMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPH 630
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
SGY L+ N+YA +RW +V IR AMK+ GI K PG S IE+ +++F D+ HP
Sbjct: 631 KSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKE-PGVSSIEVNGLLHEFIMGDREHP 689
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ ++Y + ++ E+L+ A Y P++ +L
Sbjct: 690 DAKKVYEMIDEMREKLEDAGYTPDVSCVL 718
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 2/224 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
IISWT MI Y E + F +M G+ P+++TM +++ C GAL+LG+ +H
Sbjct: 293 IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ ++ GF + + + +A +DMY KCG + + VF + K+L W+++I A + E
Sbjct: 353 FTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDE 412
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A +F M + PN T +S+L C AG +E G + S I ++ V
Sbjct: 413 AFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFV 471
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
D+ + G ++ A L + + +W A++ G +H + E A
Sbjct: 472 DMYANCGDIDTAHRLFAEAT-DRDISMWNAMISGFAMHGHGEAA 514
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 114/217 (52%), Gaps = 6/217 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW+TMI Y ++ EALD +M + P ++ M ++ A L L LG+ +
Sbjct: 188 KDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAM 247
Query: 64 HLYVMQIG--FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H YVM+ G V + +AL+DMY KC +L + VF L + ++ W ++I
Sbjct: 248 HAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCN 307
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEH 180
+E + +F +M+ E + PN +T +S++ C AG +E G+ ++ G++++ +
Sbjct: 308 NLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLA- 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+D+ K G + A + S K + + ++W A++
Sbjct: 367 -TAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMI 401
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+IT Y +N +A + M+ + D + +VL AC + + LG+E+H +V++ G
Sbjct: 95 LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F DV++ +AL+ MY++ GSL + L+F K+ K++ W+++I G EAL +
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214
Query: 132 RMIYENVEPNGVTFISV-----------LSACTHAGLVEEGRRRFLSMTCGYSITP 176
M V+P+ + IS+ L HA ++ G+ CG S P
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGK-------CGKSGVP 263
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 218/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SW+ MI Y + + +A++ F EM+ G+ PD++TM +VLSAC LGAL+LG
Sbjct: 75 MYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELG 134
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + YV + +V + +AL+DM+AKCG +D++ +F +RE+N+ W S+I GLA+H
Sbjct: 135 KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMH 194
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+A+F+ M+ V P+ V FI +LSAC+H+GLV++G+R F SM +SI P++EH
Sbjct: 195 GRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEH 254
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AGL+++AL+ ++ PN V+W L+ C+ H L++ +L+ E
Sbjct: 255 YGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNE 314
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + LL N+YA++S W + T+IR AM G+ K+ PGS+ IE++ ++Y+F A DKS
Sbjct: 315 PMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGM-KKIPGSTMIELDNEIYEFVAGDKS 373
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S EIY + ++ +++K A Y+P +L
Sbjct: 374 HAQSKEIYEMVDEMGKEMKRAGYMPTTTEVL 404
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC----GSLDR 94
P++ T VL ACA +G L+LG+ +H VM+ GF +V + + LV MY C G ++
Sbjct: 8 PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ VF ++ + + W+++I G G + +A+ +F M + V P+ +T +SVLSACT
Sbjct: 68 ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G +E G + S + VE ++D+ +K G ++ A L RS + + N V W
Sbjct: 128 LGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR-ERNIVSWT 185
Query: 215 ALLGGCKLH-RNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+++GG +H R +E +AV E M+ + P++ + LL
Sbjct: 186 SVIGGLAMHGRGVEA--VAVFEEMVRSGVTPDDVVFIGLL 223
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 211/329 (64%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D ++W +I Y QN +EA+ +F++M+ P+ VT +VL A A+L A G
Sbjct: 595 TKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 654
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++Q+GF + +G++L+DMYAKCG LD S +F ++ K+ WN+++ G AVHG
Sbjct: 655 FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGH 714
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A+A+F M V+ + V+F+SVLSAC HAGLVEEGR+ F SM+ Y I P++EHY
Sbjct: 715 GDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYA 774
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AGL ++ L I+ +P+A +WGALLG C++H N+++ +A++ L+ LEP
Sbjct: 775 CMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPR 834
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N + +L ++YA+ RWA+ K R M +LG+ K+ PG SW+E++ KV+ F DKSHP
Sbjct: 835 NPAHFVVLSSIYAQSGRWADAGKARSKMNDLGL-KKTPGCSWVELKNKVHAFRVGDKSHP 893
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ ++ + L E+++ YVP+ +L
Sbjct: 894 QLESMHLLWNTLLEKMEKIGYVPDRSCVL 922
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 7/303 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD+++W+ +I Q EAL F EM+N + P++VT+ ++L ACA L L LG
Sbjct: 390 LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + ++ D D+ G+ALV MYAKCG +L F ++ +++ WNS+I G A
Sbjct: 450 KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQI 509
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
G + A+ MF ++ + P+ T + V+ AC +++G L + G+ V+
Sbjct: 510 GDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVK 569
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC--KLHRNLEIAHIAVNELM 237
+ ++D+ +K G L A L + F + V W ++ H I+ L
Sbjct: 570 N--ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE 627
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG-IEKRCPGSSWIEMERKVYQFAA 296
PN+ + + +L A ++ + E + ++G + G+S I+M K Q
Sbjct: 628 NFHPNSVTFVS-VLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDY 686
Query: 297 SDK 299
S+K
Sbjct: 687 SEK 689
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW TM+ Y+ N F E L+ F++MK + ++V+ + A A L+ G
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH +Q D D+ + + L+ MYAKCG +++ +F+ L+ ++L W++II L
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EAL++F M + ++PN VT +S+L AC L++ G + T + ++
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLST 467
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + +K G AL + + V W +L+ G
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 14/222 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL-- 59
P+R I W +MI Y+++KQ+ EAL+ + M G+ PD+ T VL AC GAL+L
Sbjct: 92 PSR--ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT--GALNLQE 147
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G H + + G + DV+IG+ LVDMY+K G L R+ VF K+ ++++ WN++I GL+
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
EA+ F M VEP+ V+ +++ +E R GY +
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRS-----IHGYVFRRDFS 262
Query: 180 H--YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL SK G + D + + V WG ++ G
Sbjct: 263 SAVSNGLIDLYSKCGDV-DVARRVFDQMVDQDDVSWGTMMAG 303
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 35/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W MI SQ++ EA+D F M+ G+ P V++ + L ++L
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELC 249
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV + F V G L+D+Y+KCG +D + VF ++ +++ W +++ G A +
Sbjct: 250 RSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN 307
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------------- 163
G E L +FD+M NV N V+ +S A +E+G+
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVA 367
Query: 164 ---RFLSMTCGYSITPEVEHYG----------CMVDLLSKAGLLEDALEL---IRSSKFQ 207
+ CG + + +G ++ L + G E+AL L +++ K +
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427
Query: 208 PNAVIWGALLGGC 220
PN V ++L C
Sbjct: 428 PNRVTLMSILPAC 440
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+LS+C HL L +IH ++ GF I + L+++Y+ D + VF +
Sbjct: 38 LLSSCKHLNPL---LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPS 93
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
WNS+I +EAL M+ M+ + +EP+ TF VL ACT A ++EG F
Sbjct: 94 RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG-VWFH 152
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V +VD+ SK G L+ A E+ + + V W A++ G
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW M++ Y+ + A+ F+ M+ S + D V+ +VLSAC H G ++ G
Sbjct: 694 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEG 753
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEG 116
R+I + M + I D+ + +VD+ + G D + L F K+ E + W +++
Sbjct: 754 RKI-FHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET-LGFIKVMPVEPDAGVWGALLGS 811
Query: 117 LAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAG-LVEEGRRRFLSMTCGYSI 174
+H D ++ +EP N F+ + S +G + G+ R G
Sbjct: 812 CRMHSNVKLGEVALDHLV--KLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKK 869
Query: 175 TP 176
TP
Sbjct: 870 TP 871
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 216/327 (66%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT++I +QN + EAL+ F EM+ +G+ P+ VT+ ++L AC ++ AL GR H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ +++ +V++GSAL+DMYAKCG ++ S +VF + KNL CWNS++ G ++HG A
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +++F+ ++ ++P+ ++F S+LSAC GL +EG + F M+ Y I P +EHY CM
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V+LL +AG L++A +LI+ F+P++ +WGALL C+L N+++A IA +L LEP N
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W EV IR M+ LG++K PG SWI+++ +VY A DKSHP
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKN-PGCSWIQVKNRVYTLLAGDKSHPQI 650
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
D+I + ++ ++++ + + P L+ L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNLDFAL 677
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 49/316 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I+SW +++ ++++ +EA+ F ++ + G PDQVT+++VL + L++GR IH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------------D 93
YV++ G D + SA++DMY K G + D
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 94 RSLLVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++L +F +E+ N+ W SII G A +G EAL +F M V+PN VT S+L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEV---EHYG-CMVDLLSKAGLLEDALELIRSSK 205
AC + + GR T G+++ + H G ++D+ +K G + + +++ +
Sbjct: 396 PACGNIAALGHGRS-----THGFAVRVHLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMM 449
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLLLNMYAEVSRWAEV 263
N V W +L+ G +H + LM L+P+ + T LL+ +V E
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF-TSLLSACGQVGLTDEG 508
Query: 264 TK-IRVAMKELGIEKR 278
K ++ +E GI+ R
Sbjct: 509 WKYFKMMSEEYGIKPR 524
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 82/318 (25%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P I S++++I ++ K F +++ F+ M + G+ PD + + CA L A +G
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------------- 105
++IH G D+D ++ ++ MY +CG + + VF ++ +K
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195
Query: 106 --------------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
N+ WN I+ G G+ EA+ MF ++ + P+ VT
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 146 ISVLSACTHAGLVEEGR--------RRFLSMTCGYSITPEVEHYG--------------- 182
SVL + + ++ GR + L C I+ ++ YG
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKC--VISAMIDMYGKSGHVYGIISLFNQF 313
Query: 183 ---------CMVDLLSKAGLLEDAL---ELIRSSKFQPNAVIWGALLGGC---------- 220
+ LS+ GL++ AL EL + + N V W +++ GC
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEAL 373
Query: 221 KLHRNLEIAHIAVNELMI 238
+L R +++A + N + I
Sbjct: 374 ELFREMQVAGVKPNHVTI 391
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++ W +++ +S + + +E + F + + + PD ++ ++LSAC +G D G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+ + + G + S +V++ + G L +
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 205/324 (63%), Gaps = 1/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + W +MIT SQN + EA+D F +M +G D V+++ LSACA+L AL G+EI
Sbjct: 415 KDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEI 474
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++M+ F D++ SAL+DMY+KCG+LD + VF + EKN WNSII HG
Sbjct: 475 HAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRL 534
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
++L +F M+ + ++P+ VTF++++SAC HAG V+EG F MT I +EHY C
Sbjct: 535 KDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYAC 594
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDL +AG L +A +I S F P+A +WG LLG C+LH N+E+A +A L L+P N
Sbjct: 595 MVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQN 654
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N++A +W V KIR MKE G++K PG SWI++ + F A+D+SHP
Sbjct: 655 SGYYVLLSNVHANAGQWESVLKIRSLMKERGVQK-VPGCSWIDVNNTTHMFVAADRSHPQ 713
Query: 304 SDEIYSSLSKLDEQLKLASYVPEL 327
S +IY L L +L+ YVP+L
Sbjct: 714 SSQIYLLLKNLFLELRKEGYVPQL 737
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ T MI+ Y N AL+ F + + + VT+A+VL ACA L AL LG+E+H
Sbjct: 315 DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELH 374
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ G Y+GSA++DMYAKCG LD + F + +K+ CWNS+I + +G
Sbjct: 375 GHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPE 434
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M + + V+ + LSAC + + G+ M G + ++ +
Sbjct: 435 EAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESAL 493
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+D+ SK G L+ A + + + + N V W +++ H L+
Sbjct: 494 IDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAAYGNHGRLK 535
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 46/306 (15%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI ++ QF AL + +M G PD+ T V+ AC L ++ LGR +H +
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+GF++DV++GS+L+ Y++ G + + +F ++ K+ WN ++ G +G A
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATG 234
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
+F M PN VTF VLS C ++ G + L ++ G + V + ++D+
Sbjct: 235 VFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDI 294
Query: 188 LSKA-------------------------------GLLEDALELIR---SSKFQPNAVIW 213
K G+ +ALE+ R + + N+V
Sbjct: 295 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTL 354
Query: 214 GALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYC---TLLLNMYAEVSR--WAEVTKI 266
++L C L + EL IL+ + G C + +++MYA+ R A T I
Sbjct: 355 ASVLPACAGLAALTLG----KELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFI 410
Query: 267 RVAMKE 272
++ K+
Sbjct: 411 GISDKD 416
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 22/231 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++D + W M+ Y +N + A F EM+ + +P+ VT A VLS CA ++ G
Sbjct: 208 MPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFG 267
Query: 61 REIHLYVMQIGFDIDVYIGS--ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++H V+ G ++D + + AL+D+Y KC ++ + +F + ++ ++I G
Sbjct: 268 SQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYV 327
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++G + AL +F ++ E + N VT SVL AC AGL ++T G + +
Sbjct: 328 LNGMNNNALEIFRWLLQERMRANSVTLASVLPAC--AGLA--------ALTLGKELHGHI 377
Query: 179 EHYG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
G ++D+ +K G L+ A + +AV W +++ C
Sbjct: 378 LKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSC 427
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ +SW ++I Y + + +++L+ F+ M GI PD VT ++SAC H G +D G
Sbjct: 513 MEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG 572
Query: 61 REIHLY---VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
IH + ++G + + +VD++ + G L+ + + + + W +++
Sbjct: 573 --IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGA 630
Query: 117 LAVHG 121
+HG
Sbjct: 631 CRLHG 635
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
+ ++L C L GR+ H ++ G + +G+ L+ MY CG+ + +F++LR
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 104 EKNLFC---WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
L+C WN +I G + G AL + +M+ P+ TF V+ AC V
Sbjct: 109 ---LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVAL 165
Query: 161 GRR-----RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
GR +F+ G+ + +V ++ S+ G + DA L + V+W
Sbjct: 166 GRVVHDKIQFM----GFEL--DVFVGSSLIKFYSENGCIHDARYLFDRMP-SKDGVLWNV 218
Query: 216 LLGG 219
+L G
Sbjct: 219 MLNG 222
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 218/330 (66%), Gaps = 4/330 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTT+I Y+Q ++ EA++ F M+ GI PD V + +VLSAC LGA+DLG
Sbjct: 171 MPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V++ G ++ + ++++DMY KCG +++++ VF + EK++ W ++I G A+H
Sbjct: 231 EWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALH 290
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ MF RM EN+ PN VTF+++LSAC+H GL + GR F M Y I P+VEH
Sbjct: 291 GLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEH 350
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A +L++ + NA IWGALL + H + ++ A+ L+ LE
Sbjct: 351 YGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELE 410
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N++AE RW +V+K+R AMKE G+ + PG+S IE++ V++F + D S
Sbjct: 411 PSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGL-RNVPGASSIEVDGMVHEFTSRDGS 469
Query: 301 HPASDEIYSSLSKLDEQLK---LASYVPEL 327
HP +I L +++ +K AS PE+
Sbjct: 470 HPFLHKICEVLCEINTNMKSVGFASVFPEV 499
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV + ++ Y K G L + +F + E+N+ W ++I G A EA+ +F RM
Sbjct: 144 DVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQ 203
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
E +EP+GV +SVLSAC G V+ G RF+ + E+ ++D+ K G
Sbjct: 204 VEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFV---VRRGLRQEIPLMNSIIDMYMKCG 260
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH----------RNLEIAHIAVNELMIL 239
+E A+E+ + + + V W L+ G LH R +E ++A N++ L
Sbjct: 261 CIEKAVEVFEGME-EKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFL 316
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 205/324 (63%), Gaps = 1/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + W +MIT SQN + EA+D F +M +G D V+++ LSACA+L AL G+EI
Sbjct: 514 KDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEI 573
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++M+ F D++ SAL+DMY+KCG+LD + VF + EKN WNSII HG
Sbjct: 574 HAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRL 633
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
++L +F M+ + ++P+ VTF++++SAC HAG V+EG F MT I +EHY C
Sbjct: 634 KDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYAC 693
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDL +AG L +A +I S F P+A +WG LLG C+LH N+E+A +A L L+P N
Sbjct: 694 MVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQN 753
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N++A +W V KIR MKE G++K PG SWI++ + F A+D+SHP
Sbjct: 754 SGYYVLLSNVHANAGQWESVLKIRSLMKERGVQK-VPGCSWIDVNNTTHMFVAADRSHPQ 812
Query: 304 SDEIYSSLSKLDEQLKLASYVPEL 327
S +IY L L +L+ YVP+L
Sbjct: 813 SSQIYLLLKNLFLELRKEGYVPQL 836
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ T MI+ Y N AL+ F + + + VT+A+VL ACA L AL LG+E+H
Sbjct: 414 DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELH 473
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ G Y+GSA++DMYAKCG LD + F + +K+ CWNS+I + +G
Sbjct: 474 GHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPE 533
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M + + V+ + LSAC + + G+ M G + ++ +
Sbjct: 534 EAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESAL 592
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+D+ SK G L+ A + + + + N V W +++ H L+
Sbjct: 593 IDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAAYGNHGRLK 634
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++D + W M+ Y +N + A F EM+ + +P+ VT A VLS CA ++ G
Sbjct: 208 MPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V+ G ++D + + L+ MYAKCG L + +F + + +L WN +I G +
Sbjct: 268 SQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF EA +F MI ++P+ +TF S L + + +G+
Sbjct: 328 GFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGK 369
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 20/229 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI+ Y QN EA F+EM ++ + PD +T ++ L + L G
Sbjct: 309 MPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G +DV++ SAL+D+Y KC ++ + +F + ++ ++I G ++
Sbjct: 369 KEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + AL +F ++ E + N VT SVL AC AGL ++T G + +
Sbjct: 429 GMNNNALEIFRWLLQERMRANSVTLASVLPAC--AGLA--------ALTLGKELHGHILK 478
Query: 181 YG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
G ++D+ +K G L+ A + +AV W +++ C
Sbjct: 479 NGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSC 526
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 4/212 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI ++ QF AL + +M G PD+ T V+ AC L ++ LGR +H +
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+GF++DV++GS+L+ Y++ G + + +F ++ K+ WN ++ G +G A
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATG 234
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
+F M PN VTF VLS C ++ G + L ++ G + V + ++ +
Sbjct: 235 VFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN--TLLAM 292
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+K G L DA L + + V W ++ G
Sbjct: 293 YAKCGHLFDARRLFDMMP-KTDLVTWNGMISG 323
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ +SW ++I Y + + +++L+ F+ M GI PD VT ++SAC H G +D G
Sbjct: 612 MEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG 671
Query: 61 REIHLY---VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
IH + ++G + + +VD++ + G L+ + + + + W +++
Sbjct: 672 --IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGA 729
Query: 117 LAVHG 121
+HG
Sbjct: 730 CRLHG 734
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
+ ++L C L GR+ H ++ G + +G+ L+ MY CG+ + +F++LR
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 104 EKNLFC---WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
L+C WN +I G + G AL + +M+ P+ TF V+ AC V
Sbjct: 109 ---LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVAL 165
Query: 161 GRR-----RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
GR +F+ G+ + +V ++ S+ G + DA L + V+W
Sbjct: 166 GRVVHDKIQFM----GFEL--DVFVGSSLIKFYSENGCIHDARYLFDRMP-SKDGVLWNV 218
Query: 216 LLGG 219
+L G
Sbjct: 219 MLNG 222
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 214/322 (66%), Gaps = 4/322 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ +W +IT SQN+ F EA+ F M +G+ P+ T++ VLSAC HLG L +G
Sbjct: 152 MTERDVAAWNAIITGCSQNRLFAEAVGIFGRMVGTGLRPNATTISCVLSACGHLGMLKIG 211
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ IH + +GF V G L+DMY KCG+L+ + +F+++ +++L WNS+I LA
Sbjct: 212 KLIHCCAWRTCVGFGSSVLNG--LIDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLA 269
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG + A+++F+ M E VEP+ +TF+ +L+ACTH G V+EG + F M + I PE+
Sbjct: 270 LHGHSKCAISVFNEMRGEGVEPDVITFVGLLNACTHGGFVDEGIKYFELMQHEHGIEPEI 329
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+++LL +AG +DAL +I + + + + VIWG+LL C++HRN+E+A +A+ +L+
Sbjct: 330 EHYGCIINLLGRAGRFQDALNVISNMRIESDEVIWGSLLNACRVHRNVELAELAIRKLLE 389
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+PNN+ Y +L N+Y+E W EV K R M+E I K+ PG SWIE++RK+++F + D
Sbjct: 390 LDPNNANYVVMLANVYSEGGLWEEVRKARKFMEEENIGKKLPGCSWIEVDRKIHRFYSGD 449
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
+H S+ IY +L L ++L
Sbjct: 450 DAHSESENIYDTLEDLAASMEL 471
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ALV YA+ G + ++++F ++ E+++ WN+II G + + EA+ +F RM+ +
Sbjct: 130 TALVSGYARAGKIGDAIMLFERMTERDVAAWNAIITGCSQNRLFAEAVGIFGRMVGTGLR 189
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH--YGCMVDLLSKAGLLEDA 197
PN T VLSAC H G+++ G+ L C + ++D+ K G LE A
Sbjct: 190 PNATTISCVLSACGHLGMLKIGK---LIHCCAWRTCVGFGSSVLNGLIDMYGKCGNLEGA 246
Query: 198 LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ + W +L+ LH + + A NE+
Sbjct: 247 TWIFYEVS-DRSLTAWNSLINCLALHGHSKCAISVFNEM 284
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW++MI+ Y+QN F E L F EM+ SG PD+ T+ +V+SACA L AL+ G
Sbjct: 468 MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 527
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + G I+V +G+ L+DMY KCG ++ +L VF+ + EK + WN++I GLA++
Sbjct: 528 KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMN 587
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +L MF M +V PN +TF+ VL AC H GLV+EG+ F SM + I P V+H
Sbjct: 588 GLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKH 647
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A EL+ P+ WGALLG CK H + E+ +L+ L+
Sbjct: 648 YGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQ 707
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G+ LL N+YA +W +V +IR M + + K PG S IE +++F A DK+
Sbjct: 708 PDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLK-IPGCSMIEANGVIHEFLAGDKT 766
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D I L ++ +LKL Y P++ +L
Sbjct: 767 HPDMDAIEDMLVEMAMKLKLEGYTPDINEVL 797
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 55/286 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W+ +I C+ QN+ + EA+ F M G+ D+V + LSACA+L +++G
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 395
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSL---------------------------- 92
+ IH ++IG + + + +AL+ MY+KCG +
Sbjct: 396 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 455
Query: 93 ---DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
D + +F + EK++ W+S+I G A + E LA+F M +P+ T +SV+
Sbjct: 456 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 515
Query: 150 SACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE--- 199
SAC +E+G +R L++ T ++D+ K G +E ALE
Sbjct: 516 SACARLAALEQGKWVHAYIKRNGLTINVILGTT--------LIDMYMKCGCVETALEVFY 567
Query: 200 -LIRSSKFQPNAVIWGALLGG-----CKLHRNLEIAHIAVNELMIL 239
+I NA+I G + G + N++ H+ NE+ +
Sbjct: 568 GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFM 613
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 16 YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
Y Q A + M ++ + D T ++ AC+ + +++H +V+++GFD D
Sbjct: 188 YIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSD 247
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG------------------- 116
VY+ + L++ ++ C ++ + VF + + WNSI+ G
Sbjct: 248 VYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE 307
Query: 117 ------------LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
+ G EA +FD M+ E + VT+ ++++ + EE R
Sbjct: 308 RSIIASNSMIVLFGMRGLVVEACKLFDEML----EKDMVTWSALIACFQQNEMYEEAIRT 363
Query: 165 FLSM 168
F+ M
Sbjct: 364 FVGM 367
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D ISW ++I QN F E L F +M + I P+ V+ ++++ ACAHL L LG
Sbjct: 297 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+++ FD +V+I SALVDMYAKCG++ + +F K+ ++ W ++I G A+H
Sbjct: 357 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 416
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A++A+++F RM E V+PN V F++VL+AC+HAGLV+E + F SMT Y I P +EH
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 476
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y + DLL + G LE+A E I +P +W LL C++H+N+E+A +L ++
Sbjct: 477 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 536
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N+Y+ RW + K+R+AM++ G++K+ P SWIE++ KV+ F A DKS
Sbjct: 537 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKK-PACSWIEIKNKVHAFVAGDKS 595
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D I +L L EQ++ YV + +L
Sbjct: 596 HPYYDRINEALKVLLEQMEREGYVLDTTEVL 626
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDI+SW T+I+ +QN +AL EM N+ + PD T+++VL A L G
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y ++ G+D DV+IGS+L+DMYAKC +D S VF+ L + + WNSII G +
Sbjct: 256 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 315
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F +M+ ++PN V+F S++ AC H + G++ GY I +
Sbjct: 316 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH-----GYIIRSRFDG 370
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A + + + V W A++ G LH
Sbjct: 371 NVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALH 416
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 126/276 (45%), Gaps = 35/276 (12%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W ++I CY+ + F +L F +M SG PD +VL +C + L G +H
Sbjct: 72 LAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGC 131
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDR----------------------------SLL- 97
++++G D+Y +AL++MY+K SL+ SL
Sbjct: 132 IIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRK 191
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA-CTHAG 156
VF + ++++ WN++I G A +G +AL M M ++ P+ T SVL +
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
L++ ++ GY +V ++D+ +K ++D+ + Q + + W ++
Sbjct: 252 LLKGKEIHGYAIRNGYD--ADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSI 308
Query: 217 LGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
+ GC + + +++I ++PN+ + +++
Sbjct: 309 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIM 344
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 214/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++ T MI Y++ + E+ F++M+ G PD+V M T+++ACA LGA++
Sbjct: 162 MPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKA 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H YV + +DV +G+A++DMYAKCGS+D S +F ++ +KN+ W+++I H
Sbjct: 222 RLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYH 281
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M+ + PN +TFIS+L AC+HAGLV++G + F M+ Y + P+V+H
Sbjct: 282 GQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKH 341
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L+ AL LI + + + + IW A LG C++HR +++A A L+ L+
Sbjct: 342 YTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQ 401
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G+ LL N+YA RW +V KIR M + + K+ PG +WIE++ +Y+F A D S
Sbjct: 402 TQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRL-KKIPGYTWIEVDNIIYRFGAGDNS 460
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S+EIY L L ++L+ A YVP+ ++L
Sbjct: 461 HLRSNEIYEMLKSLSQKLESAGYVPDTNSVL 491
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 8/254 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW+ MI + +N + F E+ +G PD ++ V+ AC L +G
Sbjct: 61 MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG 120
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V++ G +D ++ S LVDMYAKCG +D + +F ++ +K+L +I G A
Sbjct: 121 RLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +E+ +FD+M + P+ V +++++AC G + + R C + +VE
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKA-RLVHDYVCARRYSLDVEL 239
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN----LEIAHIAVNEL 236
M+D+ +K G ++ + E+ + Q N + W A++G H LE+ H+ +N
Sbjct: 240 GTAMIDMYAKCGSIDSSREIFDRME-QKNVISWSAMIGAYGYHGQGREALELFHMMLNSG 298
Query: 237 MILEPNNSGYCTLL 250
+I PN + +LL
Sbjct: 299 II--PNRITFISLL 310
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V G D+ + + L+ M AK L + L+F K+ E++ W+ +I G +
Sbjct: 20 KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G F +I +P+ + V+ AC + GR L + +++
Sbjct: 80 GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGR---LIHSTVLKNGLHLDN 136
Query: 181 YGC--MVDLLSKAGLLEDALEL 200
+ C +VD+ +K G++++A +L
Sbjct: 137 FVCSTLVDMYAKCGMIDNAKQL 158
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 210/324 (64%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT +I Y+Q KQ EA++ F M+ GI PD V + +VLSAC LG +DLG
Sbjct: 168 MPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLG 227
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V++ G ++ + +A++DMY KCGS+ ++L VF + +K++ W ++I G A+H
Sbjct: 228 EWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALH 287
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F RM ENV PN +TF++VLS C+H GL + GR F +M Y I P VEH
Sbjct: 288 GLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEH 347
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L +A LI+ F+ NA IWGALL + H + E+ A+ L+ LE
Sbjct: 348 YGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELE 407
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YAE RW V ++R++M++ G+ + PG+S I+++ V++F + D S
Sbjct: 408 PHNSGNYILLSNIYAEQERWDAVRELRISMRDRGL-RNVPGASSIDVDGMVHEFTSRDGS 466
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP+ +I L ++ +K ++
Sbjct: 467 HPSLHKIREVLCAINSNIKSVGHI 490
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV + ++D Y K G L R+ +F + +N+ W +I A EA+ +F RM
Sbjct: 141 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 200
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
E +EP+GV +SVLSAC G+V+ G RF+ + E+ ++D+ K G
Sbjct: 201 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFV---LRRGLCQEIPLMNAIIDMYVKCG 257
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH----------RNLEIAHIAVNELMIL 239
++ ALE+ + Q + V W ++ G LH R +E +++ N++ L
Sbjct: 258 SVKKALEVFEGME-QKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFL 313
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW++MI+ Y+QN F E L F EM+ SG PD+ T+ +V+SACA L AL+ G
Sbjct: 333 MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 392
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + G I+V +G+ L+DMY KCG ++ +L VF+ + EK + WN++I GLA++
Sbjct: 393 KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMN 452
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +L MF M +V PN +TF+ VL AC H GLV+EG+ F SM + I P V+H
Sbjct: 453 GLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKH 512
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A EL+ P+ WGALLG CK H + E+ +L+ L+
Sbjct: 513 YGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQ 572
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G+ LL N+YA +W +V +IR M + + K PG S IE +++F A DK+
Sbjct: 573 PDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLK-IPGCSMIEANGVIHEFLAGDKT 631
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D I L ++ +LKL Y P++ +L
Sbjct: 632 HPDMDAIEDMLVEMAMKLKLEGYTPDINEVL 662
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 41/279 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W+ +I C+ QN+ + EA+ F M G+ D+V + LSACA+L +++G
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSL---------------------------- 92
+ IH ++IG + + + +AL+ MY+KCG +
Sbjct: 261 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 320
Query: 93 ---DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
D + +F + EK++ W+S+I G A + E LA+F M +P+ T +SV+
Sbjct: 321 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 380
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE----LIRSSK 205
SAC +E+G+ + +T V ++D+ K G +E ALE +I
Sbjct: 381 SACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 439
Query: 206 FQPNAVIWGALLGG-----CKLHRNLEIAHIAVNELMIL 239
NA+I G + G + N++ H+ NE+ +
Sbjct: 440 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFM 478
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI Y Q A + M ++ + D T ++ AC+ + +++H +V+
Sbjct: 46 WNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVL 105
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG------------ 116
++GFD DVY+ + L++ ++ C ++ + VF + + WNSI+ G
Sbjct: 106 KLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKH 165
Query: 117 -------------------LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+ G EA +FD M+ E + VT+ ++++ +
Sbjct: 166 IYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML----EKDMVTWSALIACFQQNEM 221
Query: 158 VEEGRRRFLSM 168
EE R F+ M
Sbjct: 222 YEEAIRTFVGM 232
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 205/317 (64%), Gaps = 1/317 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISWT MI+ Q K +AL+ FNEM+ S + PD+V ++TVLSAC LGAL+ GR +
Sbjct: 275 RDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWV 334
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + G + DV++G++LVDMYAKCG L+ SL +F K+ KNL WN++I G A+HG
Sbjct: 335 HEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHG 394
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL FDRM+ + PN V+FI VL AC H+GLV+EG + F SM Y ++P EHYG
Sbjct: 395 REALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGS 454
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL +AGL+ +A + ++ +P WGALL C+ HR ++ + + + LE +
Sbjct: 455 VVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELESSE 514
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N+YA RWA+V ++R M E G++K PGSS IE+ K +F K+H
Sbjct: 515 SGVYALLSNIYAVNHRWADVKRVRGLMSEKGLQKE-PGSSVIEVNGKTSEFVVGQKNHKN 573
Query: 304 SDEIYSSLSKLDEQLKL 320
DEI + LS L EQ+ L
Sbjct: 574 VDEICAMLSILMEQIYL 590
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 9/225 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD++SWT +++ + + +F EAL +M + P++ T+A VL AC LGA G
Sbjct: 174 MASRDVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVACGRLGAARAG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + ++ D+ + +G+A++DMY KC LD + VF +L +++ W +I GL
Sbjct: 231 KAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQC 290
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
+AL +F+ M V+P+ V +VLSACT G +E GR ++ I +V
Sbjct: 291 KLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERK---GIEWDV 347
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G LE +L + R + N W AL+ G LH
Sbjct: 348 HVGTSLVDMYAKCGCLETSLSIFRKMPLK-NLSSWNALINGFALH 391
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 39 PDQVTMATVLSACAHLGALDL------GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
PD T+ L ACA LGA GR++H + GF + + +ALV +Y CG
Sbjct: 105 PDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGEC 164
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ VF ++ +++ W +++ G EAL + +M +V PN T VL AC
Sbjct: 165 GDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLVAC 221
Query: 153 THAGLVEEGR 162
G G+
Sbjct: 222 GRLGAARAGK 231
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++ SW +I ++ + REAL+ F+ M SG++P++V+ VL AC H G + G
Sbjct: 373 MPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEG 432
Query: 61 REIHLYVMQIGFDI---DVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEG 116
++ M+ + + + + GS +VD+ + G + + V + + +F W +++
Sbjct: 433 LQL-FESMKNSYKLSPWEEHYGS-VVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSA 490
Query: 117 LAVH 120
H
Sbjct: 491 CQAH 494
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 210/334 (62%), Gaps = 7/334 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +I Y+QN + EA+ F +K I P T +L+ACA+L L LG
Sbjct: 345 MMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R+ H ++++ GF D D+++G++L+DMY KCG ++ LVF ++ E++ WN++I
Sbjct: 405 RQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMI 464
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G+ EAL +F M+ P+ VT I VLSAC+HAGLVEEGR F SMT + +
Sbjct: 465 VGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGL 524
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CMVDLL +AG L++A LI++ +P+AV+WG+LL CK+H N+ +
Sbjct: 525 VPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAE 584
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L+ ++P NSG LL NMYAE+ RW +V ++R M+++G+ K+ PG SWI ++ ++ F
Sbjct: 585 RLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQ-PGCSWISIQSHLHVF 643
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPELE 328
DK HP +IY L L EQ+K YVPE +
Sbjct: 644 MVKDKRHPHKKDIYLILKILTEQMKRVGYVPEAD 677
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+I+SW ++ITCY QN +AL+ F M N GI PD++T+A+V SACA L A+ G
Sbjct: 212 MDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREG 271
Query: 61 REIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK------------------ 101
+IH VM+ + D+ +G+ALVDMYAKC ++ + LVF +
Sbjct: 272 LQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAK 331
Query: 102 -------------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+ E+N+ WN++I G +G EA+ +F + E++ P TF ++
Sbjct: 332 ASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNL 391
Query: 149 LSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRS 203
L+AC + ++ GR+ L + + + + ++D+ K GL+ED L+
Sbjct: 392 LNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDG-RLVFE 450
Query: 204 SKFQPNAVIWGALLGG 219
+ + V W A++ G
Sbjct: 451 RMLERDNVSWNAMIVG 466
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 92/161 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD SW M++ ++Q +F EAL +M + ++ + + LSACA L L +G
Sbjct: 111 MPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIG 170
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH + + + +DVY+GSALVDMY+KC + + F + +N+ WNS+I +
Sbjct: 171 VQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQN 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
G A +AL +F RM+ +EP+ +T SV SAC + EG
Sbjct: 231 GPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREG 271
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D A +L C ++ R +H +++ F +++I + LVD+Y KCG L+ + VF
Sbjct: 18 DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
++++N F WN+++ L G EAL +F M
Sbjct: 78 DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM 111
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W M+T Y + + REAL F+EM+ +G++ +VT+ +VL+ACA +GAL+ G
Sbjct: 216 MPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERG 275
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H YV G + V +G+ALVDMY+KCG + S+ VF +RE+N++ W S + GLA++
Sbjct: 276 MWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMN 335
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L +F RM +EPNGVTF++VL C+ AGLVEEGR F SM + + P +EH
Sbjct: 336 GMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEH 395
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+DA++ I S +P+ +WGALL ++H N+++ A+++L +E
Sbjct: 396 YGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIE 455
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YAE W V+K+R MK G+ K+ PG S IE++ KV++F KS
Sbjct: 456 SKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGV-KKMPGCSAIEVDGKVHEFFVGSKS 514
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +I + L+++ +L+L Y + +L
Sbjct: 515 HPRYKDIQTMLAEMSHRLRLQGYAANTKEVL 545
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A++ + G +D + +F + +++ WN+++ G G + EAL +FD M
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQ 248
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
V + VT +SVL+AC G +E G S C + V +VD+ SK G++
Sbjct: 249 KAGVAVSEVTLVSVLTACAQMGALERG-MWVHSYVCSRGMRVSVTLGTALVDMYSKCGVV 307
Query: 195 EDALELIRSSKFQPNAVIWGALLGG 219
++E+ + + + N W + L G
Sbjct: 308 TMSMEVFETMR-ERNIYTWTSALSG 331
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 212/334 (63%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP RD +SW T+IT Y QN EA+ ++ M K+ G+ P Q T +VL A +HLGAL
Sbjct: 333 MPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQ 392
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H ++ G ++DVY+G+ ++D+YAKCG LD ++L+F + ++ WN++I G+ V
Sbjct: 393 GTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGV 452
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL++F +M E + P+ VTF+S+L+AC+HAGLV++GR F M Y I P +
Sbjct: 453 HGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAK 512
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+ +AG L+DA + IR+ +P++ IWGALLG C++H N+E+ +A L L
Sbjct: 513 HYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFEL 572
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P N GY L+ NMYA+V +W V ++R ++ ++K PG S IE++R V F + ++
Sbjct: 573 DPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQK-TPGWSSIEVKRSVNVFYSGNQ 631
Query: 300 S--HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI L L +++ YVP+ +L
Sbjct: 632 MNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVL 665
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 137/226 (60%), Gaps = 6/226 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD+++W ++I+ + Q Q A++ F M++SG+SPD +T+ ++ SA A G + G
Sbjct: 231 MSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGG 290
Query: 61 REIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R +H Y+++ G+D+ D+ G+A+VDMYAK ++ + +F + ++ WN++I G
Sbjct: 291 RSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQ 350
Query: 120 HGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPE 177
+G A EA+ ++D M +E ++P TF+SVL A +H G +++G R LS+ G ++ +
Sbjct: 351 NGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNL--D 408
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V C++DL +K G L++A+ L + + W A++ G +H
Sbjct: 409 VYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP-WNAVISGVGVH 453
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 1/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ +W M++ +N + EA+ F M G++ D VT+++VL C LG L
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALA 189
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+HLY ++ G D ++++ +A++D+Y K G L+ VF + ++L WNSII G
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ MF M V P+ +T +S+ SA G + GR M ++
Sbjct: 250 GQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIA 309
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K +E A + S + +AV W L+ G
Sbjct: 310 GNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLITG 347
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLV 98
D T +L A G ++H +++G D + ALV Y + G + +
Sbjct: 70 DAFTFPPLLRAAQGPGT---AAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F ++R +++ WN+++ GL + A EA+ +F RM+ E V + VT SVL C G
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLG-- 184
Query: 159 EEGRRRFLSM---TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
R L+M + + E+ M+D+ K G+LE+ ++ + + V W +
Sbjct: 185 --DRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSR-DLVTWNS 241
Query: 216 LLGG 219
++ G
Sbjct: 242 IISG 245
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D ISW ++I QN F E L F +M + I P+ V+ ++++ ACAHL L LG
Sbjct: 257 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 316
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+++ FD +V+I SALVDMYAKCG++ + +F K+ ++ W ++I G A+H
Sbjct: 317 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 376
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A++A+++F RM E V+PN V F++VL+AC+HAGLV+E + F SMT Y I P +EH
Sbjct: 377 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 436
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y + DLL + G LE+A E I +P +W LL C++H+N+E+A +L ++
Sbjct: 437 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 496
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N+Y+ RW + K+R+AM++ G++K+ P SWIE++ KV+ F A DKS
Sbjct: 497 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKK-PACSWIEIKNKVHAFVAGDKS 555
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D I +L L EQ++ YV + +L
Sbjct: 556 HPYYDRINEALKVLLEQMEREGYVLDTTEVL 586
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDI+SW T+I+ +QN +AL EM N+ + PD T+++VL A L G
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG 215
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y ++ G+D DV+IGS+L+DMYAKC +D S VF+ L + + WNSII G +
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F +M+ ++PN V+F S++ AC H + G++ GY I +
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH-----GYIIRSRFDG 330
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A + + + V W A++ G LH
Sbjct: 331 NVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALH 376
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M SG PD +VL +C + L G +H ++++G D+Y +AL++MY+K S
Sbjct: 1 MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60
Query: 92 LD 93
L+
Sbjct: 61 LE 62
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 84 DMYAK-------CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
D+Y+K GSL + VF + ++++ WN++I G A +G +AL M M
Sbjct: 134 DVYSKKEKESYYLGSLRK---VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNA 190
Query: 137 NVEPNGVTFISVLSA-CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
++ P+ T SVL + L++ ++ GY +V ++D+ +K ++
Sbjct: 191 DLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYD--ADVFIGSSLIDMYAKCTRVD 248
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
D+ + Q + + W +++ GC + + +++I ++PN+ + +++
Sbjct: 249 DSCRVFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIM 304
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 213/325 (65%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT+MI+ Y+ N E L F+ M++SG+ P++V++ +VL AC +LGAL G
Sbjct: 879 MAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG 938
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H YV+Q GF+ D+ + +A++DMY+KCGSLD + +F + K+L CW+++I +H
Sbjct: 939 EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIH 998
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +FD+M+ V P+ VTF VLSAC+H+GL+EEG+ F MT + I ++ +
Sbjct: 999 GHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN 1058
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A++LI + +P+A IWG+LLG C++H NL++A + L L+
Sbjct: 1059 YACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLD 1118
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++GY LL N+YA SRW EV K+R M G K G S +E + +V++F D+S
Sbjct: 1119 PVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANK-IQGFSLVEYDNQVHKFGVGDRS 1177
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP +++Y+ L +L +K YVP
Sbjct: 1178 HPQWEKLYAKLEELAAPMKHLGYVP 1202
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 209/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW +++ Y+QN +++ F M + GI PD V + +L+A + LG
Sbjct: 368 LPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA 427
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H YV++ GF+ +V++G++L+++Y+KCGSL ++ +F + +++ W+S+I +H
Sbjct: 428 LCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIH 487
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL +FD+M+ + V PN VTF+S+LSAC+HAGLVEEG + F M Y + P+ E
Sbjct: 488 GRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSE 547
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+G MVDLL + G L A+++I +WGALLG C++H N+E+ A L L
Sbjct: 548 HFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWL 607
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+++GY LL N+YA +W V ++R +KE G+ K+ G S +E+ V+ F ASD+
Sbjct: 608 DPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGL-KKMFGQSMVEVRGGVHSFLASDR 666
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S +IY L KL+ Q+ Y+P+L+ +L
Sbjct: 667 FHPDSQKIYELLRKLEAQMGKEVYIPDLDFLL 698
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 143/260 (55%), Gaps = 19/260 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ISW+TMI CY+ N+ EAL+ F+EM P+ VT+ + L ACA L+ G
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 326
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH + GF++D + +AL+DMY KC D ++ +F +L +K++ W +++ G A +
Sbjct: 327 KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQN 386
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC--GYSI---- 174
G A++++ +F M+ + ++P+ V + +L+A + G+ ++ C GY +
Sbjct: 387 GMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA-------LCLHGYVVRSGF 439
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAH 230
V +++L SK G L DA++L + + + VIW +++ +H LEI
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFD 498
Query: 231 IAVNELMILEPNNSGYCTLL 250
V + PNN + ++L
Sbjct: 499 QMVKNSTV-RPNNVTFLSIL 517
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 2/215 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI ++ + +F +L+ +++M G+ PD+ L +CA L L G+ IH +++
Sbjct: 786 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
G D+++ +ALVDMYAKCG ++ + LVF K+ ++L W S+I G A +G+ E L
Sbjct: 846 CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
FD M V PN V+ +SVL AC + G + +G F S ++ ++D+
Sbjct: 906 FFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMY 964
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G L+ A L + + + V W A++ +H
Sbjct: 965 SKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIH 998
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 123/217 (56%), Gaps = 5/217 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D + WT+M+T Y QN EAL F++M + D VT+ +V+SACA L + G +
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCV 228
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ FD D+ + ++L+++YAK G + +F K+ EK++ W+++I A + A
Sbjct: 229 HGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAA 288
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
+EAL +F MI + EPN VT +S L AC + +EEG++ +++ G+ + V
Sbjct: 289 NEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS--T 346
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K ++A++L + + + V W ALL G
Sbjct: 347 ALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 143/299 (47%), Gaps = 47/299 (15%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLG 60
P ++ W + + Y + KQ+ E L F+ M +G +PD T+ L ACA L L+LG
Sbjct: 63 PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 61 REIHLYVM---QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+ IH + +IG D+ ++GSALV++Y+KCG + +L VF + + + W S++ G
Sbjct: 123 KVIHGFAKKNDEIGSDM--FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGY 180
Query: 118 AVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEG--------RRRF--- 165
+ EALA+F +M+ + V + VT +SV+SAC V+ G RR F
Sbjct: 181 QQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGD 240
Query: 166 ---------LSMTCG--------YSITPE--VEHYGCMVDLLSKAGLLEDALELIR---S 203
L G +S PE V + M+ + +AL L
Sbjct: 241 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE 300
Query: 204 SKFQPNAVIWGALLGGCKLHRNLE----IAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258
+F+PN+V + L C + RNLE I IAV + L+ + S T L++MY + S
Sbjct: 301 KRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS---TALIDMYMKCS 356
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 13/205 (6%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H V + G D + + L +YAKC SL + VF + N+ WNS +
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 122 FAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E L +F MI E P+ T L AC ++E G+ I ++
Sbjct: 82 QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQ-PNAVIWGALLGGCKLHRNLE-----IAHIAVN 234
+V+L SK G + +AL++ +FQ P+ V+W +++ G + + + E + + +
Sbjct: 142 GSALVELYSKCGQMGEALKVFE--EFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199
Query: 235 ELMILEP----NNSGYCTLLLNMYA 255
+ ++L+P + C LLN+ A
Sbjct: 200 DCVVLDPVTLVSVVSACAQLLNVKA 224
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H + G D I + MY +D + +VF + F WN +I G A
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS---MTCGYSITPE 177
G +L ++ +M+ + ++P+ F L +C AGL + R + + + CG S
Sbjct: 797 GRFLSSLELYSKMMEKGLKPDKFAFPFALKSC--AGLSDLQRGKVIHQHLVCCGCSNDLF 854
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V+ +VD+ +K G +E A L+ + V W +++ G
Sbjct: 855 VD--AALVDMYAKCGDIE-AARLVFDKMAVRDLVSWTSMISG 893
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 214/324 (66%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ ++SW +++ +S NK+ A F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 451 GQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 510
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG + SLLVF K+ +++ WN++I G A+HG
Sbjct: 511 IHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGL 570
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM ENV PN TF++VL AC+H GL ++G R F MT Y + P++EH+
Sbjct: 571 GVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFA 630
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++A++ I S FQ +AVIW LL CK+ +++EIA +A + +++L+P+
Sbjct: 631 CMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPD 690
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YAE +WA+V++ R +K+ G K+ PG SWIE + +++ F DK+HP
Sbjct: 691 DSSVYILLSNVYAESGKWADVSRTRRLLKQ-GRLKKEPGCSWIEAQSEMHGFLVGDKAHP 749
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S E+Y L+ L ++KL+ Y P+
Sbjct: 750 RSGELYEMLNDLIGEMKLSGYEPD 773
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 1/197 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +++ Y Q F+E++D F EM G+SPD+ T A +L +C+ L L LG
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLG 168
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G +IDV GSALVDMY KC SLD +L F+ + E+N W S I G +
Sbjct: 169 VQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQN 228
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
L +F M + + ++ S +C + G R+ + + +
Sbjct: 229 EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG-RQLHAHAIKNKFSSDRVV 287
Query: 181 YGCMVDLLSKAGLLEDA 197
+VD+ +KA L DA
Sbjct: 288 GTAIVDVYAKANSLTDA 304
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 34/268 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW + I QN+Q+ L+ F EM+ G+ Q + A+ +CA + L+ G
Sbjct: 210 MPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTG 269
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ F D +G+A+VD+YAK SL + FF L + N+++ GL
Sbjct: 270 RQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLF-- 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
MI ++ + V+ V SAC T GY +V
Sbjct: 328 ------------MIRSSIRFDVVSLSGVFSACAE--------------TKGYFPGQQVHC 361
Query: 181 YG--CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++DL K L +A + + K Q ++V W A++ + + + + + NE++
Sbjct: 362 LAIKSVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 420
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKI 266
++ + +++MY + E K+
Sbjct: 421 F---DAFVASTVVDMYCKCGIIDEAQKL 445
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 53/257 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW +I QN + + + FNEM
Sbjct: 387 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEM---------------------------- 418
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
D ++ S +VDMY KCG +D + + ++ + + WN+I+ G +++
Sbjct: 419 -----------LRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 467
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
+ A F M+ ++P+ TF +VL C + +E G++ G I E+
Sbjct: 468 KESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ-----IHGQIIKQEMLD 522
Query: 179 EHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ Y +VD+ +K G + D+L L+ + + V W A++ G LH L + + + E
Sbjct: 523 DEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALH-GLGVEALRMFER 580
Query: 237 MILE---PNNSGYCTLL 250
M E PN++ + +L
Sbjct: 581 MQKENVVPNHATFVAVL 597
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ ++ Y+ G + ++ +F + + ++ WN+++ G G E++ +F M V
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146
Query: 140 PNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
P+ TF +L +C+ + G + L++ G I +V +VD+ K L+DAL
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEI--DVRTGSALVDMYGKCRSLDDAL 204
Query: 199 ELIRSSKFQPNAVIWGALLGGC 220
+ N V WG+ + GC
Sbjct: 205 CFFYGMP-ERNWVSWGSAIAGC 225
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 207/335 (61%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALD 58
M R+I+SWT MI+ Y+QN +AL F+EM G + P+ VT+ +VL ACA AL+
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEG 116
GR IH + IG ++ + +AL MYAKC SL + F + + KNL WN++I
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A HG EA+++F+ M+ V+P+ VTF+ +LS C+H+GL++ G F M +S+ P
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
VEHY C+VDLL +AG L +A ELI Q +WGALL C+ HRNLEIA +A L
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+LEP+NSG LL N+YAE W EV K+R +K G+ K+ PG SWIE+ K + F
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGM-KKSPGCSWIEINGKSHLFMG 571
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+DKSHP + EIY L L E++K+A Y+P+ +L
Sbjct: 572 ADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVL 606
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 33/171 (19%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
L+A+ M G+ D T+ VL +CA L + +GR +H +++G + D Y+G++L+DM
Sbjct: 166 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 225
Query: 86 YAKCGSLD--RSLL-----------------------------VFFKLREKNLFCWNSII 114
Y KCG + R L +F ++ +N+ W ++I
Sbjct: 226 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 285
Query: 115 EGLAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGRR 163
G +GFA +AL +FD M+ + E PN VT +SVL AC + +E GRR
Sbjct: 286 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRR 336
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 109/280 (38%), Gaps = 36/280 (12%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P + A + + LG++ H ++ G + ++ + +V MYA G LD +++V
Sbjct: 75 PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134
Query: 99 FFKLREKNLFCWNSIIEGLAVHG---FAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
F ++ + +NSII HG L + RM + + + T VL +C
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
V GR G + E + Y ++D+ K G++ DA +L + A W
Sbjct: 195 SRVCMGR---CVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMAS-W 250
Query: 214 GALLGGC----------KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV------ 257
AL+ G L +E +I MI +G+ L ++ E+
Sbjct: 251 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 310
Query: 258 --SRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
W + + A C S+ +E R+++ FA
Sbjct: 311 MKPNWVTIVSVLPA---------CAQSAALERGRRIHDFA 341
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 145/320 (45%), Positives = 206/320 (64%), Gaps = 4/320 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++ WT MI Y Q +F +A+ F EM+ +SPD+ T+ +L+ CA LG L+ G+
Sbjct: 326 PVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGK 385
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH Y+ + ID +G+AL++MYAKCG +++SL +F L+EK+ W SII GLA++G
Sbjct: 386 WIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNG 445
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F M+ V+P+ +TFI VLSAC+H GLVEEGR+ F SMT Y I P++EHY
Sbjct: 446 KTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHY 505
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVI---WGALLGGCKLHRNLEIAHIAVNELMI 238
GC++DLL +AG L++A ELI S N VI +GALL C+ H N+E+ L+
Sbjct: 506 GCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVG 565
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E +S TLL N+YA RW +VTK+R MK+LG+ K+ PG S +E+ V++F D
Sbjct: 566 IESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGV-KKVPGCSSVEVNGIVHEFLVGD 624
Query: 299 KSHPASDEIYSSLSKLDEQL 318
SHP EIYS L + + L
Sbjct: 625 ASHPEMREIYSMLDSIAKPL 644
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 45/260 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP RD++SW +I+ Y + +++ +A+D F M+ S + P++ T+ + LSAC L L+L
Sbjct: 193 MPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLEL 252
Query: 60 GREIHLYVM-QIGFDIDVYIGSALVDMYAK------------------------------ 88
G+EIH YV Q+GF I IG+ALVDMY K
Sbjct: 253 GKEIHRYVREQLGFTIK--IGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYV 310
Query: 89 -CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
CG LD + +F + +++ W ++I G +A+A+F M + V P+ T ++
Sbjct: 311 NCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVA 370
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
+L+ C G +E+G+ GY I + ++++ +K G +E +LE+
Sbjct: 371 LLTGCAQLGTLEQGK-----WIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNG 425
Query: 204 SKFQPNAVIWGALLGGCKLH 223
K + + W +++ G ++
Sbjct: 426 LK-EKDTASWTSIICGLAMN 444
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 137/276 (49%), Gaps = 16/276 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I +++N FR+A+ F +++ G+SPD T V A LG + G +++ +V+
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVV 159
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G + D Y+ ++L+DMYA+ G + VF ++ ++++ WN +I G +A+
Sbjct: 160 KSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVD 219
Query: 129 MFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGCMV 185
+F RM + ++ PN T +S LSAC ++E G+ R++ G++I +V
Sbjct: 220 VFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIG----NALV 275
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP-NNS 244
D+ K G L A E+ + + W +++ G L+ A EL P +
Sbjct: 276 DMYCKCGHLSIAREIFNDMPIK-TVICWTSMVSGYVNCGQLDEAR----ELFERSPVRDV 330
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCP 280
T ++N Y + +R+ + + +E+ I++ P
Sbjct: 331 VLWTAMINGYVQFNRFDDAVAL---FREMQIKRVSP 363
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 222/334 (66%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW+ MI CY++N++ +A+ F EM ++ + P+ +T+ +VL ACA + AL
Sbjct: 416 MPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALG 475
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGL 117
G+ +H Y+++ GFD+ V + +AL+ MY KCG L+ +F + R +N+ WNS+I G
Sbjct: 476 QGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGY 535
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+HGF E+L +F+ MI E + PN +TF+SVL AC+H GLVE+G++ F SM Y++TP
Sbjct: 536 GMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPR 594
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
EHY CMVDLL +AG L++A+ELI+S + QP+ +WG+LLG C++H ++E A +A + L
Sbjct: 595 AEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLF 654
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
LEP N+G LL ++YA +V ++ ++E +EK PG SWIE+++K+Y F +
Sbjct: 655 DLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEK-VPGCSWIEVKKKLYSFVSV 713
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D +P +E+ + + + Q+K YVP+ ++L
Sbjct: 714 DNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVL 747
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 14/232 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-----AHLGA 56
P ++I W M+ + EAL +M G+ D + A L AC +HL A
Sbjct: 311 PVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPA 370
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+H + ++ G+ + ++ + L+D YAK G + + VF + ++NL W+++I
Sbjct: 371 SARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGC 430
Query: 117 LAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGRRRFLS---MTCG 171
A + +A+ +F M+ + + PN +T +SVL AC AG+ G+ + L + G
Sbjct: 431 YAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHAC--AGVNALGQGKVLHAYILRRG 488
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + V ++ + K G LE + + N V W +L+ G +H
Sbjct: 489 FDLLVSV--LNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMH 538
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYV-MQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+P Q T ++L A A L +H + F D ++ + L++ YA +L +
Sbjct: 245 APTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAAR 304
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF + KN+F WN++++ LA+ EAL M V + ++ L AC A
Sbjct: 305 QVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAAS 364
Query: 157 ---LVEEGRRRFL---SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
L R R + ++ GY + V ++D +K G++ A E + +S N
Sbjct: 365 ASHLPASARVREMHAHAIRRGYGLHTHVA--TTLIDCYAKLGIVSYA-ERVFTSMPDRNL 421
Query: 211 VIWGALLG 218
V W A++G
Sbjct: 422 VSWSAMIG 429
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 205/323 (63%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW ++I C Q Q+ EA++ F+ M SG+ PD T+ ++LS C++ G L LG
Sbjct: 330 MPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALG 389
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H Y+ + V + ++L+DMYAKCG+L ++ +FF + EKN+ WN II LA+H
Sbjct: 390 KQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALH 449
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA+ MF M + P+ +TF +LSAC+H+GLV+ GR F M + I+P VEH
Sbjct: 450 GFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEH 509
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G L +A+ LI+ +P+ V+WGALLG C+++ NLEIA + +L+ L
Sbjct: 510 YACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELG 569
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL NMY+E RW ++ KIR M + GI K+C S+IE++ YQF DK
Sbjct: 570 RFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGI-KKCRAISFIEIDGCCYQFMVDDKR 628
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
H AS IYS L +L + LK Y
Sbjct: 629 HCASTGIYSILDQLMDHLKSVGY 651
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 33/251 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R I+SW +MI YS+ EA+ F EM G+ D T+ ++LSA + LDLGR +
Sbjct: 201 RTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFV 260
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSL------------------------------- 92
HLY++ G +ID + +AL+DMYAKCG L
Sbjct: 261 HLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLV 320
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ ++ +F + KN+ WNSII L G EA+ +F RM V P+ T +S+LS C
Sbjct: 321 ENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCC 380
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
++ G + G++ + C IT V ++D+ +K G L+ A+++ + N V
Sbjct: 381 SNTGDLALGKQAHCYI-CDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP-EKNVVS 438
Query: 213 WGALLGGCKLH 223
W ++G LH
Sbjct: 439 WNVIIGALALH 449
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + +I YS + ++L F +M ++G P+Q T VL ACA
Sbjct: 97 IPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEA 156
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++G + +A++ Y C + + VF + ++ + WNS+I G +
Sbjct: 157 VIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKM 216
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF EA+ +F M+ VE + T +S+LSA + ++ GR L + G I V
Sbjct: 217 GFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVT 276
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ ++D+ +K G L+ A + + + V W +++
Sbjct: 277 N--ALIDMYAKCGHLQFA-KHVFDQMLDKDVVSWTSMV 311
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
SP T+ +L C+ + L L +H ++ G V L+ + + G L + L
Sbjct: 36 SPTHQTLHHLLDQCSSMKRLKL---VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHL 92
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+F ++ + N F +N +I G + ++L +F +M+ PN TF VL AC
Sbjct: 93 LFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKAC 147
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 219/334 (65%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK--NSGISPDQVTMATVLSACAHLGALD 58
MPARD ++W +I+C ++N++ ++AL F EM+ +SG PD VT +L AC LGALD
Sbjct: 180 MPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALD 239
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++ Y + G+ + + ++L+ MY++CG +D++ VF +K++ W+++I GLA
Sbjct: 240 FGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLA 299
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+GF +A++ F+ MI +V P+ TF VLSAC+H+GLV+EG R F M C Y + P V
Sbjct: 300 ANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 359
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
HYGC+VDL+ +AGLL++A EL+ + K P+A IW LLG C++H ++++ ++ L+
Sbjct: 360 RHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLI 419
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN YA V W++V+++R M+E GI+ PG + +E +VY+F A
Sbjct: 420 ELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQT-TPGCTTVEHNGEVYEFIAD 478
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D +HP EIY L+++++QL++A YVP + + L
Sbjct: 479 DDAHPRKVEIYEKLNEINKQLRIAGYVPNVSSEL 512
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 11/200 (5%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSA-CAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
+AL M+ G + T+A +L CA L R++H V+ G D + ++L
Sbjct: 105 DALRFLRRMRALGRRGNAFTLAILLKPRCA----LAHARQLHANVVAEGHLRDALLATSL 160
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--VEP 140
+ YA G D + +F ++ ++ WN +I A + +AL +F+ M + EP
Sbjct: 161 MACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEP 220
Query: 141 NGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
+ VT I +L ACT G ++ G + + + GY +V + ++ + S+ G ++ A
Sbjct: 221 DDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRN--SLIAMYSRCGCVDKAYR 278
Query: 200 LIRSSKFQPNAVIWGALLGG 219
+ + Q + V W A++ G
Sbjct: 279 VFCGTP-QKSVVTWSAMISG 297
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+ T+MIT SQ A+ F EM G+ PD ++++L+ACA L A + G+++H
Sbjct: 469 DIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F D + G+ALV YAKCGS++ + L F L E+ + W+++I GLA HG
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E + PN +T SVL AC HAGLV+E +R F SM + I EHY CM
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG L+DA+EL+ S FQ NA +WGALLG ++H++ E+ +A +L ILEP S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W EV K+R MK+ I+K P SW+E++ KV+ F DKSHP +
Sbjct: 709 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE-PAMSWVEVKDKVHTFIVGDKSHPMT 767
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
EIYS L +L + + A Y+P ++ L
Sbjct: 768 KEIYSKLDELGDLMSKAGYIPNVDVDL 794
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 123/217 (56%), Gaps = 2/217 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW +++ Y +N Q +A+ F EM SGI P + + V++AC +D GR++
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 224
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++G++ DV+ +ALVDMY K G +D + ++F K+ + ++ WN++I G ++G
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
H A+ + +M + PN S+L AC AG + GR+ M + + + G
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG- 343
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+VD+ +K L+DA+++ + + ++W AL+ GC
Sbjct: 344 LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 379
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +I+ N A++ +MK+SG+ P+ ++++L ACA GA DLG
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++++ D D YIG LVDMYAK LD ++ VF + ++L WN++I G +
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
G EA ++F + E + N T +VL +
Sbjct: 383 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 48/338 (14%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++++T YS N R A+ AF+ M+ G+ ++ + VL + LG ++H
Sbjct: 69 VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAM 125
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHE 125
M GF DV++ +ALV MY G +D + VF + E+N WN ++ + +
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGD 185
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ +F M++ ++P F V++ACT + ++ G R+ +M +V +V
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALV 244
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL----HRNLEIAHIAVNELMILEP 241
D+ K G + D +I + V W AL+ GC L HR +E ++L+
Sbjct: 245 DMYVKMGRV-DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE---------LLLQM 294
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+SG L+ N++ S I K C G+ ++ R+++ F K++
Sbjct: 295 KSSG---LVPNVFMLSS----------------ILKACAGAGAFDLGRQIHGFMI--KAN 333
Query: 302 PASD--------EIYSSLSKLDEQLKLASYVPELEAML 331
SD ++Y+ LD+ +K+ ++ + +L
Sbjct: 334 ADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLIL 371
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 24/255 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I W +I+ S + EA F ++ G+ ++ T+A VL + A L A
Sbjct: 364 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASAT 423
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +IGF D ++ + L+D Y KC L ++ VF + ++ S+I L+
Sbjct: 424 RQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQC 483
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
A+ +F M+ + +EP+ S+L+AC E+G +R+F+S
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS----- 538
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEI 228
+ +V +K G +EDA EL SS + V W A++GG H R LE+
Sbjct: 539 ----DAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593
Query: 229 AHIAVNELMILEPNN 243
V+E + PN+
Sbjct: 594 FGRMVDEG--INPNH 606
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 6/175 (3%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T++ L+ A AL G +H +++ GF + + L+ Y+KC + VF ++
Sbjct: 6 TISQQLTRYAAAQALLPGAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEI 63
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ W+S++ + +G A+ F M E V N VL A L +
Sbjct: 64 PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL--GAQ 121
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++M G+ +V +V + G ++DA + + + NAV W L+
Sbjct: 122 VHAMAMATGFG--SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 174
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW MI Y+ ++EAL F EM SG+ P ++T ++L +CAHLGA+DLG
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + + + ++L+D+YAKCG++ + VF ++ K+L WN++I GLA+H
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A +F +M + +EPN +TF+ +LSAC HAGLV+ G++ F SM Y I+P+ +H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AGL E+A L+++ + +P+ IWG+LLG C+ H +E+ + L LE
Sbjct: 502 YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELE 561
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N G LL N+YA +W +V +IR + + G+ K+ PG + IE++ V++F DK
Sbjct: 562 PDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGM-KKVPGCTTIEVDNVVHEFLVGDKV 620
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S++IY L ++DEQLK+ +V + +L
Sbjct: 621 HPQSEDIYRMLEEVDEQLKVFGFVADTSEVL 651
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 135/252 (53%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW MI Y+Q + +EAL F +M+ + + P++ T+ +VLSACA ALDLG
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLG 280
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ ++ G ++ + +AL+DMY+KCG L + +F + E+++ WN +I G
Sbjct: 281 NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHM 340
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EALA+F M+ VEP +TF+S+L +C H G ++ G+ + ++
Sbjct: 341 CSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV-STSL 399
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++DL +K G + A ++ K + A W A++ G +H + A +++
Sbjct: 400 STSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQADKAFELFSKMSSDG 458
Query: 239 LEPNNSGYCTLL 250
+EPN + +L
Sbjct: 459 IEPNEITFVGIL 470
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 33/246 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ W +MI S + AL F M SG+ P+ T +L +CA L + G++IH
Sbjct: 93 NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF----------------------FKL 102
+V+++GF DV+I ++L++MYA+ G ++ + LVF +
Sbjct: 153 AHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMD 212
Query: 103 REKNLF---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
R + LF WN++I G A G + EAL +F+ M NV PN T +SVLSAC
Sbjct: 213 RARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACA 272
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ ++ G S + ++ ++D+ SK G L+ A EL + + + W
Sbjct: 273 QSNALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELF-DDMLERDVISW 330
Query: 214 GALLGG 219
++GG
Sbjct: 331 NVMIGG 336
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLRE 104
+LS C + ++IH ++++ G ++ S L++ A + G + ++ +F + E
Sbjct: 35 LLSKCQSIRTF---KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
NLF WNS+I GL++ AL F RMIY VEPN TF +L +C EG ++
Sbjct: 92 PNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEG-KQ 150
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR 224
+ +V + ++++ +++G + +A + S F+ +A+ + AL+ G L
Sbjct: 151 IHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR-DAISFTALIAGYALWG 209
Query: 225 NLEIAHIAVNELMI 238
++ A +E+ +
Sbjct: 210 YMDRARQLFDEMPV 223
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 211/331 (63%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW MI+ Y+Q+ Q EAL F +MK G ++ +A LS+CA + AL+LG
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ GF G+AL+ MY KCGS++ + VF + EK++ WN++I G A H
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARH 484
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EALA+F+ M ++P+ VT + VLSAC+H GLV++G F SM Y IT +H
Sbjct: 485 GFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKH 543
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++AL L++S F P+A WGALLG ++H + E+ A ++ +E
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME 603
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YA RW EV ++R M++ G+ K+ PG SW+E++ K + F D S
Sbjct: 604 PDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV-KKVPGYSWVEIQNKTHIFTVGDCS 662
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++ IY+ L +LD +LK +V + +L
Sbjct: 663 HPEAERIYAYLEELDLELKKDGFVSSTKLVL 693
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ W I+ Y + Q AL FN M+ VT ++S D R+
Sbjct: 59 DIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCARK-- 112
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V + D D+ + ++ Y K G+L + +F ++ EK++ WN+++ G A +GF
Sbjct: 113 --VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA +FD+M+ +N +++ +LSA G +E+ RR F S + E+ + C+
Sbjct: 171 EARKIFDQMLVKNE----ISWNGLLSAYVQNGRIEDARRLFDS-----KMDWEIVSWNCL 221
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + L+DA L + + + W ++ G
Sbjct: 222 MGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITG 255
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+ +WT M++ + QN EA F EM ++V+ +++ ++
Sbjct: 272 LPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKA 327
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE L+ + + + +V YA+CG++D++ ++F ++ +++ W ++I G A
Sbjct: 328 RE--LFDQMPSRNTSSW--NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +F +M + N LS+C +E G++ + T +
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG 443
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G +E+A ++ + + V W ++ G H
Sbjct: 444 -NALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARH 484
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 24/252 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW M++ Y +N A FN+M D V+ +LS A G ++
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGFVEEA 172
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+I M + +I + L+ Y + G ++ + +F + + WN ++ G
Sbjct: 173 RKI-FDQMLVKNEISW---NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A ++FDRM + +++ +++ GL+ E RR F + +V
Sbjct: 229 KRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRDVFA 279
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ MV + G+L++A + + N V W A++ G + +E A EL
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKAR----ELFDQM 334
Query: 241 P--NNSGYCTLL 250
P N S + T++
Sbjct: 335 PSRNTSSWNTMV 346
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 219/326 (67%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
M R ++SW TMI+ YSQN F++A++ F EMK I P+ VT+ +VL A + LG+L+L
Sbjct: 227 MRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLEL 286
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +HLY G ID +GSAL+DMY+KCG ++++++VF +L +N+ W+++I G A+
Sbjct: 287 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAI 346
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A +A+ F +M V P+ V +I++L+AC+HAGLVEEGRR F M + P +E
Sbjct: 347 HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIE 406
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL + GLL++A E I + +P+ VIW ALLG C++HRN+E+ N LM +
Sbjct: 407 HYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDM 466
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P++SG L NMYA W+EV+++R+ MKE+ I K PG SWI+++ +++F D
Sbjct: 467 VPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKD-PGCSWIDIDGVLHEFLVEDD 525
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
SHP + EI S L ++ ++L+LA Y P
Sbjct: 526 SHPRAKEINSMLVEISDKLRLAGYRP 551
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 53/273 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE--ALDAFNEM-KNSGISPDQVTMATVLSACAHLGAL 57
MP R+ SW T+I +S++ + + A+ F EM + I P++ T +VL ACA G +
Sbjct: 78 MPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKI 137
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF----------------- 100
G++IH ++ GF D ++ S LV MY CG + + ++F+
Sbjct: 138 QQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKR 197
Query: 101 ----------------------------KLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
K+R++++ WN++I G + +GF +A+ +F
Sbjct: 198 DGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFRE 257
Query: 133 MIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSK 190
M E++ PN VT +SVL A + G +E G L + G I + ++D+ SK
Sbjct: 258 MKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLG--SALIDMYSK 315
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G++E A+ ++ + N + W A++ G +H
Sbjct: 316 CGIIEKAI-MVFERLPRENVITWSAMINGFAIH 347
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 21/157 (13%)
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAV--HGFAHEALAMFDRMIY-ENVEPNGVTFIS 147
LD + +F ++ ++N F WN+II G + A A+ +F M+ E +EPN TF S
Sbjct: 67 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126
Query: 148 VLSACTHAGLVEEGRR-RFLSMTCGYS-----ITPEVEHY---GCMVD---LLSKAGLLE 195
VL AC G +++G++ L++ G+ ++ V Y G M D L K +
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186
Query: 196 DALELIRSSKFQPNAVIWGAL------LGGCKLHRNL 226
+ + +I K V+W + LG CK R L
Sbjct: 187 EMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARML 223
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 215/328 (65%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++WT +I+ +++ +EA +N+M+ +G+ PD T+ ++L+ACA G L LG
Sbjct: 277 MPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLG 336
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + +I V + +ALVDMYAKCG +D++L +F ++ ++L WN +++GLA+H
Sbjct: 337 KKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMH 396
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F +M E +P+ VT I++L ACTHAG V++G F SM + I P +EH
Sbjct: 397 GHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEH 456
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL + G LE+A L++S +PN VIWG LLG C++H + +A ++ L+ LE
Sbjct: 457 YGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLE 516
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++ G ++L N++A W V +R+ MK G++K G+S IE++ +V++F DKS
Sbjct: 517 QSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPS-GASSIELDDEVHEFTVFDKS 575
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP +D+IY L KL + LK +Y PE +
Sbjct: 576 HPETDKIYQILVKLGQDLKQVAYAPEAD 603
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ T+I + QN Q +A F +M+ +G+ D T +L AC G L + IH +V
Sbjct: 89 YNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVE 148
Query: 69 QIGFDIDVYIGSALVDMYAKCGSL--DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+ GF D+++ ++L+D Y+KCG L + ++ +F ++ EK+L WNS+I GL G A
Sbjct: 149 KYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRA 208
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCM 184
+FD M E + V++ ++L AG + + F M PE V + M
Sbjct: 209 RKLFDEM----AERDAVSWNTILDGYVKAGEMSQAFNLFEKM-------PERNVVSWSTM 257
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V K G +E A L F+ N V W ++ G
Sbjct: 258 VSGYCKTGDMEMARMLFDKMPFK-NLVTWTIIISG 291
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW +MI + A F+EM D V+ T+L ++ A ++
Sbjct: 184 MGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAER----DAVSWNTILDG--YVKAGEMS 237
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +L+ + +V S +V Y K G ++ + ++F K+ KNL W II G A
Sbjct: 238 QAFNLFEKMP--ERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEK 295
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA ++++M ++P+ T IS+L+AC +GL+ G++ S+ I V
Sbjct: 296 GLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIK-KIRIKCSVNV 354
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+VD+ +K G ++ AL + + + V W +L G +H + E A
Sbjct: 355 SNALVDMYAKCGRVDKALSIFNEMSMR-DLVSWNCMLQGLAMHGHGEKA 402
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H +++ D+Y+ L+ ++ C ++ ++ VF ++++ N+ +N++I +
Sbjct: 40 KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ +A A F M + + T+ +L AC G + + I VE
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQM----------IHCHVEK 149
Query: 181 YG---------CMVDLLSKAGLL--EDALELIRSSKFQPNAVIWGALLGG 219
YG ++D SK GLL A++L + + V W +++GG
Sbjct: 150 YGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMG-EKDLVSWNSMIGG 198
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+ T+MIT SQ A+ F EM G+ PD ++++L+ACA L A + G+++H
Sbjct: 376 DIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 435
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F D + G+ALV YAKCGS++ + L F L E+ + W+++I GLA HG
Sbjct: 436 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 495
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E + PN +T SVL AC HAGLV+E +R F SM + I EHY CM
Sbjct: 496 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 555
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG L+DA+EL+ S FQ NA +WGALLG ++H++ E+ +A +L ILEP S
Sbjct: 556 IDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKS 615
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W EV K+R MK+ I+K P SW+E++ KV+ F DKSHP +
Sbjct: 616 GTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE-PAMSWVEVKDKVHTFIVGDKSHPMT 674
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
EIYS L +L + + A Y+P ++ L
Sbjct: 675 KEIYSKLDELGDLMSKAGYIPNVDVDL 701
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 123/217 (56%), Gaps = 2/217 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW +++ Y +N Q +A+ F EM SGI P + + V++AC +D GR++
Sbjct: 72 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 131
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++G++ DV+ +ALVDMY K G +D + ++F K+ + ++ WN++I G ++G
Sbjct: 132 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 191
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
H A+ + +M + PN S+L AC AG + GR+ M + + + G
Sbjct: 192 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG- 250
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+VD+ +K L+DA+++ + + ++W AL+ GC
Sbjct: 251 LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 286
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +I+ N A++ +MK+SG+ P+ ++++L ACA GA DLG
Sbjct: 170 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG 229
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++++ D D YIG LVDMYAK LD ++ VF + ++L WN++I G +
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
G EA ++F + E + N T +VL +
Sbjct: 290 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 24/262 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I W +I+ S + EA F ++ G+ ++ T+A VL + A L A
Sbjct: 271 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASAT 330
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +IGF D ++ + L+D Y KC L ++ VF + ++ S+I L+
Sbjct: 331 RQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQC 390
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
A+ +F M+ + +EP+ S+L+AC E+G +R+F+S
Sbjct: 391 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS----- 445
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEI 228
+ +V +K G +EDA EL SS + V W A++GG H R LE+
Sbjct: 446 ----DAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 500
Query: 229 AHIAVNELMILEPNNSGYCTLL 250
V+E + PN+ ++L
Sbjct: 501 FGRMVDEG--INPNHITMTSVL 520
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 48/313 (15%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M+ G+ ++ + VL LG ++H M GF DV++ +ALV MY G
Sbjct: 1 MRAEGVCCNEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57
Query: 92 LDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+D + VF + E+N WN ++ + +A+ +F M++ ++P F V++
Sbjct: 58 MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
ACT + ++ G R+ +M +V +VD+ K G + D +I +
Sbjct: 118 ACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVKMGRV-DIASVIFEKMPDSDV 175
Query: 211 VIWGALLGGCKL----HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKI 266
V W AL+ GC L HR +E ++L+ +SG L+ N++ S
Sbjct: 176 VSWNALISGCVLNGHDHRAIE---------LLLQMKSSG---LVPNVFMLSS-------- 215
Query: 267 RVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD--------EIYSSLSKLDEQL 318
I K C G+ ++ R+++ F K++ SD ++Y+ LD+ +
Sbjct: 216 --------ILKACAGAGAFDLGRQIHGFMI--KANADSDDYIGVGLVDMYAKNHFLDDAM 265
Query: 319 KLASYVPELEAML 331
K+ ++ + +L
Sbjct: 266 KVFDWMSHRDLIL 278
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 206/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DIIS TTM+T SQ +A+ F +M G+ PD ++++L+AC L A + G+++H
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVH 533
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F DV+ G+ALV YAKCGS++ + + F L E+ + W+++I GLA HG
Sbjct: 534 AHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGK 593
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E V PN +T SVLSAC HAGLV++ ++ F SM + I EHY CM
Sbjct: 594 RALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACM 653
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+D+L +AG LEDA+EL+ + FQ NA +WGALLG ++HR+ E+ +A +L LEP S
Sbjct: 654 IDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKS 713
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W E+ K+R MK+ ++K P SW+E++ KV+ F DKSHP +
Sbjct: 714 GTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKE-PAMSWVEIKDKVHTFIVGDKSHPMT 772
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+IY L++L + + A YVP +E L
Sbjct: 773 RDIYGKLAELGDLMNKAGYVPNVEVDL 799
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW TMI+ Y +N Q +A+ F EM SG P++ + V++AC L+ GR++
Sbjct: 168 RNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQV 227
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ G++ DV+ +ALVDMY+K G ++ + VF K+ ++ WN+ I G HG
Sbjct: 228 HGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHD 287
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
H AL + +M + PN T SVL AC AG GR+ M + E G
Sbjct: 288 HRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG- 346
Query: 184 MVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGC 220
+VD+ +K G L+DA ++ F P + ++W AL+ GC
Sbjct: 347 LVDMYAKHGFLDDARKVF---DFMPRRDLILWNALISGC 382
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 1 MPARDIISWTTMIT-CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MPA D++SW I+ C + R AL+ +MK+SG+ P+ T+++VL ACA GA +L
Sbjct: 266 MPAADVVSWNAFISGCVTHGHDHR-ALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNL 324
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH ++++ D D ++ LVDMYAK G LD + VF + ++L WN++I G +
Sbjct: 325 GRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSH 384
Query: 120 HGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G E L++F RM E +++ N T SVL + + + R+ ++ + +
Sbjct: 385 DGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH-TRQVHALAEKIGLLSD 443
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSK 205
++D K G L+ A+++ + S+
Sbjct: 444 SHVINGLIDSYWKCGQLDYAIKVFKESR 471
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 8/241 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPD--QVTMATVLSACAHLGALD 58
MP RD+I W +I+ S + + E L F+ M+ G+ D + T+A+VL + A A+
Sbjct: 367 MPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAIC 426
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R++H +IG D ++ + L+D Y KCG LD ++ VF + R ++ +++ L+
Sbjct: 427 HTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALS 486
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+A+ +F +M+ + +EP+ S+L+ACT E+G++ + T +V
Sbjct: 487 QCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLI-KRQFTSDV 545
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVN 234
+V +K G +EDA ++ S + V W A++GG H R L++ H ++
Sbjct: 546 FAGNALVYAYAKCGSIEDA-DMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLD 604
Query: 235 E 235
E
Sbjct: 605 E 605
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 45/338 (13%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++++T YS N R+AL AF M+ G+ ++ + VL CA + G ++H
Sbjct: 69 VSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CA--PDVRFGAQVHAL 125
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL----REKNLFCWNSIIEGLAVHGF 122
+ DV++ +ALV +Y G +D + +F + E+N WN++I +
Sbjct: 126 AVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQ 185
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHY 181
+ +A+ +F M++ PN F V++ACT + +E GR+ ++ GY +V
Sbjct: 186 SGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYE--KDVFTA 243
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
+VD+ SK G +E A + + V W A + GC H + H A+ ++L+
Sbjct: 244 NALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTHGH---DHRALE--LLLQM 297
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+SG L+ N++ S + K C G+ + R+++ F K+
Sbjct: 298 KSSG---LVPNVFTLSS----------------VLKACAGAGAFNLGRQIHGFMV--KAV 336
Query: 302 PASDE--------IYSSLSKLDEQLKLASYVPELEAML 331
DE +Y+ LD+ K+ ++P + +L
Sbjct: 337 ADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I+SW+ MI +Q+ + ALD F+ M + G++P+ +T+ +VLSAC H G +D
Sbjct: 571 LPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDA 630
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGL 117
++ + M+ F ID + ++D+ + G L+ ++ LV + N W +++
Sbjct: 631 KK-YFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGAS 689
Query: 118 AVH 120
VH
Sbjct: 690 RVH 692
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ISW+ MI Y + ++EAL+ FN M+ I P + +++VL+ACA+LGALD G
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG 312
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV D +G+ALVDMYAKCG LD + VF K+ +K +F WN++I GL +H
Sbjct: 313 RWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMH 372
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M + PNG+T + VLSAC H+G+V+EG R F SM Y I P +EH
Sbjct: 373 GRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEH 432
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGLL +A E++ S +P+A +WGALLG C+ H ++E+ L+ LE
Sbjct: 433 YGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELE 492
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW +V +R MKE G+ K G S I+ + V++F D S
Sbjct: 493 PQNSGRYALLSNIYARAGRWDDVANVRKLMKERGV-KTSTGISMIDFDGVVHEFKMGDGS 551
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP IY L + ++LK+ + P +L
Sbjct: 552 HPQMKNIYLMLKNMIKRLKMEGFSPNTSQVL 582
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 27/270 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ + +I QN + +A+ + +M + P++ T T+ AC A + G
Sbjct: 90 VPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEG 149
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +V++ G DV+I SA + MY G ++ + + + ++ C+N++I+G
Sbjct: 150 VQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKC 209
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F M +NV V +S ++ C G++EE R F M I+
Sbjct: 210 GEVEAAKELFWSMEDKNVGSWNV-MVSGMAKC---GMIEEARELFNEMKEKNEIS----- 260
Query: 181 YGCMVDLLSKAGLLEDALE---LIRSSKFQPNAVIWGALLGGCKLHRNLEIA---HIAVN 234
+ M+D K G ++ALE +++ + +P + ++L C L+ H VN
Sbjct: 261 WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVN 320
Query: 235 ELMILEPNNSG-----YCTLLLNMYAEVSR 259
NNS T L++MYA+ R
Sbjct: 321 -------NNSNSFDAVLGTALVDMYAKCGR 343
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 64/222 (28%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAK--CGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+++H ++ G D Y+ LV YA +L+ +L VF + N+F +N II+G
Sbjct: 47 KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE------------------- 159
+ +A+ + +M+ + PN T+ ++ ACT A E
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166
Query: 160 ---------------EGRRRFL------------SMTCGYSITPEVE------------- 179
EG RR L +M GY EVE
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKN 226
Query: 180 --HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ MV ++K G++E+A EL K + N + W A++ G
Sbjct: 227 VGSWNVMVSGMAKCGMIEEARELFNEMK-EKNEISWSAMIDG 267
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + ++SW MI+ +QN F+EA++ F++M+ + P+ VT+ +VL A + LGA++LG
Sbjct: 216 MPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELG 275
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
+ +HL+ + +ID +GSAL+DMY+KCGS+D+++ VF +R +KN W++II GLA+
Sbjct: 276 KWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAM 335
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A +AL F RM V P+ V +I VLSAC+HAGLVEEGR + M + P +E
Sbjct: 336 HGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIE 395
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE+A +LI + +P+ VI ALLG CK+H N+E+ LM
Sbjct: 396 HYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGW 455
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P++SG L NM+A W V K+R+ MKEL I K PG SWIE++ +++F D
Sbjct: 456 YPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKD-PGCSWIELDGVIHEFLVEDD 514
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP ++ I+S L ++ ++L+ Y P +L
Sbjct: 515 SHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVL 546
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 58/274 (21%)
Query: 3 ARDIISWTTMITCYSQNKQFR----------------EALDAFNEMKNSG-ISPDQVTMA 45
AR S C+S N R EAL F+ M G + P++ T
Sbjct: 68 ARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFP 127
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-- 103
VL ACA L ++ G+++H +V+++G D ++ S LV +Y CG++ + ++F++ R
Sbjct: 128 CVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLE 187
Query: 104 ------------------------------EKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
K++ WN +I G A +G EA+ MF M
Sbjct: 188 GNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDM 247
Query: 134 IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE----HYGCMVDLLS 189
+V PN VT +SVL A + G +E G+ L ++ E+E ++D+ S
Sbjct: 248 QLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHL-----FAEKNEIEIDDVLGSALIDMYS 302
Query: 190 KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
K G ++ A+++ + + N + W A++GG +H
Sbjct: 303 KCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMH 336
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 207/324 (63%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW+ MI YSQN EAL F EM+ ++ + LS C+++ AL+LG
Sbjct: 140 MPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +++ G+ Y+G+AL+ MY KCGS+D + F ++ EK++ WN++I G A H
Sbjct: 200 RQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARH 259
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F+ M + P+ T +SVL+AC+HAGLV++G F SM Y IT ++ H
Sbjct: 260 GFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVH 319
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG LE+A L+++ F+P+A WGALLG ++H N E+ A + +E
Sbjct: 320 YTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEME 379
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL +YA RW++ K+R+ M+ G+ K+ PG SW+E++ K++ F D S
Sbjct: 380 PHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGV-KKVPGYSWLEVQNKIHTFKVGDTS 438
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP +D+IY+ L ++D +LK Y+
Sbjct: 439 HPHTDKIYTFLEEMDLKLKQEGYI 462
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 42/280 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW M+T Y +N+ + A F M I V+ +LS A G +D
Sbjct: 21 MPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI----VSWNAMLSGYAQNGFVDEA 76
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-----------------FKLR 103
REI Y M + I + L+ Y + G ++ + +F F +
Sbjct: 77 REI-FYKMPLKNGISW---NGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRK 132
Query: 104 EKNLF---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+NLF W+++I G + +G + EAL F M + N +F LS C++
Sbjct: 133 RRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSN 192
Query: 155 AGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+E GR+ + GY V + ++ + K G +++A + + + + V W
Sbjct: 193 IAALELGRQLHCRLVKAGYQTGWYVGN--ALLAMYCKCGSIDEARDAFQEI-LEKDVVSW 249
Query: 214 GALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
++ G H E A + V ELM + P+++ ++L
Sbjct: 250 NTMIHGYARHGFGEEA-LTVFELMKTTGIRPDDATMVSVL 288
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
++ Y + D + +F K+ E++LF WN ++ G + A A+F+RM ++
Sbjct: 1 MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI--- 57
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
V++ ++LS G V+E R F M I+ + ++ + G +EDA L
Sbjct: 58 -VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGIS-----WNGLLAAYVQNGRIEDAKRLF 111
Query: 202 RSSKFQPNAVIWGALLGG-CKLHRNL 226
SK V W L+GG + RNL
Sbjct: 112 -ESKMDWTLVSWNCLMGGFVRKRRNL 136
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 210/332 (63%), Gaps = 3/332 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+++WT M+T Y+QN +AL+ F+ M GI D+V++ +SACA LGA+
Sbjct: 239 PVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAA 298
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ GF ++V +GS LVDMYAKCG +D + VF ++EKN++ ++S++ GLA HG
Sbjct: 299 WVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHG 358
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A EA+A+F M+ +V PN VTFI VL+AC+HAG+V +GR F M Y I P +H
Sbjct: 359 RAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADH 418
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGL+++AL+L+RS +P+ +WGALLG C++H E+A +A L LE
Sbjct: 419 YTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLE 478
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE-MERKVYQFAASDK 299
P G LL N A +W EV+K+R M+ + K+ P SW E + V+QF A D
Sbjct: 479 PEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRL-KKVPAVSWFEGRDGLVHQFFAGDN 537
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP + EI +L +L +LK A YVP L +++
Sbjct: 538 SHPRTREIKKALLELVAKLKHAGYVPILSSIV 569
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 92/216 (42%), Gaps = 40/216 (18%)
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII---------------- 114
GFD ++ ++L+ Y CG + + VF ++ K++ CW SI+
Sbjct: 176 GFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVF 235
Query: 115 ---------------EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
G A + +AL +FDRM + + V+ +SAC G V+
Sbjct: 236 GQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVK 295
Query: 160 EGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
+ ++ G+ + V +VD+ +K GL+++A ++ + + N + +++
Sbjct: 296 RAAWVQEIAEMNGFGMNVVVG--SGLVDMYAKCGLIDEACKVFDGMQ-EKNVYTYSSMVV 352
Query: 219 GCKLHRNLEIAHIAVNELMI----LEPNNSGYCTLL 250
G H A IA+ + M+ + PN+ + +L
Sbjct: 353 GLASHGRAREA-IALFKDMVRRADVAPNHVTFIGVL 387
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 209/325 (64%), Gaps = 1/325 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W +I Y QN +EA+ +F++M+ P+ VT +VL A A+L A G H
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 302
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++Q+GF + +G++L+DMYAKCG LD S +F ++ K+ WN+++ G AVHG A
Sbjct: 303 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 362
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+A+F M V+ + V+F+SVLSAC HAGLVEEGR+ F SM+ Y I P++EHY CMVD
Sbjct: 363 IALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVD 422
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246
LL +AGL ++ L I+ +P+A +WGALLG C++H N+++ +A++ L+ LEP N +
Sbjct: 423 LLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAH 482
Query: 247 CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDE 306
+L ++YA+ RWA+ K R M +LG+ K+ PG SW+E++ KV+ F DKSHP +
Sbjct: 483 FVVLSSIYAQSGRWADAGKARSKMNDLGL-KKTPGCSWVELKNKVHAFRVGDKSHPQLES 541
Query: 307 IYSSLSKLDEQLKLASYVPELEAML 331
++ + L E+++ YVP+ +L
Sbjct: 542 MHLLWNTLLEKMEKIGYVPDRSCVL 566
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 121/306 (39%), Gaps = 118/306 (38%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P+R I W +MI Y+++KQ+ EAL+ + M G
Sbjct: 112 PSR--ILWNSMIRAYTRSKQYNEALEMYYCMVEKG------------------------- 144
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA--- 118
G + DV+IG+ LVDMY+K G L R+ VF K+ ++++ WN++I GL+
Sbjct: 145 ---------GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 195
Query: 119 -----------------------VHGFAH------------------------------- 124
+ G+AH
Sbjct: 196 DPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQN 255
Query: 125 ----EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMT-CG 171
EA++ F +M EN PN VTF+SVL A + EG + FLS T G
Sbjct: 256 GHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVG 315
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
S ++D+ +K G L+ + +L + + V W A+L G +H + + A I
Sbjct: 316 NS----------LIDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRA-I 363
Query: 232 AVNELM 237
A+ LM
Sbjct: 364 ALFSLM 369
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW M++ Y+ + A+ F+ M+ S + D V+ +VLSAC H G ++ G
Sbjct: 338 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEG 397
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEG 116
R+I + M + I D+ + +VD+ + G D + L F K+ E + W +++
Sbjct: 398 RKI-FHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET-LGFIKVMPVEPDAGVWGALLGS 455
Query: 117 LAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAG-LVEEGRRRFLSMTCGYSI 174
+H D ++ +EP N F+ + S +G + G+ R G
Sbjct: 456 CRMHSNVKLGEVALDHLV--KLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKK 513
Query: 175 TP 176
TP
Sbjct: 514 TP 515
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 214/327 (65%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W+TMI YSQN + E+L+ F MK + P++VT+ VLSACA LG+ +LG
Sbjct: 366 MPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELG 425
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I Y+ + Y+GSAL+DMY KCG + R+ VF ++ +K + WNS+I GLA++
Sbjct: 426 EQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALN 485
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A+A++ +M+ + ++PN VTF+++L+ACTHAGLV++G F M ++P+VEH
Sbjct: 486 GFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEH 545
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A +L+ LE
Sbjct: 546 CACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALE 605
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNNS LL N+YA+ W +V +IR M+ ++K SWIE++ +V++F D
Sbjct: 606 PNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQK-LSAYSWIELDGEVHRFLVQDTY 664
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIY+ + L QL+ S EL
Sbjct: 665 HPRSAEIYNVVDGLGLQLERTSPDHEL 691
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
VL +CA A G + H + + G DV++ +ALVD YAK G +D +L+ F ++ K+
Sbjct: 180 VLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKD 239
Query: 107 ----------------------LF---------CWNSIIEGLAVHGFAHEALAMFDRMIY 135
LF WNS+I A G EAL +FD+M+
Sbjct: 240 PIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLR 299
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRR 163
E PN +T +V S C G ++ GRR
Sbjct: 300 EGASPNAITITTVFSICAKTGDLDTGRR 327
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++WT MI Y++ E+L F++M+ G+ PD+V M TV+ ACA LGA+
Sbjct: 293 MPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 352
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ + F +DV +G+A++DM+AKCG ++ + +F ++ EKN+ W+++I H
Sbjct: 353 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 412
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ + PN +T +S+L AC+HAGLVEEG R F M YS+ +V+H
Sbjct: 413 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKH 472
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++AL+LI S + + +WGA LG C+ H+++ +A A L+ L+
Sbjct: 473 YTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 532
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G+ LL N+YA RW +V K R M + + K+ PG +WIE++ K +QF+ D +
Sbjct: 533 PQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRL-KKIPGWTWIEVDNKSHQFSVGDTT 591
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L L +L+L YVP+ +L
Sbjct: 592 HPRSKEIYEMLKSLGNKLELVGYVPDTNFVL 622
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 20/232 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ISW+ MI Y + Q R+ALD F M +SG+ PD++T+A++L AC+ L L +G
Sbjct: 192 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG 251
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V + G D+D ++ +ALVDMY KC ++ + +F K+ E++L W +I G A
Sbjct: 252 RLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAEC 311
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRF-LSMTCG 171
G A+E+L +FD+M E V P+ V ++V+ AC G + + R++F L + G
Sbjct: 312 GNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 371
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ M+D+ +K G +E A E+ + + N + W A++ H
Sbjct: 372 TA----------MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 412
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 6/221 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y++ + E+L F +M+ G+ PD+V M TV+ ACA LGA+
Sbjct: 91 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 150
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ + F +DV +G+A++DMYAKCG ++ + +F ++ EKN+ W+++I H
Sbjct: 151 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 210
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ + P+ +T S+L AC+ ++ GR L Y +++H
Sbjct: 211 GQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGR---LIHHIVYKFGLDLDH 267
Query: 181 YGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ C +VD+ K +EDA L + + V W ++GG
Sbjct: 268 FVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
M+ +++ + F E+ G PD T+ V+ AC L L +GR IH V + G
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
D+D ++ +ALVDMY KC ++ + +F K++E++L W +I G A G A+E+L +F+
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRF-LSMTCGYSITPEVEHYG 182
+M E V P+ V ++V+ AC G + + R++F L + G +
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA--------- 171
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
M+D+ +K G +E A E+ + + N + W A++ H
Sbjct: 172 -MIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 210
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/332 (42%), Positives = 210/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI++W ++I ++ N + EAL + M + G+ PD TM ++LSACA L L LG
Sbjct: 67 MPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
R H+Y++++G + +++ +AL+D+YAKCG++ + +F ++ E+N+ W S+I GLAV
Sbjct: 127 RRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAV 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+GF EAL F M E + P+ +TF+ VL AC+H G+V EG F M Y I P +E
Sbjct: 187 NGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIE 246
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL++A + I+ QPNAVIW LLG C +H +L + A L+ L
Sbjct: 247 HYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQL 306
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP +SG LL N+YA RW++V ++R M G+ K PG S +E+ V++F D+
Sbjct: 307 EPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRK-TPGYSLVELGNHVHEFVMGDR 365
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP S+ IY L ++ +LKLA YVP +L
Sbjct: 366 THPQSEAIYKMLVEMAMKLKLAGYVPHTANVL 397
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + EK++ WNS+I G A++G +EAL ++ RM E VEP+G T +S+LSAC
Sbjct: 63 VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELAT 122
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ GRR + M + + ++DL +K G + +A ++ + N V W +L+
Sbjct: 123 LVLGRRAHVYMV-KVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLI 181
Query: 218 GG 219
G
Sbjct: 182 VG 183
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 209/318 (65%), Gaps = 1/318 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
ARDI+SWT MI+ Q K+ EAL+ FN M+ SG+ PD+V ++TVLSACA LGAL+ GR
Sbjct: 279 ARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRW 338
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y+ + G + DV++G+++VDMY KCG LD ++ +F ++ KN+ WN++I G A+HG
Sbjct: 339 VHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGR 398
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL FDRM+ + PN VTFI+VL AC H+GLV+EGR+ F MT Y ++P +HYG
Sbjct: 399 GREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYG 458
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AGL+++A ++I++ +P W LL C+ H ++ + + + LE +
Sbjct: 459 CMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESS 518
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+G LL NMYA RWA+V K R M E G++K PGSS IE+ K +F ++H
Sbjct: 519 GNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKE-PGSSVIEVNGKTCEFLVGQQNHL 577
Query: 303 ASDEIYSSLSKLDEQLKL 320
D++ + LS L +Q+ L
Sbjct: 578 YMDDVRAMLSILMKQIHL 595
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 132/254 (51%), Gaps = 11/254 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT +++ +++ F EAL EM ++P++VT+A+VL AC +LG G
Sbjct: 179 MAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACGNLGTARAG 235
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + ++++ +G+AL+DMY KC LD + VF L +++ W +I GL
Sbjct: 236 KAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQC 295
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
EAL +F+ M V+P+ V +VLSAC G +E GR ++ I +V
Sbjct: 296 KRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERK---GIEWDV 352
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+VD+ K G L+ A+ + + + N W AL+ G LH A + ++
Sbjct: 353 HVGTSVVDMYVKCGCLDTAVSIFQEMPLK-NVSSWNALINGFALHGRGREALDCFDRMVA 411
Query: 239 --LEPNNSGYCTLL 250
L PN + T+L
Sbjct: 412 SGLHPNEVTFITVL 425
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 34 NSGISPDQVTMATVLSACAHLGA-LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
+G PD T+ L ACA LG L G + H + GF V + +ALV Y CG
Sbjct: 110 GAGARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQC 169
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ VF ++ E+++ W +++ G EAL + M +V PN VT SVL AC
Sbjct: 170 GDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVLVAC 226
Query: 153 THAGLVEEGR 162
+ G G+
Sbjct: 227 GNLGTARAGK 236
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++ SW +I ++ + + REALD F+ M SG+ P++VT TVL AC H G + G
Sbjct: 378 MPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEG 437
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIE 115
R++ +M + + D Y +VD+ + G + + V + + +F W +++
Sbjct: 438 RQL-FELMTKSYKLSPWEDHY--GCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLS 494
Query: 116 GLAVHG 121
HG
Sbjct: 495 ACQAHG 500
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 214/326 (65%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++W MIT Y+QN +EA+ F+ M+ G SPD++T+ VLSACA +GAL+LG E+
Sbjct: 282 KDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTEL 341
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y G +VY+G+ALVDMY+KCG LD+++ VF KL KN WN++I GLA +G
Sbjct: 342 DAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRG 401
Query: 124 HEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
HEA+ F+ M E + P+ +TFI VLSAC HAGL+++GRR F S+T + I P++EHY
Sbjct: 402 HEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYS 461
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL++AG LE+A + + + +AV+ GALL C+ +N+E++ +N +M LEP+
Sbjct: 462 CMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLEPS 521
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + K+R M+E G+ K PG SW+E+ KV +F A D+S
Sbjct: 522 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSK-IPGCSWVEVSGKVLEFYAGDESQH 580
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
+D++Y L ++++L YVP L+
Sbjct: 581 GADDMYQLHDMLIDEMRLEGYVPNLD 606
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P RD++SW M+ Y + + F +M + G ++P++VT+A VL+AC G L L
Sbjct: 177 IPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVL 236
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + +V ++ +GSALV MY KCG + + VF + K++ WN++I G A
Sbjct: 237 GRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQ 296
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G + EA+A+F M E P+ +T + VLSAC G +E G + + V
Sbjct: 297 NGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELG-TELDAYASHRGLYGNVY 355
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ SK G L+ A+++ + N W AL+ G
Sbjct: 356 VGTALVDMYSKCGDLDKAVQVFGKLPCK-NEATWNALICG 394
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
PA S+ + ++ + R AL F M + + PD T+ +L A A R
Sbjct: 78 PAPTAFSYNVTLRFFASTRP-RTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFAR 136
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H + ++G + +LV MY+ G + VF + +++ WN++++ G
Sbjct: 137 SAHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAG 196
Query: 122 FAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR 162
A + MF MI E V PN VT VL+AC AG + GR
Sbjct: 197 MAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGR 238
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P ++ +W +I + N + EA+ F M+N G+ PD +T VLSAC H G L
Sbjct: 380 LPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKD 439
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRS 95
GR + QI I+ Y S +VD+ A+ G L+ +
Sbjct: 440 GRRWFNSLTSEFQIIPKIEHY--SCMVDLLARAGHLEEA 476
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 216/326 (66%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D ++W +IT Y+QN +EA+ F+ M+ +G PD++T+ VLSACA +GAL+LG E+
Sbjct: 297 KDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTEL 356
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y +Q GF +VY+G+ALVDMY+KCG L R++ VF KL KN WN++I GLA +G
Sbjct: 357 DRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRG 416
Query: 124 HEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+ F+ M E + P+ +TFI VLSAC HAGL+++GRR F S+T + I P++EHY
Sbjct: 417 QEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYS 476
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL++AG LE+A + I +P+AV+ GALL C+ +N+E++ +N++M+LEP+
Sbjct: 477 CMVDLLARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLEPS 536
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + ++R M+E G+ K PG SWIE+ +V +F A D+
Sbjct: 537 NSWNYVVSSKIYASSDRLDDSARMRGLMRERGVSK-IPGCSWIEVSGRVLEFYAGDEPQH 595
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
+++Y L L ++++L YVP L+
Sbjct: 596 GVEDMYQLLDTLVDEMRLEGYVPNLD 621
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGRE 62
RD++SW +MI Y +A F M G + P+ VT+A VL+AC G L LGR
Sbjct: 195 RDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRW 254
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+ +V +G ++ +GSALV MY KCG + + VF + K+ WN++I G A +G
Sbjct: 255 LEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGM 314
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEH 180
+ EA+++F M P+ +T + VLSAC G +E G R+ YS V
Sbjct: 315 SKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYS---NVYV 371
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ SK G L A+++ + N W AL+ G
Sbjct: 372 GTALVDMYSKCGDLTRAIQVFEKLPCK-NEASWNALICG 409
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ SW +I + N + +EA+ F M K G+ PD +T VLSAC H G L
Sbjct: 395 LPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKD 454
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRS 95
GR + QI I+ Y S +VD+ A+ G L+ +
Sbjct: 455 GRRWFDSLTSEFQIIPKIEHY--SCMVDLLARAGHLEEA 491
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 14/224 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P S+ + ++ ++ R L M + + PD T+ +L A A A
Sbjct: 93 PTPTAFSFNVALRFFAASRP-RTTLQLSLRMLRAALRPDAYTLPFLLLAAARCPAPAFAA 151
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H + ++G + +LV MY+ G + VF + +++ WNS+I+ G
Sbjct: 152 SAHALLQKLGLHNHDHTVHSLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAG 211
Query: 122 FAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR-----RRFLSMTCGYSIT 175
+A MF M+ E V PN VT VL+AC AG + GR + + M G +
Sbjct: 212 MKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRWLEEWVKSVGMEVGSLVG 271
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + K G + +A + + + N V W AL+ G
Sbjct: 272 ------SALVGMYEKCGEMAEARRVFDAIAHKDN-VAWNALITG 308
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+ T+MIT SQ A+ F EM G+ PD ++++L+ACA L A + G+++H
Sbjct: 469 DIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F D + G+ALV YAKCGS++ + L F L E+ + W+++I GLA HG
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E + PN +T SVL AC HAGLV+E +R F SM + I EHY CM
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG L+DA+EL+ S FQ NA IWGALLG ++H++ E+ +A +L ILEP S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W EV K+R MK+ I+K P SWIE++ KV+ F DKSHP +
Sbjct: 709 GTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE-PAMSWIEVKDKVHTFIVGDKSHPMT 767
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
EIY+ L +L + + A +VP ++ L
Sbjct: 768 KEIYAKLVELGDLMSKAGFVPNVDVDL 794
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 124/217 (57%), Gaps = 2/217 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW +++ Y +N Q +A+ F EM SGI P + + V++AC ++ GR++
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++G+D DV+ +ALVDMY K G +D + ++F K+ + ++ WN++I G ++G
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
H A+ + +M Y + PN T S+L AC+ AG + GR+ M + + + G
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG- 343
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+VD+ +K L+DA ++ F + ++ AL+ GC
Sbjct: 344 LVDMYAKNHFLDDARKVF-DWMFHRDLILCNALISGC 379
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 30/289 (10%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++++T YS N R A+ AF+ M+ G+ ++ + VL + LG ++H
Sbjct: 69 VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAM 125
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHE 125
M GF DV++ +ALV MY G +D + VF + E+N WN ++ + +
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGD 185
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ +F M++ ++P F V++ACT + +E G R+ +M +V +V
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAG-RQVHAMVVRMGYDKDVFTANALV 244
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245
D+ K G + D +I + V W AL+ GC L+ + H A+ L+ ++
Sbjct: 245 DMYMKMGRV-DIASVIFEKMPDSDVVSWNALISGCVLNGH---DHRAIELLLQMK----- 295
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
Y L+ N++ S I K C G+ ++ R+++ F
Sbjct: 296 YSGLVPNVFTLSS----------------ILKACSGAGAFDLGRQIHGF 328
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +I+ N A++ +MK SG+ P+ T++++L AC+ GA DLG
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++++ D D YIG LVDMYAK LD + VF + ++L N++I G +
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
G EAL++F + E + N T +VL +
Sbjct: 383 GRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 24/255 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I +I+ S + EAL F E++ G+ ++ T+A VL + A L A
Sbjct: 364 MFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTT 423
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++IGF D ++ + L+D Y KC L + VF + ++ S+I L+
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQC 483
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
A+ +F M+ + +EP+ S+L+AC E+G +R+F+S
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS----- 538
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEI 228
+ +V +K G +EDA EL SS + V W A++GG H R LE+
Sbjct: 539 ----DAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593
Query: 229 AHIAVNELMILEPNN 243
V+E + PN+
Sbjct: 594 FGRMVDEG--INPNH 606
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R ++SW+ MI +Q+ + AL+ F M + GI+P+ +TM +VL AC H G +D
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGL 117
+ + M+ F ID S ++D+ + G LD ++ LV + N W +++
Sbjct: 626 KR-YFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684
Query: 118 AVH 120
VH
Sbjct: 685 RVH 687
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+ T+MIT SQ A+ F EM G+ PD ++++L+ACA L A + G+++H
Sbjct: 469 DIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F D + G+ALV YAKCGS++ + L F L E+ + W+++I GLA HG
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E + PN +T SVL AC HAGLV+E +R F SM + I EHY CM
Sbjct: 589 RALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCM 648
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG L+DA+EL+ S FQ NA IWGALLG ++H++ E+ +A +L ILEP S
Sbjct: 649 IDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKS 708
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W EV K+R MK+ I+K P SWIE++ KV+ F DKSHP +
Sbjct: 709 GTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE-PAMSWIEVKDKVHTFIVGDKSHPMT 767
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
EIY+ L +L + + A +VP ++ L
Sbjct: 768 KEIYAKLVELGDLMSKAGFVPNVDVDL 794
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 124/217 (57%), Gaps = 2/217 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW +++ Y +N Q +A+ F EM SGI P + + V++AC ++ GR++
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++G+D DV+ +ALVDMY K G +D + ++F K+ + ++ WN++I G ++G
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
H A+ + +M Y + PN T S+L AC+ AG + GR+ M + + + G
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG- 343
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+VD+ +K L+DA ++ F + ++ AL+ GC
Sbjct: 344 LVDMYAKNHFLDDARKVF-DWMFHRDLILCNALISGC 379
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 30/289 (10%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++++T YS N R A+ AF+ M+ G+ ++ + VL + LG ++H
Sbjct: 69 VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAM 125
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHE 125
M GF DV++ +ALV MY G +D + VF + E+N WN ++ + +
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGD 185
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ +F M++ ++P F V++ACT + +E G R+ +M +V +V
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAG-RQVHAMVVRMGYDKDVFTANALV 244
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245
D+ K G + D +I + V W AL+ GC L+ + H A+ L+ ++
Sbjct: 245 DMYMKMGRV-DIASVIFEKMPDSDVVSWNALISGCVLNGH---DHRAIELLLQMK----- 295
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
Y L+ N++ S I K C G+ ++ R+++ F
Sbjct: 296 YSGLVPNVFTLSS----------------ILKACSGAGAFDLGRQIHGF 328
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +I+ N A++ +MK SG+ P+ T++++L AC+ GA DLG
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++++ D D YIG LVDMYAK LD + VF + ++L N++I G +
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
G EAL++F + E + N T +VL +
Sbjct: 383 GRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 24/255 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I +I+ S + EAL F E++ G+ ++ T+A VL + A L A
Sbjct: 364 MFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTT 423
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++IGF D ++ + L+D Y KC L + VF + ++ S+I L+
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQC 483
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
A+ +F M+ + +EP+ S+L+AC E+G +R+F+S
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS----- 538
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEI 228
+ +V +K G +EDA EL SS + V W A++GG H R LE+
Sbjct: 539 ----DAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593
Query: 229 AHIAVNELMILEPNN 243
V+E + PN+
Sbjct: 594 FGRMVDEG--INPNH 606
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R ++SW+ MI +Q+ + AL+ F M + GI+P+ +TM +VL AC H G +D
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGL 117
+ + M+ F ID S ++D+ + G LD ++ LV + N W +++
Sbjct: 626 KR-YFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684
Query: 118 AVH 120
VH
Sbjct: 685 RVH 687
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 206/328 (62%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW +I+ +S KQ EA F++M G+ PD T AT+L CA+L ++LG++I
Sbjct: 478 QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQI 537
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ D YI S LVDMY+KCG++ L+F K ++ WN+++ G A HG
Sbjct: 538 HAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLG 597
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F+ M ENV+PN TF++VL AC H GLVE+G F SM Y + P++EHY C
Sbjct: 598 EEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSC 657
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VD++ ++G + ALELI F+ +AVIW LL CK+H N+E+A A ++ LEP +
Sbjct: 658 VVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPED 717
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S LL N+YA W EVTK+R M+ G++K PG SWIE++ +V+ F DK+HP
Sbjct: 718 SAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKE-PGCSWIEIKSEVHAFLVGDKAHPR 776
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S EIY +L L +++K Y+P+ + +L
Sbjct: 777 SKEIYENLDVLTDEMKWVGYMPDTDFIL 804
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 134/253 (52%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SW +I + QN + L F M SG+ PD+ T +VL ACA AL+ G
Sbjct: 374 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG 433
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH +++ +D ++G AL+DMY+KCG ++++ + +L E+ + WN+II G ++
Sbjct: 434 MEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 493
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ EA F +M+ V+P+ T+ ++L C + VE G ++ + + +
Sbjct: 494 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG-KQIHAQIIKKELQSDAYI 552
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+VD+ SK G ++D +LI + V W A++ G H E A + + E M LE
Sbjct: 553 SSTLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA-LKIFEYMQLE 610
Query: 241 ---PNNSGYCTLL 250
PN++ + +L
Sbjct: 611 NVKPNHATFLAVL 623
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 133/261 (50%), Gaps = 22/261 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ S+ +I Y+++ + EAL F ++ SG+ D+V+++ ACA + G
Sbjct: 273 LPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEG 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H M+ ++ + +A++DMY KCG+L + LVF ++ ++ WN+II +
Sbjct: 333 LQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQN 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
G + L++F M+ +EP+ T+ SVL AC AG + ++ CG I +
Sbjct: 393 GNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC--AG--------WQALNCGMEIHNRIIK 442
Query: 179 EHYG-------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
G ++D+ SK G++E A E + + V W A++ G L + E A
Sbjct: 443 SRMGLDSFVGIALIDMYSKCGMMEKA-EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQK 501
Query: 232 AVNEL--MILEPNNSGYCTLL 250
+++ M ++P+N Y T+L
Sbjct: 502 TFSKMLEMGVDPDNFTYATIL 522
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 106/240 (44%), Gaps = 32/240 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP---------------DQVTMA 45
MP RD +SW M+ Y+ A F+ M +G D+ T A
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFA 162
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD---RSLLVFFKL 102
VL +C+ L G +IH +++GFD DV GSAL+DMYAKC + R L FK
Sbjct: 163 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKE 222
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA---GLVE 159
+K + + L +HG A + D +I + + LS C++ L
Sbjct: 223 MQK------AGVGALQLHGHALKTDFGTDVVI-GTATLDMYMKCNNLSDCSNQLFNSLPN 275
Query: 160 EGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
+ + ++ GY+ + + +E G M LL K+GL D + L S + AVI G L G
Sbjct: 276 HNLQSYNAIIVGYARSDKGIEALG-MFRLLQKSGLGLDEVSL--SGAXRACAVIKGDLEG 332
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG- 60
P RD ++W M+ Y+Q+ EAL F M+ + P+ T VL AC H+G ++ G
Sbjct: 577 PNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 636
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGLAV 119
H + G D + S +VD+ + G + ++L L+ E + W +++ +
Sbjct: 637 HYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKI 696
Query: 120 HG 121
HG
Sbjct: 697 HG 698
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T + + C+ AL G++ H ++ F V++ + L+ MY KC L + VF +
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
+++ WN+++ G A G A +FD M
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 216/325 (66%), Gaps = 2/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++W+TMI+ Y++N F +A++ F ++ G+ ++ M V+S+CAHLGAL +G
Sbjct: 209 MPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H YVM+ +++ +G+A+VDMYA+CG+++++++VF +L EK++ CW ++I GLA+H
Sbjct: 269 EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMH 328
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +AL F M + P +TF +VL+AC+HAG+VE G F SM + + P +EH
Sbjct: 329 GYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEH 388
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L A + + +PNA IW ALLG C++H+N+E+ L+ ++
Sbjct: 389 YGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQ 448
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SG+ LL N+YA ++W +VT +R MK+ G+ K PG S IE++ KV++F DK+
Sbjct: 449 PEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKP-PGYSLIEIDGKVHEFTIGDKT 507
Query: 301 HPASDEIYSSLSKLD-EQLKLASYV 324
HP ++I + ++KLA YV
Sbjct: 508 HPEIEKIERIWEDIILPKIKLAGYV 532
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 51/234 (21%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA-------- 87
G+ PD +T ++ ACA L +G + H ++ GF+ D Y+ ++LV MYA
Sbjct: 112 GLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAA 171
Query: 88 -----------------------KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+CG + +F ++ E+NL W+++I G A +
Sbjct: 172 RSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFE 231
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF---------LSMTCGYSIT 175
+A+ F+ + E V N + V+S+C H G + G + L++ G ++
Sbjct: 232 KAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAV- 290
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
VD+ ++ G +E A+ ++ + + + W AL+ G +H E A
Sbjct: 291 ---------VDMYARCGNVEKAV-MVFEQLPEKDVLCWTALIAGLAMHGYAEKA 334
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 207/335 (61%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALD 58
M R+I+SWT MI+ Y+QN +AL F+EM G + P+ VT+ +VL ACA AL+
Sbjct: 199 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEG 116
GR IH + IG ++ + +AL MYAKC SL + F + + KNL WN++I
Sbjct: 259 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 318
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A HG EA+++F+ M+ V+P+ VTF+ +LS C+H+GL++ G F M +S+ P
Sbjct: 319 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 378
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
VEHY C+VDLL +AG L +A ELI Q +WGALL C+ HRNLEIA +A L
Sbjct: 379 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 438
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+LEP+NSG LL N+YAE W EV K+R +K G+ K+ PG SWIE+ K + F
Sbjct: 439 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGM-KKSPGCSWIEINGKSHLFMG 497
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+DKSHP + EIY L L E++K+A Y+P+ +L
Sbjct: 498 ADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVL 532
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 33/171 (19%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
L+A+ M G+ D T+ VL +CA L + +GR +H +++G + D Y+G++L+DM
Sbjct: 92 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151
Query: 86 YAKCGSLD--RSLL-----------------------------VFFKLREKNLFCWNSII 114
Y KCG + R L +F ++ +N+ W ++I
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211
Query: 115 EGLAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGRR 163
G +GFA +AL +FD M+ + E PN VT +SVL AC + +E GRR
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRR 262
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 207/326 (63%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI+SW+ +I+ Y+Q+ F E L F+EM+ I PD+ + +V+SAC HL ALD G
Sbjct: 396 MPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG 455
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + G ++V +G+ L+DMY KCG ++ +L VF + EK + WN++I GLAV+
Sbjct: 456 KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVN 515
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +L MF M V PN +TF+ VL AC H GLV+EGR F SM + I P V+H
Sbjct: 516 GLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKH 575
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL +A +LI S P+ WGALLG CK H + E+ +L+ L+
Sbjct: 576 YGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQ 635
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G+ LL N++A W +V ++R MK+ G+ K PG S IE V++F A DK+
Sbjct: 636 PDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK-TPGCSLIEANGVVHEFLAGDKT 694
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP +++ L+++ ++LK+ Y P+
Sbjct: 695 HPWINKVEGMLNEMAKRLKMEGYAPD 720
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 47/257 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW+ +I+ Y QN + EAL F EM +G+ D+V + +VLSACAHL + G
Sbjct: 264 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KC 89
+ IH V+++G + V + +AL+ MY+ KC
Sbjct: 324 KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKC 383
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
GS++++ +F + EK++ W+++I G A H E LA+F M + P+ +SV+
Sbjct: 384 GSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVI 443
Query: 150 SACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
SACTH +++G R+ L + T ++D+ K G +E+ALE+
Sbjct: 444 SACTHLAALDQGKWVHAYIRKNGLKVNVILGTT--------LLDMYMKCGCVENALEVFN 495
Query: 203 SSKFQPNAVIWGALLGG 219
+ + W AL+ G
Sbjct: 496 GME-EKGVSSWNALIIG 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 118/279 (42%), Gaps = 74/279 (26%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG-REIHLYV 67
W TM+ Y Q+ +AL + M + + PD T V+ ACA + L+ G +EIH +V
Sbjct: 109 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHV 167
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+++GFD DVY+ + L++MYA CG++ + +F + + WNSI+ G G EA
Sbjct: 168 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAK 227
Query: 128 AMFDRMIYENV-----------------------------------------EPNG---- 142
+FD+M N+ E NG
Sbjct: 228 LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEE 287
Query: 143 --VTFI---------------SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY---- 181
V FI SVLSAC H +V+ G+ M G I +E Y
Sbjct: 288 ALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGK-----MIHGLVIRMGIESYVNLQ 342
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
++ + S +G + DA +L S + + W +++ GC
Sbjct: 343 NALIHMYSGSGEIMDAQKLFNGSH-NLDQISWNSMISGC 380
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 216/330 (65%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG SP++VTM ++L ACAHLGA+D+GR I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G + ++L+DMYAKCG ++ + VF + ++L WN++I G A+HG
Sbjct: 359 HVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A+ A +F RM + +EP+ +TF+ +LSAC+H+G+++ GR F SMT Y ITP++EHY
Sbjct: 419 RANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHY 478
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL +GL ++A E+I S + P+ VIW +LL CK+H N+E+ L+ +EP
Sbjct: 479 GCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEP 538
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
NSG LL N+YA RW EV K R + + G+ K+ PG S IE++ V++F DK H
Sbjct: 539 KNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGDKLH 597
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 598 PRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 128/230 (55%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW +I+ Y++ ++EAL+ F EM + + PD+ TM TVLSACA +++LG
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y KCG ++ + +F L K++ WN++I G
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHM 314
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR +R ++ S
Sbjct: 315 NLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 374
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ S + W A++ G +H
Sbjct: 375 LRTS------LIDMYAKCGDIEAAQQVF-DSMLNRSLSSWNAMIFGFAMH 417
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 51/317 (16%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T +L ACA A G++IH
Sbjct: 67 NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIH 126
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
+V+++G D+D+Y+ ++L+ MY K G + + VF +
Sbjct: 127 GHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIX 186
Query: 102 --------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ K++ WN++I G A G EAL +F M+ NV+P+ T ++VLSAC
Sbjct: 187 SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACA 246
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ +E G R+ S + ++ ++DL K G +E A L ++ + + W
Sbjct: 247 QSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DVISW 304
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEVTKI 266
L+GG H NL + + + M+ + T+L + A ++ RW V
Sbjct: 305 NTLIGGYT-HMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY-- 361
Query: 267 RVAMKELGIEKRCPGSS 283
I+KR G S
Sbjct: 362 --------IDKRLKGVS 370
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 27/265 (10%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD---RSLLVFFKL 102
++L C L +L R IH +++ G Y S L++ D ++ VF +
Sbjct: 7 SLLHNCKTLQSL---RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+E NL WN++ G A+ AL ++ MI + PN TF +L AC + EG+
Sbjct: 64 QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123
Query: 163 R---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ L + C + ++ + K G EDA ++ S + + V + AL+ G
Sbjct: 124 QIHGHVLKLGCDLDLYVHTS----LIAMYVKNGRXEDARKVFDQSSHR-DVVSYTALIKG 178
Query: 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE--- 276
+ + A +E+ + + + L++ YAE + E ++ M + ++
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVS---WNALISGYAETGNYKEALELFKEMMKTNVKPDE 235
Query: 277 -------KRCPGSSWIEMERKVYQF 294
C S+ IE+ R+V+ +
Sbjct: 236 STMVTVLSACAQSASIELGRQVHSW 260
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ + ++SW +I+ +S KQ EA F++M G+ PD T AT+L CA+L ++LG
Sbjct: 491 LAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 550
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ D YI S LVDMY+KCG++ L+F K ++ WN+++ G A H
Sbjct: 551 KQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQH 610
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F+ M ENV+PN TF++VL AC H GLVE+G F SM Y + P++EH
Sbjct: 611 GLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEH 670
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VD++ ++G + ALELI F+ +AVIW LL CK+H N+E+A A ++ LE
Sbjct: 671 YSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLE 730
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +S LL N+YA W EVTK+R M+ G++K PG SWIE++ +V+ F DK+
Sbjct: 731 PEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKE-PGCSWIEIKSEVHAFLVGDKA 789
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY +L L +++K Y+P+ + +L
Sbjct: 790 HPRSKEIYENLDVLTDEMKWVGYMPDTDFIL 820
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW ++I+ Y N R+ +D F +M G D+ T A VL +C+ L G
Sbjct: 134 MPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGG 193
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH +++GFD DV GSAL+DMYAKC LD S+ F + EKN W++II G +
Sbjct: 194 IQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQN 253
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
L +F M V + TF SV +C AGL
Sbjct: 254 DDLRGGLELFKEMQKAGVGVSQSTFASVFRSC--AGL 288
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 138/305 (45%), Gaps = 56/305 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW+ +I QN R L+ F EM+ +G+ Q T A+V +CA L AL LG
Sbjct: 235 MPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLG 294
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII------ 114
++H + ++ F DV IG+A +DMY KC +L + +F L NL +N+II
Sbjct: 295 SQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARS 354
Query: 115 -------------------------EGLAVHGFAHEAL---------AMFDR-------- 132
EGL VHG + ++L A+ D
Sbjct: 355 DKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALV 414
Query: 133 ---MIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDL 187
+++E V + V++ ++++A G E+ F+ S G ++D+
Sbjct: 415 EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDM 474
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSG 245
SK G++E A E + + V W A++ G L + E A +++ M ++P+N
Sbjct: 475 YSKCGMMEKA-EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 533
Query: 246 YCTLL 250
Y T+L
Sbjct: 534 YATIL 538
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 39/253 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SW +I + QN + L F
Sbjct: 423 MVSRDAVSWNAIIAAHEQNGNEEKTLSLF------------------------------- 451
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH +++ +D ++G AL+DMY+KCG ++++ + +L E+ + WN+II G ++
Sbjct: 452 --IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 509
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ EA F +M+ V+P+ T+ ++L C + VE G ++ + + +
Sbjct: 510 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG-KQIHAQIIKKELQSDAYI 568
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+VD+ SK G ++D +LI + V W A++ G H E A + + E M LE
Sbjct: 569 SSTLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA-LKIFEYMQLE 626
Query: 241 ---PNNSGYCTLL 250
PN++ + +L
Sbjct: 627 NVKPNHATFLAVL 639
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 41/219 (18%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T + + C+ AL G++ H ++ F V++ + L+ MY KC L+ + VF +
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP----------NG---------- 142
+++ WN+++ G A G A +FD M +V NG
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163
Query: 143 -----------VTFISVLSACT----HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
TF VL +C+ H G ++ L++ G+ +V ++D+
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ---IHGLAVKMGFDC--DVVTGSALLDM 218
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+K L+ +++ S + N V W A++ GC + +L
Sbjct: 219 YAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCVQNDDL 256
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 203/324 (62%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W+ MI Y QN+ EAL F EM G+ P+ ++ ++L+ CA L LD G
Sbjct: 293 MRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H +++ FD+DV+ SAL+ MY KCG+LD++ VF K++ WNS+I G A H
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M + P+G+T+I L+AC++ G V+EGR F SMT SI P EH
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL ++GL+E+A +LI++ +P+AVIWGAL+G C++HRN EIA +A +L+ LE
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELE 532
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK- 299
P N+G LL ++Y V RW + +K+R + + K PG SWIE +++V+ F + D
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNK-SPGCSWIEYDKRVHLFTSGDVL 591
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
+HP I L KLD L + Y
Sbjct: 592 AHPEHAAILRILEKLDGLLMESGY 615
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 119/252 (47%), Gaps = 37/252 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++WT M++ Y Q + EA F+EM + V+ ++S A G ++L
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLA 224
Query: 61 R----------EIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLD 93
R E+ M +G+ + V +A++ + + G +D
Sbjct: 225 RKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVD 284
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF K+RE++ W+++I+ + F EAL+ F M++ V PN + IS+L+ C
Sbjct: 285 AAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCA 344
Query: 154 HAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP-NAV 211
+++ GR +M C + + +V ++ + K G L+ A + + F+P + V
Sbjct: 345 ALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIV 400
Query: 212 IWGALLGGCKLH 223
+W +++ G H
Sbjct: 401 MWNSMITGYAQH 412
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 21/221 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL-DL 59
MP+RD+ S+ +I+ S +Q DA + + P V+ ++L G L D
Sbjct: 74 MPSRDLASYNALISGLSLRRQ--TLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADA 131
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + V +G L G ++ + +F ++ ++++ W +++ G
Sbjct: 132 IRLFQQMPERNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQ 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EA A+FD M NV V++ +++S G V R+ F + PE
Sbjct: 187 AGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLF-------EVMPERN 235
Query: 180 HYGCMVDLLS--KAGLLEDALELIRSSKFQPNAVIWGALLG 218
L+ +AG +EDA EL + P A ++G
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 210/331 (63%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW MI+ Y+Q+ Q EAL F +MK G ++ +A LS+CA + AL+LG
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ GF G+AL+ MY KCGS++ + VF + EK++ WN++I G A H
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARH 484
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EALA+F+ M ++P+ VT + VLSAC+H G V++G F SM Y IT +H
Sbjct: 485 GFGKEALALFESMKM-TIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKH 543
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++AL L++S F P+A WGALLG ++H + E+ A ++ +E
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME 603
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YA RW EV ++R M++ G+ K+ PG SW+E++ K + F D S
Sbjct: 604 PDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV-KKVPGYSWVEIQNKTHIFTVGDCS 662
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++ IY+ L +LD +LK +V + +L
Sbjct: 663 HPEAERIYAYLEELDLELKKDGFVSSTKLVL 693
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ W I+ Y + Q AL FN M+ VT ++S D R+
Sbjct: 59 DIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCARK-- 112
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V + D D+ + ++ Y K G+L + +F ++ EK++ WN+++ G A +GF
Sbjct: 113 --VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA +FD+M+ +N +++ +LSA G +E+ RR F S + E+ + C+
Sbjct: 171 EARKIFDQMLVKNE----ISWNGLLSAYVQNGRIEDARRLFDS-----KMDWEIVSWNCL 221
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + L+DA L + + + W ++ G
Sbjct: 222 MGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITG 255
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+ +WT M++ + QN EA F EM ++V+ +++ ++
Sbjct: 272 LPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKA 327
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE L+ + + + +V YA+CG++D++ ++F ++ +++ W ++I G A
Sbjct: 328 RE--LFDQMPSRNTSSW--NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +F +M + N LS+C +E G++ + T +
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG 443
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G +E+A ++ + + V W ++ G H
Sbjct: 444 -NALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARH 484
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 24/252 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW M++ Y +N A FN+M D V+ +LS A G ++
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGFVEEA 172
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+I M + +I + L+ Y + G ++ + +F + + WN ++ G
Sbjct: 173 RKI-FDQMLVKNEISW---NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A ++FDRM + +++ +++ GL+ E RR F + +V
Sbjct: 229 KRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRDVFA 279
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ MV + G+L++A + + N V W A++ G + +E A EL
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKAR----ELFDQM 334
Query: 241 P--NNSGYCTLL 250
P N S + T++
Sbjct: 335 PSRNTSSWNTMV 346
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 213/330 (64%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW +I Y+ ++EAL F EM SG SP+ VTM ++L ACAHLGA+D+GR I
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G + ++L+DMY+KCG ++ + VF + K+L WN++I G A+HG
Sbjct: 319 HVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHG 378
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A+ A +F RM ++P+ +TF+ +LSAC+HAG+++ GR F SMT Y ITP++EHY
Sbjct: 379 RANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY 438
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL +GL ++A E+I + +P+ VIW +LL CK+H N+E+ L +EP
Sbjct: 439 GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEP 498
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
NN G LL N+YA RW EV +IR + + G+ K+ PG S IE++ V++F DK H
Sbjct: 499 NNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGM-KKVPGCSSIEIDSVVHEFIIGDKFH 557
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 558 PRNREIYGMLEEMEVLLQEAGFVPDTSEVL 587
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y + ++EAL+ F EM + + PD+ TM TV+SA A G+++LG
Sbjct: 155 IPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELG 214
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D Y+KCG ++ + +F L K++ WN +I G
Sbjct: 215 RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHL 274
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR +R +T S
Sbjct: 275 NLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASS 334
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ SK G +E A ++ +S + W A++ G +H
Sbjct: 335 LRTS------LIDMYSKCGDIEAAHQVF-NSMLHKSLPAWNAMIFGFAMH 377
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T +L +CA L A G +IH
Sbjct: 27 NLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIH 86
Query: 65 LYVMQIGFDIDVYIGSALVDMY-------------------------------AKCGSLD 93
+V+++G+++D+Y+ ++L+ MY A G ++
Sbjct: 87 GHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIE 146
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ K++ WN++I G G EAL +F M+ NV P+ T ++V+SA
Sbjct: 147 SARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASA 206
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E G R+ S + ++ ++D SK G +E A L ++ + + W
Sbjct: 207 RSGSIELG-RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYK-DVISW 264
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ + T+L ++A ++ RW V
Sbjct: 265 NILIGGYT-HLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHV 320
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L ++ VF ++E NL WN++ G A+ AL ++ MI + PN TF +L +
Sbjct: 13 LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72
Query: 152 CTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C +EG + + GY + V + ++ + + LEDA ++ S + +
Sbjct: 73 CAKLKASKEGLQIHGHVLKLGYELDLYV--HTSLISMYVQNERLEDAHKVFDRSSHR-DV 129
Query: 211 VIWGALLGG 219
V + AL+ G
Sbjct: 130 VSYTALVTG 138
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 214/331 (64%), Gaps = 1/331 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+++WT M+T Y+QN +AL+AF +M +G+ D+V++ +SACA LGA+
Sbjct: 240 PVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAV 299
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
I + G +V +GS LVDMYAKCG +D + VF ++EKN++ ++S+I GLA HG
Sbjct: 300 WIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHG 359
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A++A+A+F+ M+ +VEPN VTFI VL+AC+HAG+V+EGR F M Y I P +H
Sbjct: 360 RANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADH 419
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGL+ +AL+L++S +P+ +WGALLG C++H N ++A +A L LE
Sbjct: 420 YTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLE 479
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL N A W EV+K+R M+ G++K SS+ + V+QF A D +
Sbjct: 480 PEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNT 539
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI +L +L +LKLA YVP L +++
Sbjct: 540 HPWMHEIKKTLLELRARLKLAGYVPVLSSVV 570
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ + ++SW +I+ +S KQ EA F++M G+ PD T AT+L CA+L ++LG
Sbjct: 538 LAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 597
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ D YI S LVDMY+KCG++ L+F K ++ WN+++ G A H
Sbjct: 598 KQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQH 657
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F+ M ENV+PN TF++VL AC H GLVE+G F SM Y + P++EH
Sbjct: 658 GLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEH 717
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VD++ ++G + ALELI F+ +AVIW LL CK+H N+E+A A ++ LE
Sbjct: 718 YSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLE 777
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +S LL N+YA W EVTK+R M+ G++K PG SWIE++ +V+ F DK+
Sbjct: 778 PEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKE-PGCSWIEIKSEVHAFLVGDKA 836
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY +L L +++K Y+P+ + +L
Sbjct: 837 HPRSKEIYENLDVLTDEMKWVGYMPDTDFIL 867
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 134/253 (52%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SW +I + QN + L F M SG+ PD+ T +VL ACA AL+ G
Sbjct: 437 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG 496
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH +++ +D ++G AL+DMY+KCG ++++ + +L E+ + WN+II G ++
Sbjct: 497 MEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 556
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ EA F +M+ V+P+ T+ ++L C + VE G ++ + + +
Sbjct: 557 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG-KQIHAQIIKKELQSDAYI 615
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+VD+ SK G ++D +LI + V W A++ G H E A + + E M LE
Sbjct: 616 SSTLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA-LKIFEYMQLE 673
Query: 241 ---PNNSGYCTLL 250
PN++ + +L
Sbjct: 674 NVKPNHATFLAVL 686
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW ++I+ Y N R+ +D F +M G D+ T A VL +C+ L G
Sbjct: 134 MPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGG 193
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH +++GFD DV GSAL+DMYAKC LD S+ F + EKN W++II G +
Sbjct: 194 IQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQN 253
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
L +F M V + TF SV +C AGL
Sbjct: 254 DDLRGGLELFKEMQKAGVGVSQSTFASVFRSC--AGL 288
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW+ +I QN R L+ F EM+ +G+ Q T A+V +CA L AL LG
Sbjct: 235 MPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLG 294
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F DV IG+A +DMY KC +L + +F L NL +N+II G A
Sbjct: 295 SQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARS 354
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMT--CGYSITPE 177
EAL MF + + + V+ AC G +E + LSM C +I
Sbjct: 355 DKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 414
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
++D+ K G L +A L+ +AV W A++ + + N E
Sbjct: 415 ----NAILDMYGKCGALVEAC-LVFEEMVSRDAVSWNAIIAAHEQNGNEE 459
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 133/261 (50%), Gaps = 22/261 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ S+ +I Y+++ + EAL F ++ SG+ D+V+++ ACA + G
Sbjct: 336 LPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEG 395
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H M+ ++ + +A++DMY KCG+L + LVF ++ ++ WN+II +
Sbjct: 396 LQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQN 455
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
G + L++F M+ +EP+ T+ SVL AC AG + ++ CG I +
Sbjct: 456 GNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC--AG--------WQALNCGMEIHNRIIK 505
Query: 179 EHYG-------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
G ++D+ SK G++E A E + + V W A++ G L + E A
Sbjct: 506 SRLGLDSFVGIALIDMYSKCGMMEKA-EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQK 564
Query: 232 AVNEL--MILEPNNSGYCTLL 250
+++ M ++P+N Y T+L
Sbjct: 565 TFSKMLEMGVDPDNFTYATIL 585
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 41/219 (18%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T + + C+ AL G++ H ++ F V++ + L+ MY KC L+ + VF +
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP----------NG---------- 142
+++ WN+++ G A G A +FD M +V NG
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163
Query: 143 -----------VTFISVLSACT----HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
TF VL +C+ H G ++ L++ G+ +V ++D+
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ---IHGLAVKMGFDC--DVVTGSALLDM 218
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+K L+ +++ S + N V W A++ GC + +L
Sbjct: 219 YAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCVQNDDL 256
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 214/332 (64%), Gaps = 3/332 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+++WT M+T Y+QN +AL+AF +M +G+ D+V++ +SACA LGA+
Sbjct: 251 PVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAA 310
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ + G +V +GS LVDMYAKCG +D + VF + +KN++ ++S+I GLA HG
Sbjct: 311 WVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHG 370
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A++ +A+F+ M+ +VEPN VTFI VL+AC+HAG+V+EGR F M Y I P +H
Sbjct: 371 RANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADH 430
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL+++GL+ +AL+L++S +P+ +WGALLG C++H N E+A IA L LE
Sbjct: 431 YACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLE 490
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE-MERKVYQFAASDK 299
P G LL N A W EV+K+R M+ G++K P SW E + V+QF A D
Sbjct: 491 PEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKD-PAVSWFEGRDGFVHQFFAGDN 549
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP+ EI L +L E+L LA YVP L +++
Sbjct: 550 THPSMHEIKKRLLELREKLNLAGYVPILSSVV 581
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 212/331 (64%), Gaps = 4/331 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W +MI Y +N +F EAL +F M +S + PD+ T A+V++ACA LGAL+
Sbjct: 105 MPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHA 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++Q +++ + SAL+DMY+KCG ++ + VF + ++ WNS+I GLAVH
Sbjct: 165 QWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVH 224
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M ENV P+ +TF+ +L AC+H GLV+EGR+ F M YSI P++EH
Sbjct: 225 GLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEH 284
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AGLL++A +I + +P+ ++W LL C+ HRN E+ +AV I
Sbjct: 285 YGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEVAVAN--ISG 342
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + Y LL N+Y +RW ++R MKE G+ KR G SW E E V++F A DKS
Sbjct: 343 PKSGDY-VLLSNIYCSQNRWDNAQEVREMMKEEGVRKR-RGKSWFEWEDVVHRFRAGDKS 400
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++ +Y L L ++ KL +VP E ++
Sbjct: 401 HPETEALYKILEGLIQRTKLEGFVPSTELVM 431
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 35/220 (15%)
Query: 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD--- 93
I PD +L AC + E H +++ G+ + I ++L+ Y C L+
Sbjct: 7 ILPDHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAY 66
Query: 94 ---RSLL---------------------------VFFKLREKNLFCWNSIIEGLAVHGFA 123
R + VF K+ ++++ WNS+I G +G
Sbjct: 67 QVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKF 126
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL F M+ NVEP+ TF SV++AC G + + + I
Sbjct: 127 EEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHA-QWLHDLMVQKRIEVNFILSSA 185
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ SK G +E A E+ S + + + +W +L+ G +H
Sbjct: 186 LIDMYSKCGRIETAKEVFESVE-RNDVSVWNSLINGLAVH 224
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ISWTTMI+ Y Q +EAL F+EM+NS + PD V++A LSACA LGAL+ G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + +D +G L+DMYAKCG ++ +L VF +++K++ W ++I G A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA++ F M ++PN +TF +VL+AC++ GLVEEG+ F SM Y++ P +EH
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGLL++A I+ +PNAVIWGALL C++H+N+E+ L+ ++
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 446
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G N++A +W + + R MKE G+ K PG S I +E ++F A D+S
Sbjct: 447 PYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK-VPGCSTISLEGTTHEFLAGDRS 505
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++I S + +L+ YVPELE ML
Sbjct: 506 HPEIEKIQSKWRIMRRKLEENGYVPELEEML 536
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 39/253 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D W MI +S + + +L + M S + T ++L AC++L A + +IH
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA------ 118
+ ++G++ DVY ++L++ YA G+ + L+F ++ E + WNS+I+G
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 119 --------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSACT 153
+ G+ EAL +F M +VEP+ V+ + LSAC
Sbjct: 199 IALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACA 258
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNA 210
G +E+G+ +L+ T I + GC ++D+ +K G +E+ALE+ ++ K + +
Sbjct: 259 QLGALEQGKWIHSYLNKT---RIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSV 313
Query: 211 VIWGALLGGCKLH 223
W AL+ G H
Sbjct: 314 QAWTALISGYAYH 326
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD---RSLLVFFKLREKNLFCWNSIIEGL 117
++IH +++ G D Y + + S D + +VF + F WN +I G
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFL 166
+ +L ++ RM+ + N TF S+L AC+ HA + + G +
Sbjct: 91 SCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDV 150
Query: 167 ----SMTCGYSIT---------------PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
S+ Y++T P+ + ++ KAG ++ AL L R +
Sbjct: 151 YAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA-E 209
Query: 208 PNAVIWGALLGG 219
NA+ W ++ G
Sbjct: 210 KNAISWTTMISG 221
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 217/323 (67%), Gaps = 2/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT+M++ +++ F+E+L F +M+ I PD++T+ VLSACA GALD G+ I
Sbjct: 75 KDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYI 134
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
HL + + + D+ + +ALVDMYAKCGS+D +L VF ++R +N+F WN++I GLA+HG
Sbjct: 135 HLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHG 194
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+++FD+M + + P+ VTFI++L AC+HAGLV+EG F +M + I P +EHYGC
Sbjct: 195 EDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGC 254
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL +A ++DAL I + + N+V+W LLG C+ + ++A ++ LEP++
Sbjct: 255 VVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDS 314
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G +L N+YA VS+W K+R MK GIEK PG SWIE+ ++QF A D+SH
Sbjct: 315 CGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEK-TPGCSWIELNGMIHQFVAGDRSHLQ 373
Query: 304 SDEIYSSLSKLDEQLKL-ASYVP 325
+++IY+ + ++ ++ L +VP
Sbjct: 374 TEQIYAMIEEMTRRVNLDGGHVP 396
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 120/197 (60%), Gaps = 2/197 (1%)
Query: 33 KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
K + PD+VTM +++ ACA LG L+ G+ +H Y ++G D ++ + +A++DMY KC +
Sbjct: 3 KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ + VF ++REK++ W S++ GLA G+ E+LA+F +M +EP+ +T + VLSAC
Sbjct: 63 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
G +++G+ L + + I ++ +VD+ +K G ++ AL++ R + + N
Sbjct: 123 AQTGALDQGKYIHLLID-KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFT 180
Query: 213 WGALLGGCKLHRNLEIA 229
W A++GG +H + E A
Sbjct: 181 WNAMIGGLAMHGHGEDA 197
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 43/179 (24%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +W MI + + +A+ F++M+ + PD VT +L AC+H G +D G
Sbjct: 173 MRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEG 232
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ M+ F I+ + +VD+ + +D
Sbjct: 233 LAM-FQAMKNKFQIEPRMEHYGCVVDLLCRARKVD------------------------- 266
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG---LVEEGRRRFLSM---TCG 171
+ALA + M ++ N V + ++L AC G L E+ RR + + +CG
Sbjct: 267 ------DALAFIENM---PIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCG 316
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/314 (44%), Positives = 207/314 (65%), Gaps = 2/314 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +IS++ MI Y + +FREALD F E+ + I P + +VL ACA+LGALD+G
Sbjct: 180 MPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVG 239
Query: 61 REIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R ++ YV Q D +D I +AL+DM+ KCGS++ +LLVF +EK++ W +++ GLA+
Sbjct: 240 RWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAM 299
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + + F++M+ V+PNGVTF+++LS C+H+GLV EG F M + + P VE
Sbjct: 300 HGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVE 359
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GC+VDLL +AGL++ A++LI F+PNA IWG+LL C++++N+EI +A L+
Sbjct: 360 HFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKD 419
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N LL++Y E RW EV K+++ MKE+G K PG S IE+ Y+F DK
Sbjct: 420 EPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKG-PGCSLIEVGGICYEFVVGDK 478
Query: 300 SHPASDEIYSSLSK 313
SHP + EI +LSK
Sbjct: 479 SHPCAVEICLNLSK 492
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 40/278 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM Y+ + AL M G PD T +L AC+ L L G+E+H +
Sbjct: 56 YNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQAL 115
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA---------- 118
+ G V++ ++L+ +Y +D + VF + +++ W +++ A
Sbjct: 116 KFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARK 175
Query: 119 --------------------VHGFA-HEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
V G EAL +F + +EP+ +SVL AC + G
Sbjct: 176 VFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGA 235
Query: 158 VEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
++ GR ++ + G + + ++D+ K G +E AL + +K + + W A
Sbjct: 236 LDVGRWVYSYVCQSKGDYVDSRIA--TALIDMFFKCGSIEHALLVFEGAK-EKHVGEWTA 292
Query: 216 LLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+L G +H L I E M+ ++PN + LL
Sbjct: 293 MLSGLAMH-GLGEQLIEAFEKMVDSGVKPNGVTFVALL 329
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 211/319 (66%), Gaps = 3/319 (0%)
Query: 1 MPARDIISWTTMI-TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP +++++W MI +C N F EAL+ F EM+ S + PD+VTM LSAC+ LGALD
Sbjct: 347 MPEKNVVAWNAMIGSCVQANLSF-EALELFREMQWSNMKPDKVTMLHCLSACSQLGALDT 405
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G H Y+ + +DV +G+AL+DMYAKCG++ ++L VF ++ +N W +II GLA+
Sbjct: 406 GMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLAL 465
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G ++A+ F +MI + P+ +TF+ VL+AC H GLVEEGR+ F M ++++P+ +
Sbjct: 466 YGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPK 525
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMV+LL +AGLLE+A ELI++ + +A++WGAL C +HRNL I A ++L+ L
Sbjct: 526 HYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDL 585
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P++SG LL NMY E +W E IR M E G+EK PGSS IE+ + +F DK
Sbjct: 586 DPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEK-TPGSSSIEVNGIINEFIVRDK 644
Query: 300 SHPASDEIYSSLSKLDEQL 318
SHP S++IY + +++ +
Sbjct: 645 SHPQSEQIYECFNLINKTI 663
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 137/257 (53%), Gaps = 33/257 (12%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW ++I Y + +Q REA+ + +M + PD+VTM V+SACA L +L LGREI
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREI 277
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG-- 121
H Y+ + G ++ + + +AL+DMY KCG L+ ++F +R+K + W ++I G A +G
Sbjct: 278 HRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLL 337
Query: 122 -----------------------------FAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ EAL +F M + N++P+ VT + LSAC
Sbjct: 338 DMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSAC 397
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ G ++ G + ++++ +V ++D+ +K G + AL++ + N++
Sbjct: 398 SQLGALDTGMWTH-NYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLT 455
Query: 213 WGALLGGCKLHRNLEIA 229
W A++GG L+ N+ A
Sbjct: 456 WTAIIGGLALYGNVNDA 472
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 7/218 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ SW +I +++ ++ L + M +G PD T + + CA+L +G EI
Sbjct: 117 NVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEI 176
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
V+++GFD D+Y+ + ++ M G + VF + ++L WNS+I G
Sbjct: 177 LGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQP 236
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHY 181
EA+ ++ +MI E+V+P+ VT I V+SAC ++ GR R++ + + ++
Sbjct: 237 REAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEES---GLNLKISLV 293
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K G LE L + + + V W ++ G
Sbjct: 294 NALMDMYVKCGDLEAGKVLFDNMR-KKTVVSWTTMIVG 330
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/331 (43%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W MI Y+QN EAL F M + P++VT+ +VLSAC LGAL+ G
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 209
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ G +V++G+ALVDMY+KCGSL+ + LVF K+ +K++ WNS+I G A+H
Sbjct: 210 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 269
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ EAL +F M + P +TFI +LSAC H+G V EG F M Y I P++EH
Sbjct: 270 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 329
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMV+LL +AG +E A EL+++ +P+ V+WG LLG C+LH + + V L+
Sbjct: 330 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 389
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL N+YA V W V ++R MK+ G++K PG S IE+ KV++F A +
Sbjct: 390 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKE-PGCSSIEVNNKVHEFLAGGLN 448
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY L +++ LK Y P+ + +L
Sbjct: 449 HPKRKEIYMMLEEINGWLKSHGYTPQTDIVL 479
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A++ YAK G LD + ++F + E++ CWN +I+G +G +EAL +F RM+ +
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
PN VT +SVLSAC G +E G R S I V +VD+ SK G LEDA
Sbjct: 188 PNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-R 245
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
L+ + V W +++ G +H
Sbjct: 246 LVFDKIDDKDVVAWNSMIVGYAMH 269
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH + + G D + L YA G LD S+ +F + + ++F W +II G A+ G
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A +FD M E + V+ ++L+ G ++ R F M + +
Sbjct: 108 DVVSAQQLFDTM----PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-----W 158
Query: 182 GCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGC 220
M+D ++ G+ +AL L R +K +PN V ++L C
Sbjct: 159 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SWTTM+ +SQN +AL+ F M G P+ T+ + LSACA +GALD G
Sbjct: 267 MPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAG 326
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ GF +++ IG+ALVDMYAKCG+++ + VF + +EK L W+ +I G A+H
Sbjct: 327 LRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIH 386
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F+ M + +P+ V F++VL+AC+H+G V EG + F +M GY I P ++H
Sbjct: 387 GHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKH 446
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y +VD+L +AG L++AL+ IR+ P+ V+WGAL C+ H+N+E+A +A +L+ LE
Sbjct: 447 YTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLE 506
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G L N YA V RW + ++RV+M++ G K PG S+IE++ K+++F A D +
Sbjct: 507 PKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKD-PGWSFIEVDHKLHRFVAGDNT 565
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H + EIYS L ++ + Y E+E +L
Sbjct: 566 HNRAVEIYSKLDEISASAREKGYTKEIECVL 596
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 118/289 (40%), Gaps = 72/289 (24%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I ++N +F ++ F M ISPD++T VL + A L +GR +H ++
Sbjct: 108 FNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGIL 167
Query: 69 QIGFDIDVYIGSALVDMYAKC-----------------------------------GSLD 93
+ G + D ++ +LVDMY K G L
Sbjct: 168 KFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLV 227
Query: 94 RSLLVFFKLREKNLFCWNSIIEGL--------------------------AVHGFAH--- 124
++ +F + +K+ WNS+I G V+GF+
Sbjct: 228 KATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGD 287
Query: 125 --EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEH 180
+AL F M+ E PN T +S LSAC G ++ G R +LS G+ + +
Sbjct: 288 PEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGN-GFKLNLVIG- 345
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+VD+ +K G +E A ++ +K + +IW ++ G +H + A
Sbjct: 346 -TALVDMYAKCGNIEHAEKVFHETK-EKGLLIWSVMIWGWAIHGHFRKA 392
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 53/296 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMY-AKCGSL---DRSLLVFFKLREKNLFCWNSIIEG 116
R+IH + + +V+ S +V + + C SL D ++ +F + KN + +N++I G
Sbjct: 59 RQIHGQL----YRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRG 114
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG---YS 173
LA + +++ F M+ + P+ +TF VL + A L G R ++ CG +
Sbjct: 115 LAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSA--AALSNGGVGR--ALHCGILKFG 170
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV------IWGALLGGCKLHRNLE 227
+ + +VD+ K L AL++ S P +V IW L+ G +L
Sbjct: 171 LEFDSFVRVSLVDMYVKVEELGSALKVFDES---PESVKNGSVLIWNVLIHGYCRMGDL- 226
Query: 228 IAHIAVNELMILEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
+ EL P ++G L+N + ++ ++ V M E + SW
Sbjct: 227 ---VKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNV------VSWTT 277
Query: 287 MERKVYQFAASDK------------SHPASDEIYSSLS------KLDEQLKLASYV 324
M Q +K + P I S+LS LD L++ +Y+
Sbjct: 278 MVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYL 333
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++W MIT Y+QN EA+ F+ MK +G+ PD++T+A VLSAC+ +GAL+LG E+
Sbjct: 294 KDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSEL 353
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y G +VY+G+ALVDMYAKCG LD+++ VF K+R KN+ WN++I GLA +G
Sbjct: 354 DGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQG 413
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+ F+ M E+ ++P+ +TFI VLSAC HAGLV++G+R F S+T + I P++EHY
Sbjct: 414 DEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYS 473
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL+++G LE+ + I + +AV+ GALL C+ +N+EI +N ++ LEP
Sbjct: 474 CMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPT 533
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + K+R M+E G+ K PG SW+E+ KV +F A D+
Sbjct: 534 NSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNK-TPGCSWVEISGKVLEFYAGDEPQH 592
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAM 330
+D++Y L L ++++L YVP L+ +
Sbjct: 593 GADDMYQVLDLLVDEMRLEGYVPNLDVV 620
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P+RD++SW M+ Y + E +M K+ + P+ VT+A VL+AC G L L
Sbjct: 189 IPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVL 248
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + + G + D +GSALV MY KCG + + VF + +K++ WN++I G A
Sbjct: 249 GRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQ 308
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G ++EA+++F M V P+ +T VLSAC+ G +E G +C + V
Sbjct: 309 NGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASC-RGLYNNVY 367
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G L+ A+E+ R + + N W AL+ G
Sbjct: 368 VGTALVDMYAKCGDLDKAIEVFRKMRCK-NVASWNALICG 406
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
M +++ SW +I + N Q EA+ F M+N G+ PD +T VLSAC H G +
Sbjct: 392 MRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKD 451
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
G+ + QI I+ Y S +VD+ A+ G L+ K+ +K
Sbjct: 452 GKRWFNSLTSEFQIIPKIEHY--SCMVDLLARSGHLEEVWDFIEKIPDK 498
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 216/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW TMI Q F EA++ F EM+N GI D+VTM + SAC +LGALDL
Sbjct: 424 MLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA 483
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + Y+ + +D+ +G+ALVDM+++CG ++ VF ++ ++++ W + I +A+
Sbjct: 484 KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAME 543
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +F+ M+ + V+P+ V F+++L+AC+H G V++GR+ F SM + I P + H
Sbjct: 544 GNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVH 603
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLLE+A++LI+S +PN V+WG+LL C+ H+N+E+AH A +L L
Sbjct: 604 YGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLA 663
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL N+YA +W +V ++R+ MKE G++K PGSS IE++ +++F + D+S
Sbjct: 664 PERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQK-VPGSSSIEVQGLIHEFTSGDES 722
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H + I L +++ +L A YVP+ +L
Sbjct: 723 HAENTHIGLMLEEINCRLSEAGYVPDTTNVL 753
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 147/281 (52%), Gaps = 17/281 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT++I YS +EA+ F +M +G+ P+ VTM V+SACA L L+LG
Sbjct: 191 MLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELG 250
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++ Y+ ++G ++ + +ALVDMY KCG + + +F + KNL +N+I+ H
Sbjct: 251 KKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH 310
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A + L + D M+ + P+ VT +S ++AC G + G+ Y + +E
Sbjct: 311 EWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSH-----AYVLRNGLEG 365
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPN--AVIWGALLGGCKLHRNLEIAHIAVN 234
+ ++D+ K G E A ++ + PN V W +L+ G ++E+A +
Sbjct: 366 WDNISNAIIDMYMKCGKREAACKVF---EHMPNKTVVTWNSLIAGLVRDGDMELAWRIFD 422
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
E+ LE + + T ++ +VS + E ++ M+ GI
Sbjct: 423 EM--LERDLVSWNT-MIGALVQVSMFEEAIELFREMQNQGI 460
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 90/155 (58%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I Y+ +A+ + +M GI PD+ T +LSAC+ + AL G ++H V+
Sbjct: 98 YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G + D+++ ++L+ YA+CG +D +F + E+N+ W S+I G + + EA++
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+F +M VEPN VT + V+SAC +E G++
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKK 252
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 132/284 (46%), Gaps = 43/284 (15%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ + T+++ Y ++ + L +EM G PD+VTM + ++ACA LG L +G+
Sbjct: 295 KNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSS 354
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCG-------------------------------SL 92
H YV++ G + I +A++DMY KCG +
Sbjct: 355 HAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDM 414
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ + +F ++ E++L WN++I L EA+ +F M + + + VT + + SAC
Sbjct: 415 ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC 474
Query: 153 THAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
+ G ++ + C Y I +++ +VD+ S+ G A+ + + + +
Sbjct: 475 GYLGALDLAK-----WVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KR 528
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLL 250
+ W A +G + N E A NE++ ++P++ + LL
Sbjct: 529 DVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+LF +N +I G A G +A+ ++ +M+ + P+ TF +LSAC+ + EG
Sbjct: 94 SLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEG 149
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 144/331 (43%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W MI Y+QN EAL F M + P++VT+ +VLSAC LGAL+ G
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 275
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ G +V++G+ALVDMY+KCGSL+ + LVF K+ +K++ WNS+I G A+H
Sbjct: 276 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 335
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ EAL +F M + P +TFI +LSAC H+G V EG F M Y I P++EH
Sbjct: 336 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 395
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMV+LL +AG +E A EL+++ +P+ V+WG LLG C+LH + + V L+
Sbjct: 396 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 455
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL N+YA V W V ++R MK+ G++K PG S IE+ KV++F A +
Sbjct: 456 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKE-PGCSSIEVNNKVHEFLAGGLN 514
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY L +++ LK Y P+ + +L
Sbjct: 515 HPKRKEIYMMLEEINGWLKSHGYTPQTDIVL 545
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 37/249 (14%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+ WT +I ++ +AL+ + +M G+ P+ T +++L C ++ G+ +H
Sbjct: 93 VFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHS 148
Query: 66 YVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLDR 94
+++GFD D+Y+ + L+D+YA K G LD
Sbjct: 149 QAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDA 208
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ ++F + E++ CWN +I+G +G +EAL +F RM+ +PN VT +SVLSAC
Sbjct: 209 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 268
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G +E G R S I V +VD+ SK G LEDA L+ + V W
Sbjct: 269 LGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWN 326
Query: 215 ALLGGCKLH 223
+++ G +H
Sbjct: 327 SMIVGYAMH 335
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH + + G D + L YA G LD S+ +F + + ++F W +II G A+ G
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL + +M+ + VEPN TF S+L C +E G+ ++ +
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGK----------ALHSQAVKL 153
Query: 182 GCMVDLLSKAGLLE 195
G DL + GLL+
Sbjct: 154 GFDSDLYVRTGLLD 167
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 210/323 (65%), Gaps = 1/323 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A+D ++W +MI+ ++QN + EAL+ F EM G+ VT+++VLSACA L A+ G+E
Sbjct: 512 AKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKE 571
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ D++ SAL+DMY KCG+L+ + VF + EKN WNSII +G
Sbjct: 572 IHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGL 631
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E++++ M E + + VTF++++SAC HAG V+EG R F MT Y I P +EH+
Sbjct: 632 VKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFA 691
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL S+AG L+ A+ELI F+P+A IWGALL C++HRN+E+A IA EL L+P+
Sbjct: 692 CMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPH 751
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSGY L+ N+ A RW V+K+R MK+ ++K PG SW+++ + F A+DKSHP
Sbjct: 752 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQK-IPGYSWVDVNNTSHLFVAADKSHP 810
Query: 303 ASDEIYSSLSKLDEQLKLASYVP 325
S++IY SL + +L+ Y+P
Sbjct: 811 DSEDIYMSLKSILLELREEGYIP 833
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 2/216 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A D++ +TMI+ Y N +EA+ F + GI P+ V +A+VL ACA + A+ LG+E
Sbjct: 411 AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE 470
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y ++ ++ Y+ SAL+DMYAKCG LD S +F K+ K+ WNS+I A +G
Sbjct: 471 LHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGE 530
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F M E V+ + VT SVLSAC + G+ + G I ++
Sbjct: 531 PEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG-PIRADLFAES 589
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
++D+ K G LE A + S + N V W +++
Sbjct: 590 ALIDMYGKCGNLEWAHRVFESMP-EKNEVSWNSIIA 624
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 116/218 (53%), Gaps = 4/218 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI+ QN +AL F +M+ SGI PD VT+ ++L A L + G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ +DV++ SALVD+Y KC ++ + V+ + ++ +++I G ++
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLN 427
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G + EA+ MF ++ + + PN V SVL AC ++ G+ ++ Y VE
Sbjct: 428 GMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE 487
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ +K G L D I S + V W +++
Sbjct: 488 --SALMDMYAKCGRL-DLSHYIFSKISAKDEVTWNSMI 522
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W M+ Y + A++ F +M+ SG P+ T+A LS A L G
Sbjct: 207 MAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G + +V + + LV MYAKC LD +F + +L WN +I G +
Sbjct: 267 VQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQN 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF +AL +F M + P+ VT +S+L A T +G+
Sbjct: 327 GFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGK 368
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 4/216 (1%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ W +I + +R AL + +M S PD T V+ +CA LGA+ LGR +H
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+G D D+++GSAL+ MYA G L + VF + E++ WN +++G G
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F M EPN T LS + G + ++ Y + EV +
Sbjct: 230 SAVELFGDMRASGCEPNFATLACFLSVSATESDLFFG-VQLHTLAVKYGLESEVAVANTL 288
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
V + +K L+D +L + + V W ++ GC
Sbjct: 289 VSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGC 323
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW ++I Y +E++ M+ G D VT ++SACAH G + G
Sbjct: 611 MPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEG 670
Query: 61 REIHLYVM---QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEG 116
+ + QI ++ + + +VD+Y++ G LD+++ + + K + W +++
Sbjct: 671 LRLFRCMTEEYQIAPRMEHF--ACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHA 728
Query: 117 LAVH 120
VH
Sbjct: 729 CRVH 732
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W+ +I Y+ N +EALD F EM+ + PD M V SAC+ LGAL+LG
Sbjct: 264 MVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG 323
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ F + +G+AL+D YAKCGS+ ++ VF +R K+ +N++I GLA+
Sbjct: 324 NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMC 383
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F +M+ ++P+G TF+ +L CTHAGLV++G R F M+ +S+TP +EH
Sbjct: 384 GHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEH 443
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL ++AGLL +A +LIRS + N+++WGALLGGC+LH++ ++A + +L+ LE
Sbjct: 444 YGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELE 503
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG+ LL N+Y+ RW E KIR ++ + G++K PG SW+E++ V++F D S
Sbjct: 504 PWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQK-LPGCSWVEVDGVVHEFLVGDTS 562
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S +IY L L + L+ A Y P E +L
Sbjct: 563 HPLSHKIYEKLESLFKDLREAGYNPTTEFVL 593
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 139/252 (55%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++SWT +I Y ++ F EAL F + G+ PD T+ +L AC+ +G L G
Sbjct: 163 IPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASG 222
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ + G +V++ ++LVDMYAKCGS++ + VF + EK++ CW+++I+G A +
Sbjct: 223 RWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASN 282
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M ENV P+ + V SAC+ G +E G M ++ V
Sbjct: 283 GMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLG 342
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++D +K G + A E+ + + + + V++ A++ G + ++ A +++
Sbjct: 343 TA-LIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVG 400
Query: 239 LEPNNSGYCTLL 250
++P+ + + LL
Sbjct: 401 MQPDGNTFVGLL 412
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 3/219 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLG 60
P +I + T+I N FR+A+ + M+ G +PD T VL AC L +G
Sbjct: 62 PHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVG 121
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V++ GFD DV++ + LV +Y+K G L + VF ++ EKN+ W +II G
Sbjct: 122 LSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIES 181
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F ++ + P+ T + +L AC+ G + GR M S+ V
Sbjct: 182 GCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVG-NVFV 240
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G +E+A + + + V W AL+ G
Sbjct: 241 ATSLVDMYAKCGSMEEARRVF-DGMVEKDVVCWSALIQG 278
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 44 MATVLSACAHLG--ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK 101
M + L C G +L ++ H ++++G D Y+ + L+ + + +VF +
Sbjct: 1 MGSELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQ 60
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT------HA 155
N+F +N++I G+ + +A++++ M P+ TF VL ACT H
Sbjct: 61 TPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHV 120
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
GL L + G+ V+ +V L SK G L DA ++ + N V W A
Sbjct: 121 GLSLHS----LVIKTGFDWDVFVKT--GLVCLYSKNGFLTDARKVFDEIP-EKNVVSWTA 173
Query: 216 LLGG 219
++ G
Sbjct: 174 IICG 177
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 212/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++ W MI + ++ + EAL FNEM+ SG+ D+VTMA++L AC HLGAL+LG
Sbjct: 299 MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H+Y+ + ++DV +G+ALVDMYAKCGS++ ++ VF ++ EK++ W ++I GLA+
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M V+P+ +TF+ VL+AC+HAGLV EG F SM Y I P +EH
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AG + +A +LI++ P+ + LL C++H NL +A A +L+ L+
Sbjct: 479 YGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELD 538
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N+Y+ + W K+R M E I K+ PG S IE+ V++F D S
Sbjct: 539 PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI-KKPPGCSAIEVGGVVHEFVKGDVS 597
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY +L + +LK A YVP+ +L
Sbjct: 598 HPQSSEIYETLDDMMRRLKSAGYVPDKSEVL 628
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW TMI Y+Q EA+ F M+ + + P+++T+ VL+ACA L+
Sbjct: 198 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETA 257
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ + G + SAL+D+Y KCG + +F K+ EKNLFCWN +I G
Sbjct: 258 KQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVED 317
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL++F+ M V+ + VT S+L ACTH G +E G+ + + I +V
Sbjct: 318 SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE-KEKIEVDVAL 376
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G +E A+ + + + + + W AL+ G
Sbjct: 377 GTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVG 414
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + ++I Y+ R+A+ + M G+ PD+ T ++ +C G L G
Sbjct: 100 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEG 156
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + ++GF D YI + L++MY+ CG L + VF K+ K++ W ++I A
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
HEA+ +F RM +V+PN +T ++VL+AC + +E ++
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQ 259
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 22/205 (10%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREK 105
L C + L ++IH +++ +D + S +V A GSL + LVF ++
Sbjct: 47 LEKCTTMSQL---KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
F NSII G +A+ + M+ + ++P+ TF S+ +C G++ EG++
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLH 160
Query: 166 L-SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG------ 218
S G++ +++ ++++ S G L A ++ + V W ++G
Sbjct: 161 CHSTKLGFASDAYIQN--TLMNMYSNCGCLVSARKVF-DKMVNKSVVSWATMIGAYAQWD 217
Query: 219 ----GCKLHRNLEIAHIAVNELMIL 239
KL R +EIA + NE+ ++
Sbjct: 218 LPHEAIKLFRRMEIASVKPNEITLV 242
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 211/326 (64%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +ISWT +I + + F EAL+ F +M+ S + PD+VT+ TVLSACA+LGAL LG
Sbjct: 105 MPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y ++ G +V I ++L+D+Y++CG+++ + VF K+ E+ L WNSII GLA +
Sbjct: 165 LWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAAN 224
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL FD M + +PN V+F L+AC+H GLV+EG + F M + I+P +EH
Sbjct: 225 GFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEH 284
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL S+AG LEDA+ ++++ +PN V+ G+LL C+ ++E+A +N L+ L+
Sbjct: 285 YGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLD 344
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P LL N+YA V RW K R+ MK LGI+K+ PG S IE+ +++F A DKS
Sbjct: 345 PGADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKK-PGFSSIEIGCDIHEFVAGDKS 403
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
H +++IYS L L L YVPE
Sbjct: 404 HDKAEDIYSMLELLSFDQALCGYVPE 429
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 37 ISPDQVTMATVLSACAHLGAL--DLGREIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLD 93
I P+ VT T+LS CA L + LG +H Y ++G D ++ +G+ALVDMYAKCG ++
Sbjct: 6 IDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVE 65
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-------------------I 134
S L F +L+ KN F WN++I+G +G EA+ +FD M +
Sbjct: 66 LSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGL 125
Query: 135 YE------------NVEPNGVTFISVLSACTHAGLVEEG---RRRFLSMTCGYSITPEVE 179
+E VEP+ VT ++VLSAC + G + G R L + V+
Sbjct: 126 FEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKK----GLRDNVK 181
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA--HIAVNELM 237
++DL S+ G +E A ++ + V W +++GG + E A H + +
Sbjct: 182 ICNSLIDLYSRCGAIELARQVFEKMG-ERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQ 240
Query: 238 ILEPNNSGYCTLL 250
+PN+ + L
Sbjct: 241 GFKPNDVSFTGAL 253
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y++ E+L F++M+ G+ PD+V M TV+ ACA LGA+
Sbjct: 897 MXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 956
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ + F +DV +G+A++DM+AKCG ++ + +F ++ EKN+ W+++I H
Sbjct: 957 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 1016
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ + PN +T +S+L AC+HAGLVEEG R F M YS+ +V+H
Sbjct: 1017 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKH 1076
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++AL+LI S + + +WGA LG C+ H+++ +A A L+ L+
Sbjct: 1077 YTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQ 1136
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G+ LL N+YA RW +V KIR M + + K+ PG +WIE++ K +QF+ D +
Sbjct: 1137 PQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRL-KKIPGWTWIEVDNKSHQFSVGDTT 1195
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L L +L+L YVP+ +L
Sbjct: 1196 HPRSKEIYEMLKSLGNKLELVGYVPDTNFVL 1226
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y++ + E+L F +M+ G+ PD+V M TV+ ACA LGA+
Sbjct: 221 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 280
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ + F +DV +G+A++DMYAKCG ++ + +F ++ EKN+ W+++I H
Sbjct: 281 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 340
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ + P+ +T S+L AC+HAGLVEEG R F SM YS+ +V+H
Sbjct: 341 GQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKH 400
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++AL+LI+S + + +WGA LG C+ H+++ +A A L+ L+
Sbjct: 401 YTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 460
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G+ LL N+YA RW +V KIR M + + K+ PG +WIE++ K +QF+ D +
Sbjct: 461 SQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL-KKTPGWTWIEVDNKSHQFSVGDTT 519
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L L +L+L YVP+ +L
Sbjct: 520 HPRSKEIYEMLKSLSNKLELVGYVPDTNFVL 550
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 20/232 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW+ M+ +++ + F E+ G PD T+ V+ AC L L +G
Sbjct: 796 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG 855
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V + G D+D ++ +ALVDMY KC ++ + +F K+ E++L W +I G A
Sbjct: 856 RLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAEC 915
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRF-LSMTCG 171
G A+E+L +FD+M E V P+ V ++V+ AC G + + R++F L + G
Sbjct: 916 GNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG 975
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ M+D+ +K G +E A E+ + + N + W A++ H
Sbjct: 976 TA----------MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 1016
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW+ M+ +++ + F E+ G PD T+ V+ AC L L +G
Sbjct: 120 MCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG 179
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V + G D+D ++ +ALVDMY KC ++ + +F K++E++L W +I G A
Sbjct: 180 RLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAEC 239
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRF-LSMTCG 171
G A+E+L +F++M E V P+ V ++V+ AC G + + R++F L + G
Sbjct: 240 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 299
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ M+D+ +K G +E A E+ + + N + W A++ H
Sbjct: 300 TA----------MIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 340
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 6/161 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H G ++ + + LV Y+ +LD + +F + ++ W+ ++ G A
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G F +I P+ T V+ AC ++ GR L Y +++H
Sbjct: 815 GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGR---LIHHIVYKFGLDLDH 871
Query: 181 YGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ C +VD+ K +EDA + + + V W ++GG
Sbjct: 872 FVCAALVDMYGKCREIEDA-RFLFDKMXERDLVTWTVMIGG 911
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL 107
+SA + L R++H G ++ + + L+ Y+ +LD + +F + ++
Sbjct: 66 ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
W+ ++ G A G F +I P+ T V+ AC ++ GR L
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGR---LI 182
Query: 168 MTCGYSITPEVEHYGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
Y +++H+ C +VD+ K +EDA L + + + V W ++GG
Sbjct: 183 HHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVMIGG 235
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 212/322 (65%), Gaps = 3/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP+R+++ WTTMI+ YS NKQ+ +AL F M + GI P+ VT+ ++L ACA+L AL++
Sbjct: 139 MPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEI 198
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIEGLA 118
G+ + Y + GF + Y +A+++MY KCG +D + VF ++ +NL WNS++ GLA
Sbjct: 199 GQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLA 258
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG +AL ++D+M+ E P+ VTF+ +L ACT G+V++GR F S T + I P++
Sbjct: 259 VHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKL 318
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AG L +A E+I+S +P++VIWGALLG C H N+E+A IA L +
Sbjct: 319 EHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELAEIAAESLFV 378
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G +L N+YA +W V K+R MK I K G S+IE ++++F D
Sbjct: 379 LEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSA-GHSFIEEGAQLHKFIVKD 437
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
+SHP S+EI++ L + E +KL
Sbjct: 438 RSHPKSNEIFALLDGVYEMVKL 459
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 9 WTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
+ +I YS + Q + +++++ G P+Q T + SAC L + LG+ +H +
Sbjct: 14 YNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTHF 73
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ GF+ D++ +AL+DMYAK G+L+ + +F ++ + + WN+++ GLA G AL
Sbjct: 74 IKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGAL 133
Query: 128 AMFDRMIYENV--------------------------------EPNGVTFISVLSACTHA 155
+F M NV PN VT +S+L AC +
Sbjct: 134 ELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANL 193
Query: 156 GLVEEGRR 163
+E G+R
Sbjct: 194 XALEIGQR 201
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISWT MI Y + F E+L+ F EM+++G+ PD+ TM +VL+ACAHLG+L++G
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + DV +G+AL+DMY KCG +++ VF + +++ F W +++ GLA +
Sbjct: 388 EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANN 447
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F +M +++P+ +T++ VLSAC H+G+V++ R+ F M + I P + H
Sbjct: 448 GQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AGL+++A E++R PN+++WGALLG +LH + +A +A +++ LE
Sbjct: 508 YGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N LL N+YA RW ++ ++R + ++ I K+ PG S IE+ ++F A DKS
Sbjct: 568 PDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI-KKTPGFSLIEVNGFAHEFVAGDKS 626
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S+EIY L +L ++ A+Y+P+ +L
Sbjct: 627 HLQSEEIYMKLEELAQESTFAAYLPDTSELL 657
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 37/248 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW MI+ Y++ K++ E+++ EM+ + +SP VT+ VLSAC+ + DL + +H
Sbjct: 200 DVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV + + + + +ALV+ YA CG +D ++ +F ++ +++ W SI++G G
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLK 319
Query: 125 EALAMFDRM--------------------------IYENVE-----PNGVTFISVLSACT 153
A FD+M I+ ++ P+ T +SVL+AC
Sbjct: 320 LARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACA 379
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
H G +E G + ++ I +V ++D+ K G E A ++ Q +
Sbjct: 380 HLGSLEIGEWIKTYIDKN---KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKF 435
Query: 212 IWGALLGG 219
W A++ G
Sbjct: 436 TWTAMVVG 443
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 118/239 (49%), Gaps = 3/239 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDL 59
+P D++ W MI +S+ E + + M G++PD T +L+ G AL
Sbjct: 94 IPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALAC 153
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+++H +V++ G ++Y+ +ALV MY+ CG +D + VF + ++++F WN +I G
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
E++ + M V P VT + VLSAC+ ++ +R P +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHEYVSECKTEPSLR 272
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+V+ + G ++ A+ + RS K + + + W +++ G NL++A +++ +
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPV 330
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 214/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W ++I +++N + EAL + EM GI PD T+ ++LSACA +GAL LG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H+Y++++G +++ + L+D+YA+CG ++ + +F ++ +KN W S+I GLAV+
Sbjct: 242 KRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EA+ +F M E + P +TF+ +L AC+H G+V+EG F M+ Y I P +E
Sbjct: 302 GLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIE 361
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL++AG ++ A E I QPN VIW LLG C +H + ++A +A +++ L
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQL 421
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+SG LL NMYA RW++V KIR M G+ K PG S +E+ +V++F DK
Sbjct: 422 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRK-VPGHSLVEVGNRVHEFLMGDK 480
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SHP +D IY+ L ++ ++L+L YVP++
Sbjct: 481 SHPQNDMIYAKLKEMTDRLRLEGYVPQI 508
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 117/216 (54%), Gaps = 3/216 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREI 63
++ W T+I Y++ A+ + EM+ SG + PD T +L A + + LG I
Sbjct: 84 NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ GF +Y+ ++L+ +YA CG + + VF K+ EK+L WNS+I G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EALA++ M + ++P+G T +S+LSAC G + G+R + M +T +
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMI-KVGLTRNLHSSNV 262
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL ++ G +E+A L N+V W +L+ G
Sbjct: 263 LLDLYARCGRVEEAKTLF-DEMVDKNSVSWTSLIVG 297
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 214/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI+SW+TMI Y+ N ++ALD F +M++ + PD TM VLSACA LGALDLG
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + F + +G+AL+DMY+KCGS+ ++ +F +++K+ WN+++ GL+++
Sbjct: 336 IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMN 395
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ++F + + P+ TFI +L CTH G V EGR+ F +M +S+TP +EH
Sbjct: 396 GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEH 455
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL +A +LI + +PNAV+WGALLGGCKLH++ +A + +L+ LE
Sbjct: 456 YGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELE 515
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG L N+Y+ RW E KIR MKE I+K SWIE++ V++F DKS
Sbjct: 516 PWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQK-IRACSWIEIDGIVHEFLVGDKS 574
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S++IY+ L +L +LK +VP E +L
Sbjct: 575 HWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 144/260 (55%), Gaps = 20/260 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++SWT +IT Y + FREA+ AF ++ G+ PD ++ VL+ACA LG G
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG 234
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ G +V++ ++L+DMY KCG+L+R+ L+F + EK++ W+++I+G A +
Sbjct: 235 EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
G +AL +F +M EN++P+ T + VLSAC G ++ G R FLS
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLS----- 349
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL--HRNLEIAH 230
P + ++D+ SK G + A E+ + K + + V+W A++ G + H +
Sbjct: 350 --NPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMVGLSMNGHAKAVFSL 404
Query: 231 IAVNELMILEPNNSGYCTLL 250
++ E + P+ + + LL
Sbjct: 405 FSLVEKHGIRPDENTFIGLL 424
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 140/303 (46%), Gaps = 36/303 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I W TMI F +A+ + M+ G P+ T+ VL ACA + LG +IH
Sbjct: 78 NIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIH 137
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G+D DV++ ++L+ +Y KC + D +L VF + +KN+ W +II G G
Sbjct: 138 SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFR 197
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLS--------------- 167
EA+ F +++ ++P+ + + VL+AC G G R++S
Sbjct: 198 EAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLL 257
Query: 168 ---MTCG--------YSITPE--VEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ CG +S PE + + M+ + GL + AL+L ++S +P+
Sbjct: 258 DMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCY 317
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEP--NNSGYCTLLLNMYAEVSRWAEVTKIRVA 269
+L C L++ I + LM +N T L++MY++ + +I A
Sbjct: 318 TMVGVLSACATLGALDLG-IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTA 376
Query: 270 MKE 272
MK+
Sbjct: 377 MKK 379
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++ D D Y+ + ++ GS + S LVF +++E N+F WN++I GL
Sbjct: 33 KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+A+ ++ M PN T VL AC V G + L + GY V+
Sbjct: 93 DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ L K +DAL++ N V W A++ G
Sbjct: 153 --TSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITG 189
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/325 (43%), Positives = 204/325 (62%), Gaps = 2/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ ISWTT+I Y + + EA N+M PDQ T A LS+CAHL AL +G
Sbjct: 177 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVG 235
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H VM+ G+ D+++ +AL+ MYAKCGS+ + L+F + ++ WNS+I A++
Sbjct: 236 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 295
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M E V P+ VTF+ +LSAC+H GL+++G + F M Y+I P EH
Sbjct: 296 GNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEH 355
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG LE+A +L+R K NA IWGALLG C++H NLE+A A +L+ E
Sbjct: 356 YACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFE 415
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ + LL NM AE RW EV ++R MKE G EK+ PG SWIE++ +V+ F + D +
Sbjct: 416 PHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQ-PGWSWIELQNRVHAFLSEDPA 474
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + E+ L L ++ +P
Sbjct: 475 HPRAVELCHILRSLTAHMRNTGDMP 499
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 44/257 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI----------------------- 37
MPA+D++SW +M+T Y++N + R L F EM +
Sbjct: 53 MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 112
Query: 38 ----SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI----DVYIGSALVDMYAKC 89
+P+ V+ T+L A G + R + FD +V +A++ Y +
Sbjct: 113 EKIPNPNTVSWVTMLCGFARFGKIAEARRL--------FDQMPIRNVVAWNAMIAAYVQN 164
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+D ++ +F ++ EKN W ++I G G EA + ++M Y N +P+ TF L
Sbjct: 165 CHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGL 223
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
S+C H ++ G++ L M GY+ V + ++ + +K G + A EL+
Sbjct: 224 SSCAHLAALQVGKQLHQLVMKSGYATDLFVSN--ALITMYAKCGSISSA-ELLFKDIDHF 280
Query: 209 NAVIWGALLGGCKLHRN 225
+ V W +L+ L+ N
Sbjct: 281 DVVSWNSLIAAYALNGN 297
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 122/288 (42%), Gaps = 48/288 (16%)
Query: 12 MITCYSQNKQFREALDAFNEM-----------------KNSGI-----------SPDQVT 43
MITCY++N + +A + FN + KN + D V+
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
++L+ G + LG L + + DV + +VD + + G L+ S F K+
Sbjct: 61 WNSMLTGYTRNGEMRLG----LQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP 116
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
N W +++ G A G EA +FD+M NV V + ++++A V+E
Sbjct: 117 NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV----VAWNAMIAAYVQNCHVDEAIS 172
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF--QPNAVIWGALLGGCK 221
F+ M SI+ + +++ + G L++A +L+ + +P+ + L C
Sbjct: 173 LFMEMPEKNSIS-----WTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCA 227
Query: 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269
L++ +++L++ SGY T L A ++ +A+ I A
Sbjct: 228 HLAALQVGK-QLHQLVM----KSGYATDLFVSNALITMYAKCGSISSA 270
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 206/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++WT++I SQN + EAL+ F +M+ G+ P+ VT+ +++ AC ++ AL G+EIH
Sbjct: 340 NVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIH 399
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G DVY+GSAL+DMYAKCG + + F K+ NL WN++++G A+HG A
Sbjct: 400 CFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAK 459
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E + MF M+ +P+ VTF VLSAC GL EEG R + SM+ + I P++EHY C+
Sbjct: 460 ETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACL 519
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LLS+ G LE+A +I+ F+P+A +WGALL C++H NL + IA +L LEP N
Sbjct: 520 VTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNP 579
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W E +IR MK G+ K PG SWIE+ KV+ A D+SHP
Sbjct: 580 GNYILLSNIYASKGLWDEENRIREVMKSKGLRKN-PGYSWIEVGHKVHMLLAGDQSHPQM 638
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+I L KL+ Q+K + Y+P+ +L
Sbjct: 639 KDILEKLDKLNMQMKKSGYLPKTNFVL 665
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW M+ + N + EA+ F M G PD T++ VL A L + +G ++H
Sbjct: 204 NLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVH 263
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ G D ++ SA++DMY KCG + VF ++ E + N+ + GL+ +G
Sbjct: 264 GYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVD 323
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
AL +F++ + +E N VT+ S++++C+ G E F M Y + P
Sbjct: 324 TALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ-AYGVEP 374
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + S++++I ++++ F L F+ + + PD + + + +CA L ALD G
Sbjct: 64 LPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPG 123
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + GF D + S+L MY KC + + +F ++ ++++ W+++I G +
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRL 183
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC------GYSI 174
G EA +F M VEPN V++ +L+ + G +E F M G ++
Sbjct: 184 GLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTV 243
Query: 175 TPEVEHYGCMVDLLSKA 191
+ + GC+ D++ A
Sbjct: 244 SCVLPAVGCLEDVVVGA 260
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M A +++SW ++ Y+ + + +E ++ F+ M SG PD VT VLSACA G + G
Sbjct: 437 MSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEG 496
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
R + + G + + + LV + ++ G L+ + + ++ E + W +++
Sbjct: 497 WRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCR 556
Query: 119 VH 120
VH
Sbjct: 557 VH 558
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISWT MI Y + F E+L+ F EM+++G+ PD+ TM +VL+ACAHLG+L++G
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + DV +G+AL+DMY KCG +++ VF + +++ F W +++ GLA +
Sbjct: 388 EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANN 447
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F +M +++P+ +T++ VLSAC H+G+V++ R+ F M + I P + H
Sbjct: 448 GQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AGL+++A E++R PN+++WGALLG +LH + +A +A +++ LE
Sbjct: 508 YGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N LL N+YA RW ++ ++R + ++ I K+ PG S IE+ ++F A DKS
Sbjct: 568 PDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI-KKTPGFSLIEVNGFAHEFVAGDKS 626
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S+EIY L +L ++ A+Y+P+ +L
Sbjct: 627 HLQSEEIYMKLEELAQESTFAAYLPDTSELL 657
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 37/248 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW MI+ Y++ K++ E+++ EM+ + +SP VT+ VLSAC+ + DL + +H
Sbjct: 200 DVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV + + + + +ALV+ YA CG +D ++ +F ++ +++ W SI++G G
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLK 319
Query: 125 EALAMFDRM--------------------------IYENVE-----PNGVTFISVLSACT 153
A FD+M I+ ++ P+ T +SVL+AC
Sbjct: 320 LARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACA 379
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
H G +E G + ++ I +V ++D+ K G E A ++ Q +
Sbjct: 380 HLGSLEIGEWIKTYIDKN---KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKF 435
Query: 212 IWGALLGG 219
W A++ G
Sbjct: 436 TWTAMVVG 443
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 134/276 (48%), Gaps = 6/276 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDL 59
+P D++ W MI +S+ E + + M G++PD T +L+ G AL
Sbjct: 94 IPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALAC 153
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+++H +V++ G ++Y+ +ALV MY+ CG +D + VF + ++++F WN +I G
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
E++ + M V P VT + VLSAC+ ++ +R P +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHEYVSECKTEPSLR 272
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+V+ + G ++ A+ + RS K + + + W +++ G NL++A +++ +
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
+ + T++++ Y + E +I M+ G+
Sbjct: 332 DRIS---WTIMIDGYLRAGCFNESLEIFREMQSAGM 364
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 201/321 (62%), Gaps = 2/321 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +W+ MI Y QN+ EAL F EM G+ P+ ++ ++L+ CA L LD GRE+
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREV 355
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ FD+DV+ SAL+ MY KCG+LD++ VF K++ WNS+I G A HG
Sbjct: 356 HAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG 415
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F M + P+G+T+I L+AC++ G V+EGR F SMT SI P EHY C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++GL+E+A +LI++ +P+AVIWGAL+G C++HRN EIA A +L+ LEP N
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN 535
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK-SHP 302
+G LL ++Y V RW + +K+R + + K PG SWIE +++V+ F + D +HP
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNK-SPGCSWIEYDKRVHLFTSGDVLAHP 594
Query: 303 ASDEIYSSLSKLDEQLKLASY 323
I L KLD L + Y
Sbjct: 595 EHAAILRILEKLDGLLMESGY 615
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 118/252 (46%), Gaps = 37/252 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++WT M++ Y Q + EA F+EM + V+ ++S A G ++L
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLA 224
Query: 61 R----------EIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLD 93
R E+ M +G+ + V +A++ + + G +D
Sbjct: 225 RKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVD 284
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF K+ E++ W+++I+ + F EAL+ F M++ V PN + IS+L+ C
Sbjct: 285 AAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCA 344
Query: 154 HAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP-NAV 211
+++ GR +M C + + +V ++ + K G L+ A + + F+P + V
Sbjct: 345 ALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIV 400
Query: 212 IWGALLGGCKLH 223
+W +++ G H
Sbjct: 401 MWNSMITGYAQH 412
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 21/221 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL-DL 59
MP+RD+ S+ +I+ S +Q DA + + P V+ ++L G L D
Sbjct: 74 MPSRDLASYNALISGLSLRRQ--TLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADA 131
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + V +G L G ++ + +F ++ ++++ W +++ G
Sbjct: 132 IRLFQQMPERNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQ 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EA A+FD M NV V++ +++S G V R+ F + PE
Sbjct: 187 AGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLF-------EVMPERN 235
Query: 180 HYGCMVDLLS--KAGLLEDALELIRSSKFQPNAVIWGALLG 218
L+ +AG +EDA EL + P A ++G
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI+SW+TMI Y+ N ++ALD F +M++ + PD TM VLSACA LGALDLG
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + F + +G+AL+DMY+KCGS+ ++ +F ++ K+ WN+++ GL+++
Sbjct: 336 IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMN 395
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ++F + + P+ TFI +L CTH G V EGR+ F +M +S+TP +EH
Sbjct: 396 GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEH 455
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL +A +LI + +PNAV+WGALLGGCKLH++ +A + +L+ LE
Sbjct: 456 YGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELE 515
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG L N+Y+ RW E KIR MKE I+K SWIE++ V++F DKS
Sbjct: 516 PWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQK-IRACSWIEIDGIVHEFLVGDKS 574
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S++IY+ L +L +LK +VP E +L
Sbjct: 575 HWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 144/260 (55%), Gaps = 20/260 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++SWT +IT Y + FREA+ AF ++ G+ PD ++ VL+ACA LG G
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG 234
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ G +V++ ++L+DMY KCG+L+R+ L+F + EK++ W+++I+G A +
Sbjct: 235 EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMTCGY 172
G +AL +F +M EN++P+ T + VLSAC G ++ G R FLS
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLS----- 349
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL--HRNLEIAH 230
P + ++D+ SK G + A E+ + K + + V+W A++ G + H +
Sbjct: 350 --NPVLG--TALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAMMVGLSMNGHAKAVFSL 404
Query: 231 IAVNELMILEPNNSGYCTLL 250
++ E + P+ + + LL
Sbjct: 405 FSLVEKHGIRPDENTFIGLL 424
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 36/303 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I W TMI F +A+ + M+ G P+ T+ VL ACA + LG +IH
Sbjct: 78 NIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIH 137
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G+D DV++ ++L+ +Y KC + D +L VF + +KN+ W +II G G
Sbjct: 138 SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFR 197
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLS--------------- 167
EA+ F +++ ++P+ + + VL+AC G G R++S
Sbjct: 198 EAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLL 257
Query: 168 ---MTCG--------YSITPE--VEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ CG +S PE + + M+ + GL + AL+L ++S +P+
Sbjct: 258 DMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCY 317
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEP--NNSGYCTLLLNMYAEVSRWAEVTKIRVA 269
+L C L++ I + LM +N T L++MY++ + +I A
Sbjct: 318 TMVGVLSACATLGALDLG-IWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTA 376
Query: 270 MKE 272
MK
Sbjct: 377 MKR 379
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++ D D Y+ + ++ GS + S LVF +++E N+F WN++I GL
Sbjct: 33 KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+A+ ++ M PN T VL AC V G + L + GY V+
Sbjct: 93 DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ L K +DAL++ N V W A++ G
Sbjct: 153 --TSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITG 189
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 217/334 (64%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD ++W +ITCY++N++ ++AL F EM K+S PD VT +L AC+ LGALD
Sbjct: 182 MPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALD 241
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++ Y + G+ ++ + ++L+ MY +CG +D++ VF +K++ W ++I GLA
Sbjct: 242 FGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLA 301
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+GF ++A+++F+ MI +V P+ TF VLSAC+H+GLV+EG R F M C Y + P V
Sbjct: 302 ANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 361
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
HYGC+VDL+ +AGLL++A E + + K P+A IW LLG C++H ++++ + L+
Sbjct: 362 RHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLI 421
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN YA V W++V++IR M+E GI+ PG + +E V++F A
Sbjct: 422 ELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQT-TPGCTTVEHNGTVHEFIAD 480
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D +HP EIY +LS++ +QL++A YVP + + L
Sbjct: 481 DDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSEL 514
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
+L R++H V+ G D + ++L+ YA G D + +F ++ ++ WN +I
Sbjct: 136 SLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLIT 195
Query: 116 GLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGY 172
A + +AL +F+ M ++ EP+ VT I +L AC+ G ++ G + + + GY
Sbjct: 196 CYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGY 255
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
E++ ++ + + G ++ A + S Q + V W A++ G
Sbjct: 256 G--GELKVRNSLITMYLRCGCVDKAYRVF-SGTPQKSVVTWTAMISG 299
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 212/326 (65%), Gaps = 1/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D I W ++IT +SQ+ + EA+ F +M G+ D VT++ LSACA++ AL G+EI
Sbjct: 377 KDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEI 436
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ F+ D++ SAL++MYAKCG L+ + LVF ++EKN WNSII HG+
Sbjct: 437 HGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYL 496
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
++LA+F M+ E ++P+ +TF+++LS+C HAG VE+G R F MT Y I ++EHY C
Sbjct: 497 ADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYAC 556
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M DL +AG L++A E+I S F P A +WG LLG C++H N+E+A +A L+ LEP N
Sbjct: 557 MADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKN 616
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL ++ A+ +W V KI+ MKE G++K PG SWIE+ F A+D SHP
Sbjct: 617 SGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQK-VPGCSWIEVNNTTCVFFAADGSHPE 675
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEA 329
S +IYS L L +L+ YVP+ A
Sbjct: 676 SPQIYSLLKSLLLELRKVGYVPQAVA 701
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 136/250 (54%), Gaps = 8/250 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ +T MI+ Y N ++AL+ F + + P+ +T +++L ACA L A+ LGRE+H
Sbjct: 277 DIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELH 336
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y+++ + +GSA+++MYAKCG LD + L+F ++ K+ CWNSII + G
Sbjct: 337 GYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPE 396
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M E V+ + VT + LSAC + + G+ M G + ++ +
Sbjct: 397 EAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKG-AFESDLFDMSAL 455
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNELMILE 240
+++ +K G L A L+ + + N V W +++ H +L + H + E ++
Sbjct: 456 INMYAKCGKLNIA-RLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEG--IQ 512
Query: 241 PNNSGYCTLL 250
P++ + T+L
Sbjct: 513 PDHITFLTIL 522
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 10/221 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++ W MI Y QN +A FNEM ++GI PD +T + L + A +L
Sbjct: 172 MPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQI 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G +DVY+ SAL+D+Y KC + +F + ++ + ++I G ++
Sbjct: 232 KEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLN 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F ++ + + PN +TF S+L AC ++ GR GY I E+E
Sbjct: 292 GMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELH-----GYIIKNELEE 346
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++++ +K G L D LI +A+ W +++
Sbjct: 347 KCPVGSAIMNMYAKCGRL-DLAHLIFGRISIKDAICWNSII 386
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 139/313 (44%), Gaps = 46/313 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D + W MI Y Q + A+ F +M +S PD VT A VLS ++ G
Sbjct: 71 MIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYG 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H V++ G D +G+ LV +Y+K L + +F + + +L WN +I G +
Sbjct: 131 RQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQN 190
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEG-------- 161
GF +A +F+ MI ++P+ +TF S L + H +V G
Sbjct: 191 GFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLN 250
Query: 162 --------RRRFLSMTC---GYSITPEVEHYGCMVDLLSKAGLLEDALELIR---SSKFQ 207
+ R M C S ++ Y M+ G+ +DALE+ R K
Sbjct: 251 SALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMI 310
Query: 208 PNAVIWGALLGGC------KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR-- 259
PNA+ + ++L C KL R L +I NEL P S ++NMYA+ R
Sbjct: 311 PNALTFSSILPACAGLAAIKLGRELH-GYIIKNELEEKCPVGSA----IMNMYAKCGRLD 365
Query: 260 WAEVTKIRVAMKE 272
A + R+++K+
Sbjct: 366 LAHLIFGRISIKD 378
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 7/239 (2%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M G+ PD+ T V+ C L + LG+ I ++++GFD+D+++ S+L+ +YA G
Sbjct: 1 MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
++ + F K+ +K+ WN +I G G + A+ +F M+ +P+ VTF VLS
Sbjct: 61 IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120
Query: 152 CTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+VE GR+ L + G P V + +V + SK L DA +L Q +
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGN--TLVTVYSKGRQLGDARKLFDMMP-QIDL 177
Query: 211 VIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIR 267
V+W ++GG + ++ A + NE++ ++P++ + + L ++ AE S ++ +I
Sbjct: 178 VVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSL-AESSSLKQIKEIH 235
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ++W ++I Y + ++L F+ M GI PD +T T+LS+C H G ++ G
Sbjct: 475 MQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDG 534
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
R + G + + + D++ + G LD + V + W +++
Sbjct: 535 VRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACR 594
Query: 119 VHG 121
VHG
Sbjct: 595 VHG 597
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 206/327 (62%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISWT+++T YSQ ++ +A++ F+ M+ GI+P+Q T ++VL +CA+L L+ G
Sbjct: 437 MEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYG 496
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + ++G D+D I SALVDMYAKCG L + VF ++ + W +II G A H
Sbjct: 497 QQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQH 556
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM+ VEPN VTF+ VL AC+H GLVEEG + F M Y + PE+EH
Sbjct: 557 GIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEH 616
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLLS+ G L DA+E I +PN ++W LLG C++H N+E+ +A +++ +
Sbjct: 617 YACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFK 676
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NS LL N Y E + + +R MKE G++K PG SWI + +++F A D+
Sbjct: 677 AENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKE-PGCSWISVNGTLHKFYAGDQQ 735
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP D+IY+ L +L +L VP+L
Sbjct: 736 HPEKDKIYAKLEELKLKLISLDDVPDL 762
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ SWT +I ++N F + + F EM++ GI PDQ + +L C L +++LG
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ GF ++ +AL++MYAK ++ S VF + E N+ WN++I G +
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A +F RM+ E V P+ TFI V A V + + GY++ V+
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE-----VSGYALELGVDS 305
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSS----KFQP--NAVIWGALLGG 219
++D+ SK G L++A + S +F NA+I G L G
Sbjct: 306 NTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 5/246 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI+ Y ++ +AL+ F +M + I D T +V +A A L L LG+++H +
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 69 QIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G +++ V I +A+ + YAKCGSL+ VF ++ +++L W S++ + +A+
Sbjct: 403 KSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAI 462
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+F M E + PN TF SVL +C + L+E G++ + C + + +VD+
Sbjct: 463 EIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH-GIICKVGLDMDKCIESALVDM 521
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL--EPNNSG 245
+K G L DA ++ + V W A++ G H ++ A ++ L EPN
Sbjct: 522 YAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVT 580
Query: 246 YCTLLL 251
+ +L
Sbjct: 581 FLCVLF 586
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 4/178 (2%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFK 101
+ +L C L + +H ++++ F + + + + Y+KC +D + +F +
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ ++N F W +I GLA +G + F M + + P+ + +L C +E G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ T ++++ +K +ED+ ++ + + N V W A++ G
Sbjct: 191 NMVHAQIVI-RGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT-EVNVVSWNAMITG 246
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 201/321 (62%), Gaps = 2/321 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +W+ MI Y QN+ EAL F EM G+ P+ ++ ++L+ CA L LD GRE+
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREV 355
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ FD+DV+ SAL+ MY KCG+LD++ VF K++ WNS+I G A HG
Sbjct: 356 HAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLG 415
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F M + P+G+T+I L+AC++ G V+EGR F SMT SI P EHY C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++GL+E+A +LI++ +P+AVIWGAL+G C++HRN EIA A +L+ LEP N
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN 535
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK-SHP 302
+G LL ++Y V RW + +K+R + + K PG SWIE +++V+ F + D +HP
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNK-SPGCSWIEYDKRVHLFTSGDVLAHP 594
Query: 303 ASDEIYSSLSKLDEQLKLASY 323
I L KLD L + Y
Sbjct: 595 EHAAILRILEKLDGLLMESGY 615
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 118/252 (46%), Gaps = 37/252 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++WT M++ Y Q + EA F+EM + V+ ++S A G ++L
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLA 224
Query: 61 R----------EIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLD 93
R E+ M +G+ + V +A++ + + G +D
Sbjct: 225 RKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVD 284
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF K+ E++ W+++I+ + F EAL+ F M++ V PN + IS+L+ C
Sbjct: 285 AAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCA 344
Query: 154 HAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP-NAV 211
+++ GR +M C + + +V ++ + K G L+ A + + F+P + V
Sbjct: 345 ALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIV 400
Query: 212 IWGALLGGCKLH 223
+W +++ G H
Sbjct: 401 MWNSMITGYAQH 412
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 21/221 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL-DL 59
MP+RD+ S+ +I+ S +Q DA + + P V+ ++L G L D
Sbjct: 74 MPSRDLASYNALISGLSLRRQ--TLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADA 131
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + V +G L G ++ + +F ++ ++++ W +++ G
Sbjct: 132 IRLFQQMPERNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQ 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EA A+FD M NV V++ +++S G V R+ F + PE
Sbjct: 187 AGRITEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLF-------EVMPERN 235
Query: 180 HYGCMVDLLS--KAGLLEDALELIRSSKFQPNAVIWGALLG 218
L+ +AG +EDA EL + P A ++G
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 192/274 (70%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT+MI Y+Q + +EA+D F EM+++G+ P++VT+ VL ACA +G L LG
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH + + G++ ++ + + L+DMY KCG L+ + +F + E+ + W+++I GLA H
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +ALA+F++MI V+PN VTFI +L AC+H G+VE+GR+ F SMT Y I P +EH
Sbjct: 325 GRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEH 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL S+AGLL++A E I + PN V+WGALLGGCK+H+N+++A A L L+
Sbjct: 385 YGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLD 444
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274
P N GY +L N+YAE RW +V ++R M++ G
Sbjct: 445 PLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 126/284 (44%), Gaps = 37/284 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ A ++ W T + +++ +A+ F ++ ISPD T + VL AC+ L + G
Sbjct: 73 LDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNG 132
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV ++G ++++ + +V +YA CG + + VF K+ ++++ WN +I L
Sbjct: 133 KIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKM 192
Query: 121 GFAHEALAMFDRMIYENVE-------------------------------PNGVTFISVL 149
G A A +F M NV PN VT ++VL
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVL 252
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC G + GRR S GY V ++D+ K G LEDA + + + +
Sbjct: 253 VACADMGNLVLGRRIHDFSNRSGYEKNIRV--CNTLIDMYVKCGCLEDACRIFDNME-ER 309
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
V W A++ G H E A N+++ ++PN + +L
Sbjct: 310 TVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 215/331 (64%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++ W ++I ++QN EAL+ F MK +G DQ T+ +VL AC L L+LG
Sbjct: 213 MPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELG 272
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H++V++ FD D+ + +AL+DMY KCGSL+ + F ++ EK++ W++++ GLA +
Sbjct: 273 RQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQN 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ +AL +F+ M PN +T + VL AC+HAGLVE+G F SM + + P EH
Sbjct: 331 GYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREH 390
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++DLL +AG L++A++LI + +P++V W LLG C++HRN+++A A +++ LE
Sbjct: 391 YGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELE 450
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G LL N+YA RW +V ++R M GI K PG SWIE++++++ F D S
Sbjct: 451 PEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRK-TPGCSWIEVDKQIHVFILGDTS 509
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI L+ L E++ YVP+ +L
Sbjct: 510 HPKIEEIVQRLNDLIERVMGVGYVPDTNFVL 540
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 8/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI+ YS NK +AL M G+ P+ T ++VL AC L L
Sbjct: 116 MPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL--- 171
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +++ G + DV++ SAL+D+Y+K LD +L VF ++ ++L WNSII G A +
Sbjct: 172 RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQN 231
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+EAL +F RM + T SVL ACT L+E GR+ + + ++
Sbjct: 232 SDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHV---LKFDQDLIL 288
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K G LEDA S + + + W ++ G
Sbjct: 289 NNALIDMYCKCGSLEDANSAF-SRMVEKDVISWSTMVAG 326
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
A+ A + M+ G+ D +T + ++ C+ GA+ G+ +H ++ G++ +++ + L+
Sbjct: 38 RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLL 97
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+MY K L+ + +F ++ E+N+ W ++I + + +AL M E V PN
Sbjct: 98 NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMF 156
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGY---SITPEVEHYGCMVDLLSKAGLLEDALEL 200
T+ SVL AC +G + CG + +V ++D+ SK L++AL +
Sbjct: 157 TYSSVLRAC-------DGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGV 209
Query: 201 IRSSKFQPNAVIWGALLGG 219
+ + V+W +++GG
Sbjct: 210 FDEMPTR-DLVVWNSIIGG 227
>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
Length = 864
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++W++M+ Y QNK + EAL + + + +Q T+++V+ AC++L AL G
Sbjct: 215 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 274
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + GF +V++ S+ VDMYAKCGSL S ++F +++EKNL WN+II G A H
Sbjct: 275 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 334
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E + +F++M + + PN VTF S+LS C H GLVEEGRR F M Y ++P V H
Sbjct: 335 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 394
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L +AGLL +A ELI+S F P A IWG+LL C++++NLE+A +A +L LE
Sbjct: 395 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 454
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W E+ K R +++ + K+ G SWI+++ KV+ F+ +
Sbjct: 455 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDV-KKVRGKSWIDIKDKVHTFSVGESG 513
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI S+L L + + Y P +E L
Sbjct: 514 HPRIREICSTLDNLVIKFRKFGYKPSVEHEL 544
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDL 59
M R ++SW TMI Y++N+ EALD F EM+N G + T+++VLSAC + AL+
Sbjct: 114 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 173
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H ++ D+++Y+G+AL+D+YAKCG + ++ VF +++K+ W+S++ G
Sbjct: 174 -KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQ 232
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ EAL ++ R ++E N T SV+ AC++ + EG ++ ++ C V
Sbjct: 233 NKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVF 291
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
VD+ +K G L ++ +I S + N +W ++ G H + I ++
Sbjct: 292 VASSAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQD 350
Query: 239 -LEPNNSGYCTLL 250
+ PN + +LL
Sbjct: 351 GMHPNEVTFSSLL 363
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L CA GA+ + H +++I + DV + + L++ Y+KCG ++ + VF + E++
Sbjct: 59 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-THAGLVEEGRRRF 165
L WN++I + EAL +F M E + + T SVLSAC + +E +
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 178
Query: 166 LSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR 224
LS+ TC I + ++DL +K G+++DA+++ S + ++V W +++ G ++
Sbjct: 179 LSVKTC---IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQNK 234
Query: 225 NLEIA 229
N E A
Sbjct: 235 NYEEA 239
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 210/332 (63%), Gaps = 7/332 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++I+W +I Y+QN + EAL F +K + P T VL+AC ++ L LG
Sbjct: 1086 MVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLG 1145
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
++ H++V++ GF + DV++G++LVDMY K GS+D VF ++ ++ WN++I
Sbjct: 1146 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 1205
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G A +AL +F+RM+ P+ VT I VLSAC H+GLVEEGRR F SMT + I
Sbjct: 1206 VGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGI 1265
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CM+DLL +AG L++ ELI+ +P+AV+W +LLG C+LH+N+E+ A
Sbjct: 1266 IPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAG 1325
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L L+P NSG LL NMYAE+ +WA+V ++R +MK G+ K+ PG SWIE+ RKV F
Sbjct: 1326 KLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQ-PGCSWIEIGRKVSVF 1384
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
A D HP +EI++ L + Q+ S E
Sbjct: 1385 LARDNGHPCKNEIHAILRIIQMQMSRVSVDSE 1416
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD SW ++I+ Y ++ AL A +M+ S ++P+Q T ++ L+ACA++ L G +I
Sbjct: 450 RDSYSWNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIFLLKQGMQI 508
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ G++ID + S L+DMY KC D S+ +F +++ WNS+I G A G
Sbjct: 509 HAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKG 568
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
L +FD M + ++ + VTF+ L +C G V GR F M SI P +EHY C
Sbjct: 569 EYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM-DESIIPRIEHYEC 627
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA---VNELMILE 240
M++LL K G + + + + F+P +W + C+ + N ++ A +N+ L
Sbjct: 628 MIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLT 687
Query: 241 P 241
P
Sbjct: 688 P 688
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+I+SW ++ITCY QN EAL F M +G PD+VT+A+V+SACA L A G
Sbjct: 953 MPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREG 1012
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCG----------------------------- 90
R++H V++ F D+ + +ALVDMYAKCG
Sbjct: 1013 RQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYAR 1072
Query: 91 --SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+++ + +VF ++ EKN+ WN +I A +G EAL +F R+ E+V P T+ +V
Sbjct: 1073 SANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNV 1132
Query: 149 LSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRS 203
L+AC + ++ G++ L + PE + + +VD+ K G ++D ++
Sbjct: 1133 LNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 1192
Query: 204 SKFQPNAVIWGALLGG 219
+ N V W A++ G
Sbjct: 1193 MAARDN-VSWNAMIVG 1207
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 11/225 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW M+T Y ++ AL F +M+ D +T+ +VLSAC G LD+G
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT--GILDIG 401
Query: 61 R--EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS--LLVFFKLREKNLFCWNSIIEG 116
+ E+H + ++ GF + +ALV MY+KCG L + LL+F E++ + WNS+I G
Sbjct: 402 KGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISG 461
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSIT 175
H + AL +M E V PN TF S L+AC + L+++G + M GY I
Sbjct: 462 YERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEID 520
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ ++D+ K + ++ + + + + ++W +++ GC
Sbjct: 521 DILR--SVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGC 562
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 9/205 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD SW +IT S+ EAL F+ M + GI P TMA+VLS CA L
Sbjct: 111 MPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGA 170
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ + F +V +G+ALVD+Y C L + F + E N WN I+ +
Sbjct: 171 RQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLA 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ MF RM+ V P G T + AC +EEGR + + EH
Sbjct: 231 GMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGR-----CIHAFVLRHGYEH 285
Query: 181 Y----GCMVDLLSKAGLLEDALELI 201
+ +VD+ +K G ++ A L
Sbjct: 286 HVHVRSSVVDMYAKCGAMDAAQSLF 310
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 138/282 (48%), Gaps = 40/282 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ ISW ++ Y A+D F M ++G+ P T++ + AC AL+ GR IH
Sbjct: 216 NAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIH 275
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLD--RSLL------------------------- 97
+V++ G++ V++ S++VDMYAKCG++D +SL
Sbjct: 276 AFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIA 335
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
VF ++E+NL WN+++ G AL +F +M E E + +T SVLSACT
Sbjct: 336 DAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT 395
Query: 154 HAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR-SSKFQPN 209
G+++ G+ ++ CG+ +P +++ +V + SK G L A L+ + +
Sbjct: 396 --GILDIGKGEEVHAFAIKCGFFSSPILKN--ALVRMYSKCGCLRSAERLLLFEMGSERD 451
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMI-LEPNNSGYCTLL 250
+ W +L+ G + H E A A+ ++ + PN S + + L
Sbjct: 452 SYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSAL 493
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 4/272 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S+ +I +Q+ + +AL M + + A+ LSACA G
Sbjct: 852 IPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTG 911
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V + DVYIGSAL+DMYAKC + + VF + E+N+ WNS+I +
Sbjct: 912 VQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQN 971
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M+ P+ VT SV+SAC EGR+ + ++
Sbjct: 972 GPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVL 1031
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+VD+ +K G A + + V +L+ G N+E A + +++ +E
Sbjct: 1032 SNALVDMYAKCGRTR-AARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQM--VE 1088
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
N + +L+ YA+ E ++ V +K
Sbjct: 1089 KNVIAW-NVLIAAYAQNGEEEEALRLFVRLKR 1119
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P+RD+I W +MI + + + LD F+EM+ GI D VT L +C G + LGR
Sbjct: 548 PSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGR 607
Query: 62 EIHLYVMQ 69
+M
Sbjct: 608 SYFTLMMD 615
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 6/146 (4%)
Query: 74 IDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
+ ++ + ++ A CGS+ R L LR+ WN+II + G EAL++F
Sbjct: 83 VPTFLFNRAIESLAACGSVADARELFDLMPLRDGG--SWNAIITASSRAGHPSEALSLFS 140
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
M + P T SVLS C L G R+ V +VD+
Sbjct: 141 NMNSLGIRPKDATMASVLSCCAEC-LDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNC 199
Query: 192 GLLEDALELIRSSKFQPNAVIWGALL 217
LL DA +PNA+ W ++
Sbjct: 200 FLLADARRAF-DDILEPNAISWNVIV 224
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 217/334 (64%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD ++W +ITCY++N++ ++AL F EM K+S PD VT +L AC+ LGALD
Sbjct: 196 MPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALD 255
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++ Y + G+ ++ + ++L+ MY +CG +D++ VF +K++ W ++I GLA
Sbjct: 256 FGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLA 315
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+GF ++A+++F+ MI +V P+ TF VLSAC+H+GLV+EG R F M C Y + P V
Sbjct: 316 ANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 375
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
HYGC+VDL+ +AGLL++A E + + K P+A IW LLG C++H ++++ + L+
Sbjct: 376 RHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLI 435
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN YA V W++V++IR M+E GI+ PG + +E V++F A
Sbjct: 436 ELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQT-TPGCTTVEHNGTVHEFIAD 494
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D +HP EIY +LS++ +QL++A YVP + + L
Sbjct: 495 DDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSEL 528
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
+L R++H V+ G D + ++L+ YA G D + +F ++ ++ WN +I
Sbjct: 150 SLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLIT 209
Query: 116 GLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGY 172
A + +AL +F+ M ++ EP+ VT I +L AC+ G ++ G + + + GY
Sbjct: 210 CYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGY 269
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
E++ ++ + + G ++ A + S Q + V W A++ G
Sbjct: 270 G--GELKVRNSLITMYLRCGCVDKAYRVF-SGTPQKSVVTWTAMISG 313
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 214/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGIS-PDQVTMATVLSACAHLGALD 58
MP ++++SW+ MI CY++N + EAL+ F EM N+ S P+ VTM +VL ACA AL+
Sbjct: 235 MPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALE 294
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ IH Y+++ G D + + SAL+ MYA+CG L+ L+F ++ +K++ WNS+I
Sbjct: 295 QGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYG 354
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG+ +A+ +F+ MI P+ ++FISVL AC+H GLVEEG++ F SM + I P V
Sbjct: 355 LHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSV 414
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L++A ++I + +P +WG+LLG C++H ++E+A A L
Sbjct: 415 EHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFK 474
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W EV +++ + ++K PG SWIE+ RK+Y F + D
Sbjct: 475 LEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQK-VPGRSWIEVRRKIYSFTSVD 533
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P +++++ L L ++K Y P+ + +L
Sbjct: 534 EFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVL 566
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 31/243 (12%)
Query: 3 ARDIISWTTMITCYSQNKQFR---------EALDAFNEMKNSGISPDQVTMATVLSACAH 53
AR + T T Y N FR + L+ + M G+S D+ T +L AC
Sbjct: 123 ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVA 182
Query: 54 ----LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+ L G+EIH ++++ G+ V++ + L+DMYA+ G + + VF ++ KN+
Sbjct: 183 SECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVS 242
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGR----- 162
W+++I A +G +EAL +F M+ + PN VT +SVL AC +E+G+
Sbjct: 243 WSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAY 302
Query: 163 --RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
RR L SI P + ++ + ++ G LE +LI + + V+W +L+
Sbjct: 303 ILRRGLD-----SILPVI---SALITMYARCGKLESG-QLIFDRMHKKDVVLWNSLISSY 353
Query: 221 KLH 223
LH
Sbjct: 354 GLH 356
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 39/229 (17%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
+P Q T ++ + A +L ++H ++ GFD D ++ + L++M+++ ++D +
Sbjct: 66 NPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARK 125
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT---- 153
VF K R++ ++ WN++ LA+ G ++ L ++ RM V + T+ +L AC
Sbjct: 126 VFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASEC 185
Query: 154 -----------HAGLVEEG--------------RRRFLSMTCGYSITPE-----VEHYGC 183
HA ++ G RF ++ ++ E V +
Sbjct: 186 LVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSA 245
Query: 184 MVDLLSKAGLLEDALELIRSSKFQ-----PNAVIWGALLGGCKLHRNLE 227
M+ +K G +ALEL R PN+V ++L C LE
Sbjct: 246 MIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALE 294
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 215/338 (63%), Gaps = 8/338 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++ W M+ Y+Q+ + EAL F +M SG+ PD+V++ LSA A LG + G
Sbjct: 214 LPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESG 273
Query: 61 REIHLYVMQIG----FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR---EKNLFCWNSI 113
R +H +V G ++ +G+ALVDMY KCGSL+ ++ VF L ++++ WN++
Sbjct: 274 RWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAM 333
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G A+HG + EAL F ++ + + P +TFI VL+AC+H+GLV+EGR F +M Y
Sbjct: 334 INGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYG 393
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
I P+VEHYGCMVDLL +AG +E+A +L++S K +P+A +W +LLG C+LH+NL +
Sbjct: 394 IVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVA 453
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
+ L+ NSG LL NMYA +W EV ++R M+ G++K PG S +E+ R+V +
Sbjct: 454 DYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKE-PGCSAVEVGRRVVE 512
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
F A D+SHP S EIY+ L +++ + +VP E +L
Sbjct: 513 FVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVL 550
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 42/261 (16%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDL 59
P + +T+ I +S R AL +EM G+ P T++ L AC G L +
Sbjct: 83 PDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAV 139
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMY--------------------------------A 87
GR +H Y +++ + Y+ +AL+ MY A
Sbjct: 140 GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYA 199
Query: 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
K G LD + +F L K+L CWN++++G HG EAL +F +M+ VEP+ V+ +
Sbjct: 200 KMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVL 259
Query: 148 VLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLLEDALELIR-- 202
LSA G E GR F++ + G +VD+ K G LE+A+ + R
Sbjct: 260 ALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDL 319
Query: 203 SSKFQPNAVIWGALLGGCKLH 223
+ V W A++ G +H
Sbjct: 320 GGGGDRDVVAWNAMINGYAMH 340
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 215/334 (64%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ ISW +M++ Y+QN + +AL FN+M+ S P+ VT ++SAC++LG+ LG
Sbjct: 294 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 353
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
R++H +V+ DID + +A++DMY KCG LD ++ +F +L E+++ WN +I G
Sbjct: 354 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 413
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EAL +F RM E VEPN +TF S+LSAC+HAGL++EGR+ F MT S+ PE+
Sbjct: 414 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEM 472
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVD+L +AG L +A LI+ +P+ +WGALL C++H N E+ IA N L
Sbjct: 473 KHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQ 532
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS-SWIEMERKVYQFAAS 297
LEP ++GY L+ N+YA ++W EV +R MK G++K P + S IE +V+ F +
Sbjct: 533 LEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK--PAAFSVIEFGTEVHGFHTA 590
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+S P E+Y + L ++K+ YVP+L +L
Sbjct: 591 DQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVL 624
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 140/253 (55%), Gaps = 4/253 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ WT MIT Y Q ++ +AL F +M+ G D++T +V SA LG +
Sbjct: 193 MLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA 252
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y + GF DV +G+++V MYAKCG+++R+ LVF ++ E+N WNS++ G +
Sbjct: 253 ISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQN 312
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL++F++M +PN VT + ++SAC++ G G R+ + + +
Sbjct: 313 GRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG-RKLHNFVISSKMDIDTTL 371
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKF-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++D+ K G L+ A+E+ + + + + W L+ G +H + + A + + +
Sbjct: 372 RNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE 431
Query: 239 -LEPNNSGYCTLL 250
+EPN+ + ++L
Sbjct: 432 GVEPNDITFTSIL 444
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 12/215 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDLGREIHLYVM 68
TM+ Y+ + EA+D + M+ G+ + T VL CA LGA+ G +H V+
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVV 159
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF D+++ +ALVDMYAKCG + + VF ++ +++ CW ++I +AL
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI----TPEVEHYGCM 184
+F +M E + +T ISV SA G + +GR GY++ +V +
Sbjct: 220 LFRKMQEEGFLGDEITAISVASA---VGQLGDGRMAI--SVHGYAVLNGFIGDVSVGNSI 274
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V + +K G +E A L+ + N + W ++L G
Sbjct: 275 VGMYAKCGNVERA-RLVFDRMEERNGISWNSMLSG 308
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 207/317 (65%), Gaps = 7/317 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++I+W +I Y+QN + EA+ F ++K I P T VL+AC ++ L LG
Sbjct: 345 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLG 404
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
++ H++V++ GF + DV++G++LVDMY K GS+D VF ++ ++ WN++I
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 464
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G A +AL +F+RM+ N P+ VT I VLSAC H+GLV+EGRR F MT + I
Sbjct: 465 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGI 524
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
TP +HY CMVDLL +AG L++A ELI+ +P++V+W +LLG C+LH+N+E+
Sbjct: 525 TPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAG 584
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L L+P NSG LL NMYAE+ +WA+V ++R +MK+ G+ K+ PG SWIE+ K+ F
Sbjct: 585 RLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ-PGCSWIEIGSKMNVF 643
Query: 295 AASDKSHPASDEIYSSL 311
A D HP +EI+S+L
Sbjct: 644 LARDNRHPCRNEIHSTL 660
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 170/368 (46%), Gaps = 65/368 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW ++ITCY QN EAL F EM +G PD+VT+++V+SACA L A G
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREG 271
Query: 61 REIHLY-VMQIGFDIDVYIGSALVDMYAKCG----------------------------- 90
R++H + V + D+ + +ALVDMYAKCG
Sbjct: 272 RQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAK 331
Query: 91 --SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+++ + +VF ++ EKN+ WN +I A +G EA+ +F ++ +++ P T+ +V
Sbjct: 332 SANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNV 391
Query: 149 LSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRS 203
L+AC + +++ G++ L + PE + + +VD+ K G ++D ++
Sbjct: 392 LNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 451
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
+ N V W A++ G + + A + + E M+ N T+
Sbjct: 452 MAARDN-VSWNAMIVGYAQNGRAKDA-LHLFERMLCSNENPDSVTM-------------- 495
Query: 264 TKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASY 323
+G+ C S ++ R+ + F D S + Y+ + L L A +
Sbjct: 496 ---------IGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDL---LGRAGH 543
Query: 324 VPELEAML 331
+ E E ++
Sbjct: 544 LKEAEELI 551
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 6/277 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFR--EALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
+P D S+ ++ +++ + +AL M + + A+ LSACA L
Sbjct: 109 IPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLR 168
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++H V + DV+IG+ALVDMYAKC + VF + E+N+ WNS+I
Sbjct: 169 TGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYE 228
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G EAL +F M+ P+ VT SV+SAC EGR+ M + ++
Sbjct: 229 QNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDM 288
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+VD+ +K G +A I S + V ++L G N+E A + +++
Sbjct: 289 VLNNALVDMYAKCGRTWEA-RCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQM-- 345
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
+E N + +L+ YA+ E ++ V +K I
Sbjct: 346 VEKNVIAW-NVLIAAYAQNGEEEEAIRLFVQLKRDSI 381
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 35 SGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD----IDVYIGSALVDMYAKCG 90
S ++ + + T++S A LG L R + FD + + +AL+ YA+ G
Sbjct: 46 SPVAGETFLLNTLVSTYARLGRLREARRV--------FDGIPLRNTFSYNALLSAYARLG 97
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH--EALAMFDRMIYENVEPNGVTFISV 148
D + +F + + + +N+++ LA HG H +AL M ++ N +F S
Sbjct: 98 RPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASA 157
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLLEDALELIRSSKFQ 207
LSAC + G + + S + H G +VD+ +K DA + + +
Sbjct: 158 LSACAAEKDLRTGEQ--VHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMP-E 214
Query: 208 PNAVIWGALL 217
N V W +L+
Sbjct: 215 RNVVSWNSLI 224
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 211/331 (63%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +DI+SW TMI YS+N EAL F EM+ PD +TMA +L AC L AL++G
Sbjct: 816 IPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIG 874
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++ G+ ++++ +AL+DMY KCGSL + L+F + EK+L W +I G +H
Sbjct: 875 RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMH 934
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EA+A F +M ++P+ +TF S+L AC+H+GL+ EG F SM ++ P++EH
Sbjct: 935 GLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEH 994
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL++ G L A LI + +P+A IWGALL GC++H ++E+A + LE
Sbjct: 995 YACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELE 1054
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+GY LL N+YAE +W EV K+R + + G+ K+ PG SWIE++ K F ++D +
Sbjct: 1055 PDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGL-KKSPGCSWIEVQGKFTTFVSADTA 1113
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + I+S L+ L ++K + P++ L
Sbjct: 1114 HPQAKSIFSLLNNLRIKMKNEGHSPKMRYAL 1144
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 139/253 (54%), Gaps = 7/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SWT++I Y + + +A+ F EM++ G+SPD +M +VL ACA +LD G
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H Y+ + + + + +AL+DMYAKCGS++ + LVF ++ K++ WN++I G + +
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+EAL +F M E+ P+G+T +L AC +E GR + GYS E+
Sbjct: 835 SLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS--SELH 891
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH--RNLEIAHIAVNELM 237
++D+ K G L A L+ + + + W ++ GC +H N IA +
Sbjct: 892 VANALIDMYVKCGSLVHA-RLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIA 950
Query: 238 ILEPNNSGYCTLL 250
++P+ + ++L
Sbjct: 951 GIKPDEITFTSIL 963
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 12/221 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW +MI+ N AL+ F +M + D T+ ++ACA++G+L LGR +
Sbjct: 617 RDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRAL 676
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ F +V + L+DMY+KCG+L+ ++ F K+ +K + W S+I G
Sbjct: 677 HGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLY 736
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-----RFLSMTCGYSITPEV 178
+A+ +F M + V P+ + SVL AC +++GR R +M ++
Sbjct: 737 DDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS--- 793
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +E+A L+ S + V W ++GG
Sbjct: 794 ---NALMDMYAKCGSMEEAY-LVFSQIPVKDIVSWNTMIGG 830
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 2/209 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W M++ Y++ +RE++ F +M+ GI+ + T + +L A LG + + IH V
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF + ++L+ Y K G +D + +F +L ++++ WNS+I G ++GF+H AL
Sbjct: 581 KLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALE 640
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
F +M+ V + T ++ ++AC + G + G R + EV ++D+
Sbjct: 641 FFVQMLILRVGVDLATLVNSVAACANVGSLSLG-RALHGQGVKACFSREVMFNNTLLDMY 699
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALL 217
SK G L DA++ Q V W +L+
Sbjct: 700 SKCGNLNDAIQAFEKMG-QKTVVSWTSLI 727
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 13/219 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
T I + + R A++ + S + D +++L CA L G+ +H +
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSEL--DLNAYSSILQLCAEHKCLQEGKMVHSVISS 479
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKNLFCWNSIIEGLAVHGFAHEALA 128
G I+ +G+ LV MY CG+L +F L + +F WN ++ A G E++
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
+F +M + N TF +L G V E +R C Y + Y +V+ L
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIH---GCVYKLG--FGSYNTVVNSL 594
Query: 189 ----SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
K+G ++ A +L + V W +++ GC ++
Sbjct: 595 IATYFKSGEVDSAHKLF-DELGDRDVVSWNSMISGCVMN 632
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 218/323 (67%), Gaps = 2/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT+M++ +++ F+EAL F +M+ + I D++T+ VLSACA GALD G+ I
Sbjct: 277 KDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYI 336
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
HL + + + D+ + +ALVDMYAKCGS+D +L VF ++R +N+F WN++I GLA+HG
Sbjct: 337 HLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHG 396
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+++FD+M ++ + P+ VTFI++L AC+HAGLV+EG F +M + I P +EHYGC
Sbjct: 397 EDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGC 456
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL +A ++DAL I + + N+V+W LLG C+ + ++A ++ LEP++
Sbjct: 457 VVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDS 516
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G +L N+YA VS+W K+R MK GIEK PG SWIE+ ++QF A D+SH
Sbjct: 517 CGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKT-PGCSWIELNGMIHQFVAGDRSHLQ 575
Query: 304 SDEIYSSLSKLDEQLKL-ASYVP 325
+++IY+ + ++ ++ L +VP
Sbjct: 576 TEQIYAMIEEMTRRVNLDGGHVP 598
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 134/227 (59%), Gaps = 3/227 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+++W MI + +A D +EM K + PD+VTM +++ ACA LG L+ G+
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y ++G D ++ + +A++DMY KC ++ + VF ++REK++ W S++ GLA G+
Sbjct: 235 LHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 294
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EALA+F +M +E + +T + VLSAC G +++G+ L + + I ++
Sbjct: 295 FQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLID-KFEINCDLVLET 353
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+VD+ +K G ++ AL++ R + + N W AL+GG +H + E A
Sbjct: 354 ALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGEDA 399
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 5/221 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D TMI Y++++ EA+ + M G+ D T VL+ACA LGA+ LG
Sbjct: 71 MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLG 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H V++ GF D+++ +AL+ Y CGS + VF + +++ WN +I
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190
Query: 121 GFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEV 178
G + +A + D M +N+ P+ VT +S++ AC G +E G +FL S + + +
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG--KFLHSYSKELGLDENL 248
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K +E A E+ + + + + W ++L G
Sbjct: 249 RVNNAILDMYCKCDDIESAQEVFNRIR-EKDVLSWTSMLSG 288
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +W +I + + +A+ F++M++ + PD VT +L AC+H G +D G
Sbjct: 375 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEG 434
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL 96
+ M+ F I+ + +VD+ + +D +L
Sbjct: 435 LAM-FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 471
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFC 109
H ++ ++ H +++ + S L+ A G L+ + +F +++ + F
Sbjct: 19 THCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFI 78
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFL 166
N++I G A +EA++++ M+ V + T+ VL+AC G V+ GRR L
Sbjct: 79 CNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVL 138
Query: 167 SMTCG---YSITPEVEHY------GCMVDLLSKA------------------GLLEDALE 199
G + I ++ Y GC D+ ++ GL E A +
Sbjct: 139 KNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFD 198
Query: 200 LI----RSSKFQPNAVIWGALLGGCKLHRNLE 227
L+ + +P+ V +L+ C NLE
Sbjct: 199 LLDEMTKLDNLRPDEVTMVSLVPACAQLGNLE 230
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 208/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++ SW MI + ++ + EAL F EM+ GI D+VTMA++L AC HLGAL+LG+ +
Sbjct: 251 KNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWL 310
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + D+DV +G+ALVDMYAKCGS++ ++ VF ++ EK++ W ++I GLA+ G A
Sbjct: 311 HAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQA 370
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL FD M + V+P+ +TF+ VL+AC+HAG V+EG F SM+ Y I P +EHYG
Sbjct: 371 ENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGG 430
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VD+L +AG + +A ELI+S P+ + G LLG C++H NLE A A +L+ ++P +
Sbjct: 431 LVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYH 490
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N+Y +W E + R M E G+ K PG S IE+ V++F D SH
Sbjct: 491 SGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKP-PGCSQIEVHGVVHEFVKGDSSHRQ 549
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S EI L + +LK A YVP+ +L
Sbjct: 550 SSEINEMLEDMISKLKNAGYVPDKSEVL 577
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M + ++SW TMI ++Q Q EA+ F+ M K+ + P++VT+ VL+ACA L +
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ IH Y+ + GF V + + L+D+Y KCG + + +F K +EKNLF WN +I G
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
EAL +F M + ++ + VT S+L ACTH G +E G + + I +V
Sbjct: 266 DSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVA 324
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G +E A+++ + + + W AL+ G
Sbjct: 325 LGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALILG 363
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 33/253 (13%)
Query: 3 ARDIISWTTMITCYSQNKQFR---------EALDAFNEMKNSGISPDQVTMATVLSACAH 53
AR + S T Y+ N R EAL + EM G+ PD+ T ++ +C +
Sbjct: 41 ARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRN 100
Query: 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
G++IH + ++GF D Y + L++MY+ CG L + VF K+ +K + W ++
Sbjct: 101 SSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATM 157
Query: 114 IEGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172
I A +EA+ +FDRM+ ENV+PN VT ++VL+AC R R L+M
Sbjct: 158 IGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTAC--------ARARDLAMV--K 207
Query: 173 SITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
I ++ +G ++D+ K G ++ A +L ++ + N W ++ G
Sbjct: 208 RIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQ-EKNLFSWNIMINGHVED 266
Query: 224 RNLEIAHIAVNEL 236
N E A + E+
Sbjct: 267 SNYEEALLLFREM 279
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++WT +I + Q AL F+EM G+ PD +T VL+AC+H G +D G
Sbjct: 349 MPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEG 408
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSL 92
H M + I I LVD+ + G +
Sbjct: 409 IS-HFNSMSDTYGIQPTIEHYGGLVDILGRAGRI 441
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH +++ G D + S +V + + GSL + LVF ++ + NSII G
Sbjct: 5 KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
EAL + M+ + + P+ TF S+ +C ++ EG++ T +
Sbjct: 65 DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHST-KLGFASDT 120
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI-WGALLG 218
++++ S G L A ++ K + V+ W ++G
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVF--DKMEDKTVVSWATMIG 159
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 206/327 (62%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISWT+++T YSQ ++ +A++ F+ M+ GI+P+Q T ++VL +CA+L L+ G
Sbjct: 437 MEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYG 496
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + ++G D+D I SALVDMYAKCG L + VF ++ + W +II G A H
Sbjct: 497 QQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQH 556
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM+ VEPN VTF+ VL AC+H GLVEEG + F M Y + PE+EH
Sbjct: 557 GIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEH 616
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLLS+ G L DA+E I +PN ++W LLG C++H N+E+ +A +++ +
Sbjct: 617 YACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFK 676
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NS LL N Y E + + +R MKE G++K PG SWI + +++F A D+
Sbjct: 677 AENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKE-PGCSWISVNGTLHKFYAGDQQ 735
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP D+IY+ L +L +L VP+L
Sbjct: 736 HPEKDKIYAKLEELKLKLISLDDVPDL 762
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ SWT +I ++N F + + F EM++ GI PDQ + +L C L +++LG
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ GF ++ +AL++MYAK ++ S VF + E N+ WN++I G +
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A +F RM+ E V P+ TFI V A V + + GY++ V+
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE-----VSGYALELGVDS 305
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSS----KFQP--NAVIWGALLGG 219
++D+ SK G L++A + S +F NA+I G L G
Sbjct: 306 NTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 5/246 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI+ Y ++ +AL+ F +M + I D T +V +A A L L LG+++H +
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 69 QIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G +++ V I +A+ + YAKCGSL+ VF ++ +++L W S++ + +A+
Sbjct: 403 KSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAI 462
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+F M E + PN TF SVL +C + L+E G++ + C + + +VD+
Sbjct: 463 EIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH-GIICKVGLDMDKCIESALVDM 521
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL--EPNNSG 245
+K G L DA ++ + V W A++ G H ++ A ++ L EPN
Sbjct: 522 YAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVT 580
Query: 246 YCTLLL 251
+ +L
Sbjct: 581 FLCVLF 586
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 4/178 (2%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFK 101
+ +L C L + +H ++++ F + + + + Y+KC +D + +F +
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ ++N F W +I GLA +G + F M + + P+ + +L C +E G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ T ++++ +K +ED+ ++ + + N V W A++ G
Sbjct: 191 NMVHAQIVI-RGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT-EVNVVSWNAMITG 246
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/288 (46%), Positives = 192/288 (66%), Gaps = 1/288 (0%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
MA +L ACA + AL+ G+++H +++IGF++DV + + LVDMY KCG ++ + VF KL
Sbjct: 1 MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
E ++ WN++I GLA HG EA+ +F++M+ V+PN +TF+ VLS C+HAGLV+EGR
Sbjct: 61 EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
F SMT + I+P+ EHY CMVDL +AG L++AL I +PNA +WG+LLG C++H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180
Query: 224 RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS 283
N+E+A AV +L+ L P N G LL N+YA RW + K+R MK+ ++K PG S
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKE-PGCS 239
Query: 284 WIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
WIE++ KV+ F D SHP +EIY +L L Q+K A Y+P +L
Sbjct: 240 WIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVL 287
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE-I 63
D+ SW MI+ +Q+ +EA+ F +M +G+ P+Q+T VLS C+H G +D GR
Sbjct: 63 DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYF 122
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHG- 121
G S +VD++ + G LD +L ++ E N W S++ VHG
Sbjct: 123 DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182
Query: 122 --FAHEALAMFDRMIYEN 137
A A+ + EN
Sbjct: 183 IELAERAVEQLIELTPEN 200
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 209/329 (63%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D ++W +I Y QN +EA+ +F++M+ P+ VT +VL A A+L A G
Sbjct: 595 TKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 654
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++Q+GF + +G++L+DMYAKCG L S +F ++ K+ WN+++ G AVHG
Sbjct: 655 FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGH 714
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A+A+F M V+ + V+F+SVLSAC H GLVEEGR+ F SM+ Y I P++EHY
Sbjct: 715 GDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYA 774
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AGL ++ L I+ +P+A +WGALLG C++H N+++ +A++ L+ LEP
Sbjct: 775 CMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPR 834
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N + +L ++YA+ RWA+ K R M +LG+ K+ PG SW+E++ KV+ F DKSHP
Sbjct: 835 NPAHFVVLSSIYAQSGRWADAGKARSKMNDLGL-KKTPGCSWVELKNKVHAFRVGDKSHP 893
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ ++ + L E+++ YVP+ +L
Sbjct: 894 QLESMHLLWNTLLEKMEKIGYVPDRSCVL 922
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 7/303 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD+++W+ +I Q EAL F EM+N + P++VT+ ++L ACA L L LG
Sbjct: 390 LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + ++ D D+ G+ALV MYAKCG +L F ++ +++ WNS+I G A
Sbjct: 450 KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQI 509
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVE 179
G + A+ MF ++ + P+ T + V+ AC +++G L + G+ V+
Sbjct: 510 GDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVK 569
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC--KLHRNLEIAHIAVNELM 237
+ ++D+ +K G L A L + F + V W ++ H I+ L
Sbjct: 570 N--ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE 627
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG-IEKRCPGSSWIEMERKVYQFAA 296
PN+ + + +L A ++ + E + ++G + G+S I+M K Q
Sbjct: 628 NFHPNSVTFVS-VLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXY 686
Query: 297 SDK 299
S+K
Sbjct: 687 SEK 689
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW TM+ Y+ N F E L+ F++MK + ++V+ + A A L+ G
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH +Q D D+ + + L+ MYAKCG +++ +F+ L+ ++L W++II L
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EAL++F M + ++PN VT +S+L AC L++ G + T + ++
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLST 467
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + +K G AL + + V W +L+ G
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 14/222 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL-- 59
P+R I W +MI Y+++KQ+ EAL+ + M G+ PD+ T VL AC GAL+L
Sbjct: 92 PSR--ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT--GALNLQE 147
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G H + + G + DV+IG+ LVDMY+K G L R+ VF K+ ++++ WN++I GL+
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
EA+ F M VEP+ V+ +++ +E R GY +
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRS-----IHGYVFRRDFS 262
Query: 180 H--YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL SK G + D + + V WG ++ G
Sbjct: 263 SAVSNGLIDLYSKCGDV-DVARRVFDQMVDQDDVSWGTMMAG 303
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 35/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W MI SQ++ EA+D F M+ G+ P V++ + L ++L
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELC 249
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV + F V G L+D+Y+KCG +D + VF ++ +++ W +++ G A +
Sbjct: 250 RSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN 307
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------------- 163
G E L +FD+M NV N V+ +S A +E+G+
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVA 367
Query: 164 ---RFLSMTCGYSITPEVEHYG----------CMVDLLSKAGLLEDALEL---IRSSKFQ 207
+ CG + + +G ++ L + G E+AL L +++ K +
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427
Query: 208 PNAVIWGALLGGC 220
PN V ++L C
Sbjct: 428 PNRVTLMSILPAC 440
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+LS+C HL L +IH ++ GF I + L+++Y+ D + VF +
Sbjct: 38 LLSSCKHLNPL---LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPS 93
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
WNS+I +EAL M+ M+ + +EP+ TF VL ACT A ++EG F
Sbjct: 94 RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG-VWFH 152
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V +VD+ SK G L+ A E+ + + V W A++ G
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW M++ Y+ + A+ F+ M+ S + D V+ +VLSAC H G ++ G
Sbjct: 694 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEG 753
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEG 116
R+I + M + I D+ + +VD+ + G D + L F K+ E + W +++
Sbjct: 754 RKI-FHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET-LGFIKVMPVEPDAGVWGALLGS 811
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+H D ++ +EP VLS+
Sbjct: 812 CRMHSNVKLGEVALDHLV--KLEPRNPAHFVVLSS 844
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW MI Y Q+ + EA F+ M+ + D+ A++LSAC LGAL+ G
Sbjct: 212 MPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 271
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + G ++D + + ++DMY KCG L+++ VF +L +K + WN +I GLA+H
Sbjct: 272 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 331
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +F M E V P+G+TF++VLSAC H+GLVEEG+ F MT + P +EH
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+GCMVDLL +AGLLE+A +LI P+A + GAL+G C++H N E+ +++ LE
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL N+YA RW +V K+R M + G+ K+ PG S IE E V +F A ++
Sbjct: 452 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV-KKAPGFSMIESESGVDEFIAGGRA 510
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY+ L ++ E ++ YVP+ + +L
Sbjct: 511 HPQAKEIYAKLDEILETIRSIGYVPDTDGVL 541
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 41/264 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + T+ Y + + R + ++ M + +SP++ T ++ AC A++ G
Sbjct: 80 IPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEG 139
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +V++ GF D + + L+ MY SL+++ VF + ++++ W S+I G +
Sbjct: 140 KQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQW 199
Query: 121 GFA-------------------------------HEALAMFDRMIYENVEPNGVTFISVL 149
GF HEA A+FDRM ENV + S+L
Sbjct: 200 GFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASML 259
Query: 150 SACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
SACT G +E+G+ GY I + + ++D+ K G LE A E+
Sbjct: 260 SACTGLGALEQGK-----WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP 314
Query: 206 FQPNAVIWGALLGGCKLHRNLEIA 229
Q W ++GG +H E A
Sbjct: 315 -QKGISSWNCMIGGLAMHGKGEAA 337
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREK 105
L +C+ + L ++ H ++++G D ++ A K G L+ +L VF K+
Sbjct: 27 LDSCSTMAEL---KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHP 83
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-- 163
+ + +N+I G A + M+ RM++++V PN T+ ++ AC +EEG++
Sbjct: 84 DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIH 143
Query: 164 ----RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+F G+S+ + Y V+ S LE A + + Q + V W +L+ G
Sbjct: 144 AHVLKFGFGADGFSLNNLIHMY---VNFQS----LEQARRVFDNMP-QRDVVSWTSLITG 195
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 214/334 (64%), Gaps = 7/334 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P++D+I W M+ Y+Q+ + EAL F M SG+ PD+V++ LSA A LG + G
Sbjct: 219 LPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESG 278
Query: 61 REIHLYVMQIG---FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIE 115
R +H +V ++ +G+AL+DMY KCGSL+ ++ VF L ++++ WN+++
Sbjct: 279 RWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVN 338
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G A+HG + EALA F ++ + + P +TFI VL+AC+H+GLV+EGR F SM Y I
Sbjct: 339 GYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIE 398
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P+VEHYGCMVDLL +AG +E+A EL++S ++ +P+AV+W +LL C+LH+N+E+ +
Sbjct: 399 PKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIAD 458
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L+ NSG LL NMYA W EV ++R M+ GI+K PG S +E+ R+V +F
Sbjct: 459 HLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKE-PGCSAVEVGRRVVEF 517
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPELE 328
A D+SHP + EIY+ L +++ + +VP E
Sbjct: 518 VAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTE 551
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 39/271 (14%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDLG 60
P + +T+ I +S AL +EM S G+ P T++ L AC G L +G
Sbjct: 89 PDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVG 145
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMY--------------------------------AK 88
R +H Y +++ + Y+ +AL+ MY AK
Sbjct: 146 RALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAK 205
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
G LD + +F L K+L CWN++++G HG EAL +F RM+ VEP+ V+ +
Sbjct: 206 MGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLA 265
Query: 149 LSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SK 205
LSA G E GR F++ + + ++D+ K G LEDA+ +
Sbjct: 266 LSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGA 325
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ V W A++ G +H + A A +L
Sbjct: 326 GDRDIVAWNAMVNGYAMHGHSREALAAFGQL 356
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
A +L+ CA + E+H ++ G D D + L YA G LD ++ + + +
Sbjct: 34 AALLAGCA---SARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPD 90
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSAC 152
+ S I + G H ALA+ M+ + + P T + L AC
Sbjct: 91 PTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC 139
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 210/319 (65%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ W ++ Y QNKQ +EA+ F+EM+ S + P+++TM +LSAC+ LGAL++G
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMG 375
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + + V +G++LVDMYAKCG++ +++ VF ++ +N W S+I GLA H
Sbjct: 376 MWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANH 435
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA+ F RMI ++P+ +TFI VLSAC HAGLVE GR+ F M Y + +++H
Sbjct: 436 GHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKH 495
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++A +L+ + P+AV+WGAL C++H N+ + A +L+ L+
Sbjct: 496 YSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELD 555
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL NMYAE + + K+RV M+ LG+EK PG S IE+ V++F DKS
Sbjct: 556 PSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEK-VPGCSCIELNGVVHEFIVKDKS 614
Query: 301 HPASDEIYSSLSKLDEQLK 319
H ++ IY L ++ Q++
Sbjct: 615 HLDTNAIYDCLHEITLQMR 633
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 53/264 (20%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDL 59
P RD++SW T+I Y ++ REAL+ F + G + PD+VT+ +S CA +G L+L
Sbjct: 183 PVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLEL 242
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD-------------------------- 93
G+ +H +V G V + +A++DMY KCGSL+
Sbjct: 243 GKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHAR 302
Query: 94 -----RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+ ++F ++ E+++F WN+++ G + EA+A+F M V+PN +T +++
Sbjct: 303 LGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNL 362
Query: 149 LSACTHAGLVEEG---------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
LSAC+ G +E G + LS+ G S +VD+ +K G ++ A+
Sbjct: 363 LSACSQLGALEMGMWVHHYIDRHKLHLSVALGTS----------LVDMYAKCGNIKKAIC 412
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ Q NA+ W +++ G H
Sbjct: 413 VFNEIPVQ-NALTWTSMICGLANH 435
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 5/215 (2%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLY 66
++ + C Q+ R L + + +SG + PD +T ++ ACA L G + +
Sbjct: 87 AFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGH 146
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V ++GF DV++ +A + ++ G + + +F + +++ WN++I G G EA
Sbjct: 147 VQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREA 206
Query: 127 LAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
L +F R+ + V P+ VT I +S C G +E G +R + V +
Sbjct: 207 LELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELG-KRLHEFVDNKGVRCTVRLMNAV 265
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+D+ K G LE A + + AV W ++ G
Sbjct: 266 MDMYVKCGSLELANSVFERISNR-TAVSWTTMIVG 299
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 203/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R +SW ++I+ +S KQ AL F+ M G+ PD T ATVL CA+L ++LG++I
Sbjct: 537 RTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQI 596
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ DVYI S +VDMY+KCG++ S ++F K +++ W+++I A HG
Sbjct: 597 HGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLG 656
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F+ M +NV+PN FISVL AC H G V++G F M Y + P++EHY C
Sbjct: 657 EDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSC 716
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++G + +ALELI S F+ + VIW LLG C+L N+E+A A N L+ L+P +
Sbjct: 717 MVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQD 776
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S LL N+YA W EV KIR MK ++K PG SWI++ +V+ F DK+HP
Sbjct: 777 SSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKE-PGCSWIQVRDEVHAFLVGDKAHPR 835
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S+EIY L +++K YVPE++ L
Sbjct: 836 SEEIYQQTHLLVDEMKWDGYVPEIDGFL 863
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 128/252 (50%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW +I + QN+ E L F M S + PD T +V+ ACA AL+ G
Sbjct: 433 MEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYG 492
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H V++ G +D ++GSA++DMY KCG L + + +L E+ WNSII G +
Sbjct: 493 MEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSE 552
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
AL+ F RM+ V P+ T+ +VL C + VE G ++ + +V
Sbjct: 553 KQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELG-KQIHGQILKLQLHSDVYI 611
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+VD+ SK G ++D+ + + + + V W A++ H E A E+ +
Sbjct: 612 ASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQN 670
Query: 239 LEPNNSGYCTLL 250
++PN++ + ++L
Sbjct: 671 VKPNHTIFISVL 682
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 16/248 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M++CY QN R++++ F +M+ I D T A VL AC + LG
Sbjct: 130 MPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLG 189
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +Q+GFD DV G+ALVDMY+ C LD + +F ++ E+N CW+++I G +
Sbjct: 190 LQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRN 249
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF---LSMTCGYSITPE 177
E L ++ M+ E + + TF S +C E G + L GY
Sbjct: 250 DRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVG 309
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRS----SKFQPNAVIWG-----ALLGGCKLHRNLEI 228
+D+ +K + DA ++ + ++ NA+I G +L ++ R+L+
Sbjct: 310 T----ATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQK 365
Query: 229 AHIAVNEL 236
+++ +E+
Sbjct: 366 SYLDFDEI 373
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 4/228 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ + W+ +I Y +N +F E L + M + G+ Q T A+ +CA L A +LG
Sbjct: 231 MPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELG 290
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H Y ++ F D +G+A +DMYAKC + + VF N++I G A
Sbjct: 291 TQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQ 350
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEVE 179
EAL +F + ++ + ++ L+AC+ G +E + L++ CG V
Sbjct: 351 DQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVA 410
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ ++D+ +K G L +A + + + +AV W A++ + + ++E
Sbjct: 411 N--TILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAAHEQNEHVE 455
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 16/256 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R S +I Y++ Q EAL+ F ++ S + D+++++ L+AC+ + G
Sbjct: 335 PTRQ--SHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGI 392
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H ++ G D ++ + + ++DMYAKCG+L + L+F + K+ WN+II +
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNE 452
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-----HAGLVEEGRRRFLSMTCGYSITP 176
E LA+F M+ +EP+ TF SV+ AC + G+ GR M + +
Sbjct: 453 HVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGS 512
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ +D+ K G+L +A E I + V W +++ G + E A + +
Sbjct: 513 AI------IDMYCKCGMLVEA-EKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRM 565
Query: 237 MILE--PNNSGYCTLL 250
+ + P+N Y T+L
Sbjct: 566 LQVGVIPDNFTYATVL 581
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 40/227 (17%)
Query: 28 AFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86
A + + ++ ++P ++T + + C++L A++ G++ H + GF V++ + L+ Y
Sbjct: 24 AIHSISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFY 83
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA---------------------------- 118
KC +L+ + VF K+ ++++ WN++I G A
Sbjct: 84 CKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLS 143
Query: 119 ---VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG---RRRFLSMTCGY 172
+GF +++ +F +M ++ + TF VL ACT G+ + G + L++ G+
Sbjct: 144 CYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACT--GIEDYGLGLQVHCLAIQMGF 201
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V +VD+ S L+ A + + N+V W A++ G
Sbjct: 202 D--SDVVTGTALVDMYSTCKKLDHAFNIFCEMP-ERNSVCWSAVIAG 245
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG- 60
P RD ++W+ MI Y+ + +A+ F EM+ + P+ +VL ACAH+G +D G
Sbjct: 636 PKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGL 695
Query: 61 ---REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
RE+ + G D + S +VD+ + G ++ +L
Sbjct: 696 HYFREMRSHY---GLDPQMEHYSCMVDLLGRSGQVNEAL 731
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 215/342 (62%), Gaps = 17/342 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++I+W +I Y+QN + EA+ F ++K I P T VL+AC ++ L LG
Sbjct: 103 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLG 162
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
++ H++V++ GF + DV++G++LVDMY K GS+D VF ++ ++ WN++I
Sbjct: 163 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 222
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G A +AL +F+RM+ N P+ VT I VLSAC H+GLV+EGRR F MT + I
Sbjct: 223 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGI 282
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
TP +HY CMVDLL +AG L++A ELI+ +P++V+W +LLG C+LH+N+E+
Sbjct: 283 TPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAG 342
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L L+P NSG LL NMYAE+ +WA+V ++R +MK+ G+ K+ PG SWIE+ K+ F
Sbjct: 343 RLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ-PGCSWIEIGSKMNVF 401
Query: 295 AASDKSHPASDEIYSSLSKLDEQL----------KLASYVPE 326
A D HP +EI+S+L + ++ L +Y PE
Sbjct: 402 LARDNRHPCRNEIHSTLRIIQMEMCRTSIDGIDDDLMNYCPE 443
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 65/337 (19%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLY-VMQIGFDIDVYIGSALVDMYAKCG 90
M +G PD+VT+++V+SACA L A GR++H + V + D+ + +ALVDMYAKCG
Sbjct: 1 MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60
Query: 91 -------------------------------SLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++ + +VF ++ EKN+ WN +I A
Sbjct: 61 RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITP 176
+G EA+ +F ++ +++ P T+ +VL+AC + +++ G++ L + P
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180
Query: 177 EVEHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
E + + +VD+ K G ++D ++ + N V W A++ G + + A + +
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN-VSWNAMIVGYAQNGRAKDA-LHLF 238
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
E M+ N T+ +G+ C S ++ R+ + F
Sbjct: 239 ERMLCSNENPDSVTM-----------------------IGVLSACGHSGLVDEGRRHFHF 275
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D S + Y+ + L L A ++ E E ++
Sbjct: 276 MTEDHGITPSRDHYTCMVDL---LGRAGHLKEAEELI 309
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 215/334 (64%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ ISW +M++ Y+QN + +AL FN+M+ S P+ VT ++SAC++LG+ LG
Sbjct: 263 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
R++H +V+ DID + +A++DMY KCG LD ++ +F +L E+++ WN +I G
Sbjct: 323 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 382
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EAL +F RM E VEPN +TF S+LSAC+HAGL++EGR+ F MT S+ PE+
Sbjct: 383 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEM 441
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVD+L +AG L +A LI+ +P+ +WGALL C++H N E+ IA N L
Sbjct: 442 KHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQ 501
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS-SWIEMERKVYQFAAS 297
LEP ++GY L+ N+YA ++W EV +R MK G++K P + S IE +V+ F +
Sbjct: 502 LEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK--PAAFSVIEFGTEVHGFHTA 559
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+S P E+Y + L ++K+ YVP+L +L
Sbjct: 560 DQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVL 593
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 120/253 (47%), Gaps = 35/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ WT MIT Y Q ++ +AL F +M+ G D++T +V SA LG G
Sbjct: 193 MLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD---G 249
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R ++ R+ LVF ++ E+N WNS++ G +
Sbjct: 250 RM----------------------------AISRARLVFDRMEERNGISWNSMLSGYTQN 281
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL++F++M +PN VT + ++SAC++ G G R+ + + +
Sbjct: 282 GRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG-RKLHNFVISSKMDIDTTL 340
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKF-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++D+ K G L+ A+E+ + + + + W L+ G +H + + A + + +
Sbjct: 341 RNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE 400
Query: 239 -LEPNNSGYCTLL 250
+EPN+ + ++L
Sbjct: 401 GVEPNDITFTSIL 413
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDLGREIHLYVM 68
TM+ Y+ + EA+D + M+ G+ + T VL CA LGA+ G +H V+
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVV 159
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF D+++ +ALVDMYAKCG + + VF ++ +++ CW ++I +AL
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAG----LVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+F +M E + +T ISV SA G + R F M I+ + M
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGIS-----WNSM 274
Query: 185 VDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
+ ++ G DAL L +++S+ PN V ++ C
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSAC 313
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 208/328 (63%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++W++M+ Y QNK + EAL + + + +Q T+++V+ AC++L AL G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + GF +V++ S+ VDMYAKCGSL S ++F +++EKNL WN+II G A H
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E + +F++M + + PN VTF S+LS C H GLVEEGRR F M Y ++P V H
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 402
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L +AGLL +A ELI+S F P A IWG+LL C++++NLE+A +A +L LE
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 462
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W E+ K R +++ + K+ G SWI+++ KV+ F+ +
Sbjct: 463 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDV-KKVRGKSWIDIKDKVHTFSVGESG 521
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP EI S+L L + + Y P +E
Sbjct: 522 HPRIREICSTLDNLVIKFRKFGYKPSVE 549
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDL 59
M R ++SW TMI Y++N+ EALD F EM+N G + T+++VLSAC + AL+
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H ++ D+++Y+G+AL+D+YAKCG + ++ VF +++K+ W+S++ G
Sbjct: 182 -KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQ 240
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ EAL ++ R ++E N T SV+ AC++ + EG ++ ++ C V
Sbjct: 241 NKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVF 299
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
VD+ +K G L ++ +I S + N +W ++ G H + I ++
Sbjct: 300 VASSAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQD 358
Query: 239 -LEPNNSGYCTLL 250
+ PN + +LL
Sbjct: 359 GMHPNEVTFSSLL 371
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L CA GA+ + H +++I + DV + + L++ Y+KCG ++ + VF + E++
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-THAGLVEEGRRRF 165
L WN++I + EAL +F M E + + T SVLSAC + +E +
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 166 LSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR 224
LS+ TC I + ++DL +K G+++DA+++ S + ++V W +++ G ++
Sbjct: 187 LSVKTC---IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQNK 242
Query: 225 NLEIA 229
N E A
Sbjct: 243 NYEEA 247
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 199/295 (67%), Gaps = 1/295 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISWT+MIT YSQ QF +A+ F EM + + PD+VT+A+VLSACAHLG LD+G
Sbjct: 309 MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + G D+Y+G++L+DMY KCG ++++L VF ++++K+ W S+I GLAV+
Sbjct: 369 WAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA+ AL +F +M+ E V+P TF+ +L AC HAGLV +G F SM + + P ++H
Sbjct: 429 GFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKH 488
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS++G ++ A E I+ P+ V+W LL CKLH N+ +A IA L+ L+
Sbjct: 489 YGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELD 548
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
P +SG LL N YA V RW + K+R M++ ++K GSS IE++ V ++
Sbjct: 549 PCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKP-SGSSSIEVDGMVSNYS 602
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 128/257 (49%), Gaps = 47/257 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW T+I YSQ +++E L F+ M + I D VTM ++ AC+HLG +
Sbjct: 177 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFA 236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
+ Y+ + +IDVY+G+ L+DMY + + + VF ++RE+N+ WN+++ G A
Sbjct: 237 DSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKV 296
Query: 119 ------------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVL 149
+ G++ +A+ +F M+ V+P+ VT SVL
Sbjct: 297 GNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVL 356
Query: 150 SACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
SAC H G ++ G RR + + ++ ++D+ K G++E ALE+
Sbjct: 357 SACAHLGKLDVGWAVHHYIRR--------HGVQADIYVGNSLIDMYCKCGMVEKALEVFH 408
Query: 203 SSKFQPNAVIWGALLGG 219
K ++V W +++ G
Sbjct: 409 RMK-DKDSVSWTSVISG 424
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 133/265 (50%), Gaps = 13/265 (4%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ W MI SQ+ EA+ + M + GI+ + +T+ + ACA + + GR+IH+
Sbjct: 81 LVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHV 140
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ +++GF+ +++ +AL+ MYA CG L + +F + +++L WN++I G + + E
Sbjct: 141 HALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKE 200
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHY 181
L +FD M N++ + VT + ++ AC+H G E F Y ++ +V
Sbjct: 201 VLRLFDAMTAANIKADAVTMVKIILACSHLGDWE-----FADSMVKYIKENNLEIDVYLG 255
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
++D+ + L E A + + + N V W AL+ G NL A + +
Sbjct: 256 NTLIDMYGRRSLAELAQGVFDRMR-ERNIVSWNALVMGHAKVGNLTAARKLFDN---MPK 311
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKI 266
+ T ++ Y++ S++++ K+
Sbjct: 312 RDVISWTSMITGYSQASQFSDAVKL 336
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYA-KCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
D +E+H ++++ D ++ S ++ Y+ +L ++ LVF ++ L WN +I G
Sbjct: 31 DTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRG 90
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
L+ EA+ M+ RM ++ + N +T I + AC + GR+
Sbjct: 91 LSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRK 137
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 213/344 (61%), Gaps = 14/344 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM------------KNSGISPDQVTMATVL 48
MP R+++SW+TM++ Y + A F++M K + + D + ++L
Sbjct: 570 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSIL 629
Query: 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNL 107
+ACA G+L LG+ IH YV + ++ +AL+DM+ KCG ++R+ VF + +K+
Sbjct: 630 AACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDS 689
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
WNSII G A+HG +AL +F +M + P+ VT I+VLSACTH G V+EGRR F +
Sbjct: 690 VSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSN 749
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
M Y I P++EHYGCM+DLL + GL+++A++LI+S ++PN VIWG+LL C+LH+N+E
Sbjct: 750 MERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVE 809
Query: 228 IAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
A IAVNEL L+P+N+G +L N+YAE +W+++ K R+ MK G +K GSSW+E+
Sbjct: 810 YAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTA-GSSWVEL 868
Query: 288 ERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
++F D+ H SD+I + +L +K VP +L
Sbjct: 869 NETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHVGCVPAGHELL 912
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D TM+ Y+ R+AL AF+ M D T + ++ A + G + R
Sbjct: 413 PHADAFLANTMLRAYALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAGVAPV-R 467
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H +V+++G D ++G+AL+D Y+K G + VF ++ E+++ WN+ + + G
Sbjct: 468 AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREG 527
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VE 179
A +FD M E + V++ ++L T AG VE F M PE V
Sbjct: 528 ELAGARKLFDEM----PEKDTVSWNTILDGYTKAGEVEAAFELFQRM-------PERNVV 576
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ MV K G LE A +I N V W
Sbjct: 577 SWSTMVSGYCKKGDLEMA-RVIFDKMPGKNLVTW 609
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 56/237 (23%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T + + + A F+EM D V+ T+L
Sbjct: 508 MPERDVVSWNTAMAAMVREGELAGARKLFDEMPEK----DTVSWNTIL------------ 551
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
D Y K G ++ + +F ++ E+N+ W++++ G
Sbjct: 552 -----------------------DGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKK 588
Query: 121 GFAHEALAMFDRMIYEN------------VEPNGVTFISVLSACTHAGLVEEGRR--RFL 166
G A +FD+M +N VE + +S+L+AC +G + G+R R++
Sbjct: 589 GDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 648
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ ++D+ K G + A + + Q ++V W +++GG +H
Sbjct: 649 RK---RNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMH 702
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 135/295 (45%), Positives = 199/295 (67%), Gaps = 1/295 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISWT+MIT YSQ QF +A+ F EM + + PD+VT+A+VLSACAHLG LD+G
Sbjct: 186 MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG 245
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + G D+Y+G++L+DMY KCG ++++L VF ++++K+ W S+I GLAV+
Sbjct: 246 WAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVN 305
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA+ AL +F +M+ E V+P TF+ +L AC HAGLV +G F SM + + P ++H
Sbjct: 306 GFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKH 365
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS++G ++ A E I+ P+ V+W LL CKLH N+ +A IA L+ L+
Sbjct: 366 YGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELD 425
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
P +SG LL N YA V RW + K+R M++ ++K GSS IE++ V ++
Sbjct: 426 PCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKP-SGSSSIEVDGMVSNYS 479
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 16/226 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW T+I YSQ +++E L F+ M + I D VTM ++ AC+HLG +
Sbjct: 85 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFA 144
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y+ + +IDVY+G+ L+DMY + G+L + +F + ++++ W S+I G +
Sbjct: 145 DSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQA 204
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMTCGYS 173
+A+ +F M+ V+P+ VT SVLSAC H G ++ G RR +
Sbjct: 205 SQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR--------HG 256
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ ++D+ K G++E ALE+ K ++V W +++ G
Sbjct: 257 VQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSWTSVISG 301
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
+S I+P A V++ ++ A + IH++ +++GF+ +++ +AL+ MYA CG L
Sbjct: 21 SSTIAP----AALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLG 76
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F + +++L WN++I G + + E L +FD M N++ + VT + ++ AC+
Sbjct: 77 FAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACS 136
Query: 154 HAG 156
H G
Sbjct: 137 HLG 139
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++S+T +I Y + +Q + L F E++ GI P++ T ++++ ACA+ AL+ G ++
Sbjct: 272 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 331
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H VM+I FD D ++ S LVDMY KCG L++++ F ++ + WNS++ HG
Sbjct: 332 HAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 391
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F+RM+ V+PN +TFIS+L+ C+HAGLVEEG F SM Y + P EHY C
Sbjct: 392 KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 451
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
++DLL +AG L++A E I F+PNA W + LG C++H + E+ +A +L+ LEP N
Sbjct: 452 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 511
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N+YA +W +V +R+ M++ G K+ PG SW+++ K + F A D SHP
Sbjct: 512 SGALVLLSNIYANERQWEDVRSVRMRMRD-GNVKKLPGYSWVDVGYKTHVFGAEDWSHPR 570
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
IY L L +Q+K A YVP +++
Sbjct: 571 KSAIYEKLDTLLDQIKAAGYVPRTDSV 597
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 3/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ SQN +F EA+ F M+ G P Q ++ + ACA LG++++G
Sbjct: 66 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++ G ++++GS L DMY+KCG++ + VF ++ K+ W ++I+G +
Sbjct: 126 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +MI E V + S L AC + GR S+ ++
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFESDIFV 244
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MI 238
+ D+ SKAG +E A + N V + L+ G +E EL
Sbjct: 245 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 304
Query: 239 LEPNNSGYCTLL 250
+EPN + +L+
Sbjct: 305 IEPNEFTFSSLI 316
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 2/198 (1%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D +A V+ A L G+++H ++ G+ ++ + LV+MY+KCG LD +L +F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
+ ++NL W ++I GL+ + EA+ F M P F S + AC G +E
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G ++ + + I E+ + D+ SK G + DA ++ + + V W A++ G
Sbjct: 124 MG-KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181
Query: 220 CKLHRNLEIAHIAVNELM 237
E A +A +++
Sbjct: 182 YSKIGEFEEALLAFKKMI 199
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 205/327 (62%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++S+T +I Y + +Q + L F E++ GI P++ T ++++ ACA+ AL+ G ++
Sbjct: 207 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 266
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H VM+I FD D ++ S LVDMY KCG L++++ F ++ + WNS++ HG
Sbjct: 267 HAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 326
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F+RM+ V+PN +TFIS+L+ C+HAGLVEEG F SM Y + P EHY C
Sbjct: 327 KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 386
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
++DLL +AG L++A E I F+PNA W + LG C++H + E+ +A +L+ LEP N
Sbjct: 387 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 446
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N+YA +W +V +R+ M++ G K+ PG SW+++ K + F A D SHP
Sbjct: 447 SGALVLLSNIYANERQWEDVRSVRMRMRD-GNVKKLPGYSWVDVGYKTHVFGAEDWSHPR 505
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
IY L L +Q+K A YVP +++
Sbjct: 506 KSAIYEKLDTLLDQIKAAGYVPRTDSV 532
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 3/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ SQN +F EA+ F M+ G P Q ++ + ACA LG++++G
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++ G ++++GS L DMY+KCG++ + VF ++ K+ W ++I+G +
Sbjct: 61 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +MI E V + S L AC + GR S+ ++
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFESDIFV 179
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MI 238
+ D+ SKAG +E A + N V + L+ G +E EL
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239
Query: 239 LEPNNSGYCTLL 250
+EPN + +L+
Sbjct: 240 IEPNEFTFSSLI 251
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W MI Y + REAL F+EM+++G + +VT+ + L+ACA LGAL+ G
Sbjct: 287 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERG 346
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H G + V +G+AL+DMY+KCG++ ++ VF + E+N++ W S + GLA++
Sbjct: 347 KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMN 406
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + LA+F RM VEPNGVTF+ VL C+ AGLV+EGR F SM + I P +EH
Sbjct: 407 GMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEH 466
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+DA+ I +P+ +WGALL ++H+N+E+ A+++LM +E
Sbjct: 467 YGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIE 526
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YA+ W V+ +R MK G+ K+ PG S IE+ KV++F K+
Sbjct: 527 SKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV-KKVPGCSAIEVGGKVHEFFVGGKT 585
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI L++++++L+L Y+ + +L
Sbjct: 586 HPRHKEIEMMLAEMNQRLRLQGYIANTKEVL 616
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A+V A G D + +F + +++ WN++I G G + EAL +FD M
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS--ITPEVEHYGCMVDLLSKAG 192
+ VT +S L+AC G +E G+ +C +S + V ++D+ SK G
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGK---WVHSCAHSRGMRLSVTLGTALIDMYSKCG 376
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A+E+ S + N W + + G ++
Sbjct: 377 AVAAAMEVF-DSMGERNVYTWTSAVSGLAMN 406
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 207/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SWT +++ +++ REA+ F++M+ + + D T+ ++L+ACA G L LG
Sbjct: 275 MPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLG 334
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH + F I +ALVDMYAKCG L+ + VF ++ K++ WN++++GLA+H
Sbjct: 335 EKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMH 394
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM E PN VT I VL ACTHAGL+++G R F +M Y++ PEVEH
Sbjct: 395 GHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEH 454
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G LE+A+ LIR+ PNA+IWG LLG C++H +E+A ++ L+ LE
Sbjct: 455 YGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELE 514
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG ++L N+YA W V R+ M+ +G K+ G+S IE+ +V++F D+S
Sbjct: 515 PTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGT-KKPSGASSIEVNNEVHEFTVFDRS 573
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP SD IY ++ L +LK
Sbjct: 574 HPKSDNIYQVINGLRHELK 592
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 20/225 (8%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW +MI+ ++ + EA F+EM D ++ T+L +G +D ++
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEK----DGISWNTMLDGYVKVGKMDDAFKL 240
Query: 64 HLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
FD +V S +V Y K G ++ + ++F K+ KNL W I+ G A
Sbjct: 241 --------FDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAE 292
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEV 178
G A EA+++FD+M ++ + T +S+L+AC +GL+ G + S+ + T E+
Sbjct: 293 KGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEI 352
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +VD+ +K G L A ++ K + V W A+L G +H
Sbjct: 353 SN--ALVDMYAKCGRLNIAYDVFNDIK-NKDVVSWNAMLQGLAMH 394
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI +S N Q +A F M+ G D T +L C L + +H +
Sbjct: 86 YNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIE 145
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLD----RSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ GF DV++ ++L+D Y+KCGS + L V R +++ WNS+I GLA G
Sbjct: 146 KFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGAR-RDVVSWNSMISGLAKGGLYE 204
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYG 182
EA +FD M E +G+++ ++L G +++ + F M PE V +
Sbjct: 205 EARKVFDEM----PEKDGISWNTMLDGYVKVGKMDDAFKLFDEM-------PERNVVSWS 253
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
MV KAG +E A L + N V W ++ G
Sbjct: 254 TMVLGYCKAGDMEMARMLFDKMPVK-NLVSWTIIVSG 289
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W MI Y + REAL F+EM+++G + +VT+ + L+ACA LGAL+ G
Sbjct: 294 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERG 353
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H G + V +G+AL+DMY+KCG++ ++ VF + E+N++ W S + GLA++
Sbjct: 354 KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMN 413
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + LA+F RM VEPNGVTF+ VL C+ AGLV+EGR F SM + I P +EH
Sbjct: 414 GMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEH 473
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+DA+ I +P+ +WGALL ++H+N+E+ A+++LM +E
Sbjct: 474 YGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIE 533
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YA+ W V+ +R MK G+ K+ PG S IE+ KV++F K+
Sbjct: 534 SKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV-KKVPGCSAIEVGGKVHEFFVGGKT 592
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI L++++++L+L Y+ + +L
Sbjct: 593 HPRHKEIEMMLAEMNQRLRLQGYIANTKEVL 623
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A+V A G D + +F + +++ WN++I G G + EAL +FD M
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS--ITPEVEHYGCMVDLLSKAG 192
+ VT +S L+AC G +E G+ +C +S + V ++D+ SK G
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGK---WVHSCAHSRGMRLSVTLGTALIDMYSKCG 383
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A+E+ S + N W + + G ++
Sbjct: 384 AVAAAMEVF-DSMGERNVYTWTSAVSGLAMN 413
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 210/321 (65%), Gaps = 1/321 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWT +I+ Y+ + +A+ F M+ + PD++T+ VLSACA LGAL+LG
Sbjct: 203 MPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ G +V + +AL+DMYAK G++ R+LL+F ++ K + W ++I GLA+H
Sbjct: 263 EWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALH 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL MF RM + V+PN +TFI+VLSAC+H GLV+ R F +M Y+I P++EH
Sbjct: 323 GLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEH 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L++A +L++ F+PNA IWG+LL H + + + L+ LE
Sbjct: 383 YGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIELE 442
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNNSG LL N+YA + RW +R M++ G+ K+ PG S+IE+ +V +F A + S
Sbjct: 443 PNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGV-KKIPGGSFIEVNNRVNEFIAGETS 501
Query: 301 HPASDEIYSSLSKLDEQLKLA 321
HP DEIY + K++EQ +L+
Sbjct: 502 HPQFDEIYEVIYKINEQSRLS 522
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 38/253 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + T+I S + Q ++ FN ++++ + PD + L A L A G + H
Sbjct: 74 NIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFH 133
Query: 65 LYVMQIGFDIDVYIGSALVDM--------------------------------YAKCGSL 92
++ G +++ +L+ M YAK +
Sbjct: 134 SQAIRFGLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAKICDM 193
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ +F + ++NL W ++I G A H+A+A+F M +NV P+ +T ++VLSAC
Sbjct: 194 PNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSAC 253
Query: 153 THAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
G +E G R ++ + + + V + ++D+ +K+G ++ AL + S K +
Sbjct: 254 AQLGALELGEWIRNYIDI---HGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHK-TI 309
Query: 211 VIWGALLGGCKLH 223
V W ++ G LH
Sbjct: 310 VTWTTMIAGLALH 322
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/333 (42%), Positives = 212/333 (63%), Gaps = 7/333 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W +I Y+ N + EAL F +K + P T VL+ACA+L L LG
Sbjct: 341 MVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLG 400
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
++ H++V++ GF + DV++G++LVDMY K GS+ VF ++ ++ WN++I
Sbjct: 401 QQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMI 460
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G A +AL +F+RM+ N P+ VT I VLSAC H+GLV+EGRR F SMT + I
Sbjct: 461 VGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGI 520
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CM+DLL +AG L++ ELI + +P+AV+W +LLG C+LH+N+++ A
Sbjct: 521 IPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAG 580
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L L+P+NSG LL NMYAE+ +WA+V ++R +MK G+ K+ PG SWIE+ RKV F
Sbjct: 581 KLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQ-PGCSWIEIGRKVNVF 639
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
A D HP +EI+ +L + Q+ S E+
Sbjct: 640 LARDNIHPCRNEIHDTLRIIQMQMSRMSIDAEI 672
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 127/256 (49%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+I+SW ++ITCY QN EAL F M G PD+VT+A+V+SACA L A G
Sbjct: 208 MPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREG 267
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGS-------LDRSLL--------------- 97
R++H +++ F D+ + +ALVDMYAKCG DR +
Sbjct: 268 RQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAK 327
Query: 98 ---------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
VF ++ EKN+ WN +I A + EAL +F R+ E+V P T+ +V
Sbjct: 328 SANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNV 387
Query: 149 LSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRS 203
L+AC + ++ G++ L + PE + + +VD+ K G + D ++
Sbjct: 388 LNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFER 447
Query: 204 SKFQPNAVIWGALLGG 219
+ N V W A++ G
Sbjct: 448 MAARDN-VSWNAMIVG 462
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S+ ++ +Q+ + +AL M + + A+ LSACA A G
Sbjct: 107 IPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTG 166
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V + DVYIG+ALVDMYAKC + + VF + E+N+ WNS+I +
Sbjct: 167 EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQN 226
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EALA+F RM+ + P+ VT SV+SAC EGR+ M ++
Sbjct: 227 GPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVL 286
Query: 181 YGCMVDLLSKAG 192
+VD+ +K G
Sbjct: 287 NNALVDMYAKCG 298
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFK 101
T+LSA A LG+L R + FD + + +AL+ A+ G D +L +F
Sbjct: 55 TLLSAYARLGSLHDARRV--------FDGMPHRNTFSYNALLSACARLGRADDALALFGA 106
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ + + +N+++ LA HG +AL M ++ N +F S LSAC G
Sbjct: 107 IPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTG 166
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ ++ S +V +VD+ +K E+A ++ + + N V W +L+
Sbjct: 167 -EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP-ERNIVSWNSLI 220
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 80/210 (38%), Gaps = 48/210 (22%)
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F + ++ + L+ YA+ GSL + VF + +N F +N+++ A G A +ALA+F
Sbjct: 46 FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALF- 104
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
G P+ Y +V L++
Sbjct: 105 ---------------------------------------GAIPDPDQCSYNAVVAALAQH 125
Query: 192 GLLEDALELI---RSSKFQPNAVIWGALLGGC---KLHRNLEIAHIAVNELMILEPNNSG 245
G DAL + + F NA + + L C K R E H V + ++
Sbjct: 126 GRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSS--HGSDVY 183
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
T L++MYA+ R E K+ AM E I
Sbjct: 184 IGTALVDMYAKCERPEEAQKVFDAMPERNI 213
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 206/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +I+W MI+ Y+QN LD + +M+ +GI PD VT+ VLS+CAHLGA G
Sbjct: 220 MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+ + GF + ++ +AL++MYA+CG+L ++ +F + EKN+ W +II G +H
Sbjct: 280 REVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMH 339
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +FD MI + P+G F+SVLSAC+HAGL E+G F +M Y + P EH
Sbjct: 340 GQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEH 399
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG LE+A +LI S +P+ +WGALLG CK+HRN+E+A +A +++ E
Sbjct: 400 YSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFE 459
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY LL N+++E + ++RV M+E ++K PG S++E + +++ F A D++
Sbjct: 460 PTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKE-PGCSYVEYQGRIHLFLAGDRT 518
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP + EIY L L++ +K
Sbjct: 519 HPQAQEIYHMLDGLEDIIK 537
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 132/250 (52%), Gaps = 12/250 (4%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + +I YS N +F +A+ F +M+ G+S + VTM ++ CA L G +H
Sbjct: 125 VCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHAC 184
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D D+ +G+ L+ MY +CGS+D + +F + EK L WN++I G A +G A
Sbjct: 185 SVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHV 244
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR----RRFLSMTCGYSITPEVEHYG 182
L ++ +M + + P+ VT + VLS+C H G GR R LS G+ P +++
Sbjct: 245 LDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELS---GFGFNPFLKN-- 299
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-- 240
++++ ++ G L A I + N + W A++ G +H E+A +E++ +
Sbjct: 300 ALINMYARCGNLVKA-RAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL 358
Query: 241 PNNSGYCTLL 250
P+ + + ++L
Sbjct: 359 PDGAAFVSVL 368
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
SW + ++ + F+EAL+ + +M SG SP+ T +CA L G ++H +V
Sbjct: 23 SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKNL-FCWNSIIEGLAVHGFAHE 125
++ G + + ++ ++L+ MY KC ++ + VF + +NL C+N++I G +++ +
Sbjct: 83 IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCM 184
A+ +F +M E V N VT + ++ C AG + G L + + + + ++ C+
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDLSVGNCL 200
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + G ++ A +L + + W A++ G
Sbjct: 201 LTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISG 234
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 206/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+II++T+MIT SQ +A+ F EM G+ PD ++++L+ACA L A + G+++H
Sbjct: 471 NIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVH 530
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ F DV+ G+ALV YAKCGS++ + L F L +K + W+++I GLA HG
Sbjct: 531 AHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGK 590
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F RM+ E + PN +T SVL AC HAGLV+E + F SM + I EHY CM
Sbjct: 591 RALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCM 650
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL +AG L+DA+EL+ S F+ NA +WGALL ++HR+ E+ +A +L +LEP S
Sbjct: 651 IDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKS 710
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N YA W EV K+R MK+ ++K P SW+E++ +V+ F DKSHP +
Sbjct: 711 GTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKE-PAMSWVELKDRVHTFIVGDKSHPRA 769
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+IY+ L +L + + A YVP LE L
Sbjct: 770 RDIYAKLEELGDLMSKAGYVPNLEVDL 796
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 10/222 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ +SW M++ + +N + +A++ F EM SG+ P++ + V++AC L+ GR++
Sbjct: 165 RNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKV 224
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ G+D DV+ +ALVDMY+K G + + LVF K+ + ++ WN+ I G +HG
Sbjct: 225 HAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHD 284
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR----FLSMTCGYSITPEVE 179
AL + +M + PN T S+L AC AG R F+ C S +
Sbjct: 285 QHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSD----D 340
Query: 180 HYG-CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ G +VD+ +K GLL+DA ++ + + ++W AL+ GC
Sbjct: 341 YIGVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALISGC 381
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 8/219 (3%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++++T YS N REAL AF M+ G+ ++ + VL G LG ++H
Sbjct: 69 VSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGVQVHAV 125
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHE 125
+ G D+++ +ALV MY G +D + VF + R++N WN ++ + +
Sbjct: 126 AVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSD 185
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCM 184
A+ +F M++ V PN F V++ACT + +E GR+ + + GY +V +
Sbjct: 186 AVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYD--KDVFTANAL 243
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
VD+ SK G + A L+ + + V W A + GC LH
Sbjct: 244 VDMYSKLGDIHMA-ALVFGKVPKTDVVSWNAFISGCVLH 281
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 8/254 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++ W +I+ S E+L F M+ G ++ T+A VL + A L A+
Sbjct: 366 IPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDT 425
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +IGF D ++ + L+D Y KC L + VF + N+ + S+I L+
Sbjct: 426 TQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQC 485
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+A+ +F M+ + +EP+ S+L+AC E+G++ + +T +V
Sbjct: 486 DHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMT-DVFA 544
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNEL 236
+V +K G +EDA +L S V W A++GG H R L++ V+E
Sbjct: 545 GNALVYTYAKCGSIEDA-DLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDER 603
Query: 237 MILEPNNSGYCTLL 250
+ PN+ ++L
Sbjct: 604 --IAPNHITLTSVL 615
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLS--ACAHLGALD 58
+P D++SW I+ + + AL+ +MK+SG+ P+ T++++L A A GA
Sbjct: 263 VPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFA 322
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LGR+IH ++++ D D YIG ALVDMYAK G LD + VF + K+L WN++I G +
Sbjct: 323 LGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCS 382
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
G E+L++F RM E + N T +VL +
Sbjct: 383 HGGCHGESLSLFCRMRKEGSDINRTTLAAVLKS 415
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
SP+ ++ +L+ A +L LG IH ++++ G + + + L+ Y+KC +
Sbjct: 3 SPESIS--PLLTRYAATQSLFLGAHIHAHLLKSGL-LHAF-RNHLLSFYSKCRLPGSARR 58
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + + W+S++ + + EALA F M V N VL AGL
Sbjct: 59 VFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL 118
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ ++ ++ ++ +V + G +++A + + NAV W ++
Sbjct: 119 GVQ----VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMM 174
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 214/323 (66%), Gaps = 1/323 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++++SW ++I+ +S NKQ EA F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 502 GQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQ 561
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG++ SLL+F K ++ + WN++I G A+HG
Sbjct: 562 IHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQ 621
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM NV PN TF++VL AC+H GL+++G R F MT Y + P++EH+
Sbjct: 622 GFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFA 681
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++AL+ IRS + +AVIW LL CK+ +++E+A A + ++ L+P+
Sbjct: 682 CMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPD 741
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YAE +W +V++ R M++ G K+ PG SWIE++ +++ F A DK HP
Sbjct: 742 DSSVYILLSNVYAESGKWVDVSRTRRLMRQ-GRLKKEPGCSWIEVQSEMHGFLAGDKVHP 800
Query: 303 ASDEIYSSLSKLDEQLKLASYVP 325
S E+Y L+ L ++KL+ Y P
Sbjct: 801 RSREVYEMLNNLIVEMKLSGYEP 823
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +I QN+ + + + NEM G+ PD T +VL ACA L +L+ G
Sbjct: 399 MEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYG 458
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ G +D ++ S +VDMY KCG + + + ++ + L WNSII G +++
Sbjct: 459 SVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLN 518
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
+ EA F M+ V+P+ T+ +VL C + +E G++ G I E+
Sbjct: 519 KQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQ-----IHGQIIKQEMLG 573
Query: 179 EHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ Y +VD+ +K G + D+L + ++ + + V W A++ G LH
Sbjct: 574 DEYISSTLVDMYAKCGNMPDSLLMFEKAQ-KLDFVSWNAMICGYALH 619
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW +++ Y Q FR+++ EM G++PD+ T+A +L AC L L LG
Sbjct: 96 MPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALG 155
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH ++ G ++DV GSALVDMY KC SL+ +L F + E+N W + I G +
Sbjct: 156 VQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQN 215
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
L +F +M + + + SV +C
Sbjct: 216 EQYTRGLELFVQMQRLGLGVSQPAYASVFRSC 247
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 12/256 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + M+ + EAL F M SGI D V+++ V SACA + G
Sbjct: 298 LPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQG 357
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ GFD+DV + +A++D+Y KC +L + LVF ++ +++ WN+II L +
Sbjct: 358 LQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQN 417
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP---- 176
+ +A + M+ +EP+ T+ SVL AC +E G S+ G +I
Sbjct: 418 ECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYG-----SVVHGKAIKSGLGL 472
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ +VD+ K G++ +A +L Q V W +++ G L++ E A +E+
Sbjct: 473 DAFVSSTVVDMYCKCGMITEAQKLHDRIGGQ-ELVSWNSIISGFSLNKQSEEAQKFFSEM 531
Query: 237 MIL--EPNNSGYCTLL 250
+ + +P++ Y T+L
Sbjct: 532 LDIGVKPDHFTYATVL 547
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW I QN+Q+ L+ F +M+ G+ Q A+V +CA + L
Sbjct: 197 MGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTA 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ F D +G+A+VD+YAK SL + FF L + N+++ GL
Sbjct: 257 RQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRT 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-GLVEEGRRRFLSMTCGYSITPEVE 179
G EAL +F M + + V+ V SAC G ++ + L++ G+ + V
Sbjct: 317 GLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVR 376
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ ++DL K L +A L+ Q ++V W A++ + + E +NE++
Sbjct: 377 N--AILDLYGKCKALVEAY-LVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRY 433
Query: 239 -LEPNNSGYCTLL 250
+EP++ Y ++L
Sbjct: 434 GMEPDDFTYGSVL 446
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 45/226 (19%)
Query: 43 TMATVLSACAHLG--ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF 100
T + + CA G AL G+ H ++ GF ++ + L+ MYA+CG + VF
Sbjct: 4 TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--- 157
+ ++ WN+++ A G A ++F M +P+ V++ ++LS G+
Sbjct: 64 VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAM----PDPDVVSWNALLSGYCQRGMFRD 119
Query: 158 -----VEEGRR---------RFLSMTCG-----------------YSITPEVEHYGCMVD 186
VE RR L CG + +V +VD
Sbjct: 120 SVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVD 179
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC----KLHRNLEI 228
+ K LEDAL + N+V WGA + GC + R LE+
Sbjct: 180 MYGKCRSLEDALRFFHGMG-ERNSVSWGAAIAGCVQNEQYTRGLEL 224
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 205/316 (64%), Gaps = 1/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW +MI+ + F+EAL F M+ G+ PD VT+ VL++CA+LG L+LG
Sbjct: 299 MPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELG 358
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + D Y+ +ALVDMYAKCGS+D++ +VF ++ K+++ + ++I G A+H
Sbjct: 359 KWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMH 418
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ALA+F M V P+ VT + VLSAC+HAGL+EEGRR F M+ Y + P+ EH
Sbjct: 419 GKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEH 478
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A P+A +WG+LLG CK+H +E+ + +L+ +E
Sbjct: 479 YGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEME 538
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G L+ N+Y+ +RW + K R AMK+ I K+ PG S IE++ V++F +KS
Sbjct: 539 PERDGAYILMSNIYSSANRWRDALKWRKAMKQNNI-KKTPGCSSIEVDGMVHEFRKGEKS 597
Query: 301 HPASDEIYSSLSKLDE 316
HP S E+ S+ + + E
Sbjct: 598 HPKSREMISNSNIIKE 613
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D+ISWTT+I YS+ EA+ AF M + D++T+ VLSAC+ LG LG+
Sbjct: 200 PHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLGK 256
Query: 62 EIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+I Y+ FD+ DV++G+AL+DMY KCG + +F + KNL WNS+I GLA
Sbjct: 257 KILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAH 316
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL MF RM ++P+ VT + VL++C + G +E G+ + + + +
Sbjct: 317 QGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNH-MKADGY 375
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G ++ A + ++ K + + + A++ G +H
Sbjct: 376 VANALVDMYAKCGSIDQAFMVFQAMKCK-DVYSYTAMIVGFAMH 418
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 123/291 (42%), Gaps = 39/291 (13%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
+ N F + +M G+SPD T+ +L AC+ A +IH + ++ G ++
Sbjct: 114 TSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNL 173
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + L+ YA G ++ VF + +L W ++I+ + G+ EA+A F RM
Sbjct: 174 FVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM--- 230
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRF----------------------LSMTCG--- 171
N + +T + VLSAC+ G G++ + + CG
Sbjct: 231 NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPH 290
Query: 172 -----YSITP--EVEHYGCMVDLLSKAGLLEDALELIRSSK---FQPNAVIWGALLGGCK 221
+ + P + + M+ L+ GL ++AL + R + +P++V +L C
Sbjct: 291 LARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCA 350
Query: 222 LHRNLEIAHIAVNELMILEPNNSGY-CTLLLNMYAEVSRWAEVTKIRVAMK 271
+LE+ + + GY L++MYA+ + + AMK
Sbjct: 351 NLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMK 401
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W MI Y + REAL F+EM+++G + +VT+ + L+ACA LGAL+ G
Sbjct: 294 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERG 353
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H G + V +G+AL+DMY+KCG++ ++ VF + E+N++ W S + GLA++
Sbjct: 354 KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMN 413
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + LA+F RM VEPNGVTF+ VL C+ AGLV+EGR F SM + I P +EH
Sbjct: 414 GMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEH 473
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+DA+ I +P+ +WGALL ++H+N+E+ A+++LM +E
Sbjct: 474 YGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIE 533
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YA+ W V+ +R MK G+ K+ PG S IE+ KV++F K+
Sbjct: 534 SKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV-KKVPGCSAIEVGGKVHEFFVGGKT 592
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI L++++++L+L Y+ + +L
Sbjct: 593 HPRHKEIEMMLAEMNQRLRLQGYIANTKEVL 623
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A+V A G D + +F + +++ WN++I G G + EAL +FD M
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS--ITPEVEHYGCMVDLLSKAG 192
+ VT +S L+AC G +E G+ +C +S + V ++D+ SK G
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGK---WVHSCAHSRGMRLSVTLGTALIDMYSKCG 383
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A+E+ S + N W + + G ++
Sbjct: 384 AVAAAMEVF-DSMGERNVYTWTSAVSGLAMN 413
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 208/324 (64%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++++T+MIT YSQ EAL + +M+++ I PD +++L+ACA+L A + G+++H
Sbjct: 450 DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLH 509
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ ++ GF D++ ++LV+MYAKCGS++ + F ++ + + W+++I G A HG
Sbjct: 510 VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGK 569
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F++M+ + V PN +T +SVL AC HAGLV EG++ F M + I P EHY CM
Sbjct: 570 EALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACM 629
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
+DLL ++G L +A+EL+ S F+ + +WGALLG ++H+N+E+ A L LEP S
Sbjct: 630 IDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKS 689
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W V K+R MK+ ++K PG SWIE++ KVY F D+SH S
Sbjct: 690 GTHVLLANIYASAGMWENVAKVRKFMKDSKVKKE-PGMSWIEIKDKVYTFIVGDRSHSRS 748
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
DEIY+ L +L + L A Y +E
Sbjct: 749 DEIYAKLDQLGDLLSKAGYSSIVE 772
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++SW + +CY Q++ EA+ F EM SGI P++ +++ +L+ACA L DLGR+I
Sbjct: 146 RNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKI 205
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++G D+D + +ALVDMY+K G ++ ++ VF + ++ WN+II G +H
Sbjct: 206 HGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCN 265
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL + D M PN T S L AC G E GR+ S+ + + G
Sbjct: 266 DLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVG- 324
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ SK +++DA S + + + W AL+ G
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISG 359
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 151/294 (51%), Gaps = 19/294 (6%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW+++++ Y QN EAL FNEM G+ ++ T +VL AC+ L++GR++H
Sbjct: 46 DVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVH 105
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ GF+ D ++ + LV MYAKCG LD S +F + E+N+ WN++
Sbjct: 106 GMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCG 165
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYG 182
EA+ +F M+ + PN + +L+AC AGL +EG R+ + + +
Sbjct: 166 EAVGLFKEMVRSGIMPNEFSISIILNAC--AGL-QEGDLGRKIHGLMLKMGLDLDQFSAN 222
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
+VD+ SKAG +E A+ + + P+ V W A++ GC LH ++A + ++E+
Sbjct: 223 ALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGCVLHDCNDLALMLLDEM-----K 276
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
SG + + + + A + KELG R SS I+M+ FAA
Sbjct: 277 GSGTRPNMFTLSSALKACAA-----MGFKELG---RQLHSSLIKMDAHSDLFAA 322
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 122/225 (54%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DII+W +I+ YSQ +A+ F++M + I +Q T++TVL + A L A+ +
Sbjct: 345 MPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVC 404
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ G D Y+ ++L+D Y KC +D + +F + ++L + S+I + +
Sbjct: 405 KQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQY 464
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL ++ +M +++P+ S+L+AC + E+G++ + + ++
Sbjct: 465 GDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVH-AIKFGFMCDIFA 523
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNA--VIWGALLGGCKLH 223
+V++ +K G +EDA R+ PN V W A++GG H
Sbjct: 524 SNSLVNMYAKCGSIEDA---DRAFSEIPNRGIVSWSAMIGGYAQH 565
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 44/291 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW +I + AL +EMK SG P+ T+++ L ACA +G +LGR++H
Sbjct: 248 DVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLH 307
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ D++ LVDMY+KC +D + + + +K++ WN++I G + G
Sbjct: 308 SSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHL 367
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCG-----YSITPEV 178
+A+++F +M E+++ N T +VL + ++ ++ +S+ G Y I +
Sbjct: 368 DAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLL 427
Query: 179 EHYG------------------------CMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ YG M+ S+ G E+AL+L ++ + +P+
Sbjct: 428 DTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPF 487
Query: 212 IWGALLGGC------KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
I +LL C + + L + I + + +NS L+NMYA+
Sbjct: 488 ICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS-----LVNMYAK 533
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 120/251 (47%), Gaps = 15/251 (5%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E+H ++++ GF D + + LV +Y+KC + + + E ++ W+S++ G +G
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEH 180
F EAL +F+ M V+ N TF SVL AC+ + GR+ +++ G+ V +
Sbjct: 62 FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V + +K GLL+D+ L + N V W AL C + L + + + M+
Sbjct: 122 --TLVVMYAKCGLLDDSRRLF-GGIVERNVVSWNALF-SCYVQSELCGEAVGLFKEMVRS 177
Query: 239 -LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE-KRCPGSSWIEMERKVYQFAA 296
+ PN +++LN A + KI M ++G++ + ++ ++M K +
Sbjct: 178 GIMPNEFSI-SIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEG 236
Query: 297 S-----DKSHP 302
+ D +HP
Sbjct: 237 AVAVFQDIAHP 247
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I+SW+ MI Y+Q+ +EAL FN+M G+ P+ +T+ +VL AC H G ++ G
Sbjct: 547 IPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEG 606
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGL 117
++ + M++ F I + ++D+ + G L+ ++ LV E + F W +++
Sbjct: 607 KQ-YFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAA 665
Query: 118 AVH 120
+H
Sbjct: 666 RIH 668
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 201/324 (62%), Gaps = 1/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D I W +MIT SQN + EA++ F +M G D V+++ LSACA+L AL G+EI
Sbjct: 425 KDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEI 484
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ D+Y S+L+DMYAKCG+L+ S VF +++EKN WNSII HG
Sbjct: 485 HGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDL 544
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
E LA+F M+ ++P+ VTF+ ++SAC HAG V+EG R + MT Y I +EHY C
Sbjct: 545 KECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYAC 604
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ D+ +AG L +A E I S F P+A +WG LLG C +H N+E+A +A L L+P N
Sbjct: 605 VADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLN 664
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N+ A +W +V K+R MKE G+ K PG SWIE+ + F A+D SHP
Sbjct: 665 SGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRK-VPGYSWIEVNNATHMFVAADGSHPL 723
Query: 304 SDEIYSSLSKLDEQLKLASYVPEL 327
+ +IYS L L +LK YVP+L
Sbjct: 724 TAQIYSVLDSLLLELKKEGYVPQL 747
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D + TTMI+ Y N + +EAL+AF + + P VT +++ A A L AL+LG+E+H
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELH 384
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ D ++GSA++DMYAKCG LD + VF ++ EK+ CWNS+I + +G
Sbjct: 385 GSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M E + V+ LSAC + + G+ M G + ++ +
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSL 503
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+D+ +K G L + + + + N V W +++ H +L+
Sbjct: 504 IDMYAKCGNLNFSRRVFDRMQ-EKNEVSWNSIISAYGNHGDLK 545
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
+W MI ++ QF AL + +M +G+SPD+ T V+ AC L ++ +G+ +H V
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+G DV++GS+L+ +YA+ G L + +F + +K+ WN ++ G +G + A+
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAI 144
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVD 186
+F M + ++PN VTF VLS C +++ G + +++ CG + V + ++
Sbjct: 145 KIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVAN--TLLA 202
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ SK L+ A +L + Q + V W ++ G
Sbjct: 203 MYSKCQCLQAARKLFDTLP-QSDLVSWNGIISG 234
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D + W M+ Y +N A+ F EM++S I P+ VT A VLS CA LDLG
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + G ++D + + L+ MY+KC L + +F L + +L WN II G +
Sbjct: 179 TQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVL 149
G EA +F MI ++P+ +TF S L
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFL 267
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ +SW ++I+ Y + +E L F+EM +GI PD VT ++SAC H G +D G
Sbjct: 523 MQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEG 582
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
R HL + G + + + DM+ + G L + + + W +++
Sbjct: 583 IRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACH 642
Query: 119 VHG 121
+HG
Sbjct: 643 IHG 645
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MY + GSL + +F+ L+ WN +I G + G + AL + +M+ V P+ T
Sbjct: 1 MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
F V+ AC V+ G+ ++ + +V ++ L ++ G L DA L +
Sbjct: 61 FPYVVKACCGLKSVKMGKIVHETVNL-MGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119
Query: 205 KFQPNAVIWGALLGG 219
Q ++V+W +L G
Sbjct: 120 P-QKDSVLWNVMLNG 133
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 212/334 (63%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP +D +SW T+IT Y QN EA++ + M K+ G+ Q T +VL A +HLGAL
Sbjct: 332 MPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ 391
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H ++IG ++DVY+G+ L+D+YAKCG L ++L+F K+ ++ WN+II GL V
Sbjct: 392 GMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGV 451
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +F RM E ++P+ VTF+S+L+AC+HAGLV++GR F M Y I P +
Sbjct: 452 HGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAK 511
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CM D+L +AG L++A I++ +P++ +WGALLG C++H N+E+ +A L L
Sbjct: 512 HYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 571
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P N GY L+ NMYA+V +W V ++R ++ ++K PG S IE++R V F + ++
Sbjct: 572 DPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQK-TPGWSSIEVKRSVNVFYSGNQ 630
Query: 300 S--HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ HP +EI + L L +++ YV + +L
Sbjct: 631 TEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVL 664
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W ++I+ Q Q AL F M+ SG+SPD +T+ ++ SA A G
Sbjct: 230 MECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSA 289
Query: 61 REIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ +H YVM+ G+D+D + G+A+VDMYAK +++ + +F + ++ WN++I G
Sbjct: 290 KSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQ 349
Query: 120 HGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPE 177
+G A+EA+ + M +E ++ TF+SVL A +H G +++G R LS+ G ++ +
Sbjct: 350 NGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV--D 407
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V C++DL +K G L +A+ L + W A++ G +H
Sbjct: 408 VYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP-WNAIISGLGVH 452
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 11/224 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ +W M++ +N + EA+ F M G++ D VT+++VL C LG L
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLA 188
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H+Y ++ G D ++++ +AL+D+Y K G L+ + VF + ++L WNSII G
Sbjct: 189 LVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQR 248
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-----GYSIT 175
G AL MF M V P+ +T +S+ SA G +GR S+ C G+ +
Sbjct: 249 GQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGG---DGRSA-KSLHCYVMRRGWDVD 304
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ +VD+ +K +E A + S Q ++V W L+ G
Sbjct: 305 -DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNTLITG 346
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLL 97
PD T +++ A + ++H +++G V+ +LV Y + G + +
Sbjct: 68 PDGFTFPSLIRAAPSNAS---AAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYK 124
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++ E+++ WN+++ GL + A EA+ +F RM+ E V + VT SVL C G
Sbjct: 125 VFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLG- 183
Query: 158 VEEGRRRFLSMT-----CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ L++ + + E+ ++D+ K G+LE+A + + + + V
Sbjct: 184 -----DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECR-DLVT 237
Query: 213 WGALLGGCK 221
W +++ GC+
Sbjct: 238 WNSIISGCE 246
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 206/331 (62%), Gaps = 7/331 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+I+W +I +QN + EAL F +K + P T +L+ACA+L L LG
Sbjct: 345 MMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLG 404
Query: 61 REIHLYVMQIGF------DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R+ H +V++ GF D DV++G++L+DMY KCGS++ VF + EK+ WN++I
Sbjct: 405 RQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMI 464
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +GF ++AL +F +M+ P+ VT I VL AC+HAGL++EGR F SMT + +
Sbjct: 465 VGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGL 524
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CMVDLL +AG LE+A LI QP+A++WG+LL CK+HRN+++ V
Sbjct: 525 MPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVK 584
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L+ ++P NSG LL NMYAE W V ++R M++ G+ K+ PG SWIE++ ++ F
Sbjct: 585 KLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQ-PGCSWIEIQGELNVF 643
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
DK H EIY L + +Q+K A YVP
Sbjct: 644 MVKDKRHARKKEIYMVLRTILQQMKQAGYVP 674
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 97/163 (59%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D SW +MI+ + Q+ +F EAL F +M G ++ + + LSACA L L LG
Sbjct: 111 MPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLG 170
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V + + DVY+GSALVDMY+KCG ++ + VF ++ ++ WNS+I +
Sbjct: 171 SQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQN 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
G EAL +F MI VEP+ VT SV+SAC ++EG++
Sbjct: 231 GPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 48/261 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +SW ++ITCY QN EAL F EM G+ PD+VT+A+V+SACA + A+ G
Sbjct: 212 MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEG 271
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLRE------------- 104
++IH V++ F D+ +G+AL+DMYAKC ++ + ++F +R
Sbjct: 272 QQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAK 331
Query: 105 ----------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
K++ WN++I G +G EAL +F + E+V P TF ++
Sbjct: 332 ASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNL 391
Query: 149 LSACTHAGLVEEGRR----------RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
L+AC + ++ GR+ RF Y +V ++D+ K G +E+
Sbjct: 392 LNACANLADLQLGRQAHSHVLKHGFRF-----QYGEDSDVFVGNSLIDMYMKCGSVENGC 446
Query: 199 ELIRSSKFQPNAVIWGALLGG 219
+ + + + V W A++ G
Sbjct: 447 RVFQ-HMLEKDCVSWNAMIVG 466
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D + +L+ CA + +H +++ F + +I + L+D+Y KCG +D + +F
Sbjct: 18 DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
++ E+N+F WNSII GF +A+ +F++M + + ++ S++S G +
Sbjct: 78 DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKM----PQVDQCSWNSMISGFEQHGRFD 133
Query: 160 EGRRRFLSM 168
E F M
Sbjct: 134 EALVYFAQM 142
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 215/335 (64%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS---GISPDQVTMATVLSACAHLGAL 57
+P RD +SW + +CY +NK+ R+ L F++MKN + PD VT L ACA+LGAL
Sbjct: 174 IPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGAL 233
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
D G+++H ++ + G + + + LV MY++CGS+D++ VF+ +RE+N+ W ++I GL
Sbjct: 234 DFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGL 293
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITP 176
A++GF EA+ F+ M+ + P T +LSAC+H+GLV EG F M G + I P
Sbjct: 294 AMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKP 353
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ HYGC+VDLL +A LL+ A LI+S + +P++ IW LLG C++H ++E+ ++ L
Sbjct: 354 NLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHL 413
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ L+ +G LLLN Y+ V +W +VT++R MKE I + PG S IE++ V++F
Sbjct: 414 IELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTK-PGCSAIELQGTVHEFIV 472
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP +EIY L+++++QLK+A YV E+ + L
Sbjct: 473 DDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSEL 507
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 10/234 (4%)
Query: 10 TTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
TMI +S ++ E F ++ NS + + ++ + L C G L G +IH +
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIF 140
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
GF D + + L+D+Y+ C + + VF ++ +++ WN + + + L
Sbjct: 141 SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLV 200
Query: 129 MFDRM---IYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGC 183
+FD+M + V+P+GVT + L AC + G ++ G++ F+ ++ +
Sbjct: 201 LFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDEN---GLSGALNLSNT 257
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+V + S+ G ++ A ++ + + N V W AL+ G ++ + A A NE++
Sbjct: 258 LVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAMNGFGKEAIEAFNEML 310
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 202/324 (62%), Gaps = 1/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D I W +MIT SQN + EA++ F +M G D V+++ LSACA+L AL G+EI
Sbjct: 425 KDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEI 484
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ D+Y S+L+DMYAKCG+L+ S VF +++E+N WNSII HG
Sbjct: 485 HGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDL 544
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
E LA+F M+ ++P+ VTF+ ++SAC HAG V+EG R + MT Y I +EHY C
Sbjct: 545 KECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYAC 604
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ D+ +AG L++A E I S F P+A +WG LLG C +H N+E+A +A L L+P N
Sbjct: 605 VADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLN 664
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N+ A +W +V K+R MKE G+ K PG SWIE+ + F A+D SHP
Sbjct: 665 SGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRK-VPGYSWIEVNNATHMFVAADGSHPL 723
Query: 304 SDEIYSSLSKLDEQLKLASYVPEL 327
+ +IYS L L +LK YVP+L
Sbjct: 724 TAQIYSVLDSLLLELKKEGYVPQL 747
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D + TTMI+ Y N + +EAL+AF + + P VT +++ A A L AL+LG+E+H
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELH 384
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ D ++GSA++DMYAKCG LD + VF ++ EK+ CWNS+I + +G
Sbjct: 385 GSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M E + V+ LSAC + + G+ M G + ++ +
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSL 503
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+D+ +K G L + + + + N V W +++ H +L+
Sbjct: 504 IDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGDLK 545
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
+W MI ++ QF AL + +M +G+SPD+ T V+ AC L ++ +G+ +H V
Sbjct: 25 AWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETV 84
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+G DV++GS+L+ +YA+ G L + +F + +K+ WN ++ G +G + A+
Sbjct: 85 NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAI 144
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVD 186
+F M + ++PN VTF VLS C +++ G + ++++CG + V + ++
Sbjct: 145 KIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVAN--TLLA 202
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ SK L+ A +L +S Q + V W ++ G
Sbjct: 203 MYSKCQCLQAARKLFDTSP-QSDLVSWNGIISG 234
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 80/149 (53%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D + W M+ Y +N A+ F EM++S I P+ VT A VLS CA LDLG
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + G ++D + + L+ MY+KC L + +F + +L WN II G +
Sbjct: 179 TQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVL 149
G EA +F MI ++P+ +TF S L
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFL 267
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D++SW +I+ Y QN EA F M ++GI PD +T A+ L L +L +
Sbjct: 221 PQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCK 280
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
EIH Y+++ +DV++ SAL+D+Y KC ++ + + + + ++I G ++G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL F ++ E ++P VTF S+ A AGL + L + + E H
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPA--FAGLAALNLGKELHGSIIKTKLDEKCHV 398
Query: 182 G-CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
G ++D+ +K G L+ A + + +A+ W +++ C
Sbjct: 399 GSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNSMITSC 437
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW ++I+ Y + +E L F+EM +GI PD VT ++SAC H G +D G
Sbjct: 523 MQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEG 582
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
R HL + G + + + DM+ + G LD + + + W +++
Sbjct: 583 IRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACH 642
Query: 119 VHG 121
+HG
Sbjct: 643 IHG 645
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MY + GSL + +F+ L+ WN +I G + G + AL + +M+ V P+ T
Sbjct: 1 MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
F V+ AC V+ G+ ++ + +V ++ L ++ G L DA L +
Sbjct: 61 FPYVVKACCGLKSVKMGKIVHETVNL-MGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119
Query: 205 KFQPNAVIWGALLGG 219
Q ++V+W +L G
Sbjct: 120 P-QKDSVLWNVMLNG 133
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/333 (42%), Positives = 212/333 (63%), Gaps = 4/333 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M+T Y+QN +AL+ F +++ G+ D+VT+ V+SACA LGA
Sbjct: 202 LPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYA 261
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
I GF + +V +GSAL+DMY+KCG+++ + VF +RE+N+F ++S+I G A
Sbjct: 262 NWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFA 321
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A A+ +F M+ V+PN VTF+ VL+AC+HAGLV++G++ F SM Y + P
Sbjct: 322 IHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTA 381
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
E Y CM DLLS+AG LE AL+L+ + + + +WGALLG +H N ++A IA L
Sbjct: 382 ELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE 441
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK-VYQFAAS 297
LEP+N G LL N YA RW +V+K+R ++E ++K PG SW+E + +++F A
Sbjct: 442 LEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKN-PGWSWVEAKNGMIHKFVAG 500
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
D SHP +EI L+ L E+LK Y P L ++
Sbjct: 501 DVSHPKINEIKKELNDLLERLKGIGYQPNLSSL 533
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 34/250 (13%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+WT +I Y+ +AL ++ M+ +SP T + + SACA + LG ++H
Sbjct: 75 FAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQ 134
Query: 67 VMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII----------- 114
+ +G F D+Y+ +A++DMY KCGSL + +VF ++ E+++ W +I
Sbjct: 135 TLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRA 194
Query: 115 -----EGLAVH----------GFAHEALAM-----FDRMIYENVEPNGVTFISVLSACTH 154
+GL V G+A A+ M F R+ E VE + VT + V+SAC
Sbjct: 195 ARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQ 254
Query: 155 AGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G + R ++ + G+ + V ++D+ SK G +E+A ++ + + + N +
Sbjct: 255 LGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMR-ERNVFSY 313
Query: 214 GALLGGCKLH 223
+++ G +H
Sbjct: 314 SSMIVGFAIH 323
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
L+F +L N F W ++I A+ G +AL+ + M V P TF ++ SAC
Sbjct: 64 LLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSAC 119
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 206/325 (63%), Gaps = 2/325 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
PA++++ WTT+I Y++ REA + + +M+ +G+ PD + ++L+ACA G L LG+
Sbjct: 277 PAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGK 336
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
IH + + F + +A +DMYAKCG LD + VF + +K++ WNS+I+G A+H
Sbjct: 337 RIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMH 396
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM+ E EP+ TF+ +L ACTHAGLV EGR+ F SM Y I P+VEH
Sbjct: 397 GHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEH 456
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL + G L++A L+RS +PNA+I G LL C++H +++ A +L +E
Sbjct: 457 YGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVE 516
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G +LL N+YA+ W V +R+ M G +K G+S IE+E +V++F D+S
Sbjct: 517 PTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPS-GASSIEVEEEVHEFTVFDQS 575
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP SD+IY + +L + L+ YVP
Sbjct: 576 HPKSDDIYKMIDRLVQDLRQVGYVP 600
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 19/234 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W +MI + + A F+EM D V+ T+L A G +D
Sbjct: 183 MKERDVVTWNSMIGGLVRCGELEGACKLFDEMPER----DMVSWNTMLDGYAKAGEMDRA 238
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ + Q ++ S +V Y+K G +D + ++F + KN+ W +II G A
Sbjct: 239 FELFERMPQR----NIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEK 294
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-----TCGYSIT 175
GF EA ++ +M + P+ IS+L+AC +G++ G+R SM CG +
Sbjct: 295 GFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVL 354
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+D+ +K G L+ A ++ + + V W +++ G +H + E A
Sbjct: 355 ------NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKA 402
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 13/222 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ + ++I ++ N +AF +M+ +G+ PD T +L AC +L L
Sbjct: 79 VPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPL 138
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFKLREKNLFCWNSIIEGL 117
R IH +V + GF D+++ ++L+D Y++CGS LD ++ +F ++E+++ WNS+I GL
Sbjct: 139 VRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGL 198
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G A +FD M E + V++ ++L AG ++ F M
Sbjct: 199 VRCGELEGACKLFDEM----PERDMVSWNTMLDGYAKAGEMDRAFELFERMP-----QRN 249
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + MV SK G ++ A L + N V+W ++ G
Sbjct: 250 IVSWSTMVCGYSKGGDMDMARVLFDRCPAK-NVVLWTTIIAG 290
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW +MI ++ + +AL+ F+ M G PD T +L AC H G ++ G
Sbjct: 378 MAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEG 437
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R+ + Y M+ + I V ++D+ + G L + + + E N +++
Sbjct: 438 RK-YFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNAC 496
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+H A A+ +++ VEP S+LS
Sbjct: 497 RMHNDVDFARAVCEQLF--KVEPTDPGNYSLLS 527
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 215/335 (64%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS---GISPDQVTMATVLSACAHLGAL 57
+P RD +SW +I+CY +NK+ R+ L F++MKN + PD VT L ACA+LGAL
Sbjct: 174 IPQRDTVSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGAL 233
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
D G+++H ++ + G + + + LV MY++CGS+D++ VF ++RE+N+ W ++I GL
Sbjct: 234 DFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGL 293
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITP 176
A++GF EA+ F+ M+ + P T +LSAC+H+GLV+EG F M G + I P
Sbjct: 294 AMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKP 353
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ HYGC+VDLL +A LL+ A LI+S + +P++ IW LLG C++H N+E+ + L
Sbjct: 354 NLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHL 413
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ + +G LLLN Y+ V +W +VT++R MK+ I+ PG S IE++ V++F
Sbjct: 414 IEFKAEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTN-PGCSAIELQGTVHEFIV 472
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP +EIY L+++++QLK+A YV E+ + L
Sbjct: 473 DDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSEL 507
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 110/234 (47%), Gaps = 10/234 (4%)
Query: 10 TTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
TMI +S ++ E F ++ N + ++ + L C G L G +IH +
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIF 140
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
GF D + + L+D+Y+ C + + VF ++ +++ WN +I + + L
Sbjct: 141 SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLV 200
Query: 129 MFDRM---IYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGC 183
+FD+M + V+P+ VT + L AC + G ++ G++ F+ ++ +
Sbjct: 201 LFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDEN---GLSGALNLSNT 257
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+V + S+ G ++ A E+ + + N V W A++ G ++ + A A NE++
Sbjct: 258 LVSMYSRCGSMDKAYEVFNRMR-ERNVVSWTAMISGLAMNGFGKEAIEAFNEML 310
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/314 (44%), Positives = 209/314 (66%), Gaps = 1/314 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + I SWT +++ Y++ + +AL+ F M+ GI PD++++ +VL ACA LGAL+LG
Sbjct: 209 MQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y + GF ++ + +AL++MYAKCGS+D +F ++ E+++ W+++I GLA H
Sbjct: 269 KWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANH 328
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AHEA+ +F M +EPN +TF+ +LSAC HAGL+ EG R F SM Y+I P VEH
Sbjct: 329 GRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEH 388
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+V+LL +G L+ ALELI+ +P++ IWG+LL C+ H NLEIA IA+ L+ LE
Sbjct: 389 YGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELE 448
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G LL N+YA++ +W V+++R M+ + K+ PG S IE++ V +FA+ D S
Sbjct: 449 PADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM-KKTPGCSSIEVDNMVQEFASGDDS 507
Query: 301 HPASDEIYSSLSKL 314
P S IY L L
Sbjct: 508 KPFSKAIYRVLKLL 521
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 79/286 (27%)
Query: 9 WTTMITCYSQNKQFREALDAFNEM-----KNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ MI Y NK + A+ + +M + I PD+ T V+ +CA L DLG+++
Sbjct: 80 YNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 139
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLD------------------------------ 93
H +V + G + + ++LV+MY KC SLD
Sbjct: 140 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQM 199
Query: 94 -RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
R+ +F ++++K +F W +I+ G A G +AL F RM +EP+ ++ +SVL AC
Sbjct: 200 RRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPAC 259
Query: 153 THAGLVE-----------------------------------EGRRRFLSMTCGYSITPE 177
G +E EGRR F M +
Sbjct: 260 AQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMN-----ERD 314
Query: 178 VEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
V + M+ L+ G +A+EL ++ +K +PN + + LL C
Sbjct: 315 VISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSAC 360
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 204/326 (62%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW+ MI+ Y+Q +F E L F EM+ G PD+ + +V+SAC HL ALD G
Sbjct: 381 MPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG 440
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + G I++ +G+ L++MY K G ++ +L VF L EK + WN++I GLA++
Sbjct: 441 KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMN 500
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++L F M V PN +TF++VL AC H GLV+EG R F SM + I P ++H
Sbjct: 501 GLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKH 560
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG+L++A ELI S P+ WGALLG CK + + E +L+ L
Sbjct: 561 YGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELH 620
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G+ LL N+YA W +V ++R M++ G+ K PG S IE +V++F A DK+
Sbjct: 621 PDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK-TPGCSMIEAHGRVHEFLAGDKT 679
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP ++ I L ++ ++LKL Y P+
Sbjct: 680 HPQNEHIEHMLDEMAKKLKLEGYAPD 705
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 47/257 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW+ +I+CY QN+ + EAL F EM +GI D+V + +VLSAC+ L + G
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITG 308
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KC 89
+ +H V+++G + V + +AL+ MY+ KC
Sbjct: 309 KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKC 368
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G ++++ +F + +K+ W+++I G A E L +F M E +P+ +SV+
Sbjct: 369 GEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVI 428
Query: 150 SACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
SACTH +++G R+ L + T ++++ K G +EDALE+ +
Sbjct: 429 SACTHLAALDQGKWIHAYIRKNGLKINIILGTT--------LINMYMKLGCVEDALEVFK 480
Query: 203 SSKFQPNAVIWGALLGG 219
+ + W AL+ G
Sbjct: 481 GLE-EKGVSTWNALILG 496
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDLGREIHLYVM 68
TM+ Y Q +A+ + M S ++ D T + +C+ L D G+ I +V+
Sbjct: 95 NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFD-GKCIQDHVL 153
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GFD DVYI + L++MYA CG+L + VF ++ WNS++ G + G EA
Sbjct: 154 KVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKD 213
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
++DRM NV + S++ G VEE + F M
Sbjct: 214 VYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFNEM 249
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 215/328 (65%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++W MIT Y+QN EA+ F+ MK +G+ PD++T+A VLSAC+ +GAL+LG E+
Sbjct: 294 KDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSEL 353
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y G +VY+G+ALVDMYAKCG LD+++ VF K+R KN+ WN++I GLA +G
Sbjct: 354 DGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQG 413
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+ F+ M E+ ++P+ +TFI VLSAC HAGLV++G+R F S+T + I P++EHY
Sbjct: 414 DEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYS 473
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD L+++G LE+ + I + +AV+ GALL C+ +N+EI +N ++ LEP
Sbjct: 474 CMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPT 533
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + K+R M+E G+ K PG SW+E+ KV +F A D+
Sbjct: 534 NSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNK-TPGCSWVEISGKVLEFYAGDEPQH 592
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAM 330
+D++Y L L ++++L YVP L+ +
Sbjct: 593 GADDMYQVLDLLVDEMRLEGYVPNLDVV 620
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P+RD++SW M+ Y + E +M K+ + P+ VT+A VL+AC G L L
Sbjct: 189 IPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVL 248
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + + G + D +GSALV MY KCG + + VF + +K++ WN++I G A
Sbjct: 249 GRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQ 308
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G ++EA+++F M V P+ +T VLSAC+ G +E G +C + V
Sbjct: 309 NGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASC-RGLYNNVY 367
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G L+ A+E+ R + + N W AL+ G
Sbjct: 368 VGTALVDMYAKCGDLDKAIEVFRKMRCK-NVASWNALICG 406
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
M +++ SW +I + N Q EA+ F M+N G+ PD +T VLSAC H G +
Sbjct: 392 MRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKD 451
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
G+ + QI I+ Y S +VD A+ G L+ K+ +K
Sbjct: 452 GKRWFNSLTSEFQIIPKIEHY--SCMVDPLARSGHLEEVWDFIEKIPDK 498
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 215/330 (65%), Gaps = 4/330 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTT+I Y+Q K+ +A++ F M+ GI D V + +VL+AC LGA+DLG
Sbjct: 170 MPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLG 229
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V++ G ++ + ++++DMY KCG +++++ VF + EK++ W ++I G A+H
Sbjct: 230 EWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALH 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ MF RM EN+ PN VTF+++LSAC+H GL + GR F M Y I P VEH
Sbjct: 290 GLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEH 349
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A +L+++ + NA IWGALL + H + + A+ L+ LE
Sbjct: 350 YGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIELE 409
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNNSG LL N++AE RW +V+K+R AM+E G+ + PG+S IE++ V++F + D S
Sbjct: 410 PNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGL-RNVPGASSIEVDGMVHEFTSRDWS 468
Query: 301 HPASDEIYSSLSKLDEQLK---LASYVPEL 327
HP I L ++D +K AS PE+
Sbjct: 469 HPFIHTICEVLCEIDTNMKSVGFASVFPEV 498
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV + ++ Y K G + +F + E+N+ W ++I G A +A+ +F RM
Sbjct: 143 DVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQ 202
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
E +E +GV +SVL+AC G V+ G RF+ + E+ ++D+ K G
Sbjct: 203 VEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRR---GLCQEIPLMNSIIDMYMKCG 259
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+E A+E+ + + + V W L+ G LH
Sbjct: 260 CIEKAVEVFEGME-EKSVVTWTTLIAGFALH 289
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 209/328 (63%), Gaps = 3/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALD 58
+P +D+ISW T+I+ Y+QN EA++ +N M+ G IS +Q T +VL AC+ GAL
Sbjct: 410 LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALR 469
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++H +++ G +DV++G++L DMY KCG LD +L +F+++ N WN++I
Sbjct: 470 QGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHG 529
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG +A+ +F M+ E V+P+ +TF+++LSAC+H+GLV+EG F M Y ITP +
Sbjct: 530 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSL 589
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HYGCMVDL +AG LE AL I+S QP+A IWGALL C++H N+++ IA L
Sbjct: 590 KHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFE 649
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP + GY LL NMYA +W V +IR G+ K PG S +E++ KV F +
Sbjct: 650 VEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRK-TPGWSSMEVDNKVEVFYTGN 708
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPE 326
++HP +E+Y L+ L E+LK+ YVP+
Sbjct: 709 QTHPMYEEMYRELTALHEKLKMVGYVPD 736
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 13/258 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N+Q A+ F EM+ S I PD +T+ ++ S + LG +
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRAC 367
Query: 61 REIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + + ++ G+ + D+ IG+A+V MYAK G +D + VF L K++ WN+II G A
Sbjct: 368 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQ 427
Query: 120 HGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSI 174
+GFA EA+ M++ M E + N T++SVL AC+ AG + +G + R L +
Sbjct: 428 NGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN----GL 483
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
+V + D+ K G L+DAL L + N+V W L+ H + E A +
Sbjct: 484 YLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFK 542
Query: 235 ELMI--LEPNNSGYCTLL 250
E++ ++P++ + TLL
Sbjct: 543 EMLDEGVKPDHITFVTLL 560
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ Y Q+ +EAL + ++ + D VT+ ++LSAC G + G
Sbjct: 211 MPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y ++ G + ++++ + L+D+YA+ GSL VF ++ ++L WNSII+ ++
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A+ +F M ++P+ +T IS+ S + G + R + ++ G+ + ++
Sbjct: 327 EQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFL-EDIT 385
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPN--AVIWGALLGG 219
+V + +K GL++ A + + PN + W ++ G
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVF---NWLPNKDVISWNTIISG 424
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 137/267 (51%), Gaps = 16/267 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFN-EMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+ +W MI+ Y + E + F+ M +SG+ PD T +VL AC ++ G +
Sbjct: 115 RDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNK 171
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++ GF DVY+ ++L+ +Y + G++ + ++F ++ +++ WN++I G G
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGN 231
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A EAL + D + + VT +S+LSACT AG G S + + + E+
Sbjct: 232 AKEALTLSDGL----RAMDSVTVVSLLSACTEAGDFNRG-VTIHSYSIKHGLESELFVSN 286
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
++DL ++ G L+D ++ + + + W +++ +L+ A + E+ + ++
Sbjct: 287 KLIDLYAEFGSLKDCQKVF-DRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQ 345
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIR 267
P+ C L+++ + +S+ E+ R
Sbjct: 346 PD----CLTLISLASILSQLGEIRACR 368
>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
Length = 901
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 212/328 (64%), Gaps = 4/328 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW +MI ++N ++A++ F+++ NSG+ PD + ++VLSACA GA G
Sbjct: 245 MPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYG 304
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + ++G +++ + S+LVDMYAKCG +D ++ +F ++ ++ WN++I GLA H
Sbjct: 305 MWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFMTIKRNHVSVWNTMIGGLAAH 364
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ F M E + P+GVTF+++L+AC+H+G+VEE R+ F +MT YSITP +EH
Sbjct: 365 GLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAMTTKYSITPRIEH 424
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVD LS+AGLL++A +L+++ +P+AVIW ALL C +R ++ I V E+
Sbjct: 425 YGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKLGEITVKEIAF-- 482
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
SG TLL N+Y+ +RW + ++ K+ GI K G SW+E+ R ++F A D+S
Sbjct: 483 -QGSGDYTLLSNIYSSANRWEDSEEVWKERKKKGIRK-SKGLSWVELGRSTHEFKAGDRS 540
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP +D IY L +L + K Y+P E
Sbjct: 541 HPDTDGIYKVLHRLSNKAKSEGYIPLTE 568
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 2 PARDIISWTTMITCYSQNKQFRE-ALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
P R I +T I S K E +L +N M + + PD T +L ACA +
Sbjct: 110 PVRAIFPYTNAILRASLEKGSPEKSLTDYNSMLRFTAFCPDYRTYVLLLKACAKCSNIYA 169
Query: 60 GREIHLYVMQIG---------------------------------FDIDVYIGSALVDMY 86
EIH +++++G + + + G+ ++ +
Sbjct: 170 IMEIHSHLVKLGLLSNQRIVTHLFKLYIDHGRVMEACKLFWLMLEWSAEPFYGNLMLMGF 229
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
KCG +D++ +F ++ K+L WNS+I G A + +A+ +F +++ + P+G +F
Sbjct: 230 LKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFS 289
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSS 204
SVLSAC AG G M + E+ H +VD+ +K G ++ A+ + +
Sbjct: 290 SVLSACAQAGARCYGMWVHQLMA---ELGLEMNHILSSSLVDMYAKCGRIDVAIGIFMTI 346
Query: 205 KFQPNAVIWGALLGGCKLH 223
K + + +W ++GG H
Sbjct: 347 K-RNHVSVWNTMIGGLAAH 364
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 204/325 (62%), Gaps = 7/325 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +I Y+QN + EAL F +K + P + A +L ACA L L LG
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 61 REIHLYVMQIGFDI------DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
+ H++V++ GF D+++G++L+DMY KCG ++ LVF K+ E++ WN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G+ +EAL +F M+ +P+ +T I VLSAC HAG VEEGR F SMT + +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CMVDLL +AG LE+A +I QP++VIWG+LL CK+HRN+ +
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L+ +EP+NSG LL NMYAE+ +W +V +R +M++ G+ K+ PG SWI+++ + F
Sbjct: 586 KLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQ-PGCSWIKIQGHDHVF 644
Query: 295 AASDKSHPASDEIYSSLSKLDEQLK 319
DKSHP +I+S L L +++
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEMR 669
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 114/197 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +W +M++ ++Q+ + EAL F M G ++ + A+VLSAC+ L ++ G
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG 171
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + F DVYIGSALVDMY+KCG+++ + VF ++ ++N+ WNS+I +
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F M+ VEP+ VT SV+SAC ++ G+ + + ++
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 181 YGCMVDLLSKAGLLEDA 197
VD+ +K +++A
Sbjct: 292 SNAFVDMYAKCSRIKEA 308
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW ++ITC+ QN EALD F M S + PD+VT+A+V+SACA L A+ +G
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKC------------------------------ 89
+E+H V++ D+ + +A VDMYAKC
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332
Query: 90 -GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
S + L+F K+ E+N+ WN++I G +G EAL++F + E+V P +F ++
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392
Query: 149 LSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHY----GCMVDLLSKAGLLEDALELIRS 203
L AC + G + + + G+ E ++D+ K G +E+ + R
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR- 451
Query: 204 SKFQPNAVIWGALLGG 219
+ + V W A++ G
Sbjct: 452 KMMERDCVSWNAMIIG 467
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 36/211 (17%)
Query: 40 DQVTMATVLSAC--AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
D A +L +C + L A+ + R +H V++ GF +++I + L+D Y+KCGSL+
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76
Query: 98 VFFKLREKNLFCWNSIIEGLA--------------------------VHGFAH-----EA 126
VF K+ ++N++ WNS++ GL V GFA EA
Sbjct: 77 VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L F M E N +F SVLSAC+ + +G + S+ +V +VD
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG-VQVHSLIAKSPFLSDVYIGSALVD 195
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ SK G + DA + + N V W +L+
Sbjct: 196 MYSKCGNVNDA-QRVFDEMGDRNVVSWNSLI 225
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MPAR+++SWTT+I Y+Q KQ EA++ F M+ GI PD V + +VLSAC LGA+DL
Sbjct: 161 MPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDL 220
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H +V++ G + + +A++DMY K G + +++ VF + +K++ W ++I G A+
Sbjct: 221 GEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFAL 280
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ MF RM ENV PN VTF+++LSAC+H GL + GR F M Y I VE
Sbjct: 281 HGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVE 340
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG L +A +L++ F+ NA IWGALL + H + E+ A+ L+ L
Sbjct: 341 HYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDAELGKQALLHLIEL 400
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YAE RW +V+K+R MK+ G+ + PG+S IE++ V++F + D
Sbjct: 401 EPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGL-RNVPGASSIEVDGMVHEFTSRDG 459
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +I L ++ +K S+V L L
Sbjct: 460 SHPCLHKICKVLCEITTDMKSISFVALLPEAL 491
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 48/225 (21%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG ++H +++ G D ++ ++L+ Y CG + + VF + +K++FCWN +I G
Sbjct: 87 LGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYV 146
Query: 119 VHG--------------------------FAH-----EALAMFDRM-IYENVEPNGVTFI 146
G +A EA+ +F RM + E +EP+GV +
Sbjct: 147 KSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALL 206
Query: 147 SVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
SVLSAC G V+ G RF+ + ++ ++D+ K G + A+E+
Sbjct: 207 SVLSACGDLGAVDLGEWVHRFVVRR---GLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGM 263
Query: 205 KFQPNAVIWGALLGGCKLH----------RNLEIAHIAVNELMIL 239
Q + V W ++ G LH R +E+ ++A N++ L
Sbjct: 264 D-QKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFL 307
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 215/325 (66%), Gaps = 2/325 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++DI+SWT+MITC N EAL+ F +K + I PD + + + LSA A+L +L G+E
Sbjct: 512 SKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKE 571
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++++ GF ++ I S+LVDMYA CG+++ S +F +++++L W S+I +HG
Sbjct: 572 IHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGC 631
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+EA+A+F +M ENV P+ +TF+++L AC+H+GL+ EG+R F M GY + P EHY
Sbjct: 632 GNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA 691
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLLS++ LE+A + +RS +P++ +W ALLG C +H N E+ +A EL+ +
Sbjct: 692 CMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTK 751
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSG L+ N++A RW +V ++R+ MK G++K PG SWIE++ K++ F A DKSHP
Sbjct: 752 NSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKN-PGCSWIEVDNKIHTFMARDKSHP 810
Query: 303 ASDEIYSSLSKLDEQL-KLASYVPE 326
+D+IY L++ + L K Y+ +
Sbjct: 811 QTDDIYLKLAQFTKLLGKKGGYIAQ 835
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW T+++ QN+ +R+AL+ F +M+NS PDQV++ +++A G L G
Sbjct: 309 MLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y ++ G D ++ IG+ L+DMYAKC + F + EK+L W +II G A +
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA+ +F ++ + ++ + + SVL AC+ GL R F+ GY ++
Sbjct: 429 ECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLAD 483
Query: 181 ---YGCMVDLLSKAG---LLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
+V++ + G A E IRS + V W +++ C +H L +
Sbjct: 484 IMLQNAIVNVYGEVGHRDYARRAFESIRSK----DIVSWTSMITCC-VHNGLPV 532
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 125/225 (55%), Gaps = 7/225 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWTT+I Y+QN+ EA++ F +++ G+ D + + +VL AC+ L + +
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFI 469
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH YV + D+ + +A+V++Y + G D + F +R K++ W S+I +
Sbjct: 470 REIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHN 528
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G EAL +F + N++P+ + IS LSA + +++G+ FL + G+ + +
Sbjct: 529 GLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL-IRKGFFLEGPI 587
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ + G +E++ ++ S K Q + ++W +++ +H
Sbjct: 588 A--SSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R I +W M+ + + ++ EA++ + EM+ G++ D T +VL AC LG LG
Sbjct: 105 MTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
EIH ++ GF V++ +AL+ MY KCG L + ++F + +++ WNSII
Sbjct: 165 AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G EAL++F RM V N TF++ L V+ G + +V
Sbjct: 225 TEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG-MGIHGAALKSNHFADV 283
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + +K G +EDA E + +S + V W LL G
Sbjct: 284 YVANALIAMYAKCGRMEDA-ERVFASMLCRDYVSWNTLLSG 323
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SW ++I+ + + EAL F M+ G++ + T L + LG
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH ++ DVY+ +AL+ MYAKCG ++ + VF + ++ WN+++ GL +
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+AL F M +P+ V+ +++++A +G + G+
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGK 369
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 14/199 (7%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C + AL G+++H +++ + ++ + L+ MY KCGSL ++ VF ++ E+
Sbjct: 52 LLDLCVAVKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RF 165
+F WN+++ G EA+ ++ M V + TF SVL AC G G
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169
Query: 166 LSMTCGYS-----ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW-----GA 215
+++ CG+ + YG D L A +L D + + + N++I G
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGD-LGGARVLFDGIMMEKEDTVSWNSIISAHVTEGK 228
Query: 216 LLGGCKLHRNLEIAHIAVN 234
L L R ++ +A N
Sbjct: 229 CLEALSLFRRMQEVGVASN 247
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 202/325 (62%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW+ MI+ Y+Q++ F EAL F EM+ G+ PD+ + + +SAC HL LDLG
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + ++V + + L+DMY KCG ++ +L VF+ + EK + WN++I GLA++
Sbjct: 423 KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMN 482
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++L MF M PN +TF+ VL AC H GLV +GR F SM + I ++H
Sbjct: 483 GSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKH 542
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL++A ELI S P+ WGALLG C+ HR+ E+ +L+ L+
Sbjct: 543 YGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQ 602
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G+ LL N+YA W V +IR M + G+ K PG S IE V++F A DK+
Sbjct: 603 PDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVK-TPGCSMIEANGTVHEFLAGDKT 661
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP ++I L + +LK+ YVP
Sbjct: 662 HPQINDIEHMLDVVAAKLKIEGYVP 686
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 134/263 (50%), Gaps = 48/263 (18%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW+ M++CY QN+ EAL F EMK SG++ D+V + + LSAC+ + +++GR +
Sbjct: 233 RDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWV 292
Query: 64 HLYVMQIGFDIDVYIGSALVDMYA--------------------------------KCGS 91
H +++G + V + +AL+ +Y+ +CGS
Sbjct: 293 HGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGS 352
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+ + ++F+ + EK++ W+++I G A H EALA+F M V P+ +S +SA
Sbjct: 353 IQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISA 412
Query: 152 CTHAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
CTH ++ G+ R L + S T ++D+ K G +E+ALE+ +
Sbjct: 413 CTHLATLDLGKWIHAYISRNKLQVNVILSTT--------LIDMYMKCGCVENALEVFYAM 464
Query: 205 KFQPNAVIWGALLGGCKLHRNLE 227
+ + W A++ G ++ ++E
Sbjct: 465 E-EKGVSTWNAVILGLAMNGSVE 486
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 5 DIISWTTMITC--YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ +W T++ Y QN +AL + S PD T +L CA + GR+
Sbjct: 68 NTFTWNTIMRAHLYLQNSP-HQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQ 126
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H + + GFD DVY+ + L+++YA CGS+ + VF + +L WN+++ G G
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGE 186
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
EA +F+ M E N + S+++ G VE+ RR F
Sbjct: 187 VEEAERVFEGM----PERNTIASNSMIALFGRKGCVEKARRIF 225
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 50/224 (22%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D++SW T++ Y Q + EA F M P++ T+A+
Sbjct: 167 PVLDLVSWNTLLAGYVQAGEVEEAERVFEGM------PERNTIAS--------------- 205
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLAV 119
++++ ++ + G ++++ +F + RE+++ W++++
Sbjct: 206 ------------------NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQ 247
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ EAL +F M V + V +S LSAC+ VE GR G ++ VE
Sbjct: 248 NEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGR-----WVHGLAVKVGVE 302
Query: 180 HY----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
Y ++ L S G + DA + + + W +++ G
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISG 346
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Query: 71 GFDIDVYIGSALVDMYAKCGSL---DRSLLVFFKLREKNLFCWNSIIEG-LAVHGFAHEA 126
G D Y S L++ + +L SL +F LR N F WN+I+ L + H+A
Sbjct: 30 GLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQA 89
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L + + + +P+ T+ +L C A + E R+ + +V +++
Sbjct: 90 LLHYKLFLASHAKPDSYTY-PILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMN 148
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L + G + A + S + V W LL G
Sbjct: 149 LYAVCGSVGSARRVFEESPVL-DLVSWNTLLAG 180
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 203/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +SW ++I+ +S KQ A F++M G+ PD T ATVL CA++ ++LG++I
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQI 564
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ DVYI S LVDMY+KCG++ S L+F K +++ W+++I A HG
Sbjct: 565 HAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHG 624
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F+ M NV+PN FISVL AC H G V++G F M Y + P +EHY C
Sbjct: 625 EQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSC 684
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++ + +AL+LI S F+ + VIW LL CK+ N+E+A A N L+ L+P +
Sbjct: 685 MVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQD 744
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S LL N+YA V W EV KIR MK ++K PG SWIE+ +V+ F DK+HP
Sbjct: 745 SSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKE-PGCSWIEVRDEVHTFLVGDKAHPR 803
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S+EIY L +++K A YVP++++ML
Sbjct: 804 SEEIYEQTHLLVDEMKWAGYVPDIDSML 831
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +I + QN++ + L F M S + PD T +V+ ACA AL+ G
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH +++ G +D ++GSALVDMY KCG L + + +L EK WNSII G +
Sbjct: 461 MEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQ 520
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ A F +M+ V P+ T+ +VL C + +E G ++ + ++ +V
Sbjct: 521 KQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELG-KQIHAQILKLNLHSDVYI 579
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL- 239
+VD+ SK G ++D+ L+ + + V W A++ H + E A E+ +L
Sbjct: 580 ASTLVDMYSKCGNMQDS-RLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLN 638
Query: 240 -EPNNSGYCTLL 250
+PN++ + ++L
Sbjct: 639 VKPNHTIFISVL 650
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW ++++CY N R++++ F M++ I D T + VL AC+ + LG
Sbjct: 98 MPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLG 157
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +Q+GF+ DV GSALVDMY+KC LD + +F ++ E+NL CW+++I G +
Sbjct: 158 LQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQN 217
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
E L +F M+ + + T+ SV +C AGL
Sbjct: 218 DRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC--AGL 252
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++ W+ +I Y QN +F E L F +M G+ Q T A+V +CA L A LG
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F D IG+A +DMYAKC + + VF L +N+II G A
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQ 318
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEVE 179
+AL +F + + + ++ L+AC+ G +E + L++ CG V
Sbjct: 319 DQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVA 378
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++D+ K G L +A + + + +AV W A++
Sbjct: 379 N--TILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAA 415
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 125/256 (48%), Gaps = 16/256 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R S+ +I Y++ Q +AL+ F ++ + +S D+++++ L+AC+ + G
Sbjct: 303 PPRQ--SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGI 360
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H ++ G ++ + + ++DMY KCG+L + +F + ++ WN+II +
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNE 420
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-----HAGLVEEGRRRFLSMTCGYSITP 176
+ L++F M+ +EP+ T+ SV+ AC + G+ GR M + +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVG- 479
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+VD+ K G+L +A E I + V W +++ G + E A +++
Sbjct: 480 -----SALVDMYGKCGMLMEA-EKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQM 533
Query: 237 --MILEPNNSGYCTLL 250
M + P+N Y T+L
Sbjct: 534 LEMGVIPDNFTYATVL 549
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 39/213 (18%)
Query: 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF 100
+ T + +L C++L AL+ G++ H ++ F +Y+ + LV Y K +++ + VF
Sbjct: 6 KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
++ +++ WN++I G A G A ++FD M +V V++ S+LS H G+ +
Sbjct: 66 RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDV----VSWNSLLSCYLHNGVNRK 121
Query: 161 G-----RRRFLSMTCGYSI-------TPEVEHYG----------------------CMVD 186
R R L + Y+ +E YG +VD
Sbjct: 122 SIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ SK L+ A + R + N V W A++ G
Sbjct: 182 MYSKCKKLDGAFRIFREMP-ERNLVCWSAVIAG 213
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD ++W+ MI Y+ + +A+ F EM+ + P+ +VL ACAH+G +D G
Sbjct: 604 PKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKG- 662
Query: 62 EIHLY-VMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+H + +MQ + +D ++ S +VD+ + ++ +L + + E + W +++
Sbjct: 663 -LHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNC 721
Query: 118 AVHGFAHEALAMFDRMI 134
+ G A F+ ++
Sbjct: 722 KMQGNVEVAEKAFNSLL 738
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 208/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW +I ++ K +A F EM + PD T A VL ACA+L ++ LG++I
Sbjct: 543 QTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQI 602
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ DVYI S LVDMY+KCG++ S LVF K K+ WN++I G A HG
Sbjct: 603 HGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLG 662
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL F+RM ENV PN TF+S+L AC H G +++G F +M Y + P++EHY C
Sbjct: 663 EEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSC 722
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M+D++ ++G + +AL+LI+ F+ +AVIW LL CK+H N+EIA A N ++ LEP +
Sbjct: 723 MIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPED 782
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S C LL N+YA+ W +V+++R M+ ++K PG SWIE++ +V+ F +K+HP
Sbjct: 783 SSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKE-PGCSWIEVKDEVHAFLVGNKTHPR 841
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+EIY LS L +++K Y+P+++ ++
Sbjct: 842 YEEIYKILSVLLDEMKWIGYIPDIDFLI 869
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 130/253 (51%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +I + QN E L+ F M + PDQ T +VL AC+ AL+ G
Sbjct: 439 MERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSG 498
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH +++ G +D ++G AL+DMY KCG ++ + + ++ ++ + WN+II G +
Sbjct: 499 MEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLL 558
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ +A + F M+ +V+P+ T+ VL AC + V G ++ + +V
Sbjct: 559 KHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLG-KQIHGQIIKLELHSDVYI 617
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+VD+ SK G ++D+ L+ + V W A++ G H E A + E M LE
Sbjct: 618 TSTLVDMYSKCGNMQDS-ALVFEKAPNKDFVTWNAMICGYAQHGLGEEA-LGYFERMQLE 675
Query: 241 ---PNNSGYCTLL 250
PN++ + ++L
Sbjct: 676 NVRPNHATFVSIL 688
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 5/221 (2%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLG 60
P RD++SW +M++ + QN + R+++D F +M ++ + DQ T A VL AC+ L LG
Sbjct: 136 PKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLG 195
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++++GF DV GSAL+DMYAKC LD SL +F ++ KN CW++II G +
Sbjct: 196 IQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQN 255
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVE 179
L +F M + + + SV +C ++ G + ++ C + ++
Sbjct: 256 DEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFG--SDIT 313
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+D+ +K G L DA + I +S + + + A++ GC
Sbjct: 314 VGTATLDMYAKCGSLADA-QRIFNSLPKHSLQCYNAIIVGC 353
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ + W+ +I QN + L+ F EM+ GI Q A+V +CA L AL +G
Sbjct: 237 IPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVG 296
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F D+ +G+A +DMYAKCGSL + +F L + +L C+N+II G +
Sbjct: 297 TQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRN 356
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL F ++ + N ++ SAC +G R+ S++ ++ +
Sbjct: 357 EKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDG-RQLHSLSVKSTLRSNICV 415
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELMI 238
++D+ K L +A + + + +AV W A++ + + N E + A +
Sbjct: 416 ANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLR 474
Query: 239 LEPNNSGYCTLL 250
+EP+ Y ++L
Sbjct: 475 MEPDQFTYGSVL 486
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 130/256 (50%), Gaps = 12/256 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHL-GALDL 59
+P + + +I +N++ EAL F + SG+ ++++++ SACA + G LD
Sbjct: 338 LPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD- 396
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR++H ++ ++ + ++++DMY KC +L + +F ++ ++ WN++I
Sbjct: 397 GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQ 456
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG---RRRFLSMTCGYSITP 176
+G E L +F M+ +EP+ T+ SVL AC+ + G R + G +
Sbjct: 457 NGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK--SGLGLDS 514
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
V G ++D+ K G++E+A + I Q V W A++ G L ++ E AH E+
Sbjct: 515 FVG--GALIDMYCKCGMIEEA-KKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEM 571
Query: 237 --MILEPNNSGYCTLL 250
M ++P+N Y +L
Sbjct: 572 LKMSVKPDNFTYAIVL 587
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D ++W MI Y+Q+ EAL F M+ + P+ T ++L ACAH+G +D G
Sbjct: 642 PNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKG- 700
Query: 62 EIHLY---VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+H + + + G + + S ++D+ + G + +L + ++ E + W +++
Sbjct: 701 -LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSIC 759
Query: 118 AVHG 121
+HG
Sbjct: 760 KIHG 763
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 33 KNSGISPDQV-TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
+N P ++ T + ++ C+ +L G++ H ++ GF DVYI + L+ MY +C
Sbjct: 34 QNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSH 93
Query: 92 LDRSLLVFFKLREKNLF-------------------------------CWNSIIEGLAVH 120
L+ + VF K+ ++++ WNS++ G +
Sbjct: 94 LNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQN 153
Query: 121 GFAHEALAMF-DRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPE 177
G +++ +F D E V + TF VL AC+ ++E+G + + +
Sbjct: 154 GECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACS---VLEDGGLGIQVHGLIVRMGFYKD 210
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
V ++D+ +K L+D+L++ + N V W A++ GC
Sbjct: 211 VVTGSALLDMYAKCKRLDDSLKIFSEIPVK-NWVCWSAIIAGC 252
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 213/330 (64%), Gaps = 1/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D ++W+ MI Y++ A+ F EM+ +G+ PD++TM +VLSACA LGAL+LG+
Sbjct: 294 PVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGK 353
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ Y+ + V + +AL+DM+AKCG +DR++ VF +++ + + W S+I GLA+HG
Sbjct: 354 WLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHG 413
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EA+ +FD M+ + V+P+ V FI VLSAC+H+GLV++G F +M +SI P++EHY
Sbjct: 414 RGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHY 473
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVD+LS+AG + +ALE +R+ +PN VIW +++ C L++ EL+ EP
Sbjct: 474 GCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREP 533
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
++ LL N+YA++ RW + TK+R M G+ K PGS+ IEM ++Y+F A DKSH
Sbjct: 534 SHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRK-IPGSTMIEMNNEIYEFVAGDKSH 592
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
EIY + ++ ++K A YVP +L
Sbjct: 593 DQYKEIYEMVEEMGREIKRAGYVPTTSQVL 622
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 12/258 (4%)
Query: 2 PARDIISWTTMITCYSQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P+ D + T+I ++Q + AL +N M+ +SP++ T VL ACA + L+LG
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC---GSLD--RSLLVFFKLREKNLFCWNSIIE 115
+H +++ GF+ D ++ + LV MY C GS + VF + K+ W+++I
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIG 306
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G A G + A+ +F M V P+ +T +SVLSAC G +E G + S +I
Sbjct: 307 GYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKNIM 365
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN 234
VE ++D+ +K G ++ A+++ R K + V W +++ G +H R LE A + +
Sbjct: 366 RSVELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVSWTSMIVGLAMHGRGLE-AVLVFD 423
Query: 235 ELMI--LEPNNSGYCTLL 250
E+M ++P++ + +L
Sbjct: 424 EMMEQGVDPDDVAFIGVL 441
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R I+SWT+MI + + + EA+ F+EM G+ PD V VLSAC+H G +D G
Sbjct: 394 MKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKG 453
Query: 61 REIHLY--VMQIGFDIDVYIG--SALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIE 115
H Y M+ F I I +VDM ++ G ++ +L V E N W SI+
Sbjct: 454 ---HYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVT 510
Query: 116 GLAVHG 121
G
Sbjct: 511 ACHARG 516
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 207/325 (63%), Gaps = 2/325 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++ WTT+I Y++ REA + + +M+ +G+ PD + ++L+ACA G L LG+
Sbjct: 277 PVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGK 336
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
IH + + F + +A +DMYAKCG LD + VF + +K++ WNS+I+G A+H
Sbjct: 337 RIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMH 396
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ E EP+ TF+ +L ACTHAGLV EGR+ F SM Y I P+VEH
Sbjct: 397 GHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEH 456
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL + G L++A L+RS +PNA+I G LL C++H ++++A +L LE
Sbjct: 457 YGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLE 516
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G +LL N+YA+ W V +R+ MK G EK G+S IE+E +V++F D+S
Sbjct: 517 PSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPS-GASSIEVEEEVHEFTVFDQS 575
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP SD+IY + +L + L+ YVP
Sbjct: 576 HPKSDDIYQMIDRLVQDLRQVGYVP 600
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 13/222 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ + ++I ++ N R +AF +M+ +G+ PD T +L AC+ +L L
Sbjct: 79 VPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPL 138
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFKLREKNLFCWNSIIEGL 117
R IH +V +IGF D+++ ++L+D Y++CG+ LD ++ +F + E+++ WNS+I GL
Sbjct: 139 VRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGL 198
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G A +FD M ++ V++ ++L AG ++ F M ++
Sbjct: 199 VRCGELQGACKLFDEMPDRDM----VSWNTMLDGYAKAGEMDTAFELFERMPWRNIVS-- 252
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ MV SK G ++ A L + N V+W ++ G
Sbjct: 253 ---WSTMVCGYSKGGDMDMARMLFDRCPVK-NVVLWTTIIAG 290
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 25/259 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W +MI + + + A F+EM + D V+ T+L A G +D
Sbjct: 183 MEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDR----DMVSWNTMLDGYAKAGEMDTA 238
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ + ++ S +V Y+K G +D + ++F + KN+ W +II G A
Sbjct: 239 FELFERMPWR----NIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEK 294
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-----TCGYSIT 175
G A EA ++ +M + P+ +S+L+AC +G++ G+R SM CG +
Sbjct: 295 GLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVL 354
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHI 231
+D+ +K G L+ A ++ + + V W +++ G +H + LE+
Sbjct: 355 ------NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSW 408
Query: 232 AVNELMILEPNNSGYCTLL 250
V E EP+ + LL
Sbjct: 409 MVQE--GFEPDTYTFVGLL 425
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW +MI ++ + +AL+ F+ M G PD T +L AC H G ++ G
Sbjct: 378 MAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEG 437
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R+ + Y M+ + I V ++D+ + G L + ++ + E N +++
Sbjct: 438 RK-YFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNAC 496
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+H A A+ +++ +EP+ S+LS
Sbjct: 497 RMHNDVDLARAVCEQLF--KLEPSDPGNYSLLS 527
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W MI Y+QN EAL F M + P++VT+ +VLSAC LGAL+ G
Sbjct: 163 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 222
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ G +V++G+ALVDMY+KCGSL+ + LVF K+ +K++ WNS+I G A+
Sbjct: 223 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMX 282
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ EAL +F M + P +TFI +LSAC H+G V EG F M Y I P++EH
Sbjct: 283 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 342
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMV+LL +AG +E A EL+++ +P+ V+WG LLG C+LH + + V L+
Sbjct: 343 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 402
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL N+YA V W V ++R MK+ G++K PG S IE+ KV++F A +
Sbjct: 403 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKE-PGCSSIEVNNKVHEFLAGGLN 461
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY L +++ LK Y P+ + +L
Sbjct: 462 HPKRKEIYMMLEEINGWLKSHGYTPQTDIVL 492
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 37/245 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+ WT +I ++ +AL+ + +M G+ P+ T +++L C ++ G+ +H
Sbjct: 40 VFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHS 95
Query: 66 YVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLDR 94
+++GFD D+Y+ + L+D+YA K G LD
Sbjct: 96 QAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDA 155
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ ++F + E++ CWN +I+G +G +EAL +F RM+ +PN VT +SVLSAC
Sbjct: 156 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 215
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G +E G R S I V +VD+ SK G LEDA L+ + V W
Sbjct: 216 LGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWN 273
Query: 215 ALLGG 219
+++ G
Sbjct: 274 SMIVG 278
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YA G LD S+ +F + + ++F W +II G A+ G +AL + +M+ + VEPN TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
S+L C +E G+ ++ + G DL + GLL+
Sbjct: 79 SSILKLCP----IEPGK----------ALHSQAVKLGFDSDLYVRTGLLD 114
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDI+SW MI Y+QN AL +M+ G+ ++ + ++L+AC+ AL+ G
Sbjct: 749 MPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEG 808
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++ DV +G+AL+ MYAKCGSL+ + VF EKN+ WN++I A H
Sbjct: 809 KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQH 868
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL F+ M E ++P+G TF S+LSAC H+GLV EG R F S+ + ++P +EH
Sbjct: 869 GLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEH 928
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+V LL +AG ++A LI F P+A +W LLG C++H N+ +A A N + L
Sbjct: 929 YGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLN 988
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YA RW +V KIR M+ GI K PG SWIE++ +++F A+D+S
Sbjct: 989 ARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKE-PGRSWIEVDNIIHEFIAADRS 1047
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY L +L +++ A Y P+ + +L
Sbjct: 1048 HPETAEIYEELKRLSLEMERAGYSPDTQYVL 1078
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 8/220 (3%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
ARDIISW +MI ++Q+ + A F EMK G+ PD++T A+VL C + AL+LGR+
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH+ +++ G +DV +G+AL++MY +CGSL + VF LR +N+ W ++I G A G
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHY 181
+A +F +M + +P TF S+L AC + ++EG++ + GY + V +
Sbjct: 669 DRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN- 727
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVI--WGALLGG 219
++ SK+G + DA ++ PN I W ++ G
Sbjct: 728 -ALISAYSKSGSMTDARKVFDK---MPNRDIMSWNKMIAG 763
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 125/220 (56%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW +I Y++ + EA+ + +M++ G+ P +VT +LSAC + A G
Sbjct: 446 MPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG 505
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH +++ G + ++ +AL++MY +CGS+ + VF R +++ WNS+I G A H
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G A +F M E +EP+ +TF SVL C + +E GR+ L + G + +V
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL--DVN 623
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++++ + G L+DA E+ S + + N + W A++GG
Sbjct: 624 LGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGG 662
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 121/220 (55%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++SWT MI ++ + R+A + F +M+N G P + T +++L AC LD G+++
Sbjct: 651 RNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKV 710
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+++ G+++D +G+AL+ Y+K GS+ + VF K+ +++ WN +I G A +G
Sbjct: 711 IAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLG 770
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL +M + V N +F+S+L+AC+ +EEG+R + + +V
Sbjct: 771 GTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIV-KRKMQGDVRVGAA 829
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + +K G LE+A E+ + + N V W A++ H
Sbjct: 830 LISMYAKCGSLEEAQEVFDNFT-EKNVVTWNAMINAYAQH 868
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 136/250 (54%), Gaps = 4/250 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ + +I +Q+ + EA + + +M++ G+ ++ T +VL+AC+ AL G I
Sbjct: 348 RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELI 407
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ ++G DV IG++L+ MYA+CG L R+ +F + +++L WN+II G A
Sbjct: 408 HSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDR 467
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ ++ +M E V+P VTF+ +LSACT++ +G+ + I
Sbjct: 468 GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANA 526
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEP 241
++++ + G + +A + ++ + + + W +++ G H + E A+ E+ LEP
Sbjct: 527 LMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEP 585
Query: 242 NNSGYCTLLL 251
+ + ++L+
Sbjct: 586 DKITFASVLV 595
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 99/163 (60%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW ++I+CY+Q ++A F EM+ +G P ++T ++L+AC L+ G
Sbjct: 143 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYG 202
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ G+ D + ++L++MY KC L + VF + +++ +N+++ A
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQK 262
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ E + +F +M E + P+ VT+I++L A T +++EG+R
Sbjct: 263 AYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKR 305
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 4/217 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++S+ TM+ Y+Q E + F +M + GI PD+VT +L A LD G+ I
Sbjct: 247 RDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G + D+ +G+AL M+ +CG + + ++++ +N++I LA HG
Sbjct: 307 HKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHY 366
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYG 182
EA + +M + V N T++SVL+AC+ + + G ++ G+S +V+
Sbjct: 367 EEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHS--SDVQIGN 424
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + ++ G L A EL + + + + W A++ G
Sbjct: 425 SLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 18 QNKQFR--EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
+++Q R E D N + ++ ++ C +L + IH +++ G D
Sbjct: 57 RDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPD 116
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
+++ + L++MY KC S+ + VF K+ +++ WNS+I A GF +A +F+ M
Sbjct: 117 IFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQT 176
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLL 194
P+ +T+IS+L+AC +E G++ + GY P V++ LL+ G
Sbjct: 177 AGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN-----SLLNMYGKC 231
Query: 195 ED--ALELIRSSKFQPNAVIWGALLG 218
ED + + S ++ + V + +LG
Sbjct: 232 EDLPSARQVFSGIYRRDVVSYNTMLG 257
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 210/319 (65%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ W ++ Y QNKQ +EA+ F+EM+ S + P+++TM +LSAC+ LGAL++G
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMG 375
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + + V +G++LVDMYAKCG++ +++ +F ++ +KN W ++I GLA H
Sbjct: 376 MWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANH 435
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA+ F RMI ++P+ +TFI VLSAC HAGLV+EGR+ F M Y + +++H
Sbjct: 436 GHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKH 495
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++A +L+ + P+AV+WGAL C++H N+ + A +L+ L+
Sbjct: 496 YSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELD 555
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL NMYAE + + K+RV M+ LG+EK PG S IE+ V++F DKS
Sbjct: 556 PSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEK-VPGCSCIELNGVVHEFIVKDKS 614
Query: 301 HPASDEIYSSLSKLDEQLK 319
H + IY L + Q+K
Sbjct: 615 HLDTIAIYDCLHGITLQMK 633
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 53/264 (20%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDL 59
PARD++SW T+I Y ++ REAL+ F + G + PD+VTM +S CA +G L+L
Sbjct: 183 PARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLEL 242
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD-------------------------- 93
G+ +H +V G V + +A++DMY KCGSL+
Sbjct: 243 GKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHAR 302
Query: 94 -----RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+ ++F ++ E+++F WN+++ G + EA+A+F M V+PN +T +++
Sbjct: 303 LGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNL 362
Query: 149 LSACTHAGLVEEG---------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
LSAC+ G +E G + +LS+ G S +VD+ +K G ++ A+
Sbjct: 363 LSACSQLGALEMGMWVHHYIDRHQLYLSVALGTS----------LVDMYAKCGNIKKAIC 412
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ + NA+ W A++ G H
Sbjct: 413 IFKEIP-DKNALTWTAMICGLANH 435
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
+S PD +T +L ACA L G + +V ++GF DV++ +A V ++ GS+
Sbjct: 114 SSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMV 173
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSA 151
+ +F + +++ WN++I G G EAL +F R++ + V P+ VT I +S
Sbjct: 174 LARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSG 233
Query: 152 CTHAGLVEEGRR 163
C G +E G+R
Sbjct: 234 CAQMGDLELGKR 245
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISWT +I ++ +AL+ F++M+ SG++ D V++ VL+ACA LGAL LG
Sbjct: 187 MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +VM F ++ I ++L+DMY++CG ++ + VF K+ ++ L WNSII G AV+
Sbjct: 247 LWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVN 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA E+L F M E +P+GV++ L+AC+HAGLV +G F +M + ITP +EH
Sbjct: 307 GFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL +AG LEDAL +I +PN V+ G+LL C+ H ++ +A + L L+
Sbjct: 367 YGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLD 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P Y LL N+YA + +W +R MK G++K+ PG S +E++ KV++F A D
Sbjct: 427 PEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKK-PGYSSVEIDGKVHEFVAGDNY 485
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +D IYS L L +LK+ YVP + +L
Sbjct: 486 HADADNIYSMLDLLCHELKVCGYVPGSDTIL 516
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 43/254 (16%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA--LDLGREI 63
I+ WT+ + Y +N Q EA F M+ +G+ P+ +T T+LSACA + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 64 HLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS---------- 112
H Y + G D V +G+AL+DMY+KC L + VF+ L KN WN+
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 113 ---------------------IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+I GL HG++ +AL F +M V + V+ I+VL+A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 152 CTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA----LELIRSSK 205
C G + G RF+ ++ ++D+ S+ G +E A +++ + +
Sbjct: 237 CADLGALTLGLWVHRFVMPQ---EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTL 293
Query: 206 FQPNAVIWGALLGG 219
N++I G + G
Sbjct: 294 VSWNSIIVGFAVNG 307
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 204/328 (62%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +SW ++I+ +S KQ A F++M GI PD T ATVL CA++ ++LG++I
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQI 564
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ DVYI S LVDMY+KCG++ S L+F K +++ W+++I A HG
Sbjct: 565 HAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLG 624
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F+ M NV+PN FISVL AC H G V++G F M Y + P++EHY C
Sbjct: 625 EKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSC 684
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++G + +AL+LI S F+ + VIW LL CK+ N+E+A A N L+ L+P +
Sbjct: 685 MVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQD 744
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S LL N+YA V W EV K+R MK ++K PG SWIE+ +V+ F DK+HP
Sbjct: 745 SSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKE-PGCSWIEVRDEVHTFLVGDKAHPR 803
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S+EIY L +++K A YVP+++ ML
Sbjct: 804 SEEIYEQTHLLVDEMKWAGYVPDIDFML 831
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 129/252 (51%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +I + QN++ + L F M S + PD T +V+ ACA AL+ G
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH +++ G +D ++GSALVDMY KCG L + + +L EK WNSII G +
Sbjct: 461 TEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQ 520
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ A F +M+ + P+ T+ +VL C + +E G ++ + + +V
Sbjct: 521 KQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELG-KQIHAQILKLQLHSDVYI 579
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL- 239
+VD+ SK G ++D+ L+ + + V W A++ H E A E+ +L
Sbjct: 580 ASTLVDMYSKCGNMQDS-RLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLN 638
Query: 240 -EPNNSGYCTLL 250
+PN++ + ++L
Sbjct: 639 VKPNHTIFISVL 650
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW ++++CY N R++++ F M++ I D T A +L AC+ + LG
Sbjct: 98 MPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLG 157
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +Q+GF+ DV GSALVDMY+KC LD + VF ++ E+NL CW+++I G +
Sbjct: 158 LQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQN 217
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
E L +F M+ + + T+ SV +C AGL
Sbjct: 218 DRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC--AGL 252
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++ W+ +I Y QN +F E L F +M G+ Q T A+V +CA L A LG
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F D IG+A +DMYAKC + + VF L +N+II G A
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQ 318
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVE 179
+AL +F + N+ + ++ L+AC+ EG + L++ CG V
Sbjct: 319 DQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVA 378
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++D+ K G L +A LI + +AV W A++
Sbjct: 379 N--TILDMYGKCGALMEAC-LIFEEMERRDAVSWNAIIAA 415
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 126/256 (49%), Gaps = 16/256 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R S+ +I Y++ Q +ALD F ++ + + D+++++ L+AC+ + G
Sbjct: 303 PPRQ--SYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGI 360
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H ++ G ++ + + ++DMY KCG+L + L+F ++ ++ WN+II +
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNE 420
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-----HAGLVEEGRRRFLSMTCGYSITP 176
+ L++F M+ +EP+ T+ SV+ AC + G GR M + +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG- 479
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+VD+ K G+L +A E I + + V W +++ G + E A +++
Sbjct: 480 -----SALVDMYGKCGMLMEA-EKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQM 533
Query: 237 --MILEPNNSGYCTLL 250
M + P+N Y T+L
Sbjct: 534 LEMGIIPDNYTYATVL 549
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 39/213 (18%)
Query: 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF 100
++T + +L C++L AL+ G+++H ++ GF +Y+ + L+ Y K ++ + VF
Sbjct: 6 KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
++ ++++ WN++I G A G A ++FD M +V V++ S+LS H G+ +
Sbjct: 66 RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDV----VSWNSLLSCYLHNGVNRK 121
Query: 161 G-----RRRFLSMTCGYSI-------TPEVEHYG----------------------CMVD 186
R R L + Y+ +E YG +VD
Sbjct: 122 SIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ SK L+DA + R + N V W A++ G
Sbjct: 182 MYSKCKKLDDAFRVFREMP-ERNLVCWSAVIAG 213
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD ++W+ MI Y+ + +A++ F EM+ + P+ +VL ACAH+G +D G
Sbjct: 604 PKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKG- 662
Query: 62 EIHLY---VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+H + + G D + S +VD+ + G ++ +L + + E + W +++
Sbjct: 663 -LHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNC 721
Query: 118 AVHGFAHEALAMFDRMI 134
+ G A F+ ++
Sbjct: 722 KMQGNVEVAEKAFNSLL 738
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 220/333 (66%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP ++++SW+ MI CY++N + EAL+ F E+ + + P+ VTM +VL ACA L AL+
Sbjct: 236 MPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALE 295
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
GR IH Y+++ G D + + SALV MYA+CG L+ VF ++ ++++ WNS+I
Sbjct: 296 QGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYG 355
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHGF +A+ +F+ M Y VEP+ ++F+SVL AC+HAGLV+EG+ F SM + I P V
Sbjct: 356 VHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSV 415
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A LE+A ++I + + +P +WG+LLG C++H N+E+A A L
Sbjct: 416 EHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFD 475
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W V +++ ++ G++K PG SWIE++RK+Y F + D
Sbjct: 476 LEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQK-VPGRSWIEVKRKIYSFVSVD 534
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P +++++ L KL +LK YVP+ + +L
Sbjct: 535 EVNPRMEQLHALLVKLSMELKEEGYVPQTKVVL 567
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 6/185 (3%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
+P Q T ++ +C H +L + +H ++++ GFD D ++ + L++MY+ S+D +
Sbjct: 67 NPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARK 126
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-- 155
VF K R + ++ +N++ L++ G E L M+ RM + + T+ VL AC +
Sbjct: 127 VFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASEC 186
Query: 156 --GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
L+ +G R + + V +VD+ +K G + +A + + N V W
Sbjct: 187 FVSLLNKG-REIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVK-NVVSW 244
Query: 214 GALLG 218
A++
Sbjct: 245 SAMIA 249
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 214/326 (65%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI++W MIT Y+QN EA+ F+ M+ +G+ PD++T+A VLSAC+ +GAL+LG E+
Sbjct: 318 KDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL 377
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y + G +VY+G+ALVDMYAKCG LD+++ VF K+ KN+ WN++I GLA +G
Sbjct: 378 DGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRG 437
Query: 124 HEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+ F M E ++P+ +TFI VLSAC HAGLV++G+R F S+T + I P++EHY
Sbjct: 438 DEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYS 497
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL+++G LE+A + I + +AV+ GALL C+ +N+EI +N ++ LEP
Sbjct: 498 CMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPT 557
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + K+R M+E G+ K PG SW+E+ KV +F A D+
Sbjct: 558 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNK-TPGCSWVEVSGKVLEFYAGDEPQH 616
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
+D++Y L L ++++L YVP L+
Sbjct: 617 GADDMYQVLDLLVDEMRLEGYVPNLD 642
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 11/224 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P RD++SW M+ Y + E F +M G ++P+ VT+A VL+AC G L L
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVL 272
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + + ++D +GSAL+ MY KCG + + VF + +K++ WN++I G A
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----IT 175
+G ++EA+++F M + P+ +T VLSAC+ G +E G S GY+ +
Sbjct: 333 NGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELG-----SELDGYASRRGLY 387
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V +VD+ +K G L+ A+E+ R + N W AL+ G
Sbjct: 388 SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCK-NVASWNALICG 430
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP +++ SW +I + N + EA+ F M+N G+ PD +T VLSAC H G +
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKD 475
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
G+ + QI I+ Y S +VD+ A+ G L+ + K+ +K
Sbjct: 476 GKRWFNSLTPEFQIIPKIEHY--SCMVDLLARSGHLEEAWDFIEKIPDK 522
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
+L F M S I PD T+ +L A A A L R H + +IG + + +L+
Sbjct: 136 SLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLIT 195
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGV 143
MY+ + VF + +++ WN++++ G E MF M+ E V PN V
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAV 255
Query: 144 TFISVLSACTHAGLVEEGR 162
T VL+AC G + GR
Sbjct: 256 TVAVVLAACRDQGDLVLGR 274
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/333 (42%), Positives = 209/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARD--IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP RD +SW MI Y Q+ + EA F+ M+ + D+ A++LSAC LGAL+
Sbjct: 155 MPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALE 214
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ IH Y+ + G ++D + + ++DMY KCG L+++ VF +L +K + WN +I GLA
Sbjct: 215 QGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLA 274
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ +F M E V P+G+TF++VLSAC H+GLVEEG+ F MT + P +
Sbjct: 275 MHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGM 334
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EH+GCMVDLL +AGLLE+A +LI P+A + GAL+G C++H N E+ +++
Sbjct: 335 EHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE 394
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP+NSG LL N+YA RW +V K+R M + G+ K+ PG S IE E V +F A
Sbjct: 395 LEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV-KKAPGFSMIESESGVDEFIAGG 453
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
++HP + EIY+ L ++ E ++ YVP+ + +L
Sbjct: 454 RAHPQAKEIYAKLDEILETIRSIGYVPDTDGVL 486
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 12/213 (5%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
R + ++ M + +SP++ T ++ AC A++ G++IH +V++ GF D + + L
Sbjct: 76 RNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNL 135
Query: 83 VDMYAKCGSLDRSLLVFFKL--REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP 140
+ MY SL+++ VF + R++N WN++I HEA A+FDRM ENV
Sbjct: 136 IHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL 195
Query: 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLED 196
+ S+LSACT G +E+G+ GY I + + ++D+ K G LE
Sbjct: 196 DKFVAASMLSACTGLGALEQGK-----WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 250
Query: 197 ALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
A E+ Q W ++GG +H E A
Sbjct: 251 ASEVFNELP-QKGISSWNCMIGGLAMHGKGEAA 282
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 214/326 (65%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI++W MIT Y+QN EA+ F+ M+ +G+ PD++T+A VLSAC+ +GAL+LG E+
Sbjct: 318 KDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL 377
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y + G +VY+G+ALVDMYAKCG LD+++ VF K+ KN+ WN++I GLA +G
Sbjct: 378 DGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRG 437
Query: 124 HEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+ F M E ++P+ +TFI VLSAC HAGLV++G+R F S+T + I P++EHY
Sbjct: 438 DEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYS 497
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL+++G LE+A + I + +AV+ GALL C+ +N+EI +N ++ LEP
Sbjct: 498 CMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPT 557
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + K+R M+E G+ K PG SW+E+ KV +F A D+
Sbjct: 558 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNK-TPGCSWVEVSGKVLEFYAGDEPQH 616
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
+D++Y L L ++++L YVP L+
Sbjct: 617 GADDMYQVLDLLVDEMRLEGYVPNLD 642
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 11/224 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P RD++SW M+ Y + E F +M G ++P+ VT+A VL+AC G L L
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVL 272
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + + ++D +GSAL+ MY KCG + + VF + +K++ WN++I G A
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----IT 175
+G ++EA+++F M + P+ +T VLSAC+ G +E G S GY+ +
Sbjct: 333 NGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELG-----SELDGYASRRGLY 387
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V +VD+ +K G L+ A+E+ R + N W AL+ G
Sbjct: 388 SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCK-NVASWNALICG 430
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP +++ SW +I + N + EA+ F M+N G+ PD +T VLSAC H G +
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKD 475
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
G+ + QI I+ Y S +VD+ A+ G L+ + K+ +K
Sbjct: 476 GKRWFNSLTPEFQIIPKIEHY--SCMVDLLARSGHLEEAWDFIEKIPDK 522
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
+L F M S I PD T+ +L A A A L R H + +IG + + +L+
Sbjct: 136 SLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLIT 195
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGV 143
MY+ + VF + +++ WN++++ G E MF M+ E V PN V
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVV 255
Query: 144 TFISVLSACTHAGLVEEGR 162
T VL+AC G + GR
Sbjct: 256 TVAVVLAACRDQGDLVLGR 274
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 214/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW T+I Y+ ++EAL F EM SG +P+ VTM ++L ACAHLGA+D+G
Sbjct: 284 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 343
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + G + ++L+DMYAKCG ++ + VF + K+L WN++I G A
Sbjct: 344 RWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 403
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A + +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SMT Y +TP++
Sbjct: 404 MHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKL 463
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +GL ++A E+I + + +P+ VIW +LL CK+H N+E+ L+
Sbjct: 464 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIK 523
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA RW EV R + + G+ K+ PG S IE++ V++F D
Sbjct: 524 IEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGD 582
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP + EIY L +++ L+ A +VP+ +L
Sbjct: 583 KFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 615
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ ++EAL+ F +M + + PD+ TM TV+SACA G+++LG
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y+KCG L+ + +F L K++ WN++I G
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR +R + S
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ +S + W A++ G +H
Sbjct: 363 LRTS------LIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMH 405
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 34/253 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T +L +CA A G++IH
Sbjct: 55 NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIH 114
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
+V+++G D+D+Y+ ++L+ MY + G L+ + VF +
Sbjct: 115 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIE 174
Query: 102 --------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ K++ WN++I G A G EAL +F M+ NV P+ T ++V+SAC
Sbjct: 175 NAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 234
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E GR+ S + ++ ++DL SK G LE A L ++ + + W
Sbjct: 235 QSGSIELGRQVH-SWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK-DVISW 292
Query: 214 GALLGGCKLHRNL 226
L+GG H NL
Sbjct: 293 NTLIGGYT-HMNL 304
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 30/287 (10%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVD---MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
R IH +++ G Y S L++ + L ++ VF ++E NL WN++ G
Sbjct: 7 RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSI 174
A+ AL ++ MI + PN TF +L +C + +EG++ L + C +
Sbjct: 67 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 126
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
++ + + G LEDA ++ S + + V + AL+ G +E A +
Sbjct: 127 YVHTS----LISMYVQNGRLEDAHKVFDESPHR-DVVSYTALIKGYASRGYIENAQKMFD 181
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE----------KRCPGSSW 284
E+ + + + +++ YAE + E ++ M + + C S
Sbjct: 182 EIPVKDVVS---WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 238
Query: 285 IEMERKVYQ------FAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
IE+ R+V+ F ++ K A ++YS +L+ L +P
Sbjct: 239 IELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285
>gi|218192640|gb|EEC75067.1| hypothetical protein OsI_11193 [Oryza sativa Indica Group]
Length = 619
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 212/328 (64%), Gaps = 4/328 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW +MI ++N ++A++ F+++ NSG+ PD + ++VLSACA GA G
Sbjct: 249 MPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFSSVLSACAQAGARCYG 308
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + ++G +++ + S+LVDMYAKCG +D ++ +F ++ ++ WN++I GLA H
Sbjct: 309 MWVHQLMAELGLEMNHILSSSLVDMYAKCGRIDVAIGIFKTIKRNHVSVWNTMIGGLAAH 368
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ F M E + P+GVTF+++L+AC+H+G+VEE R+ F +MT YSITP +EH
Sbjct: 369 GLGSDAVMFFREMESEGLVPDGVTFVALLTACSHSGMVEEARQYFEAMTTKYSITPRIEH 428
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVD LS+AGLL++A +L+++ +P+AVIW ALL C +R ++ I V E+
Sbjct: 429 YGAMVDTLSRAGLLDEAYDLVKTMNVKPDAVIWRALLSACCRYRQTKLGEITVKEIAF-- 486
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
SG TLL N+Y+ +RW + ++ K+ GI K G SW+E+ R ++F A D+S
Sbjct: 487 -QGSGDYTLLSNIYSSANRWEDSEEVWKERKKKGIRK-SKGLSWVELGRSTHEFKAGDRS 544
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP +D IY L +L + K Y+P E
Sbjct: 545 HPDTDGIYKVLHRLSNKAKSEGYIPLTE 572
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 2 PARDIISWTTMITCYSQNKQFRE-ALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
P R I +T I S K E +L +N M + + PD T +L ACA +
Sbjct: 114 PVRAIFPYTNAILRASLEKGSPEKSLTDYNSMLRFTAFCPDYRTYVLLLKACAKCSNIYA 173
Query: 60 GREIHLYVMQIG---------------------------------FDIDVYIGSALVDMY 86
EIH ++++G + + + G+ ++ +
Sbjct: 174 IMEIHSQLVKLGLLSNQRIVTHLFKLYIDHGRVMEACKLFWLMLEWSAEPFYGNLMLMGF 233
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
KCG +D++ +F ++ K+L WNS+I G A + +A+ +F +++ + P+G +F
Sbjct: 234 LKCGQIDKAYQIFKRMPVKDLVSWNSMIAGTARNSCLKDAMNIFSKLVNSGLVPDGFSFS 293
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSS 204
SVLSAC AG G M + E+ H +VD+ +K G ++ A+ + ++
Sbjct: 294 SVLSACAQAGARCYGMWVHQLMA---ELGLEMNHILSSSLVDMYAKCGRIDVAIGIFKTI 350
Query: 205 KFQPNAVIWGALLGGCKLH 223
K + + +W ++GG H
Sbjct: 351 K-RNHVSVWNTMIGGLAAH 368
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 214/331 (64%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D++ W+++I ++QN EAL F MK +G Q T+ +VL AC L L+LG
Sbjct: 124 MVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELG 183
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H++V++ +D D+ + +AL+DMY KCGSL+ + VF ++ EK++ W+++I GLA +
Sbjct: 184 RQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQN 241
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EAL +F+ M ++PN VT + VL AC+HAGLVEEG F SM + I P EH
Sbjct: 242 GYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREH 301
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L +A++LI + +P+AV W ALL C++HRN+++A A +++ L+
Sbjct: 302 YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLD 361
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G LL N+YA RW +V ++R M GI+K PG SWIE+ ++++ F D+S
Sbjct: 362 PQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKE-PGCSWIEVSKQIHAFILGDRS 420
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI L++L +L YVP+ +L
Sbjct: 421 HPQIREINIQLNQLIYKLMGVGYVPDTNFVL 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 7/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI+ YS K +AL+ M G+ P+ T ++VL AC L L
Sbjct: 26 MPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNL--- 82
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +++IG D DV++ SAL+D+Y++ G L+ +L VF ++ +L W+SII G A +
Sbjct: 83 RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQN 142
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL +F RM T SVL ACT L+E GR+ + + ++
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVL---KYDQDLIL 199
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K G LEDA + + + + W ++ G
Sbjct: 200 NNALLDMYCKCGSLEDA-NAVFVRMVEKDVISWSTMIAG 237
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + L++MY K G L + VF K+ ++N+ W ++I + +AL M+ E
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196
V PN T+ SVL AC GL R+ + +V ++D+ S+ G LE+
Sbjct: 61 GVRPNMFTYSSVLRACD--GLFN--LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116
Query: 197 ALELIRSSKFQPNAVIWGALLGG 219
AL + + V+W +++ G
Sbjct: 117 ALRVF-DEMVTGDLVVWSSIIAG 138
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 215/334 (64%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW +M++ Y+QN Q EAL F+EM++S P VT ++SACA+LG LG
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL--REKNLFCWNSIIEGLA 118
R+ H +++ +ID + +AL+DMYAKCG L++++ +F + E+N WN +I G
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG EAL +F RM E VEPN TF S+LSAC+HAGL++EGR+ F M S+T E
Sbjct: 240 MHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK-RLSVTLED 298
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+H+ C+VD+L +AGLL++A +LI+ P+ +WGALL CK+H N+E+ A + L+
Sbjct: 299 KHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQ 358
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS-SWIEMERKVYQFAAS 297
LEPN++GY L+ N+YA ++W EV K+R MK G++K P + S IE + + F +
Sbjct: 359 LEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKK--PAAFSMIEYGKDILGFHTA 416
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+ +P E+Y + L ++K+A YVP+L L
Sbjct: 417 DQENPYRHEVYKKMESLAIEMKMAGYVPDLSCAL 450
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 3/225 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
M +D++ WT MIT Y Q ++ EAL F +M+ G+ D + + +V SA LG +
Sbjct: 18 MSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKN 77
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H Y + ++ +G++++ M+ KCG+ +++ LVF + E+++ WNS++ G
Sbjct: 78 AHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQ 137
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A EAL +FD M + +P VT + ++SAC + G G R+F + +
Sbjct: 138 NGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG-RKFHDFIVDSRMEIDTN 196
Query: 180 HYGCMVDLLSKAGLLEDALELIRS-SKFQPNAVIWGALLGGCKLH 223
++D+ +K G LE A++L + NA W L+ G +H
Sbjct: 197 LSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-ENVEPNGV 143
MYAKCG +F ++ K+L CW ++I EAL +F +M E + + +
Sbjct: 1 MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC----MVDLLSKAGLLEDALE 199
+SV SA G V+ GY+ + C ++ + +K G E A
Sbjct: 61 AVVSVASAVGQLGDVKNAH-----TVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKA-R 114
Query: 200 LIRSSKFQPNAVIWGALLGG 219
L+ + + + W ++L G
Sbjct: 115 LVFDMMMERDVISWNSMLSG 134
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 211/328 (64%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI++W+TMI Y+ N +E ++ F +M + PDQ ++ LS+CA LGALDLG
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + F ++++ +AL+DMYAKCG++ R VF +++EK++ N+ I GLA +
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + A+F + + P+G TF+ +L C HAGL+++G R F +++C Y++ VEH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG+L+DA LI +PNA++WGALL GC+L ++ ++A + EL+ LE
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G L N+Y+ RW E ++R M + G+ K+ PG SWIE+E KV++F A DKS
Sbjct: 513 PWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGM-KKIPGYSWIELEGKVHEFLADDKS 571
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP SD+IY+ L L +++L +VP E
Sbjct: 572 HPLSDKIYAKLEDLGNEMRLMGFVPTTE 599
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 136/252 (53%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R +++WT + + Y+ + + REA+D F +M G+ PD + VLSAC H+G LD G
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ ++ + ++ + LV++YAKCG ++++ VF + EK++ W+++I+G A +
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
F E + +F +M+ EN++P+ + + LS+C G ++ G +S+ + +
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG-ISLIDRHEFLTNLFM 350
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL--HRNLEIAHIAVNELMI 238
++D+ +K G + E+ + K + + VI A + G H L A E +
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409
Query: 239 LEPNNSGYCTLL 250
+ P+ S + LL
Sbjct: 410 ISPDGSTFLGLL 421
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + ++I + N F E LD F ++ G+ T VL AC + LG ++H
Sbjct: 75 NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLH 134
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V++ GF+ DV ++L+ +Y+ G L+ + +F ++ ++++ W ++ G G
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHR 194
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-- 182
EA+ +F +M+ V+P+ + VLSAC H G ++ G Y E++
Sbjct: 195 EAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGE-----WIVKYMEEMEMQKNSFV 249
Query: 183 --CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V+L +K G +E A + S + + V W ++ G
Sbjct: 250 RTTLVNLYAKCGKMEKARSVF-DSMVEKDIVTWSTMIQG 287
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T+ +V HL ++IH+ ++ D ++ + L+ S L+F
Sbjct: 18 TLISVACTVNHL------KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHT 71
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG- 161
+ N+F +NS+I G + HE L +F + + +G TF VL ACT A + G
Sbjct: 72 QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L + CG++ +V ++ + S +G L DA +L + V W AL G
Sbjct: 132 DLHSLVVKCGFN--HDVAAMTSLLSIYSGSGRLNDAHKLFDEIP-DRSVVTWTALFSG 186
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 207/326 (63%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W MI+CYSQ +EAL ++ M+N + D T+ +LS+C+H+GAL++G
Sbjct: 171 MPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + G +V++G+AL+DMYAKCGSLD +L VF + ++ F WNS+I G VH
Sbjct: 231 VKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGFGVH 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA+ F++M+ V PN + F+ +L C+H GLVEEG F M+ +++ P ++H
Sbjct: 290 GFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKH 349
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+ +AG LE ALE+I S +Q + V+W LL K+H+N+ I IA+ L L
Sbjct: 350 YGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLG 409
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N+G C LL +YA + V ++R +K+ GI K PG SWIE+ +V++F DKS
Sbjct: 410 AVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGI-KTTPGWSWIEVSDQVHRFVVDDKS 468
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S+ IY L ++ + +A YV +
Sbjct: 469 HPDSEMIYQKLEEVTHKATMAGYVED 494
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLY 66
+W ++I ++Q+ +A+ +N M +S PD T + L AC + AL E+H
Sbjct: 76 AWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGS 135
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+++ G++ DV + + LV Y + G ++ + +VF + E++L WN++I + G+ EA
Sbjct: 136 IIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEA 195
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L ++D M ENV +G T + +LS+C+H G + G + + + V ++D
Sbjct: 196 LRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMG-VKLHRIASEKGLLRNVFVGNALID 254
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNS 244
+ +K G L+ ALE+ +A W +++ G +H + A N+++ + PN+
Sbjct: 255 MYAKCGSLDGALEVFNG--MPRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSI 312
Query: 245 GYCTLL 250
+ LL
Sbjct: 313 AFLGLL 318
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLR 103
TVL C +L L ++I +V+ G I +++++ A GSL + +F +
Sbjct: 14 TVLQGCNNLTRL---KKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHIL 70
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGVTFISVLSAC---------- 152
WNSII G A +A+ ++RM++++V P+ TF L AC
Sbjct: 71 NPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCE 130
Query: 153 -THAGLVEEGRRRFLSMTCG-----------------YSITPEVE--HYGCMVDLLSKAG 192
H ++ G R + + G + PE + + M+ S+AG
Sbjct: 131 EVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAG 190
Query: 193 LLEDALEL---IRSSKFQPNAVIWGALLGGCK----LHRNLEIAHIAVNELMILEPNNSG 245
++AL + +R+ + LL C L+ +++ IA + ++ N
Sbjct: 191 YHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLL---RNVF 247
Query: 246 YCTLLLNMYAE 256
L++MYA+
Sbjct: 248 VGNALIDMYAK 258
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 214/331 (64%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D I W ++I ++QN + AL+ F MK +G +Q T+ +VL AC L L+LG
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H+++++ +D D+ + +ALVDMY KCGSL+ +L VF +++E+++ W+++I GLA +
Sbjct: 280 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EAL +F+RM +PN +T + VL AC+HAGL+E+G F SM Y I P EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL KAG L+DA++L+ + +P+AV W LLG C++ RN+ +A A +++ L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G TLL N+YA +W V +IR M++ GI+K PG SWIE+ ++++ F D S
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKE-PGCSWIEVNKQIHAFIIGDNS 516
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP E+ L++L +L YVPE +L
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVL 547
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWTTMI+ YS+ K ++AL+ M + P+ T ++VL +C + +
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV--- 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +++ G + DV++ SAL+D++AK G + +L VF ++ + WNSII G A +
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F RM T SVL ACT L+E G + + + ++
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV---KYDQDLIL 295
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G LEDAL + K + + + W ++ G
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 15 CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI--HLYVMQIGF 72
CY ++ A+ A + +++ G+ D T + ++ C A+ G I HLY G
Sbjct: 37 CYQRD--LPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFN--GH 92
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+++ + L++MY K L+ + +F ++ ++N+ W ++I + +AL +
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 133 MIYENVEPNGVTFISVLSACT--------HAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
M+ +NV PN T+ SVL +C H G+++EG + +V +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------------LESDVFVRSAL 200
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+D+ +K G EDAL + +A++W +++GG
Sbjct: 201 IDVFAKLGEPEDALSVF-DEMVTGDAIVWNSIIGG 234
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 213/326 (65%), Gaps = 3/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MPAR++ SWT MI+ Y+QN Q+ +AL F M+ + + P++VT+A+VL ACA+LGAL++
Sbjct: 174 MPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEV 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
G I +Y G+ ++Y+ +AL++MYA+CG +D++ VF ++ +NL WNS+I GLA
Sbjct: 234 GERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLA 293
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EA+ +F +M+ E P+ VTF+ VL ACTH G+V EG+ F SM +SI P++
Sbjct: 294 VHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKL 353
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AG L +A +LI +P++V+WG LLG C H ++E+A A L
Sbjct: 354 EHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFE 413
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP+N G +L N+YA RW V ++R MK I K G S+IE +++F D
Sbjct: 414 LEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITK-AAGYSFIEEGGHIHKFIVED 472
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYV 324
+SH SDEIY+ L ++ ++KL V
Sbjct: 473 RSHSRSDEIYALLDEVSMKMKLHGNV 498
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 35/256 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + +I YS + + + +M G SP++ + + SACA L + G
Sbjct: 42 IPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQG 101
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAK-------------------------------C 89
R +H + ++ GF DV+ +ALVDMYAK C
Sbjct: 102 RMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARC 161
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISV 148
G L+ +L +F + +N+ W ++I G A +G +AL+MF M E + PN VT SV
Sbjct: 162 GDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221
Query: 149 LSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L AC + G +E G R + GY V + ++++ ++ G ++ A + +
Sbjct: 222 LPACANLGALEVGERIEVYARGNGYFKNLYVSN--ALLEMYARCGRIDKAWGVFEEIDGR 279
Query: 208 PNAVIWGALLGGCKLH 223
N W +++ G +H
Sbjct: 280 RNLCSWNSMIMGLAVH 295
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F + + +F +N +I+ + HG H+ +++ +M + PN +F + SAC
Sbjct: 38 LFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSS 97
Query: 158 VEEGR---RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
++GR F+ G + +VD+ +K GLL A + + + W
Sbjct: 98 HQQGRMLHTHFVKSGFGCDVFALT----ALVDMYAKLGLLSLARKQFDEMTVR-DVPTWN 152
Query: 215 ALLGGCKLHRNLEIAHIAVNELMILEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
+++ G +LE A EL L P N T +++ YA+ ++A+ + + M+E
Sbjct: 153 SMIAGYARCGDLEGAL----ELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEE 207
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 210/329 (63%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A ++ W MI + ++ + EAL FNEM+ SG+ D+VTMA++L AC HLGAL+LG+
Sbjct: 170 ASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKW 229
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H+Y+ + ++DV +G+ALVDMYAKCGS++ ++ VF ++ EK++ W ++I GLA+ G
Sbjct: 230 LHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 289
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+AL +F M V+P+ +TF+ VL+AC+HAGLV EG F SM Y I P +EHYG
Sbjct: 290 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 349
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L +AG + +A +LI++ P+ + LL C++H NL +A A +L+ L+P
Sbjct: 350 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 409
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N G LL N+Y+ + W K+R M E I K+ PG S IE+ V++F D SHP
Sbjct: 410 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI-KKPPGCSAIEVGGVVHEFVKGDVSHP 468
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
S EIY +L + +LK A YVP+ +L
Sbjct: 469 QSSEIYETLDDMMRRLKSAGYVPDKSEVL 497
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 37/251 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + ++I Y+ R+A+ + M G+ PD+ T ++ +C G L G
Sbjct: 38 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEG 94
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------------- 105
+++H + ++GF D YI + L++MY+ CG L + VF K+ K
Sbjct: 95 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 154
Query: 106 -----------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
NLFCWN +I G EAL++F+ M V+ + VT S+
Sbjct: 155 DLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 214
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
L ACTH G +E G+ + + I +V +VD+ +K G +E A+ + + +
Sbjct: 215 LIACTHLGALELGKWLHVYIE-KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EK 272
Query: 209 NAVIWGALLGG 219
+ + W AL+ G
Sbjct: 273 DVMTWTALIVG 283
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++WT +I + Q +AL+ F+EM+ S + PD +T VL+AC+H G ++ G
Sbjct: 269 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 328
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 96/207 (46%), Gaps = 13/207 (6%)
Query: 74 IDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
+D + S +V A GSL + LVF ++ F NSII G +A+ +
Sbjct: 8 VDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQ 67
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSK 190
M+ + ++P+ TF S+ +C G++ EG++ S G++ +++ ++++ S
Sbjct: 68 LMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQN--TLMNMYSN 122
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TL 249
G L A ++ + V W ++G + ++ H A+ +E ++ +C +
Sbjct: 123 CGCLVSARKVF-DKMVNKSVVSWATMIGA---YAQWDLPHEAIKLFRRMEIASNLFCWNI 178
Query: 250 LLNMYAEVSRWAEVTKIRVAMKELGIE 276
++N + E S + E + M+ G++
Sbjct: 179 MINGHVEDSDYEEALSLFNEMQLSGVK 205
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISWT +I ++ +AL+ F++M+ SG++ D V++ VL+ACA LGAL LG
Sbjct: 187 MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +VM F ++ I ++L+DMY++CG ++ + VF K+ ++ L WNSII G AV+
Sbjct: 247 LWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVN 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA E+L F M E +P+GV++ L+AC+HAGLV +G F +M + ITP +EH
Sbjct: 307 GFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL +AG LEDAL +I +PN V+ G+LL C+ H ++ +A + L L+
Sbjct: 367 YGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLD 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P Y LL N+YA + +W +R MK G++K+ PG S +E++ KV++F A D
Sbjct: 427 PEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKK-PGYSSVEIDGKVHEFVAGDNY 485
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +D IYS L L +LK+ YVP + +L
Sbjct: 486 HADADNIYSMLDLLCHELKVCGYVPGSDTIL 516
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 43/254 (16%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA--LDLGREI 63
I+ WT+ + Y +N Q EA F M+ +G+ P+ +T T+LSACA + +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 64 HLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS---------- 112
H Y + G D V +G+AL+DMY+KC L + VF+ L KN WN+
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 113 ---------------------IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+I GL HG++ +AL F +M V + V+ I+VL+A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 152 CTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA----LELIRSSK 205
C G + G RF+ ++ ++D+ S+ G +E A +++ + +
Sbjct: 237 CADLGALTLGLWVHRFVMPQ---EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTL 293
Query: 206 FQPNAVIWGALLGG 219
N++I G + G
Sbjct: 294 VSWNSIIVGFAVNG 307
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 198/319 (62%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI+SWTT++T YSQ+ EAL F M+ G +P+Q T ++VL +CA L L+ G
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + + G D + I SAL+DMYAKCGS+ + VF K+ ++ W +II G A H
Sbjct: 493 RQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQH 552
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM ++ N VT + VL AC+H G+VEEG F M GY + PE+EH
Sbjct: 553 GLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEH 612
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL + G L+DA+E IR +PN ++W LLGGC++H N+E+ IA +++ +
Sbjct: 613 YACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIR 672
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P S LL N Y E + + +R MK+ G++K PG SWI ++ +V++F + D+
Sbjct: 673 PEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKE-PGYSWISVKGRVHKFYSGDQQ 731
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP EIY L +L E++K
Sbjct: 732 HPQKKEIYVKLEELREKIK 750
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 7/226 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT MI +++ F + F EM NSGI PD+ + ++ +C L +L+LG
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 186
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ GF +++ ++L++MYAK GS++ S VF + E N WN++I G +
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 246
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F RM PN T +SV A V G + + I V
Sbjct: 247 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG-KEVQNCASELGIEGNVLV 305
Query: 181 YGCMVDLLSKAGLLEDA-----LELIRSSKFQP-NAVIWGALLGGC 220
++D+ SK G L DA I P NA+I G GC
Sbjct: 306 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 351
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 13/242 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI+ YSQ+ +EAL+ + +M +GI+ D T +V +A A +L GR +H V+
Sbjct: 339 WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVL 398
Query: 69 QIGFDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G D+ V + +A+ D Y+KCG L+ VF ++ E+++ W +++ + EAL
Sbjct: 399 KCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEAL 458
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
A F M E PN TF SVL +C +E GR+ + C + E ++D+
Sbjct: 459 ATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVH-GLLCKAGLDTEKCIESALIDM 517
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG----------CKLHRNLEIAHIAVNELM 237
+K G + +A ++ P+ V W A++ G +L R +E++ I N +
Sbjct: 518 YAKCGSITEAGKVFDKIS-NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVT 576
Query: 238 IL 239
+L
Sbjct: 577 LL 578
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 26/258 (10%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGF---DIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
VL CA G++ + +H V++ F D+ V A +Y+KC + VF ++
Sbjct: 70 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA-AHVYSKCSEFRAACGVFDEMP 128
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
++N+F W +I G HG + F M+ + P+ + +++ +C +E G+
Sbjct: 129 QRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKM 188
Query: 164 RFLSMTC-GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
+ G++ V ++++ +K G +ED+ + + + N V W A++ GC
Sbjct: 189 VHAQIVMRGFATHIFVST--SLLNMYAKLGSIEDSY-WVFNMMTEHNQVSWNAMISGCTS 245
Query: 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK---------IRVAMKEL 273
+ H+ +L + N G CT NMY VS V K ++ EL
Sbjct: 246 NG----LHLEAFDLFVRMKN--GACT--PNMYTLVSVSKAVGKLVDVNMGKEVQNCASEL 297
Query: 274 GIEKRC-PGSSWIEMERK 290
GIE G++ I+M K
Sbjct: 298 GIEGNVLVGTALIDMYSK 315
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 214/331 (64%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D I W ++I ++QN + AL+ F MK +G +Q T+ +VL AC L L+LG
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H+++++ +D D+ + +ALVDMY KCGSL+ +L VF +++E+++ W+++I GLA +
Sbjct: 280 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EAL +F+RM +PN +T + VL AC+HAGL+E+G F SM Y I P EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL KAG L+DA++L+ + +P+AV W LLG C++ RN+ +A A +++ L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G TLL N+YA +W V +IR M++ GI+K PG SWIE+ ++++ F D S
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKE-PGCSWIEVNKQIHAFIIGDNS 516
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP E+ L++L +L YVPE +L
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVL 547
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWTTMI+ YS+ K ++AL+ M + P+ T ++VL +C + +
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV--- 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +++ G + DV++ SAL+D++AK G + +L VF ++ + WNSII G A +
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F RM T SVL ACT L+E G + + + ++
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV---KYDQDLIL 295
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G LEDAL + K + + + W ++ G
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 15 CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI--HLYVMQIGF 72
CY ++ A+ A + +++ G+ D T + ++ C A+ G I HLY G
Sbjct: 37 CYQRD--LPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFN--GH 92
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+++ + L++MY K L+ + +F ++ ++N+ W ++I + +AL +
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 133 MIYENVEPNGVTFISVLSACT--------HAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
M+ +NV PN T+ SVL +C H G+++EG + +V +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------------LESDVFVRSAL 200
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+D+ +K G EDAL + +A++W +++GG
Sbjct: 201 IDVFAKLGEPEDALSVF-DEMVTGDAIVWNSIIGG 234
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 214/326 (65%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI++W MIT Y+QN EA+ F+ M+ +G+ PD++T+A VLSAC+ +GAL+LG E+
Sbjct: 318 KDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL 377
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y + G +VY+G+ALVDMYAKCG LD+++ VF K+ KN+ WN++I GLA +G
Sbjct: 378 DGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRG 437
Query: 124 HEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA+ F M E ++P+ +TFI VLSAC HAGLV++G+R F S+T + I P++EHY
Sbjct: 438 DEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYS 497
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL+++G LE+A + I + +AV+ GALL C+ +N+EI +N ++ LEP
Sbjct: 498 CMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEPT 557
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA R + K+R M+E G+ K PG SW+E+ KV +F A D+
Sbjct: 558 NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNK-TPGCSWVEVSGKVLEFYAGDEPQH 616
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
+D++Y L L ++++L YVP L+
Sbjct: 617 GADDMYQVLDLLVDEMRLEGYVPNLD 642
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 11/224 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P RD++SW M+ Y + E F +M G ++P+ VT+A VL+AC G L L
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVL 272
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + + ++D +GSAL+ MY KCG + + VF + +K++ WN++I G A
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----IT 175
+G ++EA+++F M + P+ +T VLSAC+ G +E G S GY+ +
Sbjct: 333 NGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELG-----SELDGYASRRGLY 387
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V +VD+ +K G L+ A+E+ R + N W AL+ G
Sbjct: 388 SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCK-NVASWNALICG 430
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP +++ SW +I + N + EA+ F M+N G+ PD +T VLSAC H G +
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKD 475
Query: 60 GREIHLYV---MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
G+ + QI I+ Y S +VD+ A+ G L+ + K+ +K
Sbjct: 476 GKRWFNSLTPEFQIIPKIEHY--SCMVDLLARSGHLEEAWDFIEKIPDK 522
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
+L F M S I PD T+ +L A A A L R H + +IG + + +L+
Sbjct: 136 SLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAAHALLGKIGLNGHDHTVHSLIT 195
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGV 143
MY+ + VF + +++ WN++++ G E MF M+ E V PN V
Sbjct: 196 MYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVV 255
Query: 144 TFISVLSACTHAGLVEEGR 162
T VL+AC G + GR
Sbjct: 256 TVAVVLAACRDQGDLVLGR 274
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M D+ SW ++I Y+QN EA F++M G + + VT++ VL ACAH GAL +
Sbjct: 259 MEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQI 318
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH V+++ + ++ +G+++VDMY KCG ++ + F +L+ KN+ W ++ G +
Sbjct: 319 GKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGM 378
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F MI ++PN +TF+SVL+AC+HAGL++EG F M C + + P +E
Sbjct: 379 HGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIE 438
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL +AG L++A LI+ K +P+ ++WG+LLG C++H+N+E+ I+ +L L
Sbjct: 439 HYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKL 498
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+N GY LL N+YA+ RW +V ++R+ MK G+ K PG S +E + +V+ F DK
Sbjct: 499 DPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKT-PGYSIVEHKGRVHVFLVGDK 557
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY L +L+ +L+ Y+P + ++L
Sbjct: 558 EHPQHEKIYEYLDELNVKLQEVGYMPNVTSVL 589
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 22/267 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAF-----------NEMKNSGISPDQVTMATVLS 49
+P R+++SWT+MI+ Y QN++ REA+ F +E+ G+ D V + V+S
Sbjct: 147 IPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVIS 206
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
ACA + + +H ++ GF+ + +G+ L+D YAKCG + S VF + E ++
Sbjct: 207 ACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCS 266
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR---RRF 165
WNS+I A +G + EA ++F M+ V N VT +VL AC H+G ++ G+ +
Sbjct: 267 WNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQV 326
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
+ M ++ +VD+ K G +E A + K + N W ++ G +H +
Sbjct: 327 VKMELEDNLVVGTS----IVDMYCKCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHGH 381
Query: 226 LEIAHIAVNELMI--LEPNNSGYCTLL 250
+ A E++ ++PN + ++L
Sbjct: 382 GKEAMKVFYEMIRCGIKPNYITFVSVL 408
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 151/328 (46%), Gaps = 52/328 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+ SW ++I ++++ +AL AF+ M+ + P++ T + +C+ L L G++IH
Sbjct: 51 VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQ 110
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
G+ D+++ SAL+DMY+KCG L+ + +F ++ E+N+ W S+I G + A E
Sbjct: 111 QAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERARE 170
Query: 126 ALAMF------DRMIYENVEPNGVTFISVL----------------SACTHAGLVEEGRR 163
A+ +F D Y+ + GV SVL + C H V++G
Sbjct: 171 AVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFE 230
Query: 164 RFLSM---------TCG-YSIT---------PEVEHYGCMVDLLSKAGLLEDAL----EL 200
L++ CG S++ +V + ++ + ++ GL +A ++
Sbjct: 231 GCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDM 290
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-PNNSGYCTLLLNMYAEVSR 259
++ + + NAV A+L C L+I ++++ +E +N T +++MY + R
Sbjct: 291 VKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGR 350
Query: 260 WAEVTKIRVAMKELGIEKRCPGSSWIEM 287
+ +A K KR SW M
Sbjct: 351 ------VEMARKAFDRLKRKNVKSWTVM 372
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ +++ WNSII A G + +AL F M ++ PN TF + +C+ + G++
Sbjct: 48 KTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQ 107
Query: 164 -RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ GY ++ ++D+ SK G L DA +L + N V W +++ G
Sbjct: 108 IHQQAFVFGYG--SDIFVASALIDMYSKCGYLNDARKLFDEIP-ERNVVSWTSMISG 161
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 212/342 (61%), Gaps = 13/342 (3%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SW +MIT + Q EAL+ F EM+ + P+ +TM VLSACA + GR
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII------- 114
+H Y+ + + + +A++DMY KCGS++ + +F K+ EK++ W +++
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317
Query: 115 -----EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
+GLA+HG +A+A+F +M + V+PN VTF ++L AC+H GLVEEGR F M
Sbjct: 318 EYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME 377
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
Y + P V+HY CMVD+L +AGLLE+A+ELI P A +WGALLG C +H N+ +A
Sbjct: 378 LVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLA 437
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289
A ++L+ LEP N G LL N+YA+ +W V+ +R M+++G++K PG S IE++
Sbjct: 438 EQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKE-PGCSSIEVDG 496
Query: 290 KVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
V++F D SHP++ +IY+ L ++ +L+ YVP +L
Sbjct: 497 IVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLL 538
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ +W T+I Y+ + ++L F M S PD+ T ++ A + L L
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT 154
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ H V+++ DV+I ++L+ YAKCG L VF +++ WNS+I
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQ 214
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL +F M +NV+PNG+T + VLSAC E G R S I +
Sbjct: 215 GGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIXESLT 273
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M+D+ +K G +EDA L + + V W +L G
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVG 312
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQF------------REALDAFNEMKNSGISPDQVTMATVL 48
MP +DI+SWTTM+ Y++ ++ ++A+ F++M+ + P+ VT +L
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 357
Query: 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRSLLVFFKLR- 103
AC+H+G ++ GR + Q+ V G + +VD+ + G L+ ++ + K+
Sbjct: 358 CACSHVGLVEEGRT---FFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPM 414
Query: 104 EKNLFCWNSIIEGLAVH 120
W +++ +H
Sbjct: 415 APAASVWGALLGACTIH 431
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH +++ G D + S L+ A SLD + VF ++ NL+ WN++I A
Sbjct: 52 KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111
Query: 119 VHGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTH----------AGLVEE---GRRR 164
H++L +F RM++++ + P+ TF ++ A + G+V + G
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171
Query: 165 FL------------SMTCGYSI-----TPEVEHYGCMVDLLSKAGLLEDALELIR---SS 204
F+ + GY + +V + M+ + G E+ALEL + +
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231
Query: 205 KFQPNAVIWGALLGGCKLHRNLEIA 229
+PN + +L C + E
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFG 256
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 214/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D+ISW T+I ++ ++EAL F EM SG SP+ VTM +VL ACAHLGA+D+G
Sbjct: 258 LAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG 317
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + G + ++L+DMYAKCG ++ + VF + ++L WN++I G A
Sbjct: 318 RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFA 377
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ A +F +M ++P+ +TF+ +LSAC+H+G+++ GR F SM+ Y ITP++
Sbjct: 378 MHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKL 437
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL GL ++A E+IR+ +P+ VIW +LL CK+H N+E+ L+
Sbjct: 438 EHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIK 497
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA RW +V KIR + + GI K+ PG S IE++ V++F D
Sbjct: 498 IEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGI-KKAPGCSSIEIDSVVHEFIIGD 556
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP + EIY L +++ ++ +VP+ +L
Sbjct: 557 KFHPRNREIYRMLEEMEMLMEETGFVPDTSEVL 589
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 128/230 (55%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SW MI+ Y + F+EAL+ + +M + + PD+ TM TV+SACA G+++LG
Sbjct: 157 ISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELG 216
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I + L+D+Y+KCG ++ + +F L +K++ WN++I G
Sbjct: 217 RQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHM 276
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +SVL AC H G ++ GR +R +T S
Sbjct: 277 NLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASS 336
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ S + W A++ G +H
Sbjct: 337 LLTS------LIDMYAKCGDIEAAKQVF-DSMLTRSLSSWNAMIFGFAMH 379
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 140/297 (47%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ N AL + M + G+ P+ + +L +CA AL G++IH
Sbjct: 29 NLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIH 88
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V+++G+D+D+Y+ ++L+ MYA+ G L+ + VF + +++ + ++I G A G+ +
Sbjct: 89 GHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYIN 148
Query: 125 EALAMFDR-------------------------------MIYENVEPNGVTFISVLSACT 153
A +FD M+ NV+P+ T ++V+SAC
Sbjct: 149 NARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACA 208
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E G R+ S + ++ ++DL SK G +E A L + + + + W
Sbjct: 209 QSGSIELG-RQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA-KKDVISW 266
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ + T+L + A ++ RW V
Sbjct: 267 NTLIGG-HTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHV 322
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 97/212 (45%), Gaps = 13/212 (6%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L ++ +F ++E NL WN++ G A++ + AL ++ MI + PN +F +L +
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 152 CTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C + + EG++ + GY + V ++ + ++ G LEDA ++ S + +
Sbjct: 75 CAKSKALIEGQQIHGHVLKLGYDLDMYVN--TSLISMYAQNGRLEDAHKVFDRSSHR-HV 131
Query: 211 VIWGALLGGCKLHRNLEIAH-----IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
V + AL+ G + A I+V +++ SGY N + + ++ K
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVE-TCNFKEALELYKDMMK 190
Query: 266 IRVAMKE---LGIEKRCPGSSWIEMERKVYQF 294
V E + + C S IE+ R+++ +
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSW 222
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 206/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +I+W MI Y+QN L+ + EM++ G PD +T+ VLS+CAHLGAL +G
Sbjct: 174 MPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVG 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+ + GF + ++ +ALV+MYA+CG+L ++ +F + K++ W +II G +H
Sbjct: 234 KEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMH 293
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +FD MI ++P+G F+SVLSAC+HAGL +G F M Y + P EH
Sbjct: 294 GQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEH 353
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A ELI S + + + +WGALLG CK+HRN+E+A +A +++ LE
Sbjct: 354 YSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELE 413
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+GY LL N+Y E + ++R+ M++ ++K PG S++E + +V+ F A D++
Sbjct: 414 PTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKD-PGCSYVEFKGRVHLFFAGDRN 472
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP ++EIY L++L+ +K
Sbjct: 473 HPQTNEIYKKLNELENLVK 491
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 133/247 (53%), Gaps = 6/247 (2%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + ++++ Y+ N + ++ + F EM+ G+ + VTM ++ C G L LG +H +
Sbjct: 79 VCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGF 138
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D+D +G+ L+ MY K G +D +F ++ K L WN++I G A +G A+
Sbjct: 139 CVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNV 198
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITPEVEHYGCMV 185
L ++ M + P+ +T + VLS+C H G + G+ M G+S P + + +V
Sbjct: 199 LELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNN--ALV 256
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNN 243
++ ++ G L+ A ++ + + V W A++GG +H E+A +E++ ++P+
Sbjct: 257 NMYARCGNLKKARDIFDGMPVK-SVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDG 315
Query: 244 SGYCTLL 250
+ + ++L
Sbjct: 316 TAFVSVL 322
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 119/284 (41%), Gaps = 54/284 (19%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M SG SP+ T + +CA L G+++H +V + G ++ ++ ++L+ MY KC
Sbjct: 1 MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60
Query: 92 LDRSLLVFFK--LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV- 148
+D + +F + K C+NS++ G A++ + + +F M VE NGVT + +
Sbjct: 61 IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120
Query: 149 ----------LSACTHAGLVEEG-------RRRFLSM-------TCGYSITPEVEHYG-- 182
L C H V+ G L+M CG + E+ G
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180
Query: 183 ---CMVDLLSKAGLLEDALELIR---SSKFQPNAVI----------WGALLGGCKLHRNL 226
M++ ++ GL + LEL + S F P+ + GAL G ++ R +
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240
Query: 227 EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270
E + N + NN+ L+NMYA + I M
Sbjct: 241 EGFGFSSNPFL----NNA-----LVNMYARCGNLKKARDIFDGM 275
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 209/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++IS+ T+I Y++N EAL+ FNE+++ G+ T A++LS A +G + G +I
Sbjct: 440 KNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI 499
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ G ++ + +AL+ MY++CG+++ + VF + ++N+ W SII G A HGFA
Sbjct: 500 HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F +M+ E V PN VT+I+VLSAC+H GLV EG + F SM + + P +EHY C
Sbjct: 560 TQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L ++G L +A++ I S ++ +A++W LG C++H NLE+ A ++ EP++
Sbjct: 620 MVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD 679
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N+YA S+W EV+ IR AMKE + K G SW+E+E KV++F D SHP
Sbjct: 680 PAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKE-AGCSWVEVENKVHKFYVGDTSHPK 738
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ EIY L L ++K YVP L+ +L
Sbjct: 739 AAEIYDELQNLSVKIKKLGYVPNLDFVL 766
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ++WT MIT Q EA+D F EM SG PD+ T++ V+SACA++ L LG
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLG 290
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC---GSLDRSLLVFFKLREKNLFCWNSIIEG- 116
+++H ++ G +D +G L++MYAKC GS+ + +F ++ + N+F W ++I G
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSIT 175
+ G+ EAL +F MI +V PN TF S L AC + + G + F ++ G+S
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSV 410
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
V + ++ + +++G ++DA + F+ N + + ++ + N E A NE
Sbjct: 411 NCVAN--SLISMYARSGRIDDARKAF-DILFEKNLISYNTVIDAYAKNLNSEEALELFNE 467
Query: 236 L 236
+
Sbjct: 468 I 468
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 11/252 (4%)
Query: 5 DIISWTTMITCYSQNKQF-REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ SWT MIT Y Q + EALD F M + + P+ T ++ L ACA+L AL +G ++
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+ +++GF + ++L+ MYA+ G +D + F L EKNL +N++I+ A + +
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
EAL +F+ + + + + TF S+LS G + +G + + G + V
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSV--CN 516
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNELMI 238
++ + S+ G +E A ++ + N + W +++ G H + LE+ H + E
Sbjct: 517 ALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEG-- 573
Query: 239 LEPNNSGYCTLL 250
+ PN Y +L
Sbjct: 574 VRPNLVTYIAVL 585
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 5/221 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+RD+ISW+ M++C++ N AL F +M +G P++ A AC+ + +G
Sbjct: 130 SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDS 189
Query: 63 IHLYVMQIGF-DIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I +V++ G+ DV +G L+DM+ K G L + VF K+ E+N W +I L
Sbjct: 190 IFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EA+ +F MI EP+ T V+SAC + L+ G ++ S + +T +
Sbjct: 250 GYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLG-QQLHSQAIRHGLTLDRCV 308
Query: 181 YGCMVDLLSKAGLLED--ALELIRSSKFQPNAVIWGALLGG 219
C++++ +K + A I N W A++ G
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 7/204 (3%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY 77
N + +A+ M + G PD T + L C + D+G +H + Q +D
Sbjct: 43 NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++L+ +Y+KCG +++ +F + ++L W++++ A + AL F MI
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYGC-MVDLLSKA-GL 193
PN F + AC+ A V G F + GY + +V GC ++D+ K G
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDV-CVGCGLIDMFVKGRGD 220
Query: 194 LEDALELIRSSKFQPNAVIWGALL 217
L A ++ + NAV W ++
Sbjct: 221 LVSAFKVFEKMP-ERNAVTWTLMI 243
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISWT++IT ++++ +AL+ F++M G+ P+ VT VLSAC+H+G ++ G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
+ + G + + +VD+ + GSL ++ + K + W + +
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACR 657
Query: 119 VHG 121
VHG
Sbjct: 658 VHG 660
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 207/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M A+D ++W +MI+ ++QN + EALD F +M G+ + VT++++LSACA L A+ G
Sbjct: 511 MSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYG 570
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH +++ D++ SAL+DMY KCG+L+ +L VF + EKN WNSII H
Sbjct: 571 KEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAH 630
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E++ + M E + + VTF++++SAC HAG V+EG R F MT Y I P+VEH
Sbjct: 631 GLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEH 690
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVDL S+AG L+ A++ I F+P+A IWGALL C++HRN+E+A IA EL L+
Sbjct: 691 LSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 750
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N GY L+ N+ A RW V+K+R MK+ ++K PG SW+++ + F A+DK+
Sbjct: 751 PHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQK-IPGYSWVDVNNTSHLFVAADKN 809
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP S+EIY SL L +LK
Sbjct: 810 HPDSEEIYMSLKSLIIELK 828
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 2/219 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ +TMI+ Y N+ A+ F + GI P+ V +A+ L ACA + A+ +G+E+H
Sbjct: 414 DVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELH 473
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ ++ Y+ SAL+DMY+KCG LD S +F K+ K+ WNS+I A +G
Sbjct: 474 GYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPE 533
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F +MI E V+ N VT S+LSAC + G+ + G I ++ +
Sbjct: 534 EALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKG-PIRADLFAESAL 592
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+D+ K G LE AL + + N V W +++ H
Sbjct: 593 IDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAH 630
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 4/216 (1%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ W +I ++ R A+ + +M S PD T+ V+ +CA LGAL LGR +H
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVH 170
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+G D D+Y+GSAL+ MYA G LD + VF + E++ WN +++G G
Sbjct: 171 RTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVA 230
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F M +PN T LS C + G + ++ Y + PEV +
Sbjct: 231 SAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSG-VQLHTLAVKYGLEPEVAVANTL 289
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
V + +K LE+A L + + V W ++ GC
Sbjct: 290 VSMYAKCQCLEEAWRLFGLMP-RDDLVTWNGMISGC 324
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI+ QN +AL F +M+ SG+ PD VT+A++L A L G
Sbjct: 309 MPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ +DV++ SALVD+Y KC + + VF + ++ +++I G ++
Sbjct: 369 KEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ A+ MF ++ ++PN V S L AC + G+ GY + E
Sbjct: 429 RMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELH-----GYVLKNAYEG 483
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ SK G L D + S + V W +++
Sbjct: 484 RCYVESALMDMYSKCGRL-DLSHYMFSKMSAKDEVTWNSMI 523
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 8/246 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W M+ Y + A+ F M+ SG P+ T+A LS CA L G
Sbjct: 208 MDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G + +V + + LV MYAKC L+ + +F + +L WN +I G +
Sbjct: 268 VQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G +AL +F M ++P+ VT S+L A T ++G+ ++ C + +V
Sbjct: 328 GLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHV---DV 384
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+VD+ K + A + ++K + VI ++ G L+R E A L+
Sbjct: 385 FLVSALVDIYFKCRDVRMAQNVFDATK-SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLA 443
Query: 239 L--EPN 242
L +PN
Sbjct: 444 LGIKPN 449
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI+ W+ MI Y+ N REA++ F EM+ + PD M LS+CA LGAL+LG
Sbjct: 266 MVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ F + +G++L+D YAKCGS++ +L V+ ++EK+ +N++I GLA++
Sbjct: 326 NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMY 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F +M + PN TF+ +L CTHAGLV++GR F SM+ +S+TP +EH
Sbjct: 386 GQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL++AG L++A LI+ + N ++WG+LLGGC+LHR ++A + +L+ LE
Sbjct: 446 YGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELE 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG+ LL N+Y+ RW E KIR + E G++K PG SW+E++ V++F D S
Sbjct: 506 PWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQK-LPGYSWVEVDGVVHEFLVGDTS 564
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S +IY L L + LK A Y P E +L
Sbjct: 565 HPLSQKIYEKLESLFKDLKEAGYNPTTEFVL 595
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 135/252 (53%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT MI + +FREA+D F + SG+ PD + VL ACA LG L+ G
Sbjct: 165 MVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG 224
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I + + G +V++ ++LVDMY KCGS++ + VF + EK++ CW+++I+G A +
Sbjct: 225 RWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASN 284
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F M NV P+ + LS+C G +E G M ++ V
Sbjct: 285 GLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG 344
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MI 238
++D +K G +E+AL + + K + + V++ A++ G ++ + A ++
Sbjct: 345 TS-LIDFYAKCGSMEEALGVYKMMK-EKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFG 402
Query: 239 LEPNNSGYCTLL 250
+ PN + LL
Sbjct: 403 IPPNEHTFVGLL 414
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 4/212 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI +F A+ + M + I PD T + VL ACA L LG IH V
Sbjct: 72 YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVF 131
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GFD DV++ + +V Y+KCG L + VF + KN+ W +I G G EA+
Sbjct: 132 KTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVD 191
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDL 187
+F ++ + P+G + VL AC G +E GR M CG S V +VD+
Sbjct: 192 LFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVA--TSLVDM 249
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+K G +E+A + + + V W A++ G
Sbjct: 250 YTKCGSMEEA-RFVFDGMVEKDIVCWSAMIQG 280
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 208/326 (63%), Gaps = 5/326 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT MI Y + F AL F EM+ S + PD+ TM ++L ACA LGAL+LG
Sbjct: 242 MKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELG 301
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + D ++G+ALVDMY KCG++ ++ VF ++ +K+ F W ++I GLA++
Sbjct: 302 EWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAIN 361
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EALAMF MI +V P+ +T+I VL AC +V++G+ F +MT + I P V H
Sbjct: 362 GHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTH 417
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL G LE+ALE+I + +PN+++WG+ LG C++H+N+++A +A +++ LE
Sbjct: 418 YGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELE 477
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N LL N+YA +W + ++R M E GI K+ PG S +E+ VY+F A D+S
Sbjct: 478 PENGAVYVLLCNIYAASKKWENLCQVRKLMMERGI-KKTPGCSLMELNGNVYEFVAGDQS 536
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY+ L + + L A Y P+
Sbjct: 537 HPQSKEIYAKLENMMQGLIKAGYSPD 562
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 33/219 (15%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A ++++W M++ Y++ KQF+ + M VLSAC+ L L+ G+
Sbjct: 170 ACEVVTWNIMLSGYNRVKQFKIS-----------------KMLLVLSACSKLKDLEWGKH 212
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
I Y+ G + M+A CG +D + VF ++ +++ W ++I+G
Sbjct: 213 IFKYIN----------GGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNH 262
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY- 181
ALA+F M NV+P+ T +S+L AC G +E G TC + + + +
Sbjct: 263 FIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGE---WVKTCIDKNSNKNDSFV 319
Query: 182 -GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G + A ++ + +Q + W ++ G
Sbjct: 320 GNALVDMYFKCGNVRKAKKVFKEM-YQKDKFTWTTMIVG 357
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W TMI YS+ + + M S I PD+ T L AL G
Sbjct: 67 IPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+ + ++ GFD ++++ A + M++ CG +D + VF + WN ++ G
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSG---- 182
Query: 121 GFAHEALAMFDRMIYENVEPNGVT-FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
Y V+ ++ + VLSAC+ +E G+ F + G VE
Sbjct: 183 --------------YNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGI-----VE 223
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
H + + G +++A + + K + + V W A++ G
Sbjct: 224 H------MFAACGEMDEAQGVFDNMKTR-DVVSWTAMIDG 256
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH + +++G D + ++ + G+++ + VF + ++F WN++I+G +
Sbjct: 24 KQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYS 83
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
++M+ M+ N++P+ TF L T ++ G+
Sbjct: 84 KISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGK 127
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 217/329 (65%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT+MI+CY N EAL+ F+ MK +G+ PD +++ ++LSA A L AL G+EI
Sbjct: 583 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEI 642
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ GF ++ + S LVDMYA+CG+L++S VF +R K+L W S+I +HG
Sbjct: 643 HGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCG 702
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F RM E++ P+ + F++VL AC+H+GL+ EGRR SM Y + P EHY C
Sbjct: 703 RAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVC 762
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL +A LE+A + ++ + +P A +W ALLG C++H N E+ IA +L+ ++P N
Sbjct: 763 LVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPEN 822
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ N+YA RW +V ++R+ MK G++K PG SWIE+ KV+ F A DKSHP
Sbjct: 823 PGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKN-PGCSWIEVGNKVHTFMARDKSHPQ 881
Query: 304 SDEIYSSLSKLDEQL-KLASYVPELEAML 331
S EIYS LS++ E+L K YV + + +L
Sbjct: 882 SYEIYSKLSQITEKLAKEGGYVAQTKFVL 910
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 4/222 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ISW +M++ + QN + EAL ++EM+++G PD V + ++++A A G G +IH
Sbjct: 383 DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIH 442
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y M+ G D D+ +G++LVDMYAK S+ +F K+ +K++ W +II G A +G
Sbjct: 443 AYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHS 502
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F + E ++ + + S+L AC+ L+ + S ++ V G +
Sbjct: 503 RALELFREVQLEGIDLDVMMISSILLACSGLKLISS-VKEIHSYIIRKGLSDLVLQNG-I 560
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
VD+ + G ++ A + +F+ + V W +++ C +H L
Sbjct: 561 VDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGL 600
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 127/228 (55%), Gaps = 13/228 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SWTT+I ++QN AL+ F E++ GI D + ++++L AC+ L +
Sbjct: 480 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 539
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G D+ + + +VD+Y +CG++D + +F + K++ W S+I +
Sbjct: 540 KEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHN 598
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G A+EAL +F M VEP+ ++ +S+LSA +++G+ FL + G+ + +
Sbjct: 599 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFL-IRKGFVLEGSL 657
Query: 179 EHYGCMVDLLSKAGLLE---DALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ ++ G LE + IR+ V+W +++ +H
Sbjct: 658 A--STLVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINAYGMH 699
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MPAR-DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP + D++SW +MI+ YS N Q EAL F EM+ + ++P+ T L AC +
Sbjct: 277 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 336
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH V++ + I+V++ +AL+ MYA+ G + + +F+ + + + WNS++ G
Sbjct: 337 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 396
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+G HEAL + M +P+ V IS+++A +G
Sbjct: 397 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 433
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + I +W MI Y N + +L+ + EM+ SGI D T +L AC L G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV 119
E+H ++ G+ V++ +++V MY KC L+ + +F ++ EK ++ WNS+I +
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+G + EAL +F M ++ PN TF++ L AC + +++G
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 337
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 11/206 (5%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID- 75
S N+ F+ D F S S D+ ++VL C AL G+++H +++ +
Sbjct: 91 SVNEAFQSLTDLFANQSPSQFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSNALFNS 149
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
V++ + LV MY KCG L + +F + K +F WN++I +G +L ++ M
Sbjct: 150 VFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRV 209
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGR----RRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
+ + TF +L AC GL+++ R L++ GY V + +V + +K
Sbjct: 210 SGIPLDACTFPCILKAC---GLLKDRRCGAEVHGLAIKEGYVSIVFVAN--SIVGMYTKC 264
Query: 192 GLLEDALELIRSSKFQPNAVIWGALL 217
L A +L + + V W +++
Sbjct: 265 NDLNGARQLFDRMPEKEDVVSWNSMI 290
>gi|222640613|gb|EEE68745.1| hypothetical protein OsJ_27435 [Oryza sativa Japonica Group]
Length = 461
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 213/334 (63%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALD 58
MP RD I+W +ITCY++N++ ++AL F+ M+ +G PD VT +L AC LGALD
Sbjct: 1 MPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALD 60
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++ Y + G+ ++ + ++L+ MY KCG +D++ VF + +K++ W+++I GLA
Sbjct: 61 FGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLA 120
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+GF +A++ F+ M V P+ TF VLSAC+H+GLV+EG + F M Y + P V
Sbjct: 121 SNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNV 180
Query: 179 EHYGCMVDLLSKAGLLEDALEL-IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
HYGCMVDL+ +AGLL+ A EL ++ + P+A IW LLG C++H ++++ +N L+
Sbjct: 181 HHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLI 240
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN YA V W +V ++R MKE GI+ PG + +E+ ++++F A+
Sbjct: 241 ELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTT-PGCTTVELNGEIHEFIAA 299
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP EIY L ++++ L++A YVP + + L
Sbjct: 300 DASHPRKAEIYEKLDEINKHLRIAGYVPNVSSEL 333
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 206/340 (60%), Gaps = 15/340 (4%)
Query: 1 MPARDIISWT-------------TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATV 47
MP R++++WT TMI Y + EAL F+ M+ G+ P ++ +V
Sbjct: 144 MPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISV 203
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL 107
LS C L +LD GR++H +++ FDID+Y+ S L+ MY KCG L + VF + K++
Sbjct: 204 LSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDI 263
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
WNSII G A HGF +AL +F M ++ P+ +TFI VLSAC++ G V+EG F S
Sbjct: 264 VMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFES 323
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
M Y + P+ EHY CMVDLL +AG L +A+ LI + + +A++WGALLG C+ H+NL+
Sbjct: 324 MKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLD 383
Query: 228 IAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
+A IA +L+ LEPNN+G LL N+Y+ SRW +V ++R M+ + K PG SWIE+
Sbjct: 384 LAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRK-SPGCSWIEV 442
Query: 288 ERKVYQFA-ASDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
++KV+ F+ SHP + I L KL L+ A Y P+
Sbjct: 443 DKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPD 482
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 39/253 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI Y Q EA F M + V+ +L G +D
Sbjct: 51 MPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV----VSWTVMLGGLIEDGRVDEA 106
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R++ FD+ DV + ++D G L + +F ++ ++N+ W S+I G
Sbjct: 107 RQL--------FDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG 158
Query: 117 -------------LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
GF EALA+F M E V P+ + ISVLS C ++ G R
Sbjct: 159 EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHG-R 217
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR--SSKFQPNAVIWGALLGGCK 221
+ S ++ ++ + K G L A + SSK + V+W +++ G
Sbjct: 218 QVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK---DIVMWNSIIAGYA 274
Query: 222 LH----RNLEIAH 230
H + LE+ H
Sbjct: 275 QHGFGEKALEVFH 287
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ LV Y + G + + VF K+ E+N+ W ++I G G EA +F RM NV
Sbjct: 29 NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV- 87
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
V++ +L G V+E R+ F M +V M+D L G L +A E
Sbjct: 88 ---VSWTVMLGGLIEDGRVDEARQLFDMMP-----VKDVVASTNMIDGLCSEGRLIEARE 139
Query: 200 LIRSSKFQPNAVIWGALLGGCK 221
+ Q N V W +++ G K
Sbjct: 140 IFDEMP-QRNVVAWTSMISGEK 160
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 216/330 (65%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW ++I QN +F + L F M + P QV+ ++V+ ACAHL AL+LG+++
Sbjct: 263 RDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQL 322
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEGLAVHG 121
H Y++++GFD + +I S+L+DMYAKCG++ + +F K+ ++++ W +II G A+HG
Sbjct: 323 HAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHG 382
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A +A+++F+ M+ + V+P V F++VL+AC+HAGLV+EG + F SM + + P +EHY
Sbjct: 383 HALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHY 442
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
+ DLL +AG LE+A + I + +P +W LL C+ H+N+E+A VN++++++P
Sbjct: 443 AAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDP 502
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N G ++ N+Y+ RW + K+RV M++ G+ K+ P SWIE+ KV+ F A DKSH
Sbjct: 503 GNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGL-KKTPACSWIEVGNKVHTFLAGDKSH 561
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P D+I +L+ L EQ++ YV + +L
Sbjct: 562 PYYDKINEALNILLEQMEKEGYVLDTNEVL 591
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T+I +QN + EAL+ EM + PD T++++L + G
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKG 218
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y ++ GFD DV+IGS+L+DMYAKC ++ S+ F L ++ WNSII G +
Sbjct: 219 KEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQN 278
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G + L F RM+ E V+P V+F SV+ AC H + G++ + G+ +
Sbjct: 279 GRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA 338
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKF-QPNAVIWGALLGGCKLH 223
++D+ +K G ++ A + + + V W A++ GC +H
Sbjct: 339 --SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 38/243 (15%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W +I CY+ + R +L +FN +++ GISPD+ ++L A +L + +H
Sbjct: 42 LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101
Query: 67 VMQIGFDIDVYIGSALVDMYAKCG----------------------SLDRSLLVFFKLRE 104
V+++GF D+Y +AL++MY+K +D +F ++
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
+++ WN++I G A +G EAL M M EN+ P+ T S+L T V +G+
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKE- 220
Query: 165 FLSMTCGYSI----TPEVEHYGCMVDLLSKAGLLE---DALELIRSSKFQPNAVIWGALL 217
GY+I +V ++D+ +K +E A L+ + +A+ W +++
Sbjct: 221 ----IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR----DAISWNSII 272
Query: 218 GGC 220
GC
Sbjct: 273 AGC 275
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 210/325 (64%), Gaps = 2/325 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH-LGALDLGR 61
A+D+++W+ M+ Y+Q + EA F+++ GI P++ T ++V++ACA A + G+
Sbjct: 456 AKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGK 515
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ H Y +++ + + + SALV MYAK G++D + VF + +E++L WNS+I G + HG
Sbjct: 516 QFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHG 575
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A +AL +FD M N++ + VTFI V++ACTHAGLVE+G++ F SM + I P ++HY
Sbjct: 576 QAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHY 635
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CM+DL S+AG+LE A+ +I F P A +W LLG ++HRN+E+ +A +L+ L+P
Sbjct: 636 SCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQP 695
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+S LL NMYA W E T +R M + ++K PG SWIE++ K Y F A D +H
Sbjct: 696 EDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKE-PGYSWIEVKNKTYSFLAGDLTH 754
Query: 302 PASDEIYSSLSKLDEQLKLASYVPE 326
P S++IYS LS+L +LK A Y P+
Sbjct: 755 PLSNQIYSKLSELSIRLKDAGYQPD 779
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 124/223 (55%), Gaps = 7/223 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT+++ YS N + + F +M+ G+ P++ T++TV++A + G + +G
Sbjct: 154 MGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIG 213
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V++ GF+ + + ++L+ +Y++ G L + VF K+ ++ WNS+I G +
Sbjct: 214 LQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRN 273
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL---SMTCGYSITPE 177
G E +F++M V+P +TF SV+ +C A L E + + ++ G++ T +
Sbjct: 274 GQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC--ASLRELALVKLMQCKALKSGFT-TDQ 330
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ MV LSK ++DAL L + N V W A++ GC
Sbjct: 331 IVITALMV-ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGC 372
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 125/223 (56%), Gaps = 7/223 (3%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD--LGREIHLYVMQ 69
++ YS++KQ +EAL+ F + +S + PD+ T++ V + CA G+LD LGR++H ++
Sbjct: 64 LLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICA--GSLDGKLGRQVHCQCVK 121
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
G V +G++LVDMY K +++ VF ++ E+N+ W S++ G + +G +
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189
F +M YE V PN T +V++A + G+V G + +M + + + ++ L S
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISLYS 240
Query: 190 KAGLLEDALELIRSSKFQPNAVIWGALLGG-CKLHRNLEIAHI 231
+ G+L DA ++ + + + V W +++ G + ++LE+ I
Sbjct: 241 RLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLEVFEI 282
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 119/225 (52%), Gaps = 13/225 (5%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++++SWT MI+ QN +A++ F++M+ G+ P+ T + +L+ + E
Sbjct: 359 GKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPV----FVSE 414
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H V++ ++ +G+AL+D Y K G+ ++ VF + K+L W++++ G A G
Sbjct: 415 MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGE 474
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA +F ++I E ++PN TF SV++AC E ++F + Y+I + +
Sbjct: 475 TEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHA----YAIKMRLNNAL 530
Query: 183 C----MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
C +V + +K G ++ A E+ + K + + V W +++ G H
Sbjct: 531 CVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQH 574
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 199/328 (60%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RDI SWT +I+ Y+Q Q +A+ F +M+ GI P++ T+A+ LS C+H+ L+ GR++
Sbjct: 317 RDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL 376
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ G D+++GSALVD+Y KCG ++ + +F L +++ WN+II G + HG
Sbjct: 377 HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQG 436
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL F M+ E + P+ TFI VLSAC+ GLVEEG++RF SM+ Y I P +EHY C
Sbjct: 437 EKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYAC 496
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L +AG + I P ++IW +LG CKLH N++ A +L +EP
Sbjct: 497 MVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMM 556
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N++A RW +V IR M GI+K PG SW+E++ +V+ F + D SHP
Sbjct: 557 DSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKE-PGCSWVEVDGQVHVFLSQDGSHPK 615
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
EIY+ L KL + L YVP+ E +L
Sbjct: 616 IREIYAKLDKLGQSLMSIGYVPKTEVVL 643
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW ++ Y+Q ++ L F +MK + T++TVL CA+ G+L G
Sbjct: 11 MPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREG 70
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ G +ID ++G +LVDMY+KCG++ +L VF K+R ++ W+++I GL
Sbjct: 71 KVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQ 130
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F M + PN T S++S T+ G + G + C Y +
Sbjct: 131 GHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG-QSIHGCICKYGFESDNLV 189
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + K+ +ED ++ + P+ V W ALL G
Sbjct: 190 SNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 14/235 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D++SW +++ + ++ F +M G P+ T +VL +C+ L + G
Sbjct: 213 MTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFG 272
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++++ D D ++G+ALVDMYAK L+ + + F +L +++F W II G A
Sbjct: 273 KQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQT 332
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A +A+ F +M E ++PN T S LS C+H +E GR+ +++ + H
Sbjct: 333 DQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGH 385
Query: 181 YG------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+G +VDL K G +E A E I + V W ++ G H E A
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHA-EAIFKGLISRDIVSWNTIISGYSQHGQGEKA 439
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+RDI+SW T+I+ YSQ+ Q +AL+AF M + GI PD+ T VLSAC+ +G ++ G++
Sbjct: 417 SRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKK 476
Query: 63 IHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL----FCWNSIIEGL 117
+ +I G + + + +VD+ + G + V + E NL W +++
Sbjct: 477 RFDSMSKIYGINPSIEHYACMVDILGRAGKFNE---VKIFIEEMNLTPYSLIWETVLGAC 533
Query: 118 AVHG 121
+HG
Sbjct: 534 KLHG 537
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+FF + EKN WN+++ G A G + L +F +M + + T +VL C + G
Sbjct: 7 LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGS 66
Query: 158 VEEGR-RRFLSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ EG+ L++ G I E GC +VD+ SK G + DAL++ + P+ V W A
Sbjct: 67 LREGKVLHALALRSGCEID---EFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDVVAWSA 122
Query: 216 LLGG 219
++ G
Sbjct: 123 MITG 126
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW+ MI Y +N EA + F+ MK S I PD VT +L+AC HLGALD+G
Sbjct: 421 MPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVG 480
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EI+ ++ V +G+AL+ M AK GS++R+ +F + +++ WN++I G ++H
Sbjct: 481 MEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLH 540
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +FDRM+ E PN VTF+ VLSAC+ AG V+EGRR F + G I P V+
Sbjct: 541 GNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKL 600
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A LI+S +P + IW +LL C++H NL++A A ++++
Sbjct: 601 YGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMID 660
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + L +MYA W V K+R M+ GI K G +WIE+ KV+ F D+S
Sbjct: 661 PYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKE-QGCTWIEVAGKVHTFVVEDRS 719
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EIY+ L++L +K Y+P + +L
Sbjct: 720 HPLVGEIYAELARLMNAIKREGYIPITQNVL 750
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 133/252 (52%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT MI Y++N +A F M+ GI PD++T +++ACA L+
Sbjct: 320 MKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA 379
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH V GF D+ + +ALV MYAKCG++ + VF + +++ W+++I +
Sbjct: 380 REIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVEN 439
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA F M N+EP+GVT+I++L+AC H G ++ G + + + V
Sbjct: 440 GYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIY-TQAIKADLVSHVPL 498
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++ + +K G +E A I + + + + W A++GG LH N A + ++
Sbjct: 499 GNALIIMNAKHGSVERA-RYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKER 557
Query: 239 LEPNNSGYCTLL 250
PN+ + +L
Sbjct: 558 FRPNSVTFVGVL 569
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 151/318 (47%), Gaps = 40/318 (12%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +++W +I Y+Q +EA F +M + G+ P +T +VL AC+ L+ G+E+
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEV 180
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+ GF D IG+ALV MY K GS+D + VF L +++ +N ++ G A G
Sbjct: 181 HAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDW 240
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSA----------------CTHAGLVEEGR--RRF 165
+A +F RM ++PN ++F+S+L C +AGLV++ R
Sbjct: 241 EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSL 300
Query: 166 LSM--TCGYSI-----------TPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPN 209
+ M TCG SI +V + M++ ++ G +EDA L ++ QP+
Sbjct: 301 IRMYTTCG-SIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPD 359
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269
+ + ++ C + NL A +++ I +G+ T LL A V +A+ I+ A
Sbjct: 360 RITYMHIMNACAISANLNHAREIHSQVDI-----AGFGTDLLVSTALVHMYAKCGAIKDA 414
Query: 270 MKELGIEKRCPGSSWIEM 287
+ R SW M
Sbjct: 415 RQVFDAMPRRDVVSWSAM 432
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 39/232 (16%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
A D + G D T + C L LG+++ +++Q G +++Y + L+
Sbjct: 41 ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
+Y+ CG++ + +F + K + WN++I G A G EA A+F +M+ E +EP+ +T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160
Query: 145 FISVLSACT-----------HAGLVEEGRRRFLS-MTCGYSITP---------------- 176
F+SVL AC+ HA +V G F+S G ++
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAG---FVSDFRIGTALVSMYVKGGSMDDARQVFD 217
Query: 177 -----EVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
+V + MV +K+G E A EL ++ +PN + + ++L GC
Sbjct: 218 GLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 209/329 (63%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
R +SW MI Y+QN + EAL+ F+EMK+ G+ PD TM +V+ A A L +
Sbjct: 412 GRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW 471
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D ++++ +ALVDMY+KCG++ + +F + ++++ WN++I+G HG
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGL 531
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
AL +FD+M VEPN +T++SV+SAC+H+GLV+EG R F SM Y + P ++HYG
Sbjct: 532 GRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
MVDLL +AG +++A + I + P ++GA+LG CK+H+N+E+ A +L L P+
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPD 651
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
GY LL N+YA S+W++V ++R M++ G+ K+ PG S +E+ +V+ F + +HP
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGL-KKTPGCSVVELRNEVHSFYSGSTTHP 710
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
S IY+ L +L ++K A YVP+ +L
Sbjct: 711 QSKRIYAFLEELVYEIKAAGYVPDTNLIL 739
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 105/162 (64%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T+I +SQN ++AL+ M++ G PD +T+ TVL A A +G L +G
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y ++ GF V I +AL DMY+KCGS++ + L+F + +K + WNS+++G +
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G +A+A+F++M+ E ++P GVT + L AC G +E G+
Sbjct: 328 GEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGK 369
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW +M+ Y QN + +A+ F +M GI P VT+ L ACA LG L+ G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +V Q+ D+ + ++L+ MY+KC +D + +F L + WN++I G A +
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G EAL F M ++P+ T +SV+ A + + + +C + +
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC---LDKNI 485
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM- 237
+VD+ SK G + A +L + + + W A++ G H L A + + + M
Sbjct: 486 FVTTALVDMYSKCGAIHMARKLFDMISDR-HVITWNAMIDGYGTH-GLGRAALDLFDKMK 543
Query: 238 --ILEPNNSGYCTLL 250
+EPN+ Y +++
Sbjct: 544 KGAVEPNDITYLSVI 558
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 11/251 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ Y++N AL M+ + P +L C L G+EIH ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
F +V+ + +V+MYAKC +D + +F ++ E++L WN+II G + +GFA +AL
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCM 184
+ RM E P+ +T ++VL A GL+ G+ GY+I V +
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS-----IHGYAIRAGFAKLVNISTAL 289
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
D+ SK G +E A LI Q V W +++ G + E A IAV E M+ E +
Sbjct: 290 ADMYSKCGSVETA-RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA-IAVFEKMLEEGIDP 347
Query: 245 GYCTLLLNMYA 255
T++ ++A
Sbjct: 348 TGVTIMEALHA 358
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
A +L C + L +I V++ G + + LV +++K GS++ + VF + +
Sbjct: 53 AVLLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDD 109
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
K ++++++G A + ALA RM Y++V+P F +L C ++ G+
Sbjct: 110 KLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEI 169
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ S V +V++ +K ++DA ++ + + V W ++ G
Sbjct: 170 HGQLITN-SFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAG 222
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 207/317 (65%), Gaps = 1/317 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A+D ++W +MI+ ++QN + EAL+ F EM G+ VT+++VLSACA L A+ G+E
Sbjct: 512 AKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKE 571
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ D++ SAL+DMY KCG+L+ + VF + EKN WNSII +G
Sbjct: 572 IHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGL 631
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E++++ M E + + VTF++++SAC HAG V+EG R F MT Y I P +EH+
Sbjct: 632 VKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFA 691
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL S+AG L+ A+ELI F+P+A IWGALL C++HRN+E+A IA EL L+P+
Sbjct: 692 CMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPH 751
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSGY L+ N+ A RW V+K+R MK+ ++K PG SW+++ + F A+DKSHP
Sbjct: 752 NSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQK-IPGYSWVDVNNTSHLFVAADKSHP 810
Query: 303 ASDEIYSSLSKLDEQLK 319
S++IY SL + +L+
Sbjct: 811 DSEDIYMSLKSILLELR 827
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 158/323 (48%), Gaps = 19/323 (5%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A D++ +TMI+ Y N +EA+ F + GI P+ V +A+VL ACA + A+ LG+E
Sbjct: 411 AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE 470
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y ++ ++ Y+ SAL+DMYAKCG LD S +F K+ K+ WNS+I A +G
Sbjct: 471 LHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGE 530
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F M E V+ + VT SVLSAC + G+ + G I ++
Sbjct: 531 PEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG-PIRADLFAES 589
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
++D+ K G LE A + S + N V W +++ + L +++ M E
Sbjct: 590 ALIDMYGKCGNLEWAHRVFESMP-EKNEVSWNSIIASYGAY-GLVKESVSLLRHMQEEGF 647
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+ + T L A VS A +++ ++ RC + YQ A +
Sbjct: 648 KADHVTFL----ALVSACAHAGQVQEGLRLF----RC--------MTEEYQIAPRMEHFA 691
Query: 303 ASDEIYSSLSKLDEQLKLASYVP 325
++YS KLD+ ++L +P
Sbjct: 692 CMVDLYSRAGKLDKAMELIVDMP 714
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 116/218 (53%), Gaps = 4/218 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI+ QN +AL F +M+ SGI PD VT+ ++L A L + G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ +DV++ SALVD+Y KC ++ + V+ + ++ +++I G ++
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLN 427
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G + EA+ MF ++ + + PN V SVL AC ++ G+ ++ Y VE
Sbjct: 428 GMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE 487
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ +K G L D I S + V W +++
Sbjct: 488 --SALMDMYAKCGRL-DLSHYIFSKISAKDEVTWNSMI 522
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W M+ Y + A++ F +M+ SG P+ T+A LS A L G
Sbjct: 207 MAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ G + +V + + LV MYAKC LD +F + +L WN +I G +
Sbjct: 267 VQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQN 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF +AL +F M + P+ VT +S+L A T +G+
Sbjct: 327 GFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGK 368
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 4/216 (1%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ W +I + +R AL + +M S PD T V+ +CA LGA+ LGR +H
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+G D D+++GSAL+ MYA G L + VF + E++ WN +++G G
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F M EPN T LS + G + ++ Y + EV +
Sbjct: 230 SAVELFGDMRASGCEPNFATLACFLSVSATESDLFFG-VQLHTLAVKYGLESEVAVANTL 288
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
V + +K L+D +L + + V W ++ GC
Sbjct: 289 VSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGC 323
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW ++I Y +E++ M+ G D VT ++SACAH G + G
Sbjct: 611 MPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEG 670
Query: 61 REIHLYVM---QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEG 116
+ + QI ++ + + +VD+Y++ G LD+++ + + K + W +++
Sbjct: 671 LRLFRCMTEEYQIAPRMEHF--ACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHA 728
Query: 117 LAVH 120
VH
Sbjct: 729 CRVH 732
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 214/333 (64%), Gaps = 4/333 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M++ ++QN + REA+ F +M+ G+ D++T+ V+SACA LGA
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYA 298
Query: 61 REIHLYV--MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
I + G V +GSAL+DMY+KCGS+ + VF ++E+N++ ++S+I G A
Sbjct: 299 DWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFA 358
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG H+A+ +FD M+ ++PN VTFI VL+AC+HAG+VE+G + F M Y I P
Sbjct: 359 MHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSA 418
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVDLL +AG L++A EL+++ +P+ +WGALLG C++H++ +IA IA N L
Sbjct: 419 DHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFE 478
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK-VYQFAAS 297
LEP G LL N+YA RW +V+ +R M+ G+ K P SWIE E+ V++F +
Sbjct: 479 LEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKN-PAFSWIESEKGMVHEFFSG 537
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
D +HP S EI +L L ++L+ Y P L ++
Sbjct: 538 DMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSV 570
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 36/277 (12%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I Y ++ +E+ + ++ M+ G+ P T + AC + LGR+IH +
Sbjct: 114 YNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTI 173
Query: 69 QIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII------------- 114
+G F D+++G++++DMY KCG L+ VF ++ +++ W +I
Sbjct: 174 LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAG 233
Query: 115 ---EGLAVH----------GFAH-----EALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+GL V GFA EA+ F++M VE + +T I V+SAC G
Sbjct: 234 ELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLG 293
Query: 157 LVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ R ++ + V ++D+ SK G + DA + + K + N + +
Sbjct: 294 AAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMK-ERNVYSYSS 352
Query: 216 LLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLL 250
++ G +H + A +E++ E PN + +L
Sbjct: 353 MILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVL 389
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 97/237 (40%), Gaps = 13/237 (5%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-SLDR-SLLVFFK 101
+ T L C +L + +++H ++ G D Y+ + L+ K +D L +F +
Sbjct: 49 IVTTLDGCKNLTQI---KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ N F +N++I G + E+ + M E V P TF ++ AC V G
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG 165
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN--AVIWGALLGG 219
R+ ++ M+D+ K G LE ++ PN + W L+
Sbjct: 166 RQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDE---MPNRDVISWTELISA 222
Query: 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
N+E A + L + + T++++ +A+ ++ E M+E G+E
Sbjct: 223 YVKSGNMESAGELFDGLPV---KDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVE 276
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT+MI+CY N EAL+ F+ MK +G+ PD +++ ++LSA A L AL G+EI
Sbjct: 547 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEI 606
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ GF ++ + S LVDMYA+CG+L++S VF +R K+L W S+I +HG
Sbjct: 607 HGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCG 666
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F RM E++ P+ + F++VL AC+H+GL+ EGRR SM Y + P EHY C
Sbjct: 667 RAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYAC 726
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL +A LE+A + ++ + +P A +W ALLG C++H N E+ IA +L+ ++P N
Sbjct: 727 LVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPEN 786
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ N+Y+ RW +V +R+ MK G++K PG SWIE+ KV+ F A DKSHP
Sbjct: 787 PGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKN-PGCSWIEVGNKVHTFMARDKSHPQ 845
Query: 304 SDEIYSSLSKLDEQL-KLASYVPELEAML 331
S EIYS LS++ E+L K YV + + +L
Sbjct: 846 SYEIYSKLSQITEKLAKEGGYVAQTKFVL 874
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 4/222 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ISW +M++ + QN + EAL ++EM+++G PD V + ++++A A G G +IH
Sbjct: 347 DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIH 406
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y M+ G D D+ +G++LVDMYAK S+ +F K+ +K++ W +II G A +G
Sbjct: 407 AYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHS 466
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL +F + E ++ + + S+L AC+ L+ + S ++ V G +
Sbjct: 467 RALELFREVQLEGIDLDVMMISSILLACSGLKLISS-VKEIHSYIIRKGLSDLVLQNG-I 524
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
VD+ + G ++ A + +F+ + V W +++ C +H L
Sbjct: 525 VDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVHNGL 564
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 128/228 (56%), Gaps = 13/228 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SWTT+I ++QN AL+ F E++ GI D + ++++L AC+ L +
Sbjct: 444 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSV 503
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G D+ + + +VD+Y +CG++D + +F + K++ W S+I +
Sbjct: 504 KEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHN 562
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G A+EAL +F M VEP+ ++ +S+LSA +++G+ FL + G+ + +
Sbjct: 563 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFL-IRKGFVLEGSL 621
Query: 179 EHYGCMVDLLSKAGLLE---DALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ ++ G LE + IR+ + V+W +++ +H
Sbjct: 622 A--STLVDMYARCGTLEKSRNVFNFIRNK----DLVLWTSMINAYGMH 663
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MPAR-DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP + D++SW +MI+ YS N Q EAL F EM+ + ++P+ T L AC +
Sbjct: 241 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 300
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH V++ + I+V++ +AL+ MYA+ G + + +F+ + + + WNS++ G
Sbjct: 301 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 360
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+G HEAL + M +P+ V IS+++A +G
Sbjct: 361 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 397
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + I +W MI Y N + +L+ + EM+ SGI D T +L AC L G
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV 119
E+H ++ G+ V++ +++V MY KC L+ + +F ++ EK ++ WNS+I +
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+G + EAL +F M ++ PN TF++ L AC + +++G
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 301
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 17/209 (8%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID- 75
S N+ F+ D F S S D+ ++VL C AL G+++H +++ +
Sbjct: 55 SVNEAFQSLTDLFANQSPSQFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSNALFNS 113
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
V++ + LV MY KCG L + +F + K +F WN++I +G +L ++ M
Sbjct: 114 VFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRV 173
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY-------GCMVDLL 188
+ + TF +L AC GL+++ RR+ + G +I E Y +V +
Sbjct: 174 SGIPLDACTFPCILKAC---GLLKD--RRYGAEVHGLAIK---EGYVSIVFVANSIVGMY 225
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALL 217
+K L A +L + + V W +++
Sbjct: 226 TKCNDLNGARQLFDRMPEKEDVVSWNSMI 254
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 204/331 (61%), Gaps = 2/331 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R+++SW +++ ++ N + E L F EM +PD T+ +VL+ACA +G L LGR
Sbjct: 186 PERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGR 245
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+H++V ++G + + G+AL+D+YAKCG +D + +F ++ + + W S+I GLAV+
Sbjct: 246 RVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVN 305
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +AL +F M E + P +T + VL AC+H GLV++G R F M Y ITP +EH
Sbjct: 306 GFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEH 365
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
GCMVDLL +AG +E+A I + +PNAV+W LLG C +H+ LEI A L+ L+
Sbjct: 366 LGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELD 425
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+YA V RWA+V +R M G+ K PG S +E+ VY+F D+S
Sbjct: 426 PGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKN-PGHSLVELRNSVYEFVMGDRS 484
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +D+IY L + E+L+ Y+P +L
Sbjct: 485 HPETDQIYEMLGDIAERLRRQGYIPHTSNVL 515
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P+ D S T++ ++ + + R AL + PD T +L ACA L AL G
Sbjct: 85 LPSPDPFSLNTVLRIFASSARPRVALALH---RRHLAPPDTHTYPPLLQACARLLALRYG 141
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL--REKNLFCWNSIIEGLA 118
+H + G V++ ++LV +Y CG + + VF ++ E+NL WNS++ G A
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFA 201
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G +E L +F M+ P+G T +SVL+AC G++ GRR + +
Sbjct: 202 ANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHV-FVAKVGLVGNA 260
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL +K G ++DA ++ V W +L+ G
Sbjct: 261 HAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVG 301
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 213/334 (63%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALD 58
MP RD I+W +ITCY++N++ ++AL F+ M+ +G PD VT +L AC LGALD
Sbjct: 186 MPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALD 245
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++ Y + G+ ++ + ++L+ MY KCG +D++ VF + +K++ W+++I GLA
Sbjct: 246 FGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLA 305
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+GF +A++ F+ M V P+ TF VLSAC+H+GLV+EG + F M Y + P V
Sbjct: 306 SNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNV 365
Query: 179 EHYGCMVDLLSKAGLLEDALEL-IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
HYGCMVDL+ +AGLL+ A EL ++ + P+A IW LLG C++H ++++ +N L+
Sbjct: 366 HHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLI 425
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN YA V W +V ++R MKE GI+ PG + +E+ ++++F A+
Sbjct: 426 ELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQT-TPGCTTVELNGEIHEFIAA 484
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP EIY L ++++ L++A YVP + + L
Sbjct: 485 DASHPRKAEIYEKLDEINKHLRIAGYVPNVSSEL 518
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Query: 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111
H AL R++H V+ G D + ++LV YA CG D + VF ++ ++ WN
Sbjct: 136 GHCRALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWN 195
Query: 112 SIIEGLAVHGFAHEALAMFDRMI--YENVEPNGVTFISVLSACTHAGLVEEGRRRF-LSM 168
+I + +AL +FD M EP+ VT I +L ACT G ++ G + + ++
Sbjct: 196 VLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAV 255
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GY E++ ++ + +K G ++ A ++ + + + V W A++ G
Sbjct: 256 DHGYG--GELKVRNSLITMYTKCGCVDKAYQVFCETP-KKSVVTWSAMISG 303
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 196/308 (63%), Gaps = 1/308 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++ISWTTMI + + +EAL +M +GI PD +T++ LSACA LGAL+ G
Sbjct: 202 MPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + ID +G L DMY KCG ++++LLVF KL +K + W +II GLA+H
Sbjct: 262 KWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIH 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +M + PN +TF ++L+AC+HAGL EEG+ F SM+ Y+I P +EH
Sbjct: 322 GKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEH 381
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL+ +AGLL++A E I S +PNA IWGALL C+LH++ E+ L+ L+
Sbjct: 382 YGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELD 441
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG L ++YA W +V ++R +K G+ PG S I + V++F A D S
Sbjct: 442 PDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNH-PGCSSITLNGVVHEFFAGDGS 500
Query: 301 HPASDEIY 308
HP EIY
Sbjct: 501 HPHIQEIY 508
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 39/253 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ + W TM+ YS + AL +++M ++ + + T +L AC+ L A + ++IH
Sbjct: 74 NTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIH 133
Query: 65 LYVMQIGFDIDVYIGSAL-------------------------------VDMYAKCGSLD 93
++++ GF ++VY ++L +D Y K G+LD
Sbjct: 134 AHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLD 193
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F + EKN+ W ++I G G EAL++ +M+ ++P+ +T LSAC
Sbjct: 194 MAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACA 253
Query: 154 HAGLVEEGRRRFLSMTCG-YSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNAV 211
G +E+G+ + I P + GC + D+ K G +E AL + SK + V
Sbjct: 254 GLGALEQGKWIHTYIEKNEIKIDPVL---GCVLTDMYVKCGEMEKALLVF--SKLEKKCV 308
Query: 212 -IWGALLGGCKLH 223
W A++GG +H
Sbjct: 309 CAWTAIIGGLAIH 321
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG--SLDR 94
+ P+ +L C+++ L +IH +++ G + S L+ YA+ +L
Sbjct: 6 LPPNTEQTQALLERCSNMKEL---MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAY 62
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +VF + N WN+++ + AL ++ +M++ +V N TF +L AC+
Sbjct: 63 TRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSA 122
Query: 155 AGLVEEGRR 163
EE ++
Sbjct: 123 LSAFEETQQ 131
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 211/327 (64%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+TMI Y+QN + E+L+ F MK + P++VT+ VLSACA LG+ +LG
Sbjct: 277 MQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELG 336
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I +V + Y+GSAL+DMY KCG + R+ VF ++ K + WNS++ GLA++
Sbjct: 337 GQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALN 396
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A+ ++ M E+V+PN +TF+++L+ACTHAGLV++G F M + ++P+VEH
Sbjct: 397 GFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEH 456
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A ++L++LE
Sbjct: 457 CACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLE 516
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NS LL N+YA+ W +V +IR M+ ++K SWIE++ +V++F D
Sbjct: 517 PDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQK-LSAYSWIELDGEVHKFLVQDTY 575
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EI++ + + L P+L
Sbjct: 576 HPKSAEIFNVVDGMGLHLDDVDSDPDL 602
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 34/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R SW +MI CY+ +++EAL F M + G P+ +T+AT+ S CA G L+ G
Sbjct: 177 MVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETG 236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + ++ + +AL++MY KC ++D + F +++++++ W+++I G A +
Sbjct: 237 KWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQN 295
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-------RFLSMT---- 169
G HE+L +F+RM + +PN VT + VLSAC G E G + + L +T
Sbjct: 296 GRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLG 355
Query: 170 ---------CGY-----SITPEVEH-----YGCMVDLLSKAGLLEDALELIR---SSKFQ 207
CG+ S+ +EH + M+ L+ G +DA+ L + Q
Sbjct: 356 SALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQ 415
Query: 208 PNAVIWGALLGGC 220
PN + + ALL C
Sbjct: 416 PNEITFVALLTAC 428
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 31/183 (16%)
Query: 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI 70
T+I+ S+ +E LDAF+ + G + V+ +CA L A G+++H + +
Sbjct: 55 TLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVR 114
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL----------------------REKNLF 108
G D+++ +ALVD YAK G +D ++ VF ++ + + LF
Sbjct: 115 GLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLF 174
Query: 109 ---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
WNS+I A G EAL +F RM+ E PN +T ++ S C G +E
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLE 234
Query: 160 EGR 162
G+
Sbjct: 235 TGK 237
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 211/327 (64%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+TMI Y+QN + E+L+ F MK + P++VT+ VLSACA LG+ +LG
Sbjct: 277 MQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELG 336
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I +V + Y+GSAL+DMY KCG + R+ VF ++ K + WNS++ GLA++
Sbjct: 337 GQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALN 396
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A+ ++ M E+V+PN +TF+++L+ACTHAGLV++G F M + ++P+VEH
Sbjct: 397 GFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEH 456
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A ++L++LE
Sbjct: 457 CACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLE 516
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NS LL N+YA+ W +V +IR M+ ++K SWIE++ +V++F D
Sbjct: 517 PDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQK-LSAYSWIELDGEVHKFLVQDTY 575
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EI++ + + L P+L
Sbjct: 576 HPKSAEIFNVVDGMGLHLDDVDSDPDL 602
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 34/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R SW +MI CY+ +++EAL F M + G P+ +T+AT+ S CA G L+ G
Sbjct: 177 MVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETG 236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + ++ + +AL++MY KC ++D + F +++++++ W+++I G A +
Sbjct: 237 KWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQN 295
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-------RFLSMT---- 169
G HE+L +F+RM + +PN VT + VLSAC G E G + + L +T
Sbjct: 296 GRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLG 355
Query: 170 ---------CGY-----SITPEVEH-----YGCMVDLLSKAGLLEDALELIR---SSKFQ 207
CG+ S+ +EH + M+ L+ G +DA+ L + Q
Sbjct: 356 SALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQ 415
Query: 208 PNAVIWGALLGGC 220
PN + + ALL C
Sbjct: 416 PNEITFVALLTAC 428
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 31/183 (16%)
Query: 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI 70
T+I+ S+ +E LDAF+ + G + V+ +CA L A G+++H + +
Sbjct: 55 TLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVR 114
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL----------------------REKNLF 108
G D+++ +ALVD YAK G +D ++ VF ++ + + LF
Sbjct: 115 GLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLF 174
Query: 109 ---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
WNS+I A G EAL +F RM+ E PN +T ++ S C G +E
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLE 234
Query: 160 EGR 162
G+
Sbjct: 235 TGK 237
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/325 (43%), Positives = 209/325 (64%), Gaps = 2/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RDI+SW ++I+ Y+QN + F M + PD+VT+ ++SA A +GALD G
Sbjct: 321 IPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQG 380
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++ I+ + GSAL+DMY KCGS++R+ ++F ++ EK++ W ++I G A H
Sbjct: 381 RWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFH 440
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ++AL +F M E +PN VTF+SVL+AC+H+GLV+EG + F SM YSI P VEH
Sbjct: 441 GFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEH 499
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL ++G L DA+ +I +P+ IWGA+L C++HRN+E+A A+ EL+ LE
Sbjct: 500 YGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLE 559
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL N+YA RW+ IR M G+ K+ G S + ++ V+ F AS+K
Sbjct: 560 PEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV-KKIAGCSSVAVDGMVHDFTASNKQ 618
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP +I S LS L +++L + VP
Sbjct: 619 HPRWMDICSILSFLTNEMRLEADVP 643
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 44/287 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++S+ TMI +++ L+ F++M++ G+ PD TM +L C LG LG
Sbjct: 189 MSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG 248
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
+ +H + + ++ + +AL+DMY KC L + VF EK+ WN+II G A
Sbjct: 249 KSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKV 308
Query: 119 ------------------------VHGFAHEA-----LAMFDRMIYENVEPNGVTFISVL 149
+ G+A +F RM ENV+P+ VT ++++
Sbjct: 309 GELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLI 368
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQ 207
SA G +++GR + ++E + ++D+ K G +E A +I + +
Sbjct: 369 SAVAEMGALDQGR---WIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAF-VIFNQIPE 424
Query: 208 PNAVIWGALLGGCKLH----RNLEIAHIAVNELMILEPNNSGYCTLL 250
+ W ++ G H + LE+ + E +PN+ + ++L
Sbjct: 425 KDVTTWTTMITGFAFHGFGNKALELFSVMQAE---TKPNDVTFVSVL 468
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 210/328 (64%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++IS+ T+I Y++N EAL+ FNE+++ G+ T A++LS A +G + G +I
Sbjct: 440 KNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI 499
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ G ++ + +AL+ MY++CG+++ + VF + ++N+ W SII G A HGFA
Sbjct: 500 HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F +M+ E V PN VT+I+VLSAC+H GLV EG + F SM + + P +EHY C
Sbjct: 560 TQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VD+L ++G L +A++ I S ++ +A++W LG C++H NLE+ A ++ EP++
Sbjct: 620 IVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD 679
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N+YA +S+W EV+ IR AMKE + K G SW+E+E KV++F D SHP
Sbjct: 680 PAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKE-AGCSWVEVENKVHKFYVGDTSHPK 738
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ EIY L L ++K YVP L+ +L
Sbjct: 739 AAEIYDELQNLSVKIKKLGYVPNLDFVL 766
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ++WT MIT Q EA+D F +M SG PD+ T++ V+SACA++ L LG
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLG 290
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC---GSLDRSLLVFFKLREKNLFCWNSIIEG- 116
+++H ++ G +D +G L++MYAKC GS+ + +F ++ + N+F W ++I G
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSIT 175
+ G+ EAL +F MI +V PN TF S L AC + + G + F ++ G+S
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSV 410
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
V + ++ + +++G ++DA + F+ N + + ++ + N E A NE
Sbjct: 411 NCVAN--SLISMYARSGRIDDARKAF-DILFEKNLISYNTVIDAYAKNLNSEEALELFNE 467
Query: 236 L 236
+
Sbjct: 468 I 468
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 11/252 (4%)
Query: 5 DIISWTTMITCYSQNKQF-REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ SWT MIT Y Q + EALD F M + + P+ T ++ L ACA+L AL +G ++
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+ +++GF + ++L+ MYA+ G +D + F L EKNL +N++I+ A + +
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
EAL +F+ + + + + TF S+LS G + +G + + G + V
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSV--CN 516
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNELMI 238
++ + S+ G +E A ++ + N + W +++ G H + LE+ H + E
Sbjct: 517 ALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEG-- 573
Query: 239 LEPNNSGYCTLL 250
+ PN Y +L
Sbjct: 574 VRPNEVTYIAVL 585
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 5/221 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+RD+ISW+ M++C++ N AL F +M +G P++ A AC+ + +G
Sbjct: 130 SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDS 189
Query: 63 IHLYVMQIGF-DIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I +V++ G+ DV +G L+DM+ K G L + VF K+ E+N W +I L
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EA+ +F MI+ EP+ T V+SAC + L+ G ++ S + +T +
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLG-QQLHSQAIRHGLTLDRCV 308
Query: 181 YGCMVDLLSKAGLLED--ALELIRSSKFQPNAVIWGALLGG 219
C++++ +K + A I N W A++ G
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 7/204 (3%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY 77
N + +A+ M + G PD T + L C + D+G +H + Q +D
Sbjct: 43 NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++L+ +Y+KCG +++ +F + ++L W++++ A + AL F MI
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYGC-MVDLLSKA-GL 193
PN F + AC+ A V G F + GY + +V GC ++D+ K G
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGY-LQSDV-CVGCGLIDMFVKGRGD 220
Query: 194 LEDALELIRSSKFQPNAVIWGALL 217
L A ++ + NAV W ++
Sbjct: 221 LVSAFKVFEKMP-ERNAVTWTLMI 243
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISWT++IT ++++ +AL+ F++M G+ P++VT VLSAC+H+G ++ G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
+ + G + + +VD+ + GSL ++ + K + W + +
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACR 657
Query: 119 VHG 121
VHG
Sbjct: 658 VHG 660
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 208/326 (63%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ++W ++I ++ N EAL + EM + G+ PD TM ++LSAC LGAL LG
Sbjct: 197 MSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H+Y++++G + + +AL+D+Y+KCG+ + VF ++ E+++ W S+I GLAV+
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVN 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EAL +F + + ++P+ +TF+ VL AC+H G+++EG F M Y I P +EH
Sbjct: 317 GLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEH 376
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+GCMVDLL +AG + DA + IR+ PNAVIW LLG C +H +LE+ +A E+ LE
Sbjct: 377 HGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLE 436
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+SG LL N+YA RW +V +R M G+ K+ PG S +E++ +VY+F D+S
Sbjct: 437 QRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGV-KKTPGYSLVELKNRVYEFIMGDRS 495
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S+E Y+ L+K+ + LK+ YVP
Sbjct: 496 HPQSEETYAMLAKITQLLKIEGYVPR 521
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 3/218 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGR 61
A +I +W TMI +++++ A++ F++M S I PD T + A A L + LG
Sbjct: 97 APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V++ GFD ++ ++LV MY+ GSL + VF + ++ WNS+I G A++G
Sbjct: 157 GIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNG 216
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+EAL ++ M E VEP+G T +S+LSAC G + G R + M +
Sbjct: 217 MPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMV-KVGLVQNQHAS 275
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL SK G DA ++ + + + V W +L+ G
Sbjct: 276 NALLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVG 312
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/333 (42%), Positives = 214/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SW T+I Y+ ++EAL F EM SG SP+ VT+ ++L ACAHLGA+D+G
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG 318
Query: 61 REIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + D+ + ++L+DMYAKCG ++ + VF + K+L WN++I G A
Sbjct: 319 RWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 378
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ +F RM +EP+ +TF+ +LSAC+H+G ++ GR F SMT Y ITP++
Sbjct: 379 MHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKL 438
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +GL ++A E+I++ +P+ VIW +LL C+ H NLE+A LM
Sbjct: 439 EHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMK 498
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA W EV K+R + G+ K+ PG S IE++ +V++F D
Sbjct: 499 VEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGM-KKVPGCSSIEIDSEVHEFIVGD 557
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP + EIY L +++ L+ A +VP+ +L
Sbjct: 558 KLHPRNREIYGMLEEMEALLEEAGFVPDTSEVL 590
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ ++EAL+ F EM + + PD+ TM TVLSACA +++LG
Sbjct: 158 IPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELG 217
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y+KCG ++ + +F L K++ WN++I G
Sbjct: 218 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHM 277
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR ++ +T S
Sbjct: 278 NLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPS 337
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ +S + W A++ G +H
Sbjct: 338 LRTS------LIDMYAKCGDIEAAHQVF-NSMLHKSLSSWNAMIFGFAMH 380
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 34/249 (13%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TM+ Y+ + AL + M + G+ P+ T +L +CA A + G++IH +V+
Sbjct: 34 WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--------------------------- 101
++G++ D+Y+ ++L+ MYA+ G L+ + VF +
Sbjct: 94 KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153
Query: 102 ----LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+ K++ WN++I G A G EAL +F M+ NV P+ T ++VLSAC +
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
VE G R+ S + ++ ++DL SK G +E A L + + V W L+
Sbjct: 214 VELG-RQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCK-DVVSWNTLI 271
Query: 218 GGCKLHRNL 226
GG H NL
Sbjct: 272 GG-YTHMNL 279
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 95/208 (45%), Gaps = 17/208 (8%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++E N WN+++ G A+ AL ++ MI + PN TF +L +C +
Sbjct: 22 VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81
Query: 158 VEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
EEG++ + GY P++ + ++ + ++ G LEDA ++ S + + V + AL
Sbjct: 82 FEEGQQIHGHVLKLGYE--PDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-DVVSYTAL 138
Query: 217 LGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ G N+ A +E+ + + + +++ YAE + E ++ M + +
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVS---WNAMISGYAETGSYKEALELFKEMMKTNVR 195
Query: 277 ----------KRCPGSSWIEMERKVYQF 294
C S +E+ R+V+ +
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSW 223
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 216/326 (66%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
R+++ W MI Y+QN+++ +A++ F M+ G+ P+ VT+ +VL ACAHLGALDLG+
Sbjct: 158 RNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKW 217
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
I ++ + + +++G+AL DMYAKCG + + VF K+ E+++ W+ II GLA++G
Sbjct: 218 IDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGH 277
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A EA F M+ +PN V F+ +L+ACTHAGLV++G F +M Y ++P+VEHYG
Sbjct: 278 ADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYG 337
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
C+VDLLS+AG L+ A ++I S +PN +IWGALLGGC+++R+ V ++ L+ +
Sbjct: 338 CVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSD 397
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+SG L N+Y+ + R + K R+ M+E G+ K PG SWIE++ V++F D SHP
Sbjct: 398 HSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLK-TPGCSWIEVDNTVHEFFMGDLSHP 456
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
S++IYS + +L ++KLA Y P+ +
Sbjct: 457 ESNKIYSMIRELMWKMKLAGYKPKTD 482
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 135/263 (51%), Gaps = 21/263 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALD 58
+ + +I + + +QN + A+ FN +S +PD+ T +VL ACA L +
Sbjct: 50 LASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVV 109
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFKLREKNLFCWNSIIEG 116
G++IH V + GF+ ++++ ++L+DMY K G L R L +R++N+ CWN++I G
Sbjct: 110 NGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAG 169
Query: 117 LAVHGFAHEALAMFDRMI--YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLS---MT 169
A + +A+ +F RM+ + V PN VT +SVL AC H G ++ G+ F+S M
Sbjct: 170 YAQNEKYSDAIEVF-RMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMA 228
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
G + + D+ +K G + +A + + + + + W ++ G ++ + + A
Sbjct: 229 LGLFLG------NALADMYAKCGCITEARRVFNKME-ERDVISWSIIICGLAMYGHADEA 281
Query: 230 HIAVNELMIL--EPNNSGYCTLL 250
E++ +PN+ + LL
Sbjct: 282 FGCFYEMLDCGEKPNDVVFMGLL 304
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW+ +I + EA F EM + G P+ V +L+AC H G + G
Sbjct: 257 MEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKG 316
Query: 61 RE-IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
+ + G V +VD+ ++ G LD++ + + K N+ W +++ G
Sbjct: 317 LNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCR 376
Query: 119 VH 120
++
Sbjct: 377 IY 378
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
I L+ A ++ ++ L+F L N+F N+ ++ LA + A+ F+ +
Sbjct: 26 IAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSP 85
Query: 138 VEPNG--VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
PN TF SVL AC V G ++ +M + ++D+ KAG L
Sbjct: 86 NAPNPDEFTFTSVLKACAGLAHVVNG-QKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLL 144
Query: 196 DALELIRSSKFQP-NAVIWGALLGG 219
A L + N V W A++ G
Sbjct: 145 LARHLFDEMFVRDRNVVCWNAMIAG 169
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/325 (43%), Positives = 209/325 (64%), Gaps = 2/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RDI+SW ++I+ Y+QN + F M + PD+VT+ ++SA A +GALD G
Sbjct: 256 IPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQG 315
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++ I+ + GSAL+DMY KCGS++R+ ++F ++ EK++ W ++I G A H
Sbjct: 316 RWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFH 375
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ++AL +F M E +PN VTF+SVL+AC+H+GLV+EG + F SM YSI P VEH
Sbjct: 376 GFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEH 434
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL ++G L DA+ +I +P+ IWGA+L C++HRN+E+A A+ EL+ LE
Sbjct: 435 YGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLE 494
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL N+YA RW+ IR M G+ K+ G S + ++ V+ F AS+K
Sbjct: 495 PEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV-KKIAGCSSVAVDGMVHDFTASNKQ 553
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP +I S LS L +++L + VP
Sbjct: 554 HPRWMDICSILSFLTNEMRLEADVP 578
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 44/287 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++S+ TMI +++ L+ F++M++ G+ PD TM +L C LG LG
Sbjct: 124 MSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG 183
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
+ +H + + ++ + +AL+DMY KC L + VF EK+ WN+II G A
Sbjct: 184 KSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKV 243
Query: 119 ------------------------VHGFAHEA-----LAMFDRMIYENVEPNGVTFISVL 149
+ G+A +F RM ENV+P+ VT ++++
Sbjct: 244 GELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLI 303
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQ 207
SA G +++GR + ++E + ++D+ K G +E A +I + +
Sbjct: 304 SAVAEMGALDQGR---WIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAF-VIFNQIPE 359
Query: 208 PNAVIWGALLGGCKLH----RNLEIAHIAVNELMILEPNNSGYCTLL 250
+ W ++ G H + LE+ + E +PN+ + ++L
Sbjct: 360 KDVTTWTTMITGFAFHGFGNKALELFSVMQAE---TKPNDVTFVSVL 403
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 208/326 (63%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ++W ++I ++ N EAL + EM + G+ PD TM ++LSAC LGAL LG
Sbjct: 197 MSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H+Y++++G + + +AL+D+Y+KCG+ + VF ++ E+++ W S+I GLAV+
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVN 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EAL +F + + ++P+ +TF+ VL AC+H G+++EG F M Y I P +EH
Sbjct: 317 GLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEH 376
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+GCMVDLL +AG + DA + IR+ PNAVIW LLG C +H +LE+ +A E+ LE
Sbjct: 377 HGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLE 436
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+SG LL N+YA RW +V +R M G+ K+ PG S +E++ +VY+F D+S
Sbjct: 437 QRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGV-KKTPGYSLVELKNRVYEFIMGDRS 495
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S+E Y+ L+K+ + LK+ YVP
Sbjct: 496 HPQSEETYAMLAKITQLLKIEGYVPR 521
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 3/218 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGR 61
A +I +W TMI +++++ A++ F++M S I PD T + A A L + LG
Sbjct: 97 APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V++ GFD ++ ++LV MY+ G + + VF + ++ WNS+I G A++G
Sbjct: 157 GIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNG 216
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+EAL ++ M E VEP+G T +S+LSAC G + G R + M +
Sbjct: 217 MPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMV-KVGLVQNQHAS 275
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL SK G DA ++ + + + V W +L+ G
Sbjct: 276 NALLDLYSKCGNFRDAQKVFDEME-ERSVVSWTSLIVG 312
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 210/331 (63%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI+SW TMI YS+N EAL+ F EM+ + P+ +TMA +L ACA L AL+ G
Sbjct: 413 MQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERG 471
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ GF +D ++ +ALVDMY KCG+L + L+F + EK+L W +I G +H
Sbjct: 472 QEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMH 531
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+A F+ M +EP+ V+FIS+L AC+H+GL++EG F M I P+ EH
Sbjct: 532 GYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEH 591
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL++AG L A + I+ +P+A IWGALL GC+++ ++++A + LE
Sbjct: 592 YACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE 651
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+GY LL N+YAE +W EV K+R + G+ K PG SWIE++ KV+ F D S
Sbjct: 652 PENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN-PGCSWIEIKGKVHIFVTGDSS 710
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +++I L K ++K + P++ L
Sbjct: 711 HPLANKIELLLKKTRTRMKEEGHFPKMRYAL 741
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 139/253 (54%), Gaps = 7/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SWT+MI Y++ ++ F+EM+ GISPD T+ T+L ACA G L+ G
Sbjct: 312 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG 371
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ + D+++ +AL+DMYAKCGS+ + VF +++ K++ WN++I G + +
Sbjct: 372 KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKN 431
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+EAL +F M Y N +PN +T +L AC +E G+ + G+S+ V
Sbjct: 432 SLPNEALNLFVEMQY-NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA 490
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ +VD+ K G L A L+ + + V W ++ G +H A A NE+
Sbjct: 491 N--ALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547
Query: 239 -LEPNNSGYCTLL 250
+EP+ + ++L
Sbjct: 548 GIEPDEVSFISIL 560
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +MI+ Y N + LD F +M GI+ D TM +V++ C++ G L LGR +
Sbjct: 214 RDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRAL 273
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y ++ F ++ + + L+DMY+K G+L+ ++ VF + E+++ W S+I G A G +
Sbjct: 274 HGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLS 333
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHY 181
++ +F M E + P+ T ++L AC GL+E G+ ++ + ++
Sbjct: 334 DMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN---KMQSDLFVS 390
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G + DA + + + + V W ++GG
Sbjct: 391 NALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGG 427
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 71/302 (23%)
Query: 31 EMKNSGISPDQ--VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
E+ N PD T +VL CA L ++ GR IH + ++D +GS LV MY
Sbjct: 89 ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148
Query: 89 CGSL-------------------------------DRSLLVFFKLRE------------- 104
CG L SL +F ++RE
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208
Query: 105 -----KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
+++ WNS+I G +G + + L +F++M+ + + T +SV++ C++ G++
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLL 268
Query: 160 EGRRRFLSMTCGYSIT----PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
GR GY+I E+ C++D+ SK+G L A+++ + + + V W +
Sbjct: 269 LGRALH-----GYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTS 322
Query: 216 LLGG----------CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
++ G +L +E I+ + I ++ CT LL +V + + K
Sbjct: 323 MIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENK 382
Query: 266 IR 267
++
Sbjct: 383 MQ 384
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 204/330 (61%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++SW MI Y+ ++EAL F M S I P+ VT ++L ACA+LGALDLG+ +
Sbjct: 325 KNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWV 384
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H YV + V + ++L+DMYAKCG L + +F + K+L WN++I G A+HG
Sbjct: 385 HAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHG 444
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
AL +F RM E P+ +TF+ VL+AC HAGL+ GRR F SM Y ++P++ HY
Sbjct: 445 HTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHY 504
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DL +AGL ++A L+++ + +P+ IW +LLG C++HR +E+A L LEP
Sbjct: 505 GCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEP 564
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N LL N+YA RW +V KIR + + + K+ PG S IE++ V++F DK H
Sbjct: 565 ENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM-KKVPGCSSIEVDSVVHEFLVGDKVH 623
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P S+EIY L ++D +L+ A +VP+ +L
Sbjct: 624 PQSNEIYKMLDEIDMRLEKAGFVPDTSEVL 653
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 3/231 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDL 59
+P RD++SW MI+ Y+Q+ + EA+ F EM+ + ++P+ TM +VLSACA G+ L L
Sbjct: 220 IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQL 279
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G + ++ G ++ + + L+DMY KCG L+ + +F K+++KN+ WN +I G
Sbjct: 280 GNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTH 339
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPEV 178
EAL +F RM+ N++PN VTF+S+L AC + G ++ G+ + S+ V
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ ++D+ +K G L A + + A W A++ G +H + + A
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-WNAMISGFAMHGHTDTA 449
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 32/244 (13%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ W MI S ++ AL+ + M +SG P++ T ++ +C + G+++H +
Sbjct: 94 VIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAH 153
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE-------------------- 104
V+++G + + ++ ++L++MYA+ G L + LVF K +R+
Sbjct: 154 VLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEA 213
Query: 105 ---------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+++ WN++I G A G EA+A F+ M V PN T +SVLSAC +
Sbjct: 214 RELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQS 273
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
G + S + + ++D+ K G LE+A L + N V W
Sbjct: 274 GSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ-DKNVVSWNV 332
Query: 216 LLGG 219
++GG
Sbjct: 333 MIGG 336
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLR 103
T+LS C L L ++IH +++ G + S L++ A G L +L +F +R
Sbjct: 33 TLLSNCKTLQTL---KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR 89
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
N WN +I GL+ AL + MI EPN TF S+ +CT EG++
Sbjct: 90 NPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQ 149
Query: 164 RFLSMTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + +EH + ++++ ++ G L +A + S + +AV + AL+ G
Sbjct: 150 -----VHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR-DAVSFTALITG 203
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + + +W MI+ ++ + AL F+ M + G PD +T VL+AC H G L LG
Sbjct: 425 MNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLG 484
Query: 61 REIHLYVMQ---IGFDIDVYIGSALVDMYAKCGSLDRS 95
R ++Q + + Y ++D++ + G D +
Sbjct: 485 RRYFSSMIQDYKVSPKLPHY--GCMIDLFGRAGLFDEA 520
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 202/318 (63%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++ WT MI+ Y++ ++A++ +N+M+ +G+ D T+ ++LSACA G L LG
Sbjct: 271 MPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLG 330
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + F + +AL+DMYAKCGSL+ +L +F + K++ WN+II+GLA+H
Sbjct: 331 KRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMH 390
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F RM E P+ VTF+ VL ACTHAG V+EG F +M Y + PEVEH
Sbjct: 391 GHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEH 450
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G L++A L+ S +PNA+IWG LLG C++H +A + L+ E
Sbjct: 451 YGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSE 510
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++SG ++L N+YA W IR+ MK I+K GSS IE++ +V++F D+S
Sbjct: 511 LSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSS-IEVDDEVHEFTVFDRS 569
Query: 301 HPASDEIYSSLSKLDEQL 318
HP SD IY ++ L + +
Sbjct: 570 HPKSDRIYKTIDGLGQHI 587
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 12/230 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +MI + + EA F+EM D V+ T+L G ++
Sbjct: 178 MAERDTVSWNSMIGGLVKVGELGEARRLFDEMPER----DTVSWNTILDGYVKAGEMNAA 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ + +V S +V Y+K G +D + ++F K+ KNL W +I G A
Sbjct: 234 FELFEKMPAR----NVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEK 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G A +A+ ++++M ++ + T IS+LSAC +GL+ G+R S+ + + V
Sbjct: 290 GLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS 349
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ ++D+ +K G LE+AL + + + V W A++ G +H + E A
Sbjct: 350 N--ALIDMYAKCGSLENALSIFH-GMVRKDVVSWNAIIQGLAMHGHGEKA 396
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 12/217 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ + T+I + +N + A F EM++SG+ D T +L AC+ + + IH
Sbjct: 79 DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCG--SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
V ++GF +D+++ ++L+D Y KCG + + VF + E++ WNS+I GL G
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGE 198
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EA +FD M E + V++ ++L AG + F M V +
Sbjct: 199 LGEARRLFDEM----PERDTVSWNTILDGYVKAGEMNAAFELFEKMP-----ARNVVSWS 249
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
MV SKAG ++ A L + N V W ++ G
Sbjct: 250 TMVLGYSKAGDMDMARILFDKMPVK-NLVPWTIMISG 285
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
+L+ ++IH V++ + ++G L+ ++ C + ++ VF ++++ ++ +N++I
Sbjct: 29 SLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
+ A ++F M V + T+ +L AC+ V R + M I
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWV-----RVVEM-----IH 138
Query: 176 PEVEHYGCMVDLLSKAGLLED----ALELIRSSK------FQPNAVIWGALLGG 219
+VE G +D+ L++ L+ + +++ + + V W +++GG
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGG 192
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 212/327 (64%), Gaps = 5/327 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN---SGISPDQVTMATVLSACAHLGAL 57
MP +++ISW+ MI Y +++ AL F ++ S + P++ TM++VLSACA LGAL
Sbjct: 152 MPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGAL 211
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEG 116
G+ +H Y+ + G IDV +G++L+DMYAKCGS++R+ +F L EK++ W+++I
Sbjct: 212 QHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITA 271
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
++HG + E L +F RM+ + V PN VTF++VL AC H GLV EG F M Y ++P
Sbjct: 272 FSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSP 331
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++HYGCMVDL S+AG +EDA +++S +P+ +IWGALL G ++H ++E IA+ +L
Sbjct: 332 MIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKL 391
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ L+P NS LL N+YA++ RW EV +R M+ GI K+ PG S +E++ + +F A
Sbjct: 392 LELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGI-KKLPGCSLVEVDGVIREFFA 450
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASY 323
D SHP +Y L ++ ++L+ Y
Sbjct: 451 GDNSHPELLNLYVMLDEIMKRLEKHGY 477
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 42/242 (17%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY 77
QN F AL + M+ + PD T +L + + GR++H ++ +G D +
Sbjct: 40 QNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTPHRGRQLHAQILLLGLANDPF 96
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+ ++L++MY+ CG+ + F ++ + +L WN+II A G H A +FD+M +N
Sbjct: 97 VQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKN 156
Query: 138 V----------------------------------EPNGVTFISVLSACTHAGLVEEGR- 162
V PN T SVLSAC G ++ G+
Sbjct: 157 VISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKW 216
Query: 163 -RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
++ T G I +V ++D+ +K G +E A + + + + + W A++
Sbjct: 217 VHAYIDKT-GMKI--DVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFS 273
Query: 222 LH 223
+H
Sbjct: 274 MH 275
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 205/328 (62%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW +++ Y QN ++ EAL F +M ++ + P V ++V+ ACAHL L LG+++
Sbjct: 270 RDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQL 329
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ GF +++I SALVDMY+KCG++ + +F ++ + W +II G A+HG
Sbjct: 330 HGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHG 389
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
HEA+++F+ M + V+PN V F++VL+AC+H GLV+E F SMT Y + E+EHY
Sbjct: 390 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 449
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ DLL +AG LE+A + I + +P +W LL C +H+NLE+A ++ ++ N
Sbjct: 450 VADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSEN 509
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ NMYA RW E+ K+R+ +++ G+ K+ P SWIEM+ K + F + D+SHP+
Sbjct: 510 MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKK-PACSWIEMKNKTHGFVSGDRSHPS 568
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
D I L + EQ++ YV + +L
Sbjct: 569 MDRINEFLKAVMEQMEKEGYVADTSGVL 596
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++S+ T+I Y+Q+ + +AL EM S + PD T+++VL + + G
Sbjct: 166 MPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKG 225
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH YV++ G D DVYIGS+LVDMYAK ++ S VF L ++ WNS++ G +
Sbjct: 226 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQN 285
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EAL +F +M+ V P V F SV+ AC H + G++ + G +
Sbjct: 286 GRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGRNIFI 344
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ SK G ++ A ++ + V W A++ G LH
Sbjct: 345 ASALVDMYSKCGNIQAARKIFDRMNLH-DEVSWTAIIMGHALH 386
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 116/218 (53%), Gaps = 10/218 (4%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+++W ++I C++ F AL +F EM+ SG PD +VL +C + L G +H
Sbjct: 70 VLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+++++G D D+Y G+AL++MY+K +D VF + K++ +N++I G A G +
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYED 189
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHY 181
AL M M +++P+ T SVL + V +G+ GY I +V
Sbjct: 190 ALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKE-----IHGYVIRKGIDSDVYIG 244
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K+ +ED+ E + S ++ +++ W +L+ G
Sbjct: 245 SSLVDMYAKSARIEDS-ERVFSHLYRRDSISWNSLVAG 281
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SWT +I ++ + EA+ F EMK G+ P+QV VL+AC+H+G +D
Sbjct: 368 MNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 427
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
+ ++ G + ++ +A+ D+ + G L+ + K+R E W++++ +
Sbjct: 428 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCS 487
Query: 119 VH 120
VH
Sbjct: 488 VH 489
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 209/332 (62%), Gaps = 3/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D+ISW T+IT Y+QN EA++ + M+ I P+Q T ++L A AH+GAL
Sbjct: 246 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 305
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH V++ +DV++ + L+D+Y KCG L ++ +F+++ +++ WN+II +
Sbjct: 306 GMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 365
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A + L +F M+ E V+P+ VTF+S+LSAC+H+G VEEG+ F M Y I P ++
Sbjct: 366 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLK 424
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE A + I+ QP+A IWGALLG C++H N+E+ A + L +
Sbjct: 425 HYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 484
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N GY LL N+YA V +W V K+R +E G+ K+ PG S IE+ RKV F ++
Sbjct: 485 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL-KKTPGWSTIEVNRKVDVFYTGNQ 543
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP EIY L L ++K Y+P+ +L
Sbjct: 544 SHPKCKEIYEELRVLTAKMKSLGYIPDYSFVL 575
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 31/244 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
+P +D+ +W +MI+ Y N F EA+ F ++ S I PD T VL AC G L
Sbjct: 77 IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 133
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH + ++GF +V++ ++L+ MY++ G + +F + +++ WN++I GL
Sbjct: 134 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 193
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA----GLVEEGRRRFLSMTCGYSIT 175
+G A +AL + D M E ++ N VT +S+L GL++ + F I
Sbjct: 194 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVF-------EII 246
Query: 176 P--EVEHYGCMVDLLSKAGLLEDALELIR----SSKFQPNAVIW----------GALLGG 219
P +V + ++ ++ GL +A+E+ + + PN W GAL G
Sbjct: 247 PVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 306
Query: 220 CKLH 223
K+H
Sbjct: 307 MKIH 310
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 15/190 (7%)
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR-MI 134
++I + LV++YA G + S F ++ +K+++ WNS+I +G HEA+ F + ++
Sbjct: 51 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL 110
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
+ P+ TF VL AC G + +GR+ + G+ V ++ + S+ G
Sbjct: 111 VSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVA--ASLIHMYSRFGF 165
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL--- 250
A L F+ W A++ G + N A ++E M LE + T++
Sbjct: 166 TGIARSLFDDMPFRDMGS-WNAMISGLIQNGNAAQALDVLDE-MRLEGIKMNFVTVVSIL 223
Query: 251 ---LNMYAEV 257
++MYA++
Sbjct: 224 PVFVDMYAKL 233
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW M+ YSQ E L F EM G ++ A VLS CA + AL+ G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++ G+ + ++G+AL+ MY KCG+++ + F ++ E+++ WN++I G A H
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +FD M + +P+ +T + VL+AC+H+GLVE+G F SM + +T + EH
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L +A +L++ F+P++ +WGALLG ++HRN E+ A ++ LE
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W + K+RV M+E G+ K+ PG SWIE++ KV+ F+A D
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV-KKVPGFSWIEVQNKVHTFSAGDCV 641
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY+ L LD ++K A YV + +L
Sbjct: 642 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 672
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ISW +++ Y Q + EA + F+ M D V+ ++S A G + R +
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRL- 246
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD DV+ +A+V YA+ G L+ + VF + E+N WN+++
Sbjct: 247 -------FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA +F+ M NV ++ ++L+ AG++EE + F +M +++
Sbjct: 300 RMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS----- 350
Query: 181 YGCMVDLLSKAGLLEDALELI 201
+ M+ S+ G E+ L+L
Sbjct: 351 WAAMLAAYSQGGCSEETLQLF 371
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT +++ Y+QN EA F+ M + V+ +++A +D +
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAK 306
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ M ++ + + ++ YA+ G L+ + VF + +K+ W +++ + G
Sbjct: 307 E--LFNMMPCRNVASW--NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 362
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEH 180
+ E L +F M N F VLS C +E G + + GY +
Sbjct: 363 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 416
Query: 181 YGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +EDA + + + V W ++ G H
Sbjct: 417 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARH 462
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 116/267 (43%), Gaps = 23/267 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S+ T++ + + +A F+EM D VT ++S+ A+ G + L
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLA 150
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + + + D + ++ Y + G ++ + +F E ++ WN+++ G
Sbjct: 151 R----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 206
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +FDRM +V V++ ++S G + E RR F + + +V
Sbjct: 207 GKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLFDA-----APVRDVFT 257
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ +V ++ G+LE+A + + + NAV W A++ R ++ A EL +
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMDEA----KELFNMM 312
Query: 241 P-NNSGYCTLLLNMYAEVSRWAEVTKI 266
P N +L YA+ E +
Sbjct: 313 PCRNVASWNTMLTGYAQAGMLEEAKAV 339
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A++ Y+ G L + +F + + + +N+++ LAV +A +FD M
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR--- 129
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE--HYGCMVDLLSKAGLLEDA 197
+ VT+ ++S+ + GLV R F + PE + + M+ + G +E+A
Sbjct: 130 -DSVTYNVMISSHANHGLVSLARHYF-------DLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 198 LELIRSSKFQPNAVIWGALLGG 219
L +S+ + + + W AL+ G
Sbjct: 182 RGLF-NSRTEWDVISWNALMSG 202
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 215/326 (65%), Gaps = 3/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP R++ISWT +I+ Y+QN ++ +AL+ F ++N G P++V++A+VL AC+ LGALD+
Sbjct: 174 MPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDI 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
G+ I Y GF + Y+ +A+++++A+CG+++ + VF ++ K NL WN++I GLA
Sbjct: 234 GKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLA 293
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG +AL ++D+M+ + P+ VTF+ +L ACTH G+V EGR+ F SM + + P++
Sbjct: 294 VHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKL 353
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDLL +AG L++A LI++ P++VIWG LLG C H N+E+ +A L
Sbjct: 354 EHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFK 413
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G +L N+YA W+ V ++R MK I KR G S+IE+ +++F D
Sbjct: 414 LEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRA-GYSYIEVGDGIHEFIVED 472
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYV 324
+SH S EIY+ L K+ + +KL +V
Sbjct: 473 RSHLKSGEIYALLHKIYDIIKLHKHV 498
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 44/313 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + I +S + +M + G SP+Q + + ACA L + G
Sbjct: 42 IPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG 101
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + GF D++ +AL+DMYAK G L + +F ++ +++ WNS+I G A
Sbjct: 102 QMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARS 161
Query: 121 GFAHEALAMFDRMIYENV--------------------------------EPNGVTFISV 148
G AL +F++M NV +PN V+ SV
Sbjct: 162 GHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASV 221
Query: 149 LSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L AC+ G ++ G+R + G+ V + +++L ++ G +E+A ++ +
Sbjct: 222 LPACSQLGALDIGKRIEAYARNNGFFKNAYVSN--AVLELHARCGNIEEAQQVFDEIGSK 279
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLL-----NMYAEVSRW 260
N W ++ G +H A ++++I + P++ + LLL M AE +
Sbjct: 280 RNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQL 339
Query: 261 AEV--TKIRVAMK 271
E +K +VA K
Sbjct: 340 FESMESKFQVAPK 352
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 94/211 (44%), Gaps = 9/211 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y ++ G D + L++ + L + +F ++ + +++ +N I+ +
Sbjct: 5 KQIHAYSLRNGLDHTKF----LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H ++ +M + PN +F + AC V G + S C ++
Sbjct: 61 GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QMLHSHFCKSGFASDMFA 119
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ +K G+L A +L + + W +L+ G ++E A N++ +
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGHMEAALELFNKMPV-- 176
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
N T L++ YA+ ++A+ ++ + ++
Sbjct: 177 -RNVISWTALISGYAQNGKYAKALEMFIGLE 206
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 208/328 (63%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++W++M+ Y Q+K + EAL + + + +Q T+++V+ AC++L AL G
Sbjct: 225 MQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 284
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + GF +V++ S+ VDMYAKCGSL S ++F +++EKN+ WN+II G A H
Sbjct: 285 KQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKH 344
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E + +F++M + + PN VTF S+LS C H GLVEEGRR F M Y ++P V H
Sbjct: 345 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 404
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L +AGLL +A ELI+S F+P A IWG+LL C++ +NLE+A +A +L LE
Sbjct: 405 YSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELE 464
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W E+ K R +++ + K+ G SWI+++ KV+ F + S
Sbjct: 465 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDV-KKVRGQSWIDIKDKVHIFRVGESS 523
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP EI + L L +L+ Y P +E
Sbjct: 524 HPRIREICTMLDNLVIELRKFGYKPSVE 551
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 138/254 (54%), Gaps = 8/254 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-AHLGALDL 59
M R ++SW TMI Y++N+ EALD F EM+N G + T+++VLSAC A+ AL+
Sbjct: 124 MLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALEC 183
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H M+ D+++Y+G+AL+D+YAKCG ++ ++ VF +++K+ W+S++ G
Sbjct: 184 -KKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQ 242
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEV 178
EAL ++ R ++E N T SV+ AC++ A L+E + + G+ V
Sbjct: 243 SKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFV 302
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
VD+ +K G L ++ +I S + N +W ++ G H + I ++
Sbjct: 303 ASSA--VDMYAKCGSLRESY-IIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQ 359
Query: 239 --LEPNNSGYCTLL 250
+ PN + +LL
Sbjct: 360 DGMHPNEVTFSSLL 373
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 21/247 (8%)
Query: 1 MPARDIISWTT--MITC-----YSQNKQFREALDAFNEMKNSGISPDQ------VTMAT- 46
+P+++I+ +T +I C S + F + +SP + V A+
Sbjct: 6 LPSKNILGFTANFLIRCKILPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASD 65
Query: 47 ---VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
+L CA GA+ + H M++ DV + + L++ Y+KCG ++ + VF +
Sbjct: 66 FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-THAGLVEEGR 162
E++L WN++I + EAL +F M E + + T SVLSAC + +E +
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
LSM + V ++DL +K G++ DA+++ S + ++V W +++ G
Sbjct: 186 LHCLSMKTSLDLNLYVG--TALLDLYAKCGMINDAVQVFESMQ-DKSSVTWSSMVAGYVQ 242
Query: 223 HRNLEIA 229
+N E A
Sbjct: 243 SKNYEEA 249
>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 213/333 (63%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALD 58
M RD I+W +I+CY +N++ R+ L F+ M + G PD VT +L ACA+LGAL+
Sbjct: 85 MRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALE 144
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++H ++++ G+D + ++L+ MY++ G+LD++ VF + KN+ W++II GLA
Sbjct: 145 FGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLA 204
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++G+ EA+ F+ M+ V P+ +TF VLSAC++ GLV++G F M+ + I P +
Sbjct: 205 MNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPNI 264
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
HYGCMVDLL +AG L A +LI S + +P++ IW LLG C++HRN+ + V L+
Sbjct: 265 HHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHLIE 324
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+ +G LL N+Y+ V W +VT++R MKE GI+ P SS IE++ KV++F D
Sbjct: 325 LKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQT-TPASSSIELKGKVHEFVVDD 383
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP DEIY L ++ +QLK+A YV E+ + L
Sbjct: 384 VSHPQKDEIYEMLDEISKQLKIAGYVAEITSEL 416
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 6/199 (3%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
E + EM+ G+ D V+++ V+ + +L G ++H ++ G D + + L+
Sbjct: 7 EGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLM 66
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV--EPN 141
D+Y+ C + VF ++R+++ WN +I + + L +FD M+ + EP+
Sbjct: 67 DLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPD 126
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
VT + +L AC + G +E G + + GY + ++ + S+ G L+ A +
Sbjct: 127 DVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNL--CNSLIAMYSQFGNLDKAFGV 184
Query: 201 IRSSKFQPNAVIWGALLGG 219
+ N V W A++ G
Sbjct: 185 FKGMH-NKNVVTWSAIISG 202
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW M+ YSQ E L F EM G ++ A VLS CA + AL+ G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++ G+ + ++G+AL+ MY KCG+++ + F ++ E+++ WN++I G A H
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +FD M + +P+ +T + VL+AC+H+GLVE+G F SM + +T + EH
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L +A +L++ F+P++ +WGALLG ++HRN E+ A ++ LE
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W + K+RV M+E G+ K+ PG SWIE++ KV+ F+A D
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV-KKVPGFSWIEVQNKVHTFSAGDCV 641
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY+ L LD ++K A YV + +L
Sbjct: 642 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 672
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ISW +++ Y Q + EA + F+ M D V+ ++S A G + R +
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRL- 246
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD DV+ +A+V YA+ G L+ + VF + E+N WN+++
Sbjct: 247 -------FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA +F+ M NV ++ ++L+ AG++EE + F +M +++
Sbjct: 300 RMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS----- 350
Query: 181 YGCMVDLLSKAGLLEDALELI 201
+ M+ S+ G E+ L+L
Sbjct: 351 WAAMLAAYSQGGCSEETLQLF 371
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT +++ Y+QN EA F+ M + V+ +++A +D +
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAK 306
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ M ++ + + ++ YA+ G L+ + VF + +K+ W +++ + G
Sbjct: 307 E--LFNMMPCRNVASW--NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 362
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEH 180
+ E L +F M N F VLS C +E G + + GY +
Sbjct: 363 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 416
Query: 181 YGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +EDA + + + V W ++ G H
Sbjct: 417 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARH 462
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 118/273 (43%), Gaps = 23/273 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S+ T++ + + +A F+EM D VT ++S+ A+ G + L
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLA 150
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + + + D + ++ Y + G ++ + +F E ++ WN+++ G
Sbjct: 151 R----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 206
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +FDRM +V V++ ++S G + E RR F + + +V
Sbjct: 207 GKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLFDA-----APVRDVFT 257
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ +V ++ G+LE+A + + + NAV W A++ R ++ A EL +
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMDEA----KELFNMM 312
Query: 241 P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
P N +L YA+ E + M +
Sbjct: 313 PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A++ Y+ G L + +F + + + +N+++ LAV +A +FD M
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR--- 129
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE--HYGCMVDLLSKAGLLEDA 197
+ VT+ ++S+ + GLV R F + PE + + M+ + G +E+A
Sbjct: 130 -DSVTYNVMISSHANHGLVSLARHYF-------DLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 198 LELIRSSKFQPNAVIWGALLGG 219
L +S+ + + + W AL+ G
Sbjct: 182 RGLF-NSRTEWDVISWNALMSG 202
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 208/320 (65%), Gaps = 1/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + ++ W +I+ Q KQ +EAL F+EM+ I PD+VTM LSAC+ LGALD+G
Sbjct: 351 IPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVG 410
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + IDV +G+ALVDMYAKCG++ R+L VF ++ ++N W ++I GLA+H
Sbjct: 411 IWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALH 470
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL+ F +MI+ + P+ +TF+ VLSAC H GLVEEGR+ F M+ ++++P+++H
Sbjct: 471 GNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKH 530
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG LE+A EL+++ +A + GAL C+++ N++I +L+ ++
Sbjct: 531 YSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEID 590
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL +MY+E W E R M + G+EK PG S +E+ V++F D S
Sbjct: 591 PQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKT-PGCSLVEINGIVHEFVVRDVS 649
Query: 301 HPASDEIYSSLSKLDEQLKL 320
HP S+ IY L L +QL +
Sbjct: 650 HPQSEWIYECLVTLTKQLDV 669
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 47/264 (17%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+++W +MIT + EA+ + EM+ + P+++TM ++S+C+ + L+LG+E
Sbjct: 222 RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEF 281
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSL------------------------------- 92
H Y+ + G + + + +AL+DMY KCG L
Sbjct: 282 HCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFL 341
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
D + + +K+ EK++ WN+II G EALA+F M +EP+ VT ++ LSAC
Sbjct: 342 DVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSAC 401
Query: 153 THAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+ G ++ G R LS+ +V +VD+ +K G + AL++
Sbjct: 402 SQLGALDVGIWIHHYIERHKLSI--------DVALGTALVDMYAKCGNIARALQVFEEIP 453
Query: 206 FQPNAVIWGALLGGCKLHRNLEIA 229
Q N + W A++ G LH N + A
Sbjct: 454 -QRNCLTWTAVICGLALHGNAQDA 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 34/271 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREI 63
++ SW I Y ++ + M G + PD T +L C + LG +
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V++ GF+ D+++ +A + M CG L + VF K R ++L WNS+I G G A
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFLSMT--- 169
EA+ ++ M E V PN +T I ++S+C+ H + E G + +T
Sbjct: 241 IEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNAL 300
Query: 170 ------CGYSITPEV----------EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
CG +T V + MV ++ G L+ A E++ + + V W
Sbjct: 301 MDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIP-EKSVVPW 359
Query: 214 GALLGGCKLHRNLEIAHIAVNELMI--LEPN 242
A++ GC + + A +E+ I +EP+
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRTIEPD 390
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 29/251 (11%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFK 101
+ ++L C L L ++I ++ G + + S LV A S LD + ++
Sbjct: 60 LLSILERCKSLVQL---KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYR 116
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSAC--THAGLV 158
++E N+F WN+ I G G ++ RM+ ++P+ T+ +L C ++ +
Sbjct: 117 IKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCL 176
Query: 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
G L + ++ + + +L G L A ++ S+ + + V W +++
Sbjct: 177 GLG---VLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVR-DLVTWNSMIT 232
Query: 219 GCKLHRNLEIAHIAVNELMILE---PNNSGYCTLLLNMYAEVSRWAEVTKIRVA------ 269
GC + R L I I + + M E PN + M +S ++V + +
Sbjct: 233 GC-VKRGLAIEAIKIYKEMEAEKVRPNE-------ITMIGMISSCSQVQDLNLGKEFHCY 284
Query: 270 MKELGIEKRCP 280
+KE G+E P
Sbjct: 285 IKEHGLEFTIP 295
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 212/327 (64%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SW +I+ Y+Q++ EAL AF +M+ I P+ VT+A +LS CAHL + L
Sbjct: 479 LSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLC 538
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ G V + ++L+ YAKCG ++ SL F K+ E+N WNSII G+ +H
Sbjct: 539 KEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMH 598
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E + +FD+M+ ++P+ VTF ++LSAC+HAG V+EG + F SM +++ P++E
Sbjct: 599 SRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQ 658
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L A +LI + P+ IWG+LLG CK H + +A I N + L
Sbjct: 659 YTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLV 718
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ GY LL N+Y + + E +K+R +K++G++K+ PG SWIE++ + F A D+S
Sbjct: 719 PSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKK-PGCSWIEVDNNFHIFIAGDRS 777
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
H SDEIY+++ L ++K A Y+P++
Sbjct: 778 HSQSDEIYAAVESLTTEIKRAGYIPQI 804
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP D++SW TMI+ + ++ + +L F M GI P++V + + +C+ L +L
Sbjct: 170 MPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTH 229
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-----NLFCWNSII 114
GREIH V++ G D++ Y+ S+L++MY KCGS+ + +F + +K N WN +I
Sbjct: 230 GREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMI 289
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G +G +AL +F +M+ ++P+ T +S+ S C+ + + G ++ + + +
Sbjct: 290 SGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFG-KQIHGLIFKFGL 348
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ ++D+ K G + L++ R S+ N ++W A++ C
Sbjct: 349 KNNIRVETALLDMYLKCGDMGTGLKIFRRSQ-NHNLIMWSAVISNC 393
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 83/150 (55%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++I W+ +I+ +Q+ +AL+ F E K D + VL AC+ L G +IH
Sbjct: 382 NLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIH 441
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++GF DV++GSALVD+YAKC + S VF +L +K+L WN++I G A A
Sbjct: 442 GLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECAD 501
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTH 154
EAL F M E + PN VT +LS C H
Sbjct: 502 EALKAFRDMQLEEIRPNTVTIACILSVCAH 531
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 16/247 (6%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ + W MI+ Y N F +AL F +M GI PD TM ++ S C+ + G++I
Sbjct: 280 RNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQI 339
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + G ++ + +AL+DMY KCG + L +F + + NL W+++I A G
Sbjct: 340 HGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCP 399
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
+AL +F E+ + ++VL AC+ L EG + L+ G+ +V
Sbjct: 400 TKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGF--VSDVFVGS 457
Query: 183 CMVDLLSKAGLLEDALEL-IRSSKFQPNAVIWGALLGG----------CKLHRNLEIAHI 231
+VDL +K + + ++ +R S Q + V W AL+ G K R++++ I
Sbjct: 458 ALVDLYAKCRDMGYSKKVFLRLS--QKDLVSWNALISGYAQDECADEALKAFRDMQLEEI 515
Query: 232 AVNELMI 238
N + I
Sbjct: 516 RPNTVTI 522
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 16 YSQNKQFREALDAFNEMKNSGISPDQVT-MATVLSACAHLGALDLGREIHLYVMQIGFDI 74
Y+++ F +A+ + +M + G+ ++ ++ A L + GR+IH +V+++G
Sbjct: 83 YTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLD 142
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV + ++L+ MY KCG ++ ++ +F K+ E +L WN++I G +L F M+
Sbjct: 143 DVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMV 202
Query: 135 YE-NVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHY--GCMVDLLSK 190
+E + PN V +S + +C+ + GR + + G +VE Y ++++ K
Sbjct: 203 WEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGL----DVEEYLVSSLIEMYMK 258
Query: 191 AGLLEDALELIRS----SKFQPNAVIWGALLGG 219
G +++A + S + NAVIW ++ G
Sbjct: 259 CGSIKNAENIFNSILDKDSVRRNAVIWNVMISG 291
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW M+ YSQ E L F EM G ++ A VLS CA + AL+ G
Sbjct: 218 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++ G+ + ++G+AL+ MY KCG+++ + F ++ E+++ WN++I G A H
Sbjct: 278 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +FD M + +P+ +T + VL+AC+H+GLVE+G F SM + +T + EH
Sbjct: 338 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 397
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L +A +L++ F+P++ +WGALLG ++HRN E+ A ++ LE
Sbjct: 398 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 457
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W + K+RV M+E G+ K+ PG SWIE++ KV+ F+A D
Sbjct: 458 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV-KKVPGFSWIEVQNKVHTFSAGDCV 516
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY+ L LD ++K A YV + +L
Sbjct: 517 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 547
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 23/224 (10%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D +SW M+ Y +N + EA F NS D ++ ++S G + R
Sbjct: 33 PEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALMSGYVQWGKMSEAR 88
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ G D+ + + +V YA+ G + + +F +++F W +++ G A +G
Sbjct: 89 E--LFDRMPGRDVVSW--NIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 144
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EA +FD M E N V++ ++++A +++E + F M C V +
Sbjct: 145 MLEEARRVFDAM----PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPC-----RNVASW 195
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL-----GGC 220
M+ ++AG+LE+A + + + Q +AV W A+L GGC
Sbjct: 196 NTMLTGYAQAGMLEEA-KAVFDTMPQKDAVSWAAMLAAYSQGGC 238
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ISW +++ Y Q + EA + F+ M D V+ ++S A G + R +
Sbjct: 67 DVISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRL- 121
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD DV+ +A+V YA+ G L+ + VF + E+N WN+++
Sbjct: 122 -------FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 174
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA +F+ M NV ++ ++L+ AG++EE + F +M +++
Sbjct: 175 RMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS----- 225
Query: 181 YGCMVDLLSKAGLLEDALELI 201
+ M+ S+ G E+ L+L
Sbjct: 226 WAAMLAAYSQGGCSEETLQLF 246
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW M++ Y++ EA F ++ D T V+S A G L+
Sbjct: 94 MPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEA 149
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R + FD + +A+V Y + +D + +F + +N+ WN+++ G
Sbjct: 150 RRV--------FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG 201
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSIT 175
A G EA A+FD M + + V++ ++L+A + G EE + F+ M CG +
Sbjct: 202 YAQAGMLEEAKAVFDTM----PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 257
Query: 176 PEVEHYGCMVDLLSKAGLLEDALEL 200
+ C++ + LE ++L
Sbjct: 258 RSA--FACVLSTCADIAALECGMQL 280
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT +++ Y+QN EA F+ M + V+ +++A +D +
Sbjct: 126 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAK 181
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ M ++ + + ++ YA+ G L+ + VF + +K+ W +++ + G
Sbjct: 182 E--LFNMMPCRNVASW--NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 237
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEH 180
+ E L +F M N F VLS C +E G + + GY +
Sbjct: 238 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 291
Query: 181 YGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +EDA + + + V W ++ G H
Sbjct: 292 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARH 337
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 19/234 (8%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D VT ++S+ A+ G + L R + + + D + ++ Y + G ++ + +F
Sbjct: 5 DSVTYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
E ++ WN+++ G G EA +FDRM +V V++ ++S G +
Sbjct: 61 NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMV 116
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
E RR F + + +V + +V ++ G+LE+A + + + NAV W A++
Sbjct: 117 EARRLFDA-----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA 170
Query: 220 CKLHRNLEIAHIAVNELMILEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
R ++ A EL + P N +L YA+ E + M +
Sbjct: 171 YIQRRMMDEA----KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 220
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/320 (44%), Positives = 208/320 (65%), Gaps = 4/320 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++ WT MI Y Q F +A+ F EM+ I PD+ T+ T+L+ CA LGAL+ G+
Sbjct: 391 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGK 450
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH Y+ + +DV +G+AL++MY+KCG +D+SL +F++L +K+ W SII GLA++G
Sbjct: 451 WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNG 510
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M +P+ +TFI VLSAC+H GLVEEGRR F SM + I P+VEHY
Sbjct: 511 KTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHY 570
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVI---WGALLGGCKLHRNLEIAHIAVNELMI 238
GC++DLL +AGLL++A ELI+ + ++ +GALL C++H N+++ +L
Sbjct: 571 GCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLEN 630
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E +S TLL N+YA V RW + K+R MKELG+ K+ PG S IE++ V++F D
Sbjct: 631 IESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGV-KKMPGCSLIEVDGIVHEFLVGD 689
Query: 299 KSHPASDEIYSSLSKLDEQL 318
SHP EI S L+++ QL
Sbjct: 690 PSHPEMIEICSMLNRVTGQL 709
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 45/256 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M RD +SW MI+ Y + ++F +A++ F EM+ G PD+ T+ + LSAC L L+L
Sbjct: 258 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 317
Query: 60 GREIHLYVM-QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL- 117
G EIH YV ++GF I +AL+DMYAKCG L+ + +F ++ KN+ CW S+I G
Sbjct: 318 GDEIHNYVRKELGFT--TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 375
Query: 118 -------------------------AVHGFAH-----EALAMFDRMIYENVEPNGVTFIS 147
++G+ +A+A+F M + ++P+ T ++
Sbjct: 376 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVT 435
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
+L+ C G +E+G+ GY IT +V ++++ SK G ++ +LE+
Sbjct: 436 LLTGCAQLGALEQGK-----WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 490
Query: 204 SKFQPNAVIWGALLGG 219
+ + A W +++ G
Sbjct: 491 LEDKDTAS-WTSIICG 505
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 103/212 (48%), Gaps = 4/212 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ M+ Y++ R+ L F +++ G+ PD T VL A L + G ++ +++
Sbjct: 165 YNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 224
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G D+D Y+ ++L+DMY + +++ + +F ++ ++ WN +I G +A+
Sbjct: 225 KTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAIN 284
Query: 129 MFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
F M E N +P+ T +S LSACT +E G + T +++ ++D+
Sbjct: 285 TFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDM 342
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+K G L A + + N + W +++ G
Sbjct: 343 YAKCGCLNIARNIFDEMSMK-NVICWTSMISG 373
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 90/199 (45%), Gaps = 6/199 (3%)
Query: 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GS 91
+S S Q + + + ++D ++I + +IG + D + L+ A G+
Sbjct: 87 SSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGN 146
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L + +F +++ +LF +N +++ A G + L +F ++ + + P+G T+ VL A
Sbjct: 147 LRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKA 206
Query: 152 CTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
V +G + R + G + V Y ++D+ + +E+A +L + ++
Sbjct: 207 IGCLRDVRQGEKVRGFIVKTGMDLDNYV--YNSLIDMYYELSNVENAKKLFDEMTTR-DS 263
Query: 211 VIWGALLGGCKLHRNLEIA 229
V W ++ G R E A
Sbjct: 264 VSWNVMISGYVRCRRFEDA 282
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 209/328 (63%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI++W+TMI Y+ N +E ++ F +M + PDQ ++ LS+CA LGALDLG
Sbjct: 273 MGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + F ++++ +AL+DMYAKCG++ R VF +++EK++ N+ I GLA +
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + A+F + + P+G TF+ +L C HAGL+++G R F +++C Y++ VEH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG+L+DA LI +PNA++WGALL GC+L ++ ++A + EL+ LE
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G L N+Y+ RW E ++R M G+ K+ PG SWIE+E V++F A DKS
Sbjct: 513 PWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGM-KKIPGYSWIELEGTVHEFLADDKS 571
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP SD+IY+ L L +++L +VP E
Sbjct: 572 HPLSDKIYAKLEDLGNEMRLMGFVPTTE 599
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 134/252 (53%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R +++WT + + Y+ + REA+D F +M G+ PD + VLSAC H+G LD G
Sbjct: 172 IPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I ++ ++ + ++ + LV++YAKCG ++++ VF + EK++ W+++I+G A +
Sbjct: 232 EWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASN 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
F E + F +M+ EN++P+ + + LS+C G ++ G +S+ + +
Sbjct: 292 SFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG-ISLIDRHEFLTNLFM 350
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL--HRNLEIAHIAVNELMI 238
++D+ +K G + E+ + K + + VI A + G H L A E +
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409
Query: 239 LEPNNSGYCTLL 250
+ P+ S + LL
Sbjct: 410 ISPDGSTFLGLL 421
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 2/215 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + T+I + N F E LD F ++ G++ T VL AC LG ++H
Sbjct: 75 NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLH 134
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V++ GF+ DV ++L+ +Y+ G L+ + VF ++ E+++ W ++ G G
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHR 194
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F +M+ V P+ + VLSAC H G ++ G M + +
Sbjct: 195 EAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHME-EMEMQKNSFVRTTL 253
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V+L +K G +E A + S + + V W ++ G
Sbjct: 254 VNLYAKCGKMEKARSVFDSMG-EKDIVTWSTMIQG 287
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T+ +V S HL +++H+ ++ D ++ + L+ S L+F
Sbjct: 18 TLISVASTFNHL------KQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHT 71
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG- 161
+ N+F +N++I G + HE L +F + + +G TF VL ACT A + G
Sbjct: 72 QFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGI 131
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L + CG++ +V ++ + S +G L DA ++ + + V W AL G
Sbjct: 132 DLHSLVVKCGFN--HDVAAMTSLLSIYSGSGRLNDAHKVFEEIP-ERSVVTWTALFSG 186
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 216/331 (65%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ W ++I ++Q+ A++ F MK++G S +Q T+ +VL AC + L+ G
Sbjct: 229 MVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAG 288
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V++ +D D+ + +AL+DMY KCGSL+ + +F ++ ++++ W++++ GLA +
Sbjct: 289 RQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQN 346
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +FD M + V PN VT + VL AC+HAGLVE+G F SM + I PE EH
Sbjct: 347 GKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREH 406
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDLL +AG L++A+E I +P++VIW LLG C++H+N +A A E++ LE
Sbjct: 407 HNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLE 466
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G LL N YA++ +W + K AM++ G+ K PG SWIE+E++V+ F A D S
Sbjct: 467 PDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKE-PGRSWIELEKRVHVFIAGDLS 525
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD I L++L ++K YVP+ E +L
Sbjct: 526 HPCSDTIIQELNRLIGRIKSLGYVPQTEFVL 556
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 1 MPARDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP R++++WTT++ S + + +EAL M+ G++P+ T ++VL AC G L
Sbjct: 130 MPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLT- 188
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H ++ G D DV++ S+L+D Y K G LD VF ++ ++L WNSII G A
Sbjct: 189 --AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQ 246
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+ +F RM N T SVL ACT ++E GR+ + ++
Sbjct: 247 SGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV---LKYDRDLI 303
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++D+ K G LEDA L Q + + W ++ G
Sbjct: 304 LHNALLDMYCKCGSLEDADALFHRMP-QRDVISWSTMVSG 342
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 11/186 (5%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIG-FDID----VYIGSALVDMYAKCGSLDR 94
D V++ ++ C G D GR IH +V G D +++ ++L MYAK G LD
Sbjct: 63 DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122
Query: 95 SLLVFFKLREKNLFCWNSIIEGLA-VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+L +F + +N+ W +++ LA G EAL M + V PN TF SVL ACT
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G++ + T + +V ++D K G L D + + V+W
Sbjct: 183 TPGMLTA----VHASTVKAGLDSDVFVRSSLIDAYVKLGDL-DGGRRVFDEMVTRDLVVW 237
Query: 214 GALLGG 219
+++ G
Sbjct: 238 NSIIAG 243
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 204/326 (62%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT ++ Y+ Q E+ F +M G+ +++T VL AC++ AL G
Sbjct: 408 MPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWG 467
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH V++ G D+ + +AL+ MY KCGS++ ++ V + +++ WN++I GLA +
Sbjct: 468 KEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQN 527
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F+ M E + PN TF++V+SAC LVEEGRR+F SM Y I P +H
Sbjct: 528 GRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKH 587
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L++AG L +A ++I + F+P+A +WGALL C+ H N+EI A + + LE
Sbjct: 588 YACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLE 647
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G L +YA W +V K+R MKE G++K PG SWIE+ +V+ F A D+S
Sbjct: 648 PQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKE-PGRSWIEVAGEVHSFVAGDQS 706
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP ++EIYS L L +Q+K YVP+
Sbjct: 707 HPRTEEIYSELEALTKQIKSLGYVPD 732
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SWTT+ Y+++ +E+L ++ M G+ P ++T VLSAC L AL+ G
Sbjct: 206 MASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG 265
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ DV + +AL MY KCG++ + VF L +++ WN++I GL
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDS 325
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA MF RM+ E V P+ VT++++LSAC G + G + + + +V
Sbjct: 326 GQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG-KEIHARAVKDGLVSDVRF 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++++ SKAG ++DA ++ + + V W AL+GG
Sbjct: 385 GNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGG 422
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 134/257 (52%), Gaps = 20/257 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW MI+ Y+ +EA + F M+ G+ PD+ T ++LSAC+ AL+ GRE+
Sbjct: 108 KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREV 167
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H+ VM+ G + +G+AL+ MYAKCGS+ + VF + ++ W ++ A G+A
Sbjct: 168 HVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYA 227
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG- 182
E+L + M+ E V P+ +T+++VLSAC +E+G++ + E EH+
Sbjct: 228 QESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIV-------ESEHHSD 280
Query: 183 -----CMVDLLSKAGLLEDALELIRSSKFQPN--AVIWGALLGGCKLHRNLEIAHIAVNE 235
+ + K G ++DA E+ + PN + W ++GG LE AH +
Sbjct: 281 VRVSTALTKMYIKCGAVKDAREVF---ECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHR 337
Query: 236 LM--ILEPNNSGYCTLL 250
++ + P+ Y +L
Sbjct: 338 MLKECVAPDRVTYLAIL 354
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 133/261 (50%), Gaps = 22/261 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+I+W TMI + Q EA F+ M ++PD+VT +LSACA G L G
Sbjct: 307 LPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG 366
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++ G DV G+AL++MY+K GS+ + VF ++ ++++ W +++ G A
Sbjct: 367 KEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADC 426
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E+ + F +M+ + VE N +T++ VL AC++ +++ G I EV
Sbjct: 427 GQVVESFSTFKKMLQQGVEANKITYMCVLKACSNP----------VALKWGKEIHAEVVK 476
Query: 181 YGCMVDLLS---------KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE-IA 229
G DL K G +EDA+ + + + V W L+GG + R LE +
Sbjct: 477 AGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGLAQNGRGLEALQ 535
Query: 230 HIAVNELMILEPNNSGYCTLL 250
V + + PN + + ++
Sbjct: 536 KFEVMKSEEMRPNATTFVNVM 556
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 4/193 (2%)
Query: 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86
D + G D +L +C L +G+++H ++++ G +VYI + L+ +Y
Sbjct: 30 DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
CGS++ + +F K K++ WN +I G A G EA +F M E +EP+ TF+
Sbjct: 90 VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149
Query: 147 SVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
S+LSAC+ + GR + M G + V + ++ + +K G + DA + +
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEAGLANNATVGN--ALISMYAKCGSVRDARRVFDAMA 207
Query: 206 FQPNAVIWGALLG 218
+ + V W L G
Sbjct: 208 SR-DEVSWTTLTG 219
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 209/332 (62%), Gaps = 3/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D+ISW T+IT Y+QN EA++ + M+ I P+Q T ++L A AH+GAL
Sbjct: 479 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH V++ +DV++ + L+D+Y KCG L ++ +F+++ +++ WN+II +
Sbjct: 539 GMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 598
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A + L +F M+ E V+P+ VTF+S+LSAC+H+G VEEG+ F M Y I P ++
Sbjct: 599 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLK 657
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE A + I+ QP+A IWGALLG C++H N+E+ A + L +
Sbjct: 658 HYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 717
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N GY LL N+YA V +W V K+R +E G+ K+ PG S IE+ RKV F ++
Sbjct: 718 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL-KKTPGWSTIEVNRKVDVFYTGNQ 776
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP EIY L L ++K Y+P+ +L
Sbjct: 777 SHPKCKEIYEELRVLTAKMKSLGYIPDYSFVL 808
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 6/231 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
+P +D+ +W +MI+ Y N F EA+ F ++ S I PD T VL AC G L
Sbjct: 177 IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH + ++GF +V++ ++L+ MY++ G + +F + +++ WN++I GL
Sbjct: 234 GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 293
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A +AL + D M E ++ N VT +S+L C G + L + + + ++
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI-KHGLEFDLF 352
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
++++ +K G LEDA + + F + V W +++ + + + AH
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQ-QMFITDVVSWNSIIAAYEQNDDPVTAH 402
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ QN +ALD +EM+ GI + VT+ ++L C LG +
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTA 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IHLYV++ G + D+++ +AL++MYAK G+L+ + F ++ ++ WNSII +
Sbjct: 336 MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A F +M +P+ +T +S+ S + + R M G+ + +V
Sbjct: 396 DDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW-LMEDVV 454
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K GLL+ A ++ + + + W L+ G
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITG 493
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H ++ G ++I + LV++YA G + S F ++ +K+++ WNS+I +G
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197
Query: 123 AHEALAMFDR-MIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
HEA+ F + ++ + P+ TF VL AC G + +GR+
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRK 236
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 203/311 (65%), Gaps = 5/311 (1%)
Query: 22 FREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81
F EAL+ F++M+ I P + + +VLSACA+LGALD GR IH Y + +D +G++
Sbjct: 235 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 294
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
LVDMYAKCG +D + VF K+ K + WN++I GLA+HG A +A+ +F +M ++ PN
Sbjct: 295 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPN 351
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
+TF+ VL+AC H GLV++G F SM Y + P++EHYGC+VDLL +AGLL +A +++
Sbjct: 352 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 411
Query: 202 RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWA 261
S +P +WGALLG C+ H N+E+ L+ LEP NSG TLL N+YA+ RW
Sbjct: 412 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 471
Query: 262 EVTKIRVAMKELGIEKRCPGSSWIEMER-KVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320
EV ++R MKE GI K PG+S I++ R +V++F D SHP +IY L K+ E+L++
Sbjct: 472 EVGEVRKLMKERGI-KTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQM 530
Query: 321 ASYVPELEAML 331
Y P+ +L
Sbjct: 531 EGYEPDPSQVL 541
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 20/252 (7%)
Query: 5 DIISWTTMI-TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ W MI C N+ F+ A+ + EM + P++ T VL AC+ G + G ++
Sbjct: 122 NVFLWNCMIKVCIENNEPFK-AILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQV 180
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLAVHGF 122
H ++++ G D +I S+ + MYA G L + + K E + C G
Sbjct: 181 HAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPD------RKGC 234
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F +M E + P SVLSAC + G +++GR Y+ ++ G
Sbjct: 235 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGR-----WIHTYAKRNSIQLDG 289
Query: 183 C----MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+VD+ +K G ++ A E+ W A++GG +H E A I + M
Sbjct: 290 VLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDA-IDLFSKMD 347
Query: 239 LEPNNSGYCTLL 250
+ PN + +L
Sbjct: 348 INPNEITFVGVL 359
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG-----SLDRSLLVFFKLREKNLFCWNSIIE 115
++ H +++ G D YI +LV YA S + SL VF +R+ N+F WN +I+
Sbjct: 72 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ +A+ ++ M+ + PN T+ +VL AC+ AG+V EG
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEG 177
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ SW MI + + + +A+D F++M I+P+++T VL+ACAH G + G
Sbjct: 315 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKG 371
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
I + + G + + +VD+ + G L + V + E W +++
Sbjct: 372 LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 431
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-THAGLVEE-GRRRFLSMTCGYSITP 176
HG E +++ E +EP ++LS AG EE G R L G TP
Sbjct: 432 KHGNV-ELGERVGKILLE-LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTP 489
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW M+ YSQ E L F EM G ++ A VLS CA + AL+ G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++ G+ + ++G+AL+ MY KCG+++ + F ++ E+++ WN++I G A H
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +FD M + +P+ +T + VL+AC+H+GLVE+G F SM + +T + EH
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L +A +L++ F+P++ +WGALLG ++HRN E+ A ++ LE
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W + K+RV M+E G+ K+ PG SWIE++ KV+ F+A D
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV-KKVPGFSWIEVQNKVHTFSAGDCV 641
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY+ L LD ++K A YV + +L
Sbjct: 642 HPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 672
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ISW +++ Y Q + EA + F+ M D V+ ++S A G + R +
Sbjct: 192 DAISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRL- 246
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD DV+ +A+V YA+ G L+ + VF + E+N WN+++
Sbjct: 247 -------FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA +F+ M NV ++ ++L+ AG++EE + F +M +++
Sbjct: 300 RMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS----- 350
Query: 181 YGCMVDLLSKAGLLEDALELI 201
+ M+ S+ G E+ L+L
Sbjct: 351 WAAMLAAYSQGGCSEETLQLF 371
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ +WT +++ Y+QN EA F+ M + V+ +++A +D +
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAK 306
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E L+ M ++ + + ++ YA+ G L+ + VF + +K+ W +++ + G
Sbjct: 307 E--LFNMMPCRNVASW--NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 362
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVEH 180
+ E L +F M N F VLS C +E G + + GY +
Sbjct: 363 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 416
Query: 181 YGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
GC V + K G +EDA + + + V W ++ G H
Sbjct: 417 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARH 462
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 23/273 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S+ T++ + + +A F+EM D VT ++S+ A+ G + L
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLA 150
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + + + D + ++ Y + G ++ + +F E + WN+++ G
Sbjct: 151 R----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQW 206
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +FDRM +V V++ ++S G + E RR F + + +V
Sbjct: 207 GKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLFDA-----APVRDVFT 257
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ +V ++ G+LE+A + + + NAV W A++ R ++ A EL +
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMDEA----KELFNMM 312
Query: 241 P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
P N +L YA+ E + M +
Sbjct: 313 PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A++ Y+ G L + +F + + + +N+++ LAV +A +FD M
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR--- 129
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE--HYGCMVDLLSKAGLLEDA 197
+ VT+ ++S+ + GLV R F + PE + + M+ + G +E+A
Sbjct: 130 -DSVTYNVMISSHANHGLVSLARHYF-------DLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 198 LELIRSSKFQPNAVIWGALLGG 219
L +S+ + +A+ W AL+ G
Sbjct: 182 RGLF-NSRTEWDAISWNALMSG 202
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 212/328 (64%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W+TMI YS N + E+L+ F MK + P++VT+ VLSACA LG+ +LG
Sbjct: 270 MPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELG 329
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I Y+ + Y+GSAL+DMY KCG + R+ VF ++ +K + WNS+I GLA++
Sbjct: 330 EQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALN 389
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
GFA +A+A++ M+ + V+PN +TF+++L+ACTHAGLV++G F M +P+VE
Sbjct: 390 GFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVE 449
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A +L++L
Sbjct: 450 HCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVL 509
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+S LL N+YA+ W +V +IR M+ ++K SWIE++ +V++F D
Sbjct: 510 EPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQK-LSAYSWIELDGEVHRFLVQDT 568
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIY+ + L QL+ S EL
Sbjct: 569 YHPRSAEIYNVVDGLGLQLERTSPDHEL 596
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF 72
++ S+ +E ++A + + G + + VL +CA A G + H + + G
Sbjct: 50 VSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGM 109
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN----------------------LF-- 108
DV++ +ALVD YAK G++D +++ F ++ K+ LF
Sbjct: 110 LGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDS 169
Query: 109 -------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
WNS+I A G EAL +FD+M+ E PN +T +V S C G +E G
Sbjct: 170 MPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETG 229
Query: 162 RR 163
RR
Sbjct: 230 RR 231
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/334 (42%), Positives = 216/334 (64%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWTT+I Y Q F+EALD F+EM +G P++ T+A+ L+ACA+L ALD G
Sbjct: 209 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF---FKLREKNLFCWNSIIEGL 117
R IH+Y+ + ++ + ++L+DMYAKCG +D + VF + L+ K ++ WN++I G
Sbjct: 269 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGY 327
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A+HG + EA+ +F++M E V PN VTF+++L+AC+H LVEEGR F SM Y I PE
Sbjct: 328 AMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE 387
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EHYGCMVDLL ++GLL++A E + + P+A IWGALLG C++H+++E +
Sbjct: 388 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIK 447
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ ++ G LL N+Y+ +W E +R + E+ K+ PG S IE+ +QF
Sbjct: 448 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKI-EVSGRKKTPGCSSIELNGVFHQFLVG 506
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+SHP + ++Y L ++ +LK A YVPE +L
Sbjct: 507 DRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVL 540
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 49/292 (16%)
Query: 1 MPARDIISWTTMITCY-----SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH-L 54
+P D+ + TMI + S + R L ++ SG P++ T V AC + L
Sbjct: 75 IPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSM---VRVSGFLPNRYTFVFVFKACGNGL 131
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN--- 111
G L+ G +I ++ ++IG + ++++ +A++ MYA G +D + VF +++L+ WN
Sbjct: 132 GVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMI 190
Query: 112 ----------------------------SIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+II G G EAL +F M+ PN
Sbjct: 191 GGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEF 250
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLLEDALELIR 202
T S L+AC A LV + R++ + S I ++D+ +K G ++ A ++
Sbjct: 251 TLASALAAC--ANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH 308
Query: 203 SS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
+ W A++GG +H + A I + E M +E PN + LL
Sbjct: 309 DEYGLKLKVWPWNAMIGGYAMHGKSKEA-IDLFEQMKVEKVSPNKVTFVALL 359
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 214/333 (64%), Gaps = 5/333 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG +P+ VTM ++L ACAHLGA+D+GR I
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 330
Query: 64 HLYVMQIGFDIDVYIGSAL----VDMYAKCGSLDRSLLVF-FKLREKNLFCWNSIIEGLA 118
H+Y+ + + V S+L +DMYAKCG +D + V ++L WN++I G A
Sbjct: 331 HVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFA 390
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ A +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SM Y+ITP++
Sbjct: 391 MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKL 450
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +GL ++A E+I + +P+ VIW +LL CK+H NLE+ +L+
Sbjct: 451 EHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIK 510
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA +W EV KIR + + G++K+ PG S IE++ V++F D
Sbjct: 511 IEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGD 570
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP + EIY L +++ L+ A +VP+ +L
Sbjct: 571 KLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVL 603
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 142/255 (55%), Gaps = 5/255 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ +++AL+ F EM + + PD+ TMATV+SACA G+++LG
Sbjct: 167 IPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELG 226
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y+KCG ++ + + L K++ WN++I G
Sbjct: 227 RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHM 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT---CGYSITPE 177
EAL +F M+ PN VT +S+L AC H G ++ GR + + G +T
Sbjct: 287 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNA 346
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
++D+ +K G ++ A ++ SS F + W A++ G +H A + +
Sbjct: 347 SSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR 406
Query: 238 I--LEPNNSGYCTLL 250
+EP++ + LL
Sbjct: 407 KNGIEPDDITFVGLL 421
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 34/257 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + W M ++ + AL + M + G+ P+ T +L +CA G
Sbjct: 35 IPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEG 94
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK------------------- 101
++IH +V+++GFD+D+Y+ ++L+ MYA+ G L+ + VF +
Sbjct: 95 QQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASR 154
Query: 102 ------------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+ K++ WN++I G A G +AL +F M+ NV+P+ T +V+
Sbjct: 155 GYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVV 214
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC +G +E G R+ S + ++ ++DL SK G +E A EL+ +
Sbjct: 215 SACAQSGSIELG-RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLS-NKD 272
Query: 210 AVIWGALLGGCKLHRNL 226
+ W L+GG H NL
Sbjct: 273 VISWNTLIGGYT-HMNL 288
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 206/312 (66%), Gaps = 1/312 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W MI+ + ++REALD F M++ G+ PD+VT+ VL++CA+LG L++G
Sbjct: 274 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 333
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + D ++G+AL+DMYAKCGS+D + VF ++ ++++ + ++I GLA+H
Sbjct: 334 KWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALH 393
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ A +F M +EPN VTF+ +L AC+H GLV EG++ F M+ Y + P+ EH
Sbjct: 394 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 453
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AGL+++A E+I + +P+ GALLG C++H N++I + +L L+
Sbjct: 454 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 513
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ G L+ N+Y+ V RW + KIR MK + K PG S IE++ V++F DKS
Sbjct: 514 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRK-TPGCSLIEVDGVVHEFRKGDKS 572
Query: 301 HPASDEIYSSLS 312
HP S I ++++
Sbjct: 573 HPRSKVIIANIN 584
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 144/253 (56%), Gaps = 5/253 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SWTT+I +++ + A++AF EM + + D T+ VLSAC++LG L+LG+
Sbjct: 173 PHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQ 232
Query: 62 EIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H Y+ I DV++G+AL+DMY KC L+ + VF ++ KN+ WN++I GLA
Sbjct: 233 KVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQ 292
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F M + V+P+ VT + VL++C + G++E G+ M + + +
Sbjct: 293 GRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVG 352
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++D+ +K G +++A + S K + + + A++ G LH A +E+
Sbjct: 353 -NALLDMYAKCGSIDEAFRVFESMK-RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVG 410
Query: 239 LEPNNSGYCTLLL 251
+EPN + LL+
Sbjct: 411 IEPNEVTFLGLLM 423
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 2/211 (0%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+I S+N ++ NEM G+ PD T+ VL A A + + G++IH ++
Sbjct: 79 NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138
Query: 70 IGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
G +VY+ + L+ +Y+ CGS+ VF + ++L W ++I+ G A+
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
F M + +G T + VLSAC++ G + G++ + + +V ++D+
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMY 258
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
K L A ++ + N V W A++ G
Sbjct: 259 LKCDDLNSAYKVFDEMPVK-NVVTWNAMISG 288
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/295 (46%), Positives = 197/295 (66%), Gaps = 1/295 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA+D++SW+ MI Y+++ + EAL+ F++M+ SG+ PD++TM +V+SACA++GAL+
Sbjct: 102 MPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKA 161
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +V + IG+AL+DM++KCGSL +L VF + +KN+ W SII A+H
Sbjct: 162 RCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMH 221
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F+ M E ++PNGVTF+ +L AC HAGLVEEGR F M Y I P EH
Sbjct: 222 GDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEH 281
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +A LL A +LI+S +PN VIWG+LL C++H +LE+ A +++ L+
Sbjct: 282 YGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELD 341
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
PN+ G LL N+YAE W +V ++R M+ G K+ G SW+E+ V+QFA
Sbjct: 342 PNHGGAQVLLSNIYAEYGNWNDVKEVRGVMEVQGTWKK-KGCSWMELNGSVHQFA 395
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 33/223 (14%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC-- 89
MK S + PDQV +ATVLS CAH L G+ IH Y++ ID + AL++MYA C
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 90 -----------------------------GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
G ++ + +F + K++ W+++I G A
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL +F M V+P+ +T +SV+SAC + G +E+ R S +S+ +
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKA-RCIHSFVENHSMCKILPI 179
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ SK G L AL++ + Q N V W +++ +H
Sbjct: 180 GNALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMH 221
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 212/328 (64%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W+TMI YS N + E+L+ F MK + P++VT+ VLSACA LG+ +LG
Sbjct: 270 MPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELG 329
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I Y+ + Y+GSAL+DMY KCG + R+ VF ++ +K + WNS+I GLA++
Sbjct: 330 EQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALN 389
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
GFA +A+A++ M+ + V+PN +TF+++L+ACTHAGLV++G F M +P+VE
Sbjct: 390 GFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVE 449
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A +L++L
Sbjct: 450 HCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVL 509
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+S LL N+YA+ W +V +IR M+ ++K SWIE++ +V++F D
Sbjct: 510 EPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQK-LSAYSWIELDGEVHRFLVQDT 568
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIY+ + L QL+ S EL
Sbjct: 569 YHPRSAEIYNVVDGLGLQLERTSPDHEL 596
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF 72
++ S+ +E ++A + + G + + VL +CA A G + H + + G
Sbjct: 50 VSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGM 109
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN----------------------LF-- 108
DV++ +ALVD YAK G++D +++ F ++ K+ LF
Sbjct: 110 LGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDS 169
Query: 109 -------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
WNS+I A G EAL +FD+M+ E PN +T +V S C G +E G
Sbjct: 170 MPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETG 229
Query: 162 RR 163
RR
Sbjct: 230 RR 231
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 213/328 (64%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISWT+MI + + F +AL+ F EM+ +G+ PD VT+ +VL+ACA+LGAL LG
Sbjct: 184 MSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLG 243
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I+ +VM+ F ++ I ++L+DMY++CG + + VF ++ +++L WNS+I G A++
Sbjct: 244 LWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALN 303
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL F+ M E P+GV+F L+AC+H+GLV+EG + F M I+P +EH
Sbjct: 304 GHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEH 363
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL S+AG LEDAL +I + +PN V+ G+LL C+ H ++ +A + L ++
Sbjct: 364 YGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVD 423
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + LL N+YA V RW +K+R MK LGI K+ PG S IEM+ +++F A DK+
Sbjct: 424 PGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKK-PGFSSIEMDGSIHEFVAGDKT 482
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H + IY+ L L +L++ YVPE+E
Sbjct: 483 HVETQNIYAMLDHLFLELRICGYVPEIE 510
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 40/264 (15%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH--LGALDL 59
P I+SWT+ I + +N Q EA F+ M+ +G+ P+ +T T+LSAC L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 60 GREIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G IH YV ++G D +V +G+ALVDMY+KCG LD + L+F ++ +N WN++I+G
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 119 VHGFAHEALAMFDRMIYEN-------------------------------VEPNGVTFIS 147
+G EA+ +FD+M + VEP+ VT IS
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 148 VLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
VL+AC + G + G RF+ ++ ++D+ S+ G + A ++
Sbjct: 230 VLAACANLGALGLGLWINRFVMKQ---DFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP 286
Query: 206 FQPNAVIWGALLGGCKLHRNLEIA 229
+ + V W +++ G L+ + E A
Sbjct: 287 -KRSLVSWNSMIVGFALNGHAEEA 309
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 201/323 (62%), Gaps = 1/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ + SW MI+ Y+QN +A+ F EM+ + P+ VT+ ++LSACA LGAL LG+ +
Sbjct: 372 KSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWV 431
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + F+ ++++ +AL+DMYAKCGS+ + +F + EKN WN++I G +HG+
Sbjct: 432 HDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYG 491
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
HEAL +F+ M++ V P GVTF+SVL AC+HAGLV EG F SM + P EHY C
Sbjct: 492 HEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYAC 551
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L+ AL+ IR +P +WGALLG C +H++ +A +A ++L L+P N
Sbjct: 552 MVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQN 611
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY LL N+Y+ + E +R +K + K PG + IE+ ++ F + D+SHP
Sbjct: 612 VGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAK-TPGCTLIEVANTLHIFTSGDQSHPQ 670
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
+ IY+ L KL +++ A + E
Sbjct: 671 ATAIYAMLEKLTGKMREAGFQTE 693
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 2/219 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++S+ MI+ Y+ N + ++ F E+ SG + ++ ++ G L L R IH
Sbjct: 272 DLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIH 331
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + G + + +AL +Y++ ++ + L+F + EK+L WN++I G A +G
Sbjct: 332 GFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTE 391
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+++F M V PN VT S+LSAC G + G+ + S + +
Sbjct: 392 KAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH-DLINRESFESNIFVSTAL 450
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+D+ +K G + +A L S + NAV W A++ G LH
Sbjct: 451 IDMYAKCGSITEAQRLF-SMMPEKNAVTWNAMISGYGLH 488
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 135/307 (43%), Gaps = 36/307 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W TM++ +N F EA+ F +M GI D T+A VL A L L LG
Sbjct: 167 MLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALG 226
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I M++GF Y+ + L +Y+KCG ++ + L+F ++ + +L +N++I G +
Sbjct: 227 MGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCN 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISV-----------LSACTHAGLVEEGRRRFL--- 166
++ +F ++ + N + + + L+ C H + G
Sbjct: 287 NETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS 346
Query: 167 -SMTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
++T YS E+E + M+ ++ GL E A+ L ++ + +
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP--NNSGYCTLLLNMYAEVSRWAEVTK 265
PN V ++L C L + V++L+ E +N T L++MYA+ E +
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKW-VHDLINRESFESNIFVSTALIDMYAKCGSITEAQR 465
Query: 266 IRVAMKE 272
+ M E
Sbjct: 466 LFSMMPE 472
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ ++W MI+ Y + EAL+ FNEM +S +SP VT +VL AC+H G + G
Sbjct: 470 MPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREG 529
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI V GF+ + +VD+ + G+LD++L K+ E W +++
Sbjct: 530 DEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACM 589
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+H A+ A D++ ++P V + +LS AG
Sbjct: 590 IHKDANLARLASDKLF--ELDPQNVGYYVLLSNIYSAG 625
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 10/241 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P D+ + +I +S N A+ + + K++ + PD T A V+S + LG L
Sbjct: 68 IPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLL 127
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ GF D+++GSA+V Y K + + VF + E++ WN+++ GL
Sbjct: 128 LHAHSIVA---GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVK 184
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGY-SITPE 177
+ EA+ +F M+ + + T +VL + G + L+M G+ S
Sbjct: 185 NSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYV 244
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ C L SK G +E A L+ QP+ V + A++ G + E + EL+
Sbjct: 245 ITGLAC---LYSKCGEIETA-RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELL 300
Query: 238 I 238
+
Sbjct: 301 V 301
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+RDI+SW +I Y+QN + A++ +M+ + P++ + ++L+AC+ AL+ G
Sbjct: 694 MPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG 753
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++ DV +G+AL+ MYAKCGS + VF + EKN+ WN++I A H
Sbjct: 754 KRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQH 813
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL F+ M E ++P+G TF S+LSAC HAGLV EG + F SM Y + P +EH
Sbjct: 814 GLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEH 873
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+V LL +A ++A LI F P+A +W LLG C++H N+ +A A N + L
Sbjct: 874 YGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLN 933
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N LL N+YA RW +V KIR M+ GI K PG SWIE++ +++F A+D+S
Sbjct: 934 ARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKE-PGRSWIEVDNIIHEFIAADRS 992
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY+ L +L +++ A Y P+ + +L
Sbjct: 993 HPETAEIYAELKRLSVEMEEAGYFPDTQHVL 1023
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 4/218 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
ARD+ISW +MI ++Q+ + A F EM+N + PD +T A+VLS C + AL+LG++
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH + + G +DV +G+AL++MY +CGSL + VF L+ +++ W ++I G A G
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHY 181
+A+ +F +M E P TF S+L CT + ++EG++ + GY + V +
Sbjct: 614 DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN- 672
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ SK+G + DA E+ + + V W ++ G
Sbjct: 673 -ALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG 708
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW +I Y++ + EA+ + +M++ G+ P +VT +LSACA+ A G
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH +++ G + ++ +AL++MY +CGSL + VF + +++ WNS+I G A H
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F M E +EP+ +TF SVLS C + +E G++ +T + +V
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNL 569
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
++++ + G L+DA + S + + + + W A++GGC
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 127/223 (56%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW ++I+CY+Q ++A F EM+N+G P+++T ++L+AC L+ G
Sbjct: 88 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ G+ D + ++L+ MY KCG L R+ VF + +++ +N+++ A
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ E L +F +M E + P+ VT+I++L A T +++EG +R +T + ++
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRV 266
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + + G ++ A + + + + + V++ AL+ H
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAALAQH 308
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 119/220 (54%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SWT MI + + +A++ F +M+N G P + T +++L C LD G+++
Sbjct: 596 RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKV 655
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y++ G+++D +G+AL+ Y+K GS+ + VF K+ +++ WN II G A +G
Sbjct: 656 IAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLG 715
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +M ++V PN +F+S+L+AC+ +EEG+R + + +V
Sbjct: 716 QTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIV-KRKLQGDVRVGAA 774
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + +K G +A E+ + + N V W A++ H
Sbjct: 775 LISMYAKCGSQGEAQEVF-DNIIEKNVVTWNAMINAYAQH 813
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 136/249 (54%), Gaps = 4/249 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ + +I +Q+ EA + + M++ G++ ++ T ++L+AC+ AL+ G+ I
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ + G DV IG+AL+ MYA+CG L ++ +F+ + +++L WN+II G A
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDR 412
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ ++ +M E V+P VTF+ +LSAC ++ +G+ + I
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANA 471
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEP 241
++++ + G L +A + ++ + + + W +++ G H + E A+ E+ LEP
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530
Query: 242 NNSGYCTLL 250
+N + ++L
Sbjct: 531 DNITFASVL 539
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 116/216 (53%), Gaps = 2/216 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++S+ TM+ Y+Q +E L F +M + GISPD+VT +L A LD G+ I
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ G + D+ +G+ALV M +CG +D + F ++++ +N++I LA HG
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHN 311
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA + RM + V N T++S+L+AC+ + +E G + S + +V+
Sbjct: 312 VEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNA 370
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + ++ G L A EL + + + + W A++ G
Sbjct: 371 LISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86
D N + ++ T +L C L + IH +++ D+++ + L++MY
Sbjct: 13 DVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMY 72
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
KC S+ + VF ++ +++ WNS+I A GF +A +F+ M PN +T+I
Sbjct: 73 VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132
Query: 147 SVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
S+L+AC +E G++ + GY P V++ ++ + K G L A ++ +
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVF--AG 188
Query: 206 FQPNAVI-WGALLG 218
P V+ + +LG
Sbjct: 189 ISPRDVVSYNTMLG 202
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/329 (42%), Positives = 210/329 (63%), Gaps = 2/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R I+SWTTMI Y++ + +AL F EM+ GI PD++++ +VL ACA LGAL++G
Sbjct: 198 MPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG 257
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y + GF + + +ALV+MYAKCG +D + +F ++ EK++ W+++I GLA H
Sbjct: 258 KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANH 317
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + A+ +F+ M V PNGVTF+ VLSAC HAGL EG R F M Y + P++EH
Sbjct: 318 GKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEH 377
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL ++G +E AL+ I QP++ W +LL C++H NLEIA +A+ +L+ LE
Sbjct: 378 YGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLE 437
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SG LL N+YA++ +W V+ +R ++ I K+ PG S IE+ V +F + D S
Sbjct: 438 PEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRI-KKTPGCSLIEVNNLVQEFVSGDDS 496
Query: 301 HPASDEIYSSLSKLD-EQLKLASYVPELE 328
P S E++ L L Q++ ++ +E
Sbjct: 497 KPFSQEVFWILKGLTLHQIRTKDFIEFVE 525
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 117/252 (46%), Gaps = 36/252 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ S+ +I Y+ N + A+ FN+M SPD+ T V+ +CA L LG+++
Sbjct: 69 NVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQV 128
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG------- 116
H +V + G +AL+DMY KCG + + V+ ++ E++ WNS+I G
Sbjct: 129 HAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQM 188
Query: 117 -------------------LAVHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSAC 152
++G+A +AL +F M +EP+ ++ ISVL AC
Sbjct: 189 KSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPAC 248
Query: 153 THAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G +E G+ S G+ V + +V++ +K G +++A L + + + +
Sbjct: 249 AQLGALEVGKWIHKYSEKSGFLKNAGV--FNALVEMYAKCGCIDEAWGLF-NQMIEKDVI 305
Query: 212 IWGALLGGCKLH 223
W ++GG H
Sbjct: 306 SWSTMIGGLANH 317
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 113/245 (46%), Gaps = 15/245 (6%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
G+ + T L C + L ++IH +++++ ++ + ++D+ +D +
Sbjct: 2 GVRELENRFVTTLRNCPKIAEL---KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYA 58
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHE-ALAMFDRMI-YENVEPNGVTFISVLSACT 153
++F +L N+F +N+II H H A+ +F++M+ ++ P+ TF V+ +C
Sbjct: 59 TMIFQQLENPNVFSYNAIIRTYT-HNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSC- 116
Query: 154 HAGLV-EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
AGL+ ++ + C + ++D+ +K G + A + + + +AV
Sbjct: 117 -AGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQ-VYEEMTERDAVS 174
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMK 271
W +L+ G ++ A +E+ P + T ++N YA +A+ I M+
Sbjct: 175 WNSLISGHVRLGQMKSAREVFDEM----PCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 272 ELGIE 276
+GIE
Sbjct: 231 VVGIE 235
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 213/330 (64%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG SP+ VTM ++L ACAHLGA+++GR I
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 343
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G ++L+DMYAKCG ++ + VF + ++L WN++I G A+HG
Sbjct: 344 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHG 403
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A+ A +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SM Y ITP++EHY
Sbjct: 404 RANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHY 463
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL +GL ++A E+I + + +P+ VIW +LL CK+H N+E+ L+ +EP
Sbjct: 464 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 523
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N G LL N+YA RW EV KIR + + G+ K+ PG S IE++ V++F DK H
Sbjct: 524 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGDKFH 582
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 583 PRNREIYGMLEEMEVLLEEAGFVPDTSEVL 612
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ +EAL+ F EM + + PD+ TM +V+SACA +++LG
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y KCG ++ + +F L K++ WN++I G
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPEVE 179
EAL +F M+ PN VT +S+L AC H G +E GR + + +
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 359
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
H ++D+ +K G +E A ++ S + W A++ G +H
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVF-DSILNRSLSSWNAMIFGFAMH 402
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T +L +CA A G++IH
Sbjct: 52 NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIH 111
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-------------------- 104
+V+++G+D+D+Y+ ++L+ MY + G L+ + VF +
Sbjct: 112 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 171
Query: 105 -----------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
K++ WN++I G A G EAL +F M+ NV P+ T +SV+SAC
Sbjct: 172 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 231
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ +E G R+ S + ++ ++DL K G +E A L ++ + + W
Sbjct: 232 QSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISW 289
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ + T+L + A E+ RW V
Sbjct: 290 NTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 345
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 142/334 (42%), Positives = 216/334 (64%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWTT+I Y Q F+EALD F+EM +G P++ T+A+ L+ACA+L ALD G
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 183
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF---FKLREKNLFCWNSIIEGL 117
R IH+Y+ + ++ + ++L+DMYAKCG +D + VF + L+ K ++ WN++I G
Sbjct: 184 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGY 242
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A+HG + EA+ +F++M E V PN VTF+++L+AC+H LVEEGR F SM Y I PE
Sbjct: 243 AMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE 302
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EHYGCMVDLL ++GLL++A E + + P+A IWGALLG C++H+++E +
Sbjct: 303 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIK 362
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ ++ G LL N+Y+ +W E +R + E+ K+ PG S IE+ +QF
Sbjct: 363 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKI-EVSGRKKTPGCSSIELNGVFHQFLVG 421
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+SHP + ++Y L ++ +LK A YVPE +L
Sbjct: 422 DRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVL 455
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 39/252 (15%)
Query: 35 SGISPDQVTMATVLSACAH-LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
SG P++ T V AC + LG L+ G +I ++ ++IG + ++++ +A++ MYA G +D
Sbjct: 26 SGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVD 84
Query: 94 RSLLVFFKLREKNLFCWN-------------------------------SIIEGLAVHGF 122
+ VF +++L+ WN +II G G
Sbjct: 85 EARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGC 144
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F M+ PN T S L+AC + +++GR + + I
Sbjct: 145 FKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKS-EIKMNERLLA 203
Query: 183 CMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE- 240
++D+ +K G ++ A ++ + W A++GG +H + A I + E M +E
Sbjct: 204 SLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEA-IDLFEQMKVEK 262
Query: 241 --PNNSGYCTLL 250
PN + LL
Sbjct: 263 VSPNKVTFVALL 274
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 202/327 (61%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++S+T +I Y + +Q + L F E++ GI P++ T ++++ ACA+ AL+ G ++
Sbjct: 272 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 331
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H VM+I FD D ++ S LVDMY KCG L+ ++ F ++ + WNS++ HG
Sbjct: 332 HAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 391
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ F+RM+ V+PN +TFIS+L+ C+HAGLVEEG F SM Y + P EHY C
Sbjct: 392 KDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 451
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
++DLL +AG L++A E I F+PNA W + LG C++H + E+ +A +L+ LEP N
Sbjct: 452 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 511
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N+YA +W +V +R+ M++ G K+ PG SW+++ K + F A D SH
Sbjct: 512 SGALVLLSNIYANERQWEDVRSVRMRMRD-GNVKKLPGYSWVDVGYKTHVFGAEDWSHXR 570
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
IY L L +Q+K A YVP +++
Sbjct: 571 KSAIYEKLDXLLDQIKAAGYVPXTDSV 597
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 3/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ SQN +F EA+ F M+ G P Q ++ + ACA LG++++G
Sbjct: 66 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++ G ++++GS L DMY+KCG++ + VF ++ K+ W ++I+G +
Sbjct: 126 KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +MI E V + S L AC + GR S+ ++
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFESDIFV 244
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--MI 238
+ D+ SKAG +E A + N V + L+ G +E EL
Sbjct: 245 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 304
Query: 239 LEPNNSGYCTLL 250
+EPN + +L+
Sbjct: 305 IEPNEFTFSSLI 316
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 2/198 (1%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D +A V+ A L G+++H ++ G+ ++ + LV+MY+KCG LD +L +F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
+ ++NL W ++I GL+ + EA+ F M P F S + AC G +E
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G ++ + + I E+ + D+ SK G + DA ++ + + V W A++ G
Sbjct: 124 MG-KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181
Query: 220 CKLHRNLEIAHIAVNELM 237
E A +A +++
Sbjct: 182 YSKIGEFEEALLAFKKMI 199
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 203/327 (62%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ + W ++I Y Q E ++ EM S + PD+ T++ VLSACA +GA +LG
Sbjct: 269 IPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLG 328
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + + G DV+IG+AL+DMYAKCG + + VF ++ E+N+ WN+I+ G A H
Sbjct: 329 NWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASH 387
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +F M P+ +TF++VL AC H+GLVE G++ F M Y I P VEH
Sbjct: 388 GQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEH 447
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL++A ELI+ +PN V+WGALL C +H N+EI A + ++ L
Sbjct: 448 YGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLN 507
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ G +L N+YA R+ V +R M E GI K G S IE+ V++F +DK
Sbjct: 508 AMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKS-HGCSMIEIGDVVHEFVVADKM 566
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S+EIYS L +L ++LK+A YVP L
Sbjct: 567 HPRSEEIYSVLDELSKKLKMAGYVPLL 593
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 9/231 (3%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGR 61
A+D++ W +IT Y++ ++ F EM + + P++ TM ++ AC L LGR
Sbjct: 168 AKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGR 227
Query: 62 EIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+M+ + V + +AL+++Y KCG LD + +F ++ EKN WNS+I G
Sbjct: 228 AIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQI 287
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G +E + + M N++P+ T VLSAC G G RF + +
Sbjct: 288 GSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGT 347
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++D+ +K G + A ++ + N W A+L G H E A
Sbjct: 348 ----ALIDMYAKCGFIGAARKVFDQMN-ERNVATWNAILSGYASHGQAESA 393
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGREI 63
D + MI YS ++ A+ +N+M+ I D+ T V ACA A++ G+E+
Sbjct: 68 DGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEV 127
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++IG+++D ++ S+L++ Y CG + + VF + K++ WN++I G A G
Sbjct: 128 HGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMV 187
Query: 124 HEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
++ +F M+ + V PN T + ++ AC + ++ GR M + V+
Sbjct: 188 LDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEA 247
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG-CKL 222
+++L K G L+ A +L + N V+W +L+ G C++
Sbjct: 248 ALINLYVKCGYLDGARKLFDEIP-EKNTVVWNSLICGYCQI 287
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 192/288 (66%), Gaps = 1/288 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISWT MIT YSQ QF EAL F EM S + PD++T+A+VLSACAH G+LD+G
Sbjct: 270 MSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVG 329
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H Y+ + D+Y+G+AL+DMY KCG ++++L VF ++R+K+ W SII GLAV+
Sbjct: 330 EAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVN 389
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA AL F RM+ E V+P+ F+ +L AC HAGLV++G F SM Y + PE++H
Sbjct: 390 GFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKH 449
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS++G L+ A E I+ P+ VIW LL ++H N+ +A IA +L+ L+
Sbjct: 450 YGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELD 509
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
P+NSG L N YA +RW + K+R M++ ++K GSS IEME
Sbjct: 510 PSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPS-GSSCIEME 556
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 143/284 (50%), Gaps = 35/284 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +++ Y Q K+FRE L F M+ +G+ D VTM V+ AC LG +
Sbjct: 138 MPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVA 197
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y+ + +IDVY+G+ L+DMY + G + + VF +++ +NL WN++I G
Sbjct: 198 DAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKA 257
Query: 121 G--------------------------FAH-----EALAMFDRMIYENVEPNGVTFISVL 149
G ++ EAL +F M+ V+P+ +T SVL
Sbjct: 258 GNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVL 317
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC H G ++ G Y + ++ ++D+ K G++E ALE+ + + + +
Sbjct: 318 SACAHTGSLDVGEAAH-DYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMR-KKD 375
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLLL 251
+V W +++ G ++ + A + ++ +++P++ + +LL
Sbjct: 376 SVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILL 419
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 129/267 (48%), Gaps = 11/267 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI +S + Q EA+ +N M G+ + +T + ACA + + G IH V+
Sbjct: 45 WNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVL 104
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF+ +Y+ +AL++MY CG L + VF ++ E++L WNS++ G E L
Sbjct: 105 KLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLG 164
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+F+ M V+ + VT + V+ ACT G V + ++ ++ +V ++D
Sbjct: 165 VFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEEN---NVEIDVYLGNTLID 221
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM-ILEPNNSG 245
+ + GL+ A + +++ N V W A++ G NL +A EL + +
Sbjct: 222 MYGRRGLVHLARGVFDQMQWR-NLVSWNAMIMGYGKAGNL----VAARELFDAMSQRDVI 276
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKE 272
T ++ Y++ ++ E ++ M E
Sbjct: 277 SWTNMITSYSQAGQFTEALRLFKEMME 303
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 206/331 (62%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+ D++SWTT+I+ +Q Q EA++ F M + P+ + +L +LGA LG
Sbjct: 510 MPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLG 569
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++G D + + +ALV MY KC S D SL VF + E+++F WN+II G A H
Sbjct: 570 QQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQH 628
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ M+ M+ V PN VTF+ +L AC+H+GLV+EG + F SM+ Y +TP +EH
Sbjct: 629 GLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEH 688
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG ++ A I +P++VIW ALLG CK+H+N+EI A +L +E
Sbjct: 689 YACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIE 748
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G +L N+Y+ W EV K+R MKE G+ K PG SW++++ K++ F D+
Sbjct: 749 PSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKD-PGCSWMQIKNKMHSFVTGDEE 807
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H IY++L +L LK YVP+ + +L
Sbjct: 808 HEQIQNIYATLWELYTLLKATGYVPDTDFVL 838
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 11/237 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SWT MI+ Y +Q A D F M G++P+Q + +VLSA HLG +
Sbjct: 183 MPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGIL 242
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAK-CGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
IH+ V + GF+ DV +G+A+++ Y K LD ++ F + +N + W++II L+
Sbjct: 243 ESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQ 302
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G +A A++ R ++V + S+L+ G +++ + F + P V
Sbjct: 303 AGRIDDAFAVYQRDPLKSVP----SRTSMLTGLARYGRIDDAKILFDQIH-----EPNVV 353
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ M+ + ++++A +L F+ N + W ++ G + E A +++ L
Sbjct: 354 SWNAMITGYMQNEMVDEAEDLFNRMPFR-NTISWAGMIAGYARNGRSEQALVSLQAL 409
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW MI Y++N + +AL + + G+ P ++ + AC+++ AL+ G
Sbjct: 378 MPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETG 437
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++ G + Y+ +AL+ +Y K S+ +F ++ K+ +NS + L +
Sbjct: 438 KQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQN 497
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
EA +F+ M P+ V++ +++SAC A E F SM
Sbjct: 498 NLFDEARDVFNNM----PSPDVVSWTTIISACAQADQGNEAVEIFRSM 541
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDII+W +MI Y N DA + ++ + T +LS A G +
Sbjct: 59 MPFRDIIAWNSMIFAYCNNGM----PDAGRSLADAISGGNLRTGTILLSGYARAGRVRDA 114
Query: 61 REIHLYVMQIGFDIDVYIG-SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + G + + +A+V Y + G + + +F + +++ WN+++ G
Sbjct: 115 RRVF-----DGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCH 169
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITP 176
EA +F+RM E NGV++ ++S L+E+ R F +M C +TP
Sbjct: 170 SQLMEEARNLFERM----PERNGVSWTVMISGYV---LIEQHGRAWDMFRTMLC-EGMTP 221
Query: 177 EVEHYGCM---VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
E + + V L K G+LE L+ + F+ + V+ A+L G
Sbjct: 222 EQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNG 267
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW MI Y +N EA++ ++ M+ G PD V++ +VL AC AL LG
Sbjct: 270 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLG 329
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+ + ++ + +AL+DMYAKCG LDR+ VF ++ +++ W ++I
Sbjct: 330 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFS 389
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+A+F +M + P+ + F++ L+AC+HAGL+EEGR F MT Y ITP +EH
Sbjct: 390 GRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 449
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVDLL +AG +++A + I+ +PN +WGALLG C++H N +I +A ++L L
Sbjct: 450 LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLA 509
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SGY LL N+YA+ RW EVT IR MK G+ K+ PG+S +E+ R ++ F D+S
Sbjct: 510 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGL-KKNPGASNVEVNRIIHTFLVGDRS 568
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EIY L L +++K YVP+ E+ L
Sbjct: 569 HPQSAEIYRELDVLVKKMKELGYVPDSESAL 599
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 29/271 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R++I MI Y N +RE + F M + + PD T VL AC+ G + +G
Sbjct: 101 IPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIG 160
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++G +++G+ LV MY KCG L + LV ++ +++ WNS++ G A +
Sbjct: 161 KKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQN 220
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEV 178
+AL + M + + T S+L A ++ V + F M ++
Sbjct: 221 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVS--- 277
Query: 179 EHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRN 225
+ M+ + K + +A+EL + + F+P+AV ++L C K+H
Sbjct: 278 --WNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY 335
Query: 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
+E + N ++LE L++MYA+
Sbjct: 336 IERKKLIPN--LLLE-------NALIDMYAK 357
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ + +G L+ YA + + VF ++ E+N+ N +I +
Sbjct: 60 RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF E + +F M +V+P+ TF VL AC+ +G + G++ S T G S T V
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVG 179
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V + K G L +A L+ + + V W +L+ G
Sbjct: 180 N--GLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLVAG 216
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 206/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW+ MIT Y+Q FREAL+ FN+M+ +G P+ + L+ACA LGALD G
Sbjct: 205 MPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG 264
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV + +D +G+AL+DMYAKCG ++ + VF ++ ++++F + S+I GLA H
Sbjct: 265 RWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANH 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + A+ MF RM E V PN VTFI +LSAC+ GLVEEG R F SMT Y I P V+H
Sbjct: 325 GHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQH 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AG+LEDA ++R +P++ + GALL C++H ++E+ V L
Sbjct: 385 YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERS 444
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++ G LL NMYA ++W +V K+R M+E + K+ PG S IE++ V++F A D S
Sbjct: 445 LDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKV-KKVPGCSLIEVDGAVFEFVAGDMS 503
Query: 301 HPASDEIYSSLSKLDEQLK 319
H DEI L +D+ LK
Sbjct: 504 HVFMDEIVLLLLGIDKHLK 522
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 56/287 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R W TM+ ++ K+ L + M ++G P+ T + +L ACA L L G
Sbjct: 73 LPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFG 132
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC-----------GSLDRSLL------------ 97
+H +++G++ ++ + L+ +YA C GS++R ++
Sbjct: 133 ILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKS 192
Query: 98 --------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+F ++ EKN W+++I G A G EAL +F+ M PN + L
Sbjct: 193 GQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGAL 252
Query: 150 SACTHAGLVEEGR---------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
+AC G +++GR R L G + ++D+ +K G +E A +
Sbjct: 253 TACAFLGALDQGRWIHAYVDRNRMVLDRILGTA----------LIDMYAKCGCVETACRV 302
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
+ + +L+ G H H A M N G C
Sbjct: 303 F-DEMLDRDVFAFTSLISGLANH-----GHSATAIEMFTRMQNEGVC 343
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW M+ YSQ E L F EM G ++ A VLS CA + AL+ G
Sbjct: 412 MPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECG 471
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++ G+ + ++G+AL+ MY KCGS++ + F ++ E+++ WN++I G A H
Sbjct: 472 MQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARH 531
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +FD M + +P+ +T + VL+AC+H+GLVE+G F SM + + + EH
Sbjct: 532 GFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEH 591
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++A+ L++ F+P++ +WGALLG ++HRN E+ A ++ LE
Sbjct: 592 YTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELE 651
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W +V K+R M E G+ K+ PG SWIE++ KV+ F+ D
Sbjct: 652 PENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGV-KKVPGFSWIEVQNKVHTFSVGDSV 710
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++IY+ L LD ++K A YV + +L
Sbjct: 711 HPEREDIYAFLEDLDIRMKKAGYVSATDMVL 741
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D ISW ++ Y Q Q EA FN+M D V+ T++S A G + R +
Sbjct: 261 DAISWNALMAGYVQRSQIEEAQKMFNKMPQR----DVVSWNTMVSGYARRGDMAEARRL- 315
Query: 65 LYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD+ DV+ +A+V YA+ G L+ + VF + +KN WN+++
Sbjct: 316 -------FDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQR 368
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA +FD M NV ++ ++L+ AG+++E R F M +++
Sbjct: 369 RMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVS----- 419
Query: 181 YGCMVDLLSKAGLLEDALELIR 202
+ M+ S+ G E+ L+L +
Sbjct: 420 WAAMLAAYSQIGFSEETLQLFK 441
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 56/330 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS------------GIS---------- 38
MP R ++ TM+ Y+ N + +AL F + G+S
Sbjct: 133 MPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALF 192
Query: 39 -----PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
D V+ ++S+ A+ G + L R + + + D + ++ Y + G +
Sbjct: 193 DEMPVKDSVSYNVMISSHANHGLVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRIQ 248
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F E + WN+++ G EA MF++M +V V++ +++S
Sbjct: 249 EARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSGYA 304
Query: 154 HAGLVEEGRRRFLSMTCGYSITP--EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G + E RR F + P +V + +V ++ G+LE+A + + NAV
Sbjct: 305 RRGDMAEARRLF-------DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP-DKNAV 356
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270
W A++ R +E A EL P N +L YA+ E I
Sbjct: 357 SWNAMMAAYVQRRMMEEA----KELFDAMPCRNVASWNTMLTGYAQAGMLDEARAI---- 408
Query: 271 KELGIEKRCPGSSWIEMERKVYQFAASDKS 300
G+ + SW M Q S+++
Sbjct: 409 --FGMMPQKDAVSWAAMLAAYSQIGFSEET 436
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 200/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWTTMI Y +N + E F + NS I P+ T A VL+ACA L A DLG
Sbjct: 312 MEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLG 371
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y++++GFD SALV MY+KCG ++ + VF L + +LF W S++ G A H
Sbjct: 372 KQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQH 431
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F+ ++ +P+G+ FI VLSAC HAGLV++G F S+ + +T ++H
Sbjct: 432 GQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDH 491
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL++AG +A +I +P+ IW ALLGGC++H NLE+A A L +E
Sbjct: 492 YACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIE 551
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N L N+YA AE IR M GI K+ PG SWIE+ R+V+ F+ D S
Sbjct: 552 PENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKK-PGMSWIEIRREVHVFSVGDNS 610
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EI LS+L +++K YVP+ +L
Sbjct: 611 HPKSKEILEYLSELSKRMKEVGYVPDTNFVL 641
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 5/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
MP RD SWT +I+ Q+ + EAL+ + M+ S ++ T+++ L+A A + +L +
Sbjct: 210 MPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHM 269
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G++IH ++M++G D D + +L+DMY KCGS++ + +F K+ E+++ W ++I
Sbjct: 270 GKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLK 329
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEV 178
+G E A+F ++ N+ PN TF VL+AC + G++ M G+
Sbjct: 330 NGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSA 389
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + SK G +E+A + QP+ W +LL G H
Sbjct: 390 A--SALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQH 431
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
T+L C AL G+++H ++ G I +YI + L+DMYAKCGSL + VF ++ +
Sbjct: 124 TLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHR 182
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF--ISVLSACTHAGLVEEG 161
+L WN +I G G +A +FD+M PN F +++S C EE
Sbjct: 183 DLCSWNIMISGYVKGGNFEKARNLFDKM------PNRDNFSWTAIISGCVQHNRPEEA 234
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++I+WTTM+ Y Q+ Q AL FN M GI P+QVT + AC++L L G
Sbjct: 279 MPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + F D +I S L+++YAKCG + + VF +EK++ WN +I A H
Sbjct: 339 QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHH 398
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ ++++M + +PN VT++ +LSAC+H+GLV+EG R F M SI EH
Sbjct: 399 GVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEH 458
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DL S+AG L DA LI K +P++ +W ALLGGC H N I +A L+ E
Sbjct: 459 YTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAE 518
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN+G TLL N+YA +W E KIR M + G++K+ PG SWIE+E KV+ F + DKS
Sbjct: 519 PNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQ-PGCSWIEVENKVHVFVSRDKS 577
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H SD I S L + + +++A VP + L
Sbjct: 578 HSESDLINSLLQDIHDIMRMACTVPRDDMQL 608
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 138/317 (43%), Gaps = 40/317 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WTTM+ +++ EA F+ M + V+ ++S A +D
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNV----VSWNAMISGYARNHRID-- 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E H M++ D+ + ++ + + L+R+ +F K+ +N+ W +++ G
Sbjct: 240 -EAHDLFMKMPTR-DIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQS 297
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F+ M+ E + PN VTF+ + AC++ + EG ++ M C S +
Sbjct: 298 MQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG-QQVHQMICKTSFQFDTFI 356
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+++L +K G + A ++ SK + + + W ++ H + + I + E M
Sbjct: 357 ESTLMNLYAKCGEIRLARKVFDLSK-EKDVISWNGMIAAYA-HHGVGVEAIHLYEKMQEK 414
Query: 239 -LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
+PN+ Y LL C S ++ +++++
Sbjct: 415 GYKPNDVTYVGLL--------------------------SACSHSGLVDEGLRIFEYMVK 448
Query: 298 DKSHPASDEIYSSLSKL 314
D+S DE Y+ L L
Sbjct: 449 DRSIAVRDEHYTCLIDL 465
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 50/274 (18%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQ----VTMATVLSACAHLGAL 57
P RD++SWT ++ Y++ +A F+ PD VT +LS A G +
Sbjct: 62 PDRDVVSWTALVAAYARQGMLHDARALFDR-------PDARRNVVTWTALLSGYARAGRV 114
Query: 58 D--------------------------LGREIHLYVMQIGFDI-DVYIGSALVDMYAKCG 90
D GR + + G + D + L+ + G
Sbjct: 115 DEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSG 174
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
++D++ +F ++ E+N+ W +++ G+A G EA A+FD M NV V++ +++S
Sbjct: 175 NMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNV----VSWNAMIS 230
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
++E F+ M T ++ + M+ + LE A +L + N
Sbjct: 231 GYARNHRIDEAHDLFMKMP-----TRDIASWNIMITGFIQDRDLERAQDLFDKMP-RRNV 284
Query: 211 VIWGALLGGCKLHRNLEIAHIAVNELMI--LEPN 242
+ W ++ G E A N +++ + PN
Sbjct: 285 ITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPN 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A G + + +F + ++++ W +++ A G H+A A+FDR + N VT+
Sbjct: 46 AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDR---PDARRNVVTWT 102
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204
++LS AG V+E F M PE V + M++ + AG + DA L
Sbjct: 103 ALLSGYARAGRVDEAEALFQRM-------PERNVVSWNTMLEAYTSAGRVRDAWTLFDGM 155
Query: 205 KFQPNAVIWGALLGGCKLHRNLEIAH 230
+ +A W LL N++ A
Sbjct: 156 PVR-DAGSWNILLAALVRSGNMDKAR 180
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 208/320 (65%), Gaps = 4/320 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++ WT MI Y Q F +A+ F EM+ + PD+ T+ T+L+ CA LGAL+ G+
Sbjct: 437 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGK 496
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH Y+ + +DV +G+AL++MY+KCG +D+SL +F++L +K+ W SII GLA++G
Sbjct: 497 WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNG 556
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M +P+ +TFI VLSAC+H GLVEEGRR F SM + I P+VEHY
Sbjct: 557 KTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHY 616
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVI---WGALLGGCKLHRNLEIAHIAVNELMI 238
GC++DLL +AGLL++A ELI+ + ++ +GALL C++H N+++ +L
Sbjct: 617 GCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLEN 676
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E +S TLL N+YA V RW + K+R MKELG+ K+ PG S IE++ V++F D
Sbjct: 677 IESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGV-KKMPGCSLIEVDGIVHEFLVGD 735
Query: 299 KSHPASDEIYSSLSKLDEQL 318
SHP EI S L+++ QL
Sbjct: 736 PSHPEMMEICSMLNRVTGQL 755
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 45/256 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M RD +SW MI+ Y + ++F +A++ F EM+ G PD+ T+ + LSAC L L+L
Sbjct: 304 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 363
Query: 60 GREIHLYVM-QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL- 117
G EIH YV ++GF I +AL+DMYAKCG L+ + +F ++ KN+ CW S+I G
Sbjct: 364 GDEIHNYVRKELGFT--TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 421
Query: 118 -------------------------AVHGFAH-----EALAMFDRMIYENVEPNGVTFIS 147
++G+ +A+A+F M + V+P+ T ++
Sbjct: 422 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVT 481
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
+L+ C G +E+G+ GY IT +V ++++ SK G ++ +LE+
Sbjct: 482 LLTGCAQLGALEQGK-----WIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 536
Query: 204 SKFQPNAVIWGALLGG 219
+ + A W +++ G
Sbjct: 537 LEDKDTAS-WTSIICG 551
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 103/212 (48%), Gaps = 4/212 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ M+ Y++ R+ L F +++ G+ PD T VL A L + G ++ +++
Sbjct: 211 YNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 270
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G D+D Y+ ++L+DMY + +++ + +F ++ ++ WN +I G +A+
Sbjct: 271 KTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAIN 330
Query: 129 MFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
F M E N +P+ T +S LSACT +E G + T +++ ++D+
Sbjct: 331 TFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDM 388
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+K G L A + + N + W +++ G
Sbjct: 389 YAKCGCLNIARNIFDEMSMK-NVICWTSMISG 419
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 89/192 (46%), Gaps = 6/192 (3%)
Query: 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLV 98
++T + + + ++D ++I + +IG + D + L+ A G+L + +
Sbjct: 140 KLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKI 199
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F +++ +LF +N +++ A G + L +F ++ + + P+G T+ VL A V
Sbjct: 200 FNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDV 259
Query: 159 EEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+G + R + G + V Y ++D+ + +E+A +L + ++V W ++
Sbjct: 260 RQGEKVRGFIVKTGMDLDNYV--YNSLIDMYYELSNVENAKKLFDEMTTR-DSVSWNVMI 316
Query: 218 GGCKLHRNLEIA 229
G R E A
Sbjct: 317 SGYVRCRRFEDA 328
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 205/326 (62%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ISWTTMI+ Y Q +EAL F+EM+NS + PD V++A LSACA LGAL+ G
Sbjct: 236 MVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 295
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + +D +G L+DMYAKCG + +L VF ++ K++ W ++I G A H
Sbjct: 296 KWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYH 355
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA++ F M ++PN +TF +VL+AC++ GLVEEG+ F +M Y++ P +EH
Sbjct: 356 GHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEH 415
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS+AGLL++A I+ +PNAVIWGALL C++H+N+E+ L+ ++
Sbjct: 416 YGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 475
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G N++A +W + + R MKE G+ K PG S I +E ++F A D+S
Sbjct: 476 PYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAK-VPGCSTISLEGTTHEFLAGDRS 534
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP ++I S + +L+ YVPE
Sbjct: 535 HPEIEKIQSKWKIMRRKLEENGYVPE 560
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 37/280 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D W MI +S + + +L + M + T ++L AC++L AL+ +IH
Sbjct: 108 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIH 167
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++G++ DVY ++L++ YA G+ + L+F ++ + + WNS+I+G A G
Sbjct: 168 AQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMD 227
Query: 125 EALAMFDRMIYEN-------------------------------VEPNGVTFISVLSACT 153
AL +F +M+ +N VEP+ V+ + LSAC
Sbjct: 228 IALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACA 287
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVI 212
G +E+G+ +T V GC ++D+ +K G + +ALE+ ++ + + +
Sbjct: 288 QLGALEQGKWIHSYLTKTRIRMDSV--LGCVLIDMYAKCGDMGEALEVFKNIQ-RKSVQA 344
Query: 213 WGALLGGCKLHRNLE--IAHIAVNELMILEPNNSGYCTLL 250
W AL+ G H + I+ + M ++PN + T+L
Sbjct: 345 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVL 384
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS------LDRSLLVFFKLREKNLFCWNSII 114
++IH +++ G D Y A+ + C S L + +VF + F WN +I
Sbjct: 60 KQIHARMLKTGLIQDSY---AITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYS 173
G + +L ++ RM+ + N TF S+L AC++ +EE + +T GY
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYE 176
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+V +++ + G + A L+ +P+AV W +++ G ++IA
Sbjct: 177 --NDVYAVNSLINSYAATGNFKLA-HLLFDRIPKPDAVSWNSVIKGYAKAGKMDIA 229
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 209/320 (65%), Gaps = 2/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW+ MI YSQ Q EA+ F EM +G+ P T+ +VLSACA LG LDLG
Sbjct: 337 MPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLG 396
Query: 61 REIHL-YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R I+ Y++ + V +G+AL+DM+AKCG + + +F ++ E+N+ WN++I AV
Sbjct: 397 RWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + EA+ +F+++ EN+ P+ +TF+ +L++C+H+GLV EGRR F M Y I P VE
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CM+DLL K GLLE+A E+ R + + WGALL C++H N+EI ++L+ L
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVEL 576
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P++SG L+ +YA ++W +V +R+ M++ G++K PG S IE+E K + F +D
Sbjct: 577 DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKN-PGCSSIEVEGKFHDFLVADV 635
Query: 300 SHPASDEIYSSLSKLDEQLK 319
SH S+EIYS+L + LK
Sbjct: 636 SHACSEEIYSALKNIYFHLK 655
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 33/261 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP RD++SWTT++ Y++ EA F M G+ P+ VT+ +SA +G L
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H YV + G V + +ALVDM+ KCG + + VF + K+++ W S++ A
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323
Query: 120 HG-------------------------------FAHEALAMFDRMIYENVEPNGVTFISV 148
G EA+ +F MI V+P T +SV
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
LSAC G ++ GR + + I V ++D+ +K G + +A +L +
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLF-DEMAER 442
Query: 209 NAVIWGALLGGCKLHRNLEIA 229
N V W ++ +H E A
Sbjct: 443 NVVSWNTMIMAHAVHGQSEEA 463
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 53 HLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111
H G G IH ++ GF V +G+ALV YA SLD + VF ++ E+++ W
Sbjct: 154 HGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWT 213
Query: 112 SIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170
++++G A G A EA +F RM + + PN VT ++ +SA GL+ G +T
Sbjct: 214 TLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTE 273
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
G + V +VD+ K G + A E+
Sbjct: 274 G-GVARSVNLDNALVDMFGKCGCVRYAREVF 303
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 205/326 (62%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISW TMI YS+N EAL F +M + PD T+A +L ACA L +LD G
Sbjct: 160 MPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRG 218
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H ++++ GF D + +ALVDMY KCG + L+F + K+L W +I G +H
Sbjct: 219 KEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMH 278
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF + A+ F+ M +EP+ V+FIS+L AC+H+GL++EG R F M ++ P++EH
Sbjct: 279 GFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEH 338
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL+++G L A + I+S +P+A IWGALL GC++H ++++A + LE
Sbjct: 339 YACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELE 398
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+GY LL N YAE +W EV K+R + G++K PG SWIE++ KV+ F A + S
Sbjct: 399 PENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKN-PGCSWIEVKSKVHIFLAGNSS 457
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP + +I L +L ++K Y P+
Sbjct: 458 HPQAKKIEVLLKRLRSKMKEEGYFPK 483
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 139/253 (54%), Gaps = 7/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +++WT++I Y++ EA+ F+EM G+SPD T+ TVL ACA G+L+ G
Sbjct: 59 MSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ + ++++ +AL+DMYAKCGS++ + VF ++ K++ WN++I G + +
Sbjct: 119 KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKN 178
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVE 179
+EAL++F M+ E ++P+G T +L AC ++ G+ + G+ +V
Sbjct: 179 SLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ +VD+ K G+ A L+ + + W ++ G +H A NE+
Sbjct: 238 N--ALVDMYVKCGVPVLA-RLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQA 294
Query: 239 -LEPNNSGYCTLL 250
+EP+ + ++L
Sbjct: 295 GIEPDEVSFISIL 307
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
M ++L ACA+ G + LGR +H ++ + L+DMYAKCG LD ++LVF +
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR- 162
+ + W S+I A G + EA+ +F M E V P+ T +VL AC G +E G+
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120
Query: 163 -RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + + ++D+ +K G +EDA + + + + W ++GG
Sbjct: 121 VHNYIREN---DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGG 174
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 199/326 (61%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D + W MI +SQN + A+D F +M SG D V+++ LSACA+ AL G
Sbjct: 541 MPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYG 600
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H +V++ F D ++ S L+DMY+KCG L + VF + KN WNSII H
Sbjct: 601 KELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNH 660
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L +F M+ ++P+ VTF+ ++SAC HAGLV+EG F MT Y I +EH
Sbjct: 661 GRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEH 720
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDL +AG L +A + I+S F P+A WG+LLG C+LH N+E+A +A L+ L+
Sbjct: 721 FACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELD 780
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNNSGY LL N++A W V K+R MKE G++K PG SWI++ + F+A+D
Sbjct: 781 PNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQK-IPGYSWIDVNGGTHMFSAADGC 839
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY L L +L+ YVP+
Sbjct: 840 HPQSVEIYLILKNLLLELRKHGYVPQ 865
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 6/212 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD I W M+ Y +N F AL F EM+NS + P+ V+ +LS CA G + G
Sbjct: 238 LPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAG 297
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V++ GF+ D + + ++ MY+KCG+L + +F + + + WN +I G +
Sbjct: 298 IQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQN 357
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA+A+F M+ V+ + +TF S L + +G ++ + S + + +V
Sbjct: 358 GFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVH-SYIVRHGVPFDVYL 416
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+VD+ K G +E A + FQ N ++
Sbjct: 417 KSALVDIYFKGGDVEMACK-----TFQQNTLV 443
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 4/214 (1%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ W +I +S F AL F M S ++PD+ T V+ AC L + L + +H
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+GF +D++IGS+L+ +Y G + + +F +L ++ WN ++ G +G + A
Sbjct: 203 ARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSA 262
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCMV 185
L F M V+PN V+F+ +LS C G+V G + L + G+ P V + ++
Sbjct: 263 LGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN--TII 320
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ SK G L DA ++ Q + V W L+ G
Sbjct: 321 TMYSKCGNLFDARKIFDIMP-QTDTVTWNGLIAG 353
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 20/226 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D ++W +I Y QN EA+ F M SG+ D +T A+ L + G+L
Sbjct: 339 MPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYC 398
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ G DVY+ SALVD+Y K G ++ + F + ++ ++I G ++
Sbjct: 399 KEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLN 458
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTC--G 171
G EAL +F +I E + PN +T SVL AC ++ G+ ++ L C G
Sbjct: 459 GLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVG 518
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
SIT + +K+G L+ A + R + ++V W ++
Sbjct: 519 SSITY----------MYAKSGRLDLAYQFFRRMPVK-DSVCWNLMI 553
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 2/219 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ T MI+ Y N EAL+ F + G+ P+ +TMA+VL ACA L +L LG+E+H
Sbjct: 444 DVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELH 503
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G + +GS++ MYAK G LD + F ++ K+ CWN +I + +G
Sbjct: 504 CDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPE 563
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F +M + + V+ + LSAC + + G + S + +
Sbjct: 564 LAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYG-KELHCFVVRNSFISDTFVASTL 622
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+D+ SK G L A + ++ N V W +++ H
Sbjct: 623 IDMYSKCGKLALARSVFDMMDWK-NEVSWNSIIAAYGNH 660
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 6/193 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH V+ G + + +GS ++ MY C S +F +L+ WN +I G ++
Sbjct: 96 RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVE 179
G AL F RM+ NV P+ TF V+ AC V + L+ + G+ + +
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM-- 237
++ L + G + DA L + + ++W +L G + + A E+
Sbjct: 216 --SSLIKLYTDNGYIHDAKYLFDELPVR-DCILWNVMLNGYVKNGDFNSALGTFQEMRNS 272
Query: 238 ILEPNNSGYCTLL 250
++PN+ + LL
Sbjct: 273 CVKPNSVSFVCLL 285
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 214/325 (65%), Gaps = 2/325 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++DI+SWT+MITC N EAL+ F +K + I PD + + + LSA A+L +L G+E
Sbjct: 512 SKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKE 571
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++++ GF ++ I S+LVDMYA CG+++ S +F +++++L W S+I +HG
Sbjct: 572 IHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGC 631
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
++A+A+F +M +NV P+ +TF+++L AC+H+GL+ EG+R F M GY + P EHY
Sbjct: 632 GNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA 691
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLLS++ LE+A +R+ +P++ IW ALLG C +H N E+ +A EL+ +
Sbjct: 692 CMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTE 751
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSG L+ N++A RW +V ++R+ MK G++K PG SWIE++ K++ F A DKSHP
Sbjct: 752 NSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKN-PGCSWIEVDNKIHTFMARDKSHP 810
Query: 303 ASDEIYSSLSKLDEQL-KLASYVPE 326
+D+IY L++ + L K Y+ +
Sbjct: 811 QTDDIYLKLAQFTKLLEKKGGYIAQ 835
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 16/234 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW T+++ QN+ + +AL+ F +M+NSG PDQV++ +++A G L G
Sbjct: 309 MLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y ++ G D ++ IG+ LVDMYAKC + F + EK+L W +II G A +
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
F EA+ +F ++ + ++ + + SVL AC+ GL R F+ GY ++
Sbjct: 429 EFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLAD 483
Query: 181 ---YGCMVDLLSKAGLLE---DALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
+V++ + G ++ A E IRS + V W +++ C +H L +
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSK----DIVSWTSMITCC-VHNGLPV 532
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 126/225 (56%), Gaps = 7/225 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWTT+I Y+QN+ EA++ F +++ G+ D + + +VL AC+ L + +
Sbjct: 410 MHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFI 469
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH YV + D+ + +A+V++Y + G +D + F +R K++ W S+I +
Sbjct: 470 REIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHN 528
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G EAL +F + N++P+ + IS LSA + +++G+ FL + G+ + +
Sbjct: 529 GLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL-IRKGFFLEGPI 587
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ + G +E++ ++ S K Q + ++W +++ +H
Sbjct: 588 A--SSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R I SW ++ + + ++ EA++ + +M+ G++ D T +VL AC LG LG
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
EIH ++ G+ V++ +AL+ MY KCG L + ++F + +++ WNSII
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G EAL++F RM V N TF++ L V+ G ++ +V
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFA-DV 283
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + +K G +EDA + S + + V W LL G
Sbjct: 284 YVANALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLLSG 323
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 82/162 (50%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SW ++I+ + EAL F M+ G++ + T L + LG
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH V++ DVY+ +AL+ MYAKCG ++ + VF + ++ WN+++ GL +
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+AL F M +P+ V+ +++++A +G + +G+
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGK 369
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C AL G+++H +++ + ++ + LV MY KCGSL ++ VF ++ E+
Sbjct: 52 LLDLCVAAKALPQGQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RF 165
+F WN+++ G EA+ ++ M V + TF SVL AC G G
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169
Query: 166 LSMTCGYS-----ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW-----GA 215
+++ CGY + YG D L A +L D + + + N++I G
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGD-LGGARVLFDGIMMEKEDTVSWNSIISAHVAEGN 228
Query: 216 LLGGCKLHRNLEIAHIAVN 234
L L R ++ +A N
Sbjct: 229 CLEALSLFRRMQEVGVASN 247
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWT+++T N + EAL F EM+ GI PDQ+ +A VLSACA L L+ G
Sbjct: 28 MTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFG 87
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++ G + + ++LV MYAKCG ++ + VF + +++ W ++I G A +
Sbjct: 88 KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQN 147
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E+L ++ MI V+P+ +TFI +L AC+HAGLVE GR F SM Y I P EH
Sbjct: 148 GRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEH 207
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL ++G L +A EL+ QP+A +W ALL C++H N+E+ A N L LE
Sbjct: 208 YACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELE 267
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+ LL N+Y+ +W E K R MK G+ K PG SWIEM KV++F + D+S
Sbjct: 268 PKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE-PGCSWIEMSSKVHRFMSEDRS 326
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIYS + ++ +K A YVP++ L
Sbjct: 327 HPRTAEIYSKVDEIMILIKEAGYVPDMNFAL 357
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+ +ALVDMYAK G D + VF K+ +K++ W S++ G +G EAL +F M
Sbjct: 4 VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
+ P+ + +VLSAC ++E G++ FL G S++ + +V + +K G +
Sbjct: 64 IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVD----NSLVSMYAKCGCI 119
Query: 195 EDALELIRSSKFQPNAVIWGALLGG 219
EDA ++ S + Q + + W AL+ G
Sbjct: 120 EDANKVFDSMEIQ-DVITWTALIVG 143
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 211/333 (63%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP ++ +SW+ MI C+++N+ +AL+ F M + P+ VTM VL ACA L AL+
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALE 303
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ IH Y+++ G D + + +AL+ MY +CG + VF ++ +++ WNS+I
Sbjct: 304 QGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYG 363
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HGF +A+ +F+ MI++ P+ ++FI+VL AC+HAGLVEEG+ F SM Y I P +
Sbjct: 364 MHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGM 423
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L++A++LI F+P +WG+LLG C++H N+E+A A L
Sbjct: 424 EHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFE 483
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W+E + ++ G++K PG SWIE++RKVY F + D
Sbjct: 484 LEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQK-LPGCSWIEVKRKVYSFVSVD 542
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P +EI++ L KL ++K YVP+ +L
Sbjct: 543 EHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVL 575
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 110/212 (51%), Gaps = 9/212 (4%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
+P Q T ++ +CA +L G ++H ++ GFD D ++ + L++MY + GS+DR+
Sbjct: 75 NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK 134
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + RE+ ++ WN++ LA+ G E L ++ +M + + + T+ VL AC + L
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSEL 194
Query: 158 ----VEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+++G+ + GY V ++D+ +K G + A + + + N V
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHV--MTTLLDVYAKFGSVSYANSVFCAMPTK-NFVS 251
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
W A++ C + + + + +LM+LE ++S
Sbjct: 252 WSAMI-ACFAKNEMPMKALELFQLMMLEAHDS 282
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 206/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW+ MIT Y+Q FREAL+ FN+M+ +G P+ + L+ACA LGALD G
Sbjct: 180 MPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV + +D +G+AL+DMYAKCG ++ + VF ++ ++++F + S+I GLA H
Sbjct: 240 RWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANH 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + A+ MF RM E V PN VTFI +LSAC+ GLVEEG R F SMT Y I P V+H
Sbjct: 300 GHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQH 359
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AG+LEDA ++R +P++ + GALL C++H ++E+ V L
Sbjct: 360 YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERS 419
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++ G LL NMYA ++W +V K+R M+E + K+ PG S IE++ V++F A D S
Sbjct: 420 LDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKV-KKVPGCSLIEVDGAVFEFVAGDMS 478
Query: 301 HPASDEIYSSLSKLDEQLK 319
H DEI L +D+ LK
Sbjct: 479 HVFMDEIVLLLLGIDKHLK 497
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 56/287 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R W TM+ ++ K+ L + M ++G P+ T + +L ACA L L G
Sbjct: 48 LPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFG 107
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC-----------GSLDRSLL------------ 97
+H +++G++ ++ + L+ +YA C GS++R ++
Sbjct: 108 ILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKS 167
Query: 98 --------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+F ++ EKN W+++I G A G EAL +F+ M PN + L
Sbjct: 168 GQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGAL 227
Query: 150 SACTHAGLVEEGR---------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
+AC G +++GR R L G + ++D+ +K G +E A +
Sbjct: 228 TACAFLGALDQGRWIHAYVDRNRMVLDRILGTA----------LIDMYAKCGCVETACRV 277
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
+ + +L+ G H H A M N G C
Sbjct: 278 F-DEMLDRDVFAFTSLISGLANH-----GHSATAIEMFTRMQNEGVC 318
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 212/333 (63%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALD 58
+P D +SW +I+C N++ R+AL F+ M+++ G PD VT +L ACA+LGAL+
Sbjct: 229 IPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALE 288
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G +H Y+ + G+D + + ++L+ MY++CG L+++ +F ++ E+N+ W+++I G A
Sbjct: 289 FGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFA 348
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG+ EA+ F++M V P+ T VLSAC+H GLV++G F M+ + I P +
Sbjct: 349 MHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNI 408
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
HYGCMVDLL +AGLL+ A +LI S +P++ +W LLG C++HR+ + + L+
Sbjct: 409 HHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIE 468
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+ +G LLLN+Y+ V W +VT +R MKE GI+ PG S IE++ KV++F D
Sbjct: 469 LKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQT-SPGCSTIELKGKVHEFVVDD 527
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +DEIY L ++ +QLK+A YV EL + L
Sbjct: 528 ILHPRTDEIYEMLDEIGKQLKIAGYVAELSSEL 560
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 22/226 (9%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ MI YS + + + EM+ G+ P+ ++ + V+ +C + +L G +IH ++
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARIL 195
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G D + + L+D+Y+ C + + VF ++ + + WN +I + +AL
Sbjct: 196 RDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALR 255
Query: 129 MFDRM--IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---- 182
MFD M + EP+ VT + +L AC + G +E G R + +E +G
Sbjct: 256 MFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGER----------VHNYIEEHGYDGA 305
Query: 183 -----CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + S+ G LE A + + + N V W A++ G +H
Sbjct: 306 LNLCNSLITMYSRCGRLEKAYSIFKRMD-ERNVVSWSAMISGFAMH 350
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 192/297 (64%), Gaps = 1/297 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++SW MIT YS +F E L F +M+++G+ PD T+ +VLSACAH+GAL G
Sbjct: 202 PVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGE 261
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y+ + G ID ++ +ALVDMY+KCGS++++L VF K++ WNSII GL+ HG
Sbjct: 262 WVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHG 321
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
AL +F M+ E +PN VTF+ VLSAC+ AGL++EGR F M + I P +EHY
Sbjct: 322 SGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHY 381
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL + GLLE+A EL++ + +V+W +LLG C+ H N+E+A +L+ L P
Sbjct: 382 GCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSP 441
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
S L NMYA + RW +V ++R M+ G+ K PG S IE++ VY+F A +
Sbjct: 442 QESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD-PGCSMIEVDGTVYEFLAGE 497
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 40/286 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W T+I Y+ + AL F++M ++ + PD+ T L +C ++ G
Sbjct: 68 IPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEG 127
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS-------LDRSL----------------- 96
R+IH +V++ G D++I + L+ +YA CG LDR L
Sbjct: 128 RQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAER 187
Query: 97 --------LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
VF + KN+ WN++I G + G E L +F+ M + V+P+ T +SV
Sbjct: 188 GLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSV 247
Query: 149 LSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
LSAC H G + +G ++ G SI V +VD+ SK G +E ALE+ S
Sbjct: 248 LSACAHVGALSQGEWVHAYIDKN-GISIDGFVA--TALVDMYSKCGSIEKALEVFNSC-L 303
Query: 207 QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
+ + W +++ G H + + A +E+++ +PN + +L
Sbjct: 304 RKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVL 349
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 15/223 (6%)
Query: 61 REIHLYVMQIGFDIDVYIGSAL---VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+ H ++++ G + S L V + ++ + +F ++ N + WN+II
Sbjct: 24 HQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAY 83
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSI 174
A AL +F +M++ +V P+ TF L +C VEEGR+ L G +
Sbjct: 84 ANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDL 143
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV- 233
+ ++ L + G +EDA L+ + + V W ALL +E+A V
Sbjct: 144 FIQ----NTLIHLYASCGCIEDARHLL-DRMLERDVVSWNALLSAYAERGLMELASRRVF 198
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
E + N ++ Y+ R++EV + M+ G++
Sbjct: 199 GETPV---KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVK 238
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 209/323 (64%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD I+W MI+ Y+Q + REAL+ F+ M+ G+ + V M +VLSAC LGALD G
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H Y+ + I V + + LVD+YAKCG +++++ VF+ + EKN++ W+S + GLA++
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF + L +F M + V PN VTF+SVL C+ G V+EG+R F SM + I P++EH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL ++AG LEDA+ +I+ +P+A +W +LL ++++NLE+ +A +++ LE
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G LL N+YA+ + W V+ +R +MK G+ K+ PG S +E+ +V++F DKS
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQ-PGCSVMEVNGEVHEFFVGDKS 498
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
HP +I + + +L+LA Y
Sbjct: 499 HPKYTQIDAVWKDISRRLRLAGY 521
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 49/254 (19%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDLGREI 63
+ + +MI + ++ ++ D + + +SG + PD T+ ++ AC L + G ++
Sbjct: 71 LFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQV 130
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLD----------------RSLLV--------- 98
H ++ GFD D ++ + L+ +YA+ G LD R+ +V
Sbjct: 131 HGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV 190
Query: 99 ------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
F + E++ WN++I G A G + EAL +F M E V+ NGV ISVLSAC
Sbjct: 191 VFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSAC 250
Query: 153 THAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
T G +++GR R + +T + T +VDL +K G +E A+E+ +
Sbjct: 251 TQLGALDQGRWAHSYIERNKIKITVRLATT--------LVDLYAKCGDMEKAMEVFWGME 302
Query: 206 FQPNAVIWGALLGG 219
+ N W + L G
Sbjct: 303 -EKNVYTWSSALNG 315
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 208/327 (63%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT+++ C QN + EA++ F EM+ G P+ VT+ VL A A++ AL GR H
Sbjct: 257 NVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAH 316
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ GF DVY+ SALVDMYAKCG + + ++F + +N+ WN++I G A++G A
Sbjct: 317 CFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAV 376
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ MF M+ +P+ VTF +L+ACT AGL EEGR F M Y ++P +EHY CM
Sbjct: 377 NAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACM 436
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LL +AG L++A +LI F+P+A IWG+LLG C++H N+++A +A +L LEP N+
Sbjct: 437 VTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENA 496
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W V ++R MK++G++K G SWIE++ KV+ A D SHP
Sbjct: 497 GNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKE-KGCSWIEIKNKVHMLLAGDDSHPMM 555
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
I +++L+ Q++ +VP + +L
Sbjct: 556 TAIIEKINQLNIQMRKLGFVPSTDFVL 582
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 40/252 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDLGREI 63
++I+W +++ +++ + R+A+ A M G+ PD ++ LSA +G + +G+++
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQL 179
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCG-------------------------SLDRSLLV 98
H Y ++ G D + +AL+DMY KCG L R+ V
Sbjct: 180 HGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQV 239
Query: 99 FFKLR----------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
LR E N+ W SI+ +G EA+ F M + EPN VT V
Sbjct: 240 CEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCV 299
Query: 149 LSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L A + + GR ++ G+ +V +VD+ +K G ++DA +I +
Sbjct: 300 LPAFANVAALMHGRSAHCFALRKGF--LHDVYVSSALVDMYAKCGRVKDA-RIIFDTMVS 356
Query: 208 PNAVIWGALLGG 219
N V W A++GG
Sbjct: 357 RNVVSWNAMIGG 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +R+++SW MI Y+ + A+ F+ M PD VT +L+AC G + G
Sbjct: 354 MVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEG 413
Query: 61 R----EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIE 115
R E+H + G + + +V + + G LD + + + E + + W S++
Sbjct: 414 RHYFKEMH---NEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLG 470
Query: 116 GLAVHG 121
VHG
Sbjct: 471 SCRVHG 476
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 211/323 (65%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D I+W MI+ Y+Q + REAL+ F+ M+ G+ + V+M +VLSAC LGALD G
Sbjct: 208 MPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H Y+ + I V +G+ LVD+YAKCG +D+++ VF+ + EKN++ W+S + GLA++
Sbjct: 268 RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF + L +F M + V PN VTF+SVL C+ G V+EG++ F SM + I P+++H
Sbjct: 328 GFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDH 387
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL ++AG LEDA+ +I+ + +A +W +LL ++++NLE+ +A +++ LE
Sbjct: 388 YGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELE 447
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+N G LL N+YA+ W V+ +R +MK G+ K+ PG S +E+ +V++F DKS
Sbjct: 448 TSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQ-PGCSVMEVNGEVHEFFVGDKS 506
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
HP +EI + + +L+LA Y
Sbjct: 507 HPKYNEIDAVWKDISRRLRLAGY 529
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 192/319 (60%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++++SW TMI + QN E L FN + G+ PDQ T VL C +G + L
Sbjct: 698 LSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLS 757
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH +M GF+ + I +AL+D+YAK G L+ S VF ++ + W +++ A H
Sbjct: 758 QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATH 817
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +A+ F+ M++ + P+ VTF +L+AC+H+GLVEEGR F +M+ Y I P ++H
Sbjct: 818 GYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDH 877
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL+ ++GLL+DA LI+ +P++ +WGALLG C+++++ ++ A L LE
Sbjct: 878 YSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELE 937
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + +L N+Y+ W + ++IR MK+ G+ R G S+IE K+++F D S
Sbjct: 938 PRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGL-VRASGYSYIEHGNKIHKFVVGDWS 996
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP S++I L ++ +++K
Sbjct: 997 HPESEKIQKKLKEIRKKMK 1015
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 49/254 (19%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDLGREI 63
+ + +MI + ++ ++ D ++ + +SG + PD T+ ++ AC LG + G ++
Sbjct: 79 LFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQV 138
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLD----------------RSLLV--------- 98
H ++ GFD D ++ + L+ +YA+ G LD R+ +V
Sbjct: 139 HGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDV 198
Query: 99 ------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
F + EK+ WN++I G A G + EAL +F M E V+ NGV+ ISVLSAC
Sbjct: 199 AFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSAC 258
Query: 153 THAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
T G +++GR R + +T T +VDL +K G ++ A+E+ +
Sbjct: 259 TQLGALDQGRWAHSYIERNKIKITVRLGTT--------LVDLYAKCGDMDKAMEVFWGME 310
Query: 206 FQPNAVIWGALLGG 219
+ N W + L G
Sbjct: 311 -EKNVYTWSSALNG 323
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 16/223 (7%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
G P++VT +++SAC H G + G IH VM+ G +V + +AL+++Y K G L S
Sbjct: 632 GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F L KNL WN++I +G A E LA F+ + ++P+ TF++VL C
Sbjct: 692 CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 751
Query: 156 GLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA----LELIRSSKFQPNA 210
G+V + L M CG++ + ++DL +K G LED+ LE+ P++
Sbjct: 752 GVVRLSQGIHGLIMFCGFNANTCIT--TALLDLYAKLGRLEDSSTVFLEIT-----SPDS 804
Query: 211 VIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+ W A+L H A I ELM+ L P++ + LL
Sbjct: 805 MAWTAMLAAYATHGYGRDA-IKHFELMVHYGLSPDHVTFTHLL 846
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 204/323 (63%), Gaps = 1/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW ++I QN F E L F +M + I P + ++++ ACAHL L LG+++
Sbjct: 303 RDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL 362
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + GFD +++I S+LVDMYAKCG++ + +F ++R +++ W ++I G A+HG A
Sbjct: 363 HGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F++M E ++PN V F++VL+AC+H GLV+E + F SMT + I P VEHY
Sbjct: 423 PDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAA 482
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ DLL +AG LE+A + I P IW LL C++H N+++A N ++ ++PNN
Sbjct: 483 VSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNN 542
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+G LL N+Y+ RW E K R +M+ +GI K P SWIE++ KVY F A D+SHP
Sbjct: 543 TGAYILLANIYSAARRWKEAAKWRASMRRIGIRK-TPACSWIEVKNKVYAFMAGDESHPC 601
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
++I ++ L E ++ YVP+
Sbjct: 602 YEKIREAMEVLVELMEKEGYVPD 624
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW T+I ++N + E L EM + + PD T+++VL A + G
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG 258
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++ G D D+Y+ S+L+DMYAKC + S VF L E++ WNSII G +
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F +M+ ++P +F S++ AC H + G++ +T +
Sbjct: 319 GLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFI 377
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A ++ + + + V W A++ GC LH
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 34/246 (13%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W ++I CY+ + ++L +F M SG+ PD +VL +CA L L+LG +H Y
Sbjct: 72 LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRS------------------------------- 95
++++G D D+Y G+AL++MY+K L+ S
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191
Query: 96 -LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+F + EK+L WN+II G A +G E L M M N++P+ T SVL
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
+ G + + + ++ ++D+ +K + D+ + + + + + W
Sbjct: 252 NVDISRG-KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF-TLLTERDGISWN 309
Query: 215 ALLGGC 220
+++ GC
Sbjct: 310 SIIAGC 315
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT MI + + Q +A++ F +M+ GI P+ V VL+AC+H G +D
Sbjct: 401 MRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVD-- 458
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRS 95
E Y + D + G +A+ D+ + G L+ +
Sbjct: 459 -EAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA 496
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
+Y+ L SL +F + W S+I HG H++L F M+ + P+
Sbjct: 49 IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108
Query: 145 FISVLSAC 152
F SVL +C
Sbjct: 109 FPSVLKSC 116
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 202/323 (62%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW ++I C+ Q + EA+D F M +SG+ + T+ +LS+C+H+G L LG
Sbjct: 327 MPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALG 386
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H Y+ + + +A++DMYAKCG+L ++ VFF + EKN WN II LA+H
Sbjct: 387 KQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALH 446
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ MF++M V P+ +TF +LSAC+H+GLV+ G+ F M + I+P+VEH
Sbjct: 447 GYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEH 506
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + GLL +A+ LI+ +P+ V+W ALLG C+ + NL I + +L+ L
Sbjct: 507 YACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELG 566
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL NMY+E RW ++ I + + GI K+C S+IE++ YQF DK
Sbjct: 567 RYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGI-KKCRAISFIEIDGCCYQFMVDDKR 625
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
H AS IYS L +L + LK A Y
Sbjct: 626 HGASTSIYSMLGQLMDHLKSAGY 648
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 33/251 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R ++SW +MI YS+ + EA+ F EM+ G+ PD T+ +LS G DLGR +
Sbjct: 198 RTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFV 257
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSL------------------------------- 92
HL+++ G +ID + +AL+DMYAKCG+L
Sbjct: 258 HLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLI 317
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
D +L F ++ KN+ WNSII G EA+ +F RM V N T +++LS+C
Sbjct: 318 DCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSC 377
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+H G + G++ S +IT ++D+ +K G L+ A+++ + NAV
Sbjct: 378 SHMGDLALGKQAH-SYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP-EKNAVS 435
Query: 213 WGALLGGCKLH 223
W ++G LH
Sbjct: 436 WNVIIGALALH 446
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 7/260 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + +I YS + ++L + M GI P+Q T+ VL ACA LG
Sbjct: 94 IPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLG 153
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++G + +A++++Y CG + + VF + E+ L WNS+I G +
Sbjct: 154 VCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKM 213
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G + EA+ MF M +EP+ T + +LS T G + GR L M G I V
Sbjct: 214 GRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVT 273
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--- 236
+ ++D+ +K G L+ A + + + V W ++ H ++ A N++
Sbjct: 274 N--ALMDMYAKCGNLKCA-KSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGK 330
Query: 237 MILEPNNSGYCTLLLNMYAE 256
++ N+ +C + +YAE
Sbjct: 331 NVVSWNSIIWCHVQEGLYAE 350
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 55/262 (20%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
SP T+ ++ C L L + +H ++ G V LV + L +
Sbjct: 33 SPTHQTLHYLIDQCISLKQL---KHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHK 89
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC----- 152
+F ++ + N F +N +I+G + ++L ++ RM+ + + PN T VL AC
Sbjct: 90 LFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSC 149
Query: 153 -----------------THA-------------GLVEEGRRRFLSMTCGYSITPEVEHYG 182
+HA GL+ RR F ++ + +
Sbjct: 150 YWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDIS-----ERTLVSWN 204
Query: 183 CMVDLLSKAGLLEDALELIRSSK---FQPNAVIWGALLGGCKLHRNLEIA-----HIAVN 234
M++ SK G E+A+ + R + +P+ LL H N ++ H+ V
Sbjct: 205 SMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVT 264
Query: 235 ELMILEPNNSGYCTLLLNMYAE 256
+ I +S L++MYA+
Sbjct: 265 GIEI----DSIVTNALMDMYAK 282
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 209/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD+ISW+++I+C+++ EAL F +M K S I PD V M +V+SA + LGAL+
Sbjct: 154 MPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALE 213
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG +H ++ +IG ++ V +GSAL+DMY++CG +DRS+ VF ++ +N+ W ++I GLA
Sbjct: 214 LGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLA 273
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EAL F M+ ++P+ + F+ VL AC+H GLVEEGRR F SM Y I P +
Sbjct: 274 VHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPAL 333
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AG++ +A + + + +PN+VIW LLG C H L +A A +
Sbjct: 334 EHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKE 393
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+P++ G LL N Y V W + +R +M+E I K PG S + +++ ++F + D
Sbjct: 394 LDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKE-PGLSLVHIDQVAHEFVSGD 452
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +EI L + + +KL Y P + +L
Sbjct: 453 NSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVL 485
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 15/204 (7%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE-IHLYVMQIGFDIDVYIGSALV 83
AL F+ M + + D T +L + L IH V+++GF ++Y+ +AL+
Sbjct: 82 ALALFSHMHRTNVPFDHFTFPLILKSSK------LNPHCIHTLVLKLGFHSNIYVQNALI 135
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE--NVEPN 141
+ Y GSL SL +F ++ ++L W+S+I A G EAL +F +M + ++ P+
Sbjct: 136 NSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPD 195
Query: 142 GVTFISVLSACTHAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
GV +SV+SA + G +E G F+S G ++T V ++D+ S+ G ++ +++
Sbjct: 196 GVVMLSVISAVSSLGALELGIWVHAFIS-RIGVNLT--VSLGSALIDMYSRCGDIDRSVK 252
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ + N V W AL+ G +H
Sbjct: 253 VFDEMPHR-NVVTWTALINGLAVH 275
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 203/323 (62%), Gaps = 1/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW ++I QN F E L F +M + I P + ++++ ACAHL L LG+++
Sbjct: 364 RDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL 423
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + GFD +++I S+LVDMYAKCG++ + +F ++R +++ W ++I G A+HG A
Sbjct: 424 HGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHA 483
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F++M E +EPN V F++VL+AC+HAGLV+E + F SMT + I P VEHY
Sbjct: 484 LDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAA 543
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ DLL +AG LE+A + I P +W LL C++H+N+++A N ++ ++P N
Sbjct: 544 VSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKN 603
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+G LL N+Y+ RW E K R +++ GI K P SWIE+ KVY F A D+SHP
Sbjct: 604 TGAYILLANIYSAARRWKEAAKWRASLRRTGIRK-TPACSWIEVRNKVYAFMAGDESHPC 662
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
++I ++ L E ++ YVP+
Sbjct: 663 YEKIREAMEVLMELMEKEGYVPD 685
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW T+I ++N + E L EM + + PD T+++VL A + G
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++ G D +VY+ S+L+DMYAKC + S VF L E++ WNSII G +
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F +M+ ++P +F S++ AC H + G++ +T +
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFI 438
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A ++ + + + V W A++ GC LH
Sbjct: 439 ASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALH 480
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W ++I CY+ + ++L +F M SG+ PD +VL ACA L L+LG +H Y
Sbjct: 74 LAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGY 133
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
++++G D D+Y G+AL++MY+K L +S
Sbjct: 134 IIRVGLDFDLYTGNALMNMYSKLRFLKKS 162
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT MI + + +A++ F +MK GI P+ V VL+AC+H G +D
Sbjct: 462 MRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVD-- 519
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRS 95
E Y + D + G +A+ D+ + G L+ +
Sbjct: 520 -EAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA 557
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
S+D +F + EK+L WN+II G A +G E L M M N++P+ T SVL
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+ +G + + + EV ++D+ +K + D+ + + + +
Sbjct: 309 LIAENVDISKG-KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVF-TLLTERDG 366
Query: 211 VIWGALLGGC 220
+ W +++ GC
Sbjct: 367 ISWNSIIAGC 376
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
+Y+ L SL +F L W S+I HG H++L F M+ + P+
Sbjct: 51 IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110
Query: 145 FISVLSAC 152
F SVL AC
Sbjct: 111 FPSVLKAC 118
>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 209/324 (64%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++++ WT ++T Y N + ++AL F +M G P+Q T + L AC L ALD G+E
Sbjct: 265 TKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKE 324
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++G + DV++G++LV MY +CG+++ ++ VF + EK++ WNSII G A HGF
Sbjct: 325 IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGF 384
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
AL F++MI V+PN +TF +LSAC+ +G++ +GR F ++ S +HY
Sbjct: 385 GLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYA 444
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L + G L++A EL+R + N++IW ALL C++H NLE+A A ++ LEPN
Sbjct: 445 CMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPN 504
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
S LL N+YA RWA+V+++RV MK+ G+ K+ PGSSW+ + K ++F ++D+SHP
Sbjct: 505 CSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQ-PGSSWVVLRGKKHEFLSADRSHP 563
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S+ IY L L ++LK YVP+
Sbjct: 564 LSERIYEKLDWLGKKLKEFGYVPD 587
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISWT+MI N + EAL F +M SG+ P T A VLSACA+ +LG
Sbjct: 162 MPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLG 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +V+++G +I +L+ YA C ++ + +F + KN+ W +++ +
Sbjct: 222 VQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWN 281
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL +F M PN TF L AC +++G + +M + +V
Sbjct: 282 NKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKG-KEIHTMAIKLGLETDVFV 340
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V + ++ G + A+ + R+ + + V W +++ G H A I N+++
Sbjct: 341 GNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRG 399
Query: 239 LEPNNSGYCTLL 250
++PN + LL
Sbjct: 400 VDPNEITFTGLL 411
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW +MI A F+EM + ++ T+++ G ++L
Sbjct: 69 MSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNV----ISWTTMVNGYLKFGRVELA 124
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + L M + DV +A+V Y + G ++ + +F ++ +++ W S+I GL ++
Sbjct: 125 QRLFLD-MHVK---DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLN 180
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +F +M+ VEP TF VLSAC +A + G + V
Sbjct: 181 GKSEEALFVFKKMLRSGVEPTWSTFACVLSACANA----------VEFNLGVQVHGHVVK 230
Query: 181 YGC---------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
GC ++ + +E A ++ + N V W ALL
Sbjct: 231 LGCFFHEFISVSLITFYANCMKIEHAHKIFNET-LTKNVVKWTALL 275
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
++++ + ++ Y + L +L +F ++ +++ WNS+I+G G A +FD M
Sbjct: 42 NLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMP 101
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
+NV +++ ++++ G VE +R FL M +V + MV + G +
Sbjct: 102 EKNV----ISWTTMVNGYLKFGRVELAQRLFLDMH-----VKDVAAWNAMVHGYFENGRV 152
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
E+ + L + + + W +++GG L+ E A +++ +EP S + +L
Sbjct: 153 EEGVRLFEEMPVR-DVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVL 209
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 192/297 (64%), Gaps = 1/297 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++SW MIT YS +F E L F +M+++G+ PD T+ +VLSACAH+GAL G
Sbjct: 232 PVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGE 291
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y+ + G ID ++ +ALVDMY+KCGS++++L VF K++ WNSII GL+ HG
Sbjct: 292 WVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHG 351
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
AL +F M+ E +PN VTF+ VLSAC+ AGL++EGR F M + I P +EHY
Sbjct: 352 SGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHY 411
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL + GLLE+A EL++ + +V+W +LLG C+ H N+E+A +L+ L P
Sbjct: 412 GCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSP 471
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
S L NMYA + RW +V ++R M+ G+ K PG S IE++ VY+F A +
Sbjct: 472 QESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKD-PGCSMIEVDGTVYEFLAGE 527
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 12/223 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W T+I Y+ + AL F++M ++ + PD+ T L +C ++ G
Sbjct: 68 IPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEG 127
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH +V++ G D++I + L+ +YA CG ++ + + ++ E+++ WN+++ A
Sbjct: 128 RQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAER 187
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +FD M NVE ++ ++S GL+EE RR F G + V
Sbjct: 188 GLMELACHLFDEMTERNVE----SWNFMISGYVGVGLLEEARRVF-----GETPVKNVVS 238
Query: 181 YGCMVDLLSKAGLLEDAL---ELIRSSKFQPNAVIWGALLGGC 220
+ M+ S AG + L E ++ + +P+ ++L C
Sbjct: 239 WNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSAC 281
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 61 REIHLYVMQIGFDIDVYIGSAL---VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+ H ++++ G + S L V + ++ + +F ++ N + WN+II
Sbjct: 24 HQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAY 83
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSI 174
A AL +F +M++ +V P+ TF L +C VEEGR+ L G +
Sbjct: 84 ANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDL 143
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ ++ L + G +EDA L+ + + V W ALL
Sbjct: 144 FIQ----NTLIHLYASCGCIEDARHLL-DRMLERDVVSWNALL 181
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 214/342 (62%), Gaps = 16/342 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-------GISPDQVTMATVLSACAH 53
M +D++ W MI Y+Q+ EAL F +M + P+++T+ VLS+C
Sbjct: 209 MGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQ 268
Query: 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
+GAL+ G+ +H YV G ++V +G+ALVDMY KCGSL+ + VF + K++ WNS+
Sbjct: 269 VGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSM 328
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G +HGF+ EAL +F M V+P+ +TF++VL+AC HAGLV +G F SM GY
Sbjct: 329 IMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYG 388
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL----EIA 229
+ P+VEHYGCMV+LL +AG +++A +L+RS + +P+ V+WG LL C++H N+ EIA
Sbjct: 389 MEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIA 448
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289
I V+ + +SG LL NMYA W V K+R MK G+EK PG S IE++
Sbjct: 449 EILVSNGLA----SSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKE-PGCSSIEVKN 503
Query: 290 KVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+V++F A D+ HP S +IYS L K++ LK Y P+ +A+L
Sbjct: 504 RVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVL 545
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 62/269 (23%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++ WT +I ++ F AL +++M I P+ T++++L AC L R
Sbjct: 82 PNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPAR 137
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-----------DRSL-------------- 96
+H + ++ G +Y+ + LVD YA+ G + +RSL
Sbjct: 138 AVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHG 197
Query: 97 ------LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR-------MIYENVEPNGV 143
++F + K++ CWN +I+G A HG +EAL F + V PN +
Sbjct: 198 MLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEI 257
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLL 194
T ++VLS+C G +E CG + VE+ G +VD+ K G L
Sbjct: 258 TVVAVLSSCGQVGALE----------CGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSL 307
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLH 223
EDA ++ + + + V W +++ G +H
Sbjct: 308 EDARKVFDVMEGK-DVVAWNSMIMGYGIH 335
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH +++ G + L YA G L S+ +F + N+F W II A
Sbjct: 41 QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-------HAGLVEEGRRRFLSMTCG--- 171
H AL+ + +M+ ++PN T S+L ACT H+ ++ G L ++ G
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVD 160
Query: 172 --------------YSITPE--VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ PE + Y M+ +K G+L +A L + + V W
Sbjct: 161 AYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMK-DVVCWNV 219
Query: 216 LLGGCKLH 223
++ G H
Sbjct: 220 MIDGYAQH 227
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/299 (45%), Positives = 206/299 (68%), Gaps = 4/299 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT +IT Y +++ +AL AF +M+ +G+ P+ VTM LSACA GAL++G
Sbjct: 170 MPHRDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMG 229
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH ++ + G++ DV +G++L+DMY KCG ++ L+VF ++EKN+F WNS+I+GLA+
Sbjct: 230 VWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALA 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPEVE 179
EA+ F RM E ++ + VT I+VL AC+H+G+V+ GR+ F S+ G Y P V+
Sbjct: 290 RSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQIFGSLMNGKYEFFPGVK 349
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C++DLL++AG+L++A+E++ F+PN V+WGA L GC+ H +LE++ A +L+ L
Sbjct: 350 HYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAGCRAHGDLELSEFAARKLVEL 409
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME--RKVYQFAA 296
EP N Y LL N+YAE+ RW++V K+R MKE G+ K G S IE+E +VY+ A
Sbjct: 410 EPGNGAYYVLLSNIYAEMGRWSDVEKVRRLMKEGGLTKDL-GCSSIELEPQERVYELLA 467
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 6/218 (2%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
++I +S N + M ++ I P+ T +L + A L G+ IH +V++
Sbjct: 78 NSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCIHTHVVK 137
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+G D+Y+ ++L+++YA CG + + VF ++ +++ W +I G +AL
Sbjct: 138 LGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIA 197
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDL 187
F++M Y V PN VT ++ LSAC G +E G F+ + G+ +V ++D+
Sbjct: 198 FEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRS-GWEF--DVILGTSLIDM 254
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
K G +E+ L + RS K + N W +L+ G L R+
Sbjct: 255 YGKCGRIEEGLVVFRSMK-EKNVFTWNSLIKGLALARS 291
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 199/313 (63%), Gaps = 2/313 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP ++++SW MI+ Y N +F +AL F+ M N PDQ T+ ++LSACAHLG+L+
Sbjct: 260 MPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEH 319
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ I+ Y+ + + + +G+AL+DM+AKCG ++ + VF + ++ + W +++ GLAV
Sbjct: 320 GKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAV 379
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G EA+ +FD+M E +P+ V FI+VLSACTH GLVEEG+R F M + I P +E
Sbjct: 380 NGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIE 439
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE+A+ +PNAVIW LL CK+H N ++ ++M
Sbjct: 440 HYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQ 499
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+N Y TL+ N+ A RW +V RVAM++ +EK PG S I++ +V++F A D
Sbjct: 500 EPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEK-VPGCSSIQVGNRVHEFLAKDT 558
Query: 300 SHPASDEIYSSLS 312
H EIY +LS
Sbjct: 559 RHVQRKEIYRALS 571
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 60/260 (23%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW +MI+ Y + + A+ ++M I VT +V+ + G ++L
Sbjct: 136 MPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI----VTWNSVVCGLSKAGNMELA 191
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H Q+ +V S ++ Y + G + + +F+++ EK + W ++I G A +
Sbjct: 192 ---HSVFEQMPLRNEVSWNS-MISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATN 247
Query: 121 GFAHEALAMFDRMIYENV--------------------------------EPNGVTFISV 148
G A +F+ M +NV P+ T IS+
Sbjct: 248 GDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISI 307
Query: 149 LSACTHAGLVEEGR---------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
LSAC H G +E G+ + LS+ G ++D+ +K G +E+A E
Sbjct: 308 LSACAHLGSLEHGKWINSYIKKNKLHLSIPLG----------NALIDMFAKCGDVENAKE 357
Query: 200 LIRSSKFQPNAVIWGALLGG 219
+ + + W ++ G
Sbjct: 358 VFHHMS-KRCIITWTTMVSG 376
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 16/230 (6%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
+EAL ++ MK + + T +L AL+ GR IH ++++GF V++ ++L
Sbjct: 56 KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSL 115
Query: 83 VDMYAKCG-SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
+ YA C +L + VF ++ E+++ WNS+I G A+ + D+M N+
Sbjct: 116 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI--- 172
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
VT+ SV+ + AG +E F M ++ + M+ + G + A +
Sbjct: 173 -VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVS-----WNSMISGYVRIGDVRAAQSIF 226
Query: 202 RSSKFQPNAVIWGALLGGCKLHRNLEIA-----HIAVNELMILEPNNSGY 246
+ V W A++ G + +L+ A H+ V ++ SGY
Sbjct: 227 YQMP-EKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGY 275
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 142/340 (41%), Positives = 210/340 (61%), Gaps = 10/340 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI +Q + ++AL F+EM+ +G+ DQV + LSACA LG L LG
Sbjct: 125 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLG 184
Query: 61 REIHLYV---MQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
IH Y+ + G + V + ++L+ MYA CG +D++ VF +++++ W S+I G
Sbjct: 185 TWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITG 244
Query: 117 LAVHGFAHEALAMFD---RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
A G A EAL +F R+ + P+G+TFI VL AC+HAG V++GR F M +
Sbjct: 245 FAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWG 304
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA-HIA 232
I P +EHYGCMVDLLS+AG L++A LI S +PN +WGALLGGC++H+N E+A H+A
Sbjct: 305 IVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVA 364
Query: 233 VNELMILEPNN-SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKV 291
+ L+P+ +GY LL N+YA RW +V +R M E+G+ K G SW+++ V
Sbjct: 365 QKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKP-AGRSWVQINGVV 423
Query: 292 YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ F A D +H + +Y LSK+ Q KL Y ++ +L
Sbjct: 424 HDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEVL 463
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 34/184 (18%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
MI +SQ++ + ++ +N M + P++ T + ++ CA L G ++H V+ G
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 72 FDIDVYIGSALVDMYA----------------------------------KCGSLDRSLL 97
+ +V++ ++LV++YA +CG +D +
Sbjct: 61 YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F ++ E+N+ W ++I G A G +AL +F M V+ + V ++ LSAC G
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180
Query: 158 VEEG 161
++ G
Sbjct: 181 LKLG 184
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 215/334 (64%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M+T ++QN + +EAL+ F+ M+ SGI D+VT+A +SACA LGA
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 61 REIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ G+ V IGSAL+DMY+KCG+++ ++ VF + KN+F ++S+I GLA
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLA 360
Query: 119 VHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
HG A EAL +F M+ + ++PN VTF+ L AC+H+GLV++GR+ F SM + + P
Sbjct: 361 THGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPT 420
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+HY CMVDLL + G L++ALELI++ +P+ +WGALLG C++H N EIA IA L
Sbjct: 421 RDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLF 480
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSW-IEMERKVYQFAA 296
LEP+ G LL N+YA W V ++R +KE G+ K+ P SW ++ ++++F
Sbjct: 481 ELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL-KKTPAVSWVVDKNGQMHKFFP 539
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
+ +HP S++I L +L E+L + Y P+L ++
Sbjct: 540 GNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSV 573
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 125/284 (44%), Gaps = 38/284 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ WT +I Y+ +F EA+ + M+ I+P T + +L AC + L+LGR+
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H ++ VY+G+ ++DMY KC S+D + VF ++ E+++ W +I A
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231
Query: 119 ---------------------VHGFA-----HEALAMFDRMIYENVEPNGVTFISVLSAC 152
V GFA EAL FDRM + + VT +SAC
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 291
Query: 153 THAGLVEEGRRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G + R ++ GYS + V ++D+ SK G +E+A+ + S N
Sbjct: 292 AQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVF 350
Query: 212 IWGALLGGCKLH----RNLEIAHIAVNELMILEPNNSGYCTLLL 251
+ +++ G H L + H V + I +PN + L+
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEI-KPNTVTFVGALM 393
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-SLDR-SLLVFF 100
++ + L C +L + ++IH +V++ G D YI + L+ K G +D + V
Sbjct: 51 SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
++ +N F W ++I G A+ G EA+AM+ M E + P TF ++L AC +
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 161 GRR 163
GR+
Sbjct: 168 GRQ 170
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 142/340 (41%), Positives = 210/340 (61%), Gaps = 10/340 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI +Q + ++AL F+EM+ +G+ DQV + LSACA LG L LG
Sbjct: 211 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLG 270
Query: 61 REIHLYV---MQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
IH Y+ + G + V + ++L+ MYA CG +D++ VF +++++ W S+I G
Sbjct: 271 TWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITG 330
Query: 117 LAVHGFAHEALAMFD---RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
A G A EAL +F R+ + P+G+TFI VL AC+HAG V++GR F M +
Sbjct: 331 FAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWG 390
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA-HIA 232
I P +EHYGCMVDLLS+AG L++A LI S +PN +WGALLGGC++H+N E+A H+A
Sbjct: 391 IVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVA 450
Query: 233 VNELMILEPNN-SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKV 291
+ L+P+ +GY LL N+YA RW +V +R M E+G+ K G SW+++ V
Sbjct: 451 QKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPA-GRSWVQINGVV 509
Query: 292 YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ F A D +H + +Y LSK+ Q KL Y ++ +L
Sbjct: 510 HDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEVL 549
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI +SQ++ + ++ +N M + P++ T + ++ CA L G ++H V+
Sbjct: 84 WNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVV 143
Query: 69 QIGFDIDVYIGSALVDMYA----------------------------------KCGSLDR 94
G+ +V++ ++LV++YA +CG +D
Sbjct: 144 ANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDG 203
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F ++ E+N+ W ++I G A G +AL +F M V+ + V ++ LSAC
Sbjct: 204 ARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAE 263
Query: 155 AGLVEEG 161
G ++ G
Sbjct: 264 LGDLKLG 270
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 18/238 (7%)
Query: 35 SGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDR 94
+G+ Q ++L C + L ++IH ++ GF ++ L+ Y G+L
Sbjct: 12 TGLRALQQHFFSLLQTCDTIKKL---KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN 68
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ VF ++ + WN +I G + H+ + +++RM+ EPN T+ ++ C
Sbjct: 69 AHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCAR 128
Query: 155 AGLVEEGRRRFLSMTC-GYSITPEVEHYGCMVDLLSKAGLLEDALELIR--SSKFQPNAV 211
+ L+ EG + + GY V +V+L + AG + + R N V
Sbjct: 129 SRLLREGEQVHGRVVANGYCTNVFVR--TSLVNLYAIAGGYDGVRKARRVFDEIVDRNIV 186
Query: 212 IWGALLGGCKLHRNLEIAHIAVNEL----------MILEPNNSGYCTLLLNMYAEVSR 259
W +LL G +++ A +E+ MI G C L+++ E+ R
Sbjct: 187 SWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRR 244
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 207/329 (62%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
R +SW MI Y+QN + EAL+ F+EMK+ G+ PD TM +V+ A A L +
Sbjct: 412 GRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKW 471
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D ++++ +ALVDMY+KCG++ + +F + ++++ WN++I+G HG
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGL 531
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
AL +FD+M VEPN +T++SV+SAC+H+GLV+EG R F SM Y + P ++HYG
Sbjct: 532 GRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYG 591
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
MVDLL +AG +++A + I + P ++GA G CK+H+N+E+ A +L L P+
Sbjct: 592 AMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPD 651
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
GY LL N+YA S+W++V ++R M++ G+ K+ PG S +E+ +V+ F + +HP
Sbjct: 652 EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGL-KKTPGCSVVELRNEVHSFYSGSTTHP 710
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
S IY+ L +L ++K A YVP+ +L
Sbjct: 711 QSKRIYAFLEELVYEIKAAGYVPDTNLIL 739
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 105/162 (64%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T+I +SQN ++AL+ M++ G PD +T+ TVL A A +G L +G
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y ++ GF V I +AL DMY+KCGS++ + L+F + +K + WNS+++G +
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G +A+A+F++M+ E ++P GVT + L AC G +E G+
Sbjct: 328 GEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGK 369
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW +M+ Y QN + +A+ F +M GI P VT+ L ACA LG L+ G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +V Q+ D+ + ++L+ MY+KC +D + +F L + WN++I G A +
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G EAL F M ++P+ T +SV+ A + + + +C + +
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC---LDKNI 485
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM- 237
+VD+ SK G + A +L + + + W A++ G H L A + + + M
Sbjct: 486 FVTTALVDMYSKCGAIHMARKLFDMISDR-HVITWNAMIDGYGTH-GLGRAALDLFDKMK 543
Query: 238 --ILEPNNSGYCTLL 250
+EPN+ Y +++
Sbjct: 544 KGAVEPNDITYLSVI 558
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 11/251 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ Y++N AL M+ + P +L C L G+EIH ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
F +V+ + +V+MYAKC +D + +F ++ E++L WN+II G + +GFA +AL
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCM 184
+ RM E P+ +T ++VL A GL+ G+ GY+I V +
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS-----IHGYAIRAGFAKLVNISTAL 289
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
D+ SK G +E A LI Q V W +++ G + E A IAV E M+ E +
Sbjct: 290 ADMYSKCGSVETA-RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA-IAVFEKMLEEGIDP 347
Query: 245 GYCTLLLNMYA 255
T++ ++A
Sbjct: 348 TGVTIMEALHA 358
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
A +L C + L +I V++ G + + LV +++K GS++ + VF + +
Sbjct: 53 AVLLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDD 109
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
K ++++++G A + ALA RM Y++V+P F +L C ++ G+
Sbjct: 110 KLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEI 169
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ S V +V++ +K ++DA ++ + + V W ++ G
Sbjct: 170 HGQLITN-SFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAG 222
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 210/330 (63%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW TMI Y+ ++EAL F EM SG +P+ VTM ++L ACA LGA+D GR I
Sbjct: 299 KDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWI 358
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G + ++L+DMYAKCG ++ + VF + + L N++I G A+HG
Sbjct: 359 HVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHG 418
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A+ A +F RM +EP+ +TF+ +LSAC+H+G+++ GRR F SMT Y ITP++EHY
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHY 478
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL GL ++A E+I + +P+ VIW +LL CK+H N+E+ +L+ +EP
Sbjct: 479 GCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEP 538
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N G LL N+YA RW EV IR + + G+ K+ PG S IE++ V++F DK H
Sbjct: 539 ENPGSYVLLSNIYATAGRWNEVANIRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGDKFH 597
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 598 PRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 17/230 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW +I+ Y+ +EALD F EM + + PD+ TM TV+SACA G++ LG
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLG 254
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ G ++ I +AL+D+Y+KCG ++ + +F L K++ WN++I G
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC G ++ GR +R +T S
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASS 374
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP----NAVIWGALLGG 219
+ ++D+ +K G +E A ++ S + NA+I+G + G
Sbjct: 375 LRTS------LIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHG 418
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + A+ + M + G+ P+ T +L +CA L G++IH
Sbjct: 67 NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIH 126
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGS-------------------------------LD 93
+V+++G+++D+Y+ ++L+ MY K G ++
Sbjct: 127 GHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIE 186
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ K++ WN+II G A G EAL +F M+ NV+P+ T ++V+SAC
Sbjct: 187 SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACA 246
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G ++ G R+ S + + ++ ++DL SK G +E A L + + + W
Sbjct: 247 QSGSIQLG-RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS-NKDVISW 304
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
++GG H NL + + + M+ N T+L + A + RW V
Sbjct: 305 NTMIGG-YTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R + + MI ++ + + A D F+ M+ +GI PD +T +LSAC+H G LDLG
Sbjct: 399 MHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 458
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I RS+ +K+ K L + +I+ L
Sbjct: 459 RRIF-----------------------------RSMTQNYKITPK-LEHYGCMIDLLGHL 488
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
G EA M + M +EP+GV + S+L AC G VE G
Sbjct: 489 GLFKEAEEMINTM---TMEPDGVIWCSLLKACKMHGNVELG 526
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 19/261 (7%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD---MYAKCGSLDRSLLVFFKL 102
++L C L +L R IH +++ G Y S L++ + L ++ VF +
Sbjct: 7 SLLHNCKTLQSL---RIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+E NL WN++ G A+ A+ ++ MI + PN TF +L +C + +EG+
Sbjct: 64 QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123
Query: 163 R-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
+ + GY + V + ++ + K G +DA ++ S + + V + AL+ G
Sbjct: 124 QIHGHVLKLGYELDLYV--HTSLISMYVKNGRWKDAHKVFDGSSHR-DVVSYTALITGYA 180
Query: 222 LHRNLEIAH-----IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE---L 273
+E A I V +++ SGY N A + + E+ K V E +
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEA-LDLFKEMMKTNVKPDESTMV 239
Query: 274 GIEKRCPGSSWIEMERKVYQF 294
+ C S I++ R+V+ +
Sbjct: 240 TVVSACAQSGSIQLGRQVHSW 260
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 213/334 (63%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SWT++I+ + Q EAL EM+N+G D V +A++L+ACA+LGALD G
Sbjct: 180 MPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQG 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR--EKNLFCWNSIIEGLA 118
R +H YV+ G D+D IG ALV+MY KCG ++ +L VF KL+ +K+++ W ++I+G A
Sbjct: 240 RWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFA 299
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG EAL F+RM E + PN +TF +VL AC++ GLVEEG+ F SM C Y++ P +
Sbjct: 300 IHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSI 359
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL ++G L++A ELI+ +P+AVIWGALL C +HR+ + L+
Sbjct: 360 EHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVE 419
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
++ ++SG L + A +W E ++R+ MK LG+ PG S + + V++F A
Sbjct: 420 VDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPI-SPGKSSVTLNGIVHEFLAGH 478
Query: 299 KSHPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
+ HP ++I L ++ E+L+ Y P + +L
Sbjct: 479 QDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLL 512
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 37/249 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I YS + + A ++ +M +S + + T +L AC +L A+ ++H V+
Sbjct: 56 WNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVI 115
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLD--RSLL----------------------------- 97
++GF DV+ +AL+ +YA CG + R L
Sbjct: 116 KLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYG 175
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + KN+ W S+I GL G + EAL++ M E +GV S+L+AC + G
Sbjct: 176 VFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGA 235
Query: 158 VEEGR-RRFLSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKF-QPNAVIWG 214
+++GR F + G + + GC +V++ K G +E+AL + K Q + IW
Sbjct: 236 LDQGRWLHFYVLNNGVDVDRVI---GCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWT 292
Query: 215 ALLGGCKLH 223
A++ G +H
Sbjct: 293 AMIDGFAIH 301
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 216/332 (65%), Gaps = 1/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW+T+I Y Q F EALD F++M G P++ T+ + L+AC++L ALD G
Sbjct: 207 MRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN-LFCWNSIIEGLAV 119
+ IH Y+ + ++ + ++++DMYAKCG ++ + VFF+ + K ++ WN++I G A+
Sbjct: 267 KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAM 326
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +EA+ +F++M E + PN VTFI++L+AC+H +VEEG+ F M Y+ITPE+E
Sbjct: 327 HGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIE 386
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLLS++GLL++A ++I S P+ IWGALL C++++++E + + +
Sbjct: 387 HYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGM 446
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PN+ G LL N+Y+ RW E +R + K+ PG S IE++ +QF D+
Sbjct: 447 DPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQ 506
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S EIYS L ++ +LK A YVPEL +L
Sbjct: 507 SHPQSREIYSFLDEMTTKLKSAGYVPELGELL 538
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 131/286 (45%), Gaps = 38/286 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQF-REALDAFNEM-KNSGISPDQVTMATVLSACAHLGALD 58
+P D+ + TMI +S + +L F + ++ G+ P++ + SAC + +
Sbjct: 73 IPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQ 132
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-----------SLDRSLL---------- 97
G ++ ++ +++G + +V++ +AL+ MY K G ++DR L
Sbjct: 133 EGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYV 192
Query: 98 ----------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
+F +RE+++ W++II G G EAL F +M+ +PN T +S
Sbjct: 193 GSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVS 252
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L+AC++ +++G+ + G I ++D+ +K G +E A + K +
Sbjct: 253 ALAACSNLVALDQGKWIHAYIGKG-EIKMNERLLASIIDMYAKCGEIESASRVFFEHKVK 311
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
+W A++GG +H + I V E M +E PN + LL
Sbjct: 312 QKVWLWNAMIGGFAMH-GMPNEAINVFEQMKVEKISPNKVTFIALL 356
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 203/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW +++ Y QN ++ EAL F +M + + P V ++V+ ACAHL L LG+++
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ GF +++I SALVDMY+KCG++ + +F ++ + W +II G A+HG
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
HEA+++F+ M + V+PN V F++VL+AC+H GLV+E F SMT Y + E+EHY
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ DLL +AG LE+A I +P +W LL C +H+NLE+A ++ ++ N
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ NMYA RW E+ K+R+ M++ G+ K+ P SWIEM+ K + F + D+SHP+
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK-PACSWIEMKNKTHGFVSGDRSHPS 604
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
D+I L + EQ++ YV + +L
Sbjct: 605 MDKINEFLKAVMEQMEKEGYVADTSGVL 632
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++S+ T+I Y+Q+ + +AL EM + + PD T+++VL + + G
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH YV++ G D DVYIGS+LVDMYAK ++ S VF +L ++ WNS++ G +
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EAL +F +M+ V+P V F SV+ AC H + G++ + G +
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSNIFI 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ SK G ++ A ++ + V W A++ G LH
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVL-DEVSWTAIIMGHALH 422
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 38/250 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+++W ++I C++ F +AL +F EM+ SG PD +VL +C + L G +H
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 66 YVMQIGFDIDVYIGSALVDMYAKC---GS------------------------------- 91
+++++G D D+Y G+AL++MYAK GS
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 92 --LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+D VF + K++ +N+II G A G +AL M M +++P+ T SVL
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
+ V +G + I +V +VD+ +K+ +ED+ E + S + +
Sbjct: 250 PIFSEYVDVIKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS-ERVFSRLYCRD 307
Query: 210 AVIWGALLGG 219
+ W +L+ G
Sbjct: 308 GISWNSLVAG 317
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SWT +I ++ + EA+ F EMK G+ P+QV VL+AC+H+G +D
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
+ ++ G + ++ +A+ D+ + G L+ + K+ E W++++ +
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523
Query: 119 VH 120
VH
Sbjct: 524 VH 525
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 140/329 (42%), Positives = 212/329 (64%), Gaps = 5/329 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SWTTMI+ Q F EALD F+ M G+SP++ T+A+ L+ACA+L ALD G
Sbjct: 194 MPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQG 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF---KLREKNLFCWNSIIEGL 117
R +H+Y+ + ++ + + L+DMYAKCG L+ + +F +L+ K ++ WN++I G
Sbjct: 254 RWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRK-VWPWNAMIGGF 312
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
AVHG + EA+ +F++M E V PN VTF+++L+AC+H VEEGR F SM Y + PE
Sbjct: 313 AVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPE 372
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EHYGC+VDLL +AG L++A E+I S P+ IWGALL CK+H++ E+ +
Sbjct: 373 LEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVK 432
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+PN+ G LL N+Y+ W E +R + E G +K+ PG S IE+ +QF
Sbjct: 433 ELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESG-KKKTPGCSSIELNGMFHQFLVG 491
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPE 326
D+SHP + ++Y L ++ +LK+A Y+PE
Sbjct: 492 DRSHPQTKQLYLFLDEMITKLKIAGYIPE 520
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 45/290 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN----SGISPDQVTMATVLSACAH-LG 55
P D+ + T+I + + + D+F + ++ + P+Q + A C +G
Sbjct: 60 FPQPDLFLYNTIIKVLAFSTT--SSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVG 117
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMY----------------------------- 86
L+ G ++ ++ +++G + ++++ +AL+ MY
Sbjct: 118 VLE-GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLS 176
Query: 87 --AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
A+ G +D + +F ++ EK++ W ++I G G+ EAL +F M+ + + PN T
Sbjct: 177 GYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYT 236
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
S L+AC + +++GR + + +I ++D+ +K G LE A +L S+
Sbjct: 237 LASSLAACANLVALDQGRWMHVYIKKN-NIQMNERLLAGLIDMYAKCGELEFASKLFNSN 295
Query: 205 -KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
+ + W A++GG +H + A I V E M +E PN + LL
Sbjct: 296 PRLKRKVWPWNAMIGGFAVHGKSKEA-IEVFEQMKIEKVSPNKVTFVALL 344
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW+ MI Y +N EA + F+ MK + + PD VT +L+AC HLGALDLG
Sbjct: 425 MSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLG 484
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EI+ ++ + +G+AL++M K GS++R+ +F + ++++ WN +I G ++H
Sbjct: 485 MEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLH 544
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +FDRM+ E PN VTF+ VLSAC+ AG VEEGRR F + G I P +E
Sbjct: 545 GNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMEL 604
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A LI +PN+ IW LL C+++ NL++A A ++ E
Sbjct: 605 YGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSE 664
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + L +MYA W V K+R M+ G+ K G +WIE+E K++ F D+S
Sbjct: 665 PYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKE-QGCTWIEVEGKLHTFVVEDRS 723
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY+ L++L +K Y+P + +L
Sbjct: 724 HPQAGEIYAELARLMTAIKREGYIPVTQNVL 754
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 2/225 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT MI Y++N +A F M+ GI PD++T +++ACA L L
Sbjct: 324 MKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLA 383
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH V++ GF D+ + +ALV MYAKCG++ + VF + +++ W+++I +
Sbjct: 384 REIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVEN 443
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA F M NVEP+ VT+I++L+AC H G ++ G + + + +
Sbjct: 444 GCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIY-TQAIKADLVSHIPV 502
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
++++ K G +E A I + Q + V W ++GG LH N
Sbjct: 503 GNALINMNVKHGSIERA-RYIFENMVQRDVVTWNVMIGGYSLHGN 546
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 149/318 (46%), Gaps = 40/318 (12%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +++W +I Y+Q +EA F +M + + P +T VL AC+ L LG+E
Sbjct: 125 KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEF 184
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++GF D IG+ALV MY K GS+D + VF L ++++ +N +I G A G
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACT-----------HA-----GLVEEGRRRF-- 165
+A +F RM E +PN ++F+S+L C+ HA GLV++ R
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATAL 304
Query: 166 --LSMTCGYSI-----------TPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPN 209
+ M CG SI +V + M+ ++ +EDA L ++ QP+
Sbjct: 305 IRMYMGCG-SIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPD 363
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269
+ + ++ C +L +A ++++ +G+ T LL A V +A+ I+ A
Sbjct: 364 RITYIHIINACASSADLSLAREIHSQVV-----RAGFGTDLLVDTALVHMYAKCGAIKDA 418
Query: 270 MKELGIEKRCPGSSWIEM 287
+ R SW M
Sbjct: 419 RQVFDAMSRRDVVSWSAM 436
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 8/218 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ ++ MI Y+++ +A F M+ G P++++ ++L C+ AL G+ +
Sbjct: 226 RDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAV 285
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H M G DV + +AL+ MY CGS++ + VF K++ +++ W +I G A +
Sbjct: 286 HAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNI 345
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAG---LVEEGRRRFLSMTCGYSITPEVEH 180
+A +F M E ++P+ +T+I +++AC + L E + + G + +
Sbjct: 346 EDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDT-- 403
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
+V + +K G ++DA ++ + + + V W A++G
Sbjct: 404 --ALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIG 438
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 39/232 (16%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
A D + + D T + C L LG+++ +++Q G +++Y + L+
Sbjct: 45 ANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIK 104
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
+++ CG++ + F + K + WN+II G A G EA A+F +M+ E +EP+ +T
Sbjct: 105 LHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIIT 164
Query: 145 FISVLSACT-----------HAGLVEEGRRRFLS-MTCGYSITP---------------- 176
F+ VL AC+ HA +++ G F+S G ++
Sbjct: 165 FLIVLDACSSPAGLKLGKEFHAQVIKVG---FVSDFRIGTALVSMYVKGGSMDGARQVFD 221
Query: 177 -----EVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
+V + M+ +K+G E A +L ++ F+PN + + ++L GC
Sbjct: 222 GLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC 273
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + +ISW M+ Y+ N+ EA++ F M+ GI PD VT+ATVL +C + AL LG
Sbjct: 252 MRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG 311
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + + + + +AL+DMYA CG L + VF + +++ W SII H
Sbjct: 312 KRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRH 371
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F++M + +EP+ + F+++L+AC+HAGL++ G+ F SMT + I P++EH
Sbjct: 372 GHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEH 431
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG + +A + I +PN +WGALLG C++H N++I +A + L+ L
Sbjct: 432 YACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLA 491
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +GY LL N+YA RWA+V+ +R M+ GI K+ PG S E+ +V+ F D S
Sbjct: 492 PKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGI-KKLPGVSNAELGDRVHTFHIGDTS 550
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S IY LS+L +++ Y PE+EA L
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATL 581
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 19/230 (8%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS--PDQVTMATVLSACAHLGALDL 59
P R + + ++ + R+AL F M+ G + PD T L +CA L L
Sbjct: 81 PDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVL 140
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH ++G D +V++ + + MYA+CG D + +F +++ +++ WN++I G A
Sbjct: 141 GRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAH 200
Query: 120 HGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A+ +F ++ + +P+ T S+L + G+ R + + E+
Sbjct: 201 AGLFGRAMDVFRELVALQCPKPDAGTMASILPSM--------GKARVEDIALLKGVFDEM 252
Query: 179 EHYG-----CMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
G M+ + + + +A+EL ++ +P+AV +L C
Sbjct: 253 RFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSC 302
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD++ W ++I+ +Q+ + ALD EM S + + VTM + L AC+ L AL G
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ G D +I ++L+DMY +CGS+ +S +F + +++L WN +I +H
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 679
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +A+ +F + ++PN +TF ++LSAC+H+GL+EEG + F M Y++ P VE
Sbjct: 680 GFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQ 739
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+AG + LE I F+PNA +WG+LLG C++H N ++A A L LE
Sbjct: 740 YACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELE 799
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG L+ N+Y+ RW + KIR MKE G+ K PG SWIE++RK++ F D S
Sbjct: 800 PQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKP-PGCSWIEVKRKLHSFVVGDTS 858
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++I + + L +K YVP+ +L
Sbjct: 859 HPLMEQISAKMESLYFDIKEIGYVPDTNFVL 889
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 33/249 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+W ++T ++Q + AL+ F M + G+ P+ T++ L+AC + L LG+EIH
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIH 522
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ ++ +GSAL+ MY+ C SL+ + VF +L +++ WNSII A G +
Sbjct: 523 GYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSV 582
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSM----TCGYSITPEV 178
AL + M NVE N VT +S L AC+ + +G+ +F+ TC + + +
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642
Query: 179 EHYG------------------------CMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ YG M+ + G DA+ L R+ +PN +
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHI 702
Query: 212 IWGALLGGC 220
+ LL C
Sbjct: 703 TFTNLLSAC 711
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 134/301 (44%), Gaps = 29/301 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ SWT ++ Y + E + F M N G+ PD V AC+ L +G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++++ Y++ IGF+ + + +++DM+ KCG +D + F ++ K++F WN ++ G
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL M V+P+ VT+ +++S +G EE + FL M P V
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329
Query: 181 YGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGCK----LHRNLEIAHIAV 233
+ ++ + G +AL + R +PN++ + + C L EI
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI----- 384
Query: 234 NELMILEPNNSGYC-------TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
GYC + LL + V +A+ + VA ++ G+ K+ SW
Sbjct: 385 ----------HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNA 434
Query: 287 M 287
M
Sbjct: 435 M 435
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT +I QN EAL F +M G+ P+ +T+A+ +SAC +L L GREIH
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385
Query: 65 LYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y +++ D D+ +G++LVD YAKC S++ + F +++ +L WN+++ G A+ G
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
EA+ + M ++ +EP+ +T+ +++ T G
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYG 478
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 130/269 (48%), Gaps = 16/269 (5%)
Query: 38 SPDQVT--MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+PD+ A++L C L L LG ++H ++ G D+ ++GS L+++Y + G ++ +
Sbjct: 84 NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 143
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F K+ E+N+F W +I+E G E + +F M+ E V P+ F V AC+
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203
Query: 156 GLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G+ + M + G+ V+ G ++D+ K G ++ A +F+ + +W
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVK--GSILDMFIKCGRMDIARRFFEEIEFK-DVFMWN 260
Query: 215 ALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
++ G + A ++++ + ++P+ + +++ YA+ ++ E +K + M
Sbjct: 261 IMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW-NAIISGYAQSGQFEEASKYFLEMG- 318
Query: 273 LGIEKRCPG-SSWIEM----ERKVYQFAA 296
G++ P SW + E+ Y F A
Sbjct: 319 -GLKDFKPNVVSWTALIAGSEQNGYDFEA 346
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/330 (42%), Positives = 213/330 (64%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG SP+ VTM ++L ACAHLGA+++GR I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G ++L+DMYAKCG ++ + VF + ++L WN++I G A+HG
Sbjct: 359 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHG 418
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A+ A +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SM Y ITP++EHY
Sbjct: 419 RANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHY 478
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL +GL ++A E+I + + +P+ VIW +LL CK++ N+E+ L+ +EP
Sbjct: 479 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEP 538
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N G LL N+YA RW EV KIR + + G+ K+ PG S IE++ V++F DK H
Sbjct: 539 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGDKFH 597
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 598 PRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ +EAL+ F EM + + PD+ TM +V+SACA +++LG
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y KCG ++ + +F L K++ WN++I G
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
EAL +F M+ PN VT +S+L AC H G +E GR + + +
Sbjct: 315 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 374
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
H ++D+ +K G +E A ++ S + W A++ G +H
Sbjct: 375 HRTSLIDMYAKCGDIEAAQQVF-DSILNRSLSSWNAMIFGFAMH 417
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T +L +CA A G++IH
Sbjct: 67 NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIH 126
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-------------------- 104
+V+++G+D+D+Y+ ++L+ MY + G L+ + VF +
Sbjct: 127 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 186
Query: 105 -----------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
K++ WN++I G A G EAL +F M+ NV P+ T +SV+SAC
Sbjct: 187 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 246
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ +E G R+ S + ++ ++DL K G +E A L ++ + + W
Sbjct: 247 QSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISW 304
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ + T+L + A E+ RW V
Sbjct: 305 NTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 205/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW+T++ Y + ++ AL F M G+ P+Q + T LSA A LG L+ G
Sbjct: 239 MPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG 298
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V + G + + +G+ALVDMYAKCG + + VF +R +++F WN++I GLA H
Sbjct: 299 KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F+R I E + P VTF+ VL+ C+ +GLV EGRR F + Y I PE+EH
Sbjct: 359 GLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEH 418
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A+ELI P+ V+WG +L CK H +++ N+L+ L+
Sbjct: 419 YGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELD 478
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SGY LL +YA+ ++W EV ++R M G K G S +E KV++F D
Sbjct: 479 PTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSA-GWSLMEAHGKVHKFLVGDTY 537
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S +IY +L ++++L A YVP++ ++L
Sbjct: 538 HKDSVQIYDTLDMINKRLTEAGYVPDVSSVL 568
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 41/208 (19%)
Query: 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNL 107
SAC+ LG+ +H ++ G D+++ +ALV Y G + VF +L R +++
Sbjct: 159 SACSFLGS-----HVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213
Query: 108 FCWNSIIEGLA--------------------------VHGFAHE-----ALAMFDRMIYE 136
WN ++ G V G+ E AL +F M+ +
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLLE 195
V PN ++ LSA GL+E G +F+ S P + G +VD+ +K G +
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHG--KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVA 331
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLH 223
A E+ + + + W A++ G H
Sbjct: 332 VAREVFDGMR-RRDVFAWNAMICGLAAH 358
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 213/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +++W +MI+ Y QN +EA++ F M++ G+ PD T ++LSACA +GA+ LG
Sbjct: 179 MPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLG 238
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + FD++V +G+AL++MY++CG++ ++ VF + EKN+ W ++I G +H
Sbjct: 239 FWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMH 298
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F+ M ++ PN VTF++VLSAC HAGLV+EGR+ F +M Y + P VEH
Sbjct: 299 GHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEH 358
Query: 181 YGCMVDLLSKAGLLEDALELIR-SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
CMVD+L +AG L +A + I+ +S +P +W A+LG CK+H+N ++ L+ +
Sbjct: 359 QVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSI 418
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G+ +L N+YA R V KIR M ++K G S I+++ KVY F+ DK
Sbjct: 419 EPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEV-GYSTIDVDHKVYLFSMGDK 477
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +++IY L +L + + A Y+P E+++
Sbjct: 478 SHPKTNQIYLYLDELMSRCREAGYIPASESVM 509
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 8/254 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + ++IT S+ +E+L + M + IS T + V+ + A L A +G
Sbjct: 78 IPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIG 137
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH +V G+ +D Y+ +ALV YAK G + + VF K+ EK + WNS+I G +
Sbjct: 138 ETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQN 197
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--RRRFLSMTCGYSITPEV 178
GF EA+ +F M V+P+ TF+S+LSAC G + G +++ C V
Sbjct: 198 GFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNC---FDLNV 254
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++++ S+ G + A E+ S + + N V W A++ G +H + A NE+
Sbjct: 255 VLGTALMNMYSRCGNVSKAREVFDSME-EKNIVAWTAMISGYGMHGHGSQAIELFNEMSF 313
Query: 239 --LEPNNSGYCTLL 250
PNN + +L
Sbjct: 314 DGPRPNNVTFVAVL 327
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDM-YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++IH ++ G + + L+ YA + + +FF + + + F ++S+I +
Sbjct: 36 QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSK 95
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEV 178
F E+L + RM+ N+ + TF +V+ + G + CGY + V
Sbjct: 96 FSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYV 155
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V +K+G + A ++ + V W +++ G
Sbjct: 156 Q--AALVSFYAKSGHVMIARKVFDKMP-EKTVVAWNSMISG 193
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 206/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ W ++T Y Q K+ +EAL F++M+ + + PD +TM +LSAC+ LGAL++G
Sbjct: 314 MPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMG 373
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + + V +G+ LVDMY+KCG++++++ VF ++ EKN W ++I GLA H
Sbjct: 374 MWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANH 433
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ F RMI ++P+ +TFI VLSAC HAGLV+EG+ F M Y + +++H
Sbjct: 434 GHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKH 493
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L++A L+ + +P+AV+WGAL C++H N+ + A +L+ L+
Sbjct: 494 YSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELD 553
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL NMYAE + + K+RV M+ LG+EK PG S IE+ V++F DKS
Sbjct: 554 PGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEK-VPGCSCIELNGVVHEFIVKDKS 612
Query: 301 HPASDEIYSSLSKLDEQLK 319
H IY L ++ Q++
Sbjct: 613 HTDIAAIYDCLHEITLQIE 631
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 129/267 (48%), Gaps = 52/267 (19%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGRE 62
RD++SW T+I Y + REAL+ F M G ++PD+VTM V+S A L L+LGR
Sbjct: 184 RDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRR 243
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H YV G V + + ++DMY KCG L+R+ VF + +K + W ++I G A G
Sbjct: 244 LHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGL 303
Query: 123 AHEALAMFDRMIYEN-------------------------------VEPNGVTFISVLSA 151
+A +FD M + VEP+ +T +++LSA
Sbjct: 304 MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSA 363
Query: 152 CTHAGLVEEG---------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
C+ G +E G RR LS+ G + +VD+ SK G +E A+ + +
Sbjct: 364 CSQLGALEMGMWVHHYIDRRRVSLSVMLGTN----------LVDMYSKCGNIEKAIRVFK 413
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ NA+ W A++ G H + ++A
Sbjct: 414 EIP-EKNALTWTAMISGLANHGHADVA 439
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 8/240 (3%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
PD +T +L ACA L + G + V+ +GF DV++ +A + A C S+ + +
Sbjct: 118 PDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKL 177
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGL 157
F ++L WN++I G G EAL MF RM+ + V P+ VT I V+S
Sbjct: 178 FDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRD 237
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+E G RR + + V ++D+ K G LE A + + V W ++
Sbjct: 238 LELG-RRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGID-KKTIVSWTTMI 295
Query: 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
G ++ A +E+ P + L+ Y + R E ++ M+E +E
Sbjct: 296 VGYAQFGLMDDARKVFDEM----PERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVE 351
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 208/319 (65%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ W ++T Y Q KQ +EAL F+EM+ + + PD++TM +L+AC+ LGAL++G
Sbjct: 320 MPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMG 379
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + V +G++L+DMYAKCG++++++ +F ++ EKN W ++I GLA H
Sbjct: 380 MWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANH 439
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+EA+ F MI +P+ +TFI VLSAC HAGLV+EGR F M Y + +++H
Sbjct: 440 GHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKH 499
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL +AG L++A +L+ + +P+AV+WGA+ C++ N+ + A +L+ ++
Sbjct: 500 YSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEID 559
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL NMYAE + + K+R M+ LG+EK PG S IE+ V++F DKS
Sbjct: 560 PSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEK-VPGCSCIELNGVVHEFIVKDKS 618
Query: 301 HPASDEIYSSLSKLDEQLK 319
H S IY L ++ Q+K
Sbjct: 619 HMDSHAIYDCLHEITLQIK 637
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 53/264 (20%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDL 59
P RD++SW T+I Y + EAL+ F M +++ + PD+VTM +S C + L+L
Sbjct: 187 PVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLEL 246
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL--------------------------- 92
GR +H +V G V + +AL+DMY KCGSL
Sbjct: 247 GRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAK 306
Query: 93 ----DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
D + VF ++ E+++F WN+++ G EAL++F M +V P+ +T +++
Sbjct: 307 FGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNL 366
Query: 149 LSACTHAGLVEEG---------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
L+AC+ G +E G R S+ G S ++D+ +K G +E A+
Sbjct: 367 LTACSQLGALEMGMWVHRYIEKHRLVFSVALGTS----------LIDMYAKCGNIEKAIH 416
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ + + NA+ W A++ G H
Sbjct: 417 IFKEIP-EKNALTWTAMICGLANH 439
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 34/230 (14%)
Query: 23 REALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81
R L + + SG + PD +T +L ACA L G +V+++G D DV++ +A
Sbjct: 106 RRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNA 165
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--VE 139
+ G ++ + +F + ++L WN++I G G EAL +F RM+ E+ V
Sbjct: 166 ATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVR 225
Query: 140 PNGVTFISVLSACTHAGLVEEGRR--------------RFLS------MTCG-----YSI 174
P+ VT I+ +S C +E GRR R ++ + CG S+
Sbjct: 226 PDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSV 285
Query: 175 TPEVEH-----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+EH + M+ +K GL++DA ++ + + W AL+ G
Sbjct: 286 FERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMP-ERDVFPWNALMTG 334
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 204/327 (62%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWT+++T Y+QN E+L F +M+ +G++PDQ +A++LSACA L L+ G
Sbjct: 425 MLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFG 484
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++HL ++ G + ++LV MYAKCG LD + +F ++ K++ W +II G A +
Sbjct: 485 KQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQN 544
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +L +D M+ P+ +TFI +L AC+HAGLV+EGR+ F M Y I P EH
Sbjct: 545 GKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH 604
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DL ++G L++A +L+ +P+A +W +LL C++H NLE+A A L LE
Sbjct: 605 YACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELE 664
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+ +L NMY+ +W +V KIR MK GI K PG SW+E+ +V F + D+
Sbjct: 665 PMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKE-PGCSWLEINSRVNTFISDDRG 723
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP EIY+ + ++ ++K A YVP++
Sbjct: 724 HPREAEIYTKIDEIILRIKEAGYVPDM 750
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 4/216 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ + WT M+T Y+QN +A++ F M G+ +Q T T+L+AC+ + A G ++
Sbjct: 228 KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQV 287
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ GF +VY+ SALVDMYAKCG L + + + + ++ WNS++ G HG
Sbjct: 288 HGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLE 347
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M N++ + TF SVL+ C G + L + G+ V +
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINPKSVHGLIIKTGFENYKLVSN--A 404
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G ++ A + + + + W +L+ G
Sbjct: 405 LVDMYAKTGDMDCAYTVFE-KMLEKDVISWTSLVTG 439
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 6/220 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D++SW +++ + ++ EAL F M + D T +VL+ C +G+++
Sbjct: 326 MEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSIN-P 383
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++ GF+ + +ALVDMYAK G +D + VF K+ EK++ W S++ G A +
Sbjct: 384 KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVE 179
E+L +F M V P+ S+LSAC L+E G++ L + G + V
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSV- 502
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
Y +V + +K G L+DA + S + + + + W A++ G
Sbjct: 503 -YNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAIIVG 540
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 39/258 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREA-------------------------------LDAF 29
MP +D SW TMI+ Y + EA D F
Sbjct: 91 MPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF 150
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89
M+ G Q T+ +VL C+ LG + G IH +V++ GF+ +V++ + LVDMYAKC
Sbjct: 151 RSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKC 210
Query: 90 GSLDRSLLVF--FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
+ + +F + KN W +++ G A +G ++A+ F M + VE N TF +
Sbjct: 211 KCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPT 270
Query: 148 VLSACTH--AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+L+AC+ A E F+ + G+ V+ +VD+ +K G L++A ++ + +
Sbjct: 271 ILTACSSVLARCFGEQVHGFI-VKSGFGSNVYVQ--SALVDMYAKCGDLKNAKNMLETME 327
Query: 206 FQPNAVIWGALLGGCKLH 223
+ V W +L+ G H
Sbjct: 328 -DDDVVSWNSLMVGFVRH 344
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 204/330 (61%), Gaps = 2/330 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
ARD+ISW +MI ++Q+ + A F EM+N + PD +T A+VLS C + AL+LG++
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH + + G +DV +G+AL++MY +CGSL + VF L+ +++ W ++I G A G
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613
Query: 123 AHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+A+ +F +M E P +G TF S+LSAC HAGLV EG + F SM Y + P +EHY
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 673
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GC+V LL +A ++A LI F P+A +W LLG C++H N+ +A A N + L
Sbjct: 674 GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 733
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N LL N+YA RW +V KIR M+ GI K PG SWIE++ +++F A+D+SH
Sbjct: 734 RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKE-PGRSWIEVDNIIHEFIAADRSH 792
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY+ L +L +++ A Y P+ + +L
Sbjct: 793 PETAEIYAELKRLSVEMEEAGYFPDTQHVL 822
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW +I Y++ + EA+ + +M++ G+ P +VT +LSACA+ A G
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH +++ G + ++ +AL++MY +CGSL + VF + +++ WNS+I G A H
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F M E +EP+ +TF SVLS C + +E G++ +T + +V
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNL 569
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
++++ + G L+DA + S + + + + W A++GGC
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 126/223 (56%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW ++I+CY+Q ++A F EM+N+G P+++T ++L+AC L+ G
Sbjct: 88 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ G+ D + ++L+ MY KCG L R+ VF + +++ +N+++ A
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ E L +F +M E + P+ VT+I++L A T +++EG +R +T + ++
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLNSDIRV 266
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + + G ++ A + + + + V++ AL+ H
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQH 308
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 136/249 (54%), Gaps = 4/249 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ + +I +Q+ EA + + M++ G++ ++ T ++L+AC+ AL+ G+ I
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ + G DV IG+AL+ MYA+CG L ++ +F+ + +++L WN+II G A
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDR 412
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ ++ +M E V+P VTF+ +LSAC ++ +G+ + I
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANA 471
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEP 241
++++ + G L +A + ++ + + + W +++ G H + E A+ E+ LEP
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530
Query: 242 NNSGYCTLL 250
+N + ++L
Sbjct: 531 DNITFASVL 539
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 117/216 (54%), Gaps = 2/216 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++S+ TM+ Y+Q +E L F +M + GISPD+VT +L A LD G+ I
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ G + D+ +G+ALV M +CG +D + F + ++++ +N++I LA HG
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHN 311
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA + RM + V N T++S+L+AC+ + +E G + S + +V+
Sbjct: 312 VEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNA 370
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + ++ G L A EL + + + + W A++ G
Sbjct: 371 LISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 6/194 (3%)
Query: 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86
D N + D+ T +L C L + IH +++ G D+++ + L++MY
Sbjct: 13 DVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMY 72
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
KC S+ + VF ++ +++ WNS+I A GF +A +F+ M PN +T+I
Sbjct: 73 VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132
Query: 147 SVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
S+L+AC +E G++ + GY P V++ ++ + K G L A ++ +
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVF--AG 188
Query: 206 FQPNAVI-WGALLG 218
P V+ + +LG
Sbjct: 189 ISPRDVVSYNTMLG 202
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + +ISW M+ Y+ N+ EA++ F M+ GI PD VT+ATVL +C + AL LG
Sbjct: 142 MRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG 201
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + + + + +AL+DMYA CG L + VF + +++ W SII H
Sbjct: 202 KRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRH 261
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F++M + +EP+ + F+++L+AC+HAGL++ G+ F SMT + I P++EH
Sbjct: 262 GHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEH 321
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG + +A + I +PN +WGALLG C++H N++I +A + L+ L
Sbjct: 322 YACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLA 381
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +GY LL N+YA RWA+V+ +R M+ GI K+ PG S E+ +V+ F D S
Sbjct: 382 PKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGI-KKLPGVSNAELGDRVHTFHIGDTS 440
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S IY LS+L +++ Y PE+EA L
Sbjct: 441 HPQSKMIYKKLSELLRRIREMGYNPEVEATL 471
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 33 KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
+ G+ P + + +CA L LGR+IH ++G D +V++ + + MYA+CG
Sbjct: 4 QGPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRP 63
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI-YENVEPNGVTFISVLSA 151
D + +F +++ +++ WN++I G A G A+ +F ++ + +P+ T S+L +
Sbjct: 64 DDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS 123
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-----CMVDLLSKAGLLEDALEL---IRS 203
G+ R + + E+ G M+ + + + +A+EL ++
Sbjct: 124 M--------GKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQK 175
Query: 204 SKFQPNAVIWGALLGGC 220
+P+AV +L C
Sbjct: 176 DGIEPDAVTLATVLPSC 192
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
M RD++SW MI+ ++ F A+D F E+ PD TMA++L +
Sbjct: 73 MQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS--------- 123
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL--VFFKLREKNLFCWNSIIEGL 117
+G A V+ D +LL VF ++R K L WN+++
Sbjct: 124 ------------------MGKARVE--------DIALLKGVFDEMRFKGLISWNAMLAVY 157
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ EA+ +F RM + +EP+ VT +VL +C + G+R
Sbjct: 158 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKR 203
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 203/323 (62%), Gaps = 3/323 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT MI+ QN+ + +AL F++M+ + P+ T++T+L ACA L G EIH
Sbjct: 503 NVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIH 562
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ M+ GF D+YI +AL+DMY+K G L + VF ++EK L CWN ++ G A++G
Sbjct: 563 CFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGE 622
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +FD M + P+ +TF ++LS C ++GLV +G + F SM YSI P +EHY CM
Sbjct: 623 EVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCM 682
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL KAG L++AL+ I + + +A IWGA+L C+LH++++IA IA L LEP NS
Sbjct: 683 VDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNS 742
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS-SWIEMERKVYQFAASDKSHPA 303
L++N+Y+ RW +V +++ +M +G+ + P SWI++ + ++ F+ KSHP
Sbjct: 743 ANYVLMMNIYSTFERWGDVERLKESMTAMGV--KIPNVWSWIQVRQTIHVFSTEGKSHPE 800
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
EIY L +L ++K YVP+
Sbjct: 801 EGEIYFDLYQLISEIKKLGYVPD 823
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 4/219 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+W ++++ + + L ++++G PD ++ + L A LG +LG+EIH
Sbjct: 332 DIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIH 391
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y+M+ + DVY+ ++LVDMY K L+++ +VF + KN+ WNS+I G G
Sbjct: 392 GYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFD 451
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A + +M E ++ + VT+ S++S + +G EE ++ +TP V + M
Sbjct: 452 NAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEA-LAVINRIKSLGLTPNVVSWTAM 510
Query: 185 VDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
+ + DAL+ ++ +PN+ LL C
Sbjct: 511 ISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 34/259 (13%)
Query: 3 ARDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
AR+ + W + + + S E L+ F E+ + G+ D + VL C L L LG
Sbjct: 92 ARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGM 151
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E+H +++ GF +DV++ AL+++Y KC +DR+ VF + + F WN+I+
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSE 211
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR------RF---------L 166
+AL + RM + + T + +L AC + EG++ RF
Sbjct: 212 RWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271
Query: 167 SMTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALELIR---SSKFQP 208
S+ YS +E + ++ + G L A +L R SS +P
Sbjct: 272 SIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKP 331
Query: 209 NAVIWGALLGGCKLHRNLE 227
+ + W +LL G L + E
Sbjct: 332 DIITWNSLLSGHLLQGSYE 350
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 84/150 (56%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++ W T++ +++++ +AL+ M+++ T+ +L AC L AL+ G+
Sbjct: 193 PLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGK 252
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH YV++ G + I +++V MY++ L+ + VF + NL WNSII AV+G
Sbjct: 253 QIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNG 312
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+ A +F M +++P+ +T+ S+LS
Sbjct: 313 CLNGAWDLFREMESSSIKPDIITWNSLLSG 342
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 40/237 (16%)
Query: 61 REIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE+H ++++ + V + +++ Y + G + + VFF +N WNS +E A
Sbjct: 48 RELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFAS 107
Query: 120 HGF-AHEALAMFDRMIYENVEPNGVTFISVLSAC-----------THAGLVEEGRRRFLS 167
G +HE L +F + + V+ + VL C HA L++ G + +
Sbjct: 108 FGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVH 167
Query: 168 MTCG-----------------YSITPEVEHY--GCMVDLLSKAGLLEDALELIR-----S 203
++C + TP E + +V ++ EDALEL R S
Sbjct: 168 LSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSAS 227
Query: 204 SKFQPNAVIWGALLGGCKLHRNL-EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259
+K ++ LL C R L E I + +N+ C +++MY+ +R
Sbjct: 228 AKATDGTIV--KLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNR 282
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 210/334 (62%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P RD++SW T+IT Y QN EA+ +N+M N G+ P Q T +VL A ++LG L
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H ++ G ++DVY+ + L+D+YAKCG L ++ +F + ++ WN+II GL V
Sbjct: 391 GMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV 450
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL++F +M E ++P+ VTF+S+L+AC+HAGLV++GR F M Y I P +
Sbjct: 451 HGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAK 510
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+L +AG L++A E I+S +P++ +WGALLG C++H N+E+ +A L L
Sbjct: 511 HYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 570
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P N GY L+ NMYA++ +W V +R ++ ++K PG S +E++ V F + +
Sbjct: 571 DPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQK-TPGWSSMEVKGSVSVFYSGTQ 629
Query: 300 S--HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ HP +EI L L ++K A YVP+ +L
Sbjct: 630 TEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVL 663
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 168/330 (50%), Gaps = 27/330 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W ++I+ Q + A++ F+ M SG+ PD +T+ ++ SA A G
Sbjct: 229 MALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGA 288
Query: 61 REIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ +H YV + G+D+ D+ G+A+VDMYAK +D + VF L ++++ WN++I G
Sbjct: 289 KSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQ 348
Query: 120 HGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPE 177
+G A+EA+ +++ M +E ++P TF+SVL A ++ G +++G R LS+ G ++ +
Sbjct: 349 NGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNL--D 406
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V C++DL +K G L +A+ L + W A++ G +H + A +++
Sbjct: 407 VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP-WNAIIAGLGVHGHGAKALSLFSQMQ 465
Query: 238 I--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
++P++ + +LL A G+ + G S+ ++ + VY
Sbjct: 466 QEEIKPDHVTFVSLL-----------------AACSHAGLVDQ--GRSFFDLMQTVYGIV 506
Query: 296 ASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
K + ++ +LDE + +P
Sbjct: 507 PIAKHYTCMVDMLGRAGQLDEAFEFIQSMP 536
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 11/224 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ +W M++ +N + +A+ M G++ D VT+++VL C LG L
Sbjct: 128 MPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALA 187
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H+Y ++ G ++++ +AL+D+Y K G L + VF + ++L WNSII
Sbjct: 188 LVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQG 247
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-----GYSIT 175
G A+ +F M+ V P+ +T +S+ SA G E G + S+ C G+ +
Sbjct: 248 GKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG-DELGAK---SVHCYVRRRGWDVG 303
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ MVD+ +K + DA + + + + V W L+ G
Sbjct: 304 -DIIAGNAMVDMYAKMSKI-DAAQKVFDNLPDRDVVSWNTLITG 345
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRS 95
+ PD T ++ A + ++H +++G +V+ +LV Y + G + +
Sbjct: 65 LRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
VF ++ E+++ WN+++ GL + A +A+ + RM+ E V + VT SVL C
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC--- 178
Query: 156 GLVEEGRRRFLSM---TCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
+V R L M + ++ E+ ++D+ K G+L +A
Sbjct: 179 -VVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEA 222
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/337 (42%), Positives = 210/337 (62%), Gaps = 17/337 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG P+ VTM ++L ACAHLGA+D+GR I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 64 HLYVMQIGFDIDVYIGSA---------LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
H+Y ID + SA L+DMYAKCG ++ + VF + K+L WN++I
Sbjct: 390 HVY-------IDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A+HG A A +F RM +EP+ +TF+ +LSAC+ +G+++ GR F +MT Y I
Sbjct: 443 FGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKI 502
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
TP++EHYGCM+DLL +GL ++A E+I + + +P+ VIW +LL CK+ N+E+
Sbjct: 503 TPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQ 562
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L+ +EP N G LL N+YA RW EV KIR + + G+ K+ PG S IE++ V++F
Sbjct: 563 NLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGM-KKVPGCSSIEIDSVVHEF 621
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DK HP + EIY L +++ L+ A +VP+ +L
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVL 658
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 144/259 (55%), Gaps = 16/259 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ ++EAL+ F EM + I PD+ TM TV+SACA G+++LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I ++L+D+Y+KCG L+ + +F L K++ WN++I G
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR +R S T S
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ ++D+ +K G +E A ++ +S + W A++ G +H + A
Sbjct: 406 LRTS------LIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMHGRADAAFDIF 458
Query: 234 NEL--MILEPNNSGYCTLL 250
+ + + +EP++ + LL
Sbjct: 459 SRMRKIGIEPDDITFVGLL 477
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 34/253 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T +L +CA A G++IH
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIH 157
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
+V+++G+D+D+++ ++L+ +Y + G L+ + VF +
Sbjct: 158 GHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIE 217
Query: 102 --------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ K++ WN++I G A G EAL +F M+ N+ P+ T ++V+SAC
Sbjct: 218 SAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACA 277
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E G R+ S + ++ ++DL SK G LE A L ++ + + W
Sbjct: 278 QSGSIELG-RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK-DVISW 335
Query: 214 GALLGGCKLHRNL 226
L+GG H NL
Sbjct: 336 NTLIGGYT-HMNL 347
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 115/263 (43%), Gaps = 23/263 (8%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD---RSLLVFFKL 102
++L C L +L R IH +++ G Y S L+++ D ++ VF +
Sbjct: 38 SLLHNCKTLQSL---RLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETI 94
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+E NL WN++ G A+ AL ++ MI + PN TF +L +C + +EG+
Sbjct: 95 QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQ 154
Query: 163 R-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
+ + GY + V + ++ + + G LEDA ++ S + + V + AL+ G
Sbjct: 155 QIHGHVLKLGYDLDLFV--HTSLISVYVQNGRLEDARKVFDRSPHR-DVVSYTALIKGYA 211
Query: 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR--- 278
+E A +E+ + + +++ YAE + E ++ M + I
Sbjct: 212 SRGYIESAQKLFDEIPV---KDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDEST 268
Query: 279 -------CPGSSWIEMERKVYQF 294
C S IE+ R+V+ +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHSW 291
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD++ W ++I+ +Q+ + ALD EM S + + VTM + L AC+ L AL G
Sbjct: 317 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 376
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ G D +I ++L+DMY +CGS+ +S +F + +++L WN +I +H
Sbjct: 377 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 436
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +A+ +F + ++PN +TF ++LSAC+H+GL+EEG + F M Y++ P VE
Sbjct: 437 GFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQ 496
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+AG + LE I F+PNA +WG+LLG C++H N ++A A L LE
Sbjct: 497 YACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELE 556
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG L+ N+Y+ RW + KIR MKE G+ K PG SWIE++RK++ F D S
Sbjct: 557 PQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKP-PGCSWIEVKRKLHSFVVGDTS 615
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++I + + L +K YVP+ +L
Sbjct: 616 HPLMEQISAKMESLYFDIKEIGYVPDTNFVL 646
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 91/162 (56%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ SWT ++ Y + E + F M N G+ PD V AC+ L +G
Sbjct: 71 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++++ Y++ IGF+ + + +++DM+ KCG +D + F ++ K++F WN ++ G
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G +AL +F +M+ E V+PN +T S +SACT+ L+ GR
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 232
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 128/294 (43%), Gaps = 77/294 (26%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ W M++ Y+ +F++AL+ F +M G+ P+ +T+A+ +SAC +L L GREI
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 234
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKCGSLD----------------------------- 93
H Y +++ D D+ +G++LVD YAKC S++
Sbjct: 235 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQY 294
Query: 94 ---RSLLVFFK-----------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
++ L FF+ L +++ WNSII A G + AL + M NVE
Sbjct: 295 GDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 354
Query: 140 PNGVTFISVLSACTHAGLVEEGR--RRFLSM----TCGYSITPEVEHYG----------- 182
N VT +S L AC+ + +G+ +F+ TC + + ++ YG
Sbjct: 355 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRI 414
Query: 183 -------------CMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC 220
M+ + G DA+ L R+ +PN + + LL C
Sbjct: 415 FDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSAC 468
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 39/285 (13%)
Query: 38 SPDQVT--MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+PD+ A++L C L L LG ++H ++ G D+ ++GS L+++Y + G ++ +
Sbjct: 5 NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 64
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F K+ E+N+F W +I+E G E + +F M+ E V P+ F V AC+
Sbjct: 65 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 124
Query: 156 GLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G+ + M + G+ V+ G ++D+ K G ++ A +F+ + +W
Sbjct: 125 KNYRVGKDVYDYMLSIGFEGNSCVK--GSILDMFIKCGRMDIARRFFEEIEFK-DVFMWN 181
Query: 215 ALLGGCKLHRNLEIAHIAVNELMILE---PNN----------------------SGYCTL 249
++ G + A + V M+LE PN+ GYC
Sbjct: 182 IMVSGYTSKGEFKKA-LNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK 240
Query: 250 LLNMYAE-------VSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
+ + ++ V +A+ + VA ++ G+ K+ SW M
Sbjct: 241 VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAM 285
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 201/320 (62%), Gaps = 2/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
MP R+ +SWT MIT Y Q + L+ F EM+ G P +T+ VLS CA +GA DL
Sbjct: 195 MPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL 254
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H YV + D+DV + +AL+DMYAK G+L +L +F ++ ++++F W ++I GLA+
Sbjct: 255 GSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLAL 314
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG AL F M V PN VT +SVLSAC+HAGLV EGR F M + I P+++
Sbjct: 315 HGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQ 374
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL +A ELI +P++VIW +LL C +H NL +A +A ++ L
Sbjct: 375 HYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIEL 434
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP++ G LL N+Y SRW + K R AM++ ++K+ PG SW+E+ V++F A D
Sbjct: 435 EPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKK-PGCSWVEVNGVVHEFLAEDA 493
Query: 300 SHPASDEIYSSLSKLDEQLK 319
H ++Y+ L + EQ+K
Sbjct: 494 VHCIRADVYTVLEAITEQMK 513
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 42/255 (16%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+SWT +I+ Y Q +A F+ + +SG+ PD + +SAC H L GR +H
Sbjct: 67 DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVH 126
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V + D +G+AL+DMY++ G+++ + VF + K++ W S++ G
Sbjct: 127 GMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIE 186
Query: 125 EALAMFDRMIYENVE--------------------------------PNGVTFISVLSAC 152
A +FD M N P +T ++VLS C
Sbjct: 187 AARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGC 246
Query: 153 THAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
G + G S GY ++ +V ++D+ +K+G L AL++ + +
Sbjct: 247 ADIGAFDLG-----SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP-KR 300
Query: 209 NAVIWGALLGGCKLH 223
+ W ++ G LH
Sbjct: 301 DVFSWTTMISGLALH 315
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW +M+ ++ N + +D FN MK +GI+PDQ TM +L AC G
Sbjct: 225 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 284
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + GF+ D+ I +AL+++YAK G L+ S +F ++++++ W +++ G AVH
Sbjct: 285 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 344
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA+ +FD M+ E VE + VTF +LSAC+H+GLVEEG++ F M+ Y + P ++H
Sbjct: 345 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 404
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL ++G LEDA ELI+S +P++ +WGALLG C+++ N+E+ +L+ L+
Sbjct: 405 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 464
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ +L N+Y+ W + +K+R MKE + R PG S+IE K+++F D+
Sbjct: 465 PSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRL-TRNPGCSFIEHGNKIHRFVVGDQL 523
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SDEI++ L +L +++ A P+ E +L
Sbjct: 524 HPRSDEIHTKLEELIRKIREAGCAPKTEFVL 554
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 11/228 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP +D++SW ++++ S L+AF M+ SG P++VT+ +V+SACA +GALD
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H V+++G + ++L++MY K G LD + +F ++ ++L WNS++
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEV 178
+G+A + + +F+ M + P+ T +++L ACT GL + + CG++ ++
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN--ADI 300
Query: 179 EHYGCMVDLLSKAGLL---EDALELIRSSKFQPNAVIWGALLGGCKLH 223
+++L +K G L ED E I+ + + W A+L G +H
Sbjct: 301 IIATALLNLYAKLGRLNASEDIFEEIKDR----DRIAWTAMLAGYAVH 344
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ D +IG LV MY K G + + +F ++ K+L WNS++ GL+ G+
Sbjct: 84 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143
Query: 123 AHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
L F RM E+ +PN VT +SV+SAC G ++EG + + ++ + +
Sbjct: 144 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG-KSLHGVVVKLGMSGKAKVV 202
Query: 182 GCMVDLLSKAGLLEDALELI 201
++++ K G L+ A +L
Sbjct: 203 NSLINMYGKLGFLDAASQLF 222
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 209/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++S T +I+ Y+Q EALD F ++ G+ + VT A+VL+A + L ALD G
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V++ V + ++L+DMY+KCGSL S +F + E+ + WN+++ G + H
Sbjct: 232 RQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKH 291
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPEV 178
G EA+ +F M EN V+P+ VTF++VLS C+H G+ + G F M PE+
Sbjct: 292 GLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 351
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDL +AG +E+A E I+ F+P A IWG+LLG C++H+N+ I L+
Sbjct: 352 EHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLE 411
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E N+G +L N+YA RW +V +R MKE + K PG SWIE+++ ++ F ASD
Sbjct: 412 IESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKE-PGRSWIELDQTLHTFHASD 470
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+SHP +E+++ + +L ++K A YVPEL +L
Sbjct: 471 RSHPRKEEVFAKVRELSIKIKEAGYVPELSCVL 503
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 39/300 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ YSQ EAL F EM SG +P++ T ATVL++C LG
Sbjct: 71 MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH V++ F+ +++GS+L+DMYAK G + + VF L E+++ +II G A
Sbjct: 131 RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 190
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------------- 163
G EAL +F R+ E + N VT+ SVL+A + ++ GR+
Sbjct: 191 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 250
Query: 164 -RFLSM--TCG--------YSITPE--VEHYGCMVDLLSKAGLLEDALELIR----SSKF 206
+ M CG + PE V + M+ SK GL +A+EL + +K
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 310
Query: 207 QPNAVIWGALLGGCKL----HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262
+P++V + A+L GC R LEI + VN+ EP Y +++++ R E
Sbjct: 311 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY-GCVVDLFGRAGRVEE 369
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
+VL+ C A+ G+ +H ++++ ++ VY+ + L+ +Y KC L + V ++ E+
Sbjct: 15 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
N+ W ++I G + G+A EAL +F M+ PN TF +VL++CT + + G R+
Sbjct: 75 NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG-RQI 133
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
S+ S + ++D+ +KAG + +A
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEA 165
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 213/333 (63%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK--NSGISPDQVTMATVLSACAHLGALD 58
MP +DI +W +I+ Y Q+ + +EAL F E++ SG PDQVT+ + LSACA LGA+D
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+G IH Y+ + ++ + ++L+DMY+K G +++++ VF + K++F W+++I GLA
Sbjct: 495 IGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLA 554
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A+ +F M V+PN VTF ++L AC+H+GLV+EG+R F M Y + P+
Sbjct: 555 MHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKT 614
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HY CMVD+L +AG LE+AL+ I P+A +WGALLG C +H NLE+A A + L+
Sbjct: 615 KHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLE 674
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA+ W V+++R M++ G++K G S IE++ V++F D
Sbjct: 675 IEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKET-GCSSIEIDGTVHEFIVGD 733
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP S +IY+ L ++ +L+ YV ML
Sbjct: 734 NAHPLSRDIYAKLDEIMARLRSHGYVANTLCML 766
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 47/287 (16%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI+SW +M+T + Q +ALD F M+N G+ P+ VTM +V+SACA L LGR++
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV---H 120
Y+ + +++ + +A +DM+ KCG ++ + +F + ++++ W +II+G A H
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425
Query: 121 GFAH----------------------------EALAMFD--RMIYENVEPNGVTFISVLS 150
G A EALA+F ++ P+ VT +S LS
Sbjct: 426 GIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLS 485
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVE----HYGCMVDLLSKAGLLEDALELIRSSKF 206
AC G ++ G GY ++ ++D+ SK+G +E A+E+ S
Sbjct: 486 ACAQLGAMDIG-----EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG- 539
Query: 207 QPNAVIWGALLGGCKLHRNLEIA---HIAVNELMILEPNNSGYCTLL 250
+ +W A++ G +H E A + + E + +PN+ + LL
Sbjct: 540 NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQV-KPNSVTFTNLL 585
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P ++ SW +I + + +++ F M +S P++ T ++ A A +
Sbjct: 199 IPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLV 258
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGL 117
G+ +H ++ F DV++ ++L+ YA CG LD + LVF + K++ WNS++ G
Sbjct: 259 GKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF 318
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G+ +AL +F+RM E V PN VT +SV+SAC + GR+ C Y E
Sbjct: 319 VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRK-----VCDYIDRNE 373
Query: 178 ----VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +D+ K G +E A L + + + + V W ++ G
Sbjct: 374 MMMNLNVCNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTIIDG 418
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 55/273 (20%)
Query: 32 MKNSGISPDQVTMATV-----LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM- 85
+++S +P T V C L ++IH +++ D Y S L
Sbjct: 125 VQHSSPTPASATATNVGDRALFQQCTSFKQL---KQIHAQMLRTNKLHDPYAASELFTAA 181
Query: 86 -YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGV 143
++ +LD + VF ++ + NL+ WN +I LA +++ +F RM++++ PN
Sbjct: 182 AFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKF 241
Query: 144 TFISVLSA-----CTHAGLVEEG---RRRF------------LSMTCGY----------- 172
TF ++ A C G G + F +CG+
Sbjct: 242 TFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMI 301
Query: 173 -SITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCKLHRNLEI 228
++ + MV + G + AL+L +R+ PNAV +++ C NL +
Sbjct: 302 EGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTL 361
Query: 229 A-----HIAVNELMILEPNNSGYCTLLLNMYAE 256
+I NE+M+ N C ++M+ +
Sbjct: 362 GRKVCDYIDRNEMMM----NLNVCNATIDMFVK 390
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 209/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++S T +I+ Y+Q EALD F ++ G+ + VT A+VL+A + L ALD G
Sbjct: 639 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 698
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V++ V + ++L+DMY+KCGSL S +F + E+ + WN+++ G + H
Sbjct: 699 RQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKH 758
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPEV 178
G EA+ +F M EN V+P+ VTF++VLS C+H G+ + G F M PE+
Sbjct: 759 GLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 818
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDL +AG +E+A E I+ F+P A IWG+LLG C++H+N+ I L+
Sbjct: 819 EHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLE 878
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E N+G +L N+YA RW +V +R MKE + K PG SWIE+++ ++ F ASD
Sbjct: 879 IESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKE-PGRSWIELDQTLHTFHASD 937
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+SHP +E+++ + +L ++K A YVPEL +L
Sbjct: 938 RSHPRKEEVFAKVRELSIKIKEAGYVPELSCVL 970
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 39/300 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ YSQ EAL F EM SG +P++ T ATVL++C LG
Sbjct: 538 MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG 597
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH V++ F+ +++GS+L+DMYAK G + + VF L E+++ +II G A
Sbjct: 598 RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 657
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------------- 163
G EAL +F R+ E + N VT+ SVL+A + ++ GR+
Sbjct: 658 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 717
Query: 164 -RFLSM--TCG--------YSITPE--VEHYGCMVDLLSKAGLLEDALELIR----SSKF 206
+ M CG + PE V + M+ SK GL +A+EL + +K
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 777
Query: 207 QPNAVIWGALLGGCKL----HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262
+P++V + A+L GC R LEI + VN+ EP Y +++++ R E
Sbjct: 778 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY-GCVVDLFGRAGRVEE 836
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 4/179 (2%)
Query: 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYI 78
N+Q +EAL EM G+ + +VL+ C A+ G+ +H ++++ ++ VY+
Sbjct: 458 NRQLKEAL---LEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYL 514
Query: 79 GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV 138
+ L+ +Y KC L + V ++ E+N+ W ++I G + G+A EAL +F M+
Sbjct: 515 RTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGT 574
Query: 139 EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
PN TF +VL++CT + + G R+ S+ S + ++D+ +KAG + +A
Sbjct: 575 APNEFTFATVLTSCTSSSGFQLG-RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEA 632
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 207/329 (62%), Gaps = 1/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ ISWT +I + + EAL+ F EM+ SG++PD VT+ V++ACA+LG L LG
Sbjct: 187 LPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H VM F +V + ++L+DMY++CG +D + VF ++ ++ L WNSII G AV+
Sbjct: 247 LWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVN 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL+ F+ M E +P+GV++ L AC+HAGL+ EG R F M I P +EH
Sbjct: 307 GLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL S+AG LE+AL ++++ +PN VI G+LL C+ N+ +A +N L+ L+
Sbjct: 367 YGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELD 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
LL N+YA V +W K+R MKE GI+K+ PG S IE++ +++F + DKS
Sbjct: 427 SGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKK-PGFSSIEIDSSIHKFVSGDKS 485
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEA 329
H D IY++L L +L+L Y+P+
Sbjct: 486 HEEKDHIYAALEFLSFELQLCGYIPDFSG 514
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 127/250 (50%), Gaps = 39/250 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHL---GALDLGRE 62
I+SWTT I Y ++ +A F +M+ + I P+ +T T+LSACAH ++ G
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 63 IHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH +V ++G DI DV +G+AL+DMYAKCG ++ + L F ++ +NL WN++I+G +G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 122 FAHEALAMFDRMIYEN-------------------------------VEPNGVTFISVLS 150
+AL +FD + +N V P+ VT I+V++
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235
Query: 151 ACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
AC + G + G L MT + +V + ++D+ S+ G ++ A ++ Q
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSN--SLIDMYSRCGCIDLARQVFDRMP-QRT 292
Query: 210 AVIWGALLGG 219
V W +++ G
Sbjct: 293 LVSWNSIIVG 302
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 205/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW+T++ Y + ++ AL F M G+ P+Q + T LSA A LG L+ G
Sbjct: 239 MPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG 298
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V + G + + +G+ALVDMYAKCG + + VF +R +++F WN++I GLA H
Sbjct: 299 KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F+R I E + P VTF+ VL+ C+ +GLV EGRR F + Y I PE+EH
Sbjct: 359 GLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEH 418
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A+ELI P+ V+WG +L CK H +++ N+L+ L+
Sbjct: 419 YGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELD 478
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SGY LL +YA+ ++W EV ++R M G K G S +E KV++F D
Sbjct: 479 PTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSA-GWSLMEAHGKVHKFLVGDTY 537
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S +IY +L ++++L A YVP++ ++L
Sbjct: 538 HKDSVQIYDTLDMINKRLTEAGYVPDVSSVL 568
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 41/208 (19%)
Query: 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNL 107
SAC+ LG+ +H ++ G D+++ +ALV Y G + VF +L R +++
Sbjct: 159 SACSFLGS-----HVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213
Query: 108 FCWNSIIEGLA--------------------------VHGFAHE-----ALAMFDRMIYE 136
WN ++ G V G+ E AL +F M+ +
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLLE 195
V PN ++ LSA GL+E G +F+ S P + G +VD+ +K G +
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHG--KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVA 331
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLH 223
A E+ + + + W A++ G H
Sbjct: 332 VAREVFDGMR-RRDVFAWNAMICGLAAH 358
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW +M+ ++ N + +D FN MK +GI+PDQ TM +L AC G
Sbjct: 282 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + GF+ D+ I +AL+++YAK G L+ S +F ++++++ W +++ G AVH
Sbjct: 342 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 401
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA+ +FD M+ E VE + VTF +LSAC+H+GLVEEG++ F M+ Y + P ++H
Sbjct: 402 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 461
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL ++G LEDA ELI+S +P++ +WGALLG C+++ N+E+ +L+ L+
Sbjct: 462 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 521
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ +L N+Y+ W + +K+R MKE + R PG S+IE K+++F D+
Sbjct: 522 PSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRL-TRNPGCSFIEHGNKIHRFVVGDQL 580
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SDEI++ L +L +++ A P+ E +L
Sbjct: 581 HPRSDEIHTKLEELIRKIREAGCAPKTEFVL 611
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 11/228 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP +D++SW ++++ S L+AF M+ SG P++VT+ +V+SACA +GALD
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H V+++G + ++L++MY K G LD + +F ++ ++L WNS++
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 299
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEV 178
+G+A + + +F+ M + P+ T +++L ACT GL + + CG++ ++
Sbjct: 300 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN--ADI 357
Query: 179 EHYGCMVDLLSKAGLL---EDALELIRSSKFQPNAVIWGALLGGCKLH 223
+++L +K G L ED E I+ + + W A+L G +H
Sbjct: 358 IIATALLNLYAKLGRLNASEDIFEEIKDR----DRIAWTAMLAGYAVH 401
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ D +IG LV MY K G + + +F ++ K+L WNS++ GL+ G+
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200
Query: 123 AHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
L F RM E+ +PN VT +SV+SAC G ++EG + + ++ + +
Sbjct: 201 LGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG-KSLHGVVVKLGMSGKAKVV 259
Query: 182 GCMVDLLSKAGLLEDALELI 201
++++ K G L+ A +L
Sbjct: 260 NSLINMYGKLGFLDAASQLF 279
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 207/324 (63%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D SW+TM++ Y+QN Q EAL F EM+ +S D T+A+V+ C LGALDLG
Sbjct: 168 MPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG 227
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + G IDV +G+ALV MY+KCGSLD +L VF + E+++ W+++I G A+H
Sbjct: 228 KWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIH 287
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD M PN VTF SVLSAC+H+GLVE+G + F +M Y ITP+++H
Sbjct: 288 GHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKH 347
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG++ A + I++ +PN V+W LLG CK H ++ +++ L+
Sbjct: 348 YGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLD 407
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ L+ N+YA + RW+ V ++R MK+ +K+ G S IE+ V++F D+S
Sbjct: 408 PSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQ-HGWSSIEINFMVHKFIMGDES 466
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP ++IY L ++ +LK +V
Sbjct: 467 HPEREKIYGMLHQMARKLKQVGHV 490
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 2/225 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ W T+I YS + A+ + +M GISP+ T VL AC L L G+E+H
Sbjct: 71 NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++G D + + + L+ +YA CG +D + ++F ++ E + W++++ G A +G A
Sbjct: 131 SQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAV 190
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F M ENV + T SV+ C G ++ G+ M + +V +
Sbjct: 191 EALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMD-KEGVKIDVVLGTAL 249
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
V + SK G L++AL++ + + + W ++ G +H + E A
Sbjct: 250 VGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIHGHGEKA 293
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 7/182 (3%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLL 97
DQ ++ + C +G L + I ++++ D ++ S L++ A G + +
Sbjct: 6 DQGSLVAAIKRCTRVGDL---KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHR 62
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F NLF WN+II G ++ A+A++ M + PN TF VL AC
Sbjct: 63 IFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLR 122
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ EG + S + E ++ L + G ++ A + +P++ W ++
Sbjct: 123 LCEG-QELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMP-EPDSASWSTMV 180
Query: 218 GG 219
G
Sbjct: 181 SG 182
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 199/325 (61%), Gaps = 7/325 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +I Y+QN + EAL F +K + P T A +L ACA L L LG
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLG 405
Query: 61 REIHLYVMQIGFDI------DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
+ H++V++ GF D+++G++L+DMY KCG ++ LVF K+ E++ WN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G+ +EAL +F M+ +P+ +T I VLSAC HAG VEEGR F SMT + +
Sbjct: 466 IGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CMVDLL +AG LE+A +I QP++VIWG+LL CK+HRN+ +
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L +E +NSG LL NMYAE+ +W + +R M++ G+ K+ PG SWI++ + F
Sbjct: 586 KLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQ-PGCSWIKIPGHAHVF 644
Query: 295 AASDKSHPASDEIYSSLSKLDEQLK 319
DKSHP +I+S L L +++
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEMR 669
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 112/197 (56%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +W +M++ ++Q+ + EAL F M G ++ T A+ LSAC+ L ++ G
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRG 171
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH + + DVYIGSALVDMY+KCG+++ + VF ++ ++N+ WNS+I +
Sbjct: 172 VQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQN 231
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F M+ VEP+ VT SV+SAC ++ G+ + + ++
Sbjct: 232 GPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIIL 291
Query: 181 YGCMVDLLSKAGLLEDA 197
VD+ +K +++A
Sbjct: 292 SNAFVDMYAKCSRIKEA 308
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW ++ITCY QN EAL F M S + PD+VT+A+V+SACA L A+ +G
Sbjct: 213 MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVG 272
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKC------------------------------ 89
+E+H V+++ D+ + +A VDMYAKC
Sbjct: 273 QEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAM 332
Query: 90 -GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
S + L+F K+ E+N+ WN++I G +G EAL++F + E+V P TF ++
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANI 392
Query: 149 LSACTHAGLVEEGRRRFLS-MTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELIRS 203
L AC + G + + + G+ E ++D+ K G +E+ + R
Sbjct: 393 LKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR- 451
Query: 204 SKFQPNAVIWGALLGG 219
+ + V W A++ G
Sbjct: 452 KMMERDCVSWNAMIIG 467
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 42/235 (17%)
Query: 45 ATVLSACAHL--GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
A +L +C L A+D+ R +H V++ GF +V+I + L+D YAKCGSL+ +F K+
Sbjct: 23 AKLLDSCIKLKLSAIDV-RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81
Query: 103 REKNLFCWNSIIEGLA--------------------------VHGFAH-----EALAMFD 131
++N+F WNS++ GL V GFA EAL F
Sbjct: 82 PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSK 190
M E N TF S LSAC+ GL + R + S+ +V +VD+ SK
Sbjct: 142 MMHKEGFVLNEYTFASGLSACS--GLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSK 199
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPN 242
G + DA ++ N V W +L+ C + + V ++M+ +EP+
Sbjct: 200 CGNVNDAQQVFDEMG-DRNVVSWNSLI-TCYEQNGPAVEALKVFQVMLESWVEPD 252
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW MI Y +N EA++ ++ M+ G PD V++ +VL AC AL LG
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+ + ++ + +AL+DMYAKCG L+++ VF ++ +++ W ++I
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+A+F ++ + P+ + F++ L+AC+HAGL+EEGR F MT Y ITP +EH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVDLL +AG +++A I+ +PN +WGALLG C++H + +I +A ++L L
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SGY LL N+YA+ RW EVT IR MK G++K PG+S +E+ R ++ F D+S
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN-PGASNVEVNRIIHTFLVGDRS 567
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SDEIY L L +++K YVP+ E+ L
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESAL 598
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 29/271 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R++I MI Y N + E + F M + PD T VL AC+ G + +G
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++G +++G+ LV MY KCG L + LV ++ +++ WNS++ G A +
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEV 178
+AL + M + + T S+L A ++ V + F M ++
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVS--- 276
Query: 179 EHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRN 225
+ M+ + K + +A+EL + + F+P+AV ++L C K+H
Sbjct: 277 --WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY 334
Query: 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
+E + N ++LE L++MYA+
Sbjct: 335 IERKKLIPN--LLLE-------NALIDMYAK 356
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ + +G L+ YA + + VF ++ E+N+ N +I +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF E + +F M NV P+ TF VL AC+ +G + GR+ S T G S T V
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V + K G L +A L+ + + V W +L+ G
Sbjct: 179 N--GLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLVVG 215
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 205/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISW+T++ Y + ++ AL F M G+ P+Q + T LSA A LG L+ G
Sbjct: 239 MPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG 298
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V + G + + +G+ALVDMYAKCG + + VF +R +++F WN++I GLA H
Sbjct: 299 KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F+R I E + P VTF+ VL+ C+ +GLV EGRR F + Y I PE+EH
Sbjct: 359 GLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEH 418
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A+ELI P+ V+WG +L CK H +++ N+L+ L+
Sbjct: 419 YGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELD 478
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SGY LL +YA+ ++W EV ++R M G K G S +E KV++F D
Sbjct: 479 PTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSA-GWSLMEAHGKVHKFLVGDTY 537
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S +IY +L ++++L A YVP++ ++L
Sbjct: 538 HKDSVQIYDTLDMINKRLTEAGYVPDVSSVL 568
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 41/208 (19%)
Query: 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNL 107
SAC+ LG+ +H ++ G D+++ +ALV Y G + VF +L R +++
Sbjct: 159 SACSFLGS-----HVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDV 213
Query: 108 FCWNSIIEGLA--------------------------VHGFAHE-----ALAMFDRMIYE 136
WN ++ G V G+ E AL +F M+ +
Sbjct: 214 LTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQ 273
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLLE 195
V PN ++ LSA GL+E G +F+ S P + G +VD+ +K G +
Sbjct: 274 GVRPNQAAVVTALSAAARLGLLEHG--KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVA 331
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLH 223
A E+ + + + W A++ G H
Sbjct: 332 VAREVFDGMR-RRDVFAWNAMICGLAAH 358
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 207/323 (64%), Gaps = 2/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD + W +M+ Y+QN E++ EM +G+ P + T+ TV+S+ A + L GREI
Sbjct: 212 RDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREI 271
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + GF + + +AL+DMYAKCGS+ +L +F +LREK + WN+II G A+HG A
Sbjct: 272 HGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLA 331
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL +FD+M E+ P+ +TF+ VL+AC+ L++EGR + M Y ITP V+HY C
Sbjct: 332 VGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTC 390
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M+DLL G L++A +LIR+ +P++ +WGALL CK+H N+E+A +A+ +L+ LEP++
Sbjct: 391 MIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDD 450
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG +L NMYA+ +W V K+R M + I+K SWIE++ KVY F A D SH
Sbjct: 451 SGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNI-ACSWIEVKNKVYAFLAGDVSHSN 509
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
SD IY+ L +L+ + A Y P+
Sbjct: 510 SDAIYAELKRLEGLMHEAGYAPD 532
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +++ W +I Y+ N A+ +++M + G+ PD T+ VL AC+ L A+ G
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV++ G++ D+++G+AL+DMYAKCG + + VF K+ ++ WNS++ A +
Sbjct: 168 RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQN 227
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G E++++ M V P T ++V+S+ + GR G+ +V+
Sbjct: 228 GHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVK 287
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G ++ AL L + + V W A++ G +H
Sbjct: 288 --TALIDMYAKCGSVKVALALFERLR-EKRVVSWNAIITGYAMH 328
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 8/186 (4%)
Query: 39 PDQVTM----ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDR 94
P Q T ++L +C AL+ G+++H +G + + + LV +YA SL
Sbjct: 41 PPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLN 100
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F K+ ++NLF WN +I G A +G A+ ++ +M+ + P+ T VL AC+
Sbjct: 101 ARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSA 160
Query: 155 AGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+ EGR + G+ V ++D+ +K G + DA + + +AV+W
Sbjct: 161 LSAIGEGRSIHEYVIKSGWERDLFVG--AALIDMYAKCGCVMDAGRVFDKIVVR-DAVLW 217
Query: 214 GALLGG 219
++L
Sbjct: 218 NSMLAA 223
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 198/315 (62%), Gaps = 1/315 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +ISW M++ Y+QN L+ + M +G+ PD VT+ VLS+CA+LGA +G
Sbjct: 213 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG 272
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ + GF + ++ +AL++MYA+CG+L ++ VF + E+ L W +II G +H
Sbjct: 273 HEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMH 332
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +F MI +EP+G F+ VLSAC+HAGL ++G F M Y + P EH
Sbjct: 333 GHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEH 392
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L++A LI S +P+ +WGALLG CK+H+N+E+A +A ++ LE
Sbjct: 393 YSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELE 452
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY LL N+Y+ + V +IR+ MKE ++K PG S++E++ +V+ F D++
Sbjct: 453 PENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKD-PGCSYVELKGRVHPFIVGDRN 511
Query: 301 HPASDEIYSSLSKLD 315
H SDEIY L +L+
Sbjct: 512 HLQSDEIYRVLEELE 526
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 6/247 (2%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + +++ Y N + EA+ F +M G+ + VT+ ++ AC L+LG +H
Sbjct: 118 VCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS 177
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ GFD DV + + + MY KCGS++ + +F ++ K L WN+++ G A +G A
Sbjct: 178 TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNV 237
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
L ++ M V P+ VT + VLS+C + G G F G++ P + + ++
Sbjct: 238 LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALI 295
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNN 243
++ ++ G L A + + + V W A++GG +H + EIA E++ +EP+
Sbjct: 296 NMYARCGNLTKA-QAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 354
Query: 244 SGYCTLL 250
+ + +L
Sbjct: 355 TAFVCVL 361
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 6/214 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W T + ++ QF +AL + +M G P+ T L +CA L LG + H +
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVF---FKLREKNLFCWNSIIEGLAVHGFAHE 125
++G + ++ + L+ MY K +D + VF F R K C+N+++ G + E
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSR-KLTVCYNALVSGYVSNSKCSE 135
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ +F +M E V N VT + ++ AC +E G S T Y +V C +
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFI 194
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ K G + A +L + + W A++ G
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSG 227
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 216/331 (65%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ W ++I ++Q+ A++ F MK++G S +Q T+ +VL AC + L+ G
Sbjct: 240 MVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAG 299
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V++ ++ D+ + +AL+DMY KCGSL+ + +F ++ ++++ W+++I GLA +
Sbjct: 300 RQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQN 357
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +FD M E V PN +T + VL AC+HAGLVE+G F SM + I PE EH
Sbjct: 358 GKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREH 417
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDLL +AG L++A+E IR +P+AVIW LLG C++H++ +A A E++ LE
Sbjct: 418 HNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLE 477
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G LL N YA++ +W + K AM++ G++K PG SWIE+E+ V+ F A D S
Sbjct: 478 PDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKE-PGRSWIELEKHVHVFIAGDLS 536
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SD I L++L ++ YVP+ E +L
Sbjct: 537 HPCSDTIVQELNRLIGRISALGYVPQTEFVL 567
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 1 MPARDIISWTTMITCYSQ-NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP R++++WTT++ + + + EAL M G++P+ T ++VL AC G L
Sbjct: 141 MPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVL-- 198
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H +++G D DV++ S+L+D Y K G LD VF ++ ++L WNSII G A
Sbjct: 199 -AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQ 257
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+ +F RM N T SVL ACT ++E GR+ + ++
Sbjct: 258 SGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV---LKYERDLI 314
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++D+ K G LEDA L Q + + W ++ G
Sbjct: 315 LHNALLDMYCKCGSLEDAEALFHRMP-QRDVISWSTMISG 353
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYV--------MQIGFDIDVYIGSALVDMYAKCGS 91
D V++ ++ C G GR IH +V G +++ ++LV MYAK G
Sbjct: 71 DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLA-VHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
LD +L +F ++ E+N+ W +++ LA G EAL M + V PN TF SVL
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
AC G++ + T + +V ++D K G L D + +
Sbjct: 191 ACGTPGVLAA----LHASTVKVGLDSDVFVRSSLIDAYMKLGDL-DGGRRVFDEMVTRDL 245
Query: 211 VIWGALLGG 219
V+W +++ G
Sbjct: 246 VVWNSIIAG 254
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 204/326 (62%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SWTTMI +SQN +AL F M G+ P+ +T+ + L AC +GAL +G
Sbjct: 265 MPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG 324
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ GF ++ IG+ALVDMYAKCG++ + VF + + K+L W+ +I G A+H
Sbjct: 325 ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIH 384
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F +M + P+ V F+++L+AC+H+G V++G F SM YSI P ++H
Sbjct: 385 GCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKH 444
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y +VDLL +AG L++AL I+S P+ VIWGAL C+ H+N+E+A + +L+ LE
Sbjct: 445 YTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLE 504
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G L N+YA V RW +V ++R MK G+EK PG S+IE+E +V+ F A D +
Sbjct: 505 PKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKD-PGWSYIEVEGQVHSFVAGDHA 563
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
H ++EI L ++ K Y+PE
Sbjct: 564 HVRAEEISLKLEEITASAKQEGYMPE 589
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 75/288 (26%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + +I ++N +F ++ F M I PD++T+ VL + A L + LGR +H
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLH 161
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
VM++G + D ++ +LVDMY K G L L +F +
Sbjct: 162 GGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV 221
Query: 102 ------------LREKNLFCWNSIIEGLA--------------------------VHGFA 123
+ E+N WNS+I G ++GF+
Sbjct: 222 GDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFS 281
Query: 124 ----HE-ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITP 176
HE AL+MF RM+ E V PN +T +S L ACT G ++ G R +LS + G+ +
Sbjct: 282 QNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLS-SNGFQLNR 340
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQP----NAVIWGALLGGC 220
+ +VD+ +K G ++ A + +K + + +IWG + GC
Sbjct: 341 GIG--TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGC 386
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH + + + + L+ SLD +L +F NLF +N++I GLA +
Sbjct: 58 QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS---MTCGYSITPEV 178
+++ F M+ ++ P+ +T VL + A LV+ G R L M G V
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV--AALVDVGLGRCLHGGVMKLGLEFDSFV 175
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNA---VIWGALLGGC 220
+VD+ K G L L+L S + A ++W L+ GC
Sbjct: 176 R--VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGC 218
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 214/325 (65%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ARD+I++ +MIT Y + + R+AL F +M+ G+ D T+ ++L+ACA LGAL G
Sbjct: 330 MGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHG 389
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + Q + DVY+G+AL+DMY KCG +D + VF ++ E+++ W ++I GLA +
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F +M + +P VT+I+VL+AC+H+ L++EGR F M + + P+VEH
Sbjct: 450 GMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEH 509
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL+++GLL++A+ L+++ QPNAVIWG++L C++H+N+++A A L+ L
Sbjct: 510 YGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLA 569
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P L N+Y + +WA+ ++R+ M+E G+ K+ G S I + +V++F A+D+S
Sbjct: 570 PEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGV-KKTAGYSSITVAGQVHKFVANDQS 628
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + EI + + ++ +LK Y P
Sbjct: 629 HPWTLEIMAMMEEIACRLKSVGYSP 653
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 134/276 (48%), Gaps = 37/276 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R+++SWT++I YS+ + +A+ FN M + G++PD+V + LSAC+ L LDLGR
Sbjct: 198 PERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGR 257
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+HL V Q + + AL+DMYAKCG + ++ VF + R + WN+II+G
Sbjct: 258 LLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKL 317
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ++FD+M +V +TF S+++ H+G + + + F+ M
Sbjct: 318 GHVDVARSLFDQMGARDV----ITFNSMITGYIHSGRLRDALQLFMQM----------RR 363
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+G D + LL L GAL G LH ++E + ++ E
Sbjct: 364 HGMRADNFTVVSLLTACASL-------------GALPHGRALHASIE-------QRIVEE 403
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
G T LL+MY + R E T + M E +
Sbjct: 404 DVYLG--TALLDMYMKCGRVDEATAVFHRMGERDVH 437
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D + + ++ + G LD + + + E+N+ W S+I G + G +A+ F+ M+
Sbjct: 170 DAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCML 229
Query: 135 YENVEPNGVTFISVLSACTH--------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ V P+ V I LSAC+ + G++R + MT + ++D
Sbjct: 230 SDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKR-IRMTDNLVVA--------LID 280
Query: 187 LLSKAGLLEDALELI----RSSKFQPNAVIWGALLGG-CKL 222
+ +K G + A + R K +P W A++ G CKL
Sbjct: 281 MYAKCGDIAQAQAVFDAVGRGQKPEP----WNAIIDGYCKL 317
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 202/318 (63%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+I+SW MI+CY Q + E LD +N M++ GI+PD+ T+A VLSAC G L G
Sbjct: 307 MPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASG 366
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH YV D V + ++L+DMYA+CG +D ++ +F ++ KN+ WN II LA+H
Sbjct: 367 KMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMH 426
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A E + F M+ + P+ +TF+ +LSAC+H GL+E G F +M Y++ PEVEH
Sbjct: 427 GRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEH 486
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G L A+ LI+ +P+ V+WGALLG C++H N+EI + + +L+ LE
Sbjct: 487 YGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELE 546
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
G L+ N++ E ++W ++ K+R MKE G +K G S IE++ +++F D
Sbjct: 547 GITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDM-GVSSIEVKNIIHEFGVEDLR 605
Query: 301 HPASDEIYSSLSKLDEQL 318
H +++EIY+++ +L L
Sbjct: 606 HESTNEIYAAVDQLSYHL 623
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 33/254 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW TMI Y+Q + EA F EM++ G+ D T+ ++L AC+ G L++G
Sbjct: 175 MADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVG 234
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
R +H +++ G +D +G+AL+DMY KC
Sbjct: 235 RLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKH 294
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
GS+D F ++ E+N+ WN++I G HE L +++RM + P+ T VL
Sbjct: 295 GSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVL 354
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC G + G+ + ++ P V ++D+ ++ G ++ A+ L + N
Sbjct: 355 SACGQNGDLASGKMIHCYVRDNFN-DPGVTLLNSLLDMYARCGQVDTAIGLF-TEMPNKN 412
Query: 210 AVIWGALLGGCKLH 223
+ W ++G +H
Sbjct: 413 VISWNVIIGALAMH 426
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 11/278 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + T++ YS + +EAL + GI P++ T+ VL AC + A++
Sbjct: 74 IPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHA 133
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H V+++GF +++ +AL+ +A GSL S F ++ ++N+ WN++I G A
Sbjct: 134 LAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQA 193
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA A+F M ++ + + T +S+L AC+ G +E GR M S +
Sbjct: 194 GEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILG 253
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++D+ K G D R P N V W ++L H +++ AV +
Sbjct: 254 -NALLDMYGKCG---DLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVD----AVRDWFE 305
Query: 239 LEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
P N +++ Y + R E + M+ LGI
Sbjct: 306 QMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGI 343
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 11/179 (6%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDR------SLLVFF 100
+L C + LD +IH +++ GF + S L+ Y + DR + +F
Sbjct: 16 LLRQCRSIQHLD---QIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFD 72
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
++ E + F +N+++ + EAL + ++ + PN T VL ACT VE
Sbjct: 73 RIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEH 132
Query: 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ ++ + AG L D+ N V W ++GG
Sbjct: 133 ALAAH-GVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFF-GEMADRNVVSWNTMIGG 189
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 209/322 (64%), Gaps = 2/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP +++ SWTT+I+ +SQN + EAL F M K+ + P+ +T+ +VL ACA+LG L++
Sbjct: 167 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 226
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR + Y + GF ++Y+ +A ++MY+KCG +D + +F +L ++NL WNS+I LA
Sbjct: 227 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 286
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL +F +M+ E +P+ VTF+ +L AC H G+V +G+ F SM + I+P++
Sbjct: 287 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKL 346
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL + G L++A +LI++ +P+AV+WG LLG C H N+EIA IA L
Sbjct: 347 EHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFK 406
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G C ++ N+YA +W V ++R MK+ + K S ++E+ V++F D
Sbjct: 407 LEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVED 466
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
KSHP S EIY L ++ ++KL
Sbjct: 467 KSHPRSYEIYQVLEEIFRRMKL 488
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I Y + Q E++ +N + G+ P T + +A A + R +H
Sbjct: 43 YNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFF 102
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF+ D + + L+ YAK G+L + VF ++ ++++ WN++I G G A+
Sbjct: 103 RSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAME 162
Query: 129 MFDRMIYEN--------------------------------VEPNGVTFISVLSACTHAG 156
+FD M +N V+PN +T +SVL AC + G
Sbjct: 163 LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLG 222
Query: 157 LVEEGRRRFLSMTCGYS----ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+E GRR GY+ + +++ SK G+++ A L Q N
Sbjct: 223 ELEIGRR-----LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCS 277
Query: 213 WGALLGGCKLH 223
W +++G H
Sbjct: 278 WNSMIGSLATH 288
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 206/325 (63%), Gaps = 3/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W+TMI Y++N Q +AL+ F K I PD+ + ++SAC+ LG +D
Sbjct: 225 MPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAA 284
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
I H YV D+ + ++L+DMYAKCGS++++L +F K+L C++++I LA
Sbjct: 285 ESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALAN 343
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+ +FD+M N++P+ VTF+ VL+AC H GLV+EGR+ F MT + I P +
Sbjct: 344 HGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEK 403
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL + G LE+A LIR+ P++V+WGALL C++H N+++A +A EL +
Sbjct: 404 HYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKI 463
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YA RW V K+R ++E + K GSSWIE+ V++F D
Sbjct: 464 EPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKN-RGSSWIELSHVVHEFVMGDM 522
Query: 300 SHPASDEIYSSLSKLDEQLKLASYV 324
SH SD I L L E +KL+ Y+
Sbjct: 523 SHTDSDSISLILYLLCEDMKLSGYL 547
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI+SW MI+ Y N + A F+ M P++ ++ C ++ A D+
Sbjct: 131 MCEKDIVSWNMMISGYGNNDRVDIARKFFDRM------PERNVVSWTSMICGYVKAGDMA 184
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFF-KLREKNLFCWNSIIE 115
Q+ FD D+ + +V Y G F ++ KNL W+++I
Sbjct: 185 EA------QVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIG 238
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G A +G +AL +F+R ++++P+ + ++SAC+ G+++ + G S+
Sbjct: 239 GYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAA-ESIIHNYVGPSLL 297
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELI 201
++ + ++D+ +K G +E AL++
Sbjct: 298 SDLRVFTSLIDMYAKCGSIEKALQMF 323
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
WT++I Y +N+Q+ EA F +M+ IS T+++VL A A L G+ ++ +
Sbjct: 69 WTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAF 128
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ D+ + ++ Y +D + F ++ E+N+ W S+I G G EA
Sbjct: 129 DEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQV 188
Query: 129 MFDRM 133
+FD M
Sbjct: 189 LFDSM 193
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + L+ +Y++ G+ D + VF ++ + N + W S+I G + EA ++F +M E
Sbjct: 36 FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95
Query: 137 NVEPNGVTFISVLSA 151
+ T SVL A
Sbjct: 96 PISVLNFTISSVLKA 110
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 203/326 (62%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWTT++ Y+ Q E+ F +M G+ +++T VL AC++ AL G
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWG 451
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH V++ G D+ + +AL+ MY KCGS++ ++ VF + +++ WN++I GL +
Sbjct: 452 KEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQN 511
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL ++ M E + PN TF++VLSAC LVEEGRR+F M+ Y I P +H
Sbjct: 512 GRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKH 571
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L++AG L +A ++I + +P+A +WGALL C++H N+EI A + LE
Sbjct: 572 YACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLE 631
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G L +YA W +V K+R MKE G++K PG SWIE+ +V+ F A D+S
Sbjct: 632 PQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKE-PGRSWIEIAGEVHSFVARDQS 690
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP + EIY+ L L +Q+K YVP+
Sbjct: 691 HPRTQEIYAELETLKKQMKSLGYVPD 716
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SWTT+ Y+++ E+L ++ M + P ++T VLSAC L AL+ G
Sbjct: 190 MASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG 249
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++++ + DV + +AL MY KCG+ + VF L +++ WN++I G
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDS 309
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA F RM+ E V P+ T+ +VLSAC G + G + + + +V
Sbjct: 310 GQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRF 368
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
++++ SKAG ++DA ++ + + V W LLG
Sbjct: 369 GNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 4/249 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW MI+ Y+ +EA + F M+ + PD+ T ++LSAC+ L+ GREI
Sbjct: 92 KSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREI 151
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H+ VM+ G D +G+AL+ MYAKCGS+ + VF + ++ W ++ A G+
Sbjct: 152 HVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYG 211
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
E+L + M+ E V P+ +T+++VLSAC +E+G ++ + +V
Sbjct: 212 EESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG-KQIHAHIVESEYHSDVRVSTA 270
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEP 241
+ + K G +DA E+ ++ + + W ++ G LE AH + ++ + P
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAP 329
Query: 242 NNSGYCTLL 250
+ + Y T+L
Sbjct: 330 DRATYTTVL 338
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 22/258 (8%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+I+W TMI + + Q EA F+ M G++PD+ T TVLSACA G L G+EI
Sbjct: 294 RDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI 353
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G DV G+AL++MY+K GS+ + VF ++ ++++ W +++ A
Sbjct: 354 HARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQV 413
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
E+ F +M+ + V+ N +T++ VL AC++ +++ G I EV G
Sbjct: 414 VESFTTFKQMLQQGVKANKITYMCVLKACSNP----------VALKWGKEIHAEVVKAGL 463
Query: 184 MVDLLS---------KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE-IAHIA 232
+ DL K G +EDA+ + + + V W L+GG + R LE +
Sbjct: 464 LADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLGQNGRGLEALQRYE 522
Query: 233 VNELMILEPNNSGYCTLL 250
V + + PN + + +L
Sbjct: 523 VMKSEGMRPNAATFVNVL 540
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 4/193 (2%)
Query: 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86
D + G D +L +C L +G+++H ++++ G +VYI + L+ +Y
Sbjct: 14 DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A CGS++ + +F K K++ WN +I G A G A EA +F M E +EP+ TF+
Sbjct: 74 AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133
Query: 147 SVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
S+LSAC+ ++ GR + M G + V + ++ + +K G + DA + +
Sbjct: 134 SILSACSSPAVLNWGREIHVRVMEAGLANDTTVGN--ALISMYAKCGSVRDARRVFDAMA 191
Query: 206 FQPNAVIWGALLG 218
+ + V W L G
Sbjct: 192 SR-DEVSWTTLTG 203
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 208/320 (65%), Gaps = 2/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++S++ M+ Y + +FREAL+ F E+ + I P + +VL ACA+LGALD+G
Sbjct: 179 MPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVG 238
Query: 61 REIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R ++ +V D +D I +AL+DM+ KCGS++ +LLVF +EK++ W +++ GLA+
Sbjct: 239 RWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAM 298
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + + F++M+ ++P+ VTF+++LS C+H+GLV EG F M + + P VE
Sbjct: 299 HGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVE 358
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GC+VDLL +AGL++ A++LI F+PNA IWGALL C++++N+E+ +A L+
Sbjct: 359 HFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKD 418
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N LL++Y E RW EV K+++ MKE+G K PG S IE+ Y+F DK
Sbjct: 419 EPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKG-PGCSLIEVGGICYEFVVGDK 477
Query: 300 SHPASDEIYSSLSKLDEQLK 319
SHP + EI +LSK + + K
Sbjct: 478 SHPCAVEICLNLSKANMEFK 497
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 36/248 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM Y+ + AL M G PD T +L AC+ L L G+E+H +
Sbjct: 55 YNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQAL 114
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA---------- 118
+ G V++ ++L+ +Y +D + VF + +++ W +++ A
Sbjct: 115 KFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARK 174
Query: 119 --------------------VHGFA-HEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
V G EAL +F + +EP+ +SVL AC + G
Sbjct: 175 VFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGA 234
Query: 158 VEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
++ GR F+ + G + + ++D+ K G +E AL + +K + + W A
Sbjct: 235 LDVGRWVYSFVCHSKGDYVDSRIA--TALIDMFFKCGSIEHALLVFEGAK-EKHVGEWTA 291
Query: 216 LLGGCKLH 223
+L G +H
Sbjct: 292 MLSGLAMH 299
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 206/325 (63%), Gaps = 3/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W+TMI Y++N Q +AL+ F K I PD+ + ++SAC+ LG +D
Sbjct: 317 MPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAA 376
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
I H YV D+ + ++L+DMYAKCGS++++L +F K+L C++++I LA
Sbjct: 377 ESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALAN 435
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+ +FD+M N++P+ VTF+ VL+AC H GLV+EGR+ F MT + I P +
Sbjct: 436 HGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEK 495
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL + G LE+A LIR+ P++V+WGALL C++H N+++A +A EL +
Sbjct: 496 HYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKI 555
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YA RW V K+R ++E + K GSSWIE+ V++F D
Sbjct: 556 EPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKN-RGSSWIELSHVVHEFVMGDM 614
Query: 300 SHPASDEIYSSLSKLDEQLKLASYV 324
SH SD I L L E +KL+ Y+
Sbjct: 615 SHTDSDSISLILYLLCEDMKLSGYL 639
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 31/237 (13%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
WT++I Y +N+Q+ EA F +M+ IS T+++VL A A L G+ ++ +V+
Sbjct: 69 WTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVL 128
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF D+ + ++++D++ +C +D + F ++ EK++ WN +I G + A
Sbjct: 129 KYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARK 188
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC------------------ 170
FDRM NV V++ S++ AG + E + F SM
Sbjct: 189 FFDRMPERNV----VSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGD 244
Query: 171 --------GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G + + M+ KAG LE A + N + WG +L G
Sbjct: 245 CVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMP-NKNVISWGIMLDG 300
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSA--CAH----L 54
MP R+++SWT+MI Y + EA F+ M ++ V ++ + C +
Sbjct: 193 MPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIF 252
Query: 55 GALDLGREIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLDRSLL 97
G + + +M GF + +V ++D Y K G + +
Sbjct: 253 GKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARC 312
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F ++ KNL W+++I G A +G +AL +F+R ++++P+ + ++SAC+ G+
Sbjct: 313 LFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGI 372
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
++ + G S+ ++ + ++D+ +K G +E AL++
Sbjct: 373 IDAA-ESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMF 415
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + L+ +Y++ G+ D + VF ++ + N + W S+I G + EA ++F +M E
Sbjct: 36 FVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRRE 95
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
+ T SVL A R G ++ V YG DL+ + +L+
Sbjct: 96 PISVLNFTISSVLKALA----------RLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLD 144
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 214/334 (64%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M+T ++QN + +EAL+ F+ M+ SGI D+VT+A +SACA LGA
Sbjct: 242 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 301
Query: 61 REIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ G+ V IGSAL+DMY+KCG+++ ++ VF + KN+F ++S+I GLA
Sbjct: 302 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLA 361
Query: 119 VHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
HG A EAL +F M+ + ++PN VTF+ L+AC+H+GLV++GR+ F SM + + P
Sbjct: 362 THGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPT 421
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+HY CMVDLL +AG L++ALELI++ +P+ +WGALLG C++H N +IA IA L
Sbjct: 422 RDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLF 481
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSW-IEMERKVYQFAA 296
LEP+ G LL N+Y+ W V +R +KE G+ K+ P SW ++ ++++F
Sbjct: 482 ELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGL-KKTPAVSWVVDKNGQMHKFFP 540
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
+ +HP S +I L +L E+L Y P+L ++
Sbjct: 541 GNLNHPMSKKIQDKLEELVERLTALGYQPDLSSV 574
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 38/283 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ WT +I Y+ +F EA+ + M+ I+P T + +L AC +G L+LGR+
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H ++ VY+G+ ++DMY KCGS+ + VF ++ E+++ W +I A
Sbjct: 173 HAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNM 232
Query: 119 ---------------------VHGFA-----HEALAMFDRMIYENVEPNGVTFISVLSAC 152
V GFA EAL FDRM + + VT +SAC
Sbjct: 233 ESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 292
Query: 153 THAGLVEEGRRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS----SKFQ 207
G + R ++ GYS + V ++D+ SK G +E+A+ + S + F
Sbjct: 293 AQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFS 352
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL 250
+++I G G + L++ H V + I +PN + L
Sbjct: 353 YSSMILGLATHG-RAQEALDLFHYMVTQTAI-KPNTVTFVGAL 393
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-SLDR-SLLVFF 100
++ + L C +L + ++IH +V++ G D YI + L+ K G +D V
Sbjct: 52 SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIE 108
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
++ +N F W ++I G + G EA+AM+ M E + P TF ++L AC G +
Sbjct: 109 PVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNL 168
Query: 161 GRR 163
GR+
Sbjct: 169 GRQ 171
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 210/340 (61%), Gaps = 10/340 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI +Q + ++AL F+EM+ +G+ DQV + LSACA LG L LG
Sbjct: 227 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLG 286
Query: 61 REIHLYV---MQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
IH Y+ + G + V + ++L+ MYA CG +D++ VF +++++ W S+I G
Sbjct: 287 TWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITG 346
Query: 117 LAVHGFAHEALAMFD---RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
A G A EAL +F R+ + P+G+TFI VL AC+HAG V++GR F M +
Sbjct: 347 FAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWG 406
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA-HIA 232
I P +EHYGCMVDLLS+AG L++A L S +PN +WGALLGGC++H+N E+A H+A
Sbjct: 407 IVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVA 466
Query: 233 VNELMILEPNN-SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKV 291
++ L+P+ +GY LL N+YA RW +V +R M E+G+ K G SW+++ V
Sbjct: 467 QKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKP-AGRSWVQINGVV 525
Query: 292 YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ F A D +H + +Y LSK+ Q KL Y ++ +L
Sbjct: 526 HDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEVL 565
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI +SQ++ + ++ +N M + P++ T + ++ CA L G ++H V+
Sbjct: 100 WNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVV 159
Query: 69 QIGFDIDVYIGSALVDMYA----------------------------------KCGSLDR 94
G+ +V++ ++LV++YA +CG +D
Sbjct: 160 ANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDG 219
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+ +F ++ E+N+ W ++I G A G +AL +F M V+ + V ++ LSAC
Sbjct: 220 ARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAE 279
Query: 155 AGLVEEG 161
G ++ G
Sbjct: 280 LGDLKLG 286
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 15/212 (7%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ GF ++ L+ Y G+L + VF ++ + WN +I G +
Sbjct: 51 KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQS 110
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITPEVE 179
H+ + +++RM+ EPN T+ ++ C + L+ EG + + GY V
Sbjct: 111 ETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVR 170
Query: 180 HYGCMVDLLSKAGLLEDALELIR--SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL- 236
+V+L + AG + + R N V W +LL G +++ A +E+
Sbjct: 171 --TSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP 228
Query: 237 ---------MILEPNNSGYCTLLLNMYAEVSR 259
MI G C L+++ E+ R
Sbjct: 229 ERNVVSWTTMIAGCAQIGRCKQALHLFHEMRR 260
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 218/334 (65%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SWT MI CY++N++ +A+ F EM + + P+ VT+ +L A A + AL
Sbjct: 246 MPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALG 305
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGL 117
G+ +H Y+++ GFD V + +AL+ MY KCG L+ +F + K++ WN++I G
Sbjct: 306 QGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGY 365
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+HGF HEA+ +F+ M V PN +TFISVL AC+HAGLV+EG+R F SM Y++TP
Sbjct: 366 GMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMV-DYNVTPR 424
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
EHY CMVDLL +AG L++A+ELI+ +P+ +WG+LLG C++HR++E A +A ++L
Sbjct: 425 AEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLF 484
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
LEP N+G LL ++YA +EV ++ ++E +EK PG SWIE++++++ F +
Sbjct: 485 DLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEK-VPGCSWIEVKKRLHMFVSV 543
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D +P +E+ + + + Q+K YVP+ A+L
Sbjct: 544 DNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVL 577
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 24/237 (10%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-----AHLGA 56
P + I W ++ + EAL +M + D + A L AC +H+ A
Sbjct: 141 PVKSIFVWNALLKALALADHGEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPA 200
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
L REIH + ++ G+ + ++ + L+D YAK G + + VF + E+N+ W ++I
Sbjct: 201 SALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGC 260
Query: 117 LAVHGFAHEALAMFDRMIY--ENVEPNGVTFISVLSACTHAGLVEEG--------RRRFL 166
A + +A+ +F M+ E++ PN VT + +L A + +G RR F
Sbjct: 261 YAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFD 320
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
S+ V ++ + K G LE + + + V W L+ G +H
Sbjct: 321 SL---------VSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMH 368
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F D ++ + L+D YA G L + VF + K++F WN++++ LA+ EALA
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLA 169
Query: 132 RMIYENVEPNGVTFISVLSACTHA--------GLVEEGRRRFLSMTCGYSITPEVEHYGC 183
M V + ++ L AC A LV E ++ GY + V
Sbjct: 170 DMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAH--AVRRGYGLHTHVA--TT 225
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
++D +K G++ A E + ++ + N V W A++G
Sbjct: 226 LIDCYAKLGIVSYA-ESVFATMPERNVVSWTAMIG 259
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 209/322 (64%), Gaps = 2/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP +++ SWTT+I+ +SQN + EAL F M K+ + P+ +T+ +VL ACA+LG L++
Sbjct: 174 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR + Y + GF ++Y+ +A ++MY+KCG +D + +F +L ++NL WNS+I LA
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL +F +M+ E +P+ VTF+ +L AC H G+V +G+ F SM + I+P++
Sbjct: 294 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKL 353
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL + G L++A +LI++ +P+AV+WG LLG C H N+EIA IA L
Sbjct: 354 EHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFK 413
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G C ++ N+YA +W V ++R MK+ + K S ++E+ V++F D
Sbjct: 414 LEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVED 473
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
KSHP S EIY L ++ ++KL
Sbjct: 474 KSHPRSYEIYQVLEEIFRRMKL 495
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I Y + Q E++ +N + G+ P T + +A A + R +H
Sbjct: 50 YNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFF 109
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF+ D + + L+ YAK G+L + VF ++ ++++ WN++I G G A+
Sbjct: 110 RSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAME 169
Query: 129 MFDRMIYEN--------------------------------VEPNGVTFISVLSACTHAG 156
+FD M +N V+PN +T +SVL AC + G
Sbjct: 170 LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLG 229
Query: 157 LVEEGRRRFLSMTCGYS----ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+E GRR GY+ + +++ SK G+++ A L Q N
Sbjct: 230 ELEIGRR-----LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCS 284
Query: 213 WGALLGGCKLH 223
W +++G H
Sbjct: 285 WNSMIGSLATH 295
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 211/333 (63%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS--PDQVTMATVLSACAHLGALD 58
MP ++ +SW+ MI C+++N+ +AL+ F M + P+ VTM +L ACA L AL+
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALE 303
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ IH Y+++ D + + +AL+ MY +CG + VF ++++++ WNS+I
Sbjct: 304 QGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYG 363
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HGF +A+ +F+ MI++ V P+ ++FI+VL AC+HAGLVEEG+ F SM Y I P +
Sbjct: 364 MHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGM 423
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L +A++LI F+P +WG+LLG C++H N+E+A A L
Sbjct: 424 EHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFE 483
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W+E + ++ G++K PG SWIE++RKVY F + D
Sbjct: 484 LEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQK-LPGCSWIEVKRKVYSFVSVD 542
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P +EI++ L KL ++K YVP+ +L
Sbjct: 543 EHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVL 575
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 17/216 (7%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
+P Q T ++ +CA +L G ++H ++ GFD D ++ + L++MY + GS+DR+L
Sbjct: 75 NPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALK 134
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + RE+ ++ WN++ LA+ G E L ++ +M + + T+ VL AC + L
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSEL 194
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELIRSSKFQP 208
R+ G I + +G ++D+ +K G + A + + +
Sbjct: 195 SVCPLRK------GKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK- 247
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
N V W A++ C + + + + +LM+ E NS
Sbjct: 248 NFVSWSAMI-ACFAKNEMPMKALELFQLMMFEACNS 282
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW MI Y +N EA++ ++ M+ G PD V++ +VL AC AL LG
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+ + ++ + +AL+DMYAKCG L+++ VF ++ +++ W ++I
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+A+F ++ + P+ + F++ L+AC+HAGL+EEGR F MT Y ITP +EH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVDLL +AG +++A I+ +PN +WGALLG C++H + +I +A ++L L
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SGY LL N+YA+ RW EVT IR MK G++K PG+S +E+ R ++ F D+S
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN-PGASNVEVNRIIHTFLVGDRS 567
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SDEIY L L +++K YVP+ E+ L
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESAL 598
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 29/271 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R++I MI Y N + E + F M + PD T VL AC+ G + +G
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++G +++G+ LV MY KCG L + LV ++ +++ WNS++ G A +
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEV 178
+AL + M + + T S+L A ++ V + F M +
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG-----KKSL 274
Query: 179 EHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRN 225
+ M+ + K + +A+EL + + F+P+AV ++L C K+H
Sbjct: 275 VSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY 334
Query: 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
+E + N ++LE L++MYA+
Sbjct: 335 IERKKLIPN--LLLE-------NALIDMYAK 356
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ + +G L+ YA + + VF ++ E+N+ N +I +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF E + +F M NV P+ TF VL AC+ +G + GR+ S T G S T V
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V + K G L +A L+ + + V W +L+ G
Sbjct: 179 N--GLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLVVG 215
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 212/330 (64%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F +M SG P+ VTM ++LSACAHLGA+D+GR I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G + ++L+DMYAKCG ++ + VF + ++L WN++I G A+HG
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A+ A +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SMT Y + P++EHY
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DL +GL ++A ++I + + +P+ VIW +LL CK+H N+E+ L+ +EP
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 538
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N G LL N+YA RW EV K R + + G+ K+ PG S IE++ V++F DK H
Sbjct: 539 ENPGSYVLLSNIYATAERWNEVAKTRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGDKFH 597
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 598 PRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW I+ Y++ ++EAL+ F +M + + PD+ TM TVLSACA G+++LG
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ GF ++ I +AL+D+Y+KCG L+ + +F L K++ WN++I G
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ +PN VT +S+LSAC H G ++ GR +R +T S
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ S + W A++ G +H
Sbjct: 375 LRTS------LIDMYAKCGDIEAAQQVF-DSMLNRSLSSWNAMIFGFAMH 417
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 41/296 (13%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ W TM ++ + AL + M + G+ P+ T +L +CA A G+++H
Sbjct: 68 LLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHG 127
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV--------------------------- 98
V++ GFD+D+YI ++L+ MY + G L+ + V
Sbjct: 128 QVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIES 187
Query: 99 ----FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
F ++ K++ WN+ I G A G EAL +F +M+ NV P+ T ++VLSAC
Sbjct: 188 AHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQ 247
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
+G +E G R+ S + ++ ++DL SK G LE A L + + + W
Sbjct: 248 SGSIELG-RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS-NKDVISWN 305
Query: 215 ALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ T+L + A ++ RW V
Sbjct: 306 TLIGGYT-HMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHV 360
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 113/262 (43%), Gaps = 21/262 (8%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD---MYAKCGSLDRSLLVFFKL 102
++L C L +L R IH +++ G Y S L++ + L ++ VF +
Sbjct: 7 SLLHXCKTLQSL---RIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+E L WN++ G A+ AL ++ M+ + PN TF +L +C + +EG
Sbjct: 64 QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEG- 122
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
++ + ++ + ++ + + G LEDA ++ S + + V + AL+ G
Sbjct: 123 QQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR-DVVSYTALITGYAS 181
Query: 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE------ 276
+E AH +E+ + + + ++ YAE + E ++ M + +
Sbjct: 182 RGXIESAHKMFDEIPVKDVVS---WNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238
Query: 277 ----KRCPGSSWIEMERKVYQF 294
C S IE+ R+V+ +
Sbjct: 239 VTVLSACAQSGSIELGRQVHSW 260
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 200/320 (62%), Gaps = 2/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
MP R+ +SWT MIT Y Q + L+ F EM+ G P +T+ VLS CA +GA DL
Sbjct: 446 MPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL 505
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H YV + D+DV + +AL+DMYAK G+L +L +F ++ ++++F W ++I GLA+
Sbjct: 506 GSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLAL 565
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG AL F M PN VT +SVLSAC+HAGLV EGR F M + I P+++
Sbjct: 566 HGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQ 625
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL +A ELI +P++VIW +LL C +H NL +A +A ++ L
Sbjct: 626 HYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIEL 685
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP++ G LL N+Y SRW + K R AM++ ++K+ PG SW+E+ V++F A D
Sbjct: 686 EPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKK-PGCSWVEVNGVVHEFLAEDA 744
Query: 300 SHPASDEIYSSLSKLDEQLK 319
H ++Y+ L + EQ+K
Sbjct: 745 VHCIRADVYTVLEAITEQMK 764
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 42/255 (16%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+SWT +I+ Y Q +A F+ + +SG+ PD + +SAC H L GR +H
Sbjct: 318 DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVH 377
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V + D +G+AL+DMY++ G+++ + VF + K++ W S++ G
Sbjct: 378 GMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIE 437
Query: 125 EALAMFDRMIYENVE--------------------------------PNGVTFISVLSAC 152
A +FD M N P +T ++VLS C
Sbjct: 438 AARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGC 497
Query: 153 THAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
G + G S GY ++ +V ++D+ +K+G L AL++ + +
Sbjct: 498 ADIGAFDLG-----SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP-KR 551
Query: 209 NAVIWGALLGGCKLH 223
+ W ++ G LH
Sbjct: 552 DVFSWTTMISGLALH 566
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 205/328 (62%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWT+MI Q + RE+LD F++M+ SG PD V + +VLSACA LG LD G
Sbjct: 268 MPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCG 327
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ DV+IG+ LVDMYAKCG +D + +F + KN+ WN+ I GLA++
Sbjct: 328 RWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAIN 387
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPEVE 179
G+ EAL F+ ++ PN VTF++V +AC H GLV+EGR+ F MT Y+++P +E
Sbjct: 388 GYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLE 447
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGL+ +A+ELI++ P+ I GALL + N+ + L +
Sbjct: 448 HYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNV 507
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
E +SG LL N+YA +WAEV +R MK+ GI K PGSS I ++ ++F D
Sbjct: 508 EFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISK-APGSSIIRVDGMSHEFLVGDN 566
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SHP S+EIY L+ L Q+ L ++ L
Sbjct: 567 SHPQSEEIYVLLNILANQIYLEGHINTL 594
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 5/219 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT +I+ Y + F EA+ F M + P+ T ++L AC LG L+LG
Sbjct: 170 MLVRDVVSWTGLISGYVKTGLFNEAISLFLRMN---VEPNVGTFVSILGACGKLGRLNLG 226
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH V + + ++ + +A++DMY KC S+ + +F ++ EK++ W S+I GL
Sbjct: 227 KGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQC 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E+L +F +M EP+GV SVLSAC GL++ GR + C + I +V
Sbjct: 287 QSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDC-HRIKWDVHI 345
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G + D + I + N W A +GG
Sbjct: 346 GTTLVDMYAKCGCI-DMAQRIFNGMPSKNIRTWNAYIGG 383
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 7/209 (3%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+I+ Y+ + A+ + +G PD T VL +CA + R+ H ++ G
Sbjct: 80 LISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTG 139
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
D+Y+ + LV +Y+ CG + VF + +++ W +I G G +EA+++F
Sbjct: 140 LWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFL 199
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSK 190
RM NVEPN TF+S+L AC G + G+ L C Y E+ ++D+ K
Sbjct: 200 RM---NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYG--EELVVCNAVLDMYMK 254
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ DA ++ + + + W +++GG
Sbjct: 255 CDSVTDARKMFDEMP-EKDIISWTSMIGG 282
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 210/326 (64%), Gaps = 1/326 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT +I+ SQN+++ +AL F++M+ + P+ T+ ++L ACA L G E+H
Sbjct: 153 NVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELH 212
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ M++GF D+Y+ +AL+DMY++ G L + VF K++EK L CWN ++ G A+H
Sbjct: 213 CFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGE 272
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E + ++D+M ++ P+ +TF ++LSAC ++GLV+EG + F SM Y+I P +EHY CM
Sbjct: 273 EVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCM 332
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL K+G L++A I + +P+A IWGALL CK+H+N+++A IA +L +EPNNS
Sbjct: 333 VDLLGKSGFLDEASHFIETMPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNS 392
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
L++N+Y+ ++RW V +++ +M L + K P SW ++ + ++ F+ + HP
Sbjct: 393 ANYVLMMNLYSSLNRWVAVERLKHSMTVLAM-KIPPVWSWTQVNQSIHVFSTEGRPHPEE 451
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAM 330
EIY L +L +++ Y P+L +
Sbjct: 452 GEIYFELYQLISEIRKLGYAPDLNCV 477
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 41/230 (17%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
L +F + + G PD ++ + L A LG LG+EIH Y+M+ + DVY+ ++LVDM
Sbjct: 3 LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
Y K L+++ V + + KN+ WNS+I G + G EA+ + ++M+ E + P+ VT+
Sbjct: 63 YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 122
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IR 202
++S GYS+ G +++AL + I+
Sbjct: 123 NGLVS--------------------GYSMQ----------------GRIDEALTIINRIK 146
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
SS PN V W AL+ GC + A +++ ++PN++ C+LL
Sbjct: 147 SSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLL 196
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 52/242 (21%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++ +W ++I+ YS QF EA+ N+M GI+PD VT
Sbjct: 82 KNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW------------------- 122
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK----NLFCWNSIIEGLAV 119
+ LV Y+ G +D +L + +++ N+ W ++I G +
Sbjct: 123 ----------------NGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQ 166
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+ +AL +F +M ENV+PN T S+L AC L+++G SM G+ ++
Sbjct: 167 NEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGF--VDDI 224
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV-IWGALLGGCKLHRNLEIAHIAVNELM 237
++D+ S+AG L+ A + +K Q + W ++ G +H + E E+M
Sbjct: 225 YVATALIDMYSEAGKLKVAYNVF--NKIQEKTLPCWNCMMMGYAIHSHGE-------EVM 275
Query: 238 IL 239
IL
Sbjct: 276 IL 277
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 202/311 (64%), Gaps = 1/311 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW+ MI+ Y+ + Q EAL FN+M+ GI PD+VTM +V+SACA+LG+LD
Sbjct: 263 MPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKA 322
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++ G + ++I +AL+DM+AKCG ++ +L +F ++ +KN+ W S+I A+H
Sbjct: 323 KWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMH 382
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F++M E VEPN VTF+++L AC HAGLV EGR F SM Y I P+ EH
Sbjct: 383 GDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEH 442
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +A L+++A+ LI S +PN +WG+LL C +H +L++ A +++ L+
Sbjct: 443 YGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLD 502
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN+ G LL +Y + + ++R MK G+ K G SW+++ ++F A +
Sbjct: 503 PNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKET-GLSWMDLNEPFHEFTAGGEK 561
Query: 301 HPASDEIYSSL 311
+P +D+I+ L
Sbjct: 562 YPENDKIFQKL 572
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 143/284 (50%), Gaps = 37/284 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW M+ Y Q + ++EAL F +MKNSG+ DQ+ +ATVLSAC H+ L G
Sbjct: 131 MAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTG 190
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD----------RSLLV------------ 98
+ IH Y++ I+ ++ SAL+++YA C S++ R LV
Sbjct: 191 KSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARN 250
Query: 99 ---------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
F + EK++ W+++I G A +EAL++F+ M + P+ VT +SV+
Sbjct: 251 RKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVI 310
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHY-GCMVDLLSKAGLLEDALELIRSSKFQP 208
SAC + G +++ +++ + ++ H ++D+ +K G + AL + Q
Sbjct: 311 SACANLGSLDKA--KWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMP-QK 367
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
N + W +++ +H + + A ++ +EPN + LL
Sbjct: 368 NVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLL 411
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 2/142 (1%)
Query: 23 REALDAFNEMKNSGISPD--QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80
R L A ++ +G+ P + A + SA +GA R H ++G D ++ +
Sbjct: 50 RLVLAACACLRRTGLPPPGPRALPALLRSAARCVGAGAYVRGAHALAFRVGSLDDGFVRT 109
Query: 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP 140
ALV YA CG + + VF + +++ W +++ EAL F +M V
Sbjct: 110 ALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS 169
Query: 141 NGVTFISVLSACTHAGLVEEGR 162
+ + +VLSAC H + G+
Sbjct: 170 DQLILATVLSACGHIRHLRTGK 191
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 198/315 (62%), Gaps = 1/315 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +ISW M++ Y+QN L+ + M +G+ PD VT+ VLS+CA+LGA +G
Sbjct: 204 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG 263
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ + GF + ++ +AL++MYA+CG+L ++ VF + E+ L W +II G +H
Sbjct: 264 HEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMH 323
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +F MI +EP+G F+ VLSAC+HAGL ++G F M Y + P EH
Sbjct: 324 GHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEH 383
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L++A LI S +P+ +WGALLG CK+H+N+E+A +A ++ LE
Sbjct: 384 YSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELE 443
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY LL N+Y+ + V +IR+ MKE ++K PG S++E++ +V+ F D++
Sbjct: 444 PENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKD-PGCSYVELKGRVHPFIVGDRN 502
Query: 301 HPASDEIYSSLSKLD 315
H SDEIY L +L+
Sbjct: 503 HLQSDEIYRVLEELE 517
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 126/247 (51%), Gaps = 6/247 (2%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + +++ Y N + +A+ F +M G+ + VT+ ++ AC L+LG +H
Sbjct: 109 VCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS 168
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ GFD DV + + + MY KCGS++ + +F ++ K L WN+++ G A +G A
Sbjct: 169 TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNV 228
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
L ++ M V P+ VT + VLS+C + G G F G++ P + + ++
Sbjct: 229 LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALI 286
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNN 243
++ ++ G L A + + + V W A++GG +H + EIA E++ +EP+
Sbjct: 287 NMYARCGNLTKA-QAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 345
Query: 244 SGYCTLL 250
+ + +L
Sbjct: 346 TAFVCVL 352
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 6/214 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W T + ++ QF +AL + +M G P+ T L +CA L LG + H +
Sbjct: 8 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVF---FKLREKNLFCWNSIIEGLAVHGFAHE 125
++G + ++ + L+ MY K +D + VF F R K C+N+++ G + +
Sbjct: 68 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSR-KLTVCYNALVSGYVSNSKCSD 126
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ +F +M E V N VT + ++ AC +E G S T Y +V C +
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFI 185
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ K G + A +L + + W A++ G
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSG 218
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 208/330 (63%), Gaps = 1/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D ++W+ MI + + A+D F EM+ G+ PD++TM +VLSACA LGAL+LG+
Sbjct: 189 PKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGK 248
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ YV + V + +AL+DM+AKCG++D+++ +F ++ + + W S+I GLA+HG
Sbjct: 249 WVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHG 308
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+A+++FD M+ + P+ V FI VLSAC+H+GLV++GR F SM +SI P+VEHY
Sbjct: 309 RGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHY 368
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL + G +++A E ++ F+PN +IW ++ C L++ EL+ EP
Sbjct: 369 GCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEP 428
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+ LL N+YA++ +W + TK+R M G+ K+ PGS+ IE+ ++Y+F A DKSH
Sbjct: 429 MHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGM-KKVPGSTMIEVNNEMYEFVAGDKSH 487
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
EIY + ++ ++K A YVP +L
Sbjct: 488 DQYKEIYEMVDEMGREIKKAGYVPTTSQVL 517
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 5/225 (2%)
Query: 2 PARDIISWTTMITCYSQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P+ D + T+I YSQ + + + + M G++P++ T VL CA +G+L LG
Sbjct: 85 PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG--SLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ +H V++ GF+ DV++ + L+ MY G + + VF + + W+++I G
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFV 204
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G + A+ +F M V P+ +T +SVLSAC G +E G + S +I V
Sbjct: 205 RLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKSV 263
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
E ++D+ +K G ++ A++L R + V W +++ G +H
Sbjct: 264 ELCNALIDMFAKCGNVDKAIKLFRQMDSR-TIVSWTSVIAGLAMH 307
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 33/161 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +R I+SWT++I + + + +A+ F+EM +GI+PD V VLSAC+H G +D G
Sbjct: 289 MDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R GS++R+ + K+ + +++ L
Sbjct: 349 RYYF-------------------------GSMERNFSIVPKVEH-----YGCMVDLLCRG 378
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
GF EA +M + EPN + + ++++AC G ++ G
Sbjct: 379 GFVKEAFEFVQKMPF---EPNQIIWRTIITACHATGELKLG 416
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 203/316 (64%), Gaps = 1/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+PA+++++WT +I Y++ +EA ++M SG+ D + ++L+AC G L LG
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLG 334
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH + + + Y+ +AL+DMYAKCG+L ++ VF + +K+L WN+++ GL VH
Sbjct: 335 MRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVH 394
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F RM E + P+ VTFI+VL +C HAGL++EG F SM Y + P+VEH
Sbjct: 395 GHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH 454
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL + G L++A++++++ +PN VIWGALLG C++H ++IA ++ L+ L+
Sbjct: 455 YGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 514
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G +LL N+YA W V IR MK +G+EK G+S +E+E +++F DKS
Sbjct: 515 PCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPS-GASSVELEDGIHEFTVFDKS 573
Query: 301 HPASDEIYSSLSKLDE 316
HP SD+IY L L E
Sbjct: 574 HPKSDQIYQMLGSLIE 589
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 54/289 (18%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
++I ++QN Q +A F+EM+ G+ D T +L AC+ L + + +H ++ +
Sbjct: 86 NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145
Query: 70 IGFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+G D+Y+ +AL+D Y++CG L ++ +F K+ E++ WNS++ GL G +A
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 128 AMFDRM--------------------------IYENV-EPNGVTFISVLSACTHAGLVEE 160
+FD M ++E + E N V++ +++ + AG +E
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEM 265
Query: 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-----KFQPNAVI--- 212
R F M V + ++ ++ GLL++A L+ KF AVI
Sbjct: 266 ARVMFDKMPLP---AKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 213 -----WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
G L G ++H L+ +++ N ++ LL+MYA+
Sbjct: 323 AACTESGLLSLGMRIHSILKRSNLGSNAYVL---------NALLDMYAK 362
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +M+ + + R+A F+EM D ++ T+L A +
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQR----DLISWNTMLDGYARCREMSKA 235
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LREKNLFCWNSIIEGLA 118
E+ + + + S +V Y+K G ++ + ++F K L KN+ W II G A
Sbjct: 236 FEL----FEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G EA + D+M+ ++ + IS+L+ACT +GL+ G R S+ ++
Sbjct: 292 EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLG-MRIHSILKRSNLGSNA 350
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L+ A ++ + + V W +L G +H
Sbjct: 351 YVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVH 394
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL 107
L CA+L + +++H +++ D++I L+ + C + ++ VF +++E N+
Sbjct: 26 LPKCANLNQV---KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
NS+I A + ++A +F M + + T+ +L AC+ + +
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLL--EDALELIRSSKFQPNAVIWGALLGG 219
+ ++ ++ ++D S+ G L DA++L + + V W ++LGG
Sbjct: 143 IE-KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGG 194
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 214/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW T+I Y+ ++EAL F EM SG +P+ VTM ++L ACAHLGA+D+G
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + G + ++L+DMYAKCG ++ + VF + K+L WN++I G A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A + +F RM ++P+ +TF+ +LSAC+H+G+++ GR F +MT Y +TP++
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +GL ++A E+I + +P+ VIW +LL CK+H N+E+ L+
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 566
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA RW EV K R + + G+ K+ PG S IE++ V++F D
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGD 625
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP + EIY L +++ L+ A +VP+ +L
Sbjct: 626 KFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVL 658
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 133/230 (57%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ ++EAL+ F +M + + PD+ TM TV+SACA G+++LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++HL++ GF ++ I +AL+D+Y+KCG L+ + +F +L K++ WN++I G
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR +R +T S
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ +S + W A++ G +H
Sbjct: 406 LRTS------LIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMH 448
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T VL +CA A G++IH
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIH 157
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
+V+++G D+D+Y+ ++L+ MY + G L+ + VF K
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIE 217
Query: 102 --------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ K++ WN++I G A G EAL +F M+ NV P+ T ++V+SAC
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E GR+ L + + ++ ++DL SK G LE A L ++ + + W
Sbjct: 278 QSGSIELGRQVHLWID-DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISW 335
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ T+L + A ++ RW V
Sbjct: 336 NTLIGGYT-HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 128/302 (42%), Gaps = 33/302 (10%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD---MYAKCGSLDRSLLVFFKL 102
++L C L +L R IH +++IG Y S L++ + L ++ VF +
Sbjct: 38 SLLHNCKTLQSL---RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI 94
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+E NL WN++ G A+ AL ++ MI + PN TF VL +C + +EG+
Sbjct: 95 QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 154
Query: 163 R---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ L + C + ++ + + G LEDA ++ S + + V + AL+ G
Sbjct: 155 QIHGHVLKLGCDLDLYVHTS----LISMYVQNGRLEDAHKVFDKSPHR-DVVSYTALIKG 209
Query: 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE--- 276
+E A +E+ + + +++ YAE + E ++ M + +
Sbjct: 210 YASRGYIENAQKLFDEIPV---KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 277 -------KRCPGSSWIEMERKV------YQFAASDKSHPASDEIYSSLSKLDEQLKLASY 323
C S IE+ R+V + F ++ K A ++YS +L+ L
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 324 VP 325
+P
Sbjct: 327 LP 328
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW MI Y N EA+D F +M++ + PD +++A+VL AC L AL LGR I
Sbjct: 1258 KSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRI 1317
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ ++ + +AL+DMYAKCG L+ + VF +++ +++ W S+I ++G
Sbjct: 1318 HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKG 1377
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+++F RM + P+ + F+SVLSAC+HAGL++EGR F MT I P +EH+ C
Sbjct: 1378 RDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVC 1437
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG +++A I+ +PN +WGALL C+++ N+ I +A ++L L P
Sbjct: 1438 MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQ 1497
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N+YA+ RW +VT +R MK GI K+ PG S E++ +V+ F A D+SHP
Sbjct: 1498 SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI-KKMPGVSNFELDNRVHTFLAGDQSHPQ 1556
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S +IY L L ++K A YVPE ++ L
Sbjct: 1557 SKQIYEELDVLVGKMKEAGYVPETDSAL 1584
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++ + MI Y N + +AL F M GI PD T VL A + L +G
Sbjct: 1086 IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVG 1145
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G D++V++G+ L+ MY KCG L + V ++ +++ WNS++ G A +
Sbjct: 1146 MQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARN 1205
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
G +AL + M ++P+ T S+L A T+ L
Sbjct: 1206 GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 1242
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 35/217 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +++ ++N QF +AL+ EM+ G+ PD TMA++L A
Sbjct: 1187 MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA---------- 1236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
V D ++ +F KL K+L WN +I +
Sbjct: 1237 ------VTNTCLDNVSFVKE-----------------MFMKLANKSLVSWNVMIAVYMNN 1273
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA+ +F +M V+P+ ++ SVL AC + G RR + P +
Sbjct: 1274 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG-RRIHEYVVRKRLQPNLLL 1332
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ +K G LE A E+ KF+ + V W +++
Sbjct: 1333 ENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMI 1368
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT+MI+ Y N + R+A+ F+ M++ G++PD + +VLSAC+H G LD G
Sbjct: 1356 MKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG 1415
Query: 61 R---EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
R ++ +I I+ ++ +VD+ + G +D + ++ E N W +++
Sbjct: 1416 RYYFKLMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 1473
Query: 117 LAVH 120
V+
Sbjct: 1474 CRVY 1477
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 30/199 (15%)
Query: 69 QIGFDIDVY----IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+I D D++ +G L+ YA CG + +F ++ +KN+ +N +I +
Sbjct: 1049 KICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYS 1108
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFLSMTCGYS 173
+AL +F M ++P+ T+ VL A + HA +V G + + G
Sbjct: 1109 DALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNG-- 1166
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
++ + K G L +A ++ + + V W +L+ GC + + A
Sbjct: 1167 ----------LISMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGCARNGQFDDALEVC 1215
Query: 234 N--ELMILEPNNSGYCTLL 250
EL+ L+P+ +LL
Sbjct: 1216 KEMELLGLKPDAGTMASLL 1234
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 215/334 (64%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA---L 57
+P +D+++WT+M+T YSQN ++AL F +M+ +G+ D++T+ +SACA LG
Sbjct: 201 LPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYA 260
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
D REI + G +V++GSAL+DMY+KCG+++ + VF ++E N+F ++S+I G
Sbjct: 261 DWIREI-AESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGF 319
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
AVHG A A+ +F M+ ++PN VTF+ + +AC+HAG+VE+G++ F +M Y ++P
Sbjct: 320 AVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPT 379
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+HY CM DLL +AG LE AL+L+++ +PN +WGALLG +H N ++A IA L
Sbjct: 380 ADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLF 439
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK-VYQFAA 296
LEP+N G LL YA ++W +V+++R M+E + K PG SW+E + +++F A
Sbjct: 440 ELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKN-PGCSWVEAKNGIIHEFFA 498
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
D HP +EI +L L ++LK Y P+L ++
Sbjct: 499 GDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSV 532
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 107/247 (43%), Gaps = 36/247 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
++ +I Y++N F ++ + M N+ +SP T + + S L LG ++HL+
Sbjct: 80 YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNPSLGSQLHLHAF 136
Query: 69 QIGFDIDVYIGSALVDM-------------------------------YAKCGSLDRSLL 97
GF D+Y+G+ ++ M YA+ G +D +
Sbjct: 137 LFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACE 196
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F L K++ W S++ G + + +AL F +M V + +T + +SAC G+
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV 256
Query: 158 VEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
R ++ + + V ++D+ SK G +E+A + + K + N + ++
Sbjct: 257 SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMK-EMNVFSYSSM 315
Query: 217 LGGCKLH 223
+ G +H
Sbjct: 316 IVGFAVH 322
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 214/331 (64%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D I W ++I ++QN + AL+ F MK +G +Q T+ +VL AC L L+LG
Sbjct: 172 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H+++++ +D D+ + +ALVDMY KCGSL+ + VF +++E+++ W+++I GLA +
Sbjct: 232 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQN 289
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EAL +F+ M +PN +T + VL AC+HAGL+E+G F SM Y I P EH
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREH 349
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL KAG L+DA++L+ + +P+AV W LLG C++ RN+ +A A +++ L+
Sbjct: 350 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 409
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G T+L N+YA +W V +IR M+++GI+K PG SWIE+ ++++ F D+S
Sbjct: 410 PEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKE-PGCSWIEVNKQIHAFIIGDES 468
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP E+ L++L +L YVPE +L
Sbjct: 469 HPQIVEVNKKLNQLIHRLIGIGYVPETNFVL 499
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWTTMI+ YS+ K ++AL+ M G+ P+ T ++VL AC + +
Sbjct: 74 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV--- 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +++ G + DVY+ SAL+D++AK G + +L VF ++ + WNSII G A +
Sbjct: 131 RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 190
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F RM T SVL ACT L+E G + + + ++
Sbjct: 191 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV---KYDQDLIL 247
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G LEDA + K + + + W ++ G
Sbjct: 248 NNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISG 285
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREI--HLYVMQIGFDIDVYIGSALVDMY 86
+ +++ G+ D T + ++ C A+ G I HLY G +++ + L++MY
Sbjct: 1 MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFN--GHQPMMFLVNVLINMY 58
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
K L+ + +F ++ ++N+ W ++I + +AL + M+ + V PN T+
Sbjct: 59 VKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYS 118
Query: 147 SVLSACT--------HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
SVL AC H G+++EG + +V ++D+ +K G EDAL
Sbjct: 119 SVLRACNGMSDVRMLHCGIIKEG------------LESDVYVRSALIDVFAKLGEPEDAL 166
Query: 199 ELIRSSKFQPNAVIWGALLGG 219
+ +A++W +++GG
Sbjct: 167 SVF-DEMVTGDAIVWNSIIGG 186
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 205/318 (64%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+I+SW MI+CY Q Q EALD +N+M++ G++PD++T+ VLSA +G L +G
Sbjct: 305 MPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVG 364
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +HLY+ ++ DV + ++L+DMYAKCG +D ++ +F ++ +N+ WN II GLA+H
Sbjct: 365 KMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMH 424
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A + + F M+ ++ P+G+TF+++LSAC+H GL+E G+ F SM Y++ EVEH
Sbjct: 425 GRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEH 484
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G LE A+ LI+ +P+ V+WGALLG C++H N++I + +L+ LE
Sbjct: 485 YACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELE 544
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ G L+ N+ E +W ++ ++R MKE G K G S IE+ +++F D
Sbjct: 545 GISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDM-GVSSIEINNSIHEFGVEDIR 603
Query: 301 HPASDEIYSSLSKLDEQL 318
H S EIY+ + +L L
Sbjct: 604 HERSSEIYAVVDQLSYHL 621
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 33/254 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +MI Y+Q RE F EM+ G D+ T+ ++L AC+ G L++G
Sbjct: 173 MVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIG 232
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
R +H ++ G +D+ + SALVDMY KC
Sbjct: 233 RLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKH 292
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
GS++ + F + E+N+ WN++I G HEAL ++++M + + P+ +T ++VL
Sbjct: 293 GSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVL 352
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SA G + G+ L + P+V ++D+ +K G ++ A+ L S N
Sbjct: 353 SASGRIGDLTVGKMVHLYIRDNI-YNPDVSLVNSLLDMYAKCGQVDTAISLF-SEMCNRN 410
Query: 210 AVIWGALLGGCKLH 223
V W ++GG +H
Sbjct: 411 VVSWNVIIGGLAMH 424
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + + T+I Y + REAL M GI P++ T+ V+ AC A +
Sbjct: 72 IPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHA 131
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++G V++G+AL+ YA GSL S F ++ ++N+ WNS+I G A
Sbjct: 132 LAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQA 191
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G E ++F M + + T +S+L AC+ G +E GR
Sbjct: 192 GDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGR 233
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 199/310 (64%), Gaps = 2/310 (0%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
REAL F M+ G+ PD + VL ACA LG L+ G+ +H Y+ I V++G+AL
Sbjct: 118 REALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 177
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
VDMYAKCG + ++ VF ++EKN+ W ++I+GLA+HG EAL +F +M V+P+
Sbjct: 178 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 237
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
+ FI L ACTH GLV++GR F SM Y I P++EHYGCMVDLL++ GLL +A E++
Sbjct: 238 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 297
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262
+P+A+IWGAL+ GC+ H+N+E+A V + LEP+ SG LL N+YA R A
Sbjct: 298 KMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 357
Query: 263 VTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL-A 321
+IR M+E G++K PG S +E++ ++QF D SHP +EI S ++D +++L
Sbjct: 358 AREIRHLMREKGVDK-TPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEE 416
Query: 322 SYVPELEAML 331
YVP+ + +L
Sbjct: 417 GYVPDKKEVL 426
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++WTTMI + + + EAL+ F++M+ G+ PD + L AC H G +D G
Sbjct: 197 MKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKG 256
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
RE+ V + G + +VD+ A+ G L+ + + K+ K + W +++ G
Sbjct: 257 RELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCR 316
Query: 119 VH 120
H
Sbjct: 317 FH 318
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY- 172
+ G + G EAL +F RM + V P+ + VL AC G++E+G+ GY
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGK-----WVHGYL 162
Query: 173 ---SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+I V +VD+ +K G ++ A+E+ + K + N + W ++ G +H
Sbjct: 163 KANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMIKGLAMH 215
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 203/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M RD+ SW+ +I ++ + E L F EM G P++ + +VLSAC HLGALDL
Sbjct: 146 MDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDL 205
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR H+ +++ +++V + ++L+DMY KCG +++ L +F ++ +KN ++ +I GLA+
Sbjct: 206 GRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAM 265
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +F M+ E ++P+ V ++ VLSAC HAGLV+EG + F M + I P ++
Sbjct: 266 HGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQ 325
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC+V L+ +AG+L ALE IRS +PN V+W LL CK H NLEI IA L L
Sbjct: 326 HYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGEL 385
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+N G +L NMYA RW +V KIR M G + PG S +++ERK+Y+F + D
Sbjct: 386 NSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQ-TPGFSLVQVERKIYKFVSQDM 444
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +Y + +++ QLK Y P+ +L
Sbjct: 445 SHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVL 476
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 5/245 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI Y AL + EM G+ D T + ACA L +++ G +IH Y+
Sbjct: 53 FNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIF 112
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G + D+++ ++L++MY KCG ++ S VF + +++ W++II A G E L+
Sbjct: 113 KRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLS 172
Query: 129 MFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+F M E + P +SVLSACTH G ++ GR +++ + ++D+
Sbjct: 173 VFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTS-LIDM 231
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVNELMI-LEPNNSG 245
K G +E L L + + N + + ++ G +H R +E + + L L+P++
Sbjct: 232 YVKCGCIEKGLSLFQ-RMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVV 290
Query: 246 YCTLL 250
Y +L
Sbjct: 291 YLGVL 295
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 205/323 (63%), Gaps = 2/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD + W +M+ Y+QN E+L EM G+ P + T+ TV+S+ A + L GREI
Sbjct: 223 RDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREI 282
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + GF + + +AL+DMYAKCGS+ + ++F +LREK + WN+II G A+HG A
Sbjct: 283 HGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLA 342
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F+RM+ E +P+ +TF+ L+AC+ L++EGR + M I P VEHY C
Sbjct: 343 VEALDLFERMMKE-AQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTC 401
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL G L++A +LIR P++ +WGALL CK H N+E+A +A+ +L+ LEP++
Sbjct: 402 MVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDD 461
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG +L NMYA+ +W V ++R M + GI+K SWIE++ KVY F + D SHP
Sbjct: 462 SGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNI-ACSWIEVKNKVYAFLSGDVSHPN 520
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
S IY+ L +L+ ++ A YVP+
Sbjct: 521 SGAIYAELKRLEGLMREAGYVPD 543
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ W +I Y+ N A+ +++M G+ PD T+ VL AC+ L + G
Sbjct: 119 IPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEG 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V++ G++ DV++G+ALVDMYAKCG + + VF K+ +++ WNS++ A +
Sbjct: 179 RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G E+L++ M + V P T ++V+S+ + GR G+ +V+
Sbjct: 239 GHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVK 298
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G ++ A L + + V W A++ G +H
Sbjct: 299 --TALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAIITGYAMH 339
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 9/208 (4%)
Query: 16 YSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI 74
Y ++ F L +++ + SP + A++L +C AL+ G+++H + Q+G
Sbjct: 32 YFLHQSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAY 91
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
++ + + LV+ Y+ C SL + +F K+ + NLF WN +I A +G A++++ +M+
Sbjct: 92 NLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQML 151
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
++P+ T VL AC+ + EGR R + G+ +V +VD+ +K
Sbjct: 152 EYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIR--SGWE--RDVFVGAALVDMYAKC 207
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGG 219
G + DA + +AV+W ++L
Sbjct: 208 GCVVDARHVF-DKIVDRDAVLWNSMLAA 234
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 205/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW +M+ Y+QN EA + + +G P +++VL+ CA L LDLG
Sbjct: 283 MGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLG 342
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ D ++++ SALVDMY KCG ++ + VFF++ ++NL WN++I G A
Sbjct: 343 RALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHI 402
Query: 121 GFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G AH AL++FD+MI + PN +T ++VL+AC+ GL +EG F +M + I P +E
Sbjct: 403 GDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIE 462
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL +AG+ E A ++I+ +P+ +WGALLGGCK+H E+ IA +L L
Sbjct: 463 HYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFEL 522
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P +SG LL NM A RWAE T +R MK +GI+K PG SWI + V+ F A D
Sbjct: 523 DPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKD-PGRSWITWKNVVHVFQAKDT 581
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+H + EI + L+KL Q++ A Y+P+ + L
Sbjct: 582 THDMNREIQALLAKLKGQMQAAGYMPDTQYAL 613
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 13/285 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++W ++T + + E ++A+ ++ +G P+ V++ +ACA + L LG
Sbjct: 182 MPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + +V + GF DV + +++VD Y KC + ++ VF + +N W S++ A +
Sbjct: 242 EQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQN 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
G EA ++ EP SVL+ C AGL+ R L S I +
Sbjct: 302 GAEEEAFFVYLGARRAGEEPTDFMVSSVLTTC--AGLLGLDLGRALHAVAVRSCIDSNIF 359
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH--IAVNELM 237
+VD+ K G +EDA E + Q N V W A++GG + ++ AH ++V + M
Sbjct: 360 VASALVDMYGKCGGIEDA-EQVFFEMPQRNLVTWNAMIGG---YAHIGDAHNALSVFDKM 415
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWA---EVTKIRVAMK-ELGIEKR 278
I+ + L+N+ SR E ++ MK GIE R
Sbjct: 416 IMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPR 460
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL-G 60
P+ ++S+T I+ +Q+ + +AL AF M G+ P+ T + A A G
Sbjct: 80 PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++H ++ G+ D ++ A +DMY K G L + +F ++ +N+ WN+++ +
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVL 199
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEV 178
G E + + + PN V+ + +AC + G + + CG+ +V
Sbjct: 200 DGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFG--KDV 257
Query: 179 EHYGCMVDLLSK 190
+VD K
Sbjct: 258 SVSNSVVDFYGK 269
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/330 (42%), Positives = 212/330 (64%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I Y+ ++EAL F EM SG +P+ VTM +VL ACAHLGA+D+GR I
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWI 319
Query: 64 HLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H+Y+ + G + ++L+DMYAKCG ++ + VF + K+L WN++I G A+HG
Sbjct: 320 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 379
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A + +F RM +EP+ +TF+ +LSAC+H+G+++ GR F SMT Y +TP++EHY
Sbjct: 380 RADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHY 439
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL +GL ++A E+I + + +P+ VIW +LL CK+H N+E+A L+ +EP
Sbjct: 440 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEP 499
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N LL N+YA RW +V +IR A+ K+ PG S IE++ V++F DK H
Sbjct: 500 ENPSSYILLSNIYASAGRWEDVARIR-ALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFH 558
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + EIY L +++ L+ A +VP+ +L
Sbjct: 559 PQNREIYGMLEEMEVLLEEAGFVPDTSEVL 588
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 144/259 (55%), Gaps = 16/259 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ ++EAL+ F EM + PD+ T TVLSACAH G+++LG
Sbjct: 156 IPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELG 215
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +V GFD ++ I +AL+D+Y+KCG ++ + +F L K++ WN++I G
Sbjct: 216 RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHM 275
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +SVL AC H G ++ GR +R +T S
Sbjct: 276 NLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 335
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ ++D+ +K G +E A ++ +S + W A++ G +H + +
Sbjct: 336 LRTS------LIDMYAKCGDIEAAHQVF-NSMLHKSLSSWNAMIFGFAMHGRADASFDLF 388
Query: 234 NEL--MILEPNNSGYCTLL 250
+ + + +EP++ + LL
Sbjct: 389 SRMRKIGIEPDDITFVGLL 407
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 41/293 (13%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TMI ++ + +L + M + G+ P+ T +L +CA G++IH V+
Sbjct: 32 WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91
Query: 69 QIGFDIDVYIGSALVDMY-------------------------------AKCGSLDRSLL 97
++GFD+D+Y+ ++L+ MY A G + +
Sbjct: 92 KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQK 151
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F ++ K++ WN++I G A G EAL +F+ M+ NV P+ T+++VLSAC H+G
Sbjct: 152 LFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGS 211
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+E G R+ S + ++ ++DL SK G +E A L + ++ + + W L+
Sbjct: 212 IELG-RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYK-DVISWNTLI 269
Query: 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
GG H NL + + + M+ T+L + A ++ RW V
Sbjct: 270 GG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHV 321
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 17/208 (8%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++E N WN++I G A+ +L ++ M+ + PN TF +L +C +
Sbjct: 20 VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79
Query: 158 VEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
EG++ + G+ + V + ++ + + LEDA ++ S + + V + AL
Sbjct: 80 FTEGQQIHGQVLKLGFDLDLYV--HTSLISMYVQNWRLEDAYKVFDRSSHR-DVVSYTAL 136
Query: 217 LGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ G ++ A +E+ + + + +++ YAE + E ++ M ++ +
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVS---WNAMISGYAETGCYKEALELFEEMMKMNVR 193
Query: 277 ----------KRCPGSSWIEMERKVYQF 294
C S IE+ R+V+ +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSW 221
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 208/327 (63%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW MI Y+QN + EA+D F +M+ I PD TM +V+ A A L L + I
Sbjct: 441 KTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWI 500
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ D +V++ +ALVDMYAKCG++ + +F + E+++ WN++I+G HG
Sbjct: 501 HGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLG 560
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL +F++M E ++PN VTF+ VLSAC+H+GLVEEG + F SM Y + P ++HYG
Sbjct: 561 KAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGA 620
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +A L +A + I+ +P ++GA+LG C++H+N+E+ A N + L+P++
Sbjct: 621 MVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDD 680
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY LL N+YA S W +V ++R M++ GI+K PG S +E++ +V+ F + SHP
Sbjct: 681 GGYHVLLANIYATASMWDKVARVRTTMEKKGIQK-TPGWSVVELQNEVHTFYSGTTSHPQ 739
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
+ +IY+ L L ++K A Y+P+ ++
Sbjct: 740 AKKIYAFLETLGNRIKAAGYMPDTNSV 766
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 6/221 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++ W T+I+ Y+QN + AL+ M+ G PD +T+ ++L A A +G+L +G
Sbjct: 236 MPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIG 295
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y M+ GF+ V + +ALVDMY+KCGS+ + L+F ++ K + WNS+I+G +
Sbjct: 296 RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQN 355
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G A+ +F +M+ E VE VT + L AC G VE+GR + L + +V
Sbjct: 356 GDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ---LELGSDV 412
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + SK ++ A E+ + + + V W A++ G
Sbjct: 413 SVMNSLISMYSKCKRVDIAAEIFENLQHK-TLVSWNAMILG 452
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW +MI Y QN A++ F +M + + VT+ L ACA LG ++ G
Sbjct: 337 MTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG 396
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + Q+ DV + ++L+ MY+KC +D + +F L+ K L WN++I G A +
Sbjct: 397 RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQN 456
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G +EA+ F +M +N++P+ T +SV+ A ++ + + + TC + V
Sbjct: 457 GRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTC---LDKNV 513
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM- 237
+VD+ +K G + A +L + + W A++ G H L A + + E M
Sbjct: 514 FVATALVDMYAKCGAVHTARKLFDMMD-ERHVTTWNAMIDGYGTH-GLGKAALELFEKMK 571
Query: 238 --ILEPNNSGYCTLL 250
+++PN + +L
Sbjct: 572 KEVIKPNEVTFLCVL 586
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 12/224 (5%)
Query: 2 PARDIIS--WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
P D I + TM+ Y++N +A+ F M+ G+ P +L C L
Sbjct: 134 PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRK 193
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+EIH ++ GF +V+ + +V+MYAKC ++ + +F ++ E++L CWN+II G A
Sbjct: 194 GKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQ 253
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+GF AL + RM E P+ +T +S+L A G + GR GYS+ E
Sbjct: 254 NGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRS-----IHGYSMRAGFE 308
Query: 180 HY----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +VD+ SK G + A LI V W +++ G
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTA-RLIFDRMTGKTVVSWNSMIDG 351
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R + +W MI Y + + AL+ F +MK I P++VT VLSAC+H G ++ G
Sbjct: 539 MDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEG 598
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 209/327 (63%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW +I+ +S K+ ++ F+ M G+ PD T ATVL CA+L + LG++I
Sbjct: 524 QTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQI 583
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ DVYI S LVDMY+KCG++ SLL+F K +++ WN++I G A HG
Sbjct: 584 HAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLG 643
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F+ M++EN++PN TF+SVL AC+H G ++G F M Y++ P++EHY C
Sbjct: 644 EEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSC 703
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L ++G +E+AL LI+ F+ +A+IW LL CK+ N+E+A A + L+ L+P +
Sbjct: 704 MVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPED 763
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S TLL N+YA+ W +V+KIR M+ ++K PG SWIE++ +V+ F DK+HP
Sbjct: 764 SSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKE-PGCSWIEVKDEVHTFLVCDKAHPK 822
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
+ IYS L L ++ + PE++ +
Sbjct: 823 CEMIYSLLDLLICDMRRSGCAPEIDTI 849
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +IT QN+ + L F M S + PD+ T +VL ACA A G
Sbjct: 420 MEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG 479
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H +++ G + +++GSALVDMY+KCG ++ + + ++L E+ + WN+II G ++
Sbjct: 480 MEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQ 539
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ ++ F M+ VEP+ T+ +VL C + V G++ M + +V
Sbjct: 540 KKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMI-KLELLSDVYI 598
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+VD+ SK G + D+L + R + + ++V W A++ G H E A + + E M+
Sbjct: 599 TSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLGEEA-LELFEHMLHE 656
Query: 239 -LEPNNSGYCTLL 250
++PN++ + ++L
Sbjct: 657 NIKPNHATFVSVL 669
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 1 MPAR-DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP D++SW ++I+ Y QN ++++ F +M++ G+ D T+A L C+ L L
Sbjct: 116 MPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVL 175
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH +Q+GFD DV GSALVDMYAKC SL+ SL VF +L +KN W++ I G
Sbjct: 176 GIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQ 235
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+ L +F M + + + T+ SV +C AGL
Sbjct: 236 NDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSC--AGL 271
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 146/310 (47%), Gaps = 18/310 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ ISW+ I QN Q L F EM+ GI Q T A+V +CA L A LG
Sbjct: 218 LPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLG 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F DV +G+A +DMYAKC ++ + +F L + NL +N++I G A +
Sbjct: 278 TQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARN 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISV-LSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+A +F ++ + N +F V LS A V +G L + G +I +
Sbjct: 338 EQGFQAFKLFLQL-----QKNSFSFDEVSLSGALSAAAVIKGHSEGLQLH-GLAIKSNLS 391
Query: 180 HYGC----MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRN--LEIAHIAV 233
C ++D+ K G L +A L + + + V W A++ C+ + + ++H
Sbjct: 392 SNICVANAILDMYGKCGALVEASGLFDEMEIR-DPVSWNAIITACEQNESEGKTLSHFGA 450
Query: 234 NELMILEPNNSGYCTLLLNMYAE--VSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKV 291
+EP+ Y ++L + S EV R+ +G+ K GS+ ++M K
Sbjct: 451 MLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHG-RIIKSGMGL-KMFVGSALVDMYSKC 508
Query: 292 YQFAASDKSH 301
++K H
Sbjct: 509 GMMEEAEKIH 518
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 38/212 (17%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T + + C++ AL G+E H +++ GF V++ + L+ MY KC +L+ + VF ++
Sbjct: 26 TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
++++ WN+++ G A G A A+F+ M + + V++ S++S G +++
Sbjct: 86 PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHG---DVVSWNSLISGYLQNGDIQKSI 142
Query: 163 RRFLSM-------------------------TCGYSITPEVEHYG---------CMVDLL 188
FL M G I G +VD+
Sbjct: 143 AVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMY 202
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+K LED+L++ S N + W A + GC
Sbjct: 203 AKCNSLEDSLDVF-SELPDKNWISWSAAIAGC 233
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG- 60
P RD ++W MI ++ + EAL+ F M + I P+ T +VL AC+H+G G
Sbjct: 623 PKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGL 682
Query: 61 ----REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIE 115
+ +Y ++ ++ Y S +VD+ + G ++ +L + + E + W +++
Sbjct: 683 FYFQKMASIYALEP--QLEHY--SCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLS 738
Query: 116 GLAVHG 121
+ G
Sbjct: 739 ICKIQG 744
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 211/323 (65%), Gaps = 1/323 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++++SW ++I+ +S KQ EA F+EM + G+ PD T ATVL CA+L ++LG++
Sbjct: 517 GQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQ 576
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +++ D YI S LVDMYAKCG++ SLL+F K R+ + WN++I G A+HG
Sbjct: 577 IHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQ 636
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL MF+RM NV PN TF++VL AC+H GL+++G + F MT Y + P++EH+
Sbjct: 637 GLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFA 696
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVD+L ++ ++ALE IRS + +AV+W LL CK+ +++E+A A + ++ L+P+
Sbjct: 697 CMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPD 756
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
++ LL N+YA +W +V++ R M++ G ++ PG SWIE++ +++ F DK HP
Sbjct: 757 DASVYILLSNVYAGSGKWVDVSRTRRLMRQ-GRLRKEPGCSWIEVQSEMHGFLVGDKVHP 815
Query: 303 ASDEIYSSLSKLDEQLKLASYVP 325
S E+Y L+ L ++KL+ Y P
Sbjct: 816 RSKEVYEMLNSLIGEMKLSGYEP 838
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +I QN+ + + + NEM SG+ PD T +VL ACA L +L+ G
Sbjct: 414 MEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYG 473
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ G +D ++ S +VDMY KCG++ + + ++ + L WNSII G ++
Sbjct: 474 LVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLT 533
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-- 178
+ EA F M+ V+P+ T+ +VL C + +E G++ G I E+
Sbjct: 534 KQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIH-----GQIIKQEMLG 588
Query: 179 EHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ Y +VD+ +K G + D+L + ++ + + V W A++ G LH
Sbjct: 589 DEYISSTLVDMYAKCGNMPDSLLMFEKAR-KLDFVSWNAMICGYALH 634
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 1/197 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SW T+I+ Y Q+ FR ++ EM G++ D+ T+A +L +C L L LG
Sbjct: 111 MPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALG 170
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH ++ G + DV GSALVDMY KC SLD +L F + E+N W + I G +
Sbjct: 171 VQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQN 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ +F +M + + + S +C + R+ + V
Sbjct: 231 EQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVG 290
Query: 181 YGCMVDLLSKAGLLEDA 197
+VD+ +KAG L DA
Sbjct: 291 TA-IVDVYAKAGNLVDA 306
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 129/257 (50%), Gaps = 14/257 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ + M+ + EA+ F M SG+ D ++++ V SACA + G
Sbjct: 313 LPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQG 372
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ GFD+DV + +A++D+Y KC +L + LVF ++ +++ WN+II L +
Sbjct: 373 LQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQN 432
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----HAGLVEEGRRRFLSMTCGYSIT 175
+ +A + M+ +EP+ T+ SVL AC GLV G+ ++ G +
Sbjct: 433 ECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGK----AIKSGLGLD 488
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
V +VD+ K G + +A +L Q V W +++ G L + E A +E
Sbjct: 489 AFVS--STVVDMYCKCGAITEAQKLHDRIGGQ-ELVSWNSIISGFSLTKQSEEAQRFFSE 545
Query: 236 L--MILEPNNSGYCTLL 250
+ M ++P++ Y T+L
Sbjct: 546 MLDMGVKPDHFTYATVL 562
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW I QN+Q+ ++ F +M+ G+ Q A+ +CA + L
Sbjct: 212 MGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTA 271
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ F D +G+A+VD+YAK G+L + F L N+ N+++ GL
Sbjct: 272 RQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRT 331
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-GLVEEGRRRFLSMTCGYSITPEVE 179
G EA+ +F M V + ++ V SAC G + + L++ G+ + V
Sbjct: 332 GLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVR 391
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE--IAHIAVNELM 237
+ ++DL K L +A L+ Q ++V W A++ + + E IAH+ NE++
Sbjct: 392 N--AILDLYGKCKALVEAY-LVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHL--NEML 446
Query: 238 I--LEPNNSGYCTLL 250
+EP++ Y ++L
Sbjct: 447 RSGMEPDDFTYGSVL 461
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 39/207 (18%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL 107
L A A AL G+ H ++ GF ++ + L+ MYA+CG + VF + ++
Sbjct: 26 LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA-CTHA------GLVEE 160
WN+++ G A ++F M +P+ V++ +++S C H GL E
Sbjct: 86 VSWNTMLTAYVHAGDTDTAASLFGTM----PDPDVVSWNTLISGYCQHGMFRNSVGLSME 141
Query: 161 GRRRFLSM----------TCG-----------------YSITPEVEHYGCMVDLLSKAGL 193
RR +++ +CG + +V +VD+ K
Sbjct: 142 MSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRS 201
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGC 220
L+DAL + N+V WGA + GC
Sbjct: 202 LDDALRFFHGMG-ERNSVSWGAAIAGC 227
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 202/325 (62%), Gaps = 12/325 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM---------KNSGISPDQVTMATVLSAC 51
MP RD+ +W +I +QN F EA+ F M + P++ T+ + LSAC
Sbjct: 236 MPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSAC 295
Query: 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111
H G L LG+ IH YV + D +I +AL+DMY KCG+L + VF + KNL WN
Sbjct: 296 GHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSWN 355
Query: 112 SIIEGLAVHGFAHEALAMFDRMIY--ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
S+I LA+HG + A+ +F +I+ + V+PN VTF+ VL+ACTH GLVE+G F M
Sbjct: 356 SLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEMMR 415
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
Y I P++EH+GC++DLL +AG E+A+E++R +P+ V+WG+LL CK+H ++A
Sbjct: 416 RDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEVVWGSLLNACKIHGRSDLA 475
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289
+V +L+ ++P N GY +L N+YAE +W EV K+R +KE K PG SWIE++
Sbjct: 476 EYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRLLKEKNAYK-TPGCSWIEVDN 534
Query: 290 KVYQFAASDKSHPASDEIYSSLSKL 314
+VYQF + D SHP+ +EIY +L +
Sbjct: 535 QVYQFYSFDMSHPSVEEIYKTLESM 559
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 52/269 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+ + ++ +T MIT Y+ + A + M G I P+ VL +C + +
Sbjct: 102 LTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNA 161
Query: 60 GREIHLYVMQIGFD---------IDVY------IGSA-----------------LVDMYA 87
+ +H V++ GF +D Y IGSA ++ YA
Sbjct: 162 TKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYA 221
Query: 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-------- 139
+ G+ D ++ +F + E+++ WN++I G A +GF EA+ +F RM+ +E
Sbjct: 222 RLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDREN 281
Query: 140 -PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT--PEVEHY--GCMVDLLSKAGLL 194
PN T S LSAC H G++ G+ GY P + + ++D+ K G L
Sbjct: 282 KPNKTTLGSALSACGHTGMLHLGK-----WIHGYVFKTYPGQDSFISNALLDMYGKCGNL 336
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A + + N W +L+ LH
Sbjct: 337 KVARRVFDMITLK-NLTSWNSLINCLALH 364
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 200/326 (61%), Gaps = 1/326 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+ISW M+ Y+ N+ EA++ F M+ GI PD VT+ATVL +C + AL LG+ IH
Sbjct: 92 LISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 151
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ + + + +AL+DMYA CG L + VF + +++ W SII HG E
Sbjct: 152 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 211
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ +F++M + +EP+ + F+++L+AC+HAGL++ G+ F SMT + I P++EHY CMV
Sbjct: 212 AIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMV 271
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245
DLL +AG + +A + I +PN +WGALLG C++H N++I +A + L+ L P +G
Sbjct: 272 DLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 331
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
Y LL N+YA RWA+V+ +R M+ GI K+ PG S E+ V+ F D SHP S
Sbjct: 332 YYVLLSNIYARAGRWADVSMVRSVMESKGI-KKLPGVSNAELGDSVHTFHIGDTSHPQSK 390
Query: 306 EIYSSLSKLDEQLKLASYVPELEAML 331
IY LS+L +++ Y PE+EA L
Sbjct: 391 MIYKKLSELLRRIREMGYNPEVEATL 416
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT++I+ Y ++ REA+D F +M G+ PD + +L+AC+H G LD+G
Sbjct: 188 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMG 247
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGL 117
+ + Y M F I + + +VD+ + G + + + + N W +++
Sbjct: 248 KH-YFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGAC 306
Query: 118 AVH 120
+H
Sbjct: 307 RIH 309
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 38/166 (22%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
M RD++SW MI+ ++ F A+D F E+ PD TMA++L +
Sbjct: 18 MQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS--------- 68
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL--VFFKLREKNLFCWNSIIEGL 117
+G A V+ D +LL VF ++R L WN+++
Sbjct: 69 ------------------MGKARVE--------DIALLKGVFDEMRFTGLISWNAMLAVY 102
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ EA+ +F RM + +EP+ VT +VL +C + G+R
Sbjct: 103 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKR 148
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI-YENVEPNGV 143
MYA+CG D + +F +++ +++ WN++I G A G A+ +F ++ + +P+
Sbjct: 1 MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-----CMVDLLSKAGLLEDAL 198
T S+L + G+ R + + E+ G M+ + + + +A+
Sbjct: 61 TMASILPSM--------GKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAV 112
Query: 199 EL---IRSSKFQPNAVIWGALLGGC 220
EL ++ +P+AV +L C
Sbjct: 113 ELFMRMQKDGIEPDAVTLATVLPSC 137
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 222/333 (66%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP ++++SW+ MI CYS+N + EAL+ F +M +N + P+ VTM +VL ACA L AL+
Sbjct: 244 MPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALE 303
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ +H Y+++ G D + + SALV +YA+CG+L+ VF ++ ++++ WNS+I
Sbjct: 304 QGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYG 363
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HGF +A+ +F MI + + P+ ++F+SVL AC+HAGLVEEG+ F SM G+ I P V
Sbjct: 364 IHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSV 423
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L++A ++I + +P +WG+LLG C++H N+E+A A + L
Sbjct: 424 EHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFE 483
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W EV ++++ ++ G++K PG S IE+ RK+Y F + D
Sbjct: 484 LEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQK-VPGRSCIEIRRKIYSFMSVD 542
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P +++++ L KL ++K YVP+ + +L
Sbjct: 543 EFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVL 575
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 22/233 (9%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC----AHLGALDL 59
R I W + + RE LD + M G+ D+ T VL AC A + L
Sbjct: 142 RTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLN 201
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GREIH ++++ GF+ V+I + L+DMYA+ G + + VF ++ KN+ W+++I +
Sbjct: 202 GREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSK 261
Query: 120 HGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGR-------RRFLSMTC 170
+G EAL +F +M+ EN + PN VT +SVL AC +E+G+ RR L
Sbjct: 262 NGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLD--- 318
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SI P V +V + ++ G LE + + + + V W +L+ +H
Sbjct: 319 --SILPVV---SALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYGIH 365
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+I + +AL ++ N P Q T ++ +C +L G ++H +++ G
Sbjct: 53 LIQSLCKQGNLNQALQVLSQEPN----PTQHTYELLILSCTRQNSLPQGIDLHRHLIHDG 108
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
D D ++ + L++MY++ S+D + VF K R++ ++ WN++ L + G+ E L ++
Sbjct: 109 SDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYR 168
Query: 132 RMIYENVEPNGVTFISVLSACT 153
RM V + T+ VL AC
Sbjct: 169 RMNRIGVPSDRFTYTYVLKACV 190
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW +M+ ++ N + +D FN MK +GI+PDQ TM +L AC G
Sbjct: 302 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 361
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + GF+ D+ I +AL+++YAK G L+ S +F ++++++ W +++ G AVH
Sbjct: 362 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVH 421
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA+ +FD M+ E VE + VTF +LSAC+H+GLVEEG++ F M+ Y + P ++H
Sbjct: 422 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 481
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL ++G LEDA ELI+S +P++ +WGALLG C+++ N+E+ +L+ L+
Sbjct: 482 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 541
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ +L N+Y+ W +K+R MKE + R PG S+IE K+++F D+
Sbjct: 542 PSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRL-TRNPGCSFIEHGNKIHRFVVGDQL 600
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SDEI++ L +L ++ A P+ E +L
Sbjct: 601 HPRSDEIHTKLEELIRKIXEAGCAPKTEFVL 631
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 126/228 (55%), Gaps = 11/228 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP RD++SW ++++ S L+AF M+ SG P++VT+ +V+SACA +GALD
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H V+++G + ++L++MY K G LD + +F ++ ++L WNS++
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 319
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEV 178
+G+A + + +F+ M + P+ T +++L ACT GL + + CG++ ++
Sbjct: 320 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN--ADI 377
Query: 179 EHYGCMVDLLSKAGLL---EDALELIRSSKFQPNAVIWGALLGGCKLH 223
+++L +K G L ED E I+ + + W A+L G +H
Sbjct: 378 IIATALLNLYAKLGRLNASEDIFEEIKDR----DTIAWTAMLAGYAVH 421
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 8/189 (4%)
Query: 17 SQNKQFREALDAF-NEMKNSGISPDQVTMATV--LSACAHLGALDLGREIHLYVMQIGFD 73
S N R + F ++ NS + D + + V +S+C ++ IH V++
Sbjct: 115 SSNDSTRTKVAVFLGKLHNSSLLADSIVQSLVFAISSCT---SVSYCSAIHARVIKSLNY 171
Query: 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
D +IG LV MY K G + + +F ++ ++L WNS++ GL+ G+ L F RM
Sbjct: 172 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRM 231
Query: 134 IYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
E+ +PN VT +SV+SAC G ++EG + + ++ + + ++++ K G
Sbjct: 232 RTESGRQPNEVTLLSVVSACAXMGALDEG-KSLHGVVVKLGMSGKAKVVNSLINMYGKLG 290
Query: 193 LLEDALELI 201
L+ A +L
Sbjct: 291 FLDAASQLF 299
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 198/325 (60%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+IISWT+MI+ + +EAL+ F+ M+ +GI D V + + L ACA LG LD G
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + +ID +G L+DMYAKCG L+ ++ VF K+ EK + W ++I G A+H
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +M VEPN +TF +L+AC+HAGLV E + F SM + P +EH
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL++A ELI + +PNA IWGALL C +H NLE+ L+ ++
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G L +++A W + ++R MKE G+ K PG S I + ++F A D+S
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSK-LPGCSVISVNGTAHEFLAGDES 508
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI L ++ E+L+ Y P
Sbjct: 509 HPQIKEIDHMLEQIVERLREEGYKP 533
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 41/250 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TMI YS +K+ EAL ++ M + + T +L AC+ + AL+ ++IH +++
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHII 145
Query: 69 QIGFDIDVYIGSAL-------------------------------VDMYAKCGSLDRSLL 97
++GF ++Y ++L +D Y KCG ++ +
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F + E+N+ W S+I G G EAL +F RM ++ + V +S L AC G+
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGV 265
Query: 158 VEEGRRRFLSMTCGYSITPEVE---HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+++G+ Y E+E GC ++D+ +K G LE+A+E+ R + + +W
Sbjct: 266 LDQGK-----WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVW 319
Query: 214 GALLGGCKLH 223
A++ G +H
Sbjct: 320 TAMISGYAIH 329
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLRE 104
+L C+++ L R+IH +++ G +D S L+ A GSL + VF ++
Sbjct: 24 LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR- 163
N F WN++I G + EAL ++ M+Y +V N TF +L AC+ +EE ++
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140
Query: 164 --RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
+ M G E+ ++++ SK+G ++ A L+ Q + V W +++ G
Sbjct: 141 HAHIIKMGFG----SEIYTTNSLLNVYSKSGDIKSA-RLLFDQVDQRDTVSWNSMIDGYT 195
Query: 222 LHRNLEIAHIAVNEL 236
+E+A+ N +
Sbjct: 196 KCGEIEMAYEIFNHM 210
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 214/332 (64%), Gaps = 1/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW+T+I Y Q F EALD F++M S + P++ TM + L+AC++L ALD G
Sbjct: 370 MHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQG 429
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
+ IH+Y+ + ++ + ++L+DMYAKCG +D + VF + + ++ ++ WN++I G A+
Sbjct: 430 KWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAM 489
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F++M E V PN VTFI++L+AC+H +V+EG+ F M Y I PE+E
Sbjct: 490 HGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIE 549
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLLS++G L+D+ E+I S P+ IWGALL C++++++E + + +
Sbjct: 550 HYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEI 609
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PN+ G LL N+Y+ RW E +R + K+ PG S IE+ ++F D+
Sbjct: 610 DPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDR 669
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S EIYS L ++ +LK+A YVPEL +L
Sbjct: 670 SHPQSREIYSFLDEMISKLKIAGYVPELGEVL 701
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 132/286 (46%), Gaps = 38/286 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQ-FREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALD 58
+P D+ + TMI +S + + +++ F + ++SG P++ + AC + +
Sbjct: 236 IPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVR 295
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-----------SLDRSLL---------- 97
G ++ + +++G D +V++ +AL+ M+ K G ++DR
Sbjct: 296 EGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYV 355
Query: 98 ----------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
+F ++ E+++ W++II G G EAL F +M+ V+PN T +S
Sbjct: 356 GSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVS 415
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L+AC++ +++G+ + + +I ++D+ +K G ++ A + K +
Sbjct: 416 ALAACSNLVALDQGKWIHVYIRRD-NIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVK 474
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
W A++GG +H E A I V E M +E PN + LL
Sbjct: 475 RKVWPWNAMIGGFAMHGKPEEA-INVFEKMKVEKVSPNKVTFIALL 519
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 208/327 (63%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P D+ISW T+I+ Y+QN EA++ +N M+ G I+ +Q T +VL AC+ GAL
Sbjct: 328 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 387
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G ++H +++ G +DV++ ++L DMY KCG L+ +L +F+++ N WN++I
Sbjct: 388 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGF 447
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+ +F M+ E V+P+ +TF+++LSAC+H+GLV+EG+ F M Y ITP ++
Sbjct: 448 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 507
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+ +AG LE AL+ I+S QP+A IWGALL C++H N+++ IA L +
Sbjct: 508 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 567
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP + GY LL NMYA +W V +IR G+ K PG S +E++ KV F ++
Sbjct: 568 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK-TPGWSSMEVDNKVEVFYTGNQ 626
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP +E+Y L+ L +LK+ YVP+
Sbjct: 627 THPMYEEMYRELTALQAKLKMIGYVPD 653
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 138/257 (53%), Gaps = 12/257 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N+Q A+ F EM+ S I PD +T+ ++ S + LG +
Sbjct: 226 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 285
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + + ++ G F D+ IG+A+V MYAK G +D + VF L ++ WN+II G A
Sbjct: 286 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQ 345
Query: 120 HGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSIT 175
+GFA EA+ M++ M E + N T++SVL AC+ AG + +G + R L +
Sbjct: 346 NGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK----NGLY 401
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+V + D+ K G LEDAL L + N+V W L+ H + E A + E
Sbjct: 402 LDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKE 460
Query: 236 LMI--LEPNNSGYCTLL 250
++ ++P++ + TLL
Sbjct: 461 MLDEGVKPDHITFVTLL 477
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+ +W MI+ Y + E + F+ M +SG++PD T +VL AC + +D G +
Sbjct: 48 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV--ID-GNK 104
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++ GF DVY+ ++L+ +Y++ ++ + ++F ++ +++ WN++I G G
Sbjct: 105 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 164
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
A EAL + + + + VT +S+LSACT AG G
Sbjct: 165 AKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRG 199
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ Y Q+ +EAL N ++ + D VT+ ++LSAC G + G
Sbjct: 144 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y ++ G + ++ L VF ++ ++L WNSII+ ++
Sbjct: 200 VTIHSYSIKHGLESEL---------------LRDCQKVFDRMYVRDLISWNSIIKAYELN 244
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A+++F M ++P+ +T IS+ S + G + R + ++ G+ + ++
Sbjct: 245 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE-DIT 303
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNA--VIWGALLGG 219
+V + +K GL++ A + + PN + W ++ G
Sbjct: 304 IGNAVVVMYAKLGLVDSARAVF---NWLPNTDVISWNTIISG 342
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 209/329 (63%), Gaps = 3/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+RD I+W I+ Y+QN EA+ F+ MK +G+ P++VT+ VLSACA +GALDLG
Sbjct: 280 MPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLG 339
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++ Y G D+++ +AL+DMYAKCGSL+ + VF + KN WN++I LA H
Sbjct: 340 KQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASH 399
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EAL++F+RM E + PN +TF+S+LSAC HAGLV+EG R F M+ + + P++
Sbjct: 400 GKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKI 459
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLLS+AG L +A ++I +P+ V GAL C+ +N++I + L+
Sbjct: 460 EHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLE 519
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+P+NSG + +Y ++ W + ++R M+E G+ K PG SWIE+ ++ +F + D
Sbjct: 520 LDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTK-TPGCSWIEVGNQLREFLSGD 578
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPEL 327
S ++ + + L E+LK YVP++
Sbjct: 579 GLTLDSIDVRNIIDLLYEELKKEGYVPKI 607
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 140/257 (54%), Gaps = 17/257 (6%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
+D++SW ++++ Y++ REA++ F ++ SG PD++++ +VL AC LG L+LGR
Sbjct: 181 KDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRW 240
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+ +V++ G ++ YIGSAL+ MY+KCG L S +F + ++ WN+ I A +G
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGM 300
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH-- 180
A EA+++F M V+PN VT +VLSAC G ++ G++ Y+ ++H
Sbjct: 301 ADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ-----MDEYATHRGLQHDI 355
Query: 181 --YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++D+ +K G LE A + + N W A++ H + A +++ E M
Sbjct: 356 FVATALIDMYAKCGSLESAQRVFNDMP-RKNDASWNAMISALASHGKAKEA-LSLFERMS 413
Query: 239 LE-----PNNSGYCTLL 250
E PN+ + +LL
Sbjct: 414 DEGGSARPNDITFVSLL 430
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
L +++MK ISP+ T V ACA+L + + R H V ++G D D + +++V
Sbjct: 101 TLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVT 160
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGV 143
MY +CG + VF ++ EK+L WNS++ G A GFA EA+ +F R+ E+ EP+ +
Sbjct: 161 MYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEM 220
Query: 144 TFISVLSACTHAGLVEEGR 162
+ +SVL AC G +E GR
Sbjct: 221 SLVSVLGACGELGDLELGR 239
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 198/325 (60%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+IISWT+MI+ + +EAL+ F+ M+ +GI D V + + L ACA LG LD G
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + +ID +G L+DMYAKCG L+ ++ VF K+ EK + W ++I G A+H
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +M VEPN +TF +L+AC+HAGLV E + F SM + P +EH
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL++A ELI + +PNA IWGALL C +H NLE+ L+ ++
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G L +++A W + ++R MKE G+ K PG S I + ++F A D+S
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSK-LPGCSVISVNGTAHEFLAGDES 508
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI L ++ E+L+ Y P
Sbjct: 509 HPQIKEIDHMLEQIVERLREEGYKP 533
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 41/250 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TMI YS +K+ EAL ++ M + + T +L AC+ + A + ++IH +++
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHII 145
Query: 69 QIGFDIDVYIGSAL-------------------------------VDMYAKCGSLDRSLL 97
++GF ++Y ++L +D Y KCG ++ +
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F + E+N+ W S+I G G EAL +F RM ++ + V +S L AC G+
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGV 265
Query: 158 VEEGRRRFLSMTCGYSITPEVE---HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+++G+ Y E+E GC ++D+ +K G LE+A+E+ R + + +W
Sbjct: 266 LDQGK-----WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVW 319
Query: 214 GALLGGCKLH 223
A++ G +H
Sbjct: 320 TAMISGYAIH 329
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLRE 104
+L C+++ L R+IH +++ G +D S L+ A GSL + VF ++
Sbjct: 24 LLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR- 163
N F WN++I G + EAL ++ M+Y +V N TF +L AC+ EE ++
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140
Query: 164 --RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
+ M G E+ ++++ SK+G ++ A L+ Q + V W +++ G
Sbjct: 141 HAHIIKMGFG----SEIYTTNSLLNVYSKSGDIKSA-RLLFDQVDQRDTVSWNSMIDGYT 195
Query: 222 LHRNLEIAHIAVNEL 236
+E+A+ N +
Sbjct: 196 KCGEIEMAYEIFNHM 210
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 204/328 (62%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD I W +M+ +QN EAL F M +SGI P VT ++++ AC +L +L LG
Sbjct: 234 LPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLG 293
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H YV++ GFD +V+I S+L+DMY KCG++ + +F +++ ++ W ++I G A+H
Sbjct: 294 KQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALH 353
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +FDRM N++PN +TF++VL+AC+HAGLV++G + F SM+ Y I P +EH
Sbjct: 354 GPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEH 413
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ + D L + G LE+A I K +P A +W LL CK+H+N +A ++ LE
Sbjct: 414 HAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLE 473
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G +L N Y+ RW E +R +M++ G++K P SWIE++ K + F A DKS
Sbjct: 474 PRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKE-PACSWIEVKNKQHVFVAHDKS 532
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP + I +L+ EQ+ YVP +
Sbjct: 533 HPWYERIIDALNVFSEQMVRQGYVPNTD 560
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 131/252 (51%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW T++ +++ + EAL EM G PD T+++VL A + G
Sbjct: 133 MPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRG 192
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H + + GF DV++GS+L+DMYA C D S+ VF L ++ WNS++ G A +
Sbjct: 193 MELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQN 252
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F RM++ ++P VTF S++ AC + + G++ + G V
Sbjct: 253 GSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG-GFDGNVFI 311
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN--ELMI 238
++D+ K G + A + + P+ V W A++ G LH A + + EL
Sbjct: 312 SSSLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMIMGHALHGPAREALVLFDRMELGN 370
Query: 239 LEPNNSGYCTLL 250
L+PN+ + +L
Sbjct: 371 LKPNHITFLAVL 382
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 20/231 (8%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNS----GISPDQVTMATVLSACAHLGALDLGREI 63
SW I + F A+ F M+ S S ++ L +CA LG LG +
Sbjct: 21 SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGS-------LDRSLLV-------FFKLREKNLFC 109
H ++ G D + +AL+++Y K + +D S +V F ++ EK++
Sbjct: 81 HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WN+++ G A G EAL + M + +P+ T SVL V G
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRG-MELHGFA 199
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+V ++D+ + + ++++ + + +A++W ++L GC
Sbjct: 200 TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGC 249
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 200/327 (61%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT+++ C QN + EA+D F EM++ GI P+ VT+ VL A A++ AL GR H
Sbjct: 256 NVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAH 315
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ GF D+Y+GSALVDMYAKCG + + ++F + +N+ WN++I G A+HG A
Sbjct: 316 CFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAE 375
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F M +P+ VTF VL AC+ AG EEGR F M + I+P +EHY CM
Sbjct: 376 NAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACM 435
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LL +AG L+DA ++I F+P+ IWG+LLG C++H N+ +A +A L LEP N+
Sbjct: 436 VTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENA 495
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W V ++R MK +G++K G SWIE++ KV+ A D SHP
Sbjct: 496 GNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKE-KGCSWIEIKNKVHMLLAGDSSHPMM 554
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
I L L +++ + P + +L
Sbjct: 555 AAITEKLKHLTMEMRRLGFAPSTDYVL 581
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 45/264 (17%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++I+W +++ +++ + R+A+ A M G PD ++ LSA +G + +G ++H
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLH 179
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
YV++ G +D + +AL+DMY KCG D + VF +
Sbjct: 180 GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVS 239
Query: 102 --LR----------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
LR E N+ W SI+ +G EA+ +F M E +EPN VT VL
Sbjct: 240 EALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELIRSSK 205
A + + GR S C +S+ H +VD+ +K G + DA + +
Sbjct: 300 PAFANIAALMHGR----SAHC-FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354
Query: 206 FQPNAVIWGALLGGCKLHRNLEIA 229
++ N V W A++GG +H E A
Sbjct: 355 YR-NVVSWNAMIGGYAMHGEAENA 377
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW MI Y+ + + A+ F M++S PD VT VL AC+ G + G
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R + MQ I + + +V + + G LD + + ++ E + W S++
Sbjct: 413 RS-YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSC 471
Query: 118 AVHG 121
VHG
Sbjct: 472 RVHG 475
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
N +++ PD + + L +C+ AL L R +H G D ++ S+L+ Y +
Sbjct: 11 LNFLRHVSFPPDPRLLPSALKSCS---ALRLARALHAAAAVAGVSRDAFVASSLLHAYLR 67
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
G+ + V + + + W+++I A HG A A + +RM + VEPN +T+ +
Sbjct: 68 FGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGL 127
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
+S +G + + M G P+ C + + G
Sbjct: 128 VSGLNRSGRARDAVLALVRMH-GEGFLPDATGVSCALSAVGDVG 170
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 205/329 (62%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
+D+ +W+ +I Y +N + EAL F E+ S + P++VT+ V+SACA LG L+ GR
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRW 303
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y+ + V + ++L+DM++KCG +D + +F + K+L WNS++ G A+HG
Sbjct: 304 VHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGL 363
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EALA F M +++P+ +TFI VL+AC+HAGLV+EG++ F + Y + + EHYG
Sbjct: 364 GREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYG 423
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AGLL +A E IR QP+ IWG++LG C+++ NLE+ A L+ LEP
Sbjct: 424 CMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPT 483
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N G LL N+YA+ W EV K+R M E GI+K PG S + ++ + F A D SHP
Sbjct: 484 NDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQK-TPGCSSVVIDNIAHSFLAGDCSHP 542
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
EI L ++ E+LKLA YV + +L
Sbjct: 543 EIAEISIMLRQVREKLKLAGYVADTSEVL 571
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 136/227 (59%), Gaps = 9/227 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ + WT+MI+ Y +N EAL + +M+ G SPD+VTMAT++SACA L L +G
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ ++ I +GSALV+MYAKCG L + VF KL +K+++ W+++I G +
Sbjct: 200 MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKN 259
Query: 121 GFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTC-GYSITP 176
+ EAL +F + N+ PN VT ++V+SAC G +E GR +++ T G+S++
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSL 319
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ SK G ++ A + S ++ + + W +++ G LH
Sbjct: 320 N----NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALH 361
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+++W +M+ + + R AL ++ EM + S PD+ T ++L CA L +G+ +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ D+YI + L++MYA CG L + +F ++ +N W S+I G +
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSAC 152
+EAL ++ +M + P+ VT +++SAC
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSAC 190
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISW +M+ ++ + REAL F M+ + + PD++T VL+AC+H G + G
Sbjct: 343 MSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEG 402
Query: 61 REI 63
+++
Sbjct: 403 KKL 405
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 207/328 (63%), Gaps = 5/328 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +I W +I Y+ N + A+ + +M + G+ PD T VL ACA L A++ G
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG 195
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN---LFCWNSIIEGL 117
REIH +V+Q G++ DV++G+AL+DMYAKCG + + VF K+ ++ + WN++I G
Sbjct: 196 REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGY 255
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A+HG A EAL +F+ M +P+ +TF+ VLSAC+H GL+EEG F +M Y I P
Sbjct: 256 AMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPT 314
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V+HY CMVDLL +G L++A LI K P++ +WGALL CK+H N+E+ IA+ L+
Sbjct: 315 VQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLI 374
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
LEP+++G +L N+YA+ +W V K+R M + ++K SWIE++ KV+ F +
Sbjct: 375 ELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSI-ACSWIEVKNKVHAFLSG 433
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVP 325
D SHP SDEIYS L ++ +K A Y P
Sbjct: 434 DTSHPLSDEIYSELERVGGLMKEAGYSP 461
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 32/266 (12%)
Query: 8 SWTTMITCYSQNKQFREALDAFN--EMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
S+T+ + N+ +A+ + + +++ ++P A++L +C A+ G+++H
Sbjct: 40 SFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHA 99
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V GF D I + LV++Y C SL + L+F ++ + N+F WN +I G A +G
Sbjct: 100 QVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEA 159
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ ++ +M + P+ TF VL AC +E G R +V ++
Sbjct: 160 AVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG-REIHEHVVQTGWEKDVFVGAALI 218
Query: 186 DLLSKAGLLEDALE-----LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
D+ +K G + A E L+R + V W A++ G +H
Sbjct: 219 DMYAKCGCVGSAREVFDKILVRDAVL---VVSWNAMITGYAMH----------------- 258
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKI 266
G+ T L+++ E++R A+ I
Sbjct: 259 ----GHATEALDLFEEMNRVAKPDHI 280
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ISW MI Y N EA+ F +M+ G+ PD VT+A++L AC L AL LG
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ + ++ + +AL+DMYAKCG L+ + VF K+R +++ W S++
Sbjct: 326 RRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++A+A+F +M+ P+ + F+SVLSAC+H GL+++GR F MT Y I P +EH
Sbjct: 386 GQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDL +AG +E+A I+ +PN +WGALL C++H ++I +A + L L
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLA 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SGY LL N+YA+ W +V +R AMK++GI K+ PG S +E+ +V+ F A D+
Sbjct: 506 PKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI-KKVPGISNVELNGQVHTFLAGDQY 564
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY L L ++K Y+P+ E+ L
Sbjct: 565 HPQAKNIYGELDVLVGKMKELGYIPQTESAL 595
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 127/268 (47%), Gaps = 29/268 (10%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ + MI Y N + EAL F M + +PD T VL AC+ L L +G ++
Sbjct: 100 KNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQV 159
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++G D +++IG+ALV MY KCG L + V ++ +++ WNS++ G A G
Sbjct: 160 HDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQF 219
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEVEHY 181
+AL + M N+ + T S+ + L V+ F MT I+ +
Sbjct: 220 DDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLIS-----W 274
Query: 182 GCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRNLEI 228
M+ + + +A+ L + +P+AV +LL C +LH+ +E
Sbjct: 275 NVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEK 334
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAE 256
++ N ++LE LL+MYA+
Sbjct: 335 GNLQPN--LLLE-------NALLDMYAK 353
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
ID + L+ Y+ G + +F + EKN+ +N +I + EAL++F M
Sbjct: 69 IDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVM 128
Query: 134 IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
+ P+ TF VL AC+ + G + ++ + + +V + K G
Sbjct: 129 LSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIV-KVGLDTNLFIGNALVAMYGKCGC 187
Query: 194 LEDALELIRSSKFQPNAVIWGALLGG 219
L +A +++ ++ + V W +++ G
Sbjct: 188 LREARKVLDQMPYR-DVVSWNSMVAG 212
>gi|413953445|gb|AFW86094.1| hypothetical protein ZEAMMB73_140838 [Zea mays]
Length = 508
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 219/332 (65%), Gaps = 4/332 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R ++SWT M++ Y+QN + EA+ F +M +G+ P+++T+++VL ACA LGAL L
Sbjct: 178 MPDRSVVSWTAMVSGYAQNGRHEEAVRTFLDMWDGAGVRPNELTVSSVLPACAALGALAL 237
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC-WNSIIEGLA 118
GR++ Y G +VY+ +ALV+MYAKCGS+ R+ VF + + C WNS+I A
Sbjct: 238 GRKVERYARGRGMLRNVYVANALVEMYAKCGSIRRAWKVFRGMGTRRDLCSWNSMIMAFA 297
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG EALA+F ++ +P+G+TF+ V+ ACTH GLV+EG+ F SM + + P +
Sbjct: 298 VHGLWTEALALFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMRGEFGLKPRI 357
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCMVDLL +AGLL++A LI S +P+AVIWGALLG C H N E+A IAV +LM
Sbjct: 358 EHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNFELAEIAVEKLMH 417
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP+N+ +L N+YA +W V ++ +KE K+ G S+IE++ ++++F D
Sbjct: 418 LEPHNTANLVILSNIYASCGKWDGVARVWKLLKEKD-HKKSAGYSFIELDGRMHKFLVED 476
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYV-PELEA 329
KSHP S+++Y +L + +KL S PE+E+
Sbjct: 477 KSHPRSEKVYDALDSITLAMKLVSLENPEVES 508
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 212/331 (64%), Gaps = 5/331 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++ WT MI Y Q +F EA+ F EM+ + PD+ + ++L+ CA GA++ G+
Sbjct: 331 PIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGK 390
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH ++ + ID +G+AL++MYAKCG ++++L +F+ LR K+ W SII GLA++G
Sbjct: 391 WIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNG 450
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F +M V P+ +TFI VLSAC+H GLVEEGR+ F SM Y I P+VEHY
Sbjct: 451 KTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHY 510
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAV---IWGALLGGCKLHRNLEIAHIAVNELMI 238
GC+VDLL +AGLL +A ELI+ + A+ ++G+LL C+++ N+E+ +L+
Sbjct: 511 GCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVK 570
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
E ++S TLL N+YA RW +VTK+R MK+LG+ K+ PG S IE++ +++F +
Sbjct: 571 FESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGV-KKTPGCSSIEVDSIIHEFFSGH 629
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEA 329
SHP EIY L+ + + L L S E+E
Sbjct: 630 PSHPEMREIYYMLNIMAKPL-LGSAKNEMEG 659
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 39/257 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP RD+ISW MI+ Y + ++F +A++ F M+ SG+ PD+ T+ + LSAC L L+L
Sbjct: 198 MPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLEL 257
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA- 118
G++IH YV IG+AL+DMY KCG L + VF ++ KN+ CW +++ G A
Sbjct: 258 GKKIHHYVRD-NVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYAN 316
Query: 119 -------------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISV 148
++G+ EA+A+F M V+P+ +S+
Sbjct: 317 CGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSL 376
Query: 149 LSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
L+ C G +E+G+ F+ I + ++++ +K G +E ALE+ +
Sbjct: 377 LTGCAQTGAIEQGKWIHEFIDEN---RIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRV 433
Query: 207 QPNAVIWGALLGGCKLH 223
+ A W +++ G ++
Sbjct: 434 KDTAS-WTSIICGLAMN 449
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 129/277 (46%), Gaps = 12/277 (4%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ + +I +++ ++ L F++++ G+ PD T V A +LG + ++
Sbjct: 102 LLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRG 161
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V + G + D Y+ ++L+DMYA+ D ++F ++ ++++ WN +I G +
Sbjct: 162 LVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFED 221
Query: 126 ALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F RM E+ + P+ T +S LSACT +E G++ + TP + + +
Sbjct: 222 AINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--AL 279
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP-NN 243
+D+ K G L A + N + W ++ G LE A EL P +
Sbjct: 280 LDMYCKCGCLSIARAVFEEMP-SKNVICWTTMVSGYANCGELEEAR----ELFEGSPIRD 334
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCP 280
T ++N Y + +R+ E + +E+ I K P
Sbjct: 335 VVIWTAMINGYVQFNRFDEAVAL---FREMQIRKVKP 368
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 211/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SWT+MI+CY N +AL+ F+ MK +G+ PD VT+ ++LSA L L G
Sbjct: 422 IECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKG 481
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ GF ++ I + LVDMYA+CGS++ + +F + +NL W ++I +H
Sbjct: 482 KEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMH 541
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ A+ +F RM E + P+ +TF+++L AC+H+GLV EG+ M C Y + P EH
Sbjct: 542 GYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEH 601
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL + LE+A ++++S + +P +W ALLG C++H N EI +A +L+ L+
Sbjct: 602 YTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELD 661
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+N G L+ N++A RW +V ++R+ MK G+ K PG SWIE+ K++ F + DK
Sbjct: 662 LDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKN-PGCSWIEVGNKIHAFLSRDKL 720
Query: 301 HPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
HP D+IY L+++ E+LK YV + + +L
Sbjct: 721 HPECDKIYQKLAQVTEKLKREGGYVAQTKFVL 752
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 125/230 (54%), Gaps = 5/230 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWTT Y+QNK + +AL+ +++ G+ D + ++L AC L L
Sbjct: 322 MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKI 381
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y ++ G D + + ++D+Y +CG +D ++ +F + K++ W S+I +
Sbjct: 382 KEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHN 440
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G A++AL +F M +EP+ VT +S+LSA +++G+ + G+ + +
Sbjct: 441 GLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS 500
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ +VD+ ++ G +EDA ++ +K N ++W A++ +H E A
Sbjct: 501 N--TLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMISAYGMHGYGEAA 547
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 139/258 (53%), Gaps = 20/258 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +DI++W +M+T + QN + EAL+ F +++N+ + PDQV++ +++ A LG L G
Sbjct: 221 LEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y ++ GFD ++ +G+ L+DMYAKC + F + K+L W + G A +
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI-----T 175
+AL + ++ E ++ + S+L AC GL G+ + + GY+I
Sbjct: 341 KCYLQALELLRQLQMEGMDVDATMIGSILLACR--GLNCLGKIKEIH---GYTIRGGLSD 395
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
P +++ ++D+ + G+++ A+ + S + + + V W +++ C +H L + V
Sbjct: 396 PVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMI-SCYVHNGLANKALEVFS 451
Query: 236 LMI---LEPNNSGYCTLL 250
M LEP+ Y TL+
Sbjct: 452 SMKETGLEPD---YVTLV 466
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 89/158 (56%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW ++I+ YS N EAL F+EM +G+ + T A L AC + LG +IH
Sbjct: 124 DVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIH 183
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G +DVY+ +ALV MY + G + + ++F L K++ WNS++ G +G
Sbjct: 184 AAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYS 243
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL F + +++P+ V+ IS++ A G + G+
Sbjct: 244 EALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGK 281
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R I +W M+ Y N + AL+ + EM++ G+S D T +L AC + L G
Sbjct: 18 MSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCG 77
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN-LFCWNSIIEGLAV 119
EIH ++ G D V++ ++LV +YAKC ++ + +F ++ +N + WNSII +
Sbjct: 78 AEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSG 137
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G EAL +F M+ V N TF + L AC + ++ G + I +
Sbjct: 138 NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ----------IHAAIL 187
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
G ++D+ L+ +R K AVI+G L G
Sbjct: 188 KSGRVLDVYVANALVA---MYVRFGKMPEAAVIFGNLEG 223
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 43/217 (19%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MY KCGS+ + ++F K+ E+++F WN+++ G +G A AL M+ M + V + T
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC---------MVDLLSKAGLLE 195
F +L AC G+VE+ + CG I YGC +V L +K +
Sbjct: 61 FPVLLKAC---GIVED-------LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDIN 110
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255
A +L + + V W +++ + +G CT L +++
Sbjct: 111 GARKLFDRMYVRNDVVSWNSIISA---------------------YSGNGMCTEALCLFS 149
Query: 256 EVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVY 292
E+ + VT L + C SS+I++ +++
Sbjct: 150 EMLKAGVVTNTYTFAAAL---QACEDSSFIKLGMQIH 183
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW MI Y+QN + + + MK G PD+VT+ T+L AC L L+ G
Sbjct: 456 MPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++G + D + ++L+ MY+KCG + + VF K+ ++ WN+++ G H
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F RM+ E V PN +T +V+SAC+ AGLV+EGR F M + +TP +H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A E I+S +P+ +W ALLG CK H N+++A A + ++ LE
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ + L N+YA+ RW + TK+R M + G++K G S IE++ +++ F A D +
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKD-RGESSIEIDGRIHTFVAEDCA 754
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D I++ L L +++K A Y P++ +L
Sbjct: 755 HPEIDAIHAELETLTKEMKEAGYTPDMRFVL 785
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 124/220 (56%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W++MI Y+ N +A D F M ++ I P+++T ++L AC + L+ G
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKG 176
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH V +G + DV + +AL+ MY+KCG + + VF K+ E+N+ W +II+ A H
Sbjct: 177 RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQH 236
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+EA ++++M+ + PN VTF+S+L++C + G RR S + ++
Sbjct: 237 RKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG-RRIHSHISERGLETDMIV 295
Query: 181 YGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGG 219
++ + K +++A E+ R SK + + W A++ G
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMSK--RDVISWSAMIAG 333
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 128/223 (57%), Gaps = 9/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT +I +Q+++ EA + + +M +GISP+ VT ++L++C AL+ G
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH ++ + G + D+ + +AL+ MY KC S+ + +F ++ ++++ W+++I G A
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQS 337
Query: 121 GFA-----HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSI 174
G+ E + +RM E V PN VTF+S+L ACT G +E+GR+ ++ G+ +
Sbjct: 338 GYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFEL 397
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ + ++ +K G + +A E + S N V W + L
Sbjct: 398 DRSLQ--TAIFNMYAKCGSIYEA-EQVFSKMANKNVVAWTSFL 437
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 119/232 (51%), Gaps = 4/232 (1%)
Query: 21 QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80
+ REA+ +K G+ + T V+ CA + G+ +H + ++G +ID+Y+G+
Sbjct: 36 RLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGN 95
Query: 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP 140
+L++ Y+K + + VF ++ +++ W+S+I A + +A F+RM N+EP
Sbjct: 96 SLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEP 155
Query: 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
N +TF+S+L AC + ++E+G R+ ++ + +V ++ + SK G + A E+
Sbjct: 156 NRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLL 250
+ N V W A++ HR L A +++ + PN + +LL
Sbjct: 215 FHKMT-ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLL 265
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 1 MPARDIISWTTMITCYSQN-----KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG 55
M RD+ISW+ MI Y+Q+ + E M+ G+ P++VT ++L AC G
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYA---------------------------- 87
AL+ GR+IH + ++GF++D + +A+ +MYA
Sbjct: 379 ALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLS 438
Query: 88 ---KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
KCG L + VF ++ +N+ WN +I G A +G + + M E +P+ VT
Sbjct: 439 MYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVT 498
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
I++L AC +E G + + + + ++ + SK G + +A +
Sbjct: 499 VITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEA-RTVFDK 556
Query: 205 KFQPNAVIWGALLGGCKLH 223
+ V W A+L G H
Sbjct: 557 MSNRDTVAWNAMLAGYGQH 575
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 202/326 (61%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISW TMI Y++N EAL F EM+ PD T+A +L ACA L ALD G
Sbjct: 515 MKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG 573
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH Y ++ G+ D Y+ +A+VDMY KCG L + +F + K+L W +I G +H
Sbjct: 574 REIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMH 633
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ F++M +EP+ V+FIS+L AC+H+GL++EG + F M I P +EH
Sbjct: 634 GYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEH 693
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL++ G L A + I++ +P+A IWGALL GC++H ++++A + LE
Sbjct: 694 YACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELE 753
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+GY LL N+YAE +W EV K+R + + G++K PG SWIE++ K+ F A D S
Sbjct: 754 PENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKN-PGCSWIEIKGKINIFVAGDCS 812
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
P + +I L +L ++K Y P+
Sbjct: 813 KPQAKKIELLLKRLRSKMKEEGYSPK 838
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 136/255 (53%), Gaps = 11/255 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SWT+MIT Y + A+ F+EMK+ G+ PD + ++L+ACA G L G
Sbjct: 414 MDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG 473
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + + + ++ +AL DMYAKCGS+ + VF +++K++ WN++I G +
Sbjct: 474 KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKN 533
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+EAL +F M E+ +P+G T +L AC +++GR ++ GYS V
Sbjct: 534 SLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVT 592
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNA--VIWGALLGGCKLHRNLEIAHIAVNELM 237
+ +VD+ K GLL A L PN V W ++ G +H A N++
Sbjct: 593 N--AVVDMYVKCGLLVLARSLF---DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMR 647
Query: 238 I--LEPNNSGYCTLL 250
+ +EP+ + ++L
Sbjct: 648 MTGIEPDEVSFISIL 662
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 11/221 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +MI+ Y +N ++ F +M G+ D TM V ACA++G L LG+ +
Sbjct: 315 RDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVL 374
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H Y ++ D +V + L+DMY+KCG L+ ++ VF ++ EK + W S+I G G
Sbjct: 375 HSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGL 434
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH-- 180
+ A+ +FD M V P+ S+L+AC G ++ G+ + Y +E
Sbjct: 435 SDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGK-----IVHDYIRENNLETNS 489
Query: 181 --YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ D+ +K G ++DA ++ K + + + W ++GG
Sbjct: 490 FVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 106/214 (49%), Gaps = 1/214 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W MI+ YS + + E+++ F +M GI P+ T +++L A + ++ GR++H
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHG 275
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ ++GF+ + ++L+ Y + + +F +L ++++ WNS+I G +G
Sbjct: 276 LICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDR 335
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
+ +F +M+ V+ + T ++V AC + G + G+ ++ EV ++
Sbjct: 336 GIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLL 395
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
D+ SK G L A+ + + V W +++ G
Sbjct: 396 DMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITG 428
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF 72
+ C SQN F D ++L CA ++ GR + + G
Sbjct: 139 LLCSSQNSNF-----------------DLGAYCSILQLCAERKSIRDGRRVRSIIESSGV 181
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
ID +G LV MY KCG L +VF KL E +F WN +I + G E++ +F +
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQ 241
Query: 133 MIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
M+ ++PN TF S+L VEEGR+
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 199/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WTTM+ Y Q+ Q AL FN M GI P+QVT + AC++L L G
Sbjct: 279 MPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG 338
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + F D +I S L+++YAKCG + + VF +EK++ WN +I A H
Sbjct: 339 QQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHH 398
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ ++++M +PN VT++ +LSAC+H+GLV+EG R F M SI EH
Sbjct: 399 GVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEH 458
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DL S+AG L DA LI K +P++ +W ALLGGC H N I +A L+ E
Sbjct: 459 YTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAE 518
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN+G TLL N+YA +W E KIR M + G++K+ PG SWIE+ KV+ F + DKS
Sbjct: 519 PNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQ-PGCSWIEVANKVHVFVSRDKS 577
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H SD I S L + + +++A VP L
Sbjct: 578 HSESDLINSLLQDIHDIMRMADTVPRDHTQL 608
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 138/317 (43%), Gaps = 40/317 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WTTM+ +++ EA F+ M + V+ ++S A +D
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNV----VSWNAMISGYARNHMID-- 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E H M++ D+ + ++ + + +L+R+ +F K+ +N+ W +++ G
Sbjct: 240 -EAHDLFMKMPTR-DIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQS 297
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F+ M+ + + PN VTF+ + AC++ + EG ++ M C +
Sbjct: 298 IQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG-QQVHQMICKTPFQFDTFI 356
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+++L +K G + A ++ SK + + + W ++ H + + I + E M
Sbjct: 357 ESTLMNLYAKCGEIILARKVFNLSK-EKDVISWNGMIAAYA-HHGVGLEAIHLYEKMQEN 414
Query: 239 -LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
+PN+ Y LL C S ++ +++++
Sbjct: 415 GYKPNDVTYVGLL--------------------------SACSHSGLVDEGLRIFEYMVK 448
Query: 298 DKSHPASDEIYSSLSKL 314
D+S DE Y+ L L
Sbjct: 449 DRSIAVRDEHYTCLIDL 465
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 112/274 (40%), Gaps = 50/274 (18%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQ----VTMATVLSACAHLGAL 57
P RD++SWT ++ Y+ +A F+ PD VT +LS A G +
Sbjct: 62 PDRDVVSWTALVAAYACQGMLHDARALFDR-------PDARRNVVTWTALLSGYARAGRV 114
Query: 58 D-----LGREIHLYVMQIGFDIDVYIGSA----------------------LVDMYAKCG 90
D GR V+ ++ Y S L+ + G
Sbjct: 115 DEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSG 174
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
++D++ +F ++ E+N+ W +++ G+A G +EA A+FD M NV V++ +++S
Sbjct: 175 NIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNV----VSWNAMIS 230
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+++E F+ M T ++ + M+ + LE A EL + N
Sbjct: 231 GYARNHMIDEAHDLFMKMP-----TRDIASWNIMITGFIQNKNLERAQELFDKMP-RRNV 284
Query: 211 VIWGALLGGCKLHRNLEIAHIAVNELMI--LEPN 242
V W ++ G E A N ++I + PN
Sbjct: 285 VTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPN 318
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A G + + +F + ++++ W +++ A G H+A A+FDR + N VT+
Sbjct: 46 AAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR---PDARRNVVTWT 102
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204
++LS AG V+E F M PE V + M++ + +G + DA L
Sbjct: 103 ALLSGYARAGRVDEAEALFGRM-------PERNVVSWNTMLEAYTSSGRVGDACTLFNGM 155
Query: 205 KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVT 264
+ +A W LL N++ A + + E N + T M A ++R V
Sbjct: 156 PVR-DAGSWNILLAALVRSGNIDKARKLFDRMP--ERNVMAWTT----MVAGIARSGSVN 208
Query: 265 KIR 267
+ R
Sbjct: 209 EAR 211
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 204/323 (63%), Gaps = 2/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +DI+SW TMI YSQN EAL+ F +M+ PD +TMA VL ACA L ALD G
Sbjct: 458 IPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKG 516
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH ++++ G+ D+++ ALVDMYAKCG L + L+F + +K+L W +I G +H
Sbjct: 517 REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMH 576
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +EA++ F+ M +EP+ +F ++L+AC+H+GL+ EG + F SM + P++EH
Sbjct: 577 GFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEH 636
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL++ G L A + I S +P+ IWG LL GC++H ++++A + LE
Sbjct: 637 YACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELE 696
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+ Y +L N+YAE +W EV K+R M++ G K+ PG SWIE+ K F A +
Sbjct: 697 PDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGF-KQNPGCSWIEVGGKFNIFVAGNSK 755
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
HP + +I LSKL Q++ Y
Sbjct: 756 HPQAKKIDVLLSKLTMQMQNEDY 778
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 156/289 (53%), Gaps = 23/289 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M I+SWT++I Y + + +A+ F+EM++ G+ PD T+ +++ ACA +LD G
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 416
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H YV++ G ++ + +AL++MYAKCGS++ + LVF K+ K++ WN++I G + +
Sbjct: 417 RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
+EAL +F M + +P+ +T VL AC +++GR RR GY
Sbjct: 477 LLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRR------GYF 529
Query: 174 ITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
H C +VD+ +K GLL A +L+ + + + W ++ G +H A
Sbjct: 530 SDL---HVACALVDMYAKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAIST 585
Query: 233 VNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK-ELGIEKR 278
NE+ I +EP+ S + + +LN + E K +M+ E G+E +
Sbjct: 586 FNEMRIAGIEPDESSF-SAILNACSHSGLLNEGWKFFNSMRNECGVEPK 633
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 112/215 (52%), Gaps = 2/215 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW +MI N L+ F +M G+ D T+ +VL ACA++G L LGR +H
Sbjct: 260 DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALH 319
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ F +V + L+DMY+KCG+L+ + VF K+ + + W SII G
Sbjct: 320 GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYS 379
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+ +FD M + V P+ T S++ AC + +++G R S + + +
Sbjct: 380 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG-RDVHSYVIKNGMGSNLPVTNAL 438
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+++ +K G +E+A L+ S + V W ++GG
Sbjct: 439 INMYAKCGSVEEA-RLVFSKIPVKDIVSWNTMIGG 472
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 5/195 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +++ Y++ FRE++ F +M+ G+ + T VL A LG + + +H YV+
Sbjct: 163 WNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVL 222
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF + + ++L+ Y K G ++ + +F +L E ++ WNS+I G V+GF+ L
Sbjct: 223 KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLE 282
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVD 186
+F +M+ VE + T +SVL AC + G + GR F C + EV ++D
Sbjct: 283 IFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC---FSEEVVFSNTLLD 339
Query: 187 LLSKAGLLEDALELI 201
+ SK G L A E+
Sbjct: 340 MYSKCGNLNGATEVF 354
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
+VL CA +L+ G+ +H ++ G +D +G+ LV MY CG L + +F K+
Sbjct: 99 SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-R 164
+F WN ++ A G E++++F +M V N TF VL G V+E +R
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 218
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ G+ V ++ K G +E A L +P+ V W +++ GC
Sbjct: 219 GYVLKLGFGSNTAV--VNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGC 271
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 208/333 (62%), Gaps = 7/333 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI SW ++++ + Q L + M +GI PD VT+ TVL AC+HL AL G
Sbjct: 298 MREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHG 357
Query: 61 REIHLYVMQIGF-----DID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
REIH Y++ G DID V + +A++DMYAKCGS+ + LVF ++ K++ WN +I
Sbjct: 358 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMI 417
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G +HG+ +EAL MF RM ++P+ VTF+ VLSAC+HAG V +GR + M Y +
Sbjct: 418 MGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDV 477
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +EHY C++D+L +AG L++A EL + + N V+W ALL C+LH++ +A +A
Sbjct: 478 APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 537
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+ LEP + G L+ N+Y V R+ EV ++R M++ + ++ PG SWIE++ V+ F
Sbjct: 538 RVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNV-RKTPGCSWIELKNGVHVF 596
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
++D++HP + IY+ L+ L +L+ YVP++
Sbjct: 597 VSADRAHPEAHSIYAGLNSLTARLREHGYVPDV 629
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 153/342 (44%), Gaps = 47/342 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++ W M+ Y+Q QF L+ F M + + P + T+ VLS A +G L+ G
Sbjct: 197 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH + M++G+D V + ++L+DMY KC ++ +L +F +REK++F WNSI+
Sbjct: 257 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQC 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L + DRM+ ++P+ VT +VL AC+H + GR GY I +
Sbjct: 317 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGRE-----IHGYMIVSGLGK 371
Query: 181 YG----------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
G ++D+ +K G + DA L+ + W ++ G +H
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMH------- 423
Query: 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
GY L M+ SR EV + +G+ C + ++ R
Sbjct: 424 --------------GYGNEALEMF---SRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 466
Query: 291 V-------YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
Y A + + + ++ +LDE +LA +P
Sbjct: 467 FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 508
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 6/198 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ ++ +I+ + N E + + +M+N G+ PD+ T + AC L L++ ++IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEI-KKIH 159
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + G ++DV+IGSALV+ Y K G ++ + + F +L +++ WN+++ G A G
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGC 183
L F RM E+V P+ T VLS G + GR +M GY V +
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSN--S 277
Query: 184 MVDLLSKAGLLEDALELI 201
++D+ K +EDALE+
Sbjct: 278 LIDMYGKCKCIEDALEIF 295
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKN 106
L A AH L G+EIH Y++ GF ++L++MY+KC ++ +L +F E N
Sbjct: 44 LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEIN 103
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
+F +N+II G +GF E + +M E V P+ TF + AC + ++
Sbjct: 104 VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI----KKIH 159
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + +V +V+ K GL+E A + + V+W A++ G
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNG 211
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 205/329 (62%), Gaps = 3/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
+D+ISW T+IT Y+QN EA++ + M+ I P+Q T ++L A AH+GAL G
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMR 541
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ +DV++ + L+D+Y KCG L ++ +F+++ +++ WN+II +HG
Sbjct: 542 IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGH 601
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A + L +F M+ E V+P+ VTF+S+LSAC+H+G VEEG+ F M Y I P ++HYG
Sbjct: 602 AEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYG 660
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG LE A I+ QP+A IWGALLG C++H N+E+ A + L ++
Sbjct: 661 CMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSK 720
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N GY LL N+YA V +W V K+R +E G+ K+ PG S IE+ RKV F ++SHP
Sbjct: 721 NVGYYVLLSNIYANVGKWEGVDKVRSLARERGL-KKTPGWSTIEVNRKVDVFYTGNQSHP 779
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
EIY L L ++K Y+P+ +L
Sbjct: 780 KCKEIYEELRVLTAKMKSLGYIPDYSFVL 808
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 149/281 (53%), Gaps = 17/281 (6%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW ++I Y QN A F +M+ +G PD +T+ ++ S A R +H
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVH 440
Query: 65 LYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
++M+ G+ + DV IG+A+VDMYAK G LD + VF + K++ WN++I G A +G A
Sbjct: 441 GFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLA 500
Query: 124 HEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EA+ ++ +M+ E E PN T++S+L A H G +++G R ++ +V
Sbjct: 501 SEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQG-MRIHGRVIKTNLHLDVFVA 558
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--L 239
C++D+ K G L DA+ L Q ++V W A++ +H + E E++ +
Sbjct: 559 TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGV 617
Query: 240 EPNNSGYCTLLL----NMYAEVSRWAEVTKIRVAMKELGIE 276
+P++ + +LL + + E +W R+ M+E GI+
Sbjct: 618 KPDHVTFVSLLSACSHSGFVEEGKWC----FRL-MQEYGIK 653
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 6/231 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
+P +D+ +W +MI+ Y N F EA+ F ++ S I PD T VL AC G L
Sbjct: 177 IPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH + ++GF +V++ ++L+ MY++ G + +F + +++ WN++I GL
Sbjct: 234 GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQ 293
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A +AL + D M E ++ N VT +S+L C G + L + + + ++
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI-KHGLEFDLF 352
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
++++ +K G LEDA + + F + V W +++ + + + AH
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQ-QMFITDVVSWNSIIAAYEQNDDPVTAH 402
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ QN +ALD +EM+ GI + VT+ ++L C LG +
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTA 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IHLYV++ G + D+++ +AL++MYAK G+L+ + F ++ ++ WNSII +
Sbjct: 336 MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A F +M +P+ +T +S+ S + + R M G+ + +V
Sbjct: 396 DDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW-LMEDVV 454
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K GLL+ A ++ + + + W L+ G
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIILVK-DVISWNTLITG 493
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++W +I+C+ + + L F EM + G+ PD VT ++LSAC+H G ++ G
Sbjct: 581 VPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG 640
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
+ + + G + +VD+ + G L+ + + + + W +++ +
Sbjct: 641 KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRI 700
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
HG DR+ V+ V + +LS
Sbjct: 701 HGNIELGKFASDRLF--EVDSKNVGYYVLLS 729
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H ++ G ++I + LV++YA G + S F ++ +K+++ WNS+I +G
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197
Query: 123 AHEALAMFDR-MIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
HEA+ F + ++ + P+ TF VL AC G + +GRR
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRR 236
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 205/326 (62%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +DIISW T+I YS+N EAL FN + SPD+ T+A VL ACA L A D
Sbjct: 458 MRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDK 517
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GREIH Y+M+ G+ D ++ ++LVDMYAKCG+L + L+F + K+L W +I G +
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGM 577
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HGF EA+A+F++M +EP+ ++F+S+L AC+H+GLV+EG R F M I P VE
Sbjct: 578 HGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L++ G L A I + P+A IWGALL GC++H ++++A ++ L
Sbjct: 638 HYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFEL 697
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N+GY L+ N+YAE +W EV ++R + + G+ K PG SWIE++ +V F A D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKN-PGCSWIEIKGRVNIFVAGDS 756
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
S+P +++I + L + ++ Y P
Sbjct: 757 SNPETEKIEAFLRGVRARMIEEGYSP 782
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 137/254 (53%), Gaps = 7/254 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++S+T+MI Y++ EA+ F EM+ GISPD T+ VL+ CA LD G
Sbjct: 357 MSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ + D+++ +AL+DMYAKCGS+ + LVF ++R K++ WN++I G + +
Sbjct: 417 KRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKN 476
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+A+EAL++F+ ++ E P+ T VL AC ++GR M GY V
Sbjct: 477 CYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 536
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ +VD+ +K G L A L+ + V W ++ G +H + A N++
Sbjct: 537 AN--SLVDMYAKCGALLLA-RLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593
Query: 239 --LEPNNSGYCTLL 250
+EP+ + +LL
Sbjct: 594 AGIEPDEISFVSLL 607
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N + L F +M SGI D T+ +V + CA + LG
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + ++ F + + L+DMY+KCG LD + +VF ++ +++ + S+I G A
Sbjct: 316 RAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYARE 375
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITPE 177
G A EA+ +F+ M E + P+ T +VL+ C L++EG+R G+ I
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVS 435
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G + +A EL+ S + + W ++GG
Sbjct: 436 ----NALMDMYAKCGSMREA-ELVFSEMRVKDIISWNTVIGG 472
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 103/196 (52%), Gaps = 5/196 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ +++ F ++ F +M +SG+ D T + V + + L +++ G ++H Y++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYIL 222
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +G++LV Y K +D + VF ++ E+++ WNSII G +G A + L+
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVD 186
+F +M++ +E + T +SV + C + L+ GR F C + E ++D
Sbjct: 283 VFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKAC---FSREDRFCNTLLD 339
Query: 187 LLSKAGLLEDALELIR 202
+ SK G L+ A + R
Sbjct: 340 MYSKCGDLDSAKVVFR 355
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R + T + + ++ + A+ + I P T+ +VL CA +L G+E+
Sbjct: 59 RSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGF 122
++ GF +D +GS L MY CG L + VF +++ EK LF WN ++ LA G
Sbjct: 117 DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALF-WNILMNELAKSGD 175
Query: 123 AHEALAMFDRMIYENVEPNGVTFISV 148
++ +F +M+ VE + TF V
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCV 201
>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 208/322 (64%), Gaps = 1/322 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ WT ++T Y N + +AL F EM G+ P+Q + + L++C L ALD GREIH
Sbjct: 252 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 311
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++G + DV++G++L+ MY +CG+L+ +++F ++ +KN+ WNS+I G A HG
Sbjct: 312 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 371
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
ALA F++M+ VEP+ +TF +LSAC+H+G+ ++GR F + S +++HY CM
Sbjct: 372 WALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACM 431
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+L ++G LE+A ELIR+ + N+++W LL C +H LE+A A ++ LEP+ S
Sbjct: 432 VDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCS 491
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
LL N+YA SRW++V++IR MK+ GI K+ PG SWI ++ +F + D+SHP+S
Sbjct: 492 SAYVLLSNLYASASRWSDVSRIRREMKQRGITKQ-PGRSWITIKGWRNEFLSGDRSHPSS 550
Query: 305 DEIYSSLSKLDEQLKLASYVPE 326
D IY L L +LK YVP+
Sbjct: 551 DRIYQKLEWLGGKLKELGYVPD 572
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 6/254 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI--SPDQVTMATVLSACAHLGALD 58
MP R++ISWT+MI Q+ + EAL F +M G+ P T V++ACA+ AL
Sbjct: 145 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 204
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G +IH +V ++G+ D YI +AL+ YA C ++ SL VF N+ W +++ G
Sbjct: 205 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 264
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++ +AL +F M+ E V PN +F S L++C ++ G R + + +V
Sbjct: 265 LNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG-REIHTAAVKLGLETDV 323
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM- 237
++ + + G L D + + + + N V W +++ GC H A N+++
Sbjct: 324 FVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVR 382
Query: 238 -ILEPNNSGYCTLL 250
++EP+ + LL
Sbjct: 383 SMVEPDEITFTGLL 396
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 19/282 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW +MI A F+EM + V+ T+++ G +++
Sbjct: 52 MPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFGKIEVA 107
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y M D+ ++++ Y G ++ L +F ++ +N+ W S+I GL H
Sbjct: 108 EGL-FYKMPFR---DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQH 163
Query: 121 GFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPE 177
G + EAL +F +M+ VE P T+ V++AC +A + +G + + GYS
Sbjct: 164 GRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAY 223
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ ++ + +ED+L + K N VIW AL+ G L+ E A E+M
Sbjct: 224 IS--AALITFYANCKQMEDSLRVFH-GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMM 280
Query: 238 I--LEPNNSGYCTLLLNMYA-EVSRWAEVTKIRVAMKELGIE 276
+ PN S + + L + E W +I A +LG+E
Sbjct: 281 REGVLPNQSSFTSALNSCCGLEALDWGR--EIHTAAVKLGLE 320
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DVY+ + ++ YA+ D +L +F+++ K++ WNS+I+G F L M ++
Sbjct: 25 DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGC----FDCADLTMARKLF 80
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
E E + V++ ++++ G +E F M ++ + M+ G +
Sbjct: 81 DEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMP-----FRDIAAWNSMIYGYCCNGRV 135
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM----ILEPNNSGYCTLL 250
ED L L + + N + W +++GG H E A ++M ++P +S YC ++
Sbjct: 136 EDGLRLFQEMPCR-NVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 194
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++I+SW ++I +Q+ AL FN+M S + PD++T +LSAC+H G G
Sbjct: 349 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 408
Query: 61 REIHLYVMQ---IGFDIDVYIGSALVDMYAKCGSLDRS 95
R + Y + +D Y + +VD+ + G L+ +
Sbjct: 409 RCLFKYFSENKSAEVKLDHY--ACMVDILGRSGKLEEA 444
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ISW MI Y N EA+ F +M+ G+ PD VT+A++L AC L AL LG
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ + ++ + +AL+DMYAKCG L+ + VF K+R +++ W S++
Sbjct: 326 RRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRS 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++A+A+F +M+ P+ + F+SVLSAC+H GL+++GR F MT Y I P +EH
Sbjct: 386 GQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ CMVDL +AG +E+A I+ +PN +WGALL C++H ++I +A + L L
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLA 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SGY LL N+YA+ W +V +R AMK++GI K+ PG S +E+ +V+ F A D+
Sbjct: 506 PKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI-KKVPGISNVELNGQVHTFLAGDQY 564
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY L L ++K Y+P+ E+ L
Sbjct: 565 HPQAKNIYGELDVLVGKMKELGYIPQTESAL 595
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 127/268 (47%), Gaps = 29/268 (10%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ + MI Y N + EAL F M + +PD T VL AC+ L L +G ++
Sbjct: 100 KNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQV 159
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++G D +++IG+ALV MY KCG L + V ++ +++ WNS++ G A G
Sbjct: 160 HDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQF 219
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEVEHY 181
+AL + M N+ + T S+ + L V+ F MT I+ +
Sbjct: 220 DDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLIS-----W 274
Query: 182 GCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRNLEI 228
M+ + + +A+ L + +P+AV +LL C +LH+ +E
Sbjct: 275 NVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEK 334
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAE 256
++ N ++LE LL+MYA+
Sbjct: 335 GNLRPN--LLLE-------NALLDMYAK 353
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
ID + L+ Y+ G + +F + EKN+ +N +I + EAL++F M
Sbjct: 69 IDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVM 128
Query: 134 IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
+ P+ TF VL AC+ + G + ++ + + +V + K G
Sbjct: 129 LSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIV-KVGLDTNLFIGNALVAMYGKCGC 187
Query: 194 LEDALELIRSSKFQPNAVIWGALLGG 219
L +A +++ ++ + V W +++ G
Sbjct: 188 LREARKVLDQMPYR-DVVSWNSMVAG 212
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 207/324 (63%), Gaps = 2/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGRE 62
+D++SW+ M+TCY+Q A + F +M G+ P++ T+++V+ ACA A +DLGR+
Sbjct: 468 KDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQ 527
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ + + SALV MYA+ GS++ + +F + +++L WNS++ G A HG+
Sbjct: 528 FHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGY 587
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ +AL +F +M E +E +GVTF+SV+ C HAGLVEEG+R F SM Y ITP +EHY
Sbjct: 588 SQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYA 647
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL S+AG L++A+ LI F ++W LLG CK+H+N+E+ +A +L+ LEP
Sbjct: 648 CMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPF 707
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+Y+ +W E ++R M ++K G SWI+++ KV+ F ASDKSHP
Sbjct: 708 DSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKE-AGCSWIQIKNKVHSFIASDKSHP 766
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S++IY+ L + +LK Y P+
Sbjct: 767 LSEQIYAKLRAMTTKLKQEGYCPD 790
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 11/256 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT+++T Y Q+ + ++ F M+ G+ P+ VT A+VLS A G +DLG
Sbjct: 165 MPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG 224
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ G V++ ++L++MYAKCG ++ + +VF + +++ WN+++ GL ++
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLN 284
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F T+ +V+ C A + + G R L + +
Sbjct: 285 GHDLEALQLFHDSRSSITMLTQSTYATVIKLC--ANIKQLGLARQLHSSV---LKRGFHS 339
Query: 181 YG----CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
YG ++D SKAG L +AL++ N V W A++ GC + ++ +A + +
Sbjct: 340 YGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399
Query: 237 M--ILEPNNSGYCTLL 250
+ PN+ Y T+L
Sbjct: 400 REDGVAPNDFTYSTIL 415
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 18/266 (6%)
Query: 16 YSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI 74
+++ +ALD F ++ + G + VL C + LG+++H ++ G D
Sbjct: 77 HARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDR 136
Query: 75 -DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
DV +G++LVDMY K S+ VF + ++N+ W S++ G G + + +F RM
Sbjct: 137 GDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRM 196
Query: 134 IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
E V PN VTF SVLS G+V+ G RR + + + V ++++ +K GL
Sbjct: 197 RAEGVWPNSVTFASVLSVVASQGMVDLG-RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL 255
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVNELMILEPNNSGYCTLLLN 252
+E+A ++ + V W L+ G L+ +LE L + + S L +
Sbjct: 256 VEEA-RVVFCGMETRDMVSWNTLMAGLVLNGHDLE-------ALQLFHDSRSSITMLTQS 307
Query: 253 MYAEVSRWAEVTKIRVAMKELGIEKR 278
Y A V K+ +K+LG+ ++
Sbjct: 308 TY------ATVIKLCANIKQLGLARQ 327
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 5/221 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+++++SWT MI QN A F+ M+ G++P+ T +T+L+A L +
Sbjct: 370 SQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA----SVASLPPQ 425
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ ++ +G+AL+ Y+K + + +L +F + +K++ W++++ A G
Sbjct: 426 IHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGD 485
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ A +F +M ++PN T SV+ AC + R+F +++ + +
Sbjct: 486 SDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSS 545
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + ++ G +E A + I + + V W ++L G H
Sbjct: 546 ALVSMYARKGSIESA-QCIFERQTDRDLVSWNSMLSGYAQH 585
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 208/327 (63%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P D+ISW T+I+ Y+QN EA++ +N M+ G I+ +Q T +VL AC+ GAL
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G ++H +++ G +DV++ ++L DMY KCG L+ +L +F+++ N WN++I
Sbjct: 470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGF 529
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+ +F M+ E V+P+ +TF+++LSAC+H+GLV+EG+ F M Y ITP ++
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+ +AG LE AL+ I+S QP+A IWGALL C++H N+++ IA L +
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP + GY LL NMYA +W V +IR G+ K PG S +E++ KV F ++
Sbjct: 650 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK-TPGWSSMEVDNKVEVFYTGNQ 708
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP +E+Y L+ L +LK+ YVP+
Sbjct: 709 THPMYEEMYRELTALQAKLKMIGYVPD 735
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 139/257 (54%), Gaps = 12/257 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N+Q A+ F EM+ S I PD +T+ ++ S + LG +
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 367
Query: 61 REIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + + ++ G+ + D+ IG+A+V MYAK G +D + VF L ++ WN+II G A
Sbjct: 368 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQ 427
Query: 120 HGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSIT 175
+GFA EA+ M++ M E + N T++SVL AC+ AG + +G + R L +
Sbjct: 428 NGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN----GLY 483
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+V + D+ K G LEDAL L + N+V W L+ H + E A + E
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 236 LMI--LEPNNSGYCTLL 250
++ ++P++ + TLL
Sbjct: 543 MLDEGVKPDHITFVTLL 559
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ Y Q+ +EAL N ++ + D VT+ ++LSAC G + G
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y ++ G + ++++ + L+D+YA+ G L VF ++ ++L WNSII+ ++
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A+++F M ++P+ +T IS+ S + G + R + ++ G+ + ++
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL-EDIT 385
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNA--VIWGALLGG 219
+V + +K GL++ A + + PN + W ++ G
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVF---NWLPNTDVISWNTIISG 424
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 137/267 (51%), Gaps = 16/267 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFN-EMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+ +W MI+ Y + E + F+ M +SG++PD T +VL AC + +D G +
Sbjct: 115 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV--ID-GNK 171
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++ GF DVY+ ++L+ +Y++ ++ + ++F ++ +++ WN++I G G
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A EAL + + + + VT +S+LSACT AG G S + + + E+
Sbjct: 232 AKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRG-VTIHSYSIKHGLESELFVSN 286
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
++DL ++ G L D ++ + + + W +++ +L+ A E+ + ++
Sbjct: 287 KLIDLYAEFGRLRDCQKVF-DRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ 345
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIR 267
P+ C L+++ + +S+ ++ R
Sbjct: 346 PD----CLTLISLASILSQLGDIRACR 368
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 208/334 (62%), Gaps = 4/334 (1%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW +M+ ++ N + E L F EM +PD T+ +VL+ACA GAL
Sbjct: 865 MPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALA 924
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
LGR +H+YV ++G + ++ +AL+D+YAKCGS++ + +F ++ + + W S+I GL
Sbjct: 925 LGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGL 984
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A +GF EAL +F M E + P +T + VL AC+H GLV++G R F M Y I+P
Sbjct: 985 AANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPR 1044
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EH GCMVDLL +AG +E+A + I + +PNAV+W LLG C +H+ LE+ +A L+
Sbjct: 1045 IEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 1104
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+P +SG LL N+YA V WA+V +R M + + K PG S +E+ VY+F
Sbjct: 1105 ELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKN-PGHSLVELRNSVYEFVMG 1163
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+SHP S++IY L+++ E+L+ Y+P +L
Sbjct: 1164 DRSHPESEQIYEMLAEIAERLRREGYIPRTSNVL 1197
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
PD T ++ ACA L AL G +H + GF V++ ++LV +Y CG + + V
Sbjct: 802 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 861
Query: 99 F--FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
F +R +NL WNS++ A +G +E L +F M+ + P+G T +SVL+AC G
Sbjct: 862 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 921
Query: 157 LVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ GRR + + G V + ++DL +K G + DA + V W +
Sbjct: 922 ALALGRRVHVYVEKVGLVENSHVSN--ALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTS 979
Query: 216 LLGG 219
L+ G
Sbjct: 980 LIVG 983
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 208/322 (64%), Gaps = 1/322 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ WT ++T Y N + +AL F EM G+ P+Q + + L++C L ALD GREIH
Sbjct: 268 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 327
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++G + DV++G++L+ MY +CG+L+ +++F ++ +KN+ WNS+I G A HG
Sbjct: 328 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 387
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
ALA F++M+ VEP+ +TF +LSAC+H+G+ ++GR F + S +++HY CM
Sbjct: 388 WALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACM 447
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+L ++G LE+A ELIR+ + N+++W LL C +H LE+A A ++ LEP+ S
Sbjct: 448 VDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCS 507
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
LL N+YA SRW++V++IR MK+ GI K+ PG SWI ++ +F + D+SHP+S
Sbjct: 508 SAYVLLSNLYASASRWSDVSRIRREMKQRGITKQ-PGRSWITIKGWRNEFLSGDRSHPSS 566
Query: 305 DEIYSSLSKLDEQLKLASYVPE 326
D IY L L +LK YVP+
Sbjct: 567 DRIYQKLEWLGGKLKELGYVPD 588
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 6/254 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI--SPDQVTMATVLSACAHLGALD 58
MP R++ISWT+MI Q+ + EAL F +M G+ P T V++ACA+ AL
Sbjct: 161 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 220
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G +IH +V ++G+ D YI +AL+ YA C ++ SL VF N+ W +++ G
Sbjct: 221 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 280
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++ +AL +F M+ E V PN +F S L++C ++ G R + + +V
Sbjct: 281 LNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWG-REIHTAAVKLGLETDV 339
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM- 237
++ + + G L D + + + + N V W +++ GC H A N+++
Sbjct: 340 FVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVR 398
Query: 238 -ILEPNNSGYCTLL 250
++EP+ + LL
Sbjct: 399 SMVEPDEITFTGLL 412
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 19/282 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW +MI A F+EM + V+ T+++ G +++
Sbjct: 68 MPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFGKIEVA 123
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y M D+ ++++ Y G ++ L +F ++ +N+ W S+I GL H
Sbjct: 124 EGL-FYKMPFR---DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQH 179
Query: 121 GFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPE 177
G + EAL +F +M+ VE P T+ V++AC +A + +G + + GYS
Sbjct: 180 GRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAY 239
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ ++ + +ED+L + K N VIW AL+ G L+ E A E+M
Sbjct: 240 IS--AALITFYANCKQMEDSLRVFH-GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMM 296
Query: 238 I--LEPNNSGYCTLLLNMYA-EVSRWAEVTKIRVAMKELGIE 276
+ PN S + + L + E W +I A +LG+E
Sbjct: 297 REGVLPNQSSFTSALNSCCGLEALDWGR--EIHTAAVKLGLE 336
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DVY+ + ++ YA+ D +L +F+++ K++ WNS+I+G F L M ++
Sbjct: 41 DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGC----FDCADLTMARKLF 96
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
E E + V++ ++++ G +E F M ++ + M+ G +
Sbjct: 97 DEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMP-----FRDIAAWNSMIYGYCCNGRV 151
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI----LEPNNSGYCTLL 250
ED L L + + N + W +++GG H E A ++M ++P +S YC ++
Sbjct: 152 EDGLRLFQEMPCR-NVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 210
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++I+SW ++I +Q+ AL FN+M S + PD++T +LSAC+H G G
Sbjct: 365 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 424
Query: 61 REIHLYVMQ---IGFDIDVYIGSALVDMYAKCGSLDRS 95
R + Y + +D Y + +VD+ + G L+ +
Sbjct: 425 RCLFKYFSENKSAEVKLDHY--ACMVDILGRSGKLEEA 460
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 203/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SWTT+I+ Y+ +Q EA+ AF M P+ + +L C LGA +G
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIG 570
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++G D ++ + +AL+ MY KCG D S +F + E+++F WN+II G A H
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQH 629
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ M+ M V PN VTF+ +L+AC+HAGLV+EG + F SM+ Y +TP EH
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G ++ A + I +P+ VIW ALLG CK+H+N EI A +L +E
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIE 749
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G +L N+Y+ + W EV ++R MK+ G+ K PG SW +++ K++ F DK
Sbjct: 750 PSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE-PGCSWTQIKDKMHSFVTGDKQ 808
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +EI ++L +L LK YVP+ E +L
Sbjct: 809 HEQIEEIVATLEELYTLLKATGYVPDTEFVL 839
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW MI Y+QN + EAL E+ SG+ P ++ ++ AC+++ AL+ G
Sbjct: 379 MPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG 438
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++G + + +AL+ MY KC +++ + VF ++ K++ WNS + L +
Sbjct: 439 TQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN 498
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
EA FD M+ + V++ +++SA HA E F +M C + +
Sbjct: 499 DLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 118/220 (53%), Gaps = 11/220 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ Y + + +A D F +M G+ PDQ A+ LSA LG LD+
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVL 243
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS-LDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ + ++ GF+ DV IG+A++++Y++ S LD ++ F + E+N + W+++I L+
Sbjct: 244 ESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSH 303
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+A+++R +++ I+ L+ C G +++ R F + P V
Sbjct: 304 GGRIDAAIAVYERDPVKSIACR-TALITGLAQC---GRIDDARILFEQIP-----EPIVV 354
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ + G++ +A EL F+ N + W ++ G
Sbjct: 355 SWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAG 393
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDII+W +MI+ Y N A D ++ + + T A +LS LG +
Sbjct: 60 MPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAILLSGYGRLGRVLEA 115
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + +++ + +A++ Y + G + + +F + +++ WNS++ G
Sbjct: 116 RRVFDGMLE----RNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHS 171
Query: 121 GFAHEALAMFDRMIYENV 138
+A +F++M N+
Sbjct: 172 LQMVDARNLFEKMPERNL 189
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +W+TMI S + A+ + I+ +++ A G +D
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIA----CRTALITGLAQCGRIDDA 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + QI I V +AL+ Y + G ++ + +F K+ +N W +I G A +
Sbjct: 342 R---ILFEQIPEPI-VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQN 397
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------RFLSMTC 170
G + EAL + + + P+ + S+ AC++ +E G + +F S C
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFAC 457
Query: 171 GYSIT 175
IT
Sbjct: 458 NALIT 462
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 203/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD +SWTT+I+ Y+ +Q EA+ AF M P+ + +L C LGA +G
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIG 570
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++G D ++ + +AL+ MY KCG D S +F + E+++F WN+II G A H
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQH 629
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ M+ M V PN VTF+ +L+AC+HAGLV+EG + F SM+ Y +TP EH
Sbjct: 630 GLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEH 689
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G ++ A + I +P+ VIW ALLG CK+H+N EI A +L +E
Sbjct: 690 YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIE 749
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G +L N+Y+ + W EV ++R MK+ G+ K PG SW +++ K++ F DK
Sbjct: 750 PSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE-PGCSWTQIKDKMHSFVTGDKQ 808
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +EI ++L +L LK YVP+ E +L
Sbjct: 809 HEQIEEIVATLEELYTLLKATGYVPDTEFVL 839
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW MI Y+QN + EAL E+ SG+ P ++ ++ AC+++ AL+ G
Sbjct: 379 MPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG 438
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H +++G + + +AL+ MY KC +++ + VF ++ K++ WNS + L +
Sbjct: 439 TQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN 498
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
EA FD M+ + V++ +++SA HA E F +M C + +
Sbjct: 499 DLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 118/220 (53%), Gaps = 11/220 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ Y + + +A D F +M G+ PDQ A+ LSA LG LD+
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVL 243
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS-LDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ + ++ GF+ DV IG+A++++Y++ S LD ++ F + E+N + W+++I L+
Sbjct: 244 ESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSH 303
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+A+++R +++ I+ L+ C G +++ R F + P V
Sbjct: 304 GGRIDAAIAVYERDPVKSIACR-TALITGLAQC---GRIDDARILFEQIP-----EPIVV 354
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ + G++ +A EL F+ N + W ++ G
Sbjct: 355 SWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAG 393
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDII+W +MI+ Y N A D ++ + + T A +LS LG +
Sbjct: 60 MPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAILLSGYGRLGRVLEA 115
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + +++ + +A++ Y + G + + +F + +++ WNS++ G
Sbjct: 116 RRVFDGMLE----RNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHS 171
Query: 121 GFAHEALAMFDRMIYENV 138
+A +F++M N+
Sbjct: 172 LQMVDARNLFEKMPERNL 189
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +W+TMI S + A+ + I+ +++ A G +D
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIA----CRTALITGLAQCGRIDDA 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + QI I V +AL+ Y + G ++ + +F K+ +N W +I G A +
Sbjct: 342 R---ILFEQIPEPI-VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQN 397
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR----------RFLSMTC 170
G + EAL + + + P+ + S+ AC++ +E G + +F S C
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFAC 457
Query: 171 GYSIT 175
IT
Sbjct: 458 NALIT 462
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 217/342 (63%), Gaps = 21/342 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M R+++SWT M++ Y+QN + A++ F EM + +G+ P+++T+++VL ACA +GA++L
Sbjct: 181 MTERNVVSWTAMVSGYAQNGRHEAAVETFLEMWEGAGVQPNELTVSSVLPACAAVGAMEL 240
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC-WNSIIEGLA 118
G ++ Y G +V++ +AL++MYAKCGS+ R+ VF + + C WN++I A
Sbjct: 241 GTKVEEYARGKGHLGNVFVTNALLEMYAKCGSIQRAWQVFQGIGHRRDLCSWNTMIMAFA 300
Query: 119 VHGFAHEALAMFDRM----------IY--------ENVEPNGVTFISVLSACTHAGLVEE 160
VHG EALA+F ++ +Y V+P+G+TF+ V+ ACTH GLV+E
Sbjct: 301 VHGLWMEALALFHKLRVRISCSNSLVYFFSIPTHMTGVKPDGITFVGVILACTHGGLVDE 360
Query: 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
G+ F SM +SI P +EHYGCMVDLL +AGLL++A +I S +P+AVIWGALLG C
Sbjct: 361 GKLIFNSMEADFSINPRIEHYGCMVDLLGRAGLLKEAYSMIISMPAEPDAVIWGALLGAC 420
Query: 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCP 280
H N+E+A AV++LM LEP N+ +L N+YA +W V ++ +KE K+
Sbjct: 421 SFHGNIELAETAVDKLMYLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD-HKKSA 479
Query: 281 GSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLAS 322
G S+IE++ ++++F D SHP +EIY +L + +KL +
Sbjct: 480 GYSFIELDGRMHKFLVEDMSHPIFEEIYKTLDSVTMIMKLVN 521
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D + +AL+ YA+CG +D + +F ++ E+N+ W +++ G A +G A+ F M
Sbjct: 154 DTAVYNALLSAYARCGLVDAAEKLFGEMTERNVVSWTAMVSGYAQNGRHEAAVETFLEM- 212
Query: 135 YE--NVEPNGVTFISVLSACTHAGLVEEGRR 163
+E V+PN +T SVL AC G +E G +
Sbjct: 213 WEGAGVQPNELTVSSVLPACAAVGAMELGTK 243
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 207/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARD-IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP ++ ISWTTMI+ Y Q +EAL F+EM+NS + PD V++A+ LSAC+ LGAL+
Sbjct: 202 MPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQ 261
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH Y + ID + L+DMYAKCG ++ +L VF ++ K++ W ++I G A
Sbjct: 262 GKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAY 321
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA++ F M V+PN +TF +VL+AC++ GLVEEG+ F ++ Y++ P +E
Sbjct: 322 HGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIE 381
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL +A I+ +PNAVIWG+LL C++H+N+E+ L+ +
Sbjct: 382 HYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEM 441
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N+ G + N++A +W + + R M+E G+ K PG S I +E ++F A D+
Sbjct: 442 DSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVK-VPGCSAISLEGTTHEFLAGDR 500
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SH EI + + +L+ YVPELE ML
Sbjct: 501 SHAEIQEIRTKWRFVRRKLEENGYVPELEDML 532
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 54/261 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D W MI S + Q +L ++ M + T +L AC++L A +IH
Sbjct: 74 DTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIH 133
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA------ 118
++ + G+ D+Y ++L++ YA G+ + L+F +++E + WNS+I+G
Sbjct: 134 AHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMD 193
Query: 119 ---------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSAC 152
+ G+ EAL +F M NV P+ V+ S LSAC
Sbjct: 194 MALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSAC 253
Query: 153 THAGLVEEG----------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
+ G +E+G R R S+ C ++D+ +K G +E+AL + +
Sbjct: 254 SQLGALEQGKWIHSYANKTRTRIDSVLC-----------CVLIDMYAKCGEMEEALGVFK 302
Query: 203 SSKFQPNAVIWGALLGGCKLH 223
+ K + + +W AL+ G H
Sbjct: 303 NMKTK-SVQVWTALISGYAYH 322
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 31/190 (16%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKNLFCWNSIIEGLAV 119
++IH +++ G D Y + + + VFF + F WN +I GL+
Sbjct: 28 KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFL-- 166
+L ++ RM+ + N TF +L AC+ HA + + G +
Sbjct: 88 SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYA 147
Query: 167 --SMTCGYSITPEVEHYGCMVDLLS---------------KAGLLEDALELIRSSKFQPN 209
S+ Y++T +H + D + KAG ++ AL L R + N
Sbjct: 148 VNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNN 207
Query: 210 AVIWGALLGG 219
A+ W ++ G
Sbjct: 208 AISWTTMISG 217
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 198/326 (60%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WTTM+ Y + KQ +L F M SGI P+QVT L AC+ L L G
Sbjct: 284 MPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEG 343
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + F +D ++GSAL+++YAKCG + + +F REK+L WN II A H
Sbjct: 344 KQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHH 403
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ ++++M PN VT++ +LSAC+H+GLV+EG + F SM SI EH
Sbjct: 404 GVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEH 463
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
Y C++DL S+AG L+DA LI K +P + +W ALLGGC H N I ++A L+
Sbjct: 464 YTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQA 523
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+N+G TLL N+YA +W E +IR M G++K+ PG SWIE+ KV+ F A DK
Sbjct: 524 EPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQ-PGCSWIEVANKVHVFVARDK 582
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
SH SD IY L + +++ VP
Sbjct: 583 SHSESDLIYGLLQNIHYMMRIVGTVP 608
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 52/230 (22%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SWT +++ Y++ R+A F+ S + VT +LS
Sbjct: 67 PERDVVSWTALVSAYARRGMLRDARSLFDR---SDARRNVVTWTALLSG----------- 112
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
YA+ G +D + ++F ++ ++N+ WN+++E AV G
Sbjct: 113 ------------------------YARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAG 148
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VE 179
A +A A+FDRM + + +L+ +G V++ R F M PE V
Sbjct: 149 RAGDACALFDRMPVRDAGSWNI----LLAMLVRSGSVDKARELFGRM-------PERDVM 197
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ MVD ++++G +++A L+ S + N V W A++ G + L+ A
Sbjct: 198 AWTTMVDGVARSGNVDEA-RLLFDSMPERNVVSWNAMISGYTRNHRLDEA 246
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 133/334 (39%), Gaps = 78/334 (23%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW MI+ Y++N + EALD F +M + I+ +C
Sbjct: 222 MPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIA-----------SC--------- 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+M GF + L R+ +F ++ E+N+ W +++ G
Sbjct: 262 -----NIMITGF--------------IQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKG 302
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ +L +F M+ + PN VTF+ L AC+ + EG ++ M C + +
Sbjct: 303 KQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEG-KQVHQMICKTAFQVDTFV 361
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++++ +K G + A +L S+ + + + W ++ H + I I + E M
Sbjct: 362 GSALMNVYAKCGEVGLARKLFDLSR-EKDLISWNGIIAAYA-HHGVGIEAIHLYEKMQGN 419
Query: 239 -LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
PN+ Y LL C S ++ K+++ +
Sbjct: 420 GYRPNDVTYVVLL--------------------------SACSHSGLVDEGLKIFESMVN 453
Query: 298 DKSHPASDEIYSSL-------SKLDEQLKLASYV 324
D+S DE Y+ L +LD+ +L Y+
Sbjct: 454 DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYL 487
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 24/225 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW TM+ Y+ + +A F+ M D + +L+ G++D
Sbjct: 129 MPQRNVVSWNTMLEAYAVAGRAGDACALFDRMP----VRDAGSWNILLAMLVRSGSVDKA 184
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+ + + DV + +VD A+ G++D + L+F + E+N+ WN++I G +
Sbjct: 185 RELFGRMPE----RDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRN 240
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--V 178
EAL +F +M + ++ + +++ ++ R+ F M PE V
Sbjct: 241 HRLDEALDLFTKMPHRDIASCNI----MITGFIQNKDLKRARKLFDEM-------PERNV 289
Query: 179 EHYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGC 220
+ M++ K E +L L R S +PN V + L C
Sbjct: 290 VTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDAC 334
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 204/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +RD++SWTT+I+ Y+Q ++ EA++ F M + P+ + +LS C LG+ LG
Sbjct: 510 MLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLG 569
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ G D ++ + +AL+ MY KCG D S VF + E+++F WN+ I G A H
Sbjct: 570 QQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQH 628
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ M++ M V PN VTF+ +L+AC+HAGLV+EG + F SM+ Y +TP +EH
Sbjct: 629 GLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEH 688
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G ++ A + I +P+ VIW ALLG CK+H+N EI A +L E
Sbjct: 689 YACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTE 748
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G +L N+Y+ + W EV ++R MK+ G+ K PG SW+++ KV+ F DK
Sbjct: 749 PSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKE-PGCSWMQIRNKVHSFVTGDKQ 807
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +EI +L L L+ YVP+ E +L
Sbjct: 808 HEKIEEIDYTLQDLYTLLRGTGYVPDTEFVL 838
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 4/168 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW MI Y+QN + EALD + +G+ P ++ + AC+H+GAL+ G
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG 437
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ G + Y+ +AL+ MY KC +++ VF ++R K+ WNS I L +
Sbjct: 438 RQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQN 497
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+A +FD M+ +V V++ +++SA A +E F +M
Sbjct: 498 NMLEDARHIFDNMLSRDV----VSWTTIISAYAQAERGDEAVEFFKTM 541
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 11/220 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT MI+ Y + +Q + D F M + G SPDQ A+VLSA L L +
Sbjct: 183 MPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVL 242
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS-LDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ V++ GF+ DV IG++++++Y + S LD ++ F + E+N + W+++I L+
Sbjct: 243 EVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSH 302
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+A++ R +++ P+ ++ L+ C G + E R F + P V
Sbjct: 303 GGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---GRITEARILFEQIP-----DPIVV 353
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+ + G++++A EL F+ N + W ++ G
Sbjct: 354 SWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWAGMIAG 392
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +W+TMI S + A+ + I P Q + T L+ C +
Sbjct: 285 MVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARCGRI------ 337
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E + QI D V +A++ Y + G +D + +F ++ +N W +I G A +
Sbjct: 338 TEARILFEQIP-DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQN 396
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
G + EAL + + + P+ + S AC+H G +E GR+
Sbjct: 397 GRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQ 439
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATV-LSACAHLGALDL 59
MP RDII+W +MI+ Y + +A F+ IS V AT+ LS A LG +
Sbjct: 59 MPHRDIIAWNSMISAYCNSGMLEDARILFD-----AISGGNVRTATILLSGYARLGRVLD 113
Query: 60 GREIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
R + FD + +A+V Y + G + + +F + +++ WNS++
Sbjct: 114 ARRV--------FDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVT 165
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G +A +F +M N+ VT+ ++S +G F M +
Sbjct: 166 GYCHSRQMVDAWNLFKQMPQRNL----VTWTVMISGYVRIEQHGKGWDIF-RMMHHEGAS 220
Query: 176 PEVEHYGCM---VDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
P+ ++ + V L G+LE L+ + F+ + VI ++L
Sbjct: 221 PDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSIL 265
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 202/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW +I+ +S +Q +A F+ M G++PD T A VL CA+L + LG++I
Sbjct: 548 KTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQI 607
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ DVYI S LVDMY+KCG++ S L+F K ++ WN+++ G A HG
Sbjct: 608 HAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLG 667
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F+ M NV+PN TF+SVL AC H GLV++G F M Y + P+ EHY C
Sbjct: 668 EEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSC 727
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L ++G +++AL L++ F+ +AVIW LL CK+H N+E+A A L+ L+P +
Sbjct: 728 MVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQD 787
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
S C LL N+YA+ W V+++R M+ ++K PG SWIE++ +V+ F DK HP
Sbjct: 788 SSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKE-PGCSWIELKDEVHAFLVGDKGHPR 846
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+EIY L L +++ Y+P+ + +L
Sbjct: 847 DEEIYEKLGVLIGEMQSVGYIPDCDVLL 874
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +I QN E L F M +S + PD T +VL ACA AL+ G
Sbjct: 444 MERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTG 503
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
EIH +++ G D ++G+ALVDMY KCG ++++ + + +K + WN+II G ++
Sbjct: 504 MEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLL 563
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ +A F RM+ V P+ T+ +VL C + V G ++ + + +V
Sbjct: 564 QQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLG-KQIHAQIIKQELQSDVYI 622
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL- 239
+VD+ SK G ++D+ +L+ + V W A+L G H L + + E M L
Sbjct: 623 CSTLVDMYSKCGNMQDS-QLMFEKAPNRDFVTWNAMLCG-YAHHGLGEEALKLFESMQLV 680
Query: 240 --EPNNSGYCTLL 250
+PN++ + ++L
Sbjct: 681 NVKPNHATFVSVL 693
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 116/218 (53%), Gaps = 5/218 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW ++I+ + QN + R+++D F EM G+ D+ ++A VL AC L D+G
Sbjct: 141 MPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMG 200
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V++ GFD DV GSAL+ MYAKC LD SL VF +L EKN W+++I G +
Sbjct: 201 VQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQN 260
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E L +F M V + + S+ +C + G + S + ++
Sbjct: 261 DRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLG-KELHSHALKSAFGSDIIV 319
Query: 181 YGCMVDLLSKAGLLEDALELIRS----SKFQPNAVIWG 214
+D+ +K G + DA +++ S S NA+I G
Sbjct: 320 GTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 24/262 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + S+ +I Y+++ + +AL +F + +G+ D++T++ L+ACA + G
Sbjct: 343 MPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEG 402
Query: 61 REIH-LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R++H L V I ++ + +A++DMY KC +L + +F + ++ WN+II
Sbjct: 403 RQVHGLAVKSISMS-NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQ 461
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G E LA F MI+ +EP+ T+ SVL AC GR+ ++ G I +
Sbjct: 462 NGNEEETLAHFASMIHSRMEPDDFTYGSVLKACA-------GRQ---ALNTGMEIHTRII 511
Query: 180 HYG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
G +VD+ K G++E A + I Q V W A++ G L + E AH
Sbjct: 512 KSGMGFDSFVGAALVDMYCKCGMIEKA-DKIHDRTEQKTMVSWNAIISGFSLLQQSEDAH 570
Query: 231 IAVNEL--MILEPNNSGYCTLL 250
+ + M + P+N Y +L
Sbjct: 571 KFFSRMLEMGVNPDNFTYAAVL 592
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD ++W M+ Y+ + EAL F M+ + P+ T +VL ACAH+G +D G
Sbjct: 647 PNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKG- 705
Query: 62 EIHLY---VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+H + + + G D S +VD+ + G +D +L + K+ E + W +++
Sbjct: 706 -LHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVC 764
Query: 118 AVHG 121
+HG
Sbjct: 765 KIHG 768
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 41/231 (17%)
Query: 33 KNSGISPDQV-TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
+N P ++ T + + C+ +L+ G++ H ++ GF+ ++ + L+ MY KC
Sbjct: 40 QNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLY 99
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
LD + VF K+ +++ +NSII G A G + + + YE E + V++ SV+S
Sbjct: 100 LDYACKVFDKMYLRDVVSYNSIISGYASCG----EMDIARKFFYEMPERDVVSWNSVISG 155
Query: 152 CTHAGLVEEGRRRFLSM-----------------TCG-----------------YSITPE 177
G + FL M CG + +
Sbjct: 156 FLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCD 215
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC-KLHRNLE 227
V ++ + +K L+D+L + S + N V W A++ GC + RN+E
Sbjct: 216 VVTGSALLGMYAKCKRLDDSLSVF-SELPEKNWVSWSAMIAGCVQNDRNVE 265
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 208/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M + + SW+ +I ++ + + E L +M + G ++ T+ VLSAC HLG+ DL
Sbjct: 159 MDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDL 218
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH +++ +++V + ++L+DMY K G L++ L VF + EKN + + +I GLA+
Sbjct: 219 GKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAI 278
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +F MI E + P+ V ++ V SAC+HAGLVEEG + F SM + I P V+
Sbjct: 279 HGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQ 338
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL + G+L++A ELI+S +PN VIW +LL CK+H NLEI IA L +L
Sbjct: 339 HYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFML 398
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NNSG +L NMYA+ +W +V KIR + E + + PG S IE +RKVY+F + DK
Sbjct: 399 NQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQT-PGFSLIEAKRKVYKFVSQDK 457
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
S P + IY + +++ QLK Y+P+ +L
Sbjct: 458 SIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVL 489
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 19/224 (8%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI + + EAL + +M G+ PD+ T VL AC+ LG +D G ++H +V
Sbjct: 66 YNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVF 125
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G + DV + ++L++MY KCG + + VF + EK++ W++II A +E L
Sbjct: 126 KMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLM 185
Query: 129 MFDRMIYEN---VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI------TPEVE 179
+ +M E VE + T ++VLSACTH G + G+ C + I V
Sbjct: 186 LLGKMSSEGRCRVEES--TLVNVLSACTHLGSPDLGK-------CIHGILLRNISELNVV 236
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K+G LE L + ++ + N + ++ G +H
Sbjct: 237 VKTSLIDMYVKSGCLEKGLRVFKNMS-EKNRYSYTVMISGLAIH 279
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 53 HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCW 110
H ++ +++H +V++ G D + S LV A K GS+D + +F ++ E + F +
Sbjct: 7 HNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDY 66
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170
N++I G EAL ++ MI VEP+ T+ VL AC+ G+V+EG +
Sbjct: 67 NTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEG-IQVHGHVF 125
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V ++++ K G +++A ++ + + W A++G
Sbjct: 126 KMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMD-EKSVASWSAIIGA 173
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 209/332 (62%), Gaps = 3/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D++SW T+I+ Y+QN EA++ + M+ I +Q T ++L+A AH+GAL
Sbjct: 436 IPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQ 495
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH ++++ +DV++G+ L+D+Y KCG L ++ +F+++ ++ WN+II +
Sbjct: 496 GMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGI 555
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +AL +F M E V+P+ VTFIS+LSAC+H+GLV+EG + F + Y I P ++
Sbjct: 556 HGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG-KWFFHLMQEYGIKPSLK 614
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE A + I+ P+A IWGALLG C++H N+E+ A + L +
Sbjct: 615 HYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEV 674
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N GY LL N+YA V +W V K+R +E G+ K+ PG S IE+ R+V F ++
Sbjct: 675 DSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGL-KKTPGWSSIEVNRRVDIFYTGNQ 733
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP EIY+ L L ++K Y+P+ +L
Sbjct: 734 SHPKCKEIYAELRILTAKMKSLGYIPDYSFVL 765
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 139/255 (54%), Gaps = 8/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I Y QN A F +M+ +G+ PD +T+ ++ S A
Sbjct: 334 MFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNS 393
Query: 61 REIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R +H ++M+ G+ ++ V IG+A++DMYAK G +D + VF + K++ WN++I G
Sbjct: 394 RSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQ 453
Query: 120 HGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+G A EA+ ++ RM+ E ++ N T++S+L+A H G +++G R ++ +
Sbjct: 454 NGLASEAIEVY-RMMEECREIKLNQGTWVSILAAYAHVGALQQG-MRIHGHLIKTNLHLD 511
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V C++DL K G L DA+ L + ++V W A++ +H + E A E+
Sbjct: 512 VFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGEKALKLFREMQ 570
Query: 238 I--LEPNNSGYCTLL 250
++P++ + +LL
Sbjct: 571 DEGVKPDHVTFISLL 585
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ QN +ALD +EM+ GI+ D VT+A++L CA LG +
Sbjct: 233 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTA 292
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IHLYV++ G + ++++ +AL++MYAK G+L + VF ++ +++ WNSII +
Sbjct: 293 TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQN 352
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A F +M +EP+ +T +S+ S + + R M G+ + V
Sbjct: 353 DDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVI 412
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M D+ +K G+++ A ++ + + V W L+ G
Sbjct: 413 GNAVM-DMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISG 450
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 6/215 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGRE 62
+D+ +W +MI+ Y +N FREA+D F ++ + D T VL AC L +D GR+
Sbjct: 137 KDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL--VD-GRK 193
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +V ++GF DV++ ++L+ MY++ G + + +F + +++ WN++I GL +G
Sbjct: 194 IHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGN 253
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +AL + D M E + + VT S+L C G + L + + + E+
Sbjct: 254 AAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVI-KHGLEFELFVSN 312
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++++ +K G L DA ++ + F + V W +++
Sbjct: 313 ALINMYAKFGNLGDAQKVFQ-QMFLRDVVSWNSII 346
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 9/221 (4%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
L + +H ++ G +I LV++YA G + S F +++ K+++ WNS+I
Sbjct: 91 LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150
Query: 119 VHGFAHEALAMFDR-MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+G EA+ F + ++ + + TF VL AC LV+ + G+
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ--TLVDGRKIHCWVFKLGFQWDVF 208
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V ++ + S+ G + A L F+ W A++ G + N A ++E M
Sbjct: 209 VA--ASLIHMYSRFGFVGIARSLFDDMPFRDMGS-WNAMISGLIQNGNAAQALDVLDE-M 264
Query: 238 ILEPNNSGYCTL--LLNMYAEVSRWAEVTKIRVAMKELGIE 276
LE N T+ +L + A++ + T I + + + G+E
Sbjct: 265 RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLE 305
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 202/327 (61%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT+MI SQN + EAL+ F EM+ G+ P+ VT+ +L AC ++ AL G+ H
Sbjct: 308 NVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAH 367
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G DVY+GSAL+DMYAKCG + S L F + +NL WNS++ G A+HG
Sbjct: 368 CFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTF 427
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F+ M +P+ V+F VLSACT GL EEG F SM+ + + +EHY CM
Sbjct: 428 EAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCM 487
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LL ++G LE+A +I+ F+P++ +WGALL C++H +++ IA + LEP N
Sbjct: 488 VTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNP 547
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA + W EV +R M+ G++K PG SWIE++ KV+ A D SHP
Sbjct: 548 GNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKN-PGYSWIEIKNKVHMLLAGDSSHPQM 606
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
+I L+KL ++K + YVP + +L
Sbjct: 607 PQIIEKLAKLTVEMKKSGYVPHTDFVL 633
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 37/253 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW MI+ ++++ + +A+ F M G+ PD ++++VL A L +G +IH
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIH 233
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKC-------------------------------GSLD 93
YV++ G D ++ SAL+DMY KC G +D
Sbjct: 234 CYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVD 293
Query: 94 RSLLVF--FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+L VF FK + N+ W S+I + +G EAL +F M E V+PN VT +L A
Sbjct: 294 NALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPA 353
Query: 152 CTH-AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C + A L+ S+ G I +V ++D+ +K G + A L N
Sbjct: 354 CGNIAALLHGKAAHCFSLRNG--IFNDVYVGSALIDMYAKCGRML-ASRLCFDMMPNRNL 410
Query: 211 VIWGALLGGCKLH 223
V W +L+ G +H
Sbjct: 411 VSWNSLMAGYAMH 423
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 76/308 (24%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
IS I +S+ F + F+ M GI PD + TV+ CA L AL G+++H +
Sbjct: 40 ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99
Query: 67 VMQIGFDID-------------------------------VYIGSALVDMYAKCGSLDRS 95
+ G +D V SAL+ +A+ G + +
Sbjct: 100 ALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKET 159
Query: 96 LLVFFKLR----EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+F++ R E NL WN +I G G +A+ MF M E ++P+G + SVL A
Sbjct: 160 KELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPA 219
Query: 152 C-----------THAGLVEE--GRRRFL---------------SMTCGYSITPEVEHYGC 183
H ++++ G +F+ M+ ++ EV+ C
Sbjct: 220 VGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGAC 279
Query: 184 --MVDLLSKAGLLEDALELIRSSK-FQPNAVIWGALLGGC----------KLHRNLEIAH 230
+V LS+ GL+++ALE+ + K N V W +++ C +L R ++I
Sbjct: 280 NALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEG 339
Query: 231 IAVNELMI 238
+ N + I
Sbjct: 340 VKPNSVTI 347
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW +++ Y+ + + EA++ F M+ G PD V+ VLSAC G + G
Sbjct: 405 MPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEG 464
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 210/326 (64%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+ + WT+MI Y+Q+ F+EA++ F EM+ G + D T+A VLSAC H GAL G
Sbjct: 104 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 163
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IHLY + ++D+ +AL+ MY+KCG + ++L +F L + ++F W+++I GLA++
Sbjct: 164 RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMN 223
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G + +AL +F +M + ++ PN +TF+ VL AC H G V++G F +MT Y++TP +E
Sbjct: 224 GESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIE 283
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +A LL +A + IR+ QP+ VIW +LL C+ H N+E+A A ++ L
Sbjct: 284 HYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEEL 343
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP G LL N+YA SRW +V ++R M I+K+ PG S++E++ V++ +D+
Sbjct: 344 EPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQ-PGCSFVEIDGLVHELFVADR 402
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
SHP IY ++ +++ L+ + P
Sbjct: 403 SHPEMGAIYETMISINKALQSKGFDP 428
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 37/222 (16%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M +G PD + VL ACA L L GREIH +++G +DV++ +AL+ ++ CG+
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 92 LDR---------------------------------SLLVFFKLREKNLFCWNSIIEGLA 118
++ +L VF ++ +N CW S+I G A
Sbjct: 61 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITPE 177
EA+ +F M + T VLSAC H G + +G R++ + C SI +
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG--RWIHLYCERNSIEMD 178
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ + SK G ++ ALE+ QP+ W A++ G
Sbjct: 179 LNARNALIGMYSKCGDIQKALEIFHGLT-QPDIFSWSAVISG 219
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 207/333 (62%), Gaps = 7/333 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI SW ++++ + Q L + M +GI PD VT+ TVL AC+HL AL G
Sbjct: 298 MREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHG 357
Query: 61 REIHLYVMQIGF-----DID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
REIH Y++ G DID V + +A++DMYAKCGS+ + LVF ++ K++ WN +I
Sbjct: 358 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMI 417
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G +HG+ +EAL MF RM ++P+ VTF+ VLSAC+HAG V +GR + M Y +
Sbjct: 418 MGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDV 477
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +EHY C++D+L +AG L++A EL + + N V+W ALL C+LH++ +A +A
Sbjct: 478 APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 537
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+ LEP + G L+ N+Y V R+ EV ++R M++ + K PG SWIE++ V+ F
Sbjct: 538 RVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKT-PGCSWIELKNGVHVF 596
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
++D++HP + IY+ L+ L +L+ YVP++
Sbjct: 597 VSADRAHPEAHSIYAGLNSLTARLREHGYVPDV 629
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 153/342 (44%), Gaps = 47/342 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++ W M+ Y+Q QF L+ F M + + P + T+ VLS A +G L+ G
Sbjct: 197 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH + M++G+D V + ++L+DMY KC ++ +L +F +REK++F WNSI+
Sbjct: 257 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQC 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L + DRM+ ++P+ VT +VL AC+H + GR GY I +
Sbjct: 317 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGRE-----IHGYMIVSGLGK 371
Query: 181 YG----------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
G ++D+ +K G + DA L+ + W ++ G +H
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMH------- 423
Query: 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
GY L M+ SR EV + +G+ C + ++ R
Sbjct: 424 --------------GYGNEALEMF---SRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 466
Query: 291 V-------YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
Y A + + + ++ +LDE +LA +P
Sbjct: 467 FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 508
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 6/198 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ ++ +I+ + N E + + +M+N G+ PD+ T + AC L L++ ++IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEI-KKIH 159
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + G ++DV+IGSALV+ Y K G ++ + + F +L +++ WN+++ G A G
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGC 183
L F RM E+V P+ T VLS G + GR +M GY V +
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSN--S 277
Query: 184 MVDLLSKAGLLEDALELI 201
++D+ K +EDALE+
Sbjct: 278 LIDMYGKCKCIEDALEIF 295
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKN 106
L A AH L G+EIH Y++ GF ++L++MY+KC ++ +L +F E N
Sbjct: 44 LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEIN 103
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
+F +N+II G +GF E + +M E V P+ TF + AC + ++
Sbjct: 104 VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI----KKIH 159
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + +V +V+ K GL+E A + + V+W A++ G
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNG 211
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 189/277 (68%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++ W MI Y + +EAL FNEM+ I+PD+VTM + LSAC+ LGALD+G
Sbjct: 272 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVG 331
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + ++V +G+AL+DMYAKCG + +++ VF +L +N W +II GLA+H
Sbjct: 332 IWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALH 391
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH A+A F MI +V P+ VTF+ +LSAC H GLVEEGR+ F M+ ++++P+++H
Sbjct: 392 GNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKH 451
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLE+A ELI+S + +AV+WGAL C++H N+ + A ++L+ ++
Sbjct: 452 YSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMD 511
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277
P++SG LL NMY E W E K R M++ G+EK
Sbjct: 512 PHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEK 548
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 27/278 (9%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ SW I + ++ REA+ + ++ G PD T + ACA L + +G EI
Sbjct: 114 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 173
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+V+ +GFD D+++ +A++ + CG LD + +F K ++L WNS+I G G
Sbjct: 174 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNL 231
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A +FD M + + V++ +++ +GL++ + F M +V +
Sbjct: 232 ESARKLFDSMTNKTM----VSWTTMVVGYAQSGLLDMAWKLFDEMP-----DKDVVPWNA 282
Query: 184 MVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCKLHRNLEIA-----HIAVNE 235
M+ A ++AL L +++ P+ V + L C L++ +I +E
Sbjct: 283 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 342
Query: 236 LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273
L + N T L++MYA+ + +TK +EL
Sbjct: 343 LSL----NVALGTALIDMYAKCGK---ITKAIQVFQEL 373
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
++L C + L ++I ++ G D + S L+ A + LD + F R
Sbjct: 55 SLLEKCKSISQL---KQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTR 111
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGR 162
N F WN I G EA+ ++ R++ + +P+ T+ + AC L+ G
Sbjct: 112 NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG- 170
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L ++ ++ LL G L+ A ++ S + + V W +++ G
Sbjct: 171 SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVR-DLVSWNSMING 226
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 206/327 (62%), Gaps = 2/327 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++ WTT+I+ Y++ Q +EA++ +EM+ SG+ D ++L+ACA G L LG+
Sbjct: 279 PVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGK 338
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
++H ++ F + ++ +DMYAKCG +D + VF ++ EK+L WNS+I G +H
Sbjct: 339 KMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIH 398
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +++ +F+ M+ E +P+ TFI +L ACTHAGLV EGR F SM Y I P++EH
Sbjct: 399 GHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEH 458
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G L++A L+RS F+PNA+I G LLG C++H ++++A L L
Sbjct: 459 YGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLV 518
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G +LL N+YA+ W V K+R M + G +K G S IE+E +V++F D S
Sbjct: 519 PSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKP-SGVSSIEVEEEVHEFTVRDWS 577
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S +IY+ + +L L+ YVP L
Sbjct: 578 HPKSGDIYNMIDRLVHDLRQVGYVPRL 604
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 15/240 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW +M+ +N AL F+EM D+V+ T+L G +D
Sbjct: 185 MEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPER----DRVSWNTMLDGFTKAGEMD-- 238
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ L+ DI + S +V Y+K G +D + ++F + KNL W +II G A
Sbjct: 239 KAFKLFERMAERDIVSW--STMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEK 296
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVE 179
G EA+ + D M + + FIS+L+AC +G++ G++ S + + + +V
Sbjct: 297 GQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKV- 355
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNE 235
+D+ +K G ++DA + K + + V W +++ G +H +++E+ + V E
Sbjct: 356 -LNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVRE 414
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 14/223 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFN---EMKNSGISPDQVTMATVLSACAHLGA- 56
+P ++ + +I YS + +L AF +M G+ D T +L C +
Sbjct: 80 VPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSW 139
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
L L + +H +V ++GF D+++ ++L+D Y +CG ++ ++ VF + E+++ WNS++ G
Sbjct: 140 LSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGG 199
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
L +G AL +FD M E + V++ ++L T AG +++ + F M
Sbjct: 200 LVKNGDLDGALKVFDEM----PERDRVSWNTMLDGFTKAGEMDKAFKLFERMA-----ER 250
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + MV SK G ++ A L + N V+W ++ G
Sbjct: 251 DIVSWSTMVCGYSKNGDMDMARMLFDRCPVK-NLVLWTTIISG 292
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 83/188 (44%), Gaps = 22/188 (11%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ D YI L+ Y+ +L ++ VF ++ + N+ +N +I ++
Sbjct: 39 KQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLS 98
Query: 121 GFAHEALAMFD---RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G +L F +M + V + T+ +L C G +LS+ +
Sbjct: 99 GNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCN-------GSSSWLSLV--KMVHAH 149
Query: 178 VEHYG---------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
VE G ++D + G +E A+++ S + + V W +++GG + +L+
Sbjct: 150 VEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVF-SGMEERDVVSWNSMVGGLVKNGDLDG 208
Query: 229 AHIAVNEL 236
A +E+
Sbjct: 209 ALKVFDEM 216
>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 204/324 (62%), Gaps = 3/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT MI+ QN+ + +AL F++M+ + P+ T+ T+L ACA L +G EIH
Sbjct: 503 NVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIH 562
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ M+ GF D+YI +AL+DMY K G L + VF ++EK L CWN ++ G A++G
Sbjct: 563 CFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGE 622
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +FD M V P+ +TF ++LS C ++GLV +G + F SM Y+I P +EHY CM
Sbjct: 623 EVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCM 682
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL KAG L++AL+ I + + +A IWGA+L C+LH++++IA IA L+ LEP NS
Sbjct: 683 VDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNS 742
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS-SWIEMERKVYQFAASDKSHPA 303
L++N+Y+ RW +V +++ +M LG+ + P SWI++++ ++ F+ KSHP
Sbjct: 743 ANYALMMNIYSTFDRWGDVERLKESMTALGV--KIPNVWSWIQVKQTIHVFSTEGKSHPE 800
Query: 304 SDEIYSSLSKLDEQLKLASYVPEL 327
EIY L +L ++K YV ++
Sbjct: 801 EGEIYFELYQLISEIKKLGYVLDI 824
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 64/313 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+W ++++ + + L F ++++G PD ++ + L A LG +LG+EIH
Sbjct: 332 DIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIH 391
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y+M+ + DVY+ ++LVD Y K LD++ +VF + KN+ WNS+I G G
Sbjct: 392 GYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFD 451
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A + ++M E ++P+ VT+ S++S GYS++ E +
Sbjct: 452 NAEKLLNQMKEEGIKPDLVTWNSLVS--------------------GYSMSGRSEEALAV 491
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPN 242
++ + GL PN V W A++ GC + N A +++ ++PN
Sbjct: 492 INRIKSLGL-------------TPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPN 538
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
++ CTLL + C GSS +++ +++ F+ H
Sbjct: 539 STTICTLL--------------------------RACAGSSLLKIGEEIHCFSM---RHG 569
Query: 303 ASDEIYSSLSKLD 315
D+IY + + +D
Sbjct: 570 FLDDIYIATALID 582
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 3 ARDIISWTTMITCYSQ-NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
AR+ + W + I ++ E L F E+ + G+ D + VL C L L LG
Sbjct: 92 ARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGM 151
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E+H +++ GF +DV++ AL+++Y K +D + VF + + F WN+I+
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSE 211
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+AL +F RM + + T + +L AC + EG++
Sbjct: 212 KWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ 253
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 76/257 (29%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++I +W ++I+ Y+ F A N+MK GI PD VT
Sbjct: 432 KNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTW------------------- 472
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----KNLFCWNSIIEGLAV 119
++LV Y+ G + +L V +++ N+ W ++I G
Sbjct: 473 ----------------NSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQ 516
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+ +AL F +M ENV+PN T ++L AC + L++ G SM G+ ++
Sbjct: 517 NENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGF--LDDI 574
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSK--------------------------------- 205
++D+ K G L+ A E+ R+ K
Sbjct: 575 YIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKT 634
Query: 206 -FQPNAVIWGALLGGCK 221
+P+A+ + ALL GCK
Sbjct: 635 GVRPDAITFTALLSGCK 651
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 44/239 (18%)
Query: 61 REIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE+H ++++ + V + +++ Y + G + + VFF +N WNS IE A
Sbjct: 48 RELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFAS 107
Query: 120 HGF-AHEALAMFDRMIYENVEPNGVTFISVLSAC-----------THAGLVEEGRRRFLS 167
G +HE LA+F + + V+ + VL C HA LV+ G +
Sbjct: 108 FGGDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVH 167
Query: 168 MTCG-----------------YSITPEVEHY----GCMVDLLSKAGLLEDALELIR---- 202
++C + TP E + M +L S+ EDALEL R
Sbjct: 168 LSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEK--WEDALELFRRMQS 225
Query: 203 -SSKFQPNAVIWGALLGGCKLHRNL-EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259
S+K ++ LL C R L E I + +N+ C +++MY+ +R
Sbjct: 226 ASAKATDGTIV--KLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNR 282
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW +MI+CY + Q+REALD FN+M+NS + PD+ T+ ++L+AC+ LG L +G
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 273
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y++ V + ++L+DMYAKCG + +L +F ++ KNL WN II LA+H
Sbjct: 274 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 333
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F+ M + P+ +T +LSAC+H+GLV+ G F M Y + E+EH
Sbjct: 334 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEH 393
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + GLL +A+ELI +P+ V+WGALLG C++H N+EI + +L+ LE
Sbjct: 394 YACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 453
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L+ N+Y E RW +V KIR M + GI+K SS IE++ +Y+F DK
Sbjct: 454 PHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISS-IEIDGCIYEFMVDDKR 512
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S IY+ L +L + L+ A Y+ + ++
Sbjct: 513 HKISSSIYAMLDQLTDHLRSAGYLCNISSVF 543
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 73/291 (25%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + ++I YS + +A+ F M SG+SP++ T+ VL AC A
Sbjct: 48 IPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEA 107
Query: 61 REIHLYVMQIG---------------------------FD-------IDVYIGSALVDMY 86
+H +++G FD ID+ + +ALVDMY
Sbjct: 108 VLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMY 167
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA----------------------- 123
AKCG+L + +F + +EKN+ W S+I A HG
Sbjct: 168 AKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMIS 227
Query: 124 --------HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGY 172
EAL +F++M V P+ T +S+L+AC+ G + G++ LS Y
Sbjct: 228 CYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAY 287
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+T Y ++D+ +K G + AL++ + N V W ++G LH
Sbjct: 288 GVTL----YNSLIDMYAKCGPVVTALDIFLEMPGK-NLVSWNVIIGALALH 333
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 48/284 (16%)
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G L + +F ++ + N F +NS+I G + +A+ +F RMI + PN T VL
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 150 SAC-----------THA------------------------GLVEEGRRRFLSMTCGYSI 174
AC H GL+ R+ F +T I
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI 155
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
V + +VD+ +K G L A + ++ + N V W +++ H ++E+A +
Sbjct: 156 DIIVRN--ALVDMYAKCGNLHSAQAIFDRTQ-EKNVVSWTSMISAYAQHGSIEVARQIFD 212
Query: 235 EL---MILEPNNSGYCTLLLNMYAE-VSRWAEVTKIRVAMKE---LGIEKRCPGSSWIEM 287
++ ++ N+ C L Y E + + ++ RV E + I C + M
Sbjct: 213 QMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVM 272
Query: 288 ERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+K++ + S+K +Y+SL +D K V L+ L
Sbjct: 273 GKKIHNYILSNKGAYGV-TLYNSL--IDMYAKCGPVVTALDIFL 313
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 208/334 (62%), Gaps = 4/334 (1%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW +M+ ++ N + E L F EM +PD T+ +VL+ACA GAL
Sbjct: 177 MPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALA 236
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
LGR +H+YV ++G + ++ +AL+D+YAKCGS++ + +F ++ + + W S+I GL
Sbjct: 237 LGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGL 296
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
A +GF EAL +F M E + P +T + VL AC+H GLV++G R F M Y I+P
Sbjct: 297 AANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPR 356
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+EH GCMVDLL +AG +E+A + I + +PNAV+W LLG C +H+ LE+ +A L+
Sbjct: 357 IEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLV 416
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+P +SG LL N+YA V WA+V +R M + + K PG S +E+ VY+F
Sbjct: 417 ELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKN-PGHSLVELRNSVYEFVMG 475
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+SHP S++IY L+++ E+L+ Y+P +L
Sbjct: 476 DRSHPESEQIYEMLAEIAERLRREGYIPRTSNVL 509
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
PD T ++ ACA L AL G +H + GF V++ ++LV +Y CG + + V
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 173
Query: 99 F--FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
F +R +NL WNS++ A +G +E L +F M+ + P+G T +SVL+AC G
Sbjct: 174 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 233
Query: 157 LVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+ GRR + + G V + ++DL +K G + DA + V W +
Sbjct: 234 ALALGRRVHVYVEKVGLVENSHVSN--ALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTS 291
Query: 216 LLGG 219
L+ G
Sbjct: 292 LIVG 295
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 205/318 (64%), Gaps = 2/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW TMI+CY Q Q+ EALD + +M++ G +PD+ T+ VLSAC +G L +G
Sbjct: 238 MPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVG 297
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +HLY+ + D+ + ++L+DMYAKCG +D ++ +F ++ +N+ WN II GLA+H
Sbjct: 298 KMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMH 357
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ F M+ N P+G+TF+++LS+C+H GL+E G+ F SM Y++ EVEH
Sbjct: 358 GRALDAITFFRSMV-RNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEH 416
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G LE A+ LI+ +P+ V+WGALLG C++H N++I + +L+ LE
Sbjct: 417 YACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELE 476
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ G L+ N+ E ++W ++ ++R MKE G K G S IE+ +++F D
Sbjct: 477 GISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDM-GVSSIEINNSIHEFGVEDIR 535
Query: 301 HPASDEIYSSLSKLDEQL 318
H +S EIY+ + +L L
Sbjct: 536 HESSSEIYAVVDQLSYHL 553
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 33/254 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +MI Y+Q REA F EM+ G D+ T+A++L AC+ G L+ G
Sbjct: 106 MAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFG 165
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
R +H ++ G +D+ +G ALVDMY+KC
Sbjct: 166 RLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKH 225
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
GS+D + F + E+N WN++I G HEAL ++ +M P+ T + VL
Sbjct: 226 GSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVL 285
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC G + G+ L + P++ ++D+ +K G ++ A+ L R N
Sbjct: 286 SACGRIGDLTVGKMVHLYIRDNIH-NPDISLINSLLDMYAKCGQVDTAIRLFR-EMCNRN 343
Query: 210 AVIWGALLGGCKLH 223
V W ++GG +H
Sbjct: 344 VVSWNVIIGGLAMH 357
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 11/273 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D + + T+ Y + REAL M G+ P++ T+ V+ AC A D +H
Sbjct: 9 DRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAVH 68
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++GF V++ +AL+ YA GSL S F ++ +N+ WNS+I G A G
Sbjct: 69 GVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTR 128
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGC 183
EA A+F M + + T S+L AC+ G +E GR L + G + ++ G
Sbjct: 129 EACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPV--DLILGGA 186
Query: 184 MVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
+VD+ SK G D R + P + V W ++L H +++ A + + E
Sbjct: 187 LVDMYSKCG---DLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMP--ER 241
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274
N + T +++ Y + ++ E + M+ G
Sbjct: 242 NTVSWNT-MISCYVQRGQYHEALDLYKQMQSHG 273
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +++W MI Y +N + + L F M +G+ P+ +++ +VL C++L AL LG
Sbjct: 223 MSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLG 282
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V + D G++LV MY+KCG L + +F ++ K++ CWN++I G A H
Sbjct: 283 KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQH 342
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD M E ++P+ +TF++VL AC HAGLV+ G + F +M + I + EH
Sbjct: 343 GAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEH 402
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A++LI+S F+P+ I+G LLG C++H+NL +A A L+ L+
Sbjct: 403 YACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELD 462
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + L N+YA +RW V IR +MK+ + K PG SWIE+ V+ F +SD+
Sbjct: 463 PTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVK-IPGYSWIEINSVVHGFRSSDRL 521
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L L++++KLA YVP+LE +L
Sbjct: 522 HPELASIHEKLKDLEKKMKLAGYVPDLEFVL 552
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ SW TMI+ +Q EA F+ M V+ + ++S G LD
Sbjct: 130 MPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNC----VSWSAMVSGYVACGDLDAA 185
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E Y + V +A++ Y K G ++ + +F ++ + L WN++I G +
Sbjct: 186 VEC-FYAAPMR---SVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVEN 241
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A + L +F M+ V+PN ++ SVL C++ ++ G ++ + C ++ +
Sbjct: 242 GRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLG-KQVHQLVCKCPLSSDTTA 300
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + SK G L+DA EL + + V W A++ G H
Sbjct: 301 GTSLVSMYSKCGDLKDAWELFIQIP-RKDVVCWNAMISGYAQH 342
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
+V + L+ Y +CG +D ++ VF ++ K+ WNSI+ A E + R +
Sbjct: 40 NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFE----YARQL 95
Query: 135 YENV-EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193
+E + +PN V++ +L+ H V + R F SM +V + M+ L++ GL
Sbjct: 96 FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMP-----LKDVASWNTMISALAQVGL 150
Query: 194 LEDALELIRSSKFQPNAVIWGALLGG 219
+ +A L S+ + N V W A++ G
Sbjct: 151 MGEARRLF-SAMPEKNCVSWSAMVSG 175
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SWT+MI Y++ ++ F+EM+ + P+ +TMA +L ACA L AL+ G
Sbjct: 285 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERG 344
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ GF +D ++ +ALVDMY KCG+L + L+F + EK+L W +I G +H
Sbjct: 345 QEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMH 404
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+A F+ M +EP+ V+FIS+L AC+H+GL++EG F M I P+ EH
Sbjct: 405 GYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEH 464
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL++AG L A + I+ +P+A IWGALL GC+++ ++++A + LE
Sbjct: 465 YACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE 524
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+GY LL N+YAE +W EV K+R + G+ K PG SWIE++ KV+ F D S
Sbjct: 525 PENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN-PGCSWIEIKGKVHIFVTGDSS 583
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +++I L K ++K + P++ L
Sbjct: 584 HPLANKIELLLKKTRTRMKEEGHFPKMRYAL 614
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 33/250 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +MI+ Y N + LD F +M GI+ D TM +V
Sbjct: 214 RDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV---------------- 257
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
++ + + L+DMY+K G+L+ ++ VF + E+++ W S+I G A G +
Sbjct: 258 -----------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLS 306
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
++ +F M E++ PN +T +L AC +E G+ + G+S+ V +
Sbjct: 307 DMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN-- 364
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
+VD+ K G L A L+ + + V W ++ G +H A A NE+ +E
Sbjct: 365 ALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIE 423
Query: 241 PNNSGYCTLL 250
P+ + ++L
Sbjct: 424 PDEVSFISIL 433
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 31 EMKNSGISPDQ--VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
E+ N PD T +VL CA L ++ GR IH + ++D +GS LV MY
Sbjct: 89 ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-------------IY 135
CG L +F K+ + +F WN ++ G A G E+L++F RM ++
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208
Query: 136 ENV-EPNGVTFISVLSACTHAGLVEEGRRRFLSM-------TCGYSITPEVEHYGCMVDL 187
+ + + + +++ S++S GL E+G F M ++ E+ C++D+
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDM 268
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
SK+G L A+++ + + + V W +++ G
Sbjct: 269 YSKSGNLNSAIQVFETMG-ERSVVSWTSMIAG 299
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 207/321 (64%), Gaps = 2/321 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP +++ SWTT+I+ +SQN + EAL F M K+ + P+ +T+ +VL ACA+LG L++
Sbjct: 174 MPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEI 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR + Y + GF ++Y+ +A ++MY+KCG +D + +F ++ ++NL WNS+I LA
Sbjct: 234 GRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLA 293
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL ++ +M+ E P+ VTF+ +L AC H G+V +G+ SM + I+P++
Sbjct: 294 THGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISPKL 353
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL + G L++A +LI++ +P+AV+WG LLG C H N+EIA IA LM
Sbjct: 354 EHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALMK 413
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G C ++ N+YA +W V ++R MK+ + K S ++E +V++F D
Sbjct: 414 LEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEAGVEVHKFTVED 473
Query: 299 KSHPASDEIYSSLSKLDEQLK 319
KSHP S EIY L ++ ++K
Sbjct: 474 KSHPRSYEIYQVLDEISRRMK 494
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 35/251 (13%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I + +I YS + Q E++ +N + GI P+ T + +A A + R +H
Sbjct: 47 IFLYNKLIQSYSVHHQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHS 106
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ GF+ D + +AL+ YAK G+L + VF ++ +++ WN++I G G
Sbjct: 107 QFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKA 166
Query: 126 ALAMFDRMIYEN--------------------------------VEPNGVTFISVLSACT 153
A+ +FD M +N V+PN +T +SVL AC
Sbjct: 167 AMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACA 226
Query: 154 HAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ G +E GRR + G+ V + +++ SK G+++ A L Q N +
Sbjct: 227 NLGELEIGRRLEGYARENGFFDNIYVRN--ATLEMYSKCGMIDVAKRLFDEIGNQRNLIS 284
Query: 213 WGALLGGCKLH 223
W +++G H
Sbjct: 285 WNSMIGSLATH 295
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW +MI+CY + Q+REALD FN+M+NS + PD+ T+ ++L+AC+ LG L +G
Sbjct: 353 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 412
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y++ V + ++L+DMYAKCG + +L +F ++ KNL WN II LA+H
Sbjct: 413 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 472
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F+ M + P+ +T +LSAC+H+GLV+ G F M Y + E+EH
Sbjct: 473 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEH 532
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + GLL +A+ELI +P+ V+WGALLG C++H N+EI + +L+ LE
Sbjct: 533 YACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 592
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L+ N+Y E RW +V KIR M + GI+K SS IE++ +Y+F DK
Sbjct: 593 PHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISS-IEIDGCIYEFMVDDKR 651
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S IY+ L +L + L+ A Y+ + ++
Sbjct: 652 HKISSSIYAMLDQLTDHLRSAGYLCNISSVF 682
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 35/279 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + ++I YS + +A+ F M SG+SP++ T+ VL AC A
Sbjct: 174 IPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEA 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++G V++ +AL+ +Y CG + + +F + +K L WNS+IE V
Sbjct: 234 VLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVK 293
Query: 121 ----------------GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
G H A A+FDR E N V++ S++SA G +E R+
Sbjct: 294 IDIIVRNALXDMYAKCGNLHSAQAIFDR----TQEKNVVSWTSMISAYAQHGSIEVARQI 349
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCK 221
F M V + M+ + G +AL+L +R+S+ P+ ++L C
Sbjct: 350 FDQMP-----GKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACS 404
Query: 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLLN----MYAE 256
+L + N ++ N Y L N MYA+
Sbjct: 405 QLGDLVMGKKIHNYIL---SNKGAYGVTLYNSLIDMYAK 440
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G L + +F ++ + N F +NS+I G + +A+ +F RMI + PN T VL
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221
Query: 150 SAC 152
AC
Sbjct: 222 KAC 224
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 212/329 (64%), Gaps = 3/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ARD+I+W +I+ Y+QN EA+ F+ MK ++ +++T+ VLSACA +GALDLG
Sbjct: 285 MAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLG 344
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++I Y Q GF D+++ +AL+DMYAK GSLD + VF + +KN WN++I LA H
Sbjct: 345 KQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAH 404
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EAL++F M E PN +TF+ +LSAC HAGLV+EG R F M+ + + P++
Sbjct: 405 GKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKI 464
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL++AG L +A +LIR +P+ V GALLG C+ +N++I + ++
Sbjct: 465 EHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILE 524
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
++P+NSG + +YA ++ W + ++R+ M++ GI K PG SWIE+E +++F A D
Sbjct: 525 VDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITK-TPGCSWIEVENHLHEFHAGD 583
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPEL 327
S ++ + + L E+LK YVP++
Sbjct: 584 GLCLDSIDLSNIIDLLYEELKREGYVPKV 612
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 3/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P RD +SW +MI Y++ REA++ F EM + G PD++++ ++L AC LG L+L
Sbjct: 183 IPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLEL 242
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + +V++ G ++ YIGSAL+ MYAKCG L+ + +F + +++ WN++I G A
Sbjct: 243 GRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQ 302
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A EA+ +F M + V N +T +VLSAC G ++ G ++ ++
Sbjct: 303 NGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLG-KQIDEYASQRGFQHDIF 361
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K+G L++A + + Q N W A++ H
Sbjct: 362 VATALIDMYAKSGSLDNAQRVFKDMP-QKNEASWNAMISALAAH 404
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 5/197 (2%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
AL F+ M + ++PD T +CA+L +L H + ++ D + +L+
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLIT 165
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGV 143
YA+CG + + VF ++ ++ WNS+I G A G A EA+ +F M + EP+ +
Sbjct: 166 AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEM 225
Query: 144 TFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
+ +S+L AC G +E GR + G ++ + ++ + +K G LE A +
Sbjct: 226 SLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIG--SALISMYAKCGELESARRIFD 283
Query: 203 SSKFQPNAVIWGALLGG 219
+ + + W A++ G
Sbjct: 284 GMAAR-DVITWNAVISG 299
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 213/331 (64%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SW +MI+CY + Q+REALD FN+M+NS + PD+ T+ ++L+AC+ LG L +G
Sbjct: 281 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 340
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y++ V + ++L+DMYAKCG + +L +F ++ KNL WN II LA+H
Sbjct: 341 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 400
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F+ M + P+ +T +LSAC+H+GLV+ G F M Y + E+EH
Sbjct: 401 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEH 460
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + GLL +A+ELI +P+ V+WGALLG C++H N+EI + +L+ LE
Sbjct: 461 YACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 520
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L+ N+Y E RW +V KIR M + GI+K SS IE++ +Y+F DK
Sbjct: 521 PHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISS-IEIDGCIYEFMVDDKR 579
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S IY+ L +L + L+ A Y+ + ++
Sbjct: 580 HKISSSIYAMLDQLTDHLRSAGYLCNISSVF 610
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 39/254 (15%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW +MI Y+ ++EA F +M+ G+ PD T +LS C+ LDLGR +
Sbjct: 152 KTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYV 211
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G ID+ + +ALVDMYAKCG+L + +F + +EKN+ W S+I A HG
Sbjct: 212 HFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSI 271
Query: 124 -------------------------------HEALAMFDRMIYENVEPNGVTFISVLSAC 152
EAL +F++M V P+ T +S+L+AC
Sbjct: 272 EVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAAC 331
Query: 153 THAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
+ G + G++ LS Y +T Y ++D+ +K G + AL++ + N
Sbjct: 332 SQLGDLVMGKKIHNYILSNKGAYGVTL----YNSLIDMYAKCGPVVTALDIFLEMPGK-N 386
Query: 210 AVIWGALLGGCKLH 223
V W ++G LH
Sbjct: 387 LVSWNVIIGALALH 400
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 160/339 (47%), Gaps = 14/339 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + ++I YS + +A+ F M SG+SP++ T+ VL AC A
Sbjct: 48 IPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEA 107
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++G V++ +AL+ +Y CG + + +F + +K L WNS+I G A
Sbjct: 108 VLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHM 167
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G EA +F +M +EP+G TF+++LS C+ + ++ GR F G I V
Sbjct: 168 GNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVR 227
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL--- 236
+ +VD+ +K G L A + ++ + N V W +++ H ++E+A +++
Sbjct: 228 N--ALVDMYAKCGNLHSAQAIFDRTQ-EKNVVSWTSMISAYAQHGSIEVARQIFDQMPGK 284
Query: 237 MILEPNNSGYCTLLLNMYAE-VSRWAEVTKIRVAMKE---LGIEKRCPGSSWIEMERKVY 292
++ N+ C L Y E + + ++ RV E + I C + M +K++
Sbjct: 285 NVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIH 344
Query: 293 QFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ S+K +Y+SL +D K V L+ L
Sbjct: 345 NYILSNKGAYGV-TLYNSL--IDMYAKCGPVVTALDIFL 380
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G L + +F ++ + N F +NS+I G + +A+ +F RMI + PN T VL
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 150 SAC 152
AC
Sbjct: 96 KAC 98
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 204/329 (62%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
+D+ +W+ +I Y +N + EAL F E+ S + P++VT+ V+SACA LG L+ GR
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRW 303
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y+ + V + ++L+DM++KCG +D + +F + K+L WNS++ GLA+HG
Sbjct: 304 VHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGL 363
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EALA F M +++P+ +TFI VL+AC+HAGLV+EG++ F + Y + + EHYG
Sbjct: 364 GREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYG 423
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AGLL +A E IR QP+ IWG++LG C+++ NLE+ A L+ LEP
Sbjct: 424 CMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPT 483
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N G LL N+YA W EV K+R M E GI+K PG S + ++ + F A D SHP
Sbjct: 484 NDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQK-TPGCSSVVIDNIAHSFLAGDCSHP 542
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
EI L ++ E+LKL YV + +L
Sbjct: 543 EIAEISIMLRQVREKLKLVGYVADTSEVL 571
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 136/227 (59%), Gaps = 9/227 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ + WT+MI+ Y +N EAL + +M+ G SPD+VTMAT++SACA L L +G
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ ++ I +GSALV+MYAKCG L + VF +L +K+++ W+++I G +
Sbjct: 200 MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKN 259
Query: 121 GFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTC-GYSITP 176
+ EAL +F + N+ PN VT ++V+SAC G +E GR +++ T G+S++
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSL 319
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ SK G ++ A + S ++ + + W +++ G LH
Sbjct: 320 N----NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALH 361
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+++W +M+ + + R AL ++ EM + S PD+ T ++L CA L +G+ +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ D+YI + L++MYA CG L + +F ++ +N W S+I G +
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSAC 152
+EAL ++ +M + P+ VT +++SAC
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSAC 190
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISW +M+ + + REAL F+ M+ + + PD++T VL+AC+H G + G
Sbjct: 343 MSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEG 402
Query: 61 REI 63
+++
Sbjct: 403 KKL 405
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 202/326 (61%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI+C+S +A ++ M N G+ D T+ +LS+CAH+ AL++G
Sbjct: 168 MPVRDLVSWNAMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMG 227
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H I + V++ +AL+DMYAKCGSL+ ++ VF +R++++ WNS+I G VH
Sbjct: 228 VMLHRIACDIRCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVH 287
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA++ F +M+ V PN VTF+ +L C+H GLV+EG F M+ + +TP V+H
Sbjct: 288 GHGVEAISFFRKMVASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKH 347
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG LE ALE+I +S + V+W LLG CK+HRNLE+ +A+ +L+ LE
Sbjct: 348 YGCMVDLFGRAGQLEKALEMIHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N+G L+ ++Y+ + +R ++ + + PG SWIE+ +V++F DK
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQGFASMRKLIRSHDL-RTIPGWSWIEIGDQVHKFVIDDKM 466
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S IYS L ++ + LA Y PE
Sbjct: 467 HPESALIYSELGEVINRAILAGYKPE 492
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 3/217 (1%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLY 66
+W +I +S + + +N M S +S PD T + L AC + + E+H
Sbjct: 73 AWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGS 132
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ GF D + + LV Y+ GS++ + VF ++ ++L WN++I + G H+A
Sbjct: 133 VIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQA 192
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+M+ RM E V + T +++LS+C H + G + C V ++D
Sbjct: 193 FSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMG-VMLHRIACDIRCESSVFVCNALID 251
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +K G LE+A+ + + + + + + W +++ G +H
Sbjct: 252 MYAKCGSLENAVGVFKGMR-KRDVLTWNSMIIGYGVH 287
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 206/334 (61%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R II+W ++I+ Y QN +E++ F+ M SG PD T+ ++LS+C+ LGALD G
Sbjct: 250 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 309
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y GFD++V +G++L++MY +CG++ ++ VF ++E+N+ W ++I G +H
Sbjct: 310 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 369
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +A+ +F M PN +TF++VLSAC H+GL+++GRR F SM Y + P VEH
Sbjct: 370 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEH 429
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKF---QPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
CMVD+ +AGLL DA + I+ KF +P +W ++LG C++HRN ++ ++
Sbjct: 430 NVCMVDMFGRAGLLNDAYQFIK--KFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVL 487
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
+EP N G+ +L N+YA R V +R M ++K+ G S IE+ RK Y F+
Sbjct: 488 SVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQV-GYSTIEINRKTYLFSMG 546
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DKSHP ++ IY L +L + + YVP E+++
Sbjct: 547 DKSHPQTNTIYRYLDELMCRCSESGYVPAPESLM 580
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 20/204 (9%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
+ M SG T +V+ ACA L AL LG+EIH +VM G+ D+Y+ +AL+ +YAK
Sbjct: 177 YRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAK 236
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+ + VF + ++ + WNS+I G +G E++ +F M+ +P+ T +S+
Sbjct: 237 ASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSL 296
Query: 149 LSACTHAGLVE---------EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
LS+C+ G ++ +G L++ G S ++++ ++ G + A E
Sbjct: 297 LSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS----------LINMYTRCGNVSKARE 346
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ S K + N V W A++ G +H
Sbjct: 347 VFDSMK-ERNVVTWTAMISGYGMH 369
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ G + + L+ + GS+ + +F + + F ++S+++ +
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
GF+ + + + RM++ + TF SV+ AC + G+ M CGY V+
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ 227
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ L +KA ++ A ++ + Q + W +L+ G L I + LM+
Sbjct: 228 --AALIALYAKASDMKVAKKVFDAMP-QRTIIAWNSLISGYD-QNGLPQESIGLFHLMME 283
Query: 239 --LEPNNSGYCTLL 250
+P+++ +LL
Sbjct: 284 SGFQPDSATIVSLL 297
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 204/344 (59%), Gaps = 15/344 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTM+ ++N + R+AL F EM+ + + DQV + LSACA LG L LG
Sbjct: 133 MPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELGDLKLG 192
Query: 61 REIHLYVMQIGF-----DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
R IH YV Q V + +AL+ MYA CG L + VF K+ K+ W S+I
Sbjct: 193 RWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIM 252
Query: 116 GLAVHGFAHEALAMFDRMIYENVE-----PNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170
A G EAL +F M+ + V+ P+ +TFI VL AC+HAG V+EG + F SM
Sbjct: 253 AFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASMKH 312
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
+ I+P +EHYGCMVDLLS+AGLL++A LI + PN IWGALLGGC++HRN E+A
Sbjct: 313 TWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALLGGCRIHRNSELAS 372
Query: 231 IAVNELMILEPNN---SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
N+L + E N +GY LL N+YA RW +V +R M E+G+ K+ PG SWI++
Sbjct: 373 QVENKL-VPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGV-KKPPGRSWIQI 430
Query: 288 ERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
V+ F A D +H S IY +L + +Q L Y E+ L
Sbjct: 431 NGVVHNFIAGDMTHKHSSFIYETLRDVTKQANLEGYDREIIVFL 474
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I Y+++ +A++ + M +S PD T +++LSACA G + G ++H V+
Sbjct: 9 WNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVL 68
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS---------------- 112
G+ +V++ ++L+ YA G ++R+ VF + ++++ WNS
Sbjct: 69 VKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGARR 128
Query: 113 ---------------IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
++ G A +G + +AL +F M VE + V ++ LSAC G
Sbjct: 129 VFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELGD 188
Query: 158 VEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
++ GR +RF++ P V ++ + + G+L +A ++
Sbjct: 189 LKLGRWIHWYVQQRFVARNWQ---QPSVRLNNALIHMYASCGILHEAYQVF 236
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-M 168
WN +I G A +A+ + M+ EP+G T S+LSAC GLV+EG + + +
Sbjct: 9 WNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVL 68
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GY V+ ++ + G +E A + Q + V W ++L G
Sbjct: 69 VKGYCSNVFVD--TSLITFYAGRGGVERARHVFDGMP-QRSVVSWNSMLAG 116
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 206/328 (62%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW MI Y N EA+D F +M++ + PD +++A+VL AC L AL LGR I
Sbjct: 269 KSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRI 328
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ ++ + +AL+DMYAKCG L+ + VF +++ +++ W S+I ++G
Sbjct: 329 HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKG 388
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+++F RM + P+ + F+SVLSAC+HAGL++EGR F MT I P +EH+ C
Sbjct: 389 RDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVC 448
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG +++A I+ +PN +WGALL C+++ N+ I +A ++L L P
Sbjct: 449 MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQ 508
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N+YA+ RW +VT +R MK GI K+ PG S E++ +V+ F A D+SHP
Sbjct: 509 SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI-KKMPGVSNFELDNRVHTFLAGDQSHPQ 567
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S +IY L ++K A YVPE ++ L
Sbjct: 568 SKQIYEELDVSVGKMKEAGYVPETDSAL 595
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++ + MI Y N + +AL F M GI PD T VL A + L +G
Sbjct: 97 IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVG 156
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G D++V++G+ L+ MY KCG L + V ++ +++ WNS++ G A +
Sbjct: 157 MQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARN 216
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
G +AL + M ++P+ T S+L A T+ L
Sbjct: 217 GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 253
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 39/219 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH--LGALD 58
MP RD++SW +++ ++N QF +AL+ EM+ G+ PD TMA++L A + L +
Sbjct: 198 MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVS 257
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+E+ F KL K+L WN +I
Sbjct: 258 FVKEM-----------------------------------FMKLANKSLVSWNVMIAVYM 282
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+ EA+ +F +M V+P+ ++ SVL AC + G RR + P +
Sbjct: 283 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG-RRIHEYVVRKRLQPNL 341
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ +K G LE A E+ KF+ + V W +++
Sbjct: 342 LLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMI 379
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT+MI+ Y N + R+A+ F+ M++ G++PD + +VLSAC+H G LD G
Sbjct: 367 MKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEG 426
Query: 61 R---EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
R ++ +I I+ ++ +VD+ + G +D + ++ E N W +++
Sbjct: 427 RYYFKLMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 484
Query: 117 LAVH 120
V+
Sbjct: 485 CRVY 488
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 30/199 (15%)
Query: 69 QIGFDIDVY----IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+I D D++ +G L+ YA CG + +F ++ +KN+ +N +I +
Sbjct: 60 KICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYS 119
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFLSMTCGYS 173
+AL +F M ++P+ T+ VL A + HA +V G + + G
Sbjct: 120 DALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNG-- 177
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
++ + K G L +A ++ + + V W +L+ GC + + A
Sbjct: 178 ----------LISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQFDDALEVC 226
Query: 234 N--ELMILEPNNSGYCTLL 250
EL+ L+P+ +LL
Sbjct: 227 KEMELLGLKPDAGTMASLL 245
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 208/325 (64%), Gaps = 1/325 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW++M++ Y QN +F +AL F+ M S + D+ T+ +V+SACA G L+LGR++H Y
Sbjct: 602 VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGY 661
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+ +IG +DV++GS+++DMY KCGSL+ + L+F + +++N+ W S+I G A+HG EA
Sbjct: 662 IQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREA 721
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ +F+ MI E + PN V+F+ VL+AC+HAGL+EEG + F M Y I P EH+ CMVD
Sbjct: 722 VRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVD 781
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246
L +AG L + E I ++ + +W + L C++H+N+E+ +L+ LEP ++G
Sbjct: 782 LYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGP 841
Query: 247 CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDE 306
L ++ A RW E KIR M++ G++K P SWI+++ +V+ F D+SHP +
Sbjct: 842 YILFSSICATEHRWEEAAKIRSLMQQRGVKKN-PSQSWIQLKNQVHSFVMGDRSHPQDTK 900
Query: 307 IYSSLSKLDEQLKLASYVPELEAML 331
IYS L +L +LK Y ++ ++
Sbjct: 901 IYSYLDELIGRLKEIGYSTDVTPVM 925
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 23/269 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D SW TMI +N R AL+ +M +G + +++T + L + L L LG
Sbjct: 480 LPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLG 539
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF------------ 108
++IH V+++G D ++ ++L+DMY KCG ++++ ++F L +++
Sbjct: 540 KQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVV 599
Query: 109 ---CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-R 164
W+S++ G +G +AL F MI VE + T SV+SAC AG++E GR+
Sbjct: 600 ESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVH 659
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR 224
G+ + +V ++D+ K G L DA + +K N V+W +++ GC LH
Sbjct: 660 GYIQKIGHGL--DVFLGSSIIDMYVKCGSLNDAWLIFNQAK-DRNVVLWTSMISGCALHG 716
Query: 225 NLEIAHIAVNELMILE---PNNSGYCTLL 250
A + + ELMI E PN + +L
Sbjct: 717 QGREA-VRLFELMINEGITPNEVSFVGVL 744
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 32/177 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-AHLGALDL 59
+P D+ SWT +I+ +++ + L F +M++ G+ P+Q T++ VL +C +++ +
Sbjct: 347 IPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRI 406
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------ 89
G+ IH ++++ G D+D + ++++D Y KC
Sbjct: 407 GKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQ 466
Query: 90 -GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
G + +S+ +F +L K+ WN++I+GL +G AL + +M+ N +TF
Sbjct: 467 IGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTF 523
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++ WT+MI+ + + Q REA+ F M N GI+P++V+ VL+AC+H G L+ G +
Sbjct: 700 RNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKY 759
Query: 64 HLYVMQI-GFDIDVYIGSALVDMYAKCGSLD 93
+ ++ G + +VD+Y + G L+
Sbjct: 760 FRLMREVYGIRPGAEHFTCMVDLYGRAGRLN 790
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 79 GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV 138
G+ L+++YAK +L+++ +F ++ + ++F W +I G A G + + L +F +M + V
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383
Query: 139 EPNGVTFISVLSACT 153
PN T VL +C+
Sbjct: 384 CPNQFTLSIVLKSCS 398
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 213/332 (64%), Gaps = 5/332 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R I+SWT +I+ Y++ + +ALD F EM+ +GI PD+ ++ +VL ACA LGAL+ G
Sbjct: 187 MPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH++ + G I +AL++MY KCG +D++ +F ++R +++ W+++I GLA H
Sbjct: 247 KWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANH 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+A+F+RM N++PNG+TF+ +LSAC HAG EEG F +M + I PE+EH
Sbjct: 307 GKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG +VDLL +AG L AL+++ +P++ IWG+LL C+ H N+E+A IA+ L LE
Sbjct: 367 YGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELE 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+++G LL N+YA++ +W +V+++R ++ + K+ PG S IE+ +F + D S
Sbjct: 427 PDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRM-KKTPGCSLIEVNNVAQEFVSGDDS 485
Query: 301 HPASDEIYSSLSKL----DEQLKLASYVPELE 328
P S EI+ L L D + +PE E
Sbjct: 486 KPYSKEIFWLLELLAFHQDMDKHILEIIPENE 517
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 48/286 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEM----KNSGIS-----PDQVTMATVLSACAHLGALDL 59
+ MI + N + +D + +M +NS S PD+ T V+ ACA LG +L
Sbjct: 54 YNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNL 113
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+++H + G + +AL+DMY KC +L + +F ++ E+ WN II G
Sbjct: 114 GKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVR 173
Query: 120 HGFAHEALAMFDRMIYEN-------------------------------VEPNGVTFISV 148
G A A+FD M +EP+ + ISV
Sbjct: 174 LGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISV 233
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L AC G +E G +++ M C + + ++++ +K G ++ A +L + +
Sbjct: 234 LPACAKLGALETG--KWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGR 291
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+ + W ++GG H + A IA+ E M ++PN + LL
Sbjct: 292 -DVISWSTMIGGLANHGKVREA-IAIFERMKQTNIKPNGITFVGLL 335
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 203/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + WT MI +N + AL+ F M+ + P++VT+ VLSAC+ LGAL LGR +
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWV 271
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y+ + +++ ++G AL++MY++CG +D + VF +++EKN+ +NS+I G A+HG +
Sbjct: 272 RSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKS 331
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ +F +I + P+ VTF+ VL+AC+H GL E G F SM Y I P++EHYGC
Sbjct: 332 VEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGC 391
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL + G LE+A IR K P+ V+ GALL CK+H NLE+A L+ + +
Sbjct: 392 MVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNAD 451
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N Y+ +W E ++R M+E GIEK PG S IE+ ++++F D HP
Sbjct: 452 SGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKE-PGCSSIEVNNEIHEFLLGDLRHPQ 510
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
++IY L +L++ L+L Y P E +L
Sbjct: 511 KEKIYKKLEELNQILRLEGYTPATEVVL 538
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 33/234 (14%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+++CY + + + + +M NS + PD + +VL AC AL GRE+H V+++G
Sbjct: 106 VLSCY-----YTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLG 160
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE------------------KNLFCWNSI 113
+ I L+++Y KCG+ + + VF ++ E K+ CW ++
Sbjct: 161 LSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAM 220
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCG 171
I+GL +G ++ AL +F M E+V PN VT + VLSAC+ G ++ GR R ++
Sbjct: 221 IDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKH-- 278
Query: 172 YSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
E+ H+ G ++++ S+ G +++A + K + N + + +++ G LH
Sbjct: 279 ---RIELNHFVGGALINMYSRCGDIDEAQRVFEQMK-EKNVITYNSMIMGFALH 328
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++I++ +MI ++ + + EA++ F + G +P VT VL+AC+H G +LG
Sbjct: 310 MKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELG 369
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
EI H G + + +VD+ + G L+ +
Sbjct: 370 FEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEA 405
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 34 NSGISPDQVT-----MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
NSG P ++L C H + I+ +++ D ++ L+ + +
Sbjct: 20 NSGTKPKNTPNRRRHFISLLQNCKHNNQIP---PIYAKIIRNHHHQDPFVVFELLRVCSN 76
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
S+ + +F + N++ + ++I+GL + + + + ++ +MI ++ P+ SV
Sbjct: 77 LNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSV 136
Query: 149 LSACTHAGLVEEGRRRF-----LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
L AC ++EGR L ++ SI + +++L K G EDA
Sbjct: 137 LKACGCHLALKEGREVHSQVLKLGLSSNRSIRIK------LIELYGKCGAFEDA 184
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 208/318 (65%), Gaps = 2/318 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI+SWT++I+ Q +EAL+ F +M++SGI PD + + +VLSACA LGALD GR +
Sbjct: 196 KDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWV 255
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ + D+ IG+A+VDMYAKCG ++ S+ +F + KN+ WN+++ GLA+HG A
Sbjct: 256 HEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHA 315
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITPEVEHYG 182
++ L +F+ M+ + PN VTF+++L+AC H GLV EGR+ F M Y++ P +EHYG
Sbjct: 316 YKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYG 375
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +A LL++ALEL ++ P+ I GALL CK + N E+ ++ + L+ +
Sbjct: 376 CMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSH 435
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+SG LL N++A RW +VT+IR MKE GI K+ PGS+ IE++ K ++F D HP
Sbjct: 436 DSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGI-KKPPGSTVIELDGKAHEFIVGDTRHP 494
Query: 303 ASDEIYSSLSKLDEQLKL 320
I L L +Q+ L
Sbjct: 495 QDKRIRLLLKILSDQIFL 512
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT +I+ Y + F EA+ F M + P+ T +VL AC G L +G
Sbjct: 95 MLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVG 151
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + F + + + +AL+DMY KCG L + VF +L EK++ W SII GL
Sbjct: 152 KGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQC 211
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL +F M +EP+G+ SVLSAC G ++ GR + +I +++
Sbjct: 212 NCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHID-RKAIKWDIQI 270
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
MVD+ +K G +E ++++ + N + W ALL G +H
Sbjct: 271 GTAMVDMYAKCGCIEMSMQIFNGMPHK-NVLTWNALLNGLAMH 312
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 7/212 (3%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +++ Y+ + + A + + G PD T VL +CA + GR++H ++
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF ++Y+ ++LV Y+ C + VF ++ +++ W +I G G EA+
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
+F RM +VEPN TF+SVL AC G + G+ LS + + EV + ++D+
Sbjct: 122 LFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSN--ALMDM 176
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
K G L A ++ + + V W +++ G
Sbjct: 177 YVKCGCLPGAKQVFDELA-EKDIVSWTSIISG 207
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W ++ + + + L+ F EM G+ P++VT +L+AC H G ++ G
Sbjct: 294 MPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEG 353
Query: 61 RE 62
R+
Sbjct: 354 RQ 355
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 203/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT+++ C QN + EA+D F M++ G+ P+ VT+ VL A A++ AL GR H
Sbjct: 253 NVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAH 312
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ GF DVY+GSALVDMYAKCG + +F + +N+ WN++I G A+HG A
Sbjct: 313 CFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAA 372
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+ +F M +P+ VTF VL AC+ AGL EEGRR F M G+ I+P +EHY CM
Sbjct: 373 NAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACM 432
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LL ++G L++A +LI F+P++ IWG+LLG C+++ N+ +A +A +L LEP N+
Sbjct: 433 VTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNA 492
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W V ++R MK +G++K G SWIE++ KV+ A D SHP
Sbjct: 493 GNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKE-KGCSWIEIKNKVHMLLAGDNSHPMM 551
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
I L++L ++ + P + +L
Sbjct: 552 TAITEKLNQLTIEMNRLGFAPSRDFVL 578
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 89/164 (54%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++I+W +++ +++ + +A+ A M + G PD ++ LSA + + +G+++H
Sbjct: 117 NVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVH 176
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ G +D + +AL+DMY KCG D + VF + ++ N+++ GL+ +
Sbjct: 177 GYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVS 236
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
EAL +F I VE N V++ S+++ C G E F +M
Sbjct: 237 EALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTM 280
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
++ +++ PD + + L +C A L R +H + G D ++ S+L+ Y +
Sbjct: 8 YHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIR 64
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
G+ + VF ++ EKN+ W+++I G + G A A + ++M VEPN +T+ +
Sbjct: 65 LGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGL 124
Query: 149 LSACTHAG 156
+S +G
Sbjct: 125 VSGLNRSG 132
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R+++SW MI Y+ + A+ F M+ PD VT VL AC+ G + G
Sbjct: 350 MPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEG 409
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R + MQ G I + + +V + + G LD + + ++ E + W S++
Sbjct: 410 RR-YFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSC 468
Query: 118 AVHG 121
V+G
Sbjct: 469 RVYG 472
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 185/286 (64%), Gaps = 1/286 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW++MI+ YSQ F +AL+ F +M+ + + PD + +A+V+S+CAHLGALDLG
Sbjct: 280 IPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 339
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV + D + ++L+DMY KCGS +L VF +++EK+ WNSII GLA +
Sbjct: 340 KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANN 399
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF E+L +F M+ E PNGVTF+ VL AC +A LVEEG F SM YS+ P+++H
Sbjct: 400 GFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH 459
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AG LE AL I P+ V+W LLG C H ++ IA I +L LE
Sbjct: 460 YGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELE 519
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
P+NSG TLL N YA RW+E +R M + + K PG S +E
Sbjct: 520 PSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKS-PGCSAVE 564
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 45/256 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW ++I YSQ +F++ L F M+N G+ D+VTM V+SAC LG +
Sbjct: 148 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA 207
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR----------------- 103
+ Y+ ++DVY+G+ LVD + + G L + VFF ++
Sbjct: 208 DYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKG 267
Query: 104 --------------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+K+L W+S+I G + +AL +F +M V+P+ + SV+
Sbjct: 268 QDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVV 327
Query: 150 SACTHAGLVEEGR------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
S+C H G ++ G+ RR +I + ++D+ K G ++AL++ +
Sbjct: 328 SSCAHLGALDLGKWVHEYVRR-------NNIKADTIMENSLIDMYMKCGSAKEALQVFKE 380
Query: 204 SKFQPNAVIWGALLGG 219
K + + + W +++ G
Sbjct: 381 MK-EKDTLSWNSIIIG 395
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 113/213 (53%), Gaps = 6/213 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I +Q+ +A+ + + + G+ PD +T +L ACA + AL+ G ++H ++
Sbjct: 55 WNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHIT 114
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G D+++ ++L+ +YA CG+L + VF ++ K++ WNS+I G + + LA
Sbjct: 115 KLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILA 174
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAG--LVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+F M E V+ + VT I V+SACT G + + R++ Y I +V +VD
Sbjct: 175 LFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIE---DYCIEVDVYLGNTLVD 231
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ G L+ A ++ + K + N V A++
Sbjct: 232 YFGRRGQLQSAEKVFFNMKVR-NIVTMNAMIAA 263
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++ F WN +I GLA +A+A + + + P+ +TF +L AC
Sbjct: 43 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 102
Query: 158 VEEGRR 163
+ EG +
Sbjct: 103 LNEGEQ 108
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 208/333 (62%), Gaps = 7/333 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI SW ++++ + Q L + M +GI PD VT+ TVL AC+HL AL G
Sbjct: 298 MREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHG 357
Query: 61 REIHLYVM-----QIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
REIH Y++ + G DID V + +A++DMYAKCGS+ + LVF ++ K++ WN +I
Sbjct: 358 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMI 417
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G +HG+ +EAL MF RM ++P+ VTF+ VLSAC+HAG V +GR + M Y +
Sbjct: 418 MGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDV 477
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +EHY C++D+L +AG L++A EL + + N V+W ALL C+LH++ +A +A
Sbjct: 478 APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 537
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+ LEP + G L+ N+Y V R+ EV ++R M++ + ++ PG SWIE++ V+ F
Sbjct: 538 RVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNV-RKTPGCSWIELKNGVHVF 596
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
++D++HP + IY+ L+ L +L YVP++
Sbjct: 597 VSADRAHPEAXSIYAGLNSLTARLXEHGYVPDV 629
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 152/342 (44%), Gaps = 47/342 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++ W M+ Y+Q QF L+ F M + + P + T+ LS A +G L+ G
Sbjct: 197 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH + M++G+D V + ++L+DMY KC ++ +L +F +REK++F WNSI+
Sbjct: 257 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQC 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L + DRM+ ++P+ VT +VL AC+H + GR GY I +
Sbjct: 317 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGRE-----IHGYMIVSGLGK 371
Query: 181 YG----------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
G ++D+ +K G + DA L+ + W ++ G +H
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMH------- 423
Query: 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
GY L M+ SR EV + +G+ C + ++ R
Sbjct: 424 --------------GYGNEALEMF---SRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 466
Query: 291 V-------YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
Y A + + + ++ +LDE +LA +P
Sbjct: 467 FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 508
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 6/198 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ ++ +I+ + N E + + +M+N G+ PD+ T + AC L L++ ++IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKAC--LDVLEI-KKIH 159
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + G ++DV+IGSALV+ Y K G ++ + + F +L +++ WN+++ G A G
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGC 183
L F RM E+V P+ T LS G + GR +M GY V +
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSN--S 277
Query: 184 MVDLLSKAGLLEDALELI 201
++D+ K +EDALE+
Sbjct: 278 LIDMYGKCKCIEDALEIF 295
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
E N+F +N+II G +GF E + +M E V P+ TF + AC + +
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI----K 156
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + + +V +V+ K GL+E A + + V+W A++ G
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNG 211
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 212/325 (65%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ARD+I++ +MIT Y + + R+AL F +++ G+ D T+ ++L+ACA LGAL G
Sbjct: 328 MGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQG 387
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + Q + DVY+ +ALVDMY KCG +D + VF ++ E+++ W+++I GLA +
Sbjct: 388 RALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFN 447
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F +M + +P VT+I+VL+AC+H+ L+ EGR+ F M + + P++EH
Sbjct: 448 GMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEH 507
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL+++GLL++A+ L+++ QPNAVIW ++L C++H+N+++A A L+ L
Sbjct: 508 YGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLA 567
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P L N+Y + +W E +IR+ M+E G+ K+ G S I + +V++F +D+S
Sbjct: 568 PEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGV-KKTAGYSSITVAGQVHKFVVNDQS 626
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + EI + + ++ +LK A Y P
Sbjct: 627 HPWTLEIITMMEEIARRLKSAGYSP 651
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 129/272 (47%), Gaps = 37/272 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R+++SWT++I YS+ + +A+ FN M + G+ PD+V + LSAC+ L L+ GR
Sbjct: 196 PERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGR 255
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+HL V + + + L+DMYAKCG + ++ VF + R + WN II+G
Sbjct: 256 LLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKL 315
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ++FD+M +V +TF S+++ H+G + + + F+ ++
Sbjct: 316 GHVDIARSLFDQMGARDV----ITFNSMITGYIHSGRLRDALQLFM----------QLRR 361
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+G D + LL L GAL G LH ++E + + ++
Sbjct: 362 HGMRADNFTVVSLLTACASL-------------GALPQGRALHASIEQRIVEEDVYLV-- 406
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
T L++MY + R E T + M E
Sbjct: 407 -------TALVDMYMKCGRVDEATAVFHRMGE 431
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D + + ++ + G LD + + + E+N+ W S+I G + G +A+ F+ M+
Sbjct: 168 DAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCML 227
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDL 187
+ VEP+ V I LSAC+ +E GR ++ + MT +T ++D+
Sbjct: 228 SDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVT--------LIDM 279
Query: 188 LSKAGLLEDALELI----RSSKFQPNAVIWGALLGG-CKL 222
+K G + A + R K +P W ++ G CKL
Sbjct: 280 YAKCGDIAQAQAVFDAVGRGQKPEP----WNVIIDGYCKL 315
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
MP ++I+SW T+I+ Q F EA++ F M++ G++ D VTM ++ SAC HLGALDL
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ I+ Y+ + G +DV +G+ LVDM+++CG + ++ +F L +++ W + I +A+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A A+ +FD MI + ++P+GV F+ L+AC+H GLV++G+ F SM + ++PE
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLLE+A++LI +PN VIW +LL C++ N+E+A A ++ +L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P +G LL N+YA RW ++ K+R++MKE G+ K PG+S I++ K ++F + D+
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP-PGTSSIQIRGKTHEFTSGDE 727
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP I + L ++ ++ +VP+L +L
Sbjct: 728 SHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I Y+ + EA+ F M NSGISPD+ T LSACA A G +IH ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G+ D+++ ++LV YA+CG LD + VF ++ E+N+ W S+I G A FA +A+
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 129 MFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
+F RM+ E V PN VT + V+SAC +E G + +
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M R+++SWT+MI Y++ ++A+D F M ++ ++P+ VTM V+SACA L L+
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +++ ++ G +++ + SALVDMY KC ++D + +F + NL N++
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
G EAL +F+ M+ V P+ ++ +S +S+C+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 33/224 (14%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
M + Y + REAL FN M +SG+ PD+++M + +S+C+ L + G+ H YV++ G
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNG 367
Query: 72 FDIDVYIGSALVDMYAKC-------------------------------GSLDRSLLVFF 100
F+ I +AL+DMY KC G +D + F
Sbjct: 368 FESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFE 427
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVE 159
+ EKN+ WN+II GL EA+ +F M E V +GVT +S+ SAC H G ++
Sbjct: 428 TMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALD 487
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
+ + + I +V +VD+ S+ G E A+ + S
Sbjct: 488 LAKWIYYYIE-KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 530
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 53/256 (20%)
Query: 33 KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
K S ++ + T AT S+ + +D + H + + G D DV + LV + G+
Sbjct: 22 KPSLLNQSKCTKATP-SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGT- 79
Query: 93 DRSLLVFFKLREKN------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
R L F K +N F +NS+I G A G +EA+ +F RM+ + P+ TF
Sbjct: 80 -RESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFP 138
Query: 147 SVLSACT-----------HAGLVEEGRRRFL----SMTCGYSITPEVEHYGCMVDLLSKA 191
LSAC H +V+ G + L S+ Y+ E++ + D +S+
Sbjct: 139 FGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSER 198
Query: 192 GLL---------------EDALEL----IRSSKFQPNAVIWGALLGGCKLHRNLEIAH-- 230
++ +DA++L +R + PN+V ++ C +LE
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKV 258
Query: 231 --------IAVNELMI 238
I VN+LM+
Sbjct: 259 YAFIRNSGIEVNDLMV 274
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 205/340 (60%), Gaps = 19/340 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM----------------KNSG-ISPDQVTMATV 47
+++SW+ +I ++Q E LD F EM K G + P+ T++
Sbjct: 113 NVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCA 172
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
L ACA L AL LGR+IH Y+++ FD +Y+ + L+DMYAK G +D + VF L++KN
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
W S++ G +HG EAL +FD M ++P+GVT + VL AC+H+G++++G F
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
SM+ + + P EHY CMVDLL +AG L +A+ELI + +P++++W ALL GC++H N+
Sbjct: 293 SMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANV 352
Query: 227 EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
E+ A +L+ L N G TLL N+YA RW +V ++R MK GI KR PG SW++
Sbjct: 353 ELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKR-PGCSWVQ 411
Query: 287 MERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
++ F +DK+HP S +IY L L +++K+ YVPE
Sbjct: 412 GKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPE 451
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 84/135 (62%)
Query: 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+ PD V++ VL ACA +GA G+ +H ++ G D+++G+ALVDMYAKCG +D +
Sbjct: 9 MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF +++EK++ WN+++ G + G +AL +F++M EN+E N V++ +V++A G
Sbjct: 69 KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128
Query: 157 LVEEGRRRFLSMTCG 171
L E F M G
Sbjct: 129 LGCETLDVFREMQHG 143
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 8/125 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++ +SWT+++T Y + + +EAL+ F+EM+ G+ PD VT+ VL AC+H G +D G
Sbjct: 228 LKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQG 287
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIE 115
E + + + V G + +VD+ + G L+ ++ + ++ E + W +++
Sbjct: 288 IE---FFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLS 344
Query: 116 GLAVH 120
G +H
Sbjct: 345 GCRIH 349
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 206/334 (61%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R II+W ++I+ Y QN +E++ F+ M SG PD T+ ++LS+C+ LGALD G
Sbjct: 186 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 245
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y GFD++V +G++L++MY +CG++ ++ VF ++E+N+ W ++I G +H
Sbjct: 246 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 305
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +A+ +F M PN +TF++VLSAC H+GL+++GRR F SM Y + P VEH
Sbjct: 306 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEH 365
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKF---QPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
CMVD+ +AGLL DA + I+ KF +P +W ++LG C++HRN ++ ++
Sbjct: 366 NVCMVDMFGRAGLLNDAYQFIK--KFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVL 423
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
+EP N G+ +L N+YA R V +R M ++K+ G S IE+ RK Y F+
Sbjct: 424 SVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQV-GYSTIEINRKTYLFSMG 482
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DKSHP ++ IY L +L + + YVP E+++
Sbjct: 483 DKSHPQTNTIYRYLDELMCRCSESGYVPAPESLM 516
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 20/204 (9%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
+ M SG T +V+ ACA L AL LG+EIH +VM G+ D+Y+ +AL+ +YAK
Sbjct: 113 YRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAK 172
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+ + VF + ++ + WNS+I G +G E++ +F M+ +P+ T +S+
Sbjct: 173 ASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSL 232
Query: 149 LSACTHAGLVE---------EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
LS+C+ G ++ +G L++ G S ++++ ++ G + A E
Sbjct: 233 LSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS----------LINMYTRCGNVSKARE 282
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ S K + N V W A++ G +H
Sbjct: 283 VFDSMK-ERNVVTWTAMISGYGMH 305
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ G + + L+ + GS+ + +F + + F ++S+++ +
Sbjct: 44 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
GF+ + + + RM++ + TF SV+ AC + G+ M CGY V+
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ 163
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
++ L +KA ++ A ++ + Q + W +L+ G L I + LM+
Sbjct: 164 --AALIALYAKASDMKVAKKVFDAMP-QRTIIAWNSLISGYD-QNGLPQESIGLFHLMME 219
Query: 239 --LEPNNSGYCTLL 250
+P+++ +LL
Sbjct: 220 SGFQPDSATIVSLL 233
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/308 (43%), Positives = 199/308 (64%), Gaps = 2/308 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++ + W+ MI YSQN + +E+L F+EM G+ P + T+ +VLSAC L L+LG
Sbjct: 451 PRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGD 510
Query: 62 EIHLY-VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y V+ + V + +A+VDMYAKCGS+D + VF + E+NL WN++I G A +
Sbjct: 511 WIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAAN 570
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +FD+M EPN +TF+S+L+AC+H GL+ EGR F +M Y I PE H
Sbjct: 571 GRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGH 630
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + GLLE+A +LI + QP WGALL C++H N+E+A ++ + L+ L+
Sbjct: 631 YACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLD 690
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N A +W++V ++R MK+ G+ K+ PG S IE++ +F +D+S
Sbjct: 691 PEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGV-KKIPGYSLIEIDGGFVEFLVADES 749
Query: 301 HPASDEIY 308
HP S+EIY
Sbjct: 750 HPQSEEIY 757
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 133/280 (47%), Gaps = 34/280 (12%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++WTTMI Y+ + EA++ F M S + P++VT+ V+SAC+ +G L++G+ +
Sbjct: 321 KDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRV 380
Query: 64 H-----------------LYVMQIGFDI--------------DVYIGSALVDMYAKCGSL 92
H L M + D DVY +++V+ YAKCG L
Sbjct: 381 HEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDL 440
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ + F + KN CW+++I G + + E+L +F M+ V P T +SVLSAC
Sbjct: 441 ESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSAC 500
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ G G I V +VD+ +K G ++ A E+ S+ + N +
Sbjct: 501 GQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVF-STMPERNLIS 559
Query: 213 WGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLL 250
W ++ G + + A +++ M EPNN + +LL
Sbjct: 560 WNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLL 599
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 31/241 (12%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TMI Y ++ A F M + D + L AC + G ++ V
Sbjct: 225 WNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVW 284
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GFD ++ + + L+ YA+ G L + VF + +K++ W ++I+G A H + EA+
Sbjct: 285 KMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAME 344
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF-----LSMTCGYSI--------- 174
+F+ M+ +VEPN VT I+V+SAC+ G +E G+R +M C S+
Sbjct: 345 VFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYV 404
Query: 175 ----------------TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
T +V + MV+ +K G LE A + + NAV W A++
Sbjct: 405 KCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTP-RKNAVCWSAMIA 463
Query: 219 G 219
G
Sbjct: 464 G 464
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 19/234 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISW TMI Y+ N + ++A++ F++M+N G P+ +T ++L+AC+H G + G
Sbjct: 552 MPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEG 611
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREKNL-FCWNSIIEGL 117
RE + M+ + I G + +VD+ + G L+ + + + + W +++
Sbjct: 612 RE-YFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNAC 670
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-------RFLSMTC 170
+HG A ++ + E +G+ ++ + + C + + RR + +
Sbjct: 671 RMHGNVELARLSAHNLLRLDPEDSGI-YVLLANTCANDRKWSDVRRVRSLMKDKGVKKIP 729
Query: 171 GYSITPEVEHYGCMVDLL--SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
GYS+ +E G V+ L ++ + + + + W + GGCKL
Sbjct: 730 GYSL---IEIDGGFVEFLVADESHPQSEEIYKLECDNLSSKKLTW--VSGGCKL 778
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A G L + +F ++ + N F WN++I G A + F M VE + +F+
Sbjct: 202 AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFV 261
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
L AC V EG + + E+ ++ ++ GLL++A ++ S
Sbjct: 262 FALKACQQFETVFEGESVY-CVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESS- 319
Query: 207 QPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL---EPN 242
+ V W ++ G H E A + V ELM+L EPN
Sbjct: 320 DKDVVTWTTMIDGYAAHDCSEEA-MEVFELMLLSHVEPN 357
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 205/328 (62%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W+ M++ YS+ EAL F EM+ G+ PD+VTM +V+SACA GALDLG+ +
Sbjct: 191 KNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWV 250
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + G +D+ + +AL+DMYAKCG ++R+ VF + EK+ W+++I G A+HG
Sbjct: 251 HAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLV 310
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F RM+ V PN VTFI VLSAC H+GLVE+G RR+ S+ I P +E+YGC
Sbjct: 311 EDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG-RRYWSIMQNLGIKPSMENYGC 369
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++GLL+DA + PN+VIW LL CK ++IA A L+ LEP+N
Sbjct: 370 MVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHN 429
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N+YA S+W V+ +R MK + G S IE+ +++F SD SHP
Sbjct: 430 PENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTA-IAGRSSIEINGHLHEFVVSDDSHPE 488
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
EI L ++ ++++ A + P A+L
Sbjct: 489 IREIRLVLREMADRVRRAGHKPWTAAVL 516
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 6/230 (2%)
Query: 25 ALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
AL + M +G P+ T+A L ACA + A GR++H ++ G Y+ + L+
Sbjct: 109 ALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLL 168
Query: 84 DMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
++YAKC + + VF + +KNL W++++ G + G +EAL +F M VEP+
Sbjct: 169 NLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDE 228
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
VT +SV+SAC AG ++ G+ + IT ++E ++D+ +K GL+E A +
Sbjct: 229 VTMVSVISACAKAGALDLGKWVHAYID-RKGITVDLELSTALIDMYAKCGLIERARGVF- 286
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLL 250
+ + + W A++ G +H +E A + ++ L+ PNN + +L
Sbjct: 287 DAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVL 336
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +W+ MI ++ + +AL F+ M + P+ VT VLSACAH G ++ G
Sbjct: 289 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
R + +G + +VD+ + G LD
Sbjct: 349 RRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 381
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG 156
+F ++ + FC+NS+I L G A ALA++ RM+ + PN T L AC
Sbjct: 82 LFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140
Query: 157 LVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
EGR+ ++ G + + V+ +++L +K + A + N V W A
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQ--TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198
Query: 216 LLGG 219
++ G
Sbjct: 199 MVSG 202
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 210/326 (64%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+ + WT+MI Y+Q+ F+EA++ F EM+ G + D T+A VLSAC H GAL G
Sbjct: 292 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 351
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IHLY + ++D+ +AL+ MY+KCG + ++L +F L + ++F W+++I GLA++
Sbjct: 352 RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMN 411
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G + +AL +F +M + ++ PN +TF+ VL AC H G V++G F +MT Y++TP +E
Sbjct: 412 GESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIE 471
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +A LL +A + IR+ QP+ VIW +LL C+ H N+E+A A ++ L
Sbjct: 472 HYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEEL 531
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP G LL N+YA SRW +V ++R M I+K+ PG S++E++ V++ +D+
Sbjct: 532 EPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQ-PGCSFVEIDGLVHELFVADR 590
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
SHP IY ++ +++ L+ + P
Sbjct: 591 SHPEMGAIYETMISINKALQSKGFDP 616
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 7/227 (3%)
Query: 1 MPA--RDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGAL 57
+PA RD++SW +MI+ Y Q+ ++ AL F E+ G +SPD+VT+ + LS C LG L
Sbjct: 188 LPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLL 247
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
DLG++IH GF +DV++GS+L+DMY+KCG ++ + VF ++ +N CW S+I G
Sbjct: 248 DLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGY 307
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-SITP 176
A EA+ +F M + T VLSAC H G + +G R++ + C SI
Sbjct: 308 AQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG--RWIHLYCERNSIEM 365
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ ++ + SK G ++ ALE+ QP+ W A++ G ++
Sbjct: 366 DLNARNALIGMYSKCGDIQKALEIFHGLT-QPDIFSWSAVISGLAMN 411
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 5/218 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW M YS++ E + +N M +G PD + VL ACA L L GREIH
Sbjct: 91 NVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIH 150
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGLAVHGF 122
+++G +DV++ +AL+ ++ CG+++ + VF L +++ WNS+I G
Sbjct: 151 SSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHR 210
Query: 123 AHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
AL +F ++ + ++ P+ VT +S LS C GL++ G ++ + G +V
Sbjct: 211 YELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLG-KKIHGLFTGSGFVLDVFVG 269
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ SK G +EDA ++ + N V W +++ G
Sbjct: 270 SSLIDMYSKCGQIEDARKVFDRIPHR-NTVCWTSMIAG 306
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 2/144 (1%)
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
S +FF++ + N+F WN + + F E +A+++ M+ P+ +F VL AC
Sbjct: 80 SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNAVIW 213
L+ +G R S T + +V ++ S G +E A + + V W
Sbjct: 140 LSLLHKG-REIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSW 198
Query: 214 GALLGGCKLHRNLEIAHIAVNELM 237
+++ G E+A EL+
Sbjct: 199 NSMISGYLQSHRYELALKVFWELL 222
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 204/329 (62%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++SW +++ ++ N + E L F E + + PD T+ +VL+ACA +GAL LGR +
Sbjct: 186 RNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRV 245
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGF 122
H++ ++G + ++G+AL+D+YAKCG ++ + VF ++ + + W S+I GLA +GF
Sbjct: 246 HVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGF 305
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+AL +F M E + P +T + VL AC+H GLV++G R F M Y I P +EH G
Sbjct: 306 GKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLG 365
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG +E+A I + +PNAV+W LLG C +H+ LE+ A L+ L+P
Sbjct: 366 CMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPG 425
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+SG LL N+YA V RWA+ +R M G+ K PG S +E+ VY+F D+SHP
Sbjct: 426 HSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKN-PGHSLVELRNSVYEFVMGDRSHP 484
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
SD+IY +L+++ E+L+ YVP +L
Sbjct: 485 ESDQIYQTLAEIAERLRCQGYVPRTSNVL 513
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S T++ + + R AL A + + + PD T +L AC L AL G
Sbjct: 83 LPDPDPFSLNTVLRIAASSAHPRIAL-ALHRRRLA--PPDTHTYPPLLQACTRLLALREG 139
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
+H + G V++ ++LV Y CG + + VF + E+NL WNS++ G A
Sbjct: 140 ESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFA 199
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPE 177
+G +E L +F + ++ P+G T +SVL+AC G + GRR + G
Sbjct: 200 ANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSH 259
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V + ++DL +K G +EDA ++ V W +L+ G
Sbjct: 260 VGN--ALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVG 299
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
AR ++SWT++I + N ++AL+ F M+ + P +TM VL AC+H G +D G
Sbjct: 287 ARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFR 346
Query: 63 IHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
+ MQ + I I +VD+ + G ++ + + E N W +++ A+
Sbjct: 347 -YFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAM 405
Query: 120 H 120
H
Sbjct: 406 H 406
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 201/318 (63%), Gaps = 5/318 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP RD+ SW ++ +QN F EA+ F M N I P++VT+ VLSACA G L L
Sbjct: 219 MPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQL 278
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ IH + + DV++ ++LVD+Y KCG+L+ + VF +K+L WNS+I A+
Sbjct: 279 AKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFAL 338
Query: 120 HGFAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
HG + EA+A+F+ M+ N+ +P+ +TFI +L+ACTH GLV +GR F MT + I P
Sbjct: 339 HGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEP 398
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+EHYGC++DLL +AG ++ALE++ + K + + IWG+LL CK+H +L++A +AV L
Sbjct: 399 RIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNL 458
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ L PNN GY ++ N+Y E+ W E + R +K K PG S IE++ +V+QF +
Sbjct: 459 VALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKP-PGWSRIEIDNEVHQFYS 517
Query: 297 SDKSHPASDEIYSSLSKL 314
DKSHP ++EIY L L
Sbjct: 518 LDKSHPETEEIYMILDSL 535
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 115/271 (42%), Gaps = 38/271 (14%)
Query: 9 WTTMITCYSQNKQFR--EALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHL 65
+ ++T YS + A F M N + P+ VL + +L + +H
Sbjct: 91 YAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHT 150
Query: 66 YVMQIGFDIDVYIGSALVDMYA--------------------------------KCGSLD 93
++ + GF + V + +AL+ YA + G +
Sbjct: 151 HLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIS 210
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSAC 152
++ +F + E+++ WN+I+ +G EA+++F RMI E ++ PN VT + VLSAC
Sbjct: 211 NAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSAC 270
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
G ++ + + ++ +V +VDL K G LE+A + + + + +
Sbjct: 271 AQTGTLQLA-KGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMAS-KKSLTA 328
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
W +++ LH E A E+M L N+
Sbjct: 329 WNSMINCFALHGRSEEAIAVFEEMMKLNIND 359
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 210/319 (65%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW +MI+ Y + +F EA++ F+ M+ GI P + TM ++L+ACA LGAL G
Sbjct: 189 MLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQG 248
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+++ F ++ + +A++DMY+KCGS+D++L VF +K L CWNS+I GLA+
Sbjct: 249 EWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMS 308
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EA+ +F ++ N++P+ V+FI VL+AC HAG+V+ + FL M+ Y I P ++H
Sbjct: 309 GRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKH 368
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L +AGLLE+A ELI+S P+A+IWG+LL C+ + N+E+A A + L+
Sbjct: 369 YSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELD 428
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN S LL N+YA + + E + R+++KE ++K PG S IE+ +V++F A +
Sbjct: 429 PNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKE-PGCSLIEVNGEVHEFVAGGRL 487
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP S +IY +L L LK
Sbjct: 488 HPRSKDIYHALDDLGLTLK 506
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 39/250 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGRE 62
++ W T+I +SQ+ A+ F +M + P ++T +V A A LG G +
Sbjct: 59 NLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQ 118
Query: 63 IHLYVMQIGFDIDVYIGSALVDMY-------------------------------AKCGS 91
+H V+++G + D +I + +++MY AKCG
Sbjct: 119 LHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGE 178
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+D+S +F K+ +N WNS+I G G EA+ +F RM E ++P+ T +S+L+A
Sbjct: 179 IDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNA 238
Query: 152 CTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
C G + +G ++ + +++ V ++D+ SK G ++ AL++ +S+ +
Sbjct: 239 CACLGALRQGEWIHDYI-VKNNFALNSIV--ITAIIDMYSKCGSIDKALQVFKSAP-KKG 294
Query: 210 AVIWGALLGG 219
W +L+ G
Sbjct: 295 LSCWNSLILG 304
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDM-YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++IH +++ G D S ++ + G ++ + LVF ++R NLF WN+II G +
Sbjct: 13 QKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQ 72
Query: 120 HGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEG 161
H A+++F M++ + +P +T+ SV A GL EG
Sbjct: 73 SSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEG 116
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 202/326 (61%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI C+S +AL + M N G+ D T+ +LS+CAH+ AL++G
Sbjct: 168 MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG 227
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H I + V++ +AL+DMYAKCGSL+ ++ VF +R++++ WNS+I G VH
Sbjct: 228 VMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVH 287
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA++ F +M+ V PN +TF+ +L C+H GLV+EG F M+ + +TP V+H
Sbjct: 288 GHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKH 347
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG LE++LE+I +S + V+W LLG CK+HRNLE+ +A+ +L+ LE
Sbjct: 348 YGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N+G L+ ++Y+ + +R ++ ++ PG SWIE+ +V++F DK
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQT-VPGWSWIEIGDQVHKFVVDDKM 466
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S IYS L ++ + LA Y PE
Sbjct: 467 HPESAVIYSELGEVINRAILAGYKPE 492
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 107/216 (49%), Gaps = 3/216 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLYV 67
W +I +S + ++ +N M S +S PD T L +C + ++ EIH V
Sbjct: 74 WNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSV 133
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ GF D + ++LV Y+ GS++ + VF ++ ++L WN +I + G ++AL
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+M+ RM E V + T +++LS+C H + G + C V ++D+
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG-VMLHRIACDIRCESCVFVSNALIDM 252
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+K G LE+A+ + + + + + W +++ G +H
Sbjct: 253 YAKCGSLENAIGVFNGMR-KRDVLTWNSMIIGYGVH 287
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 204/325 (62%), Gaps = 2/325 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW+ +I ++ + +EAL+ F M+++ I + VT++TVLS CA L AL LGREIH
Sbjct: 282 NVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIH 341
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V++ ++ +G+ LV+MYAKCG L ++F K K+L WNS+I G +HG
Sbjct: 342 GHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGM 401
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
AL FD+MI +P+GVTF++VLS+C+H+GLV EGRR F M Y I P++EHY CM
Sbjct: 402 NALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACM 461
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL-EPNN 243
VDLL +AGLL +A E++++ PNA +WGALL C++H N EIA + L L
Sbjct: 462 VDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRET 521
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+G LL N+YA RW + ++R + K G++K PG SWI++E+ VY F+A +
Sbjct: 522 TGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKN-PGQSWIKVEKNVYTFSAGNNMQRG 580
Query: 304 SDEIYSSLSKLDEQLKLASYVPELE 328
++I+ L +L Q++ V + +
Sbjct: 581 FEQIFEILEELTFQMEREGTVHDTD 605
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 42/259 (16%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++WT++I+ Y+++ EA++ F M+ G+ +A V+S CA LGA + IH
Sbjct: 142 NLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIH 201
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y ++ GF+ ++ SAL+ +Y K G ++ + +F +++ K+L WN++I A G
Sbjct: 202 EYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCD 261
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F ++ P + P V + +
Sbjct: 262 EALEIFSQLERSGDCPR--------------------------------LRPNVVSWSAI 289
Query: 185 VDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGC----KLHRNLEIAHIAVNELM 237
+D + G ++ALEL R +K NAV +L C LH EI V +M
Sbjct: 290 IDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVM 349
Query: 238 ILEPNNSGYCTLLLNMYAE 256
+ NN L+NMYA+
Sbjct: 350 V---NNILVGNGLVNMYAK 365
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 78/134 (58%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M+ G D T V+ ACA++G+ LG+ IH +V+++GF +++G+ L+ MYAK G
Sbjct: 33 MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+ + +F ++ ++ WN+++ A + + AL +F RM E +EPN VT+ S++S+
Sbjct: 93 MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152
Query: 152 CTHAGLVEEGRRRF 165
+G EE F
Sbjct: 153 YARSGWHEEAMELF 166
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW +MIT Y + AL+ F++M G PD VT VLS+C+H G + GR +
Sbjct: 382 KDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRL 441
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 206/329 (62%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++SW +M+ ++ N + E L F EM + PD T+ +VL+A A +GAL LGR +
Sbjct: 184 RNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRV 243
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGF 122
H+Y+ ++G + ++G+AL+D+YAKCG ++ + VF ++ + + W S+I GLAV+GF
Sbjct: 244 HVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGF 303
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F M E + P +T + VL AC+H GLV++G F M Y+I P +EH G
Sbjct: 304 GKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLG 363
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG +++A + I + +PNAV+W LLG C +H+ LE+ A L+ L+P
Sbjct: 364 CMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPG 423
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+SG LL N+YA V RWA+V +R M + G+ K PG S +E+ VY+F D+SHP
Sbjct: 424 HSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKN-PGRSLVELRNSVYEFVMGDRSHP 482
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
S++IY L+++ + L+ Y+P +L
Sbjct: 483 ESEQIYQMLAEVADSLRREGYIPRTSNVL 511
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D S T++ + + + AL A + + + PD T +L ACA L +L G
Sbjct: 81 LPDPDPFSLNTVLRIAASSSRPSLAL-ALHARRLA--PPDTHTYPPLLQACARLLSLRHG 137
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
IH + G V++ ++LV +Y CG + + VF + E+NL WNS++ G A
Sbjct: 138 ERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFA 197
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G +E L +F M+ N P+G T +SVL+A G + GRR + +T + E
Sbjct: 198 ANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLV--EN 255
Query: 179 EHYG-CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
H G ++DL +K G +EDA + + V W +L+ G
Sbjct: 256 SHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVG 297
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 205/328 (62%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W+ M++ YS+ EAL F EM+ G+ PD+VTM +V+SACA GALDLG+ +
Sbjct: 240 KNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWV 299
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + G +D+ + +AL+DMYAKCG ++R+ VF + EK+ W+++I G A+HG
Sbjct: 300 HAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLV 359
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F RM+ V PN VTFI VLSAC H+GLVE+G RR+ S+ I P +E+YGC
Sbjct: 360 EDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG-RRYWSIMQNLGIKPSMENYGC 418
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++GLL+DA + PN+VIW LL CK ++IA A L+ LEP+N
Sbjct: 419 MVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHN 478
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N+YA S+W V+ +R MK + G S IE+ +++F SD SHP
Sbjct: 479 PENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTA-IAGRSSIEINGHLHEFVVSDDSHPE 537
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
EI L ++ ++++ A + P A+L
Sbjct: 538 IREIRLVLREMADRVRRAGHKPWTAAVL 565
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 6/230 (2%)
Query: 25 ALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
AL + M +G P+ T+A L ACA + A GR++H ++ G Y+ + L+
Sbjct: 158 ALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLL 217
Query: 84 DMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
++YAKC + + VF + +KNL W++++ G + G +EAL +F M VEP+
Sbjct: 218 NLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDE 277
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
VT +SV+SAC AG ++ G+ + IT ++E ++D+ +K GL+E A +
Sbjct: 278 VTMVSVISACAKAGALDLGKWVHAYID-RKGITVDLELSTALIDMYAKCGLIERARGVF- 335
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLL 250
+ + + W A++ G +H +E A + ++ L+ PNN + +L
Sbjct: 336 DAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVL 385
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +W+ MI ++ + +AL F+ M + P+ VT VLSACAH G ++ G
Sbjct: 338 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 397
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
R + +G + +VD+ + G LD
Sbjct: 398 RRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 430
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG 156
+F ++ + FC+NS+I L G A ALA++ RM+ + PN T L AC
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189
Query: 157 LVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
EGR+ ++ G + + V+ +++L +K + A + N V W A
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQ--TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247
Query: 216 LLGG 219
++ G
Sbjct: 248 MVSG 251
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
MP ++I+SW T+I+ Q F EA++ F M++ G++ D VTM ++ SAC HLGALDL
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ I+ Y+ + G +DV +G+ LVDM+++CG + ++ +F L +++ W + I +A+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A A+ +FD MI + ++P+GV F+ L+AC+H GLV++G+ F SM + ++PE
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLLE+A++LI +PN VIW +LL C++ N+E+A A ++ +L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P +G LL N+YA RW ++ K+R++MKE G+ K PG+S I++ K ++F + D+
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP-PGTSSIQIRGKTHEFTSGDE 727
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP I + L ++ ++ +VP+L +L
Sbjct: 728 SHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I Y+ + EA+ F M NSGISPD+ T LSACA A G +IH ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G+ D+++ ++LV YA+CG LD + VF ++ E+N+ W S+I G A FA +A+
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 129 MFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
+F RM+ E V PN VT + V+SAC +E G + +
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M R+++SWT+MI Y++ ++A+D F M ++ ++P+ VTM V+SACA L L+
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +++ ++ G +++ + SALVDMY KC ++D + +F + NL N++
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
G EAL +F+ M+ V P+ ++ +S +S+C+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 33/226 (14%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
M + Y + REAL FN M +SG+ PD+++M + +S+C+ L + G+ H YV++
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 365
Query: 70 IGFDIDVYIGSALVDMYAKC-------------------------------GSLDRSLLV 98
GF+ I +AL+DMY KC G +D +
Sbjct: 366 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGL 157
F + EKN+ WN+II GL EA+ +F M E V +GVT +S+ SAC H G
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
++ + + + I +V +VD+ S+ G E A+ + S
Sbjct: 486 LDLAKWIYYYIE-KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 530
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 53/256 (20%)
Query: 33 KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
K S ++ + T AT S+ + +D + H + + G D DV + LV + G+
Sbjct: 22 KPSLLNQSKCTKATP-SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGT- 79
Query: 93 DRSLLVFFKLREKN------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
R L F K +N F +NS+I G A G +EA+ +F RM+ + P+ TF
Sbjct: 80 -RESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFP 138
Query: 147 SVLSACT-----------HAGLVEEGRRRFL----SMTCGYSITPEVEHYGCMVDLLSKA 191
LSAC H +V+ G + L S+ Y+ E++ + D +S+
Sbjct: 139 FGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSER 198
Query: 192 GLL---------------EDALEL----IRSSKFQPNAVIWGALLGGCKLHRNLEIAH-- 230
++ +DA++L +R + PN+V ++ C +LE
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKV 258
Query: 231 --------IAVNELMI 238
I VN+LM+
Sbjct: 259 YAFIRNSGIEVNDLMV 274
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 214/329 (65%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A+D + WT MI + +N++ AL+AF M+ + P++ T+ VLSAC+ LGAL++GR
Sbjct: 197 AKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 256
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y+ + ++++++G+AL++MY++CGS+D + VF +++++++ +N++I GL+++G
Sbjct: 257 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 316
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ +A+ +F MI + P VTF+ VL+AC+H GLV+ G + F SMT Y + P++EHYG
Sbjct: 317 SRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYG 376
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL + G LE+A +LIR+ K P+ ++ G LL CK+H+NLE+ L
Sbjct: 377 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQA 436
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+SG LL ++YA +W E ++R MKE G++K PG S IE+ ++++F D HP
Sbjct: 437 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE-PGCSSIEVNNEIHEFLLGDLRHP 495
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ IY L +L+ L+L Y PE E +L
Sbjct: 496 RKERIYEKLEELNRLLRLEGYHPEKEVVL 524
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 37/253 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +T +I + + + +A+ ++ M + I PD MA++L AC AL GRE+H
Sbjct: 94 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVH 153
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----KNLFCWNSIIEGLAVH 120
+++G + + ++++Y KCG L + VF ++ E K+ CW ++I+G +
Sbjct: 154 SRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRN 213
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR------RRF---LSMTCG 171
+ AL F M ENV PN T + VLSAC+ G +E GR R+F L++ G
Sbjct: 214 EEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 273
Query: 172 YSI---------------------TPEVEHYGCMVDLLSKAGLLEDALELIR---SSKFQ 207
++ +V Y M+ LS G A+EL R + +
Sbjct: 274 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 333
Query: 208 PNAVIWGALLGGC 220
P V + +L C
Sbjct: 334 PTNVTFVGVLNAC 346
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I++ TMI+ S N + R+A++ F M + P VT VL+AC+H G +D G
Sbjct: 296 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 355
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+I H G + + +VD+ + G L+ +
Sbjct: 356 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEA 391
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89
N S S DQ + ++L H+ + IH +++ G D ++ L+ +KC
Sbjct: 21 NSNPKSLKSLDQKQIISLLQRSKHINQV---LPIHAQLIRNGHSQDPFMVFELLRSCSKC 77
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++D + +F N++ + ++I+G G +A+ ++ RM+++++ P+ S+L
Sbjct: 78 HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASIL 137
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA---LELIRSSK 205
AC + EGR ++ G S V +++L K G L DA E +
Sbjct: 138 KACGSQLALREGREVHSRALKLGLSSNRLVRLR--IMELYGKCGELGDARRVFEEMPEDV 195
Query: 206 FQPNAVIWGALLGG 219
+ V W A++ G
Sbjct: 196 VAKDTVCWTAMIDG 209
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD+ +WT +IT Y+Q Q +AL+ F +M+ G+ P++ T+A LS C+ L +L+ G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V + G D+++GSALVDMYAKCG ++ + +F L ++ WN+II G A +
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++AL F M+ E + P+GVTF +LSAC+H GLVEEG+ F SM + I+P V+H
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDH 756
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVD+L + G ++ + I+ + NA+IW +LG K+H NL + A N+L L+
Sbjct: 757 CACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQ 816
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P LL N++A RW +V ++R M G++K PG SW+E +V+ F + D S
Sbjct: 817 PEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKE-PGCSWVEANGQVHTFVSHDYS 875
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI+ L +LD +L YVP+ E +L
Sbjct: 876 HPQIQEIHLKLDELDRELASIQYVPKTEYVL 906
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT +I +++ F EM+N GI P++ T+AT L AC+ ALDLG
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++G +D+++GSALVD+YAKCG ++ + +F + E+N WN ++ G A
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G L +F M+ +V+ N T +VL C ++ +++G+ L + CGY E
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN---E 349
Query: 180 HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
GC +VD+ SK GL DA+ + ++ K +P+ V+W AL+ C + I + LM
Sbjct: 350 FIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI-TCLDQQGQSEESIKLFHLMR 407
Query: 239 LE---PNNSGYCTLL 250
L PN C+LL
Sbjct: 408 LGDTLPNQYTICSLL 422
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 144/314 (45%), Gaps = 46/314 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ ++W ++ Y+Q L F M + ++ T+ TVL CA+ L G
Sbjct: 274 MPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG 333
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH +++ G++ + +IG LVDMY+KCG ++ VF +++ ++ W+++I L
Sbjct: 334 QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQ 393
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + E++ +F M + PN T S+LSA T+ G ++ G + + Y +V
Sbjct: 394 GQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAV 452
Query: 181 YGCMVDLLSKAGLLEDALELIRS----------------------------------SKF 206
+V + K G + D +L S F
Sbjct: 453 SNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGF 512
Query: 207 QPNAVIWGALLGGCK----LHRNLEI-AHIAVNELMILEPNNSGYCTLLLNMYAEVSRW- 260
PN + ++LG C +H ++ AHI N+L +N+ CT L++MYA+
Sbjct: 513 IPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL----DDNNFVCTALIDMYAKCMYLE 568
Query: 261 -AEVTKIRVAMKEL 273
A+V R+++++L
Sbjct: 569 DADVAFNRLSVRDL 582
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++ + L F M G P+ T ++L +C+ L + G
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++ D + ++ +AL+DMYAKC L+ + + F +L ++LF W II A
Sbjct: 536 RQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQT 595
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL F +M E V+PN T LS C+ + EG ++ SM ++
Sbjct: 596 NQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASL-EGGQQLHSMVFKSGHVSDMFV 654
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G +E+A E + + + + + W ++ G
Sbjct: 655 GSALVDMYAKCGCMEEA-EALFEALIRRDTIAWNTIICG 692
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
+++L CA +L + + IH +++ + D ++ +LV++YAKC + LV K+ +
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
+++ W ++I+GL GFA++++ +F M E + PN T + L AC+ ++ G++
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + ++ +VDL +K G +E A ++ Q N V W LL G
Sbjct: 236 H-AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQ-NDVTWNVLLNG 288
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 199/327 (60%), Gaps = 3/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W MI + + EAL F M+ G++ + +M +VLS CA L +LD G
Sbjct: 295 MKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +++ FD D+Y+ S L+ MY KCG L R+ +F + K++ WNS+I G + H
Sbjct: 355 RQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQH 414
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M V+P+ VTFI VLSAC+++G V+EG F +M C Y + P +EH
Sbjct: 415 GLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEH 474
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG +++A+EL+ +P+A++WGALLG C+ H L++A +AV +L LE
Sbjct: 475 YACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLE 534
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD-K 299
P N+G LL +MYA RW +V +R + I + PG SWIE+E+KV+ F D K
Sbjct: 535 PKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI--KFPGCSWIEVEKKVHMFTGGDSK 592
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP I L KL L+ A Y P+
Sbjct: 593 SHPEQHMITQMLEKLSGFLREAGYCPD 619
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 113/280 (40%), Gaps = 64/280 (22%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++ T MI Y Q + EA + F+EMK + T T++S A G +D+
Sbjct: 171 IPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVA 226
Query: 61 R----------EIHLYVMQIGFDIDVYIGSA-----------------LVDMYAKCGSLD 93
R E+ M +G+ + A ++ + G +
Sbjct: 227 RKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMH 286
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
R+ ++F ++E++ WN++I+ G EAL +F RM E V N + ISVLS C
Sbjct: 287 RARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCA 346
Query: 154 HAGLVEEGRRRF--------------------LSMTCGYSIT----------PEVEHYGC 183
++ GR+ + + CG + +V +
Sbjct: 347 SLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNS 406
Query: 184 MVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGC 220
M+ S+ GL E+AL + SS QP+ V + +L C
Sbjct: 407 MITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSAC 446
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT+M+ Y Q EA F EM + V+ ++ +D
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGLLKESRIDDA 164
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
+++ FD+ DV + + ++ Y + G LD + +F +++ +N+F W +++ G
Sbjct: 165 KKL--------FDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSG 216
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
A +G A +F+ M E N V++ ++L T +G ++E F +M + +
Sbjct: 217 YAKNGRVDVARKLFEVM----PERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVA 271
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 26/223 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I SW M++ Y ++ + R+AL F++M + V+ ++S G +
Sbjct: 47 LPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR----NTVSFNGMISGYVKNGMVADA 102
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R++ FD+ +V +++V Y + G ++ + +F+++ +N+ W +I G
Sbjct: 103 RKV--------FDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGG 154
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
L +A +FD + ++V V +++ G ++E R F M T
Sbjct: 155 LLKESRIDDAKKLFDMIPEKDV----VVVTNMIGGYCQVGRLDEARELFDEMKVRNVFT- 209
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ MV +K G ++ A +L + N V W A+L G
Sbjct: 210 ----WTTMVSGYAKNGRVDVARKLFEVMP-ERNEVSWTAMLMG 247
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 13/193 (6%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A+V Y + +LL+F ++ ++N +N +I G +G +A +FD M NV
Sbjct: 56 NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNV- 114
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
V++ S++ G+VEE + F M V + M+ L K ++DA +
Sbjct: 115 ---VSWTSMVRGYVQEGMVEEAEKLFWEMP-----RRNVVSWTVMIGGLLKESRIDDAKK 166
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259
L + V+ + G C++ R L+ A +E+ + N T +++ YA+ R
Sbjct: 167 LFDMIPEKDVVVVTNMIGGYCQVGR-LDEARELFDEMKV---RNVFTWTTMVSGYAKNGR 222
Query: 260 WAEVTKIRVAMKE 272
K+ M E
Sbjct: 223 VDVARKLFEVMPE 235
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 212/328 (64%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R++++W+TMI+ Y++ EAL F +M+ +G+ PD+VTM +V+SACA GALD G+ +
Sbjct: 156 RNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWV 215
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + + D+ + +ALV+MYAKCG ++R+ VF + K+ W+S+I GLA++G A
Sbjct: 216 HAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLA 275
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL F RM V+PN VTFI VLSAC H+GLV EGRR + SM + I P +E YGC
Sbjct: 276 EDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGC 334
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +A L+EDA L+ + PN VIW LL GCK +NL+ + + L+ LEP+N
Sbjct: 335 MVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHN 394
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+ LL N+YA +S+W +++++R MK +GI K PG S IE++ V++F D SHP
Sbjct: 395 AENYILLSNLYASMSQWEKMSQVRKKMKGMGI-KAVPGCSSIEVDGLVHEFVMGDWSHPE 453
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ E+ L + +++ + P + +L
Sbjct: 454 AMEVREILRDISKRVHAVGHQPGISDVL 481
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 12/253 (4%)
Query: 5 DIISWTTMITCYSQNKQ-FREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDLGRE 62
+I SW +MI SQ++ +E + F +M G +P+ TMA VL AC+ + AL+ G++
Sbjct: 54 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 113
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H V++ GF ++ +ALV+ YAKC + + VF ++ ++NL W+++I G A G
Sbjct: 114 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 173
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+EAL +F M V P+ VT +SV+SAC +G ++ G+ + I ++E
Sbjct: 174 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYIN-KQLIETDLELST 232
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-- 240
+V++ +K G +E A E+ + + + W +++ G ++ +A A+ E +E
Sbjct: 233 ALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLAIN---GLAEDALEEFFRMEEA 288
Query: 241 ---PNNSGYCTLL 250
PN+ + +L
Sbjct: 289 KVKPNHVTFIGVL 301
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +W++MI + N +AL+ F M+ + + P+ VT VLSACAH G + G
Sbjct: 254 MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 313
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-DRSLLVFFKLREKNLFCWNSIIEG 116
R +++ G + + +VD+ + + D LV N W +++ G
Sbjct: 314 RRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 370
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 61 REIH-------LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
R+IH + + I F + IG + Y G +D + +F +++ N+F WNS+
Sbjct: 5 RQIHARLLTHAMPISSISFGLCKIIGFCALSPY---GDIDYARKLFSQIQRPNIFSWNSM 61
Query: 114 IEGLA-VHGFAHEALAMFDRMI---YENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-M 168
I G + + E + +F +M+ Y N PN T VL AC+ +EEG++ + +
Sbjct: 62 IRGCSQSQTPSKEPVILFRKMVRRGYPN--PNTFTMAFVLKACSIVSALEEGQQVHANVL 119
Query: 169 TCGYSITPEVEH-----------------------------YGCMVDLLSKAGLLEDALE 199
G+ +P VE + M+ ++ GL+ +AL
Sbjct: 120 KSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 179
Query: 200 LIR---SSKFQPNAVIWGALLGGCKLHRNLEIA---HIAVNELMILEPNNSGYCTLLLNM 253
L R + P+ V +++ C L+ H +N+ +I + T L+NM
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLI--ETDLELSTALVNM 237
Query: 254 YAE 256
YA+
Sbjct: 238 YAK 240
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 199/326 (61%), Gaps = 4/326 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
RD+++WT MI Y+Q+ AL F+ M + I P+ T++ L ACA L AL GR
Sbjct: 574 RDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGR 633
Query: 62 EIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H YV++ + + +++ + L+DMY+K G +D + +VF + ++N W S++ G +H
Sbjct: 634 QVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMH 693
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD M + P+G+TF+ VL AC+H+G+V+ G F M+ + + P EH
Sbjct: 694 GRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEH 753
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL +AG L +A++LI +P V+W ALL C+LH N+E+ A N L+ LE
Sbjct: 754 YACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELE 813
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G TLL N+YA RW +V +IR MK GI+KR PG SWI+ + V F D+S
Sbjct: 814 SGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKR-PGCSWIQGRKGVATFYVGDRS 872
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S +IY +L+ L +++K YVP+
Sbjct: 873 HPQSQQIYETLADLIQRIKAIGYVPQ 898
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 139/263 (52%), Gaps = 14/263 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++WT +IT Y+Q Q EALD F +M + G P+ VT+ ++LSAC +GAL G+E H
Sbjct: 464 DVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETH 523
Query: 65 LYVMQIGFDI--------DVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSII 114
Y ++ ++ D+ + + L+DMYAKC S + R + +++++ W +I
Sbjct: 524 CYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMI 583
Query: 115 EGLAVHGFAHEALAMFDRMIY--ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172
G A HG A+ AL +F M ++++PN T L AC + GR+ + +
Sbjct: 584 GGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNF 643
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
+ + C++D+ SK+G ++ A +++ + Q NAV W +L+ G +H E A
Sbjct: 644 YGSVMLFVANCLIDMYSKSGDVDTA-QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRV 702
Query: 233 VNELMILEPNNSGYCTLLLNMYA 255
+E+ + G T L+ +YA
Sbjct: 703 FDEMRKVPLVPDG-ITFLVVLYA 724
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 44/264 (16%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDLGRE 62
+D++SW ++++ Y AL F++M + SPD +++ +L ACA L A GR+
Sbjct: 326 QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ 385
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H + ++ G DV++G+A+VDMYAKCG ++ + VF +++ K++ WN+++ G + G
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445
Query: 123 AHEALAMFDRMIYENVE-----------------------------------PNGVTFIS 147
AL++F+RM EN+E PN VT +S
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVS 505
Query: 148 VLSACTHAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
+LSAC G + G+ + L++ +++ ++D+ +K E A ++
Sbjct: 506 LLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKM 565
Query: 201 IRS-SKFQPNAVIWGALLGGCKLH 223
S S + V W ++GG H
Sbjct: 566 FDSVSPKDRDVVTWTVMIGGYAQH 589
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
R+ + +MK+ G +PD T V ACA+L +L LG +H V + GF +V++ +A+
Sbjct: 241 RDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAV 300
Query: 83 VDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV- 138
V MY KCG+L + +F L + +L WNS++ A+ ALA+F +M ++
Sbjct: 301 VSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLM 360
Query: 139 EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI----TPEVEHYGCMVDLLSKAGLL 194
P+ ++ +++L AC GR+ G+SI +V +VD+ +K G +
Sbjct: 361 SPDVISLVNILPACASLAASLRGRQ-----VHGFSIRSGLVDDVFVGNAVVDMYAKCGKM 415
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
E+A ++ + KF+ + V W A++ G LE A
Sbjct: 416 EEANKVFQRMKFK-DVVSWNAMVTGYSQAGRLEHA 449
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 41/165 (24%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SWT+++T Y + + +AL F+EM+ + PD +T VL AC+H G +D G
Sbjct: 675 MPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHG 734
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
+ ++ D V G + +VD++ + G L
Sbjct: 735 IN---FFNRMSKDFGVDPGPEHYACMVDLWGRAGRLG----------------------- 768
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
EA+ + + M +EP V ++++LSAC VE G
Sbjct: 769 --------EAMKLINEM---PMEPTPVVWVALLSACRLHSNVELG 802
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 205/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT +I+ Y Q ALD F +M GI P+Q+T+ ++LSAC +LGA+ LG
Sbjct: 647 MPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG 706
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H + ++GFD +++G++L+ MY KCG D VF ++ E +L WN+++ G A +
Sbjct: 707 EQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQN 765
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F++M E + P+ ++F+ VL AC+HAGLV+EG F SMT Y I P V H
Sbjct: 766 GLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYH 825
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A LI + +P++VIW ALLG C++HRN+E+ L +
Sbjct: 826 YTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMT 885
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
S LL N++A W +V +IR MK+ G+ K PG SWI+++ K++ F D++
Sbjct: 886 KPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKE-PGISWIQVKNKLHCFVTGDRT 944
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H +EIYS+L + + Y+P+ +L
Sbjct: 945 HDQIEEIYSALKEYYGCFRATGYMPDTNFVL 975
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ SW MI + QN++ REAL+ E+ SG P + + LSACA++G +++G
Sbjct: 515 MPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG 574
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH ++ G + Y+ + L+ MYAKCG+++ VF +R K+ WNS+I GL+ +
Sbjct: 575 RVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSEN 634
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+A +F++M +V V++ +++SA AG E FL M
Sbjct: 635 YMLDDARVVFEKMPKRDV----VSWTAIISAYVQAGHGEVALDLFLDM 678
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 113/219 (51%), Gaps = 10/219 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW MI+ Y + EA D F +M + PDQ VLSA L L+L
Sbjct: 321 MPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELI 380
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ ++ G++ DV +GSA+++ Y + GSLD ++ F + E+N + W ++I A
Sbjct: 381 GSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQC 440
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +++R+ + V T ++++A G +++ R F + + P V
Sbjct: 441 GRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVA 491
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ ++ G+L++A +L + + N+ W A++ G
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIAG 529
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 12/237 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ SWTTMI ++Q + +A+ + + ++ T +++A A +G +
Sbjct: 422 MPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKA 477
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I ++ + +V +A++ Y + G L + +F K+ KN W ++I G +
Sbjct: 478 RLIFDEIL----NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQN 533
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+ EAL + + P+ +F S LSAC + G VE GR L++ G V
Sbjct: 534 EESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYV- 592
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++ + +K G +ED + R+ + + + V W +L+ G + L+ A + ++
Sbjct: 593 -MNGLISMYAKCGNVEDGSHVFRTIRVK-DTVSWNSLISGLSENYMLDDARVVFEKM 647
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 24/236 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW +MI YSQN + EA F+ I T +L+ A G ++
Sbjct: 197 MIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILLTGYAKEGRIEEA 252
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE V + + +V +A++ Y + G L + +F ++ EKN+ WNS++ G
Sbjct: 253 RE----VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHC 308
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA +FD+M E N V+++ ++S H E F+ M C P+
Sbjct: 309 YRMSEARELFDQM----PERNSVSWMVMISGYVHISDYWEAWDVFVKM-CRTVARPDQSI 363
Query: 181 YGCMVDLLSKAGLLEDALELIRS-------SKFQPNAVIWGALLGGCKLHRNLEIA 229
+ +V L + GL D LELI S + ++ + V+ A+L + +L++A
Sbjct: 364 F--VVVLSAITGL--DDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLA 415
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 208/325 (64%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D ++WT MI Y++ Q A+ F +M+ +G+ PD VTM +VLSAC LGAL+LG
Sbjct: 171 MPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ I Y+ + V + +ALVDM+AKCG +D++L +F + ++ + W S+I GLA+H
Sbjct: 231 KWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMH 290
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+++F+ M + P + FI +LSAC+H+GLVE GR+ F MT + I P++EH
Sbjct: 291 GRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEH 350
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGL+ +ALE + +PN +IW L+ C++H L++ +L+ E
Sbjct: 351 YGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNE 410
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + LL N+Y ++ W + +KIRVAM + GI+K PGS+ IE++ ++++F D+S
Sbjct: 411 PMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQK-VPGSTMIELDNEIHEFIVGDRS 469
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
H +EI ++++ ++K A Y P
Sbjct: 470 HNQYNEIIKMVNEMGREMKRAGYAP 494
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 5/226 (2%)
Query: 5 DIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
D ++T+I Y+++ Q + A+ +N M GISP++ VL ACA L L+LG+ +
Sbjct: 72 DAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAV 131
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H +++ GFD D+++ + +V MY C G ++ + +F ++ + + W ++I G A G
Sbjct: 132 HGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQ 191
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ A+ +F +M V P+ VT +SVLSACT G +E G + S + VE
Sbjct: 192 SAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIESYIEKERVLKTVELSN 250
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE 227
+VD+ +K G ++ AL L R+ + V W +++ G +H R LE
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMHGRGLE 295
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD+ +WT +IT Y+Q Q +AL+ F +M+ G+ P++ T+A LS C+ L +L+ G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V + G D+++GSALVDMYAKCG ++ + +F L ++ WN+II G A +
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G ++AL F M+ E + P+GVTF +LSAC+H GLVEEG+ F SM + I+P V+H
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDH 756
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVD+L + G ++ + I+ + NA+IW +LG K+H NL + A N+L L+
Sbjct: 757 CACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQ 816
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P LL N++A RW +V ++R M G++K PG SW+E +V+ F + D S
Sbjct: 817 PEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKE-PGCSWVEANGQVHTFVSHDYS 875
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI+ L +LD +L YVP+ E +L
Sbjct: 876 HPQIQEIHLKLDELDRELASIQYVPKTEYVL 906
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT +I +++ F EM+N GI P++ T+AT L AC+ ALDLG
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++G +D+++GSALVD+YAKCG ++ + +F + E+N WN ++ G A
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G L +F M+ +V+ N T +VL C ++ +++G+ L + CGY E
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGN---E 349
Query: 180 HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
GC +VD+ SK GL DA+ + ++ K +P+ V+W AL+ C + I + LM
Sbjct: 350 FIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI-TCLDQQGQSEESIKLFHLMR 407
Query: 239 LE---PNNSGYCTLL 250
L PN C+LL
Sbjct: 408 LGDTLPNQYTICSLL 422
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 144/314 (45%), Gaps = 46/314 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ ++W ++ Y+Q L F M + ++ T+ TVL CA+ L G
Sbjct: 274 MPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG 333
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH +++ G++ + +IG LVDMY+KCG ++ VF +++ ++ W+++I L
Sbjct: 334 QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQ 393
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + E++ +F M + PN T S+LSA T+ G ++ G + + Y +V
Sbjct: 394 GQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAV 452
Query: 181 YGCMVDLLSKAGLLEDALELIRS----------------------------------SKF 206
+V + K G + D +L S F
Sbjct: 453 SNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGF 512
Query: 207 QPNAVIWGALLGGCK----LHRNLEI-AHIAVNELMILEPNNSGYCTLLLNMYAEVSRW- 260
PN + ++LG C +H ++ AHI N+L +N+ CT L++MYA+
Sbjct: 513 IPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL----DDNNFVCTALIDMYAKCMYLE 568
Query: 261 -AEVTKIRVAMKEL 273
A+V R+++++L
Sbjct: 569 DADVAFNRLSVRDL 582
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++ + L F M G P+ T ++L +C+ L + G
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++ D + ++ +AL+DMYAKC L+ + + F +L ++LF W II A
Sbjct: 536 RQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQT 595
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL F +M E V+PN T LS C+ +E G ++ SM ++
Sbjct: 596 NQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG-QQLHSMVFKSGHVSDMFV 654
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G +E+A E + + + + + W ++ G
Sbjct: 655 GSALVDMYAKCGCMEEA-EALFEALIRRDTIAWNTIICG 692
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
+++L CA +L + + IH +++ + D ++ +LV++YAKC + LV K+ +
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
+++ W ++I+GL GFA++++ +F M E + PN T + L AC+ ++ G++
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + ++ +VDL +K G +E A ++ Q N V W LL G
Sbjct: 236 H-AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQ-NDVTWNVLLNG 288
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 197/329 (59%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ I WT +I+ ++QN EAL + EM + PDQ T A+VL AC+ L +L GR I
Sbjct: 717 KSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMI 776
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN-LFCWNSIIEGLAVHGF 122
H + +G D D GSA+VDMYAKCG + S+ VF ++ KN + WNS+I G A +G+
Sbjct: 777 HSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGY 836
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A AL +FD M + + P+ VTF+ VL+AC+HAG V EGR F M Y I P ++H
Sbjct: 837 AENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCA 896
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL + G L++A E I F+PNA+IW LLG C++H + A +L+ LEP
Sbjct: 897 CMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPE 956
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS LL N+YA W EV +R AM+E G+ K PG SWI + +K F A DK HP
Sbjct: 957 NSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRK-LPGCSWIVVGQKTNLFVAGDKFHP 1015
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
++ EI++ L L +K Y+ E +++L
Sbjct: 1016 SAGEIHALLKDLIALMKEDGYIAETDSLL 1044
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 13/203 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ R+++ W M+ Y+QN + + F+EM+ G PD+ T ++LSACA L L++G
Sbjct: 410 LDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMG 469
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++ F+ ++++ + LVDMYAKCG+L+ + F +R ++ WN+II G
Sbjct: 470 RQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQE 529
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR--FLS----MTCGYSI 174
EA MF RMI + + P+ V+ S+LS C + +E+G + FL TC Y+
Sbjct: 530 EDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAG 589
Query: 175 TPEVEHYGCMVDLLSKAGLLEDA 197
+ ++D+ K G +E A
Sbjct: 590 SS-------LIDMYVKCGAIEAA 605
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 142/276 (51%), Gaps = 9/276 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RDI++W ++++ YS+ + + F ++N G+SP+Q T A VLS+CA L +DLG
Sbjct: 142 LEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLG 201
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H V+++GF+ + + +L+DMY+KCGSL + +F + + + W ++I G
Sbjct: 202 KQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQV 261
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F+ M + P+ V F++V++AC G +++ F+ M V
Sbjct: 262 GLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMP-----NTNVVA 316
Query: 181 YGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ M+ K G +A++ ++ + + G++L L + + +
Sbjct: 317 WNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAI 376
Query: 238 ILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMKE 272
N++ Y + L+NMYA+ + K+ A+ E
Sbjct: 377 KQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDE 412
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++W MI+ + + EA+D F M +G+ + T+ +VLSA A L AL+ G
Sbjct: 309 MPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYG 368
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ G + +VY+GS+L++MYAKC ++ + VF L E+NL WN+++ G A +
Sbjct: 369 LLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQN 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A + + +F M P+ T+ S+LSAC +E G R+ S ++ +
Sbjct: 429 GYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMG-RQLHSFIIKHNFEYNLFV 487
Query: 181 YGCMVDLLSKAGLLEDA---LELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G LE+A E IR+ + V W A++ G
Sbjct: 488 ENTLVDMYAKCGALEEARQQFEFIRNR----DNVSWNAIIVG 525
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +SW +I Y Q + EA + F M GI+PD+V++A++LS CA+L AL+ G ++
Sbjct: 514 RDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQV 573
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ G +Y GS+L+DMY KCG+++ + VF + +++ N+II G A +
Sbjct: 574 HCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV 633
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
EA+ +F M E + P+ +TF S+L ACT + GR+
Sbjct: 634 -EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQ 672
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R ++S +I Y+QN EA+D F EM+N G++P ++T A++L AC L+LG
Sbjct: 612 MPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLG 670
Query: 61 REIHLYVMQIG--FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R+IH + + G +D D ++G +L+ MY + ++F + + K+ W +II G
Sbjct: 671 RQIHCLIQKRGLLYDGD-FLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGH 729
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+G + EAL ++ M N P+ TF SVL AC+ + +G R S+ + +
Sbjct: 730 TQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDG-RMIHSLIFHVGLDSD 788
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G ++ ++++ + + + W +++ G
Sbjct: 789 ELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVG 830
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++ GF +GSA+VD+YAKCG+++ + F +L ++++ WNS++ +
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVE 179
G + + F + V PN T+ VLS+C ++ G++ + G+ E
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G ++D+ SK G L DA ++ + P+ V W A++ G
Sbjct: 221 --GSLIDMYSKCGSLVDARKIF-DAVVDPDTVSWTAMIAG 257
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 209/325 (64%), Gaps = 8/325 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++S+ TMI Y++ Q AL F EM+NS D+VT+ VLSACA LGA DLG+ +
Sbjct: 99 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRL 154
Query: 64 -HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGLAVH 120
H Y+ F+ + + +A++DMYAKCGS+D +L +F ++ + K F +NS+I GLA H
Sbjct: 155 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 214
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +F +I ++P+ VTF+ VL AC H+GL+EEG++ F SM Y I P++EH
Sbjct: 215 GLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEH 274
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G LE+A +L++ F+ N+VIW ALL C+ H N++I IA +L+ +E
Sbjct: 275 YGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEME 334
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ LL N+ A+ ++W E ++R M++ GI K PG S+IE+ +++F ASDKS
Sbjct: 335 AQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKP-PGWSYIELGGAIHRFVASDKS 393
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI L + +LK A YVP
Sbjct: 394 HPQGKEIELMLKDMAMRLKSAGYVP 418
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 126/246 (51%), Gaps = 8/246 (3%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREIHLYV 67
W TMI YS++ REA+ + M GI+P + T +L++CA L +L+ G E+H ++
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ GF+ D+++ +AL+ +Y+ G+L+ + +F + ++L +N++I+G A AL
Sbjct: 62 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+F M + VT ++VLSAC G + G+R + ++D+
Sbjct: 122 CLFGEM----QNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177
Query: 188 LSKAGLLEDALELIRS-SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNS 244
+K G ++ ALE+ R K ++ +++ G H E A EL+ L+P+
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237
Query: 245 GYCTLL 250
+ +L
Sbjct: 238 TFVGVL 243
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT MI+ +QN E L FN+MK+ G+ P A ++AC+ LG+LD G
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH V+++G D + G+AL+ MY++CG ++ + VF + + WN++I LA H
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQH 502
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F++M+ E++ P+ +TF+++L+AC HAGL++EGR F +M Y ITP +H
Sbjct: 503 GHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDH 562
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y ++DLL +AG+ A +I+S F+ A IW ALL GC++H N+E+ A + L+ L
Sbjct: 563 YARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELI 622
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G +L NMYA + +W EV ++R+ M+E G++K PG SW+E+E V+ F D
Sbjct: 623 PGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKE-PGCSWVEVENMVHVFLVDDAR 681
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +Y+ L +L ++K YVP+ + +L
Sbjct: 682 HPEVQAVYTYLQQLVNEMKKLGYVPDTKFVL 712
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 127/286 (44%), Gaps = 45/286 (15%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA----HLGALDLGRE 62
++W MI+ Y + + EA D F M + GI D+ T +++SAC +G + GR+
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ 308
Query: 63 IHLYVMQI-------------------------------GFDI----DVYIGSALVDMYA 87
+H Y+++ FD D+ +A++ Y
Sbjct: 309 VHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYV 368
Query: 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
++ + +F ++ E+N+ W +I GLA +GF E L +F++M E +EP F
Sbjct: 369 NAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAG 428
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
++AC+ G ++ G ++ S + ++ + S+ G++E A + + +
Sbjct: 429 AITACSVLGSLDNG-QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY- 486
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
++V W A++ H + + I + E M+ E P+ + T+L
Sbjct: 487 VDSVSWNAMIAALAQHGH-GVKAIELFEQMMKEDILPDRITFLTIL 531
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE- 62
RD +S+ MIT YS AL+ F +MK G PD T ++VLSA + + D R
Sbjct: 102 RDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIA--DEERHC 159
Query: 63 --IHLYVMQIGFDIDVYIGSALVDMYAKCGS---------LDRSLLVFFKLREKNLF--- 108
+H V+++G + + +AL+ Y C S + + VF + + ++
Sbjct: 160 QMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPS 219
Query: 109 ------------------------------CWNSIIEGLAVHGFAHEALAMFDRMIYENV 138
WN++I G G EA F RM +
Sbjct: 220 WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGI 279
Query: 139 EPNGVTFISVLSAC 152
+ + T+ S++SAC
Sbjct: 280 QEDEYTYTSLISAC 293
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 212/328 (64%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R++++W+TMI+ Y++ EAL F +M+ +G+ PD+VTM +V+SACA GALD G+ +
Sbjct: 225 RNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWV 284
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + + D+ + +ALV+MYAKCG ++R+ VF + K+ W+S+I GLA++G A
Sbjct: 285 HAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLA 344
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL F RM V+PN VTFI VLSAC H+GLV EGRR + SM + I P +E YGC
Sbjct: 345 EDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGC 403
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +A L+EDA L+ + PN VIW LL GCK +NL+ + + L+ LEP+N
Sbjct: 404 MVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHN 463
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+ LL N+YA +S+W +++++R MK +GI K PG S IE++ V++F D SHP
Sbjct: 464 AENYILLSNLYASMSQWEKMSQVRKKMKGMGI-KAVPGCSSIEVDGLVHEFVMGDWSHPE 522
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ E+ L + +++ + P + +L
Sbjct: 523 AMEVREILRDISKRVHAVGHQPGISDVL 550
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 12/253 (4%)
Query: 5 DIISWTTMITCYSQNKQ-FREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDLGRE 62
+I SW +MI SQ++ +E + F +M G +P+ TMA VL AC+ + AL+ G++
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H V++ GF ++ +ALV+ YAKC + + VF ++ ++NL W+++I G A G
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+EAL +F M V P+ VT +SV+SAC +G ++ G+ + I ++E
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYIN-KQLIETDLELST 301
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-- 240
+V++ +K G +E A E+ + + + W +++ G ++ +A A+ E +E
Sbjct: 302 ALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLAIN---GLAEDALEEFFRMEEA 357
Query: 241 ---PNNSGYCTLL 250
PN+ + +L
Sbjct: 358 KVKPNHVTFIGVL 370
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +W++MI + N +AL+ F M+ + + P+ VT VLSACAH G + G
Sbjct: 323 MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 382
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-DRSLLVFFKLREKNLFCWNSIIEG 116
R +++ G + + +VD+ + + D LV N W +++ G
Sbjct: 383 RRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 439
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 57/260 (21%)
Query: 44 MATVLSACAHLGALDLGREIH-------LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+A ++ C + L R+IH + + I F + IG + Y G +D +
Sbjct: 60 IALLIRKCRSMRVL---RQIHARLLTHAMPISSISFGLCKIIGFCALSPY---GDIDYAR 113
Query: 97 LVFFKLREKNLFCWNSIIEGLA-VHGFAHEALAMFDRMI---YENVEPNGVTFISVLSAC 152
+F +++ N+F WNS+I G + + E + +F +M+ Y N PN T VL AC
Sbjct: 114 KLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPN--PNTFTMAFVLKAC 171
Query: 153 THAGLVEEGRRRFLS-MTCGYSITPEVEH-----------------------------YG 182
+ +EEG++ + + G+ +P VE +
Sbjct: 172 SIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWS 231
Query: 183 CMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLEIA---HIAVNEL 236
M+ ++ GL+ +AL L R + P+ V +++ C L+ H +N+
Sbjct: 232 TMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQ 291
Query: 237 MILEPNNSGYCTLLLNMYAE 256
+I + T L+NMYA+
Sbjct: 292 LI--ETDLELSTALVNMYAK 309
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 201/323 (62%), Gaps = 2/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +DI+SW TMI YSQN EAL+ F +M+ PD +TMA VL ACA L ALD G
Sbjct: 733 IPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKG 791
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH ++++ G+ D+++ ALVDMYAKCG L + L+F + +K+L W +I G +H
Sbjct: 792 REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMH 851
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +EA++ F+ M +EP+ +F +L+AC+H+GL+ EG + F SM + P++EH
Sbjct: 852 GFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEH 911
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL++ G L A + I S +P+ IWG LL GC++H ++++A + LE
Sbjct: 912 YACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELE 971
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+ Y +L N+YAE +W EV K+R M++ G K+ PG SWIE+ K F A +
Sbjct: 972 PDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGF-KQNPGCSWIEVGGKFNIFVAGNSK 1030
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
HP + I L KL Q++ Y
Sbjct: 1031 HPQAKRIDVLLRKLTMQMQNEDY 1053
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 156/289 (53%), Gaps = 23/289 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M I+SWT+ I Y + + +A+ F+EM++ G+ PD T+ +++ ACA +LD G
Sbjct: 632 MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 691
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H YV++ G ++ + +AL++MYAKCGS++ + LVF K+ K++ WN++I G + +
Sbjct: 692 RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
+EAL +F M + +P+ +T VL AC +++GR RR GY
Sbjct: 752 SLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRR------GYF 804
Query: 174 ITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
H C +VD+ +K GLL A +L+ + + + W ++ G +H A
Sbjct: 805 SDL---HVACALVDMYAKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAIST 860
Query: 233 VNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK-ELGIEKR 278
NE+ I +EP+ S + +++LN + E K +M+ E G+E +
Sbjct: 861 FNEMRIAGIEPDESSF-SVILNACSHSGLLNEGWKFFNSMRNECGVEPK 908
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 2/215 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW +MI N L+ F +M G+ D T+ +VL A A++G L LGR +H
Sbjct: 535 DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALH 594
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ F +V + L+DMY+KCG+L+ + VF K+ + + W S I G
Sbjct: 595 GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYS 654
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+ +FD M + V P+ T S++ AC + +++G R S + + +
Sbjct: 655 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG-RDVHSYVIKNGMGSNLPVTNAL 713
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+++ +K G +E+A L+ S + V W ++GG
Sbjct: 714 INMYAKCGSVEEA-RLVFSKIPVKDIVSWNTMIGG 747
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +++ Y++ FRE++ F +M+ G+ + T VL A LG + + +H YV+
Sbjct: 438 WNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVL 497
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF + + ++L+ Y K G ++ + +F +L E ++ WNS+I G V+GF+ L
Sbjct: 498 KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLE 557
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVD 186
+F +M+ VE + T +SVL A + G + GR F C + EV ++D
Sbjct: 558 IFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC---FSEEVVFSNTLLD 614
Query: 187 LLSKAGLLEDALELI 201
+ SK G L A E+
Sbjct: 615 MYSKCGNLNGATEVF 629
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
+VL CA +L+ G+ +H ++ G ID +G+ LV MY CG L + +F K+
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-R 164
+F WN ++ A G E++++F +M V N TF VL G V+E +R
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 493
Query: 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ G+ V ++ K G +E A L +P+ V W +++ GC
Sbjct: 494 GYVLKLGFGSNTAV--VNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGC 546
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 208/327 (63%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RDI+SW +MIT +Q+ A+D F +M SGI D V+++ LSACA+L + G
Sbjct: 498 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFG 557
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++ +DVY S L+DMYAKCG+L ++ VF ++EKN+ WNSII H
Sbjct: 558 KAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNH 617
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G ++L +F M+ ++ P+ +TF+ ++S C H G V+EG R F SMT Y I P+ E
Sbjct: 618 GKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQE 677
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDL +AG L +A E ++S F P+A +WG LLG +LH+N+E+A +A + LM L
Sbjct: 678 HYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDL 737
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P NSGY L+ N +A W VTK+R MKE ++K PG SWIE+ + + F + D
Sbjct: 738 DPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQK-IPGYSWIEINKITHLFVSGDV 796
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP S IYS L+ L E+L+L Y+P+
Sbjct: 797 NHPESSHIYSLLNSLLEELRLEGYIPQ 823
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D ++W MI+ Y Q+ E+L F EM +SG+ PD +T +++L + + L+
Sbjct: 296 MSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 355
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH Y+M+ +D+++ SAL+D Y KC + + +F + ++ + ++I G +
Sbjct: 356 RQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHN 415
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE- 179
G +AL MF ++ + PN +T +S+L ++ GR G+ I +
Sbjct: 416 GLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELH-----GFIIKKGFDN 470
Query: 180 --HYGC-MVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGGCKLHRN 225
+ GC ++D+ +K G + A E+ R SK + V W +++ C N
Sbjct: 471 RCNIGCAVIDMYAKCGRMNLAYEIFGRLSK--RDIVSWNSMITRCAQSDN 518
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + W M+ Y++ + F+ M+ ISP+ VT VLS CA +DLG ++
Sbjct: 198 KDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL 257
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+ G D + I ++L+ MY+KCG D ++ +F + + WN +I G G
Sbjct: 258 HGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLM 317
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
E+L F MI V P+ +TF S+L + + +E R+
Sbjct: 318 EESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQ 357
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 4/215 (1%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W ++I+ + + +AL + +M G+SPD T ++ AC L +
Sbjct: 99 IRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSD 158
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V +G D + ++ S+L+ Y + G +D + +F ++ +K+ WN ++ G A G +
Sbjct: 159 TVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDS 218
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCM 184
+ F M + + PN VTF VLS C L++ G + L + G +++ +
Sbjct: 219 VIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN--SL 276
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + SK G +DA++L R + + V W ++ G
Sbjct: 277 LSMYSKCGRFDDAIKLFRMMS-RADTVTWNCMISG 310
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL- 102
++ +L C++L L G+++H +V+ D Y ++ MYA CGS +F++L
Sbjct: 34 LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93
Query: 103 -REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
R ++ WNSII G ++ALA + +M+ V P+ TF ++ AC L
Sbjct: 94 SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV--ALKNFK 151
Query: 162 RRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
FLS T S+ + + ++ + G ++ A +L Q + VIW +L G
Sbjct: 152 GIEFLSDTVS-SLGMDCNEFVASSLIKAYLEYGKIDVAGKLF-DRVLQKDCVIWNVMLNG 209
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 195/315 (61%), Gaps = 1/315 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD++ W ++I+ +Q+ + ALD EM S + + VTM + L AC+ L AL G
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ G D +I ++L+DMY +CGS+ +S +F + +++L WN +I +H
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 679
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +A+ +F ++PN +TF ++LSAC+H+GL+EEG + F M Y++ P VE
Sbjct: 680 GFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQ 739
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+AG + LE I F+PNA +WG+LLG C++H N ++A A L LE
Sbjct: 740 YACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELE 799
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG L+ N+Y+ RW + KIR MKE G+ K PG SWIE++RK++ F D S
Sbjct: 800 PQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKP-PGCSWIEVKRKLHSFVVGDTS 858
Query: 301 HPASDEIYSSLSKLD 315
HP ++I KLD
Sbjct: 859 HPLMEQISGKDGKLD 873
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 33/249 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DII+W ++T ++Q + AL+ F M + G+ P+ T++ L+AC + L LG+EIH
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIH 522
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ ++ +GSAL+ MY+ C SL+ + VF +L +++ WNSII A G +
Sbjct: 523 GYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSV 582
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSM----TCGYSITPEV 178
AL + M NVE N VT +S L AC+ + +G+ +F+ TC + + +
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642
Query: 179 EHYG------------------------CMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ YG M+ + G DA+ L R+ +PN +
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHI 702
Query: 212 IWGALLGGC 220
+ LL C
Sbjct: 703 TFTNLLSAC 711
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 134/301 (44%), Gaps = 29/301 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ SWT ++ Y + E + F M N G+ PD V AC+ L +G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++++ Y++ IGF+ + + +++DM+ KCG +D + F ++ K++F WN ++ G
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL M V+P+ VT+ +++S +G EE + FL M P V
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329
Query: 181 YGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGCK----LHRNLEIAHIAV 233
+ ++ + G +AL + R +PN++ + + C L EI
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI----- 384
Query: 234 NELMILEPNNSGYC-------TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
GYC + LL + V +A+ + VA ++ G+ K+ SW
Sbjct: 385 ----------HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNA 434
Query: 287 M 287
M
Sbjct: 435 M 435
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT +I QN EAL F +M G+ P+ +T+A+ +SAC +L L GREIH
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385
Query: 65 LYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y +++ D D+ +G++LVD YAKC S++ + F +++ +L WN+++ G A+ G
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
EA+ + M ++ +EP+ +T+ +++ T G
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYG 478
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 130/269 (48%), Gaps = 16/269 (5%)
Query: 38 SPDQVT--MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+PD+ A++L C L L LG ++H ++ G D+ ++GS L+++Y + G ++ +
Sbjct: 84 NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 143
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
+F K+ E+N+F W +I+E G E + +F M+ E V P+ F V AC+
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203
Query: 156 GLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
G+ + M + G+ V+ G ++D+ K G ++ A +F+ + +W
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVK--GSILDMFIKCGRMDIARRFFEEIEFK-DVFMWN 260
Query: 215 ALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
++ G + A ++++ + ++P+ + +++ YA+ ++ E +K + M
Sbjct: 261 IMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW-NAIISGYAQSGQFEEASKYFLEMG- 318
Query: 273 LGIEKRCPG-SSWIEM----ERKVYQFAA 296
G++ P SW + E+ Y F A
Sbjct: 319 -GLKDFKPNVVSWTALIAGSEQNGYDFEA 346
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 205/330 (62%), Gaps = 9/330 (2%)
Query: 5 DIISWTTMITCYSQNKQF--------REALDAFNEMKNSGISPDQVTMATVLSACAHLGA 56
D+ SW ++++ Y N E L F EM+ S I ++VT+ ++SACA LGA
Sbjct: 174 DLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGA 233
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
L G H+YV++ ++ ++G+AL+DMY+KCG LD + +F +L ++ C+N++I G
Sbjct: 234 LSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGG 293
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A+HG+ H+AL +F +M E + P+ VT + + +C+H GLVEEG F SM Y + P
Sbjct: 294 FAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEP 353
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++EHYGC+VDLL +AG L +A E + + +PNAVIW +LLG ++H NLEI + + L
Sbjct: 354 KLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHL 413
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ LEP SG LL NMYA ++RW +V ++R MK+ GI K PGSS +E+ +++F
Sbjct: 414 IQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINK-VPGSSLVEVGGAMHEFLM 472
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
DK+HP S EIY L ++ +L + P
Sbjct: 473 GDKTHPRSKEIYLKLEEMSRRLHEYGHKPR 502
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 19/237 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE-ALDAFNE-MKNSGISPDQVTMATVLSACAHLGALD 58
+P I + T+I+ + K A ++ + ++ + P+ T ++ AC L
Sbjct: 66 IPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLR 125
Query: 59 LGREIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
GR +H +V++ + D ++ +AL++ YAKCG + +F ++ + +L WNSI+
Sbjct: 126 HGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAY 185
Query: 118 AVHG---------FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
VH + E L +F M ++ N VT ++++SAC G + +G + +
Sbjct: 186 -VHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYV 244
Query: 169 TCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ H+ ++D+ SK G L+ A +L + + + + A++GG +H
Sbjct: 245 ---LKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHR-DTLCYNAMIGGFAIH 297
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD + + MI ++ + +ALD F +M G++PD VT+ + +C+H+G ++ G
Sbjct: 279 LPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 338
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
++ + ++ G + + LVD+ + G L + + K N W S++
Sbjct: 339 CDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAAR 398
Query: 119 VHG 121
VHG
Sbjct: 399 VHG 401
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 204/334 (61%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R II+W +MI+ Y QN EA++ FN+M+ SG PD T +VLSAC+ LG+LDLG
Sbjct: 169 MPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ G ++V + ++LV+M+++CG + R+ VF + E N+ W ++I G +H
Sbjct: 229 CWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMH 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ +F RM V PN VT+++VLSAC HAGL+ EGR F SM Y + P VEH
Sbjct: 289 GYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEH 348
Query: 181 YGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ CMVD+ + GLL +A + +R S + P +W A+LG CK+H+N ++ L+
Sbjct: 349 HVCMVDMFGRGGLLNEAYQFVRGLSSEELVP--AVWTAMLGACKMHKNFDLGVEVAENLI 406
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
EP N G+ LL NMYA R V +R M + G++K+ G S I++E + Y F+
Sbjct: 407 SAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQV-GYSTIDVENRSYLFSMG 465
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DKSHP ++EIY L +L + K A Y P E+ +
Sbjct: 466 DKSHPETNEIYCYLDELMWRCKDAGYAPAPESAM 499
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 5/208 (2%)
Query: 19 NKQFREALDA---FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
+ F +LDA + M +S I P T +V+ ACA L L LG +H +V G+ +
Sbjct: 83 SSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASN 142
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
++ +ALV YAK + + VF ++ ++++ WNS+I G +G A EA+ +F++M
Sbjct: 143 SFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRE 202
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
EP+ TF+SVLSAC+ G ++ G G I V +V++ S+ G +
Sbjct: 203 SGGEPDSATFVSVLSACSQLGSLDLG-CWLHECIVGTGIRMNVVLATSLVNMFSRCGDVG 261
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLH 223
A + S + N V W A++ G +H
Sbjct: 262 RARAVFDSMN-EGNVVSWTAMISGYGMH 288
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 64/273 (23%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
V+SA HL L ++ H +++ G + + L+ + GS+ + +F + + +
Sbjct: 16 VVSAGPHLRRL---QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPD 72
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG----R 162
F +NS+I+ + GF+ +A+ + RM++ + P+ TF SV+ AC L+ G
Sbjct: 73 SFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHS 132
Query: 163 RRFLSMTCGY----------------SITPEVEH-------------YGCMVDLLSKAGL 193
F+S GY S TP V + M+ + GL
Sbjct: 133 HVFVS---GYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGL 189
Query: 194 LEDALEL---IRSSKFQPNAVIW----------GALLGGCKLHRNLEIAHIAVNELMILE 240
+A+E+ +R S +P++ + G+L GC LH + I +N ++
Sbjct: 190 ASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVL--- 246
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273
T L+NM+ SR +V + R +
Sbjct: 247 ------ATSLVNMF---SRCGDVGRARAVFDSM 270
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 203/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y QN + EA+D F M G P+ T+A VLS CA L LD G
Sbjct: 285 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 344
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAV 119
++IH ++ + + +A++ MYA+ GS + +F ++ K W S+I LA
Sbjct: 345 KQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 404
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+ M+ VEP+ +T++ VLSAC+HAG V EG+R + + + I PE+
Sbjct: 405 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 464
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL++AGL +A E IR +P+A+ WG+LL C++H+N E+A +A +L+ +
Sbjct: 465 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 524
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PNNSG + + N+Y+ RW++ +I A KE + K G SW + K++ F A D
Sbjct: 525 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKE-TGFSWTHIRSKIHVFGADDV 583
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D +Y+ +++ E++K A +VP+L+++L
Sbjct: 584 VHPQRDAVYAMAARMWEEIKGAGFVPDLQSVL 615
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 42/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT M+ ++ +F EA+ +M G +P Q T+ VLS+CA A +G
Sbjct: 18 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 77
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK------------------- 101
R++H +V+++G V + +++++MY KCG + + VF +
Sbjct: 78 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHL 137
Query: 102 ------------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISV 148
+ ++++ WN++I G +G +AL +F RM++E ++ P+ T SV
Sbjct: 138 GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 197
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELI-RS 203
LSAC + G V G++ Y + E+ + ++ +K+G +E+A ++ +S
Sbjct: 198 LSACANLGNVRIGKQ-----VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQS 252
Query: 204 SKFQPNAVIWGALLGG 219
+ N + + ALL G
Sbjct: 253 METDLNVISFTALLEG 268
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 53/294 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R I+SW MI Y+QN +AL F+ M S ++PD+ T+ +VLSACA+LG + +
Sbjct: 150 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 209
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-------------DRSLLVFFKLRE-- 104
G+++H Y+++ + + +AL+ YAK GS+ D +++ F L E
Sbjct: 210 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 269
Query: 105 ------------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+++ W ++I G +G EA+ +F MI EPN T
Sbjct: 270 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 329
Query: 147 SVLSACTHAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
+VLS C ++ G+ R L + S ++ + +++G A
Sbjct: 330 AVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVS--------NAIITMYARSGSFPWARR 381
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+ ++ + W +++ H E A + + E M+ +EP+ Y +L
Sbjct: 382 MFDQVCWRKETITWTSMIVALAQHGQGEEA-VGLFEEMLRAGVEPDRITYVGVL 434
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
M+AK G L + VF ++ E++ W ++ GL G EA+ M + P T
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 145 FISVLSAC--THAGLVEEGRR 163
+VLS+C T AG V GR+
Sbjct: 61 LTNVLSSCAVTQAGAV--GRK 79
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 211/329 (64%), Gaps = 3/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ARD+I+W +I+ Y+QN EA+ F+ MK ++ +++T+ VLSACA +GALDLG
Sbjct: 279 MAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLG 338
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++I Y Q GF D+++ +AL+DMYAKCGSL + VF ++ +KN WN++I LA H
Sbjct: 339 KQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASH 398
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EAL++F M E PN +TF+ +LSAC HAGLV EG R F M+ + + P++
Sbjct: 399 GKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKI 458
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL++AG L +A +LI +P+ V GALLG C+ +N++I + ++
Sbjct: 459 EHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILE 518
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
++P+NSG + +YA ++ W + ++R+ M++ GI K PG SWIE+E +++F A D
Sbjct: 519 VDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITK-TPGCSWIEVENHLHEFHAGD 577
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPEL 327
S ++ + + L E+LK YVP++
Sbjct: 578 GLCLDSIDLSNIIDLLYEELKREGYVPKV 606
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P RD++SW +MI Y++ REA++ F EM + G PD++++ +VL AC LG L+L
Sbjct: 177 IPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLEL 236
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + +V++ G ++ YIGSAL+ MYAKCG L + +F + +++ WN++I G A
Sbjct: 237 GRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQ 296
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A EA+++F M + V N +T +VLSAC G ++ G ++ ++
Sbjct: 297 NGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLG-KQIDEYASQRGFQHDIF 355
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L A + + Q N W A++ H
Sbjct: 356 VATALIDMYAKCGSLASAQRVFKEMP-QKNEASWNAMISALASH 398
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
AL F+ M + +SP+ T +CA+L L R H V ++ D + +L+
Sbjct: 100 ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLIT 159
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGV 143
MY++CG + + VF ++ ++L WNS+I G A G A EA+ +F M + EP+ +
Sbjct: 160 MYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEM 219
Query: 144 TFISVLSACTHAGLVEEGR 162
+ +SVL AC G +E GR
Sbjct: 220 SLVSVLGACGELGDLELGR 238
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT M+ Y QN EA+ F +M+N+GI PD T+ +V+S+CA+L +L+ G
Sbjct: 335 MNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEG 394
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H + G + + +ALV +Y KCGS++ S +F ++ + W +++ G A
Sbjct: 395 AQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQF 454
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+E L +F+ M+ +P+ VTFI VLSAC+ AGLV++G + F SM + I P +H
Sbjct: 455 GKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDH 514
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DL S+AG LE+A + I F P+A+ W +LL C+ HRN+EI A L+ LE
Sbjct: 515 YTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLE 574
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+ LL ++YA +W EV +R M++ G+ K PG SWI+ + +V+ F+A D+S
Sbjct: 575 PHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKE-PGCSWIKYKNQVHIFSADDQS 633
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+P SD+IYS L KL+ ++ YVP++ ++L
Sbjct: 634 NPFSDQIYSELEKLNYKMVQEGYVPDMNSVL 664
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 122/219 (55%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ISWT MI ++QN REA+D F EM+ + DQ T +VL+AC + AL G
Sbjct: 234 MQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEG 293
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+++ + ++++GSALVDMY KC S+ + VF K+ KN+ W +++ G +
Sbjct: 294 KQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQN 353
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EA+ +F M +EP+ T SV+S+C + +EEG +F + +
Sbjct: 354 GYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITV 412
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V L K G +ED+ L + + V W AL+ G
Sbjct: 413 SNALVTLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSG 450
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 42/255 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP RD++SW ++I+ Y+ +++ A+N M N + +++ ++T+L + G + L
Sbjct: 101 MPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHL 160
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAK------------------------------- 88
G ++H +V++ GF V++GS LVDMY+K
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
C ++ S +F+ ++EK+ W ++I G +G EA+ +F M EN+E + TF SV
Sbjct: 221 CSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV 280
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----GCMVDLLSKAGLLEDALELIRSS 204
L+AC ++EG++ Y I + + +VD+ K ++ A + R
Sbjct: 281 LTACGGVMALQEGKQ-----VHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKM 335
Query: 205 KFQPNAVIWGALLGG 219
+ N V W A+L G
Sbjct: 336 NCK-NVVSWTAMLVG 349
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
+P+ + ++SA A + R + + Q ++Y + L+ Y+K L
Sbjct: 41 NPEIFLLNNLVSAYAKFDRITYARRVFDQMPQR----NLYSWNTLLSSYSKLACLPEMER 96
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE---NVEPNGVTFISVLSA--- 151
VF + +++ WNS+I A GF +++ ++ M+Y N+ ++ + +L++
Sbjct: 97 VFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQG 156
Query: 152 CTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C H GL G +F + + +P +VD+ SK GL+ A + + N
Sbjct: 157 CVHLGLQVHGHVVKFGFQSYVFVGSP-------LVDMYSKTGLVFCARQAFDEMP-EKNV 208
Query: 211 VIWGALLGG 219
V++ L+ G
Sbjct: 209 VMYNTLIAG 217
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 208/327 (63%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +++W MI Y+QN EAL+ F EM++ I PD T+ +V++A A L + I
Sbjct: 408 KTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWI 467
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ D +V++ +AL+D +AKCG++ + +F ++E+++ WN++I+G +G
Sbjct: 468 HGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHG 527
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F+ M +V+PN +TF+SV++AC+H+GLVEEG F SM Y + P ++HYG
Sbjct: 528 REALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGA 587
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L+DA + I+ +P + GA+LG C++H+N+E+ +EL L+P++
Sbjct: 588 MVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDD 647
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY LL NMYA S W +V ++R AM++ GI+K PG S +E+ +V+ F + +HP
Sbjct: 648 GGYHVLLANMYASASMWDKVARVRTAMEKKGIQK-TPGCSLVELRNEVHTFYSGSTNHPQ 706
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
S IY+ L L +++K A YVP+ ++
Sbjct: 707 SKRIYAYLETLGDEMKAAGYVPDTNSI 733
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 9/226 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T++ Y+QN R A+ +M+ +G PD +T+ +VL A A L AL +G
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + GF+ V + +A++D Y KCGS+ + LVF + +N+ WN++I+G A +
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G + EA A F +M+ E VEP V+ + L AC + G +E GR R L I +V
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEK---KIGFDV 379
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQP----NAVIWGALLGGC 220
++ + SK ++ A + + K + NA+I G GC
Sbjct: 380 SVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGC 425
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 47/260 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +R+++SW TMI Y+QN + EA F +M + G+ P V+M L ACA+LG L+ G
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363
Query: 61 REIH--LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R +H L +IGFD+ V ++L+ MY+KC +D + VF L+ K + WN++I G A
Sbjct: 364 RYVHRLLDEKKIGFDVSVM--NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYA 421
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-------------------------- 152
+G +EAL +F M +++P+ T +SV++A
Sbjct: 422 QNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVF 481
Query: 153 -------THA--GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL--- 200
THA G ++ R+ F M + IT + M+D G +AL+L
Sbjct: 482 VCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNE 536
Query: 201 IRSSKFQPNAVIWGALLGGC 220
+++ +PN + + +++ C
Sbjct: 537 MQNGSVKPNEITFLSVIAAC 556
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ Y++N R+A+ + M+ + P +L L GREIH V+
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI 169
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
GF +++ +A+V++YAKC ++ + +F ++ +++L WN+++ G A +GFA A+
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQ 229
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----GCM 184
+ +M +P+ +T +SVL A + GR GY+ E+ M
Sbjct: 230 VVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS-----IHGYAFRAGFEYMVNVATAM 284
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+D K G + A L+ N V W ++ G
Sbjct: 285 LDTYFKCGSVRSA-RLVFKGMSSRNVVSWNTMIDG 318
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +I+W MI Y N REALD FNEM+N + P+++T +V++AC+H G ++ G
Sbjct: 506 MQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG 565
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLD 93
+ M+ + ++ + A+VD+ + G LD
Sbjct: 566 M-YYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 219/338 (64%), Gaps = 8/338 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-----NSGISPDQVTMATVLSACAHLG 55
MP R++ISW+ +I Y +++EALD F EM+ +SP++ TM+TVLSAC LG
Sbjct: 153 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLG 212
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSII 114
AL+ G+ +H Y+ + G +ID+ +G+AL+DMYAKCGSL+R+ VF L +K++ ++++I
Sbjct: 213 ALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMI 272
Query: 115 EGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
LA++G E +F M N+ PN VTF+ +L AC H GL+ +G+ F MT +
Sbjct: 273 CCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFG 332
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
ITP ++HYGCMVDL ++GL+++A I S +P+ +IWG+LL G ++ +++ A+
Sbjct: 333 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 392
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
L+ L+P NSG LL N+YA+ RW EV +IR M+ GI K+ PG S++E+E V++
Sbjct: 393 KRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGI-KKVPGCSYVEVEGVVHE 451
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
F D+S S+ IY+ L ++ ++L+ A YV + + +L
Sbjct: 452 FVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVL 489
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 203/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y QN + EA+D F M G P+ T+A VLS CA L LD G
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAV 119
++IH ++ + + +A++ MYA+ GS + +F ++ K W S+I LA
Sbjct: 451 KQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+ M+ VEP+ +T++ VLSAC+HAG V EG+R + + + I PE+
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 570
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL++AGL +A E IR +P+A+ WG+LL C++H+N E+A +A +L+ +
Sbjct: 571 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 630
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PNNSG + + N+Y+ RW++ +I A KE + K G SW + K++ F A D
Sbjct: 631 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKE-TGFSWTHIRSKIHVFGADDV 689
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D +Y+ +++ E++K A +VP+L+++L
Sbjct: 690 VHPQRDAVYAMAARMWEEIKGAGFVPDLQSVL 721
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 42/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT M+ ++ +F EA+ +M G +P Q T+ VLS+CA A +G
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 183
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK------------------- 101
R++H +V+++G V + +++++MY KCG + + VF +
Sbjct: 184 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHL 243
Query: 102 ------------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISV 148
+ ++++ WN++I G +G +AL +F RM++E ++ P+ T SV
Sbjct: 244 GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 303
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELI-RS 203
LSAC + G V G++ Y + E+ + ++ +K+G +E+A ++ +S
Sbjct: 304 LSACANLGNVRIGKQ-----VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQS 358
Query: 204 SKFQPNAVIWGALLGG 219
+ N + + ALL G
Sbjct: 359 METDLNVISFTALLEG 374
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 34/197 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R I+SW MI Y+QN +AL F+ M S ++PD+ T+ +VLSACA+LG + +
Sbjct: 256 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-------------DRSLLVFFKLRE-- 104
G+++H Y+++ + + +AL+ YAK GS+ D +++ F L E
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375
Query: 105 ------------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+++ W ++I G +G EA+ +F MI EPN T
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435
Query: 147 SVLSACTHAGLVEEGRR 163
+VLS C ++ G++
Sbjct: 436 AVLSVCASLACLDYGKQ 452
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
+V+ ++L+ M+AK G L + VF ++ E++ W ++ GL G EA+ M
Sbjct: 97 NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156
Query: 135 YENVEPNGVTFISVLSAC--THAGLVEEGRR 163
+ P T +VLS+C T AG V GR+
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAV--GRK 185
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK----CGSLD--RSLLV 98
A +L C GR IH ++ G Y+ + L+ Y + G L R L
Sbjct: 30 ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
L +N+F WNS++ A G +A +F M E + V++ ++ AG
Sbjct: 90 EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM----PERDAVSWTVMVVGLNRAGRF 145
Query: 159 EEGRRRFLSMTC-GYSIT 175
E + L MT G++ T
Sbjct: 146 GEAIKTLLDMTADGFTPT 163
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 205/334 (61%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R I++W +MI+ Y QN EA++ FN+M+ S + PD T +VLSAC+ LG+LD G
Sbjct: 169 MPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ G ++V + ++LV+M+++CG + R+ VF+ + E N+ W ++I G +H
Sbjct: 229 CWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMH 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ +F RM V PN VTF++VLSAC HAGL++EGR F SM Y + P VEH
Sbjct: 289 GYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEH 348
Query: 181 YGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ CMVD+ + GLL +A + ++ S + P +W A+LG CK+H+N ++ L+
Sbjct: 349 HVCMVDMFGRGGLLNEAYQFVKGLNSDELVP--AVWTAMLGACKMHKNFDLGVEVAENLI 406
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
EP N G+ LL NMYA R V +R M + G++K+ G S I+++ + Y F+
Sbjct: 407 NAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQV-GYSTIDVDNRSYLFSMG 465
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DKSHP ++EIY L +L + K A Y P E+ +
Sbjct: 466 DKSHPETNEIYCFLDELIWRCKDAGYAPVPESAM 499
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 5/208 (2%)
Query: 19 NKQFREALDA---FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
+ +F +LDA + M S I P T +V+ ACA L L +G +H +V G+ D
Sbjct: 83 SSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASD 142
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
++ +AL+ YAK + + VF ++ ++++ WNS+I G +G A+EA+ +F++M
Sbjct: 143 SFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRE 202
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
VEP+ TF+SVLSAC+ G ++ G G IT V +V++ S+ G +
Sbjct: 203 SRVEPDSATFVSVLSACSQLGSLDFG-CWLHDCIVGSGITMNVVLATSLVNMFSRCGDVG 261
Query: 196 DALELIRSSKFQPNAVIWGALLGGCKLH 223
A + S + N V+W A++ G +H
Sbjct: 262 RA-RAVFYSMIEGNVVLWTAMISGYGMH 288
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 114/267 (42%), Gaps = 64/267 (23%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
V+SA HL L ++ H +++ G + + L+ + GS+ + +F + + +
Sbjct: 16 VVSAGPHLRRL---QQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPD 72
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG----R 162
F +NS+I+ + GF+ +A+ + RM+ + P+ TF SV+ AC L+ G
Sbjct: 73 SFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHS 132
Query: 163 RRFLSMTCGY----------------SITPEVEH-------------YGCMVDLLSKAGL 193
F+S GY S TP V + M+ + GL
Sbjct: 133 HVFVS---GYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGL 189
Query: 194 LEDALEL---IRSSKFQPNAVIW----------GALLGGCKLHRNLEIAHIAVNELMILE 240
+A+E+ +R S+ +P++ + G+L GC LH + + I +N ++
Sbjct: 190 ANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVL--- 246
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIR 267
T L+NM+ SR +V + R
Sbjct: 247 ------ATSLVNMF---SRCGDVGRAR 264
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 205/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++I+SW TMI YSQN EAL F +M+ + PD VTMA VL ACA L AL+ G
Sbjct: 421 LPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKG 479
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH ++++ G+ D+++ ALVDMY KCG L + +F + +K++ W +I G +H
Sbjct: 480 REIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMH 539
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA++ F++M +EP +F S+L ACTH+GL++EG + F SM +I P++EH
Sbjct: 540 GFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEH 599
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL ++G L A + I + +P+A IWGALL GC++H ++E+A + LE
Sbjct: 600 YACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELE 659
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+ Y LL N+YAE +W EV KI+ + + G+ K G SWIE++ K F A D S
Sbjct: 660 PENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGL-KNDQGCSWIEVQGKFNIFFAGDTS 718
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + I S L KL ++ Y +++ L
Sbjct: 719 HPQAKMIDSLLRKLTMKMNRGGYSNKIKYAL 749
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 2/216 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW +MI+ + N R L+ F +M N G+ D T+ VL ACA++G L LGR +
Sbjct: 222 RDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRAL 281
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y ++ GF V + L+DMY+KCG+L+ + VF K+ E + W SII G
Sbjct: 282 HAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLH 341
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+EA+ +FD M + + P+ SV+ AC + +++GR + ++ +
Sbjct: 342 YEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIK-KNNMGSNLPVSNA 400
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++++ +K G +E+A LI S N V W ++GG
Sbjct: 401 LMNMYAKCGSMEEA-NLIFSQLPVKNIVSWNTMIGG 435
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 138/254 (54%), Gaps = 9/254 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M I+SWT++I + + EA+ F+EM++ G+ PD + +V+ ACA +LD G
Sbjct: 320 MGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKG 379
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H ++ + ++ + +AL++MYAKCGS++ + L+F +L KN+ WN++I G + +
Sbjct: 380 REVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQN 439
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+EAL +F M + ++P+ VT VL AC +E+GR + GY
Sbjct: 440 SLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL--- 495
Query: 180 HYGC-MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
H C +VD+ K GLL A +L + + ++W ++ G +H + A ++ +
Sbjct: 496 HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRV 554
Query: 239 --LEPNNSGYCTLL 250
+EP S + ++L
Sbjct: 555 AGIEPEESSFTSIL 568
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 103/197 (52%), Gaps = 3/197 (1%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W +++ Y++ +RE++ F +M+ GI D T VL A + + +H
Sbjct: 123 IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHG 182
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
YV+++GF + ++L+ Y KCG ++ + ++F +L ++++ WNS+I G ++GF+
Sbjct: 183 YVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRN 242
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCM 184
L F +M+ V+ + T ++VL AC + G + GR + G+S V +
Sbjct: 243 GLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFS--GGVMFNNTL 300
Query: 185 VDLLSKAGLLEDALELI 201
+D+ SK G L A E+
Sbjct: 301 LDMYSKCGNLNGANEVF 317
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T +VL CA L +L+ G+ +H + G ID +G+ LV MY CG L + +F +
Sbjct: 59 TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+F WN ++ A G E++ +F++M + + TF VL + V E +
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLL----SKAGLLEDALELIRSSKFQPNAVIWGALLG 218
R GY + Y +V+ L K G +E A ++ + V W +++
Sbjct: 179 R-----VHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESA-RILFDELSDRDVVSWNSMIS 232
Query: 219 GCKLH 223
GC ++
Sbjct: 233 GCTMN 237
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 203/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y QN + EA+D F M G P+ T+A VLS CA L LD G
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAV 119
++IH ++ + + +A++ MYA+ GS + +F ++ K W S+I LA
Sbjct: 451 KQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+ M+ VEP+ +T++ VLSAC+HAG V EG+R + + + I PE+
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMS 570
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL++AGL +A E IR +P+A+ WG+LL C++H+N E+A +A +L+ +
Sbjct: 571 HYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSI 630
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PNNSG + + N+Y+ RW++ +I A KE + K G SW + K++ F A D
Sbjct: 631 DPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKE-TGFSWTHIRSKIHVFGADDV 689
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D +Y+ +++ E++K A +VP+L+++L
Sbjct: 690 VHPQRDAVYAMAARMWEEIKGAGFVPDLQSVL 721
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 127/256 (49%), Gaps = 42/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT M+ ++ +F EA+ +M G +P Q T+ VLS+CA A +G
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 183
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK------------------- 101
R++H +V+++G V + +++++MY KCG + + VF +
Sbjct: 184 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHL 243
Query: 102 ------------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISV 148
+ +++ WN++I G +G +AL +F RM++E ++ P+ T SV
Sbjct: 244 GRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSV 303
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEH----YGCMVDLLSKAGLLEDALELI-RS 203
LSAC + G V G++ Y + E+ + ++ +K+G +E+A ++ +S
Sbjct: 304 LSACANLGNVRIGKQ-----VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQS 358
Query: 204 SKFQPNAVIWGALLGG 219
+ N + + ALL G
Sbjct: 359 METDLNVISFTALLEG 374
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 34/197 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R I+SW MI Y+QN +AL F+ M S ++PD+ T+ +VLSACA+LG + +
Sbjct: 256 MPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-------------DRSLLVFFKLRE-- 104
G+++H Y+++ + + +AL+ YAK GS+ D +++ F L E
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375
Query: 105 ------------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+++ W ++I G +G EA+ +F MI EPN T
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435
Query: 147 SVLSACTHAGLVEEGRR 163
+VLS C ++ G++
Sbjct: 436 AVLSVCASLACLDYGKQ 452
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
+V+ ++L+ M+AK G L + VF ++ E++ W ++ GL G EA+ M
Sbjct: 97 NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156
Query: 135 YENVEPNGVTFISVLSAC--THAGLVEEGRR 163
+ P T +VLS+C T AG V GR+
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAV--GRK 185
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK----CGSLD--RSLLV 98
A +L C GR IH ++ G Y+ + L+ Y + G L R L
Sbjct: 30 ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
L +N+F WNS++ A G +A +F M E + V++ ++ AG
Sbjct: 90 EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM----PERDAVSWTVMVVGLNRAGRF 145
Query: 159 EEGRRRFLSMTC-GYSIT 175
E + L MT G++ T
Sbjct: 146 GEAIKTLLDMTADGFTPT 163
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 185/286 (64%), Gaps = 1/286 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW++MI+ YSQ F +AL+ F +M+ + + PD + +A+V+S+CAHLGALDLG
Sbjct: 745 IPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 804
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV + D + ++L+DMY KCGS +L VF +++EK+ WNSII GLA +
Sbjct: 805 KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANN 864
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF E+L +F M+ E PNGVTF+ VL AC +A LVEEG F SM YS+ P+++H
Sbjct: 865 GFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH 924
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AG LE AL I P+ V+W LLG C H ++ IA I +L LE
Sbjct: 925 YGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELE 984
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
P+NSG TLL N YA RW+E +R M + + K PG S +E
Sbjct: 985 PSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRK-SPGCSAVE 1029
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 165/268 (61%), Gaps = 1/268 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW+ MI Y++ + EA+ F M GISP ++T+ V+ A +++G + +G
Sbjct: 181 MPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIG 240
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKNLFCWNSIIEGLAV 119
+H Y + G DV +G++L+D+YAK GS+ SL VF + L +NL W SII G A+
Sbjct: 241 EALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAM 300
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + +A+ +F M + PN +TF+SVL AC+H GLVE+G F SM Y+I P+V+
Sbjct: 301 HGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVK 360
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GC++D+L +AG L +A ++IR + NA +W LLG C + +E+ + +++ L
Sbjct: 361 HFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILAL 420
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIR 267
E G +L NM E+ R+++ +R
Sbjct: 421 EREFGGDFVVLSNMLTELRRFSDAEIVR 448
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 45/256 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW ++I YSQ +F++ L F M+N G+ D+VTM V+SAC LG +
Sbjct: 613 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA 672
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR----------------- 103
+ Y+ ++DVY+G+ LVD + + G L + VFF ++
Sbjct: 673 DYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKG 732
Query: 104 --------------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+K+L W+S+I G + +AL +F +M V+P+ + SV+
Sbjct: 733 QDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVV 792
Query: 150 SACTHAGLVEEGR------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
S+C H G ++ G+ RR +I + ++D+ K G ++AL++ +
Sbjct: 793 SSCAHLGALDLGKWVHEYVRR-------NNIKADTIMENSLIDMYMKCGSAKEALQVFKE 845
Query: 204 SKFQPNAVIWGALLGG 219
K + + + W +++ G
Sbjct: 846 MK-EKDTLSWNSIIIG 860
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 113/213 (53%), Gaps = 6/213 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I +Q+ +A+ + + + G+ PD +T +L ACA + AL+ G ++H ++
Sbjct: 520 WNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHIT 579
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G D+++ ++L+ +YA CG+L + VF ++ K++ WNS+I G + + LA
Sbjct: 580 KLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILA 639
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAG--LVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+F M E V+ + VT I V+SACT G + + R++ Y I +V +VD
Sbjct: 640 LFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIE---DYCIEVDVYLGNTLVD 696
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ G L+ A ++ + K + N V A++
Sbjct: 697 YFGRRGQLQSAEKVFFNMKVR-NIVTMNAMIAA 728
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 35/252 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R W ++ YS ++AL F + + D L ACA LG ++
Sbjct: 53 RRPTPWHALLKAYSHGPHPQDALQLFRHARWHA-ADDTYAFTFALKACAGLGWPRCCMQL 111
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H V++ GF+ Y+ +ALV++Y CG L S + F ++ KN WN +I G A
Sbjct: 112 HGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEV 171
Query: 119 ---------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSAC 152
+ G+ EA+A+F RM+ E + P+ +T ++V+ A
Sbjct: 172 EYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPAL 231
Query: 153 THAGLVEEGRRRFLSMTC-GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
++ G + G L C + +V ++DL +K G ++++L + + N V
Sbjct: 232 SNVGKILIGEA--LHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLV 289
Query: 212 IWGALLGGCKLH 223
W +++ G +H
Sbjct: 290 SWTSIISGFAMH 301
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++ F WN +I GLA +A+A + + + P+ +TF +L AC
Sbjct: 508 VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 567
Query: 158 VEEGRR 163
+ EG +
Sbjct: 568 LNEGEQ 573
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 209/325 (64%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDII++ +M+T Y + Q REAL F M+ + D T+ +L+ACA LGAL G
Sbjct: 332 MEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG 391
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + Q + D+Y+G+AL+DMY KCG +D + +VF ++ ++++ W ++I GLA +
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL F +M + +PN V++I+VL+AC+H+ L+ EGR F M Y+I P++EH
Sbjct: 452 GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH 511
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL ++GLL++A++L+++ QPNAVIW ++L C++H+++++A A L+ LE
Sbjct: 512 YGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLE 571
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ G L N+Y + +W +KIR+ M+E + K+ G S I + +V++F SDKS
Sbjct: 572 PDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV-KKTAGYSSITVAGQVHKFVVSDKS 630
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI + L ++ +LK Y P
Sbjct: 631 HPRILEIIAMLEEISHRLKSLGYSP 655
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ISWT++I YS+ + REA+ F M + GI+PD+VT+ VLSACA L L+LGR
Sbjct: 200 PVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGR 259
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+HL V + G + AL+DMYAKCG + VF L R WN+II+G H
Sbjct: 260 SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKH 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
G A ++FD M ++ +TF S+++ H+G + E F+SM
Sbjct: 320 GHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLFMSM 363
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 46/278 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVT----------------- 43
MP + T + C F M+ +G+ PD T
Sbjct: 63 MPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSL 122
Query: 44 ----------MATVLSACAHLGALDLGREIHLYVMQIGFDID-------VYIGSA----- 81
+ T+L + A + L IH+Y+ ++G D +++ A
Sbjct: 123 LLCTMLHAACLRTMLPSAAPFVSNSL---IHMYI-RLGLAADARRAFDEIHVKDAVAWTM 178
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
L+ AK G L + L+ + +++ W S+I + A EA+ F M+ + P+
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPD 238
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH-YGCMVDLLSKAGLLEDALEL 200
VT I+VLSAC +E GR L + P E+ ++D+ +K G A ++
Sbjct: 239 EVTVIAVLSACAKLKDLELGRS--LHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQV 296
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ P W A++ G H ++++A +E+ +
Sbjct: 297 FDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEV 334
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 209/334 (62%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP R+ +SW M+ Y ++ + EAL FN+M + + P++ + ++LSACAHLGALD
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH+Y+ + + I +AL+DMYAKCG +D + VF L +++L W S+I GL++
Sbjct: 309 GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSM 368
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG E L F M+ E +P+ +T + VL+ C+H+GLVEEG F M + I P++E
Sbjct: 369 HGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC++DLL +AG LE A E I+S +P+ V W ALL C++H ++++ +N + L
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAEL 488
Query: 240 EPNNSGYCTLLL-NMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
P + G +LL N+YA + +W VTK+R AM + G E CPG SWIE++ V++F A+D
Sbjct: 489 CPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEG-CPGCSWIEIDGVVHEFLAAD 547
Query: 299 KSHPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
K HP EI L+++ ++ + YVP + +L
Sbjct: 548 KLHPRISEINKKLNEVLRRISIEGGYVPSTKQVL 581
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 120/261 (45%), Gaps = 55/261 (21%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACA-HLGALDLGREI 63
I W MI YS+ +E+L F++M G S D+ T V +AC+ H G +
Sbjct: 120 IIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENV 179
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG-- 121
H V++ G++ D+++G++LV+MY+ + + VF ++ ++++ W S+++G A+ G
Sbjct: 180 HGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEL 239
Query: 122 -----------------------------FAHEALAMFDRMI-YENVEPNGVTFISVLSA 151
F +EAL F+ M+ ++ V+PN +S+LSA
Sbjct: 240 VRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSA 299
Query: 152 CTHAGLVEEGR---------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
C H G +++G+ R LS + ++D+ +K G + D +
Sbjct: 300 CAHLGALDQGKWIHVYIDKNRILLSSNISTA----------LIDMYAKCGRI-DCARRVF 348
Query: 203 SSKFQPNAVIWGALLGGCKLH 223
+ + + W +++ G +H
Sbjct: 349 DGLHKRDLLTWTSMISGLSMH 369
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 203/324 (62%), Gaps = 1/324 (0%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
SW +I QN + +AL+ + M+NSG P+Q+T+ +VL AC +L +L G++IH Y+
Sbjct: 282 SWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYI 341
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ F D+ +ALV MYAKCG L+ S VF + +++ WN++I ++HG EAL
Sbjct: 342 FRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEAL 401
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+F M+ V PN VTF VLS C+H+ LV+EG F SM+ +S+ P+ +H+ CMVD+
Sbjct: 402 LLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDV 461
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
LS+AG LE+A E I+ +P A WGALLGGC++++N+E+ IA N L +E +N G
Sbjct: 462 LSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNY 521
Query: 248 TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEI 307
LL N+ W+E ++ R M++ G+ K PG SWI++ +V+ F DKS+ SDEI
Sbjct: 522 VLLSNILVSAKLWSEASETRKLMRDRGVTKN-PGCSWIQVRNRVHTFVVGDKSNDQSDEI 580
Query: 308 YSSLSKLDEQLKLASYVPELEAML 331
Y L + E++++A Y+P + +L
Sbjct: 581 YRFLDYMGEKMRIAGYLPNTDFVL 604
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISWT+M +CY REAL AF +M +G P+ VT++++L AC L L G
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSG 198
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H +V++ G +V++ SALV+MYA C S+ ++ LVF + ++ WN +I ++
Sbjct: 199 REVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLN 258
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
+ L++F RM+ E V N ++ +V+ C G E+
Sbjct: 259 KECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEK 298
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P D+ +WT +I+ +++ + EA+ +N+ ++ + PD++ + +V ACA L +
Sbjct: 37 IPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMN 96
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ +H ++ GF DV +G+AL+DMY KC + + LVF + +++ W S+
Sbjct: 97 AKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVN 156
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G EAL F +M PN VT S+L ACT ++ GR
Sbjct: 157 CGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR 199
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW TMI S + EAL F EM +SG+ P+ VT VLS C+H +D G
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEG 435
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
I + + + D S +VD+ ++ G L+ + K+ E W +++ G
Sbjct: 436 LLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCR 495
Query: 119 VH 120
V+
Sbjct: 496 VY 497
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + +Y+ G L R+ +F K+ + +L W +I L HG + EA+ ++ ++
Sbjct: 12 HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71
Query: 137 N-VEPNGVTFISVLSACTHAGLVEEGRR 163
N VEP+ + +SV AC V +R
Sbjct: 72 NCVEPDKLLLLSVAKACASLRDVMNAKR 99
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 209/325 (64%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDII++ +M+T Y + Q REAL F M+ + D T+ +L+ACA LGAL G
Sbjct: 332 MEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG 391
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + Q + D+Y+G+AL+DMY KCG +D + +VF ++ ++++ W ++I GLA +
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL F +M + +PN V++I+VL+AC+H+ L+ EGR F M Y+I P++EH
Sbjct: 452 GMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH 511
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL ++GLL++A++L+++ QPNAVIW ++L C++H+++++A A L+ LE
Sbjct: 512 YGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLE 571
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ G L N+Y + +W +KIR+ M+E + K+ G S I + +V++F SDKS
Sbjct: 572 PDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV-KKTAGYSSITVAGQVHKFVVSDKS 630
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI + L ++ +LK Y P
Sbjct: 631 HPRILEIIAMLEEISHRLKSLGYSP 655
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ISWT++I YS+ + REA+ F M + GI+PD+VT+ VLSACA L L+LGR
Sbjct: 200 PVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGR 259
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+HL V + G + AL+DMYAKCG + VF L R WN+II+G H
Sbjct: 260 SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKH 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
G A ++FD M ++ +TF S+++ H+G + E F+SM
Sbjct: 320 GHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLFMSM 363
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 46/278 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVT----------------- 43
MP + T + C F M+ +G+ PD T
Sbjct: 63 MPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSL 122
Query: 44 ----------MATVLSACAHLGALDLGREIHLYVMQIGFDID-------VYIGSA----- 81
+ T+L + A + L IH+Y+ ++G D +++ A
Sbjct: 123 LLCTMLHAACLRTMLPSAAPFVSNSL---IHMYI-RLGLAADARRAFDEIHVKDAVAWTM 178
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
L+ AK G L + L+ + +++ W S+I + A EA+ F M+ + P+
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPD 238
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH-YGCMVDLLSKAGLLEDALEL 200
VT I+VLSAC +E GR L + P E+ ++D+ +K G A ++
Sbjct: 239 EVTVIAVLSACAKLKDLELGRS--LHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQV 296
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ P W A++ G H ++++A +E+ +
Sbjct: 297 FDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEV 334
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 210/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D+ISW ++IT YSQN EA+D ++ M+ SG P+Q T ++L+A + LGAL
Sbjct: 403 LPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQ 462
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G + H +++ D+++ + LVDMY KCG L +L +F+++ ++ WN+II +
Sbjct: 463 GMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGL 522
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG+ +A+ +F M E V+P+ +TF+S+LSAC+H+GLV+EG+ F M Y I P ++
Sbjct: 523 HGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLK 582
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL +AG LE A +++ +P+ +WGALLG C++H N+E+ + L+ +
Sbjct: 583 HYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKV 642
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
E N GY LL N+YA++ W V ++R ++ G+ K+ PG S IE+++K+ F ++
Sbjct: 643 ESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGL-KKTPGWSSIEVDKKIDVFYTGNQ 701
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP +EIYS L L ++K YVP+ +L
Sbjct: 702 THPKCEEIYSELRNLTAKMKSIGYVPDYNFVL 733
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI+SW +++ + QNK+ AL +N+M + G+ PD +T+ ++ S A LG
Sbjct: 301 MKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSS 360
Query: 61 REIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R IH +V + F D+ +G+A++DMYAK G +D + VF L K++ WNS+I G +
Sbjct: 361 RSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQ 420
Query: 120 HGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G A+EA+ ++ M Y PN T++S+L+A + G +++G + + + + ++
Sbjct: 421 NGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDI 479
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
C+VD+ K G L DAL L Q ++V W A++ LH
Sbjct: 480 FVSTCLVDMYGKCGKLADALSLFYEVPHQ-SSVSWNAIISCHGLH 523
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDL 59
+ +D+ +W +MI+ Y++ F A+D FNE + S + D T V+ AC G LD
Sbjct: 101 IQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDD 157
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR++H V+++GF+ DVYI ++ + Y++ G + + +F + +++ WN++I G +
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G EAL +FD M +++V + VT S+L C + G L + E +
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG---VLIHVYAIKLGLEFD 274
Query: 180 HYGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ C ++++ +K G L A + K + + V W +LL + ++ IA N++
Sbjct: 275 LFVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKM 332
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 119/221 (53%), Gaps = 5/221 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI +W MI+ + N + EAL+ F+EM+ +S D VT++++L C L + G
Sbjct: 200 MMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG 259
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH+Y +++G + D+++ +AL++MYAK G L + +F +++ +++ WNS++ +
Sbjct: 260 VLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQN 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG--LVEEGRRRFLSMTCGYSITPEV 178
AL ++++M V P+ +T +S+ S G L F++ C + ++
Sbjct: 320 KKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWF--LHDI 377
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G ++ A ++ + + + W +L+ G
Sbjct: 378 ALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITG 417
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 12/176 (6%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
L +++H ++ G +++ + L++ YA G + + L F +++ K+++ WNS+I A
Sbjct: 58 LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYA 117
Query: 119 VHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRF-----LSMTCGY 172
G H A+ F+ + + ++ + TF V+ AC G +++GR+ L C
Sbjct: 118 RIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFECDV 174
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
I H+ +S A L D + +IR NA+I G L G K+ LE+
Sbjct: 175 YIAASFIHFYSRFGFVSLACNLFDNM-MIRDIG-TWNAMISGFYLNG-KVAEALEV 227
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 214/340 (62%), Gaps = 14/340 (4%)
Query: 5 DIISWTTMITCYSQNKQF-------------REALDAFNEMKNSGISPDQVTMATVLSAC 51
D+ +W TM+ Y+Q+ EAL F +M+ S I P++VT+ ++SAC
Sbjct: 170 DLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISAC 229
Query: 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111
++LGAL G H YV++ ++ ++G+ALVDMY+KCG L+ + +F +L +++ FC+N
Sbjct: 230 SNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYN 289
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
++I G AVHG ++AL ++ M E++ P+G T + + AC+H GLVEEG F SM
Sbjct: 290 AMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGV 349
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
+ + P++EHYGC++DLL +AG L++A E ++ +PNA++W +LLG KLH NLE+
Sbjct: 350 HGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEA 409
Query: 232 AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKV 291
A+ L+ LEP SG LL NMYA + RW +V ++R+ MK+ G++K PG S +E+ +
Sbjct: 410 ALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDK-LPGFSLVEINGAM 468
Query: 292 YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
++F DK+HP S EIYS + +++ +L + P +L
Sbjct: 469 HEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVL 508
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 113/243 (46%), Gaps = 26/243 (10%)
Query: 1 MPARDIISWTTMITCYSQNK-QFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALD 58
+P + + T+I+ + + Q A +N + + + P+ T ++ ACA L
Sbjct: 62 IPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQ 121
Query: 59 LGREIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
G +H +V++ + D ++ ++L++ YAK G L S +F ++ E +L WN+++
Sbjct: 122 HGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY 181
Query: 118 AVHG-------------FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164
A + EAL +F M ++PN VT ++++SAC++ G + +G
Sbjct: 182 AQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQG--- 238
Query: 165 FLSMTCGYSITPEVEHY----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ GY + ++ +VD+ SK G L A +L + + A++GG
Sbjct: 239 --AWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELS-DRDTFCYNAMIGGF 295
Query: 221 KLH 223
+H
Sbjct: 296 AVH 298
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD + MI ++ + +AL+ + MK + PD T+ + AC+H G ++ G EI
Sbjct: 283 RDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEI 342
Query: 64 HLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAVHG 121
+ + G + + L+D+ + G L + + K N W S++ +HG
Sbjct: 343 FESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHG 402
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 185/283 (65%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+RD+ISWT+MI YS KQ EA+ F EM S + PD++T+AT LSACAHLG+LD G
Sbjct: 306 MPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAG 365
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + DV++G++L+DMY KCG ++++L VF ++ ++ W SII GLAV+
Sbjct: 366 EAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVN 425
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA AL +FD+M+ E + P TF+ VL AC H GLV++G F SM Y + PE++H
Sbjct: 426 GFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKH 485
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL ++G L+ A I+ P+ VIW LL CKLH NL +A I +L++L+
Sbjct: 486 YGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLD 545
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS 283
P+N+G L + YA RW +V KIR M+ ++K C SS
Sbjct: 546 PSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSS 588
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 143/285 (50%), Gaps = 37/285 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I Y Q +F++ LD F EM+ + D VTM +SA L ++G
Sbjct: 174 MLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
+ Y+ + G +D+Y+G+ L+DMY + G +D + VF++++EKN+ WN++I G A
Sbjct: 234 DYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKV 293
Query: 119 ------------------------VHGFA-----HEALAMFDRMIYENVEPNGVTFISVL 149
+ G++ EA+ +F M+ V+P+ +T + L
Sbjct: 294 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL 353
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC H G ++ G + I +V ++D+ K G++E AL++ K + +
Sbjct: 354 SACAHLGSLDAGEAVH-DYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR-D 411
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLLL 251
+V W +++ G ++ E A + V + M+ E P + + +LL
Sbjct: 412 SVSWTSIISGLAVNGFAESA-LNVFDQMLKEGICPTHGTFVGVLL 455
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 2/231 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ W MI S++ + +A+ +N M GI +T + +CA + + G+ + +
Sbjct: 78 LLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRV 137
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ M++GF+ +++ +AL+ MY G L + VF + E+++ WNSII G +
Sbjct: 138 HSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKK 197
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
L +F M NV + VT + +SA E G + + + ++ ++
Sbjct: 198 VLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG-DYLVKYIDEHGVVVDLYLGNTLI 256
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
D+ + G+++ A + K + N V W A++ G NL A NE+
Sbjct: 257 DMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNLVAAKKLFNEM 306
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA-KCGSLDRSLLVFFK 101
T + A ++ +L+ +E+H +++ ID S ++ YA SL ++ VF +
Sbjct: 13 TFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQ 72
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
++ L WN +I GL+ ++A+ ++ M Y+ ++ + +TFI + +C V +G
Sbjct: 73 IQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQG 132
Query: 162 RR-RFLSMTCGY 172
+ R SM G+
Sbjct: 133 QMVRVHSMKLGF 144
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 203/319 (63%), Gaps = 2/319 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +W +++ +NKQ+ A+ FNEM+ S + PD T+ +L+AC+ L + G+++H
Sbjct: 506 NVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVH 565
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y ++ G+D D +IG+ LVDMYAKCGS+ V+ K+ NL C N+++ A+HG
Sbjct: 566 AYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGE 625
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E + +F RM+ V P+ VTF+SVLS+C HAG ++ G F M Y+ITP ++HY CM
Sbjct: 626 EGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLMET-YNITPTLKHYTCM 684
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLLS+AG L++A +LI++ + ++V W ALLGGC +H+ + + IA +L+ LEP+N+
Sbjct: 685 VDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNT 744
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA RW ++ K R M + G++K PG SWIE V+ F ASDKSH
Sbjct: 745 GNYVLLANLYASAGRWHDLAKTRELMNDKGMQKS-PGCSWIEDRDGVHIFLASDKSHQRV 803
Query: 305 DEIYSSLSKLDEQLKLASY 323
+EIY L L + +++ +
Sbjct: 804 EEIYFMLDNLTKFIRIKEH 822
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 8/224 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M +++ SWT ++ + F + F E G+ D VL+ C LG L+
Sbjct: 92 MTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLE 151
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LGR++H V++ GF +VY+G+AL+DMY KCGSLD + V + +K+ WNSII
Sbjct: 152 LGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACV 211
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G +EAL + + M+ +EPN VT+ +V+ + E F M G + P+
Sbjct: 212 ANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMV-GAGVAPDA 270
Query: 179 EHYGCMVDLLSKAGLLEDALEL----IRSSKFQPNAVIWGALLG 218
++ S+ L EL +R F N + AL+G
Sbjct: 271 RTLASVLPACSRMKWLFVGKELHGYIVRHELFS-NGFVANALVG 313
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW MI+ + N F +AL F ++ GI PD T+ ++L+ A + + G+EI
Sbjct: 369 RDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEI 428
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G + ++G ALV+MY KC + + + F ++ E++ WN++I G A
Sbjct: 429 HSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQI 488
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
+ + +RM + EPN T+ S+L AGLVE
Sbjct: 489 GKIRELVERMKSDGFEPNVYTWNSIL-----AGLVE 519
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 132/310 (42%), Gaps = 74/310 (23%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++W+ +I +S N E+++ F M +G++PD T+A+VL AC+ + L +G+E+H
Sbjct: 234 NVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELH 293
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL---------------------- 102
Y+++ + ++ +ALV MY +CG + + +F K
Sbjct: 294 GYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVG 353
Query: 103 REKNLF-------------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+ K LF WN +I G + +AL +F ++ E +EP+ T S+L
Sbjct: 354 KAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSIL 413
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKA----------------- 191
+ + +G+ +++ G V G +V++ K
Sbjct: 414 TGFADMTCIRQGKEIHSIAIVKGLQSNSFVG--GALVEMYCKCNDIIAAQMAFDEISERD 471
Query: 192 -----------------GLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
G + + +E ++S F+PN W ++L G ++ ++A N
Sbjct: 472 TSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFN 531
Query: 235 ELMI--LEPN 242
E+ + L P+
Sbjct: 532 EMQVSSLRPD 541
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 87/181 (48%), Gaps = 7/181 (3%)
Query: 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK 101
T +T+L + +L LG+++H + ++ GF ++ + L+ MY+ S + + +F K
Sbjct: 35 TTYSTILQSS---NSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDK 91
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV--EPNGVTFISVLSACTHAGLVE 159
+ KNL W +++ G ++ +F+ + + + + + F VL+ C G +E
Sbjct: 92 MTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLE 151
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GR+ M + V ++D+ K G L++A +++ Q + V W +++
Sbjct: 152 LGRQVH-GMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMT-QKDCVSWNSIITA 209
Query: 220 C 220
C
Sbjct: 210 C 210
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 196/325 (60%), Gaps = 2/325 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + + SW MI+ Y+QN A+ F EM +SP+ VT+ ++LSACA LGAL +G+
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGK 435
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H + + +VY+ +ALVDMYAKCGS+ + +F + +KN+ WN++I G +HG
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M+ + P GVTF+S+L AC+H+GLV EG F SM Y P EHY
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVD+L +AG L +ALE I +P +WGALLG C +H+N E+A++A L L+P
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDP 615
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N GY LL N+Y+ + + +R +K+ + K PG + IE++ + Y F + D+SH
Sbjct: 616 ENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAK-TPGCTLIEIDDQQYVFTSGDRSH 674
Query: 302 PASDEIYSSLSKLDEQLKLASYVPE 326
P + I+ L KL +++ A Y E
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAE 699
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD + W TMI+ +S+N F +++ F +M + G+S D T+ATVL+A A L LG
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I + G DVY+ + L+ +Y+KCG + ++F ++ + +L +N++I G +
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A+ +F ++ N T + ++ ++ R + LS+ G + P V
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVS 353
Query: 180 -----------------------------HYGCMVDLLSKAGLLEDALELIRS--SKFQP 208
+ M+ ++ GL + A+ L + + P
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP 413
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLLLNMYAEVSRWAEVTKI 266
N V ++L C L I V+ L+ E +N T L++MYA+ E ++
Sbjct: 414 NPVTVTSILSACAQLGALSIGK-WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+IS+ MI+ Y+ N + A+ F E+ SG + T+ ++ L L R I
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQ 338
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++IG + + +AL +Y + + + +F + EK+L WN++I G +G
Sbjct: 339 NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTD 398
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+++F M+ + + PN VT S+LSAC G + G+ + + V +
Sbjct: 399 RAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTAL 456
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
VD+ +K G + +A +L N V W A++ G LH
Sbjct: 457 VDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLH 494
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 114/243 (46%), Gaps = 21/243 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+ + +I +S N + ++ + + K + + PD T A +SA + L +G +
Sbjct: 76 DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + G ++++GSA+VD+Y K + + VF + E++ WN++I G + + +
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS---ITPEVEH 180
+++ +F M+ + + T +VL+A A L E R + + C S + +V
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAV--AELQE--YRLGMGIQCLASKKGLHSDVYV 251
Query: 181 YGCMVDLLSKAG------LLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
++ L SK G +L D ++ QP+ + + A++ G + E A
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQID-------QPDLISYNAMISGYTFNHETESAVTLFR 304
Query: 235 ELM 237
EL+
Sbjct: 305 ELL 307
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W MIT Y + +EAL F EM SGI P VT ++L AC+H G + G
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI H GF + +VD+ + G L +L ++ E W +++
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+H A R+ ++P V + +LS
Sbjct: 596 IHKNTEMANVASKRLF--QLDPENVGYYVLLS 625
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 204/315 (64%), Gaps = 2/315 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +W +I+ + +N AL F EM+ S + PD T+ +L ACA L + G+++H
Sbjct: 377 NVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVH 436
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G+++DV+IG+ALVDMYAKCGS+ ++ V+ ++ NL N+++ A+HG
Sbjct: 437 AHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGD 496
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +A+F M+ P+ VTF+SVLS+C HAG VE G F MT Y++TP ++HY C+
Sbjct: 497 EGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTY-YNVTPSLKHYTCI 555
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLLS+AG L++A EL++ +P++V+WGALLGGC + N+E+ IA L+ LEPNN+
Sbjct: 556 VDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNT 615
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA RW ++ + R +K+ G+ K PG SWIE ++ F + DKSH +
Sbjct: 616 GNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKS-PGCSWIEDREDIHVFLSCDKSHEKT 674
Query: 305 DEIYSSLSKLDEQLK 319
++IY++L L+ ++
Sbjct: 675 EDIYTTLDNLNTHMR 689
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 118/258 (45%), Gaps = 40/258 (15%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGR 61
+D ISW +MI+ Y+ N F EAL F ++ GI D T+ +VL+ACA + +L G+
Sbjct: 238 GKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGK 297
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---------------- 105
E+H + G + ++G ALV+MY+KC L + L F + E+
Sbjct: 298 EVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCN 357
Query: 106 -------------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
N++ WN II G +G AL +F M ++ P+ T
Sbjct: 358 QLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVG 417
Query: 147 SVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+L AC + G++ S+ GY + +V +VD+ +K G ++ A++ + +
Sbjct: 418 IILPACARLATIARGKQVHAHSIRQGYEL--DVHIGAALVDMYAKCGSIKHAMQ-VYNRI 474
Query: 206 FQPNAVIWGALLGGCKLH 223
PN V A+L +H
Sbjct: 475 SNPNLVSQNAMLTAYAMH 492
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D T A++L +C L+LG+++H + ++ GF ++ + L+ MY + G LD + LVF
Sbjct: 61 DSSTYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
K+ ++NL+ W +I+ HG+ EAL++F+++ +++ F VL C ++E
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLE 177
Query: 160 EGRR-------------RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
GR+ L + G+S+ V Y M+ + G +E A EL +
Sbjct: 178 LGRQLHGVVIKRCADMGSALKIFSGFSVKNVVS-YNTMIVGYCENGNVEKAKELFDQMEL 236
Query: 207 -QPNAVIWGALLGG 219
+ + W +++ G
Sbjct: 237 VGKDTISWNSMISG 250
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SWT +++ + + F EAL F +++ I + VL C L L+LG
Sbjct: 120 MPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELG 179
Query: 61 REIHLYVMQ----IGFDIDVYIGSALVDM---------YAKCGSLDRSLLVF--FKLREK 105
R++H V++ +G + ++ G ++ ++ Y + G+++++ +F +L K
Sbjct: 180 RQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGK 239
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMF-DRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ WNS+I G A + EAL+MF D ++ E +E + T SVL+AC + G+
Sbjct: 240 DTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGK 297
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 205/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ISW T+I+ QN + +ALD F E+ + P++ + ++L+A A LG L+ G
Sbjct: 226 MPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYG 285
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + F + +G+ALVDMYAKCG +D S +F ++ EK+ + WN +I GLA H
Sbjct: 286 KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATH 345
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EALA+F++ + + P VTFI VL+AC+ AGLV EG+ F MT Y I PE+EH
Sbjct: 346 GLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEH 405
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AG + DA+E+I P+ V+W ++LG C++H +E+ N+L+ ++
Sbjct: 406 YGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMD 465
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G+ L ++A + +W +V+K+R M E K G S IE E +V++F A DK
Sbjct: 466 PTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNK-IAGWSLIEAEGRVHRFVAGDKE 524
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H + EIY L + ++ A Y + ++L
Sbjct: 525 HERTTEIYKMLEIMGVRIAAAGYSANVSSVL 555
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 107/226 (47%), Gaps = 36/226 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIH 64
+ + MI C+ + R ++ ++ M S ++ P++ T+ VL AC++ A+ G ++
Sbjct: 97 VFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQ 156
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKC--------------------------------GSL 92
+V+++GF DV++ +AL+ +Y C G +
Sbjct: 157 THVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQI 216
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ +F ++ EK++ W +II G +G +AL F + + + PN +S+L+A
Sbjct: 217 SVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAA 276
Query: 153 THAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
G +E G+R ++ + + +T + +VD+ +K G ++++
Sbjct: 277 AQLGTLEYGKRIHSIANSLRFPMTASLG--TALVDMYAKCGCIDES 320
>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 205/329 (62%), Gaps = 1/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RD++SW +I+ ++QNK EAL AF +M++ I P+ VTMA +LS C HL + L
Sbjct: 410 LSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILC 469
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ F+ + + ++L+ YAKCG + S VF KL +N WNSI+ G +H
Sbjct: 470 KEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMH 529
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E A F++M N++P+ TF S+LS+C+H+G V+ G + F SM Y++ P VE
Sbjct: 530 GRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQ 589
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L A +LI S P+ IWG+LL CK H N ++A + N + L+
Sbjct: 590 YTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELD 649
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
++ GY LL N+Y + EV ++R +K++G++K+ PG SWIE++ ++ F A D S
Sbjct: 650 ASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQ-PGCSWIEVDNSIHIFVAGDYS 708
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEA 329
H S +IY+++ L ++K YVP ++A
Sbjct: 709 HDRSGDIYATIESLSLEMKRVGYVPHIQA 737
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++ W +++ +QN EAL+ F+E PD V + L AC+ L G I
Sbjct: 312 HNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAI 371
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + +++GFD DV++G ALVD Y KCG ++ + VF+ L ++L WN++I G A + A
Sbjct: 372 HGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCA 431
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTH 154
EAL F M + ++PN VT +LS CTH
Sbjct: 432 DEALKAFRDMQSKQIKPNTVTMACILSVCTH 462
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
R++ W MI Y N+ AL+ F EM GISPD T+ VL C+ L L +G++
Sbjct: 210 GRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQ 269
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++ +G D DV +G+AL++MY KCG + SL +F + + NL W S++ A +G+
Sbjct: 270 IHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGY 329
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHY 181
+EAL F + + P+ V ++ L AC+ L G ++ G+ +V
Sbjct: 330 PNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFD--SDVFVG 387
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G +VD K G +E A ++ + + V W AL+ G
Sbjct: 388 GALVDFYGKCGDMEYAQQVFYGLSTR-DLVSWNALISG 424
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
M RD +SW TMI+ + Q+ + ++L F M + G ++V LS+CA + L
Sbjct: 100 MEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLT 159
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-----KNLFCWNSI 113
G EIH ++++ G D D ++ SAL++MY KCG + + VF ++R+ +N+ WN +
Sbjct: 160 HGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVM 219
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G + AL +F M+ + P+ T + VL C+ + G ++ + G
Sbjct: 220 ILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVG-KQIHGLILGLG 278
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ +V ++++ K G E +L++ + S+ N V+WG+++ C
Sbjct: 279 LDDDVRVGTALMEMYFKCGDPETSLQIFKRSQ-NHNLVMWGSVMLNC 324
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 16/226 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTM-ATVLSACAHLGALDLGREI 63
D+ MI +++ F +A+ + + G ++ ++ A L ++ G++I
Sbjct: 2 DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++ GF D+++ ++L+ MY KCG+ ++ +F ++ E++ WN++I G G
Sbjct: 62 HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121
Query: 124 HEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH- 180
++L MF RM+ E N V ++ LS+C + G G+ + V+
Sbjct: 122 VKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLE-----IHGFLVKKGVDSD 176
Query: 181 ---YGCMVDLLSKAGLLEDA---LELIRSSKF-QPNAVIWGALLGG 219
++++ K G +++A E IR ++ N +W ++ G
Sbjct: 177 EFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILG 222
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 196/325 (60%), Gaps = 2/325 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + + SW MI+ Y+QN A+ F EM +SP+ VT+ ++LSACA LGAL +G+
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGK 435
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H + + +VY+ +ALVDMYAKCGS+ + +F + +KN+ WN++I G +HG
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M+ + P GVTF+S+L AC+H+GLV EG F SM Y P EHY
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVD+L +AG L +ALE I +P +WGALLG C +H+N E+A++A L L+P
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDP 615
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N GY LL N+Y+ + + +R +K+ + K PG + IE++ + Y F + D+SH
Sbjct: 616 ENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAK-TPGCTLIEIDDQQYVFTSGDRSH 674
Query: 302 PASDEIYSSLSKLDEQLKLASYVPE 326
P + I+ L KL +++ A Y E
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAE 699
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 35/300 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD + W TMI+ +S+N F +++ F +M + G+S D T+ATVL+A A L LG
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I + G DVY+ + L+ +Y+KCG + ++F ++ + +L +N++I G +
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A+ +F ++ N T + ++ ++ R + LS+ G + P V
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVS 353
Query: 180 -----------------------------HYGCMVDLLSKAGLLEDALELIRS--SKFQP 208
+ M+ ++ GL + A+ L + + P
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP 413
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLLLNMYAEVSRWAEVTKI 266
N V ++L C L I V+ L+ E +N T L++MYA+ E ++
Sbjct: 414 NPVTVTSILSACAQLGALSIGK-WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+IS+ MI+ Y+ N + A+ F E+ SG + T+ ++ L L R I
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQ 338
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++IG + + +AL +Y + + + +F + EK+L WN++I G +G
Sbjct: 339 NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTD 398
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+++F M+ + + PN VT S+LSAC G + G+ + + V +
Sbjct: 399 RAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTAL 456
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
VD+ +K G + +A +L N V W A++ G LH
Sbjct: 457 VDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLH 494
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 114/243 (46%), Gaps = 21/243 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+ + +I +S N + ++ + + K + + PD T A +SA + L +G +
Sbjct: 76 DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + + G ++++GSA+VD+Y K + + VF + E++ WN++I G + + +
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS---ITPEVEH 180
+++ +F M+ + + T +VL+A A L E R + + C S + +V
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAV--AELQE--YRLGMGIQCLASKKGLHSDVYV 251
Query: 181 YGCMVDLLSKAG------LLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
++ L SK G +L D ++ QP+ + + A++ G + E A
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQID-------QPDLISYNAMISGYTFNHETESAVTLFR 304
Query: 235 ELM 237
EL+
Sbjct: 305 ELL 307
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W MIT Y + +EAL F EM SGI P VT ++L AC+H G + G
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI H GF + +VD+ + G L +L ++ E W +++
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+H A R+ ++P V + +LS
Sbjct: 596 IHKNTEMANVASKRLF--QLDPENVGYYVLLS 625
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 201/327 (61%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +W+ MI Y + +AL+ F M+ GI P+ ++ +VLS CA L LD G
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH +++ FD+DVY+ S L+ MY KCG+L ++ VF + K++ WNSII G A H
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M + + P+ VTF+ VLSAC++ G V++G F SM Y + ++EH
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEH 551
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A++LI + +A+IWGALLG C+ H L++A +A +L++LE
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE 611
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA RW +V ++R M++ + K PG SWI +E+KV++F D S
Sbjct: 612 PKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSK-YPGCSWIVVEKKVHKFTGGDSS 670
Query: 301 -HPASDEIYSSLSKLDEQLKLASYVPE 326
HP EI L L L+ A Y P+
Sbjct: 671 GHPEHSEINRILEWLSGLLREAGYYPD 697
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMIT Y QN+Q A F M ++V+ +L + G LD
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEA 334
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ M I V +A++ + + G + ++ VF ++REK+ W+++I+
Sbjct: 335 SEL-FNAMPIK---SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G +AL +F M E + PN + ISVLS C ++ GR
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGR 432
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
++L+ Y++ G ++++ +VF ++R+KN+ WNSI+ G + EA MFD+M E
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SE 157
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDA 197
N +++ ++S + G++ E R F M PE V + MV K G++ +A
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRM-------PERNVVSWTAMVRGYVKEGMISEA 210
Query: 198 LELIRSSKFQPNAVIWGALLGG----------CKLHRNLEIAHIAVNELMILEPNNSGYC 247
L + N V W +LGG C+L + + MI GYC
Sbjct: 211 ETLFWQMP-EKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMI-----GGYC 264
Query: 248 TL 249
+
Sbjct: 265 QV 266
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 26/223 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++IISW +++ Y QNK+ +EA + F++M + ++ ++S + G ++
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER----NTISWNGLVSGYINNGMINEA 179
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+ FD +V +A+V Y K G + + +F+++ EKN+ W ++ G
Sbjct: 180 REV--------FDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGG 231
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
L G EA +FD M ++V VT +++ G + E R F M
Sbjct: 232 LLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMP-----RR 282
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V + M+ + ++ A +L + N V W A+L G
Sbjct: 283 NVVSWTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKG 324
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW+T+I Y + + AL F M G+ ++ + T LSA A LG L+ G
Sbjct: 225 MPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQG 284
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V ++G + V +G+AL+DMY+KCGS+ + VF + +++F WNS+I GLA H
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATH 344
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H+A+ +F++ + E P +TF+ VL+AC+ GLV+EGRR F M Y I E+EH
Sbjct: 345 GLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEH 404
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGL+++A+ELI + P+ V+WG +L CK H +++ N+L+ L+
Sbjct: 405 YGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELD 464
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + GY LL ++YA+ +W EV K+R M G K G S +E V++F D +
Sbjct: 465 PAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSA-GWSLMEAHGIVHKFLVGDMN 523
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S IY+ L ++ +L A YVP++ ++L
Sbjct: 524 HKDSARIYNMLCTINRRLAEAGYVPDVSSVL 554
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A++ Y + G + + VF + ++ W+++I G G AL +F M+
Sbjct: 198 DVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMV 257
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSKAGL 193
+ V+ N ++ LSA GL+E+G +F+ + +T V ++D+ SK G
Sbjct: 258 AQGVKANEAAIVTALSAAAQLGLLEQG--KFVHEVVKRVGMTMSVNLGAALIDMYSKCGS 315
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A E+ + + + W +++ G H
Sbjct: 316 VAAAKEVFDAMPRR-DVFAWNSMICGLATH 344
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 204/315 (64%), Gaps = 2/315 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +W +I+ + +N AL F EM+ S + PD T+ +L ACA L + G+++H
Sbjct: 214 NVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVH 273
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G+++DV+IG+ALVDMYAKCGS+ ++ V+ ++ NL N+++ A+HG
Sbjct: 274 AHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGD 333
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +A+F M+ P+ VTF+SVLS+C HAG VE G F MT Y++TP ++HY C+
Sbjct: 334 EGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTY-YNVTPSLKHYTCI 392
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLLS+AG L++A EL++ +P++V+WGALLGGC + N+E+ IA L+ LEPNN+
Sbjct: 393 VDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNT 452
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA RW ++ + R +K+ G+ K PG SWIE ++ F + DKSH +
Sbjct: 453 GNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKS-PGCSWIEDREDIHVFLSCDKSHEKT 511
Query: 305 DEIYSSLSKLDEQLK 319
++IY++L L+ ++
Sbjct: 512 EDIYTTLDNLNTHMR 526
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 30/230 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SW+ +I ++QN +EAL+ M+ +G P+ T+A+VL ACA L L+LG+EIH
Sbjct: 10 NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV + GF + ++ + LVD+Y +C + +L +F KN+ +N++I G +G
Sbjct: 70 GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSA---------------CTHAGLVEEGRRRFLSMT 169
+A +FD+M E V + +++ S++S G+ E + +
Sbjct: 130 KAKELFDQM--ELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLI 187
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
GY+ ++E+ +++ ++ ++ F+PN W ++ G
Sbjct: 188 SGYACCNQLEN-------------IQNLIQKMKGDGFEPNVYTWNGIISG 224
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 34/182 (18%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++S+ TMI Y +N +A + F++M+ G D ++ +++S A
Sbjct: 110 KNVVSYNTMIVGYCENGNVEKAKELFDQMELVG--KDTISWNSMISGYA----------- 156
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
D KC L + L F + E++ WN +I G A
Sbjct: 157 --------------------DNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQL 196
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+ +M + EPN T+ ++S G E R F M S+ P++ G
Sbjct: 197 ENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTS-SLRPDIYTVGI 255
Query: 184 MV 185
++
Sbjct: 256 IL 257
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 185/283 (65%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+RD+ISWT+MI YS KQ EA+ F EM S + PD++T+AT LSACAHLG+LD G
Sbjct: 265 MPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAG 324
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + DV++G++L+DMY KCG ++++L VF ++ ++ W SII GLAV+
Sbjct: 325 EAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVN 384
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA AL +FD+M+ E + P TF+ VL AC H GLV++G F SM Y + PE++H
Sbjct: 385 GFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKH 444
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL ++G L+ A I+ P+ VIW LL CKLH NL +A I +L++L+
Sbjct: 445 YGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLD 504
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS 283
P+N+G L + YA RW +V KIR M+ ++K C SS
Sbjct: 505 PSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSS 547
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 143/285 (50%), Gaps = 37/285 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I Y Q +F++ LD F EM+ + D VTM +SA L ++G
Sbjct: 133 MLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG 192
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
+ Y+ + G +D+Y+G+ L+DMY + G +D + VF++++EKN+ WN++I G A
Sbjct: 193 DYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKV 252
Query: 119 ------------------------VHGFA-----HEALAMFDRMIYENVEPNGVTFISVL 149
+ G++ EA+ +F M+ V+P+ +T + L
Sbjct: 253 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL 312
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC H G ++ G + I +V ++D+ K G++E AL++ K + +
Sbjct: 313 SACAHLGSLDAGEAVH-DYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR-D 370
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLLL 251
+V W +++ G ++ E A + V + M+ E P + + +LL
Sbjct: 371 SVSWTSIISGLAVNGFAESA-LNVFDQMLKEGICPTHGTFVGVLL 414
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 2/231 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ W MI S++ + +A+ +N M GI +T + +CA + + G+ + +
Sbjct: 37 LLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRV 96
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
+ M++GF+ ++ +AL+ MY G L + VF + E+++ WNSII G +
Sbjct: 97 HSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKK 156
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
L +F M NV + VT + +SA E G + + + ++ ++
Sbjct: 157 VLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG-DYLVKYIDEHGVVVDLYLGNTLI 215
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
D+ + G+++ A + K + N V W A++ G NL A NE+
Sbjct: 216 DMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNLVAAKKLFNEM 265
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
SL ++ VF +++ L WN +I GL+ ++A+ ++ M Y+ ++ + +TFI +
Sbjct: 21 SLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFK 80
Query: 151 ACTHAGLVEEGRR-RFLSMTCGYSITPEVEH-----YGCMVDLLSKAGLLEDALELIRSS 204
+C V +G+ R SM G+ V + Y C +L + + LE
Sbjct: 81 SCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLE----- 135
Query: 205 KFQPNAVIWGALLGG 219
+ V W +++ G
Sbjct: 136 ---RDVVSWNSIICG 147
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 213/328 (64%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + WT MI + +N++ AL+AF M+ + P++ T+ VLSAC+ LGAL++GR +
Sbjct: 241 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 300
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + ++++++G+AL++MY++CGS+D + VF +++++++ +N++I GL+++G +
Sbjct: 301 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 360
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F MI + P VTF+ VL+AC+H GLV+ G + F SMT Y + P++EHYGC
Sbjct: 361 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC 420
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL + G LE+A +LIR+ K P+ ++ G LL CK+H+NLE+ L +
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQAD 480
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL ++YA +W E ++R MKE G++K PG S IE+ ++++F D HP
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE-PGCSSIEVNNEIHEFLLGDLRHPR 539
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ IY L +L+ L+L Y PE E +L
Sbjct: 540 KERIYEKLEELNRLLRLEGYHPEKEVVL 567
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 63/279 (22%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +T +I + + + +A+ ++ M + I PD MA++L AC AL GRE+H
Sbjct: 111 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVH 170
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------DRSLL-- 97
+++G + + ++++Y KCG L D+ L+
Sbjct: 171 SRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEE 230
Query: 98 ---VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
VF ++R K+ CW ++I+G + + AL F M ENV PN T + VLSAC+
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290
Query: 155 AGLVEEGR------RRF---LSMTCGYSI---------------------TPEVEHYGCM 184
G +E GR R+F L++ G ++ +V Y M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350
Query: 185 VDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGC 220
+ LS G A+EL R + +P V + +L C
Sbjct: 351 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 389
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I++ TMI+ S N + R+A++ F M + P VT VL+AC+H G +D G
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 398
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+I H G + + +VD+ + G L+ +
Sbjct: 399 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEA 434
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89
N S S DQ + ++L H+ + IH +++ G D ++ L+ +KC
Sbjct: 38 NSNPKSLKSLDQKQIISLLQRSKHINQV---LPIHAQLIRNGHSQDPFMVFELLRSCSKC 94
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++D + +F N++ + ++I+G G +A+ ++ RM+++++ P+ S+L
Sbjct: 95 HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASIL 154
Query: 150 SACTHAGLVEEGR 162
AC + EGR
Sbjct: 155 KACGSQLALREGR 167
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+I+ ++K + L ++ +G S D + +L +C+ A+D I Y
Sbjct: 52 IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYT---- 107
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN----SIIEGLAVHGFAHEAL 127
+ +VY+ +AL+D + G+ ++ ++ ++ ++ N SI++ E
Sbjct: 108 HNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGR 167
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVD 186
+ R + + N + + ++ G + + RR F M PE V M+
Sbjct: 168 EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEM-------PEDVVASTVMIS 220
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
S GL+E+A + + + + V W A++ G
Sbjct: 221 SYSDQGLVEEAGAVFSRVR-RKDTVCWTAMIDG 252
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 273 bits (697), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI++WT MI Y Q+ + +E D F ++ SGI P++ T + VL+ACA+ + +LG
Sbjct: 264 MVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELG 323
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ ++GFD + SALV MY+KCG++ + VF + + +LF W S+I G A +
Sbjct: 324 KKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQN 383
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ F+ ++ +P+ +TF+ VLSAC HAGLV++G F S+ Y +T +H
Sbjct: 384 GQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADH 443
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL+++G ++A +I +P+ +W +LLGGC++H NL++A A L +E
Sbjct: 444 YACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIE 503
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N L N+YA W+EV KIR M + G+ K+ PG SWI ++R V+ F D S
Sbjct: 504 PENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKK-PGLSWIAIKRDVHVFLVGDDS 562
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EI L KL +++K +VP+ +L
Sbjct: 563 HPKSKEINEFLGKLSKRMKEEGFVPDTNFVL 593
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
MP RD SWT MI+ Y ++ + EAL+ F MK S S ++ T+++ L+A A + L +
Sbjct: 162 MPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRI 221
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+EIH Y+M+ G D D + SAL DMY KCGS++ + +F K+ ++++ W ++I+
Sbjct: 222 GKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQ 281
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G E +F ++ + PN TF VL+AC + E G++ MT P
Sbjct: 282 DGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT-RVGFDPFSF 340
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + SK G + A + + + QP+ W +L+ G
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAG 379
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY 77
Q + +EAL +++ P +T++ +C L G+++H ++ GF ++
Sbjct: 51 QQNRLKEALQILHQIDK----PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLF 106
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
I + L++MYAKC SL S +F ++ E++L WN +I G A G EA ++FD+M
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKM 162
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D +S+ ++++ Y+Q+ EA D F + K ++ + +T++TVL A +H GAL +G+
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKC 308
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V+++G + DV +G++++DMY KCG ++ + L F +++ KN+ W ++I G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +AL +F MI V PN +TF+SVL+AC+HAGL + G F +M + + P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYG 428
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG L+ A +LI+ K +P+++IW +LL C++H+N+E+A I+V L L+P+
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPS 488
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N GY LL ++YA+ RW +V ++R+ MK G+ K PG S +E+ +V+ F D+ HP
Sbjct: 489 NCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKP-PGFSLLELNGEVHVFLIGDEEHP 547
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAM 330
++IY L++L+ +L A YV ++
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSV 575
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 17/235 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHL 54
+P R+I+SWT+MI Y N +A+ F ++ ++ + D + M +V+SAC+ +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRV 196
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLREKNLFCWNS 112
A L IH +V++ GFD V +G+ L+D YAK G + + +F ++ +K+ +NS
Sbjct: 197 AAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 113 IIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGR---RRFLSM 168
I+ A G ++EA +F R+I E V N +T +VL A +H+G + G+ + + M
Sbjct: 257 IMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V ++D+ K G +E A K N W A++ G +H
Sbjct: 317 ----GLEDDVIVGTSIIDMYCKCGRVETARLAFDRMK-NKNVRSWTAMIAGYGMH 366
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW ++I +++ EAL AF+ M+ + P + + + AC+ L + G++ H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
G+ D+++ SAL+ MY+ CG L+ + VF ++ ++N+ W S+I G ++G A
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 125 EALAMFDRMIYENVEPNGVTF------ISVLSACTHA---GLVE 159
+A+++F ++ E + + F +SV+SAC+ GL E
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTE 203
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ SWT MI Y + +AL+ F M +SG+ P+ +T +VL+AC+H G D+G
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVG 407
Query: 61 RE-IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
+ + G + + +VD+ + G L ++ + K++ E + W+S++
Sbjct: 408 WHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACR 467
Query: 119 VH 120
+H
Sbjct: 468 IH 469
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 205/308 (66%), Gaps = 1/308 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R I+SWT MI+ Y++ + +AL F +M+ G+ PD++++ +VL ACA LGAL++G
Sbjct: 211 MPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH+Y + G I +AL++MY+KCG + ++ +F ++ + ++ W+++I GLA H
Sbjct: 271 KWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANH 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA+ +F RM +EPNG+TF+ +LSAC HAG EG F SM+ Y I PEVEH
Sbjct: 331 GKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEH 390
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+L +AG L AL++I +P++ IWG+LL C+ H NL+IA IA+ L LE
Sbjct: 391 YGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELE 450
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+++G LL N+YA++++W V+++R +K + K+ PGSS I++ V +F + D S
Sbjct: 451 PDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSM-KKTPGSSLIDINNVVQEFVSWDDS 509
Query: 301 HPASDEIY 308
P S +I+
Sbjct: 510 KPFSRDIF 517
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 42/254 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEM-------KNSGISPDQVTMATVLSACAHLGALDLGR 61
+ MI ++ NK + A+ + EM + I PD+ T V+ +C+ L +LG+
Sbjct: 80 YNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGK 139
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H ++ + G ++ + +AL+DMY KC SL + VF + E++ WNSII G G
Sbjct: 140 QVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVG 199
Query: 122 FAHEALAMFDRMIYEN-------------------------------VEPNGVTFISVLS 150
+A A+FD M Y VEP+ ++ ISVL
Sbjct: 200 QMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLP 259
Query: 151 ACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
AC G +E G +++ M C + + + ++++ SK G + A +L + +
Sbjct: 260 ACAQLGALEVG--KWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMS-KGD 316
Query: 210 AVIWGALLGGCKLH 223
+ W ++GG H
Sbjct: 317 VISWSTMIGGLANH 330
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 106/245 (43%), Gaps = 31/245 (12%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C ++ L + IH +V++ ++ + +VD+ K L + L+F +++E N
Sbjct: 20 ILQNCKNIVEL---KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPN 76
Query: 107 LFCWNSIIE--------GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
+ +N++I LA+ F E L + D + P+ TF V+ +C+
Sbjct: 77 GYLYNAMIRAHTHNKVYALAIL-FYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCY 135
Query: 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
G++ + C + + ++D+ +K L DA ++ + +A+ W +++
Sbjct: 136 NLGKQVHAHL-CKFGPKSNITMENALIDMYTKCASLLDAHKVF-DGMVERDAISWNSIIS 193
Query: 219 GCKLHRNLEIAHIAVNE------LMILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMK 271
G H+ V + L L P + T +++ Y + +A+ + M+
Sbjct: 194 G----------HVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQ 243
Query: 272 ELGIE 276
+G+E
Sbjct: 244 IVGVE 248
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 201/318 (63%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+IISW MI+CY Q +F E L +N MK+ G++PD+VT+A VLS G L G
Sbjct: 301 MPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASG 360
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y+ D V + ++L+DMYA+CG +D S+ +F ++ KN WN II LA+H
Sbjct: 361 RMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMH 420
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA+ F M+ + P+ +TF+ +LSAC+H GL+E+G+ F +M Y++ PEVEH
Sbjct: 421 GRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEH 480
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G L A++LI+ +P+ V+WGAL+G C++H ++EI +A+ +L+ LE
Sbjct: 481 YACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELE 540
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G L+ N+ E +W ++ ++R M++ G +K G S IE+ +++F D
Sbjct: 541 GINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDM-GVSSIEINNSIHEFGVEDIR 599
Query: 301 HPASDEIYSSLSKLDEQL 318
H +S +IY+++ +L L
Sbjct: 600 HESSSQIYAAVDQLAYHL 617
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P R+++SW TMI +Q + EA F EM+ G+ D T ++L C+ G L++GR
Sbjct: 170 PHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGR 229
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKC-------------------------------G 90
+H +++ G +D+ +G+ALVDMY KC G
Sbjct: 230 LVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHG 289
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
S+D + F ++ E+N+ WN++I G E L +++RM + P+ VT VLS
Sbjct: 290 SVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLS 349
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
G + GR + +S P V ++D+ ++ G ++ ++ L + N
Sbjct: 350 VHGQNGDLASGRMIHCYIQDSFS-DPGVTVLNSLIDMYARCGQVDTSISLF-TEMPNKNT 407
Query: 211 VIWGALLGGCKLH 223
+ W ++G +H
Sbjct: 408 ISWNVIIGALAMH 420
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 10/278 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D ++ ++I YS + +EAL ++ GI P++ T+ VL AC+ A +
Sbjct: 67 VPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHA 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
H +++G+ V++G+AL+ A GSL S +F ++ +N+ WN++I G A
Sbjct: 127 LATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQ 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EA A+F M + V + TF+S+L C+ G +E GR M S ++
Sbjct: 187 AGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRV-DLI 245
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+VD+ K G D R P N V W ++L H +++ A +
Sbjct: 246 LGNALVDMYGKCG---DLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQ-- 300
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
+ N +++ Y + R+ E + MK LG+
Sbjct: 301 -MPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGL 337
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F ++ + + F +NS+I + G EAL + ++ + PN T VL AC+ A
Sbjct: 63 MFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARA 122
Query: 158 VEEG-RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
E +++ GY +V ++ + AG L D+ L N V W +
Sbjct: 123 AEHALATHGVAIKLGY--VRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTM 180
Query: 217 LGGC 220
+GGC
Sbjct: 181 IGGC 184
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 204/327 (62%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D ISW T++T Y+QN EA+DA+N M+ P+Q T +++ A +H+GAL
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH +++ +DV++ + L+D+Y KCG L+ ++ +F+++ WN+II L +
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +F M+ E V+ + +TF+S+LSAC+H+GLV+EG++ F M Y I P ++
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE A EL+R+ QP+A IWGALL CK++ N E+ +A + L+ +
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N GY LL N+YA +W V K+R ++ G+ K PG S + + K F ++
Sbjct: 625 DSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRK-TPGWSSVVVGSKAEVFYTGNQ 683
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP EIY L L ++K YVP+
Sbjct: 684 THPKYTEIYKELKVLSAKMKSLGYVPD 710
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I Y QN AL F M+ GI PD +T+ ++ S + L +
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R I +V++ + D DV IG+ALV+MYAK G ++ + VF +L K+ WN+++ G
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402
Query: 120 HGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G A EA+ ++ M + PN T++S++ A +H G +++G + + S+ +V
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDV 461
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
C++DL K G LEDA+ L + +V W A++ +H
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIH 505
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 84/150 (56%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ SW MI+ + QN AL N MK G+ D +T+A++L CA + G
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IHL+V++ G D DV++ +AL++MY+K G L + +VF ++ ++L WNSII +
Sbjct: 242 VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLS 150
AL F M + P+ +T +S+ S
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 8/198 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM----KNSGISPDQVTMATVLSACAHLGALDL 59
++I SW ++I+ Y + ++ EA++ N++ + PD T +L AC L +D
Sbjct: 83 KNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--VD- 139
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+++H V ++GF+ DV++ ++LV +Y++ G LD + VF + K++ WN++I G
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A AL + +RM E V+ + +T S+L C + V G L + + + +V
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV-LKHGLDSDVF 258
Query: 180 HYGCMVDLLSKAGLLEDA 197
++++ SK G L+DA
Sbjct: 259 VSNALINMYSKFGRLQDA 276
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+ ++C ++ A +++H ++ G ++ + + L+++Y G + S F + +KN
Sbjct: 28 LFNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIY----ENVEPNGVTFISVLSACTHAGLVEEGR 162
+F WNSII G HEA+ +++ ++ P+ TF +L AC LV+ +
Sbjct: 85 IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV--SLVDGKK 142
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G+ +V +V L S+ G+L+ A ++ + + W A++ G
Sbjct: 143 VHCCVFKMGFE--DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNAMISG 196
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 201/327 (61%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +W+ MI Y + +AL+ F M+ GI P+ ++ +VLS CA L LD G
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH +++ FD+DVY+ S L+ MY KCG+L ++ VF + K++ WNSII G A H
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M + + P+ VTF+ VLSAC++ G V++G F SM Y + ++EH
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEH 551
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A++LI + +A+IWGALLG C+ H L++A +A +L++LE
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE 611
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA RW +V ++R M++ + K PG SWI +E+KV++F D S
Sbjct: 612 PKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSK-YPGCSWIVVEKKVHKFTGGDSS 670
Query: 301 -HPASDEIYSSLSKLDEQLKLASYVPE 326
HP EI L L L+ A Y P+
Sbjct: 671 GHPEHSEINRILEWLSGLLREAGYYPD 697
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMIT Y QN+Q A F M ++V+ +L + G LD
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEA 334
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ M I V +A++ + + G + ++ VF ++REK+ W+++I+
Sbjct: 335 SEL-FNAMPIK---SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G +AL +F M E + PN + ISVLS C ++ GR
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGR 432
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
++L+ Y++ G ++++ +VF ++R+KN+ WNSI+ G + EA MFD+M E
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SE 157
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDA 197
N +++ ++S + G++ E R F M PE V + MV K G++ +A
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRM-------PERNVVSWTAMVRGYVKEGMISEA 210
Query: 198 LELIRSSKFQPNAVIWGALLGG----------CKLHRNLEIAHIAVNELMILEPNNSGYC 247
L + N V W +LGG C+L + + MI GYC
Sbjct: 211 ETLFWQMP-EKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMI-----GGYC 264
Query: 248 TL 249
+
Sbjct: 265 QV 266
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 26/223 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++IISW +++ Y QNK+ +EA + F++M + ++ ++S + G ++
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER----NTISWNGLVSGYINNGMINEA 179
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+ FD +V +A+V Y K G + + +F+++ EKN+ W ++ G
Sbjct: 180 REV--------FDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGG 231
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
L G EA +FD M ++V VT +++ G + E R F M
Sbjct: 232 LLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMP-----RR 282
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V + M+ + ++ A +L + N V W A+L G
Sbjct: 283 NVVSWTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKG 324
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 201/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++ISW MI Y +N +A+D + +M+ + PD +T A+VL AC L AL LGR I
Sbjct: 251 KNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRI 310
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV + ++ + ++L+DMYA+CG LD + VF +++ +++ W S+I + G
Sbjct: 311 HEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQG 370
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+A+F M+ P+ + F+++LSAC+H+GL++EGR F MT Y ITP +EHY C
Sbjct: 371 CNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYAC 430
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL +AG +++A +I+ +PN +W LL C++ N++I +A + L+ L P
Sbjct: 431 LVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQ 490
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N+YA+ RW EVT+IR MK I K PG S +E+ +V+ F A D SHP
Sbjct: 491 SGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRK-TPGISNVELNNQVHTFLAGDTSHPQ 549
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S EIY L L ++K YVPE ++ L
Sbjct: 550 SKEIYEELGVLVAKMKELGYVPETDSAL 577
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 29/286 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++ + MI Y N ++ + L F EM N G PD T VL AC+ L G
Sbjct: 79 MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH V+++G D ++++G+ L+ MY KCG L + VF ++ K++ WNS++ G A +
Sbjct: 139 LLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHN 198
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC--THAGLVEEGRRRFLSMTCGYSITPEV 178
+AL + M +P+G T S++ A T + V + F+++ I+
Sbjct: 199 MRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLIS--- 255
Query: 179 EHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRN 225
+ M+ + K L A++L + + +P+A+ + ++L C ++H
Sbjct: 256 --WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEY 313
Query: 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
+E + N L+ NS L++MYA + ++ MK
Sbjct: 314 VEKKKLCPNLLL----ENS-----LIDMYARCGCLDDAKRVFDRMK 350
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ SWT++I+ Y Q A+ F EM NSG +PD + +LSAC+H G LD G
Sbjct: 349 MKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEG 408
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R I+ M + I I + LVD+ + G +D + + ++ E N W +++
Sbjct: 409 R-IYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSC 467
Query: 118 AV 119
V
Sbjct: 468 RV 469
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + + +G L+ YA CG + VF ++ ++N+ +N +I +
Sbjct: 38 KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNN 97
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ L +F M+ P+ T+ VL AC+
Sbjct: 98 HRYDDGLLVFREMVNGGFRPDNYTYPCVLKACS 130
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 204/333 (61%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M RDI+SW MI Y+Q+ +AL F ++ G PD++T+ LSAC+ +GAL+
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH++V ++V + + L+DMY+KCGSL+ ++LVF K++ WN++I G A+
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 120 HGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG++ +AL +F+ M ++P +TFI L AC HAGLV EG R F SM Y I P++
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKI 397
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+V LL +AG L+ A E I++ ++V+W ++LG CKLH + + L+
Sbjct: 398 EHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG 457
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L NSG LL N+YA V + V K+R MKE GI K PG S IE+E KV++F A D
Sbjct: 458 LNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKE-PGISTIEIENKVHEFRAGD 516
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ H S EIY+ L K+ E++K YVP +L
Sbjct: 517 REHSKSKEIYTMLRKISERIKSHGYVPNTNTVL 549
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 129/251 (51%), Gaps = 38/251 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ +T I S N +A + ++ +S I+P++ T +++L +C+ G+ IH
Sbjct: 94 DLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIH 149
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-----------DRSLL---------------- 97
+V++ G ID Y+ + LVD+YAK G + +RSL+
Sbjct: 150 THVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVE 209
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSAC 152
+F + E+++ WN +I+G A HGF ++AL +F +++ E +P+ +T ++ LSAC
Sbjct: 210 AARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSAC 269
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ G +E GR + + I V+ ++D+ SK G LE+A+ L+ + + + V
Sbjct: 270 SQIGALETGRWIHVFVKSS-RIRLNVKVCTGLIDMYSKCGSLEEAV-LVFNDTPRKDIVA 327
Query: 213 WGALLGGCKLH 223
W A++ G +H
Sbjct: 328 WNAMIAGYAMH 338
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YA G + SL +F + + +LF + + I +++G +A ++ +++ + PN TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 146 ISVLSAC-THAG-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
S+L +C T +G L+ +F G I P V +VD+ +K G
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKF-----GLGIDPYVA--TGLVDVYAKGG 175
>gi|125569795|gb|EAZ11310.1| hypothetical protein OsJ_01174 [Oryza sativa Japonica Group]
Length = 326
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 201/313 (64%), Gaps = 1/313 (0%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+I Y+Q KQ EA++ F M+ GI PD V + +VLSAC LG +DLG +H +V++ G
Sbjct: 2 VIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRG 61
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
++ + +A++DMY KCGS+ ++L VF + +K++ W ++I G A+HG EA+ +F
Sbjct: 62 LCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFR 121
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
RM ENV PN +TF++VLS C+H GL + GR F +M Y I P VEHYGCM+DLL +A
Sbjct: 122 RMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRA 181
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLL 251
G L +A LI+ F+ NA IWGALL + H + E+ A+ L+ LEP+NSG LL
Sbjct: 182 GCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLS 241
Query: 252 NMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSL 311
N+YAE RW V ++R++M++ G+ + PG+S I+++ V++F + D SHP+ +I L
Sbjct: 242 NIYAEQERWDAVRELRISMRDRGL-RNVPGASSIDVDGMVHEFTSRDGSHPSLHKIREVL 300
Query: 312 SKLDEQLKLASYV 324
++ +K ++
Sbjct: 301 CAINSNIKSVGHI 313
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + I++WTTMI ++ + EA++ F M+ +SP+ +T VLS C+H+G DLG
Sbjct: 92 MEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLG 151
Query: 61 R-EIHLYVMQIGFDIDVYIGSALVDMYAKCGSL--DRSLLVFFKLREKNLFCWNSIIEGL 117
R V Q V ++D+ + G L R L+ + N W +++
Sbjct: 152 RWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFK-ANAAIWGALLAAA 210
Query: 118 AVHG 121
HG
Sbjct: 211 RTHG 214
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 213/329 (64%), Gaps = 1/329 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A+D + WT MI + +N++ AL+AF M+ + P++ T+ VLSAC+ LGAL++GR
Sbjct: 204 AKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 263
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H Y+ + ++++++G+AL++MY++CGS+D + VF +++++++ +N++I GL+++G
Sbjct: 264 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 323
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ +A+ +F M+ + P VTF+ VL+AC+H GLV+ G F SM Y + P++EHYG
Sbjct: 324 SRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYG 383
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL + G LE+A +LIR+ K P+ ++ G LL CK+H+NLE+ EL
Sbjct: 384 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQA 443
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+SG LL ++YA +W E ++R MKE G++K PG S IE+ ++++F D HP
Sbjct: 444 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE-PGCSSIEVNNEIHEFLLGDLRHP 502
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ IY L +L+ L+L Y PE E +L
Sbjct: 503 QKERIYEKLEELNRLLRLEGYHPEKEVVL 531
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 43/308 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +T +I + + + EA+ ++ M + I PD MA++L AC AL GRE+H
Sbjct: 101 NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVH 160
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----KNLFCWNSIIEGLAVH 120
+++GF + + ++++Y KCG L + VF ++ E K+ CW ++I+G +
Sbjct: 161 SRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRN 220
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR------RRF---LSMTCG 171
+ AL F M ENV PN T + VLSAC+ G +E GR R+F L++ G
Sbjct: 221 EETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 280
Query: 172 YSI---------------------TPEVEHYGCMVDLLSKAGLLEDALELIR---SSKFQ 207
++ +V Y M+ LS G A+EL R + +
Sbjct: 281 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 340
Query: 208 PNAVIWGALLGGCK----LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
P V + +L C + EI H + + EP Y ++++ V R E
Sbjct: 341 PTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRV-EPQIEHY-GCMVDLLGRVGRLEEA 398
Query: 264 TKIRVAMK 271
+ MK
Sbjct: 399 YDLIRTMK 406
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89
N S S DQ + ++L H+ + IH +++ G D ++ L+ +KC
Sbjct: 28 NSNPKSLKSLDQKQIISLLQRSRHINQV---LPIHAQLIRNGHSQDPFMVFELLRSCSKC 84
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++D + +F N++ + ++I+G G EA+ ++ RM++E++ P+ S+L
Sbjct: 85 HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 144
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA---LELIRSSK 205
AC + EGR ++ G+S V +++L K G L DA E +
Sbjct: 145 KACGSQLALREGREVHSRALKLGFSSNRLVRLR--IMELYGKCGELGDARRVFEEMPEDV 202
Query: 206 FQPNAVIWGALLGG 219
+ V W A++ G
Sbjct: 203 VAKDTVCWTAMIDG 216
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I++ TMI+ S N + R+A++ F M + P VT VL+AC+H G +D G
Sbjct: 303 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 362
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRS 95
EI + M + ++ I +VD+ + G L+ +
Sbjct: 363 FEI-FHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEA 398
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 199/321 (61%), Gaps = 2/321 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +W+ +I Y QN+ EAL F EM + GI P+ ++ ++L+ CA L LD GRE+
Sbjct: 296 RDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREV 355
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ FD+D+Y SAL+ MY KCG+LD++ VF K++ WNS+I G A HG
Sbjct: 356 HGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLG 415
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +FD M + P+G+T+I L+AC++ G V+EGR F SM I P +EHY C
Sbjct: 416 EEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYAC 475
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AGL+++AL LI++ +P+AVIWGAL+G C++H+N EIA I+ +L+ LEP N
Sbjct: 476 MVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGN 535
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK-SHP 302
+G LL ++Y RW + + +R + + K G SWIE +++V+ F + D +H
Sbjct: 536 AGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSL-GCSWIEYDKRVHLFKSGDVLAHQ 594
Query: 303 ASDEIYSSLSKLDEQLKLASY 323
I L KLD L + Y
Sbjct: 595 EHASILKMLEKLDGLLMESGY 615
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 35/251 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA+D+++WT M++ Y Q + EA F+EM + V+ ++S A G ++L
Sbjct: 169 MPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLA 224
Query: 61 R----------EIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLD 93
R E+ M G+ D + + ++ + + G +D
Sbjct: 225 RKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVD 284
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF ++ E++ W++II+ + F EAL+ F M++ + PN + IS+L+ C
Sbjct: 285 AAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCA 344
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP-NAVI 212
+++ GR +M S ++ ++ + K G L+ A + F+P + V+
Sbjct: 345 ALAVLDYGREVHGAM-LRRSFDMDIYAVSALITMYIKCGNLDKAKRVFH--MFEPKDVVM 401
Query: 213 WGALLGGCKLH 223
W +++ G H
Sbjct: 402 WNSMITGYAQH 412
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 15/218 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ S+ +I+ S + DA + P V+ ++L G L
Sbjct: 74 MPTRDLASYNALISGLSLRRH--TLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLL--A 129
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I L+ + Y + L+ + G +D + +F ++ K++ W +++ G
Sbjct: 130 DAIQLFRQMPERNHISY--TVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQV 187
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +FD M NV V++ +++S G V R+ F M ++
Sbjct: 188 GRVDEARTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAML 243
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
+G + +AG +EDA EL + P A G ++G
Sbjct: 244 FGYI-----QAGRIEDAEELFNAMPDHPLAACNGMIVG 276
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 195/296 (65%), Gaps = 4/296 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+++W TMI Y + R+AL+ F EM+N G PD+VTM ++LSACA LG L +GR
Sbjct: 237 PEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGR 296
Query: 62 EIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ D+ V +G+ALVDMYAKCGS++ +L VF K+REK++ WNS+I GLA H
Sbjct: 297 KLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFH 356
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A E++ +F M +N++PN +TF+ V+ AC+HAG VEEGRR F M Y I P +
Sbjct: 357 GHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMI 416
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL +AGLL +A ELI + +PNA+IW LLG C++H N+E+ +A L+ L
Sbjct: 417 HHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKL 476
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM-ERKVYQF 294
+ SG LL N+YA W ++R M + G+ K G S IE +R V QF
Sbjct: 477 RRDESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEA-GRSLIEADDRAVMQF 531
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 130/273 (47%), Gaps = 22/273 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI W TM+ SQ+K + + + +M+N G+ PD+ T + +L C L G +H
Sbjct: 77 DIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVH 136
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V++ GF+++ ++ + L+ ++ CG L + +F+ L E+++ W+++ G A G
Sbjct: 137 GKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELG 196
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A +FD M +++ V++ +++ G +E R F + +V + M
Sbjct: 197 VARQIFDEMPVKDL----VSWNVMITGYVKNGEMENARTLF-----DEAPEKDVVTWNTM 247
Query: 185 VDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCKLHRNLEIA---HIAVNELMI 238
+ G ALE+ +R+ P+ V +LL C +L++ H +++E+
Sbjct: 248 IAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEM-- 305
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
G ++LL A V +A+ I +A++
Sbjct: 306 ----TRGDLSVLLG-NALVDMYAKCGSIEIALQ 333
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 94/216 (43%), Gaps = 33/216 (15%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-------VYIGSALVDMYAKCG 90
S ++ +++ C +L AL ++IH ++ GF+ + ++ G+ + G
Sbjct: 10 STNRKQPSSLWKNCNNLLAL---KQIHATLIIKGFNSNRAALRELIFAGAMTIS-----G 61
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+++ + VF ++ E ++F WN+++ G + + + ++ +M V+P+ TF +L
Sbjct: 62 AINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLK 121
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE-----DALELIRSSK 205
CT R G+ + +V YG V+ + L+ L + RS
Sbjct: 122 GCT----------RLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIF 171
Query: 206 F---QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ + + V W AL G L +A +E+ +
Sbjct: 172 YDLPERSVVSWSALTAGYARRGELGVARQIFDEMPV 207
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 205/326 (62%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +DIISW T+I YS+N EAL FN + + SPD+ T+A VL ACA L A D
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GREIH Y+M+ G+ D ++ ++LVDMYAKCG+L + ++F + K+L W +I G +
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HGF EA+A+F++M +E + ++F+S+L AC+H+GLV+EG R F M I P VE
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L++ G L A I + P+A IWGALL GC++H ++++A ++ L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N+GY L+ N+YAE +W +V ++R + + G+ K PG SWIE++ +V F A D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN-PGCSWIEIKGRVNIFVAGDS 756
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
S+P ++ I + L K+ ++ Y P
Sbjct: 757 SNPETENIEAFLRKVRARMIEEGYSP 782
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++S+T+MI Y++ EA+ F EM+ GISPD T+ VL+ CA LD G
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ + D+++ +AL+DMYAKCGS+ + LVF ++R K++ WN+II G + +
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+A+EAL++F+ ++ E P+ T VL AC ++GR M GY V
Sbjct: 477 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 536
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +VD+ +K G L A ++ + V W ++ G +H
Sbjct: 537 AN--SLVDMYAKCGALLLA-HMLFDDIASKDLVSWTVMIAGYGMH 578
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N + L F +M SGI D T+ +V + CA + LG
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ F + + L+DMY+KCG LD + VF ++ ++++ + S+I G A
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 375
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITPE 177
G A EA+ +F+ M E + P+ T +VL+ C L++EG+R G+ I
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +++A EL+ S + + W ++GG
Sbjct: 436 ----NALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIGG 472
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 101/194 (52%), Gaps = 1/194 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ +++ F ++ F +M +SG+ D T + V + + L ++ G ++H +++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +G++LV Y K +D + VF ++ E+++ WNSII G +G A + L+
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
+F +M+ +E + T +SV + C + L+ G R S+ + E ++D+
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSREDRFCNTLLDMY 341
Query: 189 SKAGLLEDALELIR 202
SK G L+ A + R
Sbjct: 342 SKCGDLDSAKAVFR 355
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D T+ +VL CA +L G+E+ ++ GF ID +GS L MY CG L + VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 100 FKLR-EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+++ EK LF WN ++ LA G ++ +F +M+ VE + TF V
Sbjct: 153 DEVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 199/316 (62%), Gaps = 3/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++ SW +I Y+QN + E L +F M + G + P+ TM VLSACA LGA D
Sbjct: 94 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 153
Query: 60 GREIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ +H Y +G++ +DV + +AL+DMY KCG+++ ++ VF ++ ++L WN++I GLA
Sbjct: 154 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 213
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL +F M + P+ VTF+ VL AC H GLVE+G F SM +SI PE+
Sbjct: 214 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 273
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EH GC+VDLLS+AG L A+E I + +AVIW LLG K+++ ++I +A+ EL+
Sbjct: 274 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIK 333
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N +L N+Y + R+ + +++VAM++ G +K G SWIE + + +F +S
Sbjct: 334 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEA-GVSWIETDDGLVKFYSSG 392
Query: 299 KSHPASDEIYSSLSKL 314
+ HP ++E+ L +L
Sbjct: 393 EKHPRTEELQRILREL 408
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 24/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M ++++ WT+MI Y NK A F+ +SP D V T++S +G +
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFD------LSPERDIVLWNTMISGYIEMGNML 54
Query: 59 LGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R + FD DV + +++ YA G ++ VF + E+N+F WN +I
Sbjct: 55 EARSL--------FDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLI 106
Query: 115 EGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGY 172
+G A +G E L F RM+ E +V PN T VLSAC G + G+ T GY
Sbjct: 107 KGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGY 166
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V ++D+ K G +E A+E+ + K + + + W ++ G H
Sbjct: 167 N-KVDVNVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAH 215
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 204/327 (62%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
+P +D ISW T++T Y+QN EA+DA+N M+ P+Q T +++ A +H+GAL
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH +++ +DV++ + L+D+Y KCG L+ ++ +F+++ WN+II L +
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +F M+ E V+ + +TF+S+LSAC+H+GLV+EG++ F M Y I P ++
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AG LE A EL+R+ QP+A IWGALL CK++ N E+ +A + L+ +
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N GY LL N+YA +W V K+R ++ G+ K PG S + + K F ++
Sbjct: 625 DSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRK-TPGWSSVVVGSKAEVFYTGNQ 683
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP EIY L L ++K YVP+
Sbjct: 684 THPKYTEIYKELKVLSAKMKSLGYVPD 710
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I Y QN AL F M+ GI PD +T+ ++ S + L +
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R I +V++ + D DV IG+ALV+MYAK G ++ + VF +L K+ WN+++ G
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402
Query: 120 HGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G A EA+ ++ M + PN T++S++ A +H G +++G + + S+ +V
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDV 461
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
C++DL K G LEDA+ L + +V W A++ +H
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIH 505
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 84/150 (56%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ SW MI+ + QN AL N MK G+ D +T+A++L CA + G
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IHL+V++ G D DV++ +AL++MY+K G L + +VF ++ ++L WNSII +
Sbjct: 242 VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLS 150
AL F M + P+ +T +S+ S
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 8/198 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM----KNSGISPDQVTMATVLSACAHLGALDL 59
++I SW ++I+ Y + ++ EA++ N++ + PD T +L AC L +D
Sbjct: 83 KNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL--VD- 139
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+++H V ++GF+ DV++ ++LV +Y++ G LD + VF + K++ WN++I G
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A AL + +RM E V+ + +T S+L C + V G L + + + +V
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV-LKHGLDSDVF 258
Query: 180 HYGCMVDLLSKAGLLEDA 197
++++ SK G L+DA
Sbjct: 259 VSNALINMYSKFGRLQDA 276
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+ ++C ++ A +++H ++ G ++ + + L+++Y G + S F + +KN
Sbjct: 28 LFNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIY----ENVEPNGVTFISVLSACTHAGLVEEGR 162
+F WNSII G HEA+ +++ ++ P+ TF +L AC LV+ +
Sbjct: 85 IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV--SLVDGKK 142
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G+ +V +V L S+ G+L+ A ++ + + W A++ G
Sbjct: 143 VHCCVFKMGFE--DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNAMISG 196
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 196/324 (60%), Gaps = 2/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D +W+ MI Y + EAL+ F M+ G+ + ++ +VLS CA L +LD GR++
Sbjct: 293 KDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQV 352
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ FD DV++ S L+ MY KCG L ++ +F + K++ WNSII G A HG
Sbjct: 353 HAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLV 412
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M + +GVTF+ VLSAC++ G V+EG F SM Y + P+ EHY C
Sbjct: 413 EEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYAC 472
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AGL+ DA++LI+ + +A+IWGALLG C+ H N+ +A +A +L+ LEP N
Sbjct: 473 MVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKN 532
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS-DKSHP 302
+G LL N+YA RW +V ++R M+ + K PG SWIE+E++V+ F HP
Sbjct: 533 AGPYILLSNIYASKGRWGDVAELRRNMRVKKVSK-SPGCSWIEVEKRVHMFTGGVSTKHP 591
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
I L KLD L+ A Y P+
Sbjct: 592 ELSSIMKMLEKLDGMLREAGYYPD 615
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 20/241 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWTTMI+ Y QN Q A F M ++V+ +L G ++
Sbjct: 197 MPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEA 252
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
E+ FD V +A++ + + G + ++ VF ++REK+ W+++I+
Sbjct: 253 SEL--------FDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKV 304
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
GF EAL +F M E V+ N + ISVLS C ++ GR+ +
Sbjct: 305 YERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS-QFDS 363
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNE 235
+V ++ + K G L A ++ +F P + V+W +++ G H +E A +E
Sbjct: 364 DVFVASVLITMYVKCGDLVKARQIF--DRFSPKDIVMWNSIITGYAQHGLVEEALQVFHE 421
Query: 236 L 236
+
Sbjct: 422 M 422
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YA+ G ++ + VF ++ +K + WNS++ G + EA +FD+M E N V++
Sbjct: 26 YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM----PERNTVSW 81
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRS 203
++S +V E R+ F +M PE V + MV + GL+ +A E +
Sbjct: 82 NGLISGYVKNRMVSEARKAFDTM-------PERNVVSWTAMVRGYVQEGLVSEA-ETLFW 133
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAH-----IAVNELMILEPNNSGYC 247
+ N V W +LGG R ++ A + V +++ SGYC
Sbjct: 134 QMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYC 182
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 26/223 (11%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + I+SW +M+ Y QN + REA F++M + V+ ++S +
Sbjct: 42 MPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER----NTVSWNGLISGYVKNRMVSEA 97
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R+ FD +V +A+V Y + G + + +F+++ EKN+ W ++ G
Sbjct: 98 RK--------AFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGG 149
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
L EA +FD M ++V V +++S G + E R F M I+
Sbjct: 150 LIQVRRIDEARGLFDIMPVKDV----VARTNMISGYCQEGRLAEARELFDEMPRRNVIS- 204
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+ + G ++ A +L + N V W A+L G
Sbjct: 205 ----WTTMISGYVQNGQVDVARKLFEVMP-EKNEVSWTAMLMG 242
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 205/330 (62%), Gaps = 1/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW+ +I Y Q + +AL+ F EM+ + + D+V + T+LSACA LGALD G
Sbjct: 259 MPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQG 318
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H+Y+ + G +D ++ +AL+DMY+KCG +D + VF + +K +F W+S+I GLA+H
Sbjct: 319 RWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMH 378
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
F +A+ +F +MI +EP+ +T+I++L+ACTH+GLV+ G + F M P ++H
Sbjct: 379 SFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQH 438
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGLL DA ++ + + + IW ALL CKLHRN+E+ L+ +E
Sbjct: 439 YGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKME 498
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N L N+YA V+RW K+R MK G++K PG S IE+ V++F + D S
Sbjct: 499 PQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKN-PGCSSIELNGAVHEFVSRDHS 557
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAM 330
HP S IY L L + + P + M
Sbjct: 558 HPQSQVIYELLHILTNHMVQEDHEPMMTIM 587
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 127/316 (40%), Gaps = 73/316 (23%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
R+ +TTMI Y+ REA ++ M + P+ T V SAC+ + G+
Sbjct: 96 RNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGK 155
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKC-------------------------------- 89
+ H +++ F+ V+ ++L+D Y K
Sbjct: 156 QAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKS 215
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN------------ 137
G LD + +F ++ E+++ W ++ G A GF EA +FD M N
Sbjct: 216 GDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYI 275
Query: 138 -------------------VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPE 177
V+ + V ++LSAC G +++G R+L M + I +
Sbjct: 276 QIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQG--RWLHMYIDKHGIKVD 333
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
++D+ SK G ++ A ++ + + +W +++GG +H E A I + M
Sbjct: 334 AHLSTALIDMYSKCGRIDMAWKVFQETG-DKKVFVWSSMIGGLAMHSFGEKA-IELFAKM 391
Query: 238 I---LEPNNSGYCTLL 250
I +EP+ Y +L
Sbjct: 392 IECGIEPSEITYINIL 407
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW+T+I Y + + AL F M G+ ++ + T LSA A LG L+ G
Sbjct: 225 MPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQG 284
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V ++G + V +G+AL+DMY+KCGS+ + VF + +++F WNS+I GLA H
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATH 344
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H+A+ +F++ + E P +TF+ VL+AC+ GLV+EGRR F M Y I E+EH
Sbjct: 345 GLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEH 404
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGL+++A+ELI + P+ V+WG +L CK H +++ N+L+ L+
Sbjct: 405 YGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELD 464
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + GY LL ++YA+ +W EV K+R M G K G S +E V++F D +
Sbjct: 465 PAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSA-GWSLMEAHGIVHKFLVGDMN 523
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S IY+ L ++ +L A YVP++ ++L
Sbjct: 524 HKDSARIYNMLCTINRRLAEAGYVPDVSSVL 554
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A++ Y + G + + VF + ++ W+++I G G AL +F M+
Sbjct: 198 DVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMV 257
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSKAGL 193
+ V+ N ++ LSA GL+E+G +F+ + +T V ++D+ SK G
Sbjct: 258 AQGVKANEAAIVTALSAAAQLGLLEQG--KFVHEVVKRVGMTMSVNLGAALIDMYSKCGS 315
Query: 194 LEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ A E+ + + + W +++ G H
Sbjct: 316 VAAAKEVFDAMPRR-DVFAWNSMICGLATH 344
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 200/332 (60%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW +M+ Y+QN EA + + +G P ++++L+ CA L LDLG
Sbjct: 281 MGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLG 340
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + D ++++ SALVDMY KCG + + VFF++ ++NL WN++I G A
Sbjct: 341 RALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHI 400
Query: 121 GFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A ALA+FD MI PN +T ++VL+AC+ GL +EG F +M + I P +E
Sbjct: 401 GDAWNALAVFDEMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIE 460
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL +AG+ E A E+I+ +P+ +WGALLGGCK+H E+ +A +L L
Sbjct: 461 HYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEKLFEL 520
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P +SG LL NM A RWAE T +R MK +GI+K PG SWI + V+ F A D
Sbjct: 521 DPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKD-PGRSWITWKNIVHVFQAKDT 579
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+H + EI + L+KL Q++ A Y+P+ + L
Sbjct: 580 THEMNSEIQALLAKLKGQMQGAGYMPDTQYAL 611
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 9/283 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++W ++T + + E ++A+ ++ +G P+ V++ +ACA + L LG
Sbjct: 180 MPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLG 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H +V + GFD DV + +++VD Y KC + ++ LVF + +N W S++ A +
Sbjct: 240 EQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQN 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
G EA ++ EP S+L+ C AGL+ R L S I +
Sbjct: 300 GAEEEAFLVYLGARRAGEEPTDFMVSSLLTTC--AGLLGLDLGRALHAVAARSCIDANIF 357
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+VD+ K G ++DA E + Q N V W A++GG H +AV + MI+
Sbjct: 358 VASALVDMYGKCGGIQDA-EQVFFEMPQRNLVTWNAMIGG-YAHIGDAWNALAVFDEMIM 415
Query: 240 EPNNSGYCTLLLNMYAEVSRWA---EVTKIRVAMKE-LGIEKR 278
+ ++N+ SR E ++ MK+ GIE R
Sbjct: 416 GRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPR 458
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG---ALD 58
P+ ++S+T I+ +Q+ + +AL AF M G+ P+ T + A A A
Sbjct: 76 PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAA 135
Query: 59 LGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+G ++H ++ G+ D ++ A +DMY K G L + +F ++ +N+ WN+++
Sbjct: 136 VGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNA 195
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITP 176
+ G E + + + PN V+ + +AC + G + CG+
Sbjct: 196 VLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFD--K 253
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+V MVD K + A L+ N+V W
Sbjct: 254 DVSVSNSMVDFYGKCRCMGKA-RLVFDGMGVRNSVSW 289
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 199/316 (62%), Gaps = 3/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++ SW +I Y+QN + E L +F M + G + P+ TM VLSACA LGA D
Sbjct: 147 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 206
Query: 60 GREIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ +H Y +G++ +DV + +AL+DMY KCG+++ ++ VF ++ ++L WN++I GLA
Sbjct: 207 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 266
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL +F M + P+ VTF+ VL AC H GLVE+G F SM +SI PE+
Sbjct: 267 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 326
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EH GC+VDLLS+AG L A+E I + +AVIW LLG K+++ ++I +A+ EL+
Sbjct: 327 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIK 386
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N +L N+Y + R+ + +++VAM++ G +K G SWIE + + +F +S
Sbjct: 387 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEA-GVSWIETDDGLVKFYSSG 445
Query: 299 KSHPASDEIYSSLSKL 314
+ HP ++E+ L +L
Sbjct: 446 EKHPRTEELQRILREL 461
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 24/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M ++++ WT+MI Y NK A F+ +SP D V T++S +G +
Sbjct: 54 MVEKNVVLWTSMINGYLLNKDLVSARRYFD------LSPERDIVLWNTMISGYIEMGNML 107
Query: 59 LGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R + FD DV + +++ YA G ++ VF + E+N+F WN +I
Sbjct: 108 EARSL--------FDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLI 159
Query: 115 EGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGY 172
+G A +G E L F RM+ E +V PN T VLSAC G + G+ T GY
Sbjct: 160 KGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGY 219
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V ++D+ K G +E A+E+ + K + + + W ++ G H
Sbjct: 220 N-KVDVNVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAH 268
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 211/328 (64%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +++W++M Y QN+ + +AL F + +G+ DQ M++V+ ACA L A+ G
Sbjct: 226 MPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEG 285
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++++ + + GF ++++ S+L+DMYAKCG ++ S VF + ++N+ WN++I GL+ H
Sbjct: 286 KQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRH 345
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ E + +F++M + PN VTF+SVLSAC H GLV++G++ F MT + + P V H
Sbjct: 346 ARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFH 405
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD LS+AG + +A +LI F +A +WG+LL C+ H NLE+A +A +L +E
Sbjct: 406 YSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIE 465
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL NMYA +W EV K+R +KE ++K G SWIE++ KV+ F +++
Sbjct: 466 PHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKE-RGKSWIEIKDKVHLFMVGERN 524
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP EIYS L+++ ++L+ Y E +
Sbjct: 525 HPKIVEIYSKLNEVMDELQKLGYKVETQ 552
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 139/253 (54%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R ++SW TMI +QN + EALD +M+ G + T+++VL ACA AL
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + ++ D++V++ +AL+D+YAKCG + ++ VF + ++++ W+S+ G +
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEVE 179
+ALA+F + ++ + SV+ AC A ++E + L G+ V
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVA 304
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN-ELM 237
++D+ +K G +E++ ++ R + + N V+W A++ G H R+LE+ + + M
Sbjct: 305 --SSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQM 361
Query: 238 ILEPNNSGYCTLL 250
L PN+ + ++L
Sbjct: 362 GLSPNDVTFVSVL 374
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L CA L G+ H ++ +G D+ + L++MY+KCGS+D + VF ++ ++
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
L WN++I L +G +EAL + +M E + T SVL AC + E +
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC-QLLH 188
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ V ++D+ +K GL++DA+ + S + V W ++ G
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP-DRSVVTWSSMAAG 240
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/161 (77%), Positives = 143/161 (88%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDIISWTTM+ CY+QNK+F EAL FN+M +GI PD+VTMATV+SACAHLGALDLG
Sbjct: 133 MHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLG 192
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIHLYVMQ GFD+DVYIGS+L+DMYAKCGSLDRSLLVFFKL+EKNLFCWNS+IEGLA H
Sbjct: 193 KEIHLYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAH 252
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
G+A EAL MF +M E ++PNGVTFISVL+AC HAGLVEEG
Sbjct: 253 GYAKEALEMFRKMGREKIKPNGVTFISVLNACAHAGLVEEG 293
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 127/277 (45%), Gaps = 27/277 (9%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
T ++ YS + E+ F+EM D AT++++ A +G + R +
Sbjct: 49 TALVDFYSTVGRIIESKKVFDEMPER----DIFAWATMVTSLARIGDMSSARRL------ 98
Query: 70 IGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
FD+ + + L+ Y+K L+ + +F ++ E+++ W +++ A + E
Sbjct: 99 --FDMMPEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGE 156
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCM 184
AL +F++MI + P+ VT +V+SAC H G ++ G+ L M G+ + +V +
Sbjct: 157 ALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDL--DVYIGSSL 214
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNELMILE 240
+D+ +K G L+ +L L+ + N W +++ G H LE+ E ++
Sbjct: 215 IDMYAKCGSLDRSL-LVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREK--IK 271
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277
PN + + +LN A E +R E GI K
Sbjct: 272 PNGVTFIS-VLNACAHAGLVEEGLALRKKAPERGIAK 307
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M S I P T ++++ AC + G +H +V + G + V++ +ALVD Y+ G
Sbjct: 1 MLRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGR 60
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV 138
+ S VF ++ E+++F W +++ LA G A +FD M +N
Sbjct: 61 IIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNT 107
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 205/326 (62%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +DIISW T+I YS+N EAL FN + + SPD+ T+A VL ACA L A D
Sbjct: 307 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 366
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GREIH Y+M+ G+ D ++ ++LVDMYAKCG+L + ++F + K+L W +I G +
Sbjct: 367 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 426
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HGF EA+A+F++M +E + ++F+S+L AC+H+GLV+EG R F M I P VE
Sbjct: 427 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 486
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L++ G L A I + P+A IWGALL GC++H ++++A ++ L
Sbjct: 487 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 546
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N+GY L+ N+YAE +W +V ++R + + G+ K PG SWIE++ +V F A D
Sbjct: 547 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN-PGCSWIEIKGRVNIFVAGDS 605
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
S+P ++ I + L K+ ++ Y P
Sbjct: 606 SNPETENIEAFLRKVRARMIEEGYSP 631
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++S+T+MI Y++ EA+ F EM+ GISPD T+ VL+ CA LD G
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 265
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ + D+++ +AL+DMYAKCGS+ + LVF ++R K++ WN+II G + +
Sbjct: 266 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 325
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+A+EAL++F+ ++ E P+ T VL AC ++GR M GY V
Sbjct: 326 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 385
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +VD+ +K G L A ++ + V W ++ G +H
Sbjct: 386 AN--SLVDMYAKCGALLLA-HMLFDDIASKDLVSWTVMIAGYGMH 427
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N + L F +M SGI D T+ +V + CA + LG
Sbjct: 105 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ F + + L+DMY+KCG LD + VF ++ ++++ + S+I G A
Sbjct: 165 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 224
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITPE 177
G A EA+ +F+ M E + P+ T +VL+ C L++EG+R G+ I
Sbjct: 225 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 284
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +++A EL+ S + + W ++GG
Sbjct: 285 ----NALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIGG 321
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 101/194 (52%), Gaps = 1/194 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ +++ F ++ F +M +SG+ D T + V + + L ++ G ++H +++
Sbjct: 12 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +G++LV Y K +D + VF ++ E+++ WNSII G +G A + L+
Sbjct: 72 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
+F +M+ +E + T +SV + C + L+ G R S+ + E ++D+
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSREDRFCNTLLDMY 190
Query: 189 SKAGLLEDALELIR 202
SK G L+ A + R
Sbjct: 191 SKCGDLDSAKAVFR 204
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 211/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D ISW ++I QN +F L F M + P V+ ++V+ ACAHL AL LG
Sbjct: 288 LPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG 347
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++GFD + +I S+LVDMYAKCG++ + VF ++ ++++ W +II G A+H
Sbjct: 348 RQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMH 407
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+++F+ M+ + V P V F++VL+AC+HAGLV+EG R F SM + I P +EH
Sbjct: 408 GHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEH 467
Query: 181 YGCMVDLLSKAGLLEDALELIRSSK-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
Y + DLL +AG LE+A + I + + QP +W LL C+ H+++E+A +++L+ +
Sbjct: 468 YAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSV 527
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N G L+ N+Y+ RW + ++R+ M++ G+ K+ P SWIE+ +V+ F A DK
Sbjct: 528 DSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGL-KKTPACSWIEVGNQVHTFMAGDK 586
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP D+I +L L EQ++ YV + +L
Sbjct: 587 SHPYYDKINKALDVLLEQMEKEGYVIDTNQVL 618
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 5/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP RD++SW T+I ++QN + EALD EM KN + PD T++++L A ++
Sbjct: 186 MPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNK 245
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+EIH Y ++ GFD DV+IGS+L+DMYAKC L+ SL F+ L K+ WNSII G
Sbjct: 246 GKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQ 305
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEV 178
+G L F RM+ ENV+P V+F SV+ AC H + GR+ + G+ +
Sbjct: 306 NGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFI 365
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G ++ A + + + V W A++ GC +H
Sbjct: 366 A--SSLVDMYAKCGNIKMA-RYVFDRIDKRDMVAWTAIIMGCAMH 407
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
+W+++I CY+ + + +FN M++ + P++ ++L A L L +H
Sbjct: 77 AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC---------------WNS 112
+++G D D+YI +AL++ YAK + + VF K E + C WN+
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196
Query: 113 IIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
+I G A +G EAL M M ++P+ T S+L V +G+ G
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKE-----IHG 251
Query: 172 YSITP----EVEHYGCMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGC 220
Y++ +V ++D+ +K LE +L R+ P +A+ W +++ GC
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLECSL---RAFYILPRKDAISWNSIIAGC 303
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 205/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ W +++ Y+ +E+ + F EM S I D +TM T+++ C+ L AL+ G
Sbjct: 672 MEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHG 731
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++H +++ GF + V + +ALVDMY+KCG++ ++ VF + KN+ WN++I G +
Sbjct: 732 DQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSK 791
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + EAL +++ M + + PN VTF+++LSAC+H GLVEEG R F SM Y+I + E
Sbjct: 792 HGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE 851
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL +AG LEDA E + +P WGALLG C++H+++++ +A L L
Sbjct: 852 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P N G ++ N+YA RW EV IR MK G++K PG SWIE+ ++ F A K
Sbjct: 912 DPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKD-PGVSWIEINSEIQIFHAGSK 970
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP ++EIY++L L Q K Y+P+ +L
Sbjct: 971 THPKTEEIYNNLRHLTLQSKGLGYIPDTSFIL 1002
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+++W +I Y + + EA F+ M G+ PD T A+ L C L + D G+++H
Sbjct: 241 VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHS 300
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++ GF D ++G+AL+DMYAKC + L VF ++ E+N WNSII A G ++
Sbjct: 301 KLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFND 360
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCM 184
AL +F RM + N S+L A AGL + G+ R L + + ++ +
Sbjct: 361 ALVLFLRMQESGYKSNRFNLGSILMAS--AGLADIGKGRELHGHLVRNLLNSDIILGSAL 418
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG----CKLHRNLEIAHIAVNELMILE 240
VD+ SK G++E+A ++ R S + N V + ALL G K LE+ H +E I +
Sbjct: 419 VDMYSKCGMVEEAHQVFR-SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGI-Q 476
Query: 241 PNNSGYCTLL 250
P+ + TLL
Sbjct: 477 PDQFTFTTLL 486
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
R+ +S+ ++ Y Q + EAL+ +++M++ GI PDQ T T+L+ CA+ + GR+
Sbjct: 441 RNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQ 500
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++++ ++ + + LV MY++CG L+ + +F ++ E+N + WNS+IEG +G
Sbjct: 501 IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE 560
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL +F +M ++P+ + S+LS+C ++GR
Sbjct: 561 TQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGR 600
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 9/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ ++W ++I+ +Q F +AL F M+ SG ++ + ++L A A L + G
Sbjct: 337 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKG 396
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H ++++ + D+ +GSALVDMY+KCG ++ + VF L E+N +N+++ G
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITP 176
G A EAL ++ M E+ ++P+ TF ++L+ C + +GR+ + +I
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
E E +V + S+ G L A E+ + NA W +++ G
Sbjct: 517 ETE----LVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEG 554
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 34/255 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ SW +MI Y QN + +EAL F +M+ +GI PD +++++LS+C L G
Sbjct: 540 MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG 599
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV---------------------- 98
RE+H ++++ + + + LVDMYAKCGS+D + V
Sbjct: 600 RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNS 659
Query: 99 ---------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
F ++ ++N WNSI+ G A G E+ F M+ ++E + +T ++++
Sbjct: 660 GRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV 719
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
+ C+ +E G + L + G+ + V +VD+ SK G + A + + +
Sbjct: 720 NLCSSLPALEHGDQLHSLIIKKGF-VNCSVVLETALVDMYSKCGAITKARTVFDNMNGK- 777
Query: 209 NAVIWGALLGGCKLH 223
N V W A++ G H
Sbjct: 778 NIVSWNAMISGYSKH 792
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 11/255 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ +W TMI Y++ + E L + M+ SG D+ T +V+ AC + +
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV 194
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++ V++ G + ++++G ALVD YA+ G +D ++ ++ ++ WN++I G
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS--MTCGYSITPEV 178
EA +FDRM+ V P+ TF S L C A +G ++ S + CG+ V
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCG-ALRSRDGGKQVHSKLIACGFKGDTFV 313
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ ++D+ +K E L++ + N V W +++ + H ++
Sbjct: 314 GN--ALIDMYAKCDDEESCLKVF-DEMGERNQVTWNSIISA-----EAQFGHFNDALVLF 365
Query: 239 LEPNNSGYCTLLLNM 253
L SGY + N+
Sbjct: 366 LRMQESGYKSNRFNL 380
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 35 SGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDR 94
S ++P + ++++ C + G+ IH ++ G++ D Y+ + ++ +YA+ G LD
Sbjct: 67 SDVNP--LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD 124
Query: 95 ---SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+ +F ++ E+NL WN++I A E L ++ RM + TF SV+ A
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKA 184
Query: 152 CTHAGLVEE--GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
C +E+ G R+ S + + G +VD ++ G ++DA+ + + +
Sbjct: 185 CI---AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIE-GTS 240
Query: 210 AVIWGALLGG 219
V W A++ G
Sbjct: 241 VVTWNAVIAG 250
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 197/326 (60%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WTTM+ Y + KQ AL F+ M +G P+QVT L AC+ L AL G
Sbjct: 286 MPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEG 345
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + F D ++ SAL+++YAKCG + + +F REK+L WN II A H
Sbjct: 346 KQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHH 405
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ ++++M PN VT++ +LSAC+H+GLV+EG + F SM SI EH
Sbjct: 406 GVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEH 465
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
Y C++DL S+AG L+DA LI K +P + +W ALLGGC H N I ++A L+
Sbjct: 466 YTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQA 525
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+N+G TLL N+YA +W E +IR M G++K+ PG SWIE+ KV+ F A DK
Sbjct: 526 EPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQ-PGCSWIEVANKVHVFVARDK 584
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
SH SD IY L + +++ VP
Sbjct: 585 SHSESDLIYGLLQNIHHMMRIVGTVP 610
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 131/334 (39%), Gaps = 78/334 (23%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW MI+ Y++N + EALD F +M I+ +C
Sbjct: 224 MPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIA-----------SC--------- 263
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+M GF + L R+ +F ++ E+N+ W +++ G
Sbjct: 264 -----NIMVTGF--------------IQNKDLKRARELFDEMPERNVVTWTTMMNGYLKG 304
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F M+ PN VTF+ L AC+ + EG ++ M C + +
Sbjct: 305 KQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEG-KQVHQMICKTTFQFDAFV 363
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++++ +K G + A +L S+ + + + W ++ H + I I + E M
Sbjct: 364 ESALMNVYAKCGEIGLARKLFDLSR-EKDLISWNGIIAAYA-HHGVGIEAILLYEKMQEN 421
Query: 239 -LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
PN+ Y LL C S ++ K+++ +
Sbjct: 422 GYRPNDVTYVVLL--------------------------SACSHSGLVDEGLKIFESMVN 455
Query: 298 DKSHPASDEIYSSL-------SKLDEQLKLASYV 324
D+S DE Y+ L +LD+ +L Y+
Sbjct: 456 DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYL 489
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 112/258 (43%), Gaps = 57/258 (22%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D++SWT +++ Y++ R+A + F+ PD
Sbjct: 69 PDWDVVSWTALVSAYARRGMLRDARELFDR-------PDARR------------------ 103
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+V +AL+ YA+ +D + +F ++ ++N+ WN+++E A G
Sbjct: 104 -------------NVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAG 150
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VE 179
+A A+FDRM + + +L+ +G V++ R F M PE V
Sbjct: 151 RVGDACALFDRMPVRDAGSWNI----LLATLVRSGSVDKARELFGRM-------PERDVM 199
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG-CKLHRNLEIAHIAVNELMI 238
+ MVD ++++G +++A L S + N V W A++ G + HR E A++ M
Sbjct: 200 AWTTMVDGVARSGKVDEARVLFDSMP-ERNVVSWNAMISGYTRNHRIDE----ALDLFMK 254
Query: 239 LEPNNSGYCTLLLNMYAE 256
+ + C +++ + +
Sbjct: 255 MPERDIASCNIMVTGFIQ 272
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW TM+ Y+ + +A F+ M + +AT++ + G++D
Sbjct: 131 MPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRS----GSVDKA 186
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+ + + DV + +VD A+ G +D + ++F + E+N+ WN++I G +
Sbjct: 187 RELFGRMPE----RDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRN 242
Query: 121 GFAHEALAMFDRMIYENV 138
EAL +F +M ++
Sbjct: 243 HRIDEALDLFMKMPERDI 260
>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1736
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 197/331 (59%), Gaps = 3/331 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD +SW +MI+ Y N+ +A+D M G D T AT+LSACA + L+ G E
Sbjct: 654 TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGME 713
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H ++ + DV +GSALVDMY+KCG +D + F + +N++ WNS+I G A HG
Sbjct: 714 VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGH 773
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+AL +F RM+ + P+ VTF+ VLSAC+H G VEEG F SM+ Y ++P VEH+
Sbjct: 774 GEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFS 833
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC--KLHRNLEIAHIAVNELMILE 240
CMVDLL +AG L++ + I S +PN +IW +LG C RN E+ A L+ LE
Sbjct: 834 CMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELE 893
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+ LL NMYA +W +V K R AMKE ++K G SW+ M+ V+ F A DK
Sbjct: 894 PQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKE-AGCSWVTMKDGVHVFVAGDKL 952
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D IY L +L+ +++ A Y+P+ + L
Sbjct: 953 HPEKDLIYDKLRELNRKMRDAGYIPQTKYAL 983
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 2/220 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW ++I+ QN+ +A ++F+ M+ +G P T+ + LS+CA LG + LG
Sbjct: 448 MVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLG 507
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-V 119
+IH +++G D DV + +AL+ +YA+ G L VF + E + WNS+I L+
Sbjct: 508 EQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDS 567
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+A+ F +M+ + VTFI++LSA + L E + ++ Y ++ +
Sbjct: 568 EASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL-HEVSHQIHALVLKYCLSDDTA 626
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ K G + + ++ + V W +++ G
Sbjct: 627 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 666
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALD- 58
M R+++S ++ + KQ A F+EMK+ GI+ D + +LSA + L+
Sbjct: 343 MGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--SYVVLLSAFSEFSVLEE 400
Query: 59 ---LGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
GRE+H +V++ G D V IG+ LV+MYAK G++ + VF + EK+ WNS+I
Sbjct: 401 GRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLI 460
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
GL + + +A F RM P+ T IS LS+C G + G +
Sbjct: 461 SGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQ 509
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 118/266 (44%), Gaps = 9/266 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG--ALD 58
M R++++W +I+ Y+QN + EA F +M +G P+ + L AC G
Sbjct: 132 MSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 191
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGL 117
LG +IH + + + DV + + L+ MY C S + + VF + +N WNSII
Sbjct: 192 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVY 251
Query: 118 AVHGFAHEALAMFDRMIYENV----EPNGVTFISVL-SACTHAGLVEEGRRRFLSMTCGY 172
+ G A A +F M E + +PN TF S++ +AC+ + L+
Sbjct: 252 SRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKS 311
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
++ +V ++ GL +DA + + N V L+ G + E A
Sbjct: 312 GFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVR-NVVSMNGLMVGLVKQKQGEAAAKV 370
Query: 233 VNELMILEPNNSGYCTLLLNMYAEVS 258
+E+ L NS +LL+ ++E S
Sbjct: 371 FHEMKDLVGINSDSYVVLLSAFSEFS 396
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SW +MI+ Y+++ +AL F M G PD VT VLSAC+H+G ++ G
Sbjct: 753 MPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEG 812
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLD 93
E H M + + + S +VD+ + G LD
Sbjct: 813 FE-HFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLD 846
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE+HL ++ GF ++++ + L+++Y + G L + +F ++ +NL W +I G
Sbjct: 90 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+G EA A F M+ PN F S L AC +G
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 186
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 199/328 (60%), Gaps = 3/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ SW T+I + +N EALD F M+ G+ P T+ ++LS CA L +L G
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ FD+DVY+ S L+ MY KCG L +S L+F + K++ WNSII G A H
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL +F M + + +PN VTF++ LSAC++AG+VEEG + + SM + + P
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+L +AG +A+E+I S +P+A +WG+LLG C+ H L++A +L+ +
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD- 298
EP NSG LL NMYA RWA+V ++R MK + K PG SW E+E KV+ F
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRK-SPGCSWTEVENKVHAFTRGGI 589
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP + I L +LD L+ A Y P+
Sbjct: 590 NSHPEQESILKILDELDGLLREAGYNPD 617
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 12/224 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +I+WTTM+T Y QN + +A F+ M +V+ ++L G ++
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIEDA 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ VM + V +A++ + G + ++ VF ++E+N W ++I+ +
Sbjct: 254 EEL-FEVMPVK---PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERN 309
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF EAL +F M + V P T IS+LS C + G++ + C + + +V
Sbjct: 310 GFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDV--DVY 367
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G L + +LI + ++W +++ G H
Sbjct: 368 VASVLMTMYIKCGELVKS-KLIFDRFPSKDIIMWNSIISGYASH 410
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 45/253 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+IISW +++ Y +N + EA F+ M + V+ ++ H G +D+
Sbjct: 74 MPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVHNGKVDVA 129
Query: 61 R----------EIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLD 93
++ VM IGF D D ++++ K G +D
Sbjct: 130 ESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVD 189
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ E+++ W +++ G + +A +FD M E V++ S+L
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYV 245
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G +E+ F M + P V M+ L + G + A + S K + N W
Sbjct: 246 QNGRIEDAEELFEVM----PVKP-VIACNAMISGLGQKGEIAKARRVFDSMK-ERNDASW 299
Query: 214 GALLGGCKLH-RN 225
++ K+H RN
Sbjct: 300 QTVI---KIHERN 309
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 29/274 (10%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++ I SW +M+ Y N R+A F+EM + I ++ ++S G +D R+
Sbjct: 45 SKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI----ISWNGLVSGYMKNGEIDEARK 100
Query: 63 IHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ FD+ +V +ALV Y G +D + +F+K+ EKN W ++ G
Sbjct: 101 V--------FDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFL 152
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G +A +++ MI + + + S++ G V+E R F M+ IT
Sbjct: 153 QDGRIDDACKLYE-MIPDK---DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT--- 205
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ MV + ++DA ++ + V W ++L G + +E A + E+M
Sbjct: 206 --WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVSWTSMLMGYVQNGRIEDAE-ELFEVMP 261
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
++P + C +++ + A+ ++ +MKE
Sbjct: 262 VKPVIA--CNAMISGLGQKGEIAKARRVFDSMKE 293
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 201/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISW TM+ Y N + EAL+ F M+ SG+ PD+ T+ T+LSA A L L+ G
Sbjct: 21 MPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQLCLLEHG 80
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + + + + IG+AL+DMYAKCG +++S L+F + +++ WN +I GLA H
Sbjct: 81 QSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASH 140
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F+R + E + P VTF+ VL+AC+ AGLV+EGR F MT Y I PE+EH
Sbjct: 141 GLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEH 200
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGL+ +A+++I S P+ V+W +L C++H E+ N L+ L+
Sbjct: 201 YGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIGNRLIELD 260
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G+ L ++YA +W +V ++R M E K G S IE KV++F A +
Sbjct: 261 PTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSK-VAGWSLIEARGKVHRFVAGHRE 319
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S EI L ++ +L A YVP + +L
Sbjct: 320 HEQSLEIQKMLEIIETRLAAAGYVPNVSPVL 350
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
+A+ G + +F ++ E+++ WN+++ +G EAL F RM + P+ T
Sbjct: 5 FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+++LSA L+E G + S+ S+ + ++D+ +K G +E + L+ +
Sbjct: 65 VTMLSASAQLCLLEHG-QSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQS-RLLFENM 122
Query: 206 FQPNAVIWGALLGGCKLH 223
+ + W ++ G H
Sbjct: 123 PRRDVSTWNVMICGLASH 140
>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 205/327 (62%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT +I+ ++Q Q L+ F+ M+NS + P+ T ++LSAC GAL G
Sbjct: 167 MPVRNVVTWTAIISGFAQECQVDVCLELFSVMRNSTLKPNDFTFTSLLSACTGSGALGQG 226
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H ++Q+GF +++ +AL+ MY K GS+ + +F + K++ WNS+I G A H
Sbjct: 227 TSAHCQIIQMGFHSYLHVANALISMYCKSGSVHDAFYIFNNIYSKDIVSWNSMISGYAQH 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F++M V+P+ +TF+ VLSAC HAG V+ GR F SM Y + P+++H
Sbjct: 287 GLAMQAIDLFEKMTKLGVKPDSITFLGVLSACRHAGFVQGGRNYFNSMV-EYHLRPQLDH 345
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AGL+E+AL++I PNAVIWG+LL C+LH ++ I A + ++LE
Sbjct: 346 YSCLVDLLGRAGLIEEALDIILRMPILPNAVIWGSLLSSCRLHGSVWIGIQAAEQRLLLE 405
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + L N+YA V W + K+R MK+ G+ K PG SWIE++ KV++F A D+S
Sbjct: 406 PACAATHVQLANLYASVRYWDKAAKVRKVMKDTGL-KTNPGYSWIEIKNKVHRFRAEDRS 464
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
+ EI + L L + + + YVPEL
Sbjct: 465 NTRVGEILTVLDCLLDHMMILGYVPEL 491
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G + H + GF + Y+GS+L+ +Y KCG LD + +F ++ +N+ W +II G A
Sbjct: 125 GIQFHCLAITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQ 184
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEV 178
L +F M ++PN TF S+LSACT +G + +G + G+ V
Sbjct: 185 ECQVDVCLELFSVMRNSTLKPNDFTFTSLLSACTGSGALGQGTSAHCQIIQMGFHSYLHV 244
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++ + K+G + DA I ++ + + V W +++ G H
Sbjct: 245 AN--ALISMYCKSGSVHDAF-YIFNNIYSKDIVSWNSMISGYAQH 286
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D +S+ ++++ Y+Q+ EA + F + KN ++ + +T++TVL A +H GAL +G+
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V+++G + DV +G++++DMY KCG ++ + F +++ KN+ W ++I G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +AL +F MI V PN +TF+SVL+AC+HAGL EG R F +M + + P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG L+ A +LI+ K +P+++IW +LL C++H+N+E+A I+V L L+ +
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N GY LL ++YA+ RW +V ++R+ MK G+ K PG S +E+ +V+ F D+ HP
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP-PGFSLLELNGEVHVFLIGDEEHP 547
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAM 330
++IY L++L+ +L A YV ++
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSV 575
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 145/297 (48%), Gaps = 29/297 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHL 54
+P RDI+SWT+MI Y N +A+ F ++ + + D + + +V+SAC+ +
Sbjct: 137 IPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLREKNLFCWNS 112
A L IH +V++ GFD V +G+ L+D YAK G + + +F ++ +K+ +NS
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 113 IIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGR---RRFLSM 168
I+ A G ++EA +F R++ V N +T +VL A +H+G + G+ + + M
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----R 224
+ +V ++D+ K G +E A + K N W A++ G +H +
Sbjct: 317 ----GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAK 371
Query: 225 NLEIAHIAVNELMILEPNNSGYCTLL-----LNMYAEVSRWAEVTKIRVAMKELGIE 276
LE+ ++ + PN + ++L ++ E RW K R + E G+E
Sbjct: 372 ALELFPAMIDSG--VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGV-EPGLE 425
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW ++I +++ EAL AF+ M+ + P + + + AC+ L + G++ H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
G+ D+++ SAL+ MY+ CG L+ + VF ++ ++++ W S+I G ++G A
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159
Query: 125 EALAMFDRMIYENVEPNGVTF------ISVLSACTHA---GLVE 159
+A+++F ++ + + + F +SV+SAC+ GL E
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ SWT MI Y + +AL+ F M +SG+ P+ +T +VL+AC+H G G
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
R + + G + + +VD+ + G L ++ + +++ K + W+S++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACR 467
Query: 119 VH 120
+H
Sbjct: 468 IH 469
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 204/326 (62%), Gaps = 5/326 (1%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW ++I+ Y +Q +A F M GI+PD+ T ATVL CA+L + LG++IH
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ DVYI S LVDMY+KCG L S L+F K ++ WN++I G A HG EA
Sbjct: 587 VIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 646
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ +F+RMI EN++PN VTFIS+L AC H GL+++G F M Y + P++ HY MVD
Sbjct: 647 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 706
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR-NLEIAHIAVNELMILEPNNSG 245
+L K+G ++ ALELIR F+ + VIW LLG C +HR N+E+A A L+ L+P +S
Sbjct: 707 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 766
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
TLL N+YA+ W +V+ +R M+ ++K PG SW+E++ +++ F DK+HP +
Sbjct: 767 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKE-PGCSWVELKDELHVFLVGDKAHPRWE 825
Query: 306 EIYSSLSKLDEQLKL---ASYVPELE 328
EIY L + ++K +S+VP +E
Sbjct: 826 EIYEELGLIYSEMKPFDDSSFVPGVE 851
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 43/274 (15%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S+ MIT YSQ + +AL F+ + +SG+ D+++++ V ACA + L G +I+
Sbjct: 307 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLA 366
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ +DV + +A +DMY KC +L + VF ++R ++ WN+II +G +E L
Sbjct: 367 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 426
Query: 128 AMFDRMIYENVEPNGVTFISVLSACT----------HAGLVEEGRRRFLSMTCGYSITPE 177
+F M+ +EP+ TF SVL ACT H+ +V+ G S+ C
Sbjct: 427 FLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCS------ 480
Query: 178 VEHYGCMVDLLSKAGLLEDA-------------------LELIRSSKFQPNAVIWGALLG 218
++D+ SK G++E+A LE + + + Q V W +++
Sbjct: 481 ------LIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIIS 534
Query: 219 GCKLHRNLEIAHIAVNELMIL--EPNNSGYCTLL 250
G + E A + +M + P+ Y T+L
Sbjct: 535 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVL 568
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M++ Y QN + ++++ F +M +G D T A +L C+ L LG
Sbjct: 98 MPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLG 157
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G D DV SAL+DMYAK SL VF + EKN W++II G +
Sbjct: 158 MQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 217
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
AL F M N + + SVL +C
Sbjct: 218 NLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 25/253 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK--NSGISPDQVTMATVLSACAHLGALD 58
+P ++ +SW+ +I QN AL F EM+ N+G+S Q A+VL +CA L L
Sbjct: 199 IPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVS--QSIYASVLRSCAALSELR 256
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG ++H + ++ F D + +A +DMYAKC ++ + ++F K N +N++I G +
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYS 316
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+AL +F R++ + + ++ V AC + EG + + + S++ +V
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-DLAIKSSLSLDV 375
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+D+ K L +A + + + +AV W A++ AH
Sbjct: 376 CVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIA----------AH-------- 416
Query: 239 LEPNNSGYCTLLL 251
E N GY TL L
Sbjct: 417 -EQNGKGYETLFL 428
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ++W MI Y+ + + EA+ F M I P+ VT ++L ACAH+G +D G E
Sbjct: 625 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE- 683
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+ Y+M+ + +D + S +VD+ K G + R+L + ++ E + W +++ +H
Sbjct: 684 YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIH 743
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 51 CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
CA GAL+LG++ H +++ GF ++ + L+ +Y + +VF ++ +++ W
Sbjct: 16 CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEP----------NGVTF--ISVLSACTHAGLV 158
N +I G A +A F+ M +V NG T I V AG
Sbjct: 76 NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135
Query: 159 EEGRRRFL---------SMTCGYSITPEVEHYGCMVDLLSKAGLLE------DALELIRS 203
+GR + + G I V GC D+++ + LL+ +E +R
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195
Query: 204 SKFQP--NAVIWGALLGGCKLHRNLEIA 229
+ P N+V W A++ GC + L +A
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLA 223
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 203/323 (62%), Gaps = 1/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D +SW +MI Y++N E+L F M G PDQVT VL AC + AL G I
Sbjct: 327 KDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSI 386
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ GFD + +G+ALVDMY+KCGSL S VF ++ +K+L W++++ G +HG
Sbjct: 387 HSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRG 446
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+++ D M +V P+ F S+LSAC+HAGLV EG+ F M Y++ P + HY C
Sbjct: 447 REAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSC 506
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L++A +IR+ + +P + IW ALL +LH+N+++A I+ ++ + P
Sbjct: 507 MVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKV 566
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
L N+YA RW +V ++R ++ G+ K+ PG S+IE++ V++F DKSH
Sbjct: 567 VSSYICLSNIYAAEKRWDDVERVRAMVRRKGL-KKSPGCSFIELDNMVHRFLVGDKSHQQ 625
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
+++IY+ L++L +QLK A Y P+
Sbjct: 626 TEDIYAKLNELKQQLKEAGYKPD 648
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ SW TMI+ Y++N A F+ M +G+ D T+ +LSACA L A+ G
Sbjct: 222 MAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEG 281
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ IH Y ++ IG + + + ++L++MY C + + +F ++R K+ WNS+I G A
Sbjct: 282 KVIHGYAVRNSIG-NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYA 340
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITP 176
+G A E+L +F RM + P+ VTFI+VL AC + G +L + G+
Sbjct: 341 RNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL-VKKGFDANT 399
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V +VD+ SK G L + + + V W A++ G LH
Sbjct: 400 IVG--TALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAMVAGYGLH 443
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 11/216 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W MI Y+ N ++L + EM G D T VL AC L +++GR +H V+
Sbjct: 129 WNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVV 188
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
G + D+Y+G++L+ MYAK G + + +VF ++ E++L WN++I G A + + A
Sbjct: 189 VCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFL 248
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY-----GC 183
+FD M + + T + +LSAC V+EG+ + GY++ + +Y
Sbjct: 249 VFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK-----VIHGYAVRNSIGNYNKFFTNS 303
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++++ + DA L +++ + V W +++ G
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWK-DTVSWNSMILG 338
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + ++SW+ M+ Y + + REA+ + MK + + PD ++LSAC+H G + G
Sbjct: 425 MPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEG 484
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLV 98
+EI Y M+ +++ + S +VD+ + G LD + ++
Sbjct: 485 KEI-FYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVI 523
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDI---DVYIGSALVDMYAKCGSLDRSLLVFFK 101
+L + + + G+++H ++ I F I + Y+ + L YA CG + ++ ++F
Sbjct: 63 GALLQSFTNTKSFKQGQQLHAHM--ISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDG 120
Query: 102 LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ KN F WN +I G A +G ++L ++ M+ + T+ VL AC LVE G
Sbjct: 121 IVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIG 180
Query: 162 RR 163
RR
Sbjct: 181 RR 182
>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
Length = 913
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 197/331 (59%), Gaps = 3/331 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD +SW +MI+ Y N+ +A+D M G D T AT+LSACA + L+ G E
Sbjct: 502 TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGME 561
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H ++ + DV +GSALVDMY+KCG +D + F + +N++ WNS+I G A HG
Sbjct: 562 VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGH 621
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+AL +F RM+ + P+ VTF+ VLSAC+H G VEEG F SM+ Y ++P VEH+
Sbjct: 622 GEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFS 681
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC--KLHRNLEIAHIAVNELMILE 240
CMVDLL +AG L++ + I S +PN +IW +LG C RN E+ A L+ LE
Sbjct: 682 CMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELE 741
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+ LL NMYA +W +V K R AMKE ++K G SW+ M+ V+ F A DK
Sbjct: 742 PQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKE-AGCSWVTMKDGVHVFVAGDKL 800
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D IY L +L+ +++ A Y+P+ + L
Sbjct: 801 HPEKDLIYDKLRELNRKMRDAGYIPQTKYAL 831
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 8/242 (3%)
Query: 1 MPARDIISWTTMITCYSQNK-QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP D +SW ++I S ++ +A+ F +M G +VT +LSA + L ++
Sbjct: 397 MPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEV 456
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIEGLA 118
+IH V++ D IG+AL+ Y KCG ++ +F ++ E ++ WNS+I G
Sbjct: 457 SHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYI 516
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS--ITP 176
+ H+A+ + M+ + + TF ++LSAC +E G CG +
Sbjct: 517 HNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGME---VHACGIRACLES 573
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+V +VD+ SK G ++ A + N W +++ G H + E A +
Sbjct: 574 DVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRM 632
Query: 237 MI 238
M+
Sbjct: 633 ML 634
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 24/232 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG--ALD 58
M R++++W +I+ Y+QN + EA F +M +G P+ + L AC G
Sbjct: 160 MSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 219
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGL 117
LG +IH + + + DV + + L+ MY C S + + VF + +N WNSII
Sbjct: 220 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVY 279
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+ G A A +F M E + G +F A + ++EEGRR+ G +
Sbjct: 280 SRRGDAVSAYDLFSSMQKEGL---GFSF-KPNDAFSEFSVLEEGRRK------GREVHAH 329
Query: 178 VEHYGC----------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V G +V++ +K+G + DA + + ++V W +L+ G
Sbjct: 330 VIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE-LMVEKDSVSWNSLISG 380
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-----PDQVTMATVLSACAHLGALD 58
R+ ISW ++I+ YS+ A D F+ M+ G+ D + +VL
Sbjct: 267 RNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEE-----GRR 321
Query: 59 LGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
GRE+H +V++ G D V IG+ LV+MYAK G++ + VF + EK+ WNS+I GL
Sbjct: 322 KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 381
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-GLVEEGRRRFLSMTCG 171
+ + +A MF M E + V++ SV+ A + + V + + FL M G
Sbjct: 382 DQNECSEDAAEMFSLM----PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG 432
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SW +MI+ Y+++ +AL F M G PD VT VLSAC+H+G ++ G
Sbjct: 601 MPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEG 660
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLD 93
E H M + + + S +VD+ + G LD
Sbjct: 661 FE-HFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLD 694
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+HL ++ GF ++++ + L+++Y + G L + +F ++ +NL W +I G +
Sbjct: 119 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 178
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
G EA A F M+ PN F S L AC +G
Sbjct: 179 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D +S+ ++++ Y+Q+ EA + F + KN ++ + +T++TVL A +H GAL +G+
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V+++G + DV +G++++DMY KCG ++ + F +++ KN+ W ++I G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +AL +F MI V PN +TF+SVL+AC+HAGL EG R F +M + + P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG L+ A +LI+ K +P+++IW +LL C++H+N+E+A I+V L L+ +
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N GY LL ++YA+ RW +V ++R+ MK G+ K PG S +E+ +V+ F D+ HP
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP-PGFSLLELNGEVHVFLIGDEEHP 547
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAM 330
++IY L++L+ +L A YV ++
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSV 575
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 145/297 (48%), Gaps = 29/297 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHL 54
+P R+I+SWT+MI Y N +A+ F ++ + + D + + +V+SAC+ +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLREKNLFCWNS 112
A L IH +V++ GFD V +G+ L+D YAK G + + +F ++ +K+ +NS
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 113 IIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGR---RRFLSM 168
I+ A G ++EA +F R++ V N +T +VL A +H+G + G+ + + M
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----R 224
+ +V ++D+ K G +E A + K N W A++ G +H +
Sbjct: 317 ----GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAK 371
Query: 225 NLEIAHIAVNELMILEPNNSGYCTLL-----LNMYAEVSRWAEVTKIRVAMKELGIE 276
LE+ ++ + PN + ++L ++ E RW K R + E G+E
Sbjct: 372 ALELFPAMIDSG--VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGV-EPGLE 425
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW ++I +++ EAL AF+ M+ + P + + + AC+ L + G++ H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
G+ D+++ SAL+ MY+ CG L+ + VF ++ ++N+ W S+I G ++G A
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 125 EALAMFDRMIYENVEPNGVTF------ISVLSACTHA---GLVE 159
+A+++F ++ + + + F +SV+SAC+ GL E
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ SWT MI Y + +AL+ F M +SG+ P+ +T +VL+AC+H G G
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
R + + G + + +VD+ + G L ++ + +++ K + W+S++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACR 467
Query: 119 VH 120
+H
Sbjct: 468 IH 469
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 197/332 (59%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W MI Y + EALD F +M+ G+ P ++ ++LS CA L +L G
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++ FD DVY+ S L+ MY KCG L ++ LVF + K++ WNSII G A H
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M PN VT I++L+AC++AG +EEG F SM + +TP VEH
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C VD+L +AG ++ A+ELI S +P+A +WGALLG CK H L++A +A +L E
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD-K 299
P+N+G LL ++ A S+W +V +R M+ + K PG SWIE+ +KV+ F K
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSK-FPGCSWIEVGKKVHMFTRGGIK 589
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP I L K D L+ A Y P+ +L
Sbjct: 590 NHPEQAMILMMLEKTDGLLREAGYSPDCSHVL 621
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++WTTMIT Y QN + A F M +V+ ++L G ++
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDA 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E VM + V +A++ + + G + ++ VF + +++ W +I+
Sbjct: 254 EEF-FEVMPMK---PVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERK 309
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--------RF------- 165
GF EAL +F +M + V P+ + IS+LS C ++ GR+ +F
Sbjct: 310 GFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVA 369
Query: 166 -----LSMTCGYSI----------TPEVEHYGCMVDLLSKAGLLEDALELIR---SSKFQ 207
+ + CG + + ++ + ++ + GL E+AL++ SS
Sbjct: 370 SVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTM 429
Query: 208 PNAVIWGALLGGC----KLHRNLEI 228
PN V A+L C KL LEI
Sbjct: 430 PNKVTLIAILTACSYAGKLEEGLEI 454
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT M+ Y Q EA F M ++V+ + G +D
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLIDDGRIDKA 160
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+++ +M + DV + ++ + G +D + L+F ++RE+N+ W ++I G +
Sbjct: 161 RKLY-DMMPVK---DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQN 216
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
A +F+ M E V++ S+L T +G +E+ F M
Sbjct: 217 NRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ LV Y K + + VF + E+N+ W ++++G G EA ++F RM E
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM----PE 138
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
N V++ + G +++ R+ + M +V M+ L + G +++A
Sbjct: 139 RNEVSWTVMFGGLIDDGRIDKARKLYDMMP-----VKDVVASTNMIGGLCREGRVDEA-R 192
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
LI + N V W ++ G + + +++A
Sbjct: 193 LIFDEMRERNVVTWTTMITGYRQNNRVDVAR 223
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 127/299 (42%), Gaps = 31/299 (10%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ I SW ++++ Y N +EA F+EM + V+ ++S + R
Sbjct: 46 KAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWNGLVSGYIKNRMIVEARN- 100
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
V ++ + +V +A+V Y + G + + +F+++ E+N W + GL G
Sbjct: 101 ---VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRI 157
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A ++D M ++V V +++ G V+E R F M +T +
Sbjct: 158 DKARKLYDMMPVKDV----VASTNMIGGLCREGRVDEARLIFDEMRERNVVT-----WTT 208
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M+ + ++ A +L + V W ++L G L +E A E+M ++P
Sbjct: 209 MITGYRQNNRVDVARKLFEVMP-EKTEVSWTSMLLGYTLSGRIEDAE-EFFEVMPMKPVI 266
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM----ERKVYQFAASD 298
+ C ++ + EV E++K R + E R ++W M ERK ++ A D
Sbjct: 267 A--CNAMIVGFGEV---GEISKARRVFDLM--EDR-DNATWRGMIKAYERKGFELEALD 317
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
++ G ++ + F L+ K + WNSI+ G +G EA +FD M NV V++
Sbjct: 28 SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWN 83
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204
++S ++ E R F + PE V + MV + G++ +A L
Sbjct: 84 GLVSGYIKNRMIVEARNVF-------ELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136
Query: 205 KFQPNAVIWGALLGG 219
+ N V W + GG
Sbjct: 137 P-ERNEVSWTVMFGG 150
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 196/320 (61%), Gaps = 1/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +SWT +IT + Q+KQ +AL+ F +M G P+ +T+ VLSACA +GALDLG
Sbjct: 211 MPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + ++ + +AL+DMYAK GS+ + VF +++ K+ F W ++I V
Sbjct: 271 RAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQ 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F M+ + PN VTF+SVLSAC+HAGL++EGR F M Y I P +EH
Sbjct: 331 GNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEH 390
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + GLLE+A LI +P+ VIW +LL C H N +A IA E++ E
Sbjct: 391 YGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKRE 450
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL NMYA +RW E +R M I K+ PG SWIE++ V++F DKS
Sbjct: 451 PGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKK-PGCSWIEVDGVVHEFLVEDKS 509
Query: 301 HPASDEIYSSLSKLDEQLKL 320
H A EIY +L + LK+
Sbjct: 510 HDARREIYVTLEIMARHLKM 529
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 41/260 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P DIIS+T++++ + + +A+ F+ SG PD LSA LG +G
Sbjct: 79 IPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG------------------------------ 90
+H + + G D ++ + +ALVDMY +CG
Sbjct: 139 SVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKC 198
Query: 91 -SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+D +L F+++ K+ W ++I G +AL +F +M+ E PN +T + VL
Sbjct: 199 VGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVL 258
Query: 150 SACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
SAC G ++ GR GY + T + ++D+ +K+G + A + +
Sbjct: 259 SACADIGALDLGR-----AIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQ 313
Query: 206 FQPNAVIWGALLGGCKLHRN 225
+ +A W ++ + N
Sbjct: 314 MK-DAFTWTTMISSFTVQGN 332
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 198/327 (60%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +S+T +I+ Y QN E L F EM+ SGI+P++ T+A+VL ACAHL L G
Sbjct: 386 MDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG 445
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H Y + GF D I +AL+DMYAKCG +D + VF ++ ++ + WN++I +H
Sbjct: 446 SCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIH 505
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +FD M E ++P+ VTFI ++SAC+H+GLV EG+ F +MT + I P +EH
Sbjct: 506 GIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEH 565
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+AGL ++ I +P+ +WGALL C++++N+E+ ++ L
Sbjct: 566 YACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG 625
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF-AASDK 299
P ++G LL NMY+ V RW + ++R KE G EK PG SWIE+ V+ F +
Sbjct: 626 PESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKS-PGCSWIEISGVVHTFLGGGYR 684
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP +I + L +L ++K Y E
Sbjct: 685 SHPQLTQISNKLDELLVEMKRLGYQAE 711
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 21/230 (9%)
Query: 1 MPAR--DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP R +++ W +I Y+ N + EA+D + +M GI+P++ T VL AC+ L
Sbjct: 77 MPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEAS 136
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
GREIH + ++ + +VY+ +ALVD YAKCG LD + VF K+ ++++ WNS+I G +
Sbjct: 137 EGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFS 196
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLS-MT 169
+H +++ +A + +V PN T + VL A + G RR F+ +
Sbjct: 197 LHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVV 256
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G I +D+ K ++ A + N V W A++G
Sbjct: 257 VGTGI----------LDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 6/198 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM---KNSGISPDQVTMATVLSACAHLGALDLG 60
++ ++W+ M+ Y REAL+ F ++ K+ I VT+ATV+ CA+L L G
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y ++ GF +D+ +G+ L+ MYAKCG ++ ++ F ++ ++ + +II G +
Sbjct: 345 TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQN 404
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEVE 179
G + E L MF M + P T SVL AC H AGL ++ CG+ T +
Sbjct: 405 GNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGF--TADTM 462
Query: 180 HYGCMVDLLSKAGLLEDA 197
++D+ +K G ++ A
Sbjct: 463 ICNALIDMYAKCGKIDTA 480
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 117/225 (52%), Gaps = 10/225 (4%)
Query: 1 MPARDIISWTTMITCYSQNK-QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
M RD+++W +MI+ +S ++ + E +M+N +SP+ T+ VL A A + +L
Sbjct: 180 MHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRH 238
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
G+EIH + ++ GF DV +G+ ++D+Y KC +D + +F + KN W++++
Sbjct: 239 GKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYV 298
Query: 119 VHGFAHEALAMFDRMIY---ENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSI 174
V F EAL +F +++ + + + VT +V+ C + + G ++ G+ +
Sbjct: 299 VCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL 358
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V + ++ + +K G++ A+ + +AV + A++ G
Sbjct: 359 DLMVGN--TLLSMYAKCGIINGAMRFFNEMDLR-DAVSFTAIISG 400
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQ----------IGFDIDVYIGSALVDMYAKCGSLDR 94
+L +C +L G+ IH ++++ FD+ LVD+Y C L
Sbjct: 13 TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPF---EKLVDLYIACSELKI 69
Query: 95 SLLVFFKL--REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ VF K+ R KN+ WN +I A +G EA+ ++ +M+ + PN TF VL AC
Sbjct: 70 ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKAC 129
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ EGR + + V +VD +K G L+DA E+ + + V
Sbjct: 130 SALKEASEGREIHCDIK-RLRLESNVYVSTALVDFYAKCGCLDDAKEVF-DKMHKRDVVA 187
Query: 213 WGALLGGCKLHRNL--EIAHIAVNELMILEPNNS 244
W +++ G LH E+A + V + PN+S
Sbjct: 188 WNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSS 221
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 208/334 (62%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + + SW MI+ Y+QN A+ F +M + P+ +T+++ LSACA LGAL LG
Sbjct: 374 MPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG 433
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + + +VY+ +AL+DMYAKCGS+ + +F + KN+ WN++I G +H
Sbjct: 434 KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLH 493
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL ++ M+ ++ P TF+SVL AC+H GLVEEG + F SMT Y+I P +EH
Sbjct: 494 GQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEH 553
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAV---IWGALLGGCKLHRNLEIAHIAVNELM 237
CMVDLL +AG L++A ELI S+F +AV +WGALLG C +H++ ++A +A +L
Sbjct: 554 CTCMVDLLGRAGQLKEAFELI--SEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLF 611
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+P NSGY LL N++ +++E +R K + K PG + IE+ K + F A
Sbjct: 612 ELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVK-TPGYTLIEIGNKPHVFMAG 670
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D++HP S+ IYS L KL ++ A Y PE EA L
Sbjct: 671 DRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAAL 704
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 115/225 (51%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D++++ +I+ YS N +++ F E+ G+ P+ T+ ++ + G L
Sbjct: 273 MEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLA 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +V++ GF + + +A+ ++ + ++ + F + EK + WN++I G A +
Sbjct: 333 QCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQN 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G A+A+F++M+ NV PN +T S LSAC G + G+ R ++ + P V
Sbjct: 393 GLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE---DLEPNV 449
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G + +A + + + N V W A++ G LH
Sbjct: 450 YVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLH 493
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 138/303 (45%), Gaps = 43/303 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P+ D + W T++ S + EA+++F M G + PD T+A+VL A A + + +
Sbjct: 175 VPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTM 230
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR +H + + G ++ + L+ +Y+KCG ++ + +F + + +L +N++I G +V
Sbjct: 231 GRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSV 290
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFIS-----------VLSACTHAGLVEEG------- 161
+G ++ +F ++ + PN T ++ +L+ C H +++ G
Sbjct: 291 NGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPV 350
Query: 162 RRRFLSMTC----------GYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS---KF 206
++ C + PE +E + M+ ++ GL E A+ L
Sbjct: 351 STAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNV 410
Query: 207 QPNAVIWGALLGGCKLHRNLEIA---HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
+PN + + L C L + H + E LEPN T L++MYA+ +E
Sbjct: 411 RPNPITISSTLSACAQLGALSLGKWLHRIITE-EDLEPNVY-VMTALIDMYAKCGSISEA 468
Query: 264 TKI 266
+I
Sbjct: 469 RRI 471
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D ++ SAL +Y +D + VF + + WN+++ GL+ EA+ F RM+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203
Query: 135 YE-NVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHY-GCMVDLLSKA 191
+ +V P+ T SVL A V GR + CG + E EH ++ L SK
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLA---EHEHVLTGLISLYSKC 260
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTL 249
G +E A L + +P+ V + AL+ G ++ + + ELM L PN+S L
Sbjct: 261 GDVESARCLFDMME-KPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVAL 319
Query: 250 L 250
+
Sbjct: 320 I 320
>gi|359475492|ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 532
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 214/335 (63%), Gaps = 8/335 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
R ++ W +I+ Y QN EAL F M ++ + P+ VTM +VLSACA +G LDLG+
Sbjct: 114 RSVLPWNVIISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLGKW 173
Query: 63 IHLYVMQIG----FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
IH YV G + + ++ +AL+DMY+KCG+L ++ VF ++ K++ +N++I GLA
Sbjct: 174 IHGYVKSEGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAMIMGLA 233
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++G EAL +F +M ++ PN TF+ VL AC+H+GL++ GR+ FL M +S+ PE+
Sbjct: 234 INGEGEEALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTGRQMFLDMIPHFSVPPEL 293
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY C VDLL++ GLLE+A E++ S F PN +WGALL GC+LH LE+A +L+
Sbjct: 294 EHYACYVDLLARVGLLEEAFEVVASMPFVPNNFVWGALLQGCRLHSRLELAQDVSQKLVK 353
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
++P NS + N A +W EV+ +R M+E G+ K PG SWI + R V++F A
Sbjct: 354 VDPENSAGYVMFSNALASDQQWGEVSGLRWLMREKGVRKH-PGCSWISVNRVVHEFLAGS 412
Query: 299 KSHPASDEIYSSLSKLDEQLKL-ASY-VPELEAML 331
SHP D IY +L+ L +++K+ ASY +L+A+L
Sbjct: 413 LSHPQIDSIYHTLNGLVKEMKVFASYHNTQLDALL 447
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 17/236 (7%)
Query: 1 MPARDIIS-WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP R ++ WT++I +Q+ Q E L F M + P+ T+ +VLSAC+ L A+++
Sbjct: 1 MPDRAMVRCWTSLIAGSAQSGQTEEVLRLFFMMVKENLRPENDTIVSVLSACSKLEAVEI 60
Query: 60 GREIHLYVMQIGFDIDVYIG-----SALVDMYAKCGSLDRSLLVF---FKLREKNLFCWN 111
+ + + I D G + L +Y K G +++ F + ++++ WN
Sbjct: 61 EKWVMILSEFINDDDTGSFGRDSVNTVLAYLYGKWGKVEKCKERFDEIVGIGKRSVLPWN 120
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGR---RRFLS 167
II +G + EAL++F MI + N+ PN VT +SVLSAC G ++ G+ S
Sbjct: 121 VIISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLGKWIHGYVKS 180
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLL---EDALE-LIRSSKFQPNAVIWGALLGG 219
C + ++D+ SK G L +D E ++ NA+I G + G
Sbjct: 181 EGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAMIMGLAING 236
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++D++S+ MI + N + EAL F++M+ + P+ T VL AC+H G LD G
Sbjct: 217 MVSKDVVSFNAMIMGLAINGEGEEALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTG 276
Query: 61 REIHLYVM---QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
R++ L ++ + +++ Y + VD+ A+ G L+ + V + N F W ++++G
Sbjct: 277 RQMFLDMIPHFSVPPELEHY--ACYVDLLARVGLLEEAFEVVASMPFVPNNFVWGALLQG 334
Query: 117 LAVH 120
+H
Sbjct: 335 CRLH 338
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 207/324 (63%), Gaps = 8/324 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEM-------KNSGISPDQVTMATVLSACAHLGALDLGR 61
W MI ++ + +F +L+ +++M NSG+ P++V++ +VL AC +LGAL G
Sbjct: 545 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGE 604
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H YV+Q GF+ D+ + +A++DMY+KCGSLD + +F + K+L CW+++I +HG
Sbjct: 605 WFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHG 664
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+A+ +FD+M+ V P+ VTF VLSAC+H+GL+EEG+ F MT + I ++ +Y
Sbjct: 665 HGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNY 724
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVDLL +AG L +A++LI + +P+A IWG+LLG C++H NL++A + L L+P
Sbjct: 725 ACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDP 784
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
++GY LL N+YA SRW EV K+R M G K G S +E + +V++F D+SH
Sbjct: 785 VHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANK-IQGFSLVEYDNQVHKFGVGDRSH 843
Query: 302 PASDEIYSSLSKLDEQLKLASYVP 325
P +++Y+ L +L +K YVP
Sbjct: 844 PQWEKLYAKLEELAAPMKHLGYVP 867
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 84/131 (64%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +++ Y+QN +++ F M + GI PD V + +L+A + LG +
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCL 360
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ GF+ +V++G++L+++Y+KCGSL ++ +F + +++ W+S+I +HG
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRG 420
Query: 124 HEALAMFDRMI 134
EAL +FD+MI
Sbjct: 421 GEALEIFDQMI 431
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 15/234 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLG 60
P ++ W + + Y + KQ+ E L F+ M +G +PD T+ L ACA L L+LG
Sbjct: 63 PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 61 REIHLYVM---QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+ IH + +IG D+ ++GSALV++Y+KCG + +L VF + + + W S++ G
Sbjct: 123 KVIHGFAKKNDEIGSDM--FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGY 180
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFI-SVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
+ EALA+F +M+ + + + S+L+ G + F M
Sbjct: 181 QQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-----EK 235
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLE 227
+V + M+ + +AL L +F+PN+V + L C + RNLE
Sbjct: 236 DVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLE 289
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 49/229 (21%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ISW+TMI CY+ N+ EAL+ F+EM P+ VT+ + L ACA L+ G
Sbjct: 232 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 291
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH I V+ K++ W +++ G A +
Sbjct: 292 KKIH--------KIAVW---------------------------KDVVSWVALLSGYAQN 316
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC--GYSI---- 174
G A++++ +F M+ + ++P+ V + +L+A + G+ ++ C GY +
Sbjct: 317 GMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA-------LCLHGYVVRSGF 369
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V +++L SK G L DA++L + + + VIW +++ +H
Sbjct: 370 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIH 417
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 42/210 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D + WT+M+T Y QN EAL F++M
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQM-------------------------------- 196
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
VM FD D+ + ++L+++YAK G + +F K+ EK++ W+++I A + A+
Sbjct: 197 --VMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 254
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F MI + EPN VT +S L AC + +EEG++ ++ +V + +
Sbjct: 255 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK-----IHKIAVWKDVVSWVAL 309
Query: 185 VDLLSKAGLLEDALELIR---SSKFQPNAV 211
+ ++ G+ ++ + R S QP+AV
Sbjct: 310 LSGYAQNGMAYKSMGVFRNMLSDGIQPDAV 339
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D++ W+ MI Y + R+A+D F++M +G+ P VT VLSAC+H G L+ G+
Sbjct: 647 GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK- 705
Query: 63 IHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
++ +M F I + + +VD+ + G L ++ + + E + W S++ +
Sbjct: 706 MYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRI 765
Query: 120 H 120
H
Sbjct: 766 H 766
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 4/199 (2%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H V + G D + + L +YAKC SL + VF + N+ WNS +
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 122 FAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E L +F MI E P+ T L AC ++E G+ I ++
Sbjct: 82 QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+V+L SK G + +AL++ + +P+ V+W +++ G + + + E A +++++++
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMD 200
Query: 241 --PNNSGYCTLLLNMYAEV 257
+ LLN+YA+
Sbjct: 201 CFDGDLPLVNSLLNLYAKT 219
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 46/267 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISP-------DQVTMATVLSAC 51
M RD++ W++MI Y + + EAL+ F++M GI+ QV +++C
Sbjct: 399 MIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSC 458
Query: 52 ----------------AHLGALDLGREIH-LYVMQ-----------IGFDIDVYIGSALV 83
AH L EI Y Q G D I +
Sbjct: 459 TLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFA 518
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE---- 139
MY +D + +VF + F WN +I G A G +L ++ +M+ + ++
Sbjct: 519 IMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNS 578
Query: 140 ---PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196
PN V+ +SVL AC + G + +G F S ++ ++D+ SK G L+
Sbjct: 579 GVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 637
Query: 197 ALELIRSSKFQPNAVIWGALLGGCKLH 223
A L + + + V W A++ +H
Sbjct: 638 ARCLFDETAGK-DLVCWSAMIASYGIH 663
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 210/331 (63%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+ + W TMI+ Q F +A++ F EM+ GI D+VTM + SAC +LGA +L
Sbjct: 425 IPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA 484
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + G D+ + +ALVDM+A+CG ++ VF K+ E+++ W + I +A+
Sbjct: 485 KWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAME 544
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +F++M+ + V+P+ V F+ VL+AC+H G VE+G F S+ + I+P++EH
Sbjct: 545 GNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEH 603
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLL +A +LI+S +PN V+WG+LL C++H+N+E+A A + L
Sbjct: 604 YGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELA 663
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +G LL N+YA +W +V ++R+ ++E G+ K PGSS +++ +++F + D+S
Sbjct: 664 PQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRK-VPGSSSVQVNGVIHEFTSGDES 722
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I L +++ + A ++P+L +L
Sbjct: 723 HPEMTHIALMLQEMNCRFSDAGHIPDLSNVL 753
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 134/243 (55%), Gaps = 16/243 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT++I Y++ + +EA+ F EM +GI P VTM V+SACA L LD+G
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG 251
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y+ ++G ++ + +ALVDMY KCG++D + +F + ++NL +N+I+ A
Sbjct: 252 ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 311
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITPEVE 179
G A EALA+ D M+ + P+ VT +S +SA A LV+ F C GY I +E
Sbjct: 312 GLAREALAILDEMLQQGPRPDRVTMLSAISA--SAQLVD----LFYGKVCHGYVIRNGLE 365
Query: 180 HY----GCMVDLLSKAGLLEDALEL--IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ ++D+ K G E A + + S+K V W +L G + ++E A
Sbjct: 366 GWDSIGNVIIDMYMKCGKPEMACRVFDLMSNK---TVVSWNSLTAGFIRNGDVESAWEVF 422
Query: 234 NEL 236
N++
Sbjct: 423 NQI 425
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
++I YS REA+ + M G++P+ T VLS C + A G ++H V++
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+G + DV+I + L+ YA+CG +D VF + E+N+ W S+I G A EA+++
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMV 185
F M+ + P+ VT + V+SAC ++ G R C Y + +V
Sbjct: 220 FFEMVEAGIRPSSVTMVCVISACAKLRDLDMGER-----VCAYIGELGLKLNKVMVNALV 274
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
D+ K G + DA + + N V++ +L
Sbjct: 275 DMYMKCGAI-DAAKRLFDECVDRNLVLYNTIL 305
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 39/269 (14%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+++ + T+++ Y++ REAL +EM G PD+VTM + +SA A L L G+
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVC 355
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ G + IG+ ++DMY KCG + + VF + K + WNS+ G +G
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDV 415
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM--------------- 168
A +F+++ E N V + +++S L E+ F M
Sbjct: 416 ESAWEVFNQI----PERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGI 471
Query: 169 --TCGYSITPE--------VEHYG---------CMVDLLSKAGLLEDALELIRSSKFQPN 209
CGY PE +E G +VD+ ++ G + A+++ + + +
Sbjct: 472 ASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVF-NKMTERD 530
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMI 238
W A +G + N E A N+++I
Sbjct: 531 VSAWTAAIGTMAMEGNGEGATGLFNQMLI 559
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS---LDRSLLVFFKLRE 104
L C L L +++H + + G D + LV+ A+ S LD + F +E
Sbjct: 32 LRCCKTLNQL---KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88
Query: 105 K-----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
LF NS+I G + G EA+ ++ RM+ V PN TF VLS CT
Sbjct: 89 DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
EG + S+ + +V C++ ++ G ++ ++ + N V W +L+ G
Sbjct: 149 EGIQVHGSVV-KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS-ERNVVSWTSLICG 206
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 213/327 (65%), Gaps = 6/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+++W MI + +A D +EM K + PD+VTM +++ ACA LG L+ G+
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234
Query: 63 IHLYVMQIG-FDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H Y ++ F+I D+ + +ALVDMYAKCGS+D +L VF ++R +N+F WN++I GLA+
Sbjct: 235 LHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 294
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+++FD+M ++ + P+ VTFI++L AC+HAGLV+EG F +M + I P +E
Sbjct: 295 HGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 354
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC+VDLL +A ++DAL I + + N+V+W LLG C+ + ++A ++ L
Sbjct: 355 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIEL 414
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP++ G +L N+YA VS+W K+R MK GIEK PG SWIE+ ++QF A D+
Sbjct: 415 EPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKT-PGCSWIELNGMIHQFVAGDR 473
Query: 300 SHPASDEIYSSLSKLDEQLKL-ASYVP 325
SH +++IY+ + ++ ++ L +VP
Sbjct: 474 SHLQTEQIYAMIEEMTRRVNLDGGHVP 500
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 18/239 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D TMI Y++++ EA+ + M G+ D T VL+ACA LGA+ LG
Sbjct: 71 MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLG 130
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H V++ GF D+++ +AL+ Y CGS + VF + +++ WN +I
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190
Query: 121 GFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G + +A + D M +N+ P+ VT +S++ AC G +E G +FL +S + E++
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG--KFL-----HSYSKELD 243
Query: 180 HY---------GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ +VD+ +K G ++ AL++ R + + N W AL+GG +H + E A
Sbjct: 244 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGEDA 301
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +W +I + + +A+ F++M++ + PD VT +L AC+H G +D G
Sbjct: 277 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEG 336
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSL 96
+ M+ F I+ + +VD+ + +D +L
Sbjct: 337 LAM-FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 373
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 44/259 (16%)
Query: 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFC 109
H ++ ++ H +++ + S L+ A G L+ + +F +++ + F
Sbjct: 19 THCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFI 78
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFL 166
N++I G A +EA++++ M+ V + T+ VL+AC G V+ GRR L
Sbjct: 79 CNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVL 138
Query: 167 SMTCG---YSITPEVEHY------GCMVDLLSKA------------------GLLEDALE 199
G + I ++ Y GC D+ ++ GL E A +
Sbjct: 139 KNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFD 198
Query: 200 LI----RSSKFQPNAVIWGALLGGCKLHRNLE---IAHIAVNELMILEPNNSGYCTLLLN 252
L+ + +P+ V +L+ C NLE H EL E N C L+L
Sbjct: 199 LLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEIN----CDLVLE 254
Query: 253 MYAEVSRWAEVTKIRVAMK 271
A V +A+ I +A++
Sbjct: 255 T-ALVDMYAKCGSIDLALQ 272
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 207/331 (62%), Gaps = 4/331 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W +MI +N++F EAL F EM NS + PD T A+V++ CA LG+
Sbjct: 153 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 212
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++ ++ + SAL+D+Y+KCG ++ + VF ++ ++ WNS+I GLA+H
Sbjct: 213 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 272
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M E+V P+ +TFI +L+AC+H GLVE+GRR F M YSI P++EH
Sbjct: 273 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 332
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AGL+E+A +I++ +P+ VIW ALL C+ +N E+ +A+ ++ L
Sbjct: 333 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL- 391
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL NMY + +W ++R MK G+ K G SW+E+ ++QF A D+S
Sbjct: 392 --NSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKN-RGRSWVELGGVIHQFKAGDRS 448
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY L L + KL ++P + +L
Sbjct: 449 HPETGAIYKVLEGLIRRTKLEGFMPATDLVL 479
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYI 78
+ FR A + ++ G + +++S AH LDL ++ + GFD+
Sbjct: 72 SSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDL--IT 129
Query: 79 GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV 138
+ ++ K G D + VF K+ +++ WNS+I G + EAL F M+ NV
Sbjct: 130 ANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNV 189
Query: 139 EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE----HYGCMVDLLSKAGLL 194
EP+G TF SV++ C G + G I +++ ++DL SK G +
Sbjct: 190 EPDGFTFASVINGCARLGSSHHA-----ELVHGLMIEKKIQLNFILSSALIDLYSKCGRI 244
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
A ++ S + + +W +++ G +H L + I V M +E
Sbjct: 245 NTAKKVFNSIQ-HDDVSVWNSMINGLAIH-GLALDAIGVFSQMEME 288
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 207/331 (62%), Gaps = 4/331 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W +MI +N++F EAL F EM NS + PD T A+V++ CA LG+
Sbjct: 114 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 173
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++ ++ + SAL+D+Y+KCG ++ + VF ++ ++ WNS+I GLA+H
Sbjct: 174 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 233
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M E+V P+ +TFI +L+AC+H GLVE+GRR F M YSI P++EH
Sbjct: 234 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 293
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AGL+E+A +I++ +P+ VIW ALL C+ +N E+ +A+ ++ L
Sbjct: 294 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHL- 352
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
NSG LL NMY + +W ++R MK G+ K G SW+E+ ++QF A D+S
Sbjct: 353 --NSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKN-RGRSWVELGGVIHQFKAGDRS 409
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + IY L L + KL ++P + +L
Sbjct: 410 HPETGAIYKVLEGLIRRTKLEGFMPATDLVL 440
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYI 78
+ FR A + ++ G + +++S AH LDL ++ + GFD+
Sbjct: 33 SSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDL--IT 90
Query: 79 GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV 138
+ ++ K G D + VF K+ +++ WNS+I G + EAL F M+ NV
Sbjct: 91 ANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNV 150
Query: 139 EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE----HYGCMVDLLSKAGLL 194
EP+G TF SV++ C G + G I +++ ++DL SK G +
Sbjct: 151 EPDGFTFASVINGCARLGSSHHA-----ELVHGLMIEKKIQLNFILSSALIDLYSKCGRI 205
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
A ++ S + + +W +++ G +H L + I V M +E
Sbjct: 206 NTAKKVFNSIQ-HDDVSVWNSMINGLAIH-GLALDAIGVFSQMEME 249
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 212/328 (64%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + WT MI + +N++ AL+AF M+ + P++ T+ VLSAC+ LGAL++GR +
Sbjct: 241 KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 300
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + ++++++G+AL++MY++CGS+D + VF +++++++ +N++I GL+++G +
Sbjct: 301 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 360
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F M+ + P VTF+ VL+AC+H GLV+ G F SM Y + P++EHYGC
Sbjct: 361 RQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGC 420
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL + G LE+A +LIR+ K P+ ++ G LL CK+H+NLE+ EL +
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD 480
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL ++YA +W E ++R MKE G++K PG S IE+ ++++F D HP
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE-PGCSSIEVNNEIHEFLLGDLRHPQ 539
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ IY L +L+ L+L Y PE E +L
Sbjct: 540 KERIYEKLEELNRLLRLEGYHPEKEVVL 567
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 69/334 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +T +I + + + EA+ ++ M + I PD MA++L AC AL GRE+H
Sbjct: 111 NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVH 170
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------DRSLL-- 97
+++GF + + ++++Y KCG L D+ L+
Sbjct: 171 SRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEE 230
Query: 98 ---VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
VF ++R K+ CW ++I+G + + AL F M ENV PN T + VLSAC+
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290
Query: 155 AGLVEEGR------RRF---LSMTCGYSI---------------------TPEVEHYGCM 184
G +E GR R+F L++ G ++ +V Y M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350
Query: 185 VDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCK----LHRNLEIAHIAVNELM 237
+ LS G A+EL R + +P V + +L C + EI H +
Sbjct: 351 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 410
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271
+ EP Y ++++ V R E + MK
Sbjct: 411 V-EPQIEHY-GCMVDLLGRVGRLEEAYDLIRTMK 442
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I++ TMI+ S N + R+A++ F M + P VT VL+AC+H G +D G
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRS 95
EI + M + ++ I +VD+ + G L+ +
Sbjct: 399 FEI-FHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEA 434
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 6/169 (3%)
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89
N S S DQ + ++L H+ + IH +++ G D ++ L+ +KC
Sbjct: 38 NSNPKSLKSLDQKQIISLLQRSRHINQV---LPIHAQLIRNGHSQDPFMVFELLRSCSKC 94
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++D + +F N++ + ++I+G G EA+ ++ RM++E++ P+ S+L
Sbjct: 95 HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 154
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
AC + EGR ++ G+S V +++L K G L DA
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLR--IMELYGKCGELGDA 201
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 208/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALD 58
+P +D+++W +I+C ++NK+ R+AL F M++ PD+VT +L ACA L AL+
Sbjct: 188 VPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALE 247
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G IH Y+ Q G++ + + ++L+ MY++CG +D++ VF K+ EKN+ W+++I GL+
Sbjct: 248 FGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLS 307
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++G EA+ F M VEP TF +VLSAC+H GLV+EG F M + I P V
Sbjct: 308 MNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNV 367
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
HYGC+VDLL +AG+L+ A ELI S + +P+A +W LLG C++H + + V L+
Sbjct: 368 HHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIE 427
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+ +G LLLN+Y+ W +VT++R MKE GI P + IE+ V+QFA D
Sbjct: 428 LKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYT-TPCCTTIELNGVVHQFAVDD 486
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP D+IY L ++++QLK+A Y E+ + L
Sbjct: 487 ISHPMKDKIYKQLDEINKQLKIAGYEAEMSSEL 519
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 101/213 (47%), Gaps = 4/213 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ M+ YS ++ E L + +M+ G+ D ++ + + +C L +L G +IH +
Sbjct: 95 YNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIF 154
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
G D + ++++D+Y+ CG + + +F ++ +K++ WN +I L + +AL
Sbjct: 155 INGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALG 214
Query: 129 MFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+F+ M +P+ VT + +L AC +E G R + E ++
Sbjct: 215 LFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFG-ERIHGYIQQHGYNTESNLCNSLIS 273
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ S+ G ++ A E+ + N V W A++ G
Sbjct: 274 MYSRCGRMDKAYEVF-DKMTEKNVVSWSAMISG 305
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 207/307 (67%), Gaps = 1/307 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + I SWT +++ Y++ + +AL+ F M+ GI PD++++ +VL CA LGAL+LG
Sbjct: 209 MQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH+Y + GF ++ + +AL++MYAKCGS+D+ +F +++E+++ W+++I GLA H
Sbjct: 269 KWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANH 328
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA+ +F M +EP+ +TF+ +L+AC HAGL+ EG R F SM Y+I P VEH
Sbjct: 329 GRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEH 388
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+V+LL +G L+ ALEL++ +P++ IWG+LL C+ H NL+IA IA+ L+ LE
Sbjct: 389 YGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELE 448
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G LL N+YA++ +W V+++R M+ + K+ PG S IE++ V +FA+ D S
Sbjct: 449 PADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM-KKTPGCSSIEVDNMVQEFASGDDS 507
Query: 301 HPASDEI 307
P S I
Sbjct: 508 KPFSKAI 514
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 36/190 (18%)
Query: 9 WTTMITCYSQNKQFREALDAFNEM-----KNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ MI Y NK + A+ + +M + I PD+ T V+ +CA L DLG+++
Sbjct: 80 YNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 139
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLD------------------------------ 93
H +V + G + + ++LV+MY KC SLD
Sbjct: 140 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQM 199
Query: 94 -RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
R+ +F ++++K +F W +I+ G A G +AL F RM +EP+ ++ +SVL C
Sbjct: 200 RRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDC 259
Query: 153 THAGLVEEGR 162
G +E G+
Sbjct: 260 AQLGALELGK 269
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 207/331 (62%), Gaps = 9/331 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++ ++I ++ N + EAL F EM G+ PD T+ ++LSA A LGAL+LG
Sbjct: 191 MRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELG 250
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H+Y++++G + ++ ++L+D+YAKC ++ E+N W S+I GLAV+
Sbjct: 251 RRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIVGLAVN 302
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EAL +F M + + P+ +TF+ VL AC+H G+++EG F M + I P +EH
Sbjct: 303 GFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEH 362
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGL++ A E I++ QPNAV W LLG C +H +L + A + L+ LE
Sbjct: 363 YGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLE 422
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +SG LL N+Y RWA+V IR +M + G+ K+ G S +E+ +VY+F ++S
Sbjct: 423 PKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGV-KKTSGYSLVELGNRVYEFTMGNRS 481
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S ++Y+ L K+ E LKL YVP +L
Sbjct: 482 HPQSQDVYALLEKITELLKLEGYVPHTANVL 512
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 88/159 (55%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +W TM Y+++ AL + +M S I PD T +L A + + G IH
Sbjct: 94 NVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIH 153
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF+ V++ ++L+ +YA CG + + VF +R+++L S+I G A++G
Sbjct: 154 SVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPS 213
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
EAL +F M E VEP+G T +S+LSA G +E GRR
Sbjct: 214 EALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRR 252
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF + N+F WN++ G A AL + +MI +EP+ T+ +L A + +
Sbjct: 86 VFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLN 145
Query: 158 VEEG 161
V EG
Sbjct: 146 VREG 149
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 210/328 (64%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +++W++M Y QN+ + +AL F + +G+ DQ M++V+ ACA L A+ G
Sbjct: 226 MPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEG 285
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++++ + + GF ++++ S+L+DMYAKCG ++ S VF + ++N+ WN++I GL+ H
Sbjct: 286 KQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRH 345
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ E + +F++M + PN VTF+SVLSAC H GLV +G++ F MT + + P V H
Sbjct: 346 ARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFH 405
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD LS+AG + +A +LI F +A +WG+LL C+ H NLE+A +A +L +E
Sbjct: 406 YSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIE 465
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NSG LL NMYA +W EV K+R +KE ++K G SWIE++ KV+ F +++
Sbjct: 466 PHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKE-RGKSWIEIKDKVHLFMVGERN 524
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP EIYS L+++ ++L+ Y E +
Sbjct: 525 HPKIVEIYSKLNEVMDELQKLGYKVETQ 552
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 139/253 (54%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R ++SW TMI +QN + EALD +M+ G + T+++VL ACA AL
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + ++ D++V++ +AL+D+YAKCG + ++ VF + ++++ W+S+ G +
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEVE 179
+ALA+F + ++ + SV+ AC A ++E + L G+ V
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVA 304
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVN-ELM 237
++D+ +K G +E++ ++ R + + N V+W A++ G H R+LE+ + + M
Sbjct: 305 --SSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQM 361
Query: 238 ILEPNNSGYCTLL 250
L PN+ + ++L
Sbjct: 362 GLSPNDVTFVSVL 374
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L CA L G+ H ++ +G D+ + L++MY+KCGS+D + VF ++ ++
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
L WN++I L +G +EAL + +M E + T SVL AC + E +
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC-QLLH 188
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ V ++D+ +K GL++DA+ + S + V W ++ G
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP-DRSVVTWSSMAAG 240
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 204/324 (62%), Gaps = 1/324 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT +I+ SQ R++L F +M+ G+ P+ ++ +L ACA L L G+EIH
Sbjct: 505 NVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIH 564
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF DV++ +AL+DMY+K SL + VF +++ K L WN +I G A+ G
Sbjct: 565 CLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGK 624
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+++F+ M V P+ +TF ++LSAC ++GL+ EG + F SM Y I P +EHY CM
Sbjct: 625 EAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCM 684
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL +AG L++A +LI + +P+A IWGALLG C++H+NL+ A A L LEPNNS
Sbjct: 685 VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNS 744
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
L++N+Y+ +RW ++ +R M G+ R SWI++ ++V+ F++ +K HP +
Sbjct: 745 ANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNR-QVWSWIQINQRVHVFSSDEKPHPDA 803
Query: 305 DEIYSSLSKLDEQLKLASYVPELE 328
+IY L +L ++K YVP++
Sbjct: 804 GKIYFELYQLVSEMKKLGYVPDVN 827
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 13/279 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI++W +++ + + E L+ M+ G P+ +M +VL A + LG L++G+E H
Sbjct: 334 DIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETH 393
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ GFD DVY+G++L+DMY K SL + VF ++ +N+F WNS++ G + G
Sbjct: 394 GYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 453
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+AL + ++M E ++P+ VT+ ++S G +E L T +TP V + +
Sbjct: 454 DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEA-LAVLHQTKSLGLTPNVVSWTAL 512
Query: 185 VDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCK----LHRNLEIAHIAVNELM 237
+ S+AG D+L+ ++ PN+ LL C L + EI +++
Sbjct: 513 ISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGF 572
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKI--RVAMKELG 274
I + T L++MY++ S K+ R+ K L
Sbjct: 573 I---EDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLA 608
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 1/195 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + + W I Q+++ ++ ++ F +M+ S + + T+ VL AC +GAL+
Sbjct: 194 MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAA 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH YV + G D DV + + L+ MY+K G L+ + VF + +N WNS+I A
Sbjct: 254 KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 313
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ++A ++F + +++P+ VT+ +LS G EE L G P
Sbjct: 314 GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE-VLNILQRMQGEGFKPNSSS 372
Query: 181 YGCMVDLLSKAGLLE 195
++ +S+ G L
Sbjct: 373 MTSVLQAISELGFLN 387
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 46/260 (17%)
Query: 4 RDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
R+ + W + + + S L+ F E+ G+ D + L C + + LG E
Sbjct: 95 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 154
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN-SIIEGLAVHG 121
IH +++ GFD+DVY+ AL++ Y +C L+++ VF ++ WN +II L
Sbjct: 155 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 214
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSAC----------------------------- 152
+ + +F +M + ++ T + VL AC
Sbjct: 215 L-QKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCN 273
Query: 153 ------THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRS 203
+ G +E RR F SM + M+ + G L DA L + S
Sbjct: 274 PLISMYSKNGKLELARRVFDSME-----NRNTSSWNSMISSYAALGFLNDAWSLFYELES 328
Query: 204 SKFQPNAVIWGALLGGCKLH 223
S +P+ V W LL G LH
Sbjct: 329 SDMKPDIVTWNCLLSGHFLH 348
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+I +W ++++ YS F +AL N+M+ GI PD VT ++S A G G
Sbjct: 431 MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC---G 487
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E + Q +SL + N+ W ++I G +
Sbjct: 488 KEALAVLHQT-----------------------KSLGL-----TPNVVSWTALISGSSQA 519
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G ++L F +M E V PN + +L AC L+++G+ LS+ G+ +V
Sbjct: 520 GNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGF--IEDVF 577
Query: 180 HYGCMVDLLSKAGLLEDALELIR 202
++D+ SK+ L++A ++ R
Sbjct: 578 VATALIDMYSKSSSLKNAHKVFR 600
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ + SW MI ++ +EA+ FNEM+ G+ PD +T +LSAC + G + G
Sbjct: 605 KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEG 661
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 197/325 (60%), Gaps = 1/325 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + +++W MI+ Y+QN A+ F EM + +P+ VT+ T+LSACA LG+L G+
Sbjct: 372 PEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGK 431
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H + + ++Y+ +ALVDMYAKCG++ + +F + EKN WN++I G +HG
Sbjct: 432 WVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHG 491
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+ HEAL +++ M++ P+ VTF+SVL AC+HAGLV EG F +M Y I P +EHY
Sbjct: 492 YGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHY 551
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVD+L ++G LE ALE I+ +P +WG LLG C +H++ +IA +A L L+P
Sbjct: 552 ACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDP 611
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+ GY LL N+Y+ + + IR +K+ + K PG + IE+ + F + D+SH
Sbjct: 612 GSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKS-PGCTLIEVNGTPHVFVSGDRSH 670
Query: 302 PASDEIYSSLSKLDEQLKLASYVPE 326
+ +IY+ L KL +++ Y E
Sbjct: 671 SHATDIYAKLEKLTGKMREMGYQAE 695
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 141/309 (45%), Gaps = 40/309 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD + W TMI +N F +++ F EM G+ D T+ VL A A L L +G
Sbjct: 169 MPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I ++IGF Y+ + L+ +Y+KCG ++ + L+F ++ +L +N++I G +
Sbjct: 229 MGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTAN 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLS----------ACT-HAGLVEEGRRRFLSMT 169
G ++ +F +++ + T + ++ AC+ H V+ G +++
Sbjct: 289 GGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVS 348
Query: 170 CGYSI-----------------TPE--VEHYGCMVDLLSKAGLLEDALELIR---SSKFQ 207
++ +PE V + M+ ++ G E A+ L + ++F
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408
Query: 208 PNAVIWGALLGGCKLHRNLE----IAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
PNAV +L C +L + H+ +E LEPN T L++MYA+ +E
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIKSE--NLEPNIY-VSTALVDMYAKCGNISEA 465
Query: 264 TKIRVAMKE 272
++ +M E
Sbjct: 466 WQLFDSMSE 474
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 3/251 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+I++ MI+ ++ N ++ F E+ SG T+ ++ + G L L IH
Sbjct: 274 DLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIH 333
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ G ++ + +A +Y K +D + +F + EK + WN++I G +G
Sbjct: 334 GFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTE 393
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
A+++F M+ PN VT ++LSAC G + G+ + ++ P + +
Sbjct: 394 TAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVH-HLIKSENLEPNIYVSTAL 452
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+ +K G + +A +L S + N V W ++ G LH A NE++ L N S
Sbjct: 453 VDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPS 511
Query: 245 GYCTLLLNMYA 255
T L +YA
Sbjct: 512 A-VTFLSVLYA 521
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 8/221 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
+P DI + ++ +S N ++ + ++ N+ +SPD T A ++AC++ L L
Sbjct: 70 VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML 129
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H + + G+ +V++GSALVD+Y K + + VF + E++ WN++I GL
Sbjct: 130 ---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVK 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+ +++ +F M+ + V + T +VL A ++ G + L++ G+ V
Sbjct: 187 NCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ L SK G + A L R +P+ + + A++ G
Sbjct: 247 --LTGLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISG 284
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ++W TMI Y + EAL +NEM + G +P VT +VL AC+H G + G
Sbjct: 472 MSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEG 531
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI H V + + + + +VD+ + G L+++L K+ E W +++
Sbjct: 532 EEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACM 591
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+H A +R+ ++P V + +LS
Sbjct: 592 IHKDTDIARLASERLF--ELDPGSVGYYVLLS 621
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 203/326 (62%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W +MI+ +SQN + A+D F +M SG D V++++ LSA A+L AL G
Sbjct: 476 MSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYG 535
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H YV++ F D ++ S L+DMY+KCG+L + VF + KN WNSII H
Sbjct: 536 KEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNH 595
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L ++ M+ + P+ VTF+ ++SAC HAGLV+EG F MT Y I +EH
Sbjct: 596 GCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEH 655
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL +AG + +A + I+S F P+A +WG LLG C+LH N+E+A +A L+ L+
Sbjct: 656 YACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELD 715
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL N++A+ WA V K+R MKE G++K PG SWI++ + F+A+D +
Sbjct: 716 PKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQK-IPGYSWIDVNGGTHMFSAADGN 774
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY L L +L+ YVP+
Sbjct: 775 HPESVEIYLILKSLLLELRKQGYVPQ 800
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 130/273 (47%), Gaps = 8/273 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD I W M+ Y ++ F A+ F EM+ S + VT +LS CA G G
Sbjct: 173 LPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAG 232
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V+ GF+ D + + LV MY+KCG+L + +F + + + WN +I G +
Sbjct: 233 TQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQN 292
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA +F+ MI V+P+ VTF S L + +G + + S + + +V
Sbjct: 293 GFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVH-SYIVRHRVPFDVYL 351
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ K G +E A ++ + + AV A++ G LH L I I +I E
Sbjct: 352 KSALIDVYFKGGDVEMARKIFQQNILVDVAVC-TAMISGYVLH-GLNIDAINTFRWLIQE 409
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273
G T L M + + A V ++ KEL
Sbjct: 410 ----GMVTNSLTMASVLPACAAVAALKPG-KEL 437
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 77/129 (59%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ T MI+ Y + +A++ F + G+ + +TMA+VL ACA + AL G+E+H
Sbjct: 379 DVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELH 438
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ + V +GSA+ DMYAKCG LD + F ++ +++ CWNS+I + +G
Sbjct: 439 CHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPE 498
Query: 125 EALAMFDRM 133
A+ +F +M
Sbjct: 499 IAIDLFRQM 507
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 4/217 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R + W MI F AL + +M S +SPD+ T V+ AC L + L +
Sbjct: 75 RYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVV 134
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +GF +D++ GSAL+ +YA G + + VF +L ++ WN ++ G G
Sbjct: 135 HDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDF 194
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
A+ F M N VT+ +LS C G G + L + G+ P+V +
Sbjct: 195 DNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVAN-- 252
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + SK G L A +L + Q + V W L+ G
Sbjct: 253 TLVAMYSKCGNLLYARKLFNTMP-QTDTVTWNGLIAG 288
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
+ ++ AC+ + R++H V+ G S ++ +Y CG + +FF+L
Sbjct: 14 LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ WN +I GL + G+ AL + +M+ NV P+ TF V+ AC
Sbjct: 74 LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 122
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 197/324 (60%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ARD +W+ MI Y QN+ EAL F EM GI P+ + ++L+ CA L D G
Sbjct: 293 MCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYG 352
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+H +++ FD DV+ SAL+ MY KCG+LD++ VF K++ WNS+I G A H
Sbjct: 353 RELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQH 412
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +FD + + P+G+T+I VL+AC++ G V+EGR F SM SI H
Sbjct: 413 GLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAH 472
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGL+++AL+LI + +P+A+IWGAL+G C++H+N EIA +A +L+ LE
Sbjct: 473 YSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELE 532
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK- 299
P ++G LL ++Y RW + + +R + + K PG SWIE + V+ F + D
Sbjct: 533 PGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNK-SPGCSWIEYNKMVHLFTSGDVL 591
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
SHP I + L +LD L + Y
Sbjct: 592 SHPEHAIILNMLEELDGLLMESGY 615
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ Y+QN + A F M + ++V+ +L G ++
Sbjct: 200 MPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLVGYIQAGHVEDA 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ D V +A++ + + G +D + +F ++ ++ W+++I+ +
Sbjct: 256 EDL----FNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQN 311
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
F EAL+ F M+ + PN +FIS+L+ C + GR +M C + +V
Sbjct: 312 EFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDT--DVF 369
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQP-NAVIWGALLGGCKLH 223
++ + K G L+ A + + F+P + V+W +++ G H
Sbjct: 370 AVSALITMYIKCGNLDKAKRVF--NMFEPKDVVMWNSMITGYAQH 412
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMA-------TVLSACAH 53
MP R S+ +I Y +N AL F+ M + + +A T+ A A
Sbjct: 43 MPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAA 102
Query: 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
L ++ L + + F ++L+ Y + G L ++ +F ++ E+N + +
Sbjct: 103 LASIPLPPSV------VSF-------TSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVL 149
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+ G G +EA +FD M ++V V ++LS AG + E R F M
Sbjct: 150 LGGFLDAGRVNEARKLFDEMPDKDV----VARTAMLSGYCQAGRITEARALFDEM 200
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 17/219 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL-DL 59
MP+RD+ S+ +I S + DA + + + P V+ ++L G L D
Sbjct: 74 MPSRDLGSYNALIAGLSLRRHTLP--DAAAALASIPLPPSVVSFTSLLRGYVRHGLLADA 131
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R H + V +G L G ++ + +F ++ +K++ +++ G
Sbjct: 132 IRLFHQMPERNHVTYTVLLGGFL-----DAGRVNEARKLFDEMPDKDVVARTAMLSGYCQ 186
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EA A+FD M NV V++ +++S G V R+ F M ++
Sbjct: 187 AGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKLFEVMPDRNEVS---- 238
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
+ M+ +AG +EDA +L + P A ++G
Sbjct: 239 -WTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVG 276
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 206/331 (62%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D + W ++I ++Q+ EAL + M+ G DQ T+ +VL AC L L+LG
Sbjct: 444 MMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG 503
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ H++V++ FD D+ + +AL+DMY KCGSL+ + +F ++ +K++ W+++I GLA +
Sbjct: 504 RQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQN 561
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ EAL +F+ M + +PN +T + VL AC+HAGLV EG F SM Y I P EH
Sbjct: 562 GFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREH 621
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +A L+D ++LI +P+ V W LL C+ +N+++A A E++ L+
Sbjct: 622 YGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLD 681
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G LL N+YA RW +V ++R MK+ GI K PG SWIE+ ++++ F DKS
Sbjct: 682 PQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKE-PGCSWIEVNKQIHAFILGDKS 740
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP DEI L++ +L A YVP+ +L
Sbjct: 741 HPQIDEINRQLNQFICRLAGAGYVPDTNFVL 771
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI+ YS + A+ M G+ P+ T ++VL AC L L
Sbjct: 346 MPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL--- 402
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++M++G + DV++ SAL+D+Y+K G L +L VF ++ + WNSII A H
Sbjct: 403 KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQH 462
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL ++ M + T SVL ACT L+E GR+ + + ++
Sbjct: 463 SDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVL---KFDQDLIL 519
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K G LEDA + I + + + + W ++ G
Sbjct: 520 NNALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIAG 557
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 15 CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI 74
CY ++ A+ + M+ G+ D +T + ++ C GA+ G+ +H ++ G+
Sbjct: 261 CYRRD--LPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHP 318
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
++ + L++MY K L+ + ++F K+ E+N+ W ++I + A+ + M
Sbjct: 319 KTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMF 378
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
+ V PN TF SVL AC L + + M G + +V ++D+ SK G L
Sbjct: 379 RDGVMPNMFTFSSVLRACER--LYDLKQLHSWIMKVG--LESDVFVRSALIDVYSKMGEL 434
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRN 225
+AL++ R ++V+W +++ H +
Sbjct: 435 LEALKVFR-EMMTGDSVVWNSIIAAFAQHSD 464
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ISW M+ Y+ N+ +A++ F M+ + PD +T+ATVL C L A +G
Sbjct: 253 MQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVG 312
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + + ++ + +AL+DMYA CG L + +F + +++ W SII H
Sbjct: 313 KRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKH 372
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F++M+ + +EP+ + F++VL+AC+HAGL+ +G+ F SMT Y I P+ EH
Sbjct: 373 GHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEH 432
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG + +A + I + +PN +WGALL C++H N++I +A + L L
Sbjct: 433 YTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLV 492
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +GY LL NMYA RWA+VT +R M GI K+ PG+S +E+ +V+ F D+
Sbjct: 493 PEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGI-KKFPGTSIVELGDQVHTFHIGDRC 551
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S+ IY L +L +++ Y PE+EA L
Sbjct: 552 HPQSEMIYHKLDELLGKIRGMGYNPEVEATL 582
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 9/220 (4%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGIS--PDQVTMATVLSACAHLGALDLGREIH 64
+ + +I + + R+AL F M+ G + PD T L +C+ L LG +IH
Sbjct: 87 VCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIH 146
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V ++ D +VY+ + + MY++CG + + VF + +++ WN++I G A G
Sbjct: 147 SAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFD 206
Query: 125 EALAMFDR-MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F + ++ + P+ T +L A G + RF+ E+ +
Sbjct: 207 RAIEVFKQFVVLQGSMPDAGTMAGILPA---MGNAKPDDIRFVRRVFDNMQFKELISWNA 263
Query: 184 MVDLLSKAGLLEDALE---LIRSSKFQPNAVIWGALLGGC 220
M+ + + A+E L+ + +P+++ +L C
Sbjct: 264 MLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPC 303
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP RD++SW MI +++ F A++ F + G PD TMA +L A +
Sbjct: 184 MPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGN------ 237
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
AK + VF ++ K L WN+++ A
Sbjct: 238 ---------------------------AKPDDIRFVRRVFDNMQFKELISWNAMLAVYAN 270
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ F +A+ +F M + VEP+ +T +VL C G +R + ++ P +
Sbjct: 271 NEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVG-KRIHEIIKRKNMCPNLL 329
Query: 180 HYGCMVDLLSKAGLLEDALEL 200
++D+ + G L+DA E+
Sbjct: 330 LENALMDMYASCGCLKDAREI 350
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 204/326 (62%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW+ MI YSQ Q EA+ F M G+ P + +VLSACA LG LDLG
Sbjct: 335 MPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLG 394
Query: 61 REIH-LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R I+ YV+ + V +G+A +D+YAKCG D + +F ++ E+N+ WNS+I AV
Sbjct: 395 RWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAV 454
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + E L +F+++ + P+ +TF+ +LSAC+H+GLV EGRR F M Y I P+ E
Sbjct: 455 HGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSE 514
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CM+DLL K GLLE+A E+ + + + WGALL C+++ N+EI A ++L+ L
Sbjct: 515 HYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQL 574
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P +SG L+ +YA ++W +V +RV M+E G++K PG S IE++ K ++F +D
Sbjct: 575 NPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKN-PGCSSIEVDGKFHEFLVADV 633
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
SH S++IY++L + LK YVP
Sbjct: 634 SHVHSEDIYAALKNIYFHLKWEGYVP 659
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 136/319 (42%), Gaps = 49/319 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP RD++SWTT++ Y++ EA F M G+ P++VT+ V+SA +G L
Sbjct: 202 MPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAF 261
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDM-------------------------------YAK 88
GR ++ YV G V + +AL+DM YAK
Sbjct: 262 GRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAK 321
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
CG L+ + +F + +N W+ +I + EA+ +F MI E VEP +SV
Sbjct: 322 CGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSV 381
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
LSAC G ++ GR + + V +D+ +K G + A +L + +
Sbjct: 382 LSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLF-AEMAER 440
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTL-----LLNMYAEVSRWAEV 263
N V W +++ +H E E++ L G C + L + + S V
Sbjct: 441 NVVSWNSMIMAHAVHGQSE-------EVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLV 493
Query: 264 TKIRVAMKEL----GIEKR 278
++ R KE+ GIE +
Sbjct: 494 SEGRRYFKEMKLIYGIEPK 512
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 7/219 (3%)
Query: 60 GREIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G +H ++ G V +G+ALV YA SL + +F ++ ++++ W ++++G A
Sbjct: 159 GEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYA 218
Query: 119 VHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
G A EA +F RM+ ++PN VT ++V+SA GL+ GR + + G +
Sbjct: 219 RRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADG-GVGRS 277
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V ++D+ K G A E+ S + + W ++ +LE A ++
Sbjct: 278 VNLENALIDMFGKFGCAASAREVFDSMAVK-DVYSWTTMVNAYAKCGDLESAARLFDD-- 334
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ N+ + ++ Y++ ++ E ++ AM E G+E
Sbjct: 335 -MPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVE 372
>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Brachypodium distachyon]
Length = 851
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 200/322 (62%), Gaps = 1/322 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT++I+ N ++ ++ + F EM+ G+ P VTM +L ACA L L G+E+H
Sbjct: 442 NVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELH 501
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ ++ +D D+ +G+AL+DMY+K GSL + +F +++ KNL C N+++ GLAVHG +H
Sbjct: 502 CFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSH 561
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+ +F + ++P+ +TF ++L+AC GL+ EG F +M Y + P E+Y CM
Sbjct: 562 EAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACM 621
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL+++G L++A+ LI S P A +WGALL GC +H NL++A +A L LEP NS
Sbjct: 622 VDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNS 681
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
+++++Y + E ++ AMK G+ R PG SWI++E+ ++ F HP +
Sbjct: 682 ANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTR-PGWSWIQIEQGIHVFEVDGSPHPET 740
Query: 305 DEIYSSLSKLDEQLKLASYVPE 326
EI L L Q+K+ YVP+
Sbjct: 741 AEICEELMSLVRQIKMTGYVPD 762
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 4/222 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + +W +++ +++ + REAL M G+ PD T++++L + A+ G + G
Sbjct: 268 PEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGM 327
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E+H + ++ G D Y G+ALVDMYAKCG LD + VF L +NL WNS++ G A G
Sbjct: 328 EVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAG 387
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
AL + +RM ++PN T+ +++ + GL + L +TP V +
Sbjct: 388 QFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQA-MLLLRQIKAAGLTPNVVSW 446
Query: 182 GCMVDLLSKAGLLEDALELIRSSK---FQPNAVIWGALLGGC 220
++ G ED+ + + QP+ V LL C
Sbjct: 447 TSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRAC 488
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 45/257 (17%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D + W + ++ ++ EA+ AF EM+ G++ D +A VL AC A G+
Sbjct: 131 GKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKA 190
Query: 63 IHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLR------------------ 103
+H + ++ G D + L MYA+ + + V +
Sbjct: 191 VHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRL 250
Query: 104 ------------------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
E L WN+++ G A HG EALA+ RM+ + + P+ T
Sbjct: 251 GLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTV 310
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTC---GYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
S+L + +AG+V G + + C + + P+ +VD+ +K G L+ A +
Sbjct: 311 SSLLKSVANAGMVRHG----MEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFD 366
Query: 203 SSKFQPNAVIWGALLGG 219
+ + + N W +L+ G
Sbjct: 367 TLEHR-NLATWNSLVAG 382
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ M+T + + Q EA+ F+++ SG+ PD +T +L+AC +G + G E
Sbjct: 542 KNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWE- 600
Query: 64 HLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSIIEGLA 118
+ M+ + + + Y + +VD+ A+ G LD ++ L+ + W +++ G +
Sbjct: 601 YFDNMETKYGVVPTAENY--ACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCS 658
Query: 119 VHG 121
+HG
Sbjct: 659 IHG 661
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 214/332 (64%), Gaps = 4/332 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D++ W ++I ++QN E L + MK + DQ T+ +VL AC L L+LG
Sbjct: 175 MITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELG 234
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAV 119
R++H++V++ +D D+ + +AL+DMY KCGSL+ + L+F ++ EK++ W+++I GLA
Sbjct: 235 RQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQ 292
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+GF+ +AL +F+ M + +PN +T + VL AC+HAGLV +G F SM + I P E
Sbjct: 293 NGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGRE 352
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGC++DLL +AG L++A++LI +P+AV W LLG C++H+N+++A A E++ L
Sbjct: 353 HYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKL 412
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P ++G LL N+YA +W +V ++R M+ G++K PG SWIE+ ++V+ F D
Sbjct: 413 DPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKD-PGCSWIEVSKQVHAFILGDN 471
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +EI LS+L ++L YVP+ +L
Sbjct: 472 SHPRIEEIKRELSQLIQRLMRLGYVPDTNFVL 503
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI+ YS + +ALD M G+ P+ T ++VL AC G L+L
Sbjct: 77 MPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD--GLLNL- 133
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++G + DV++ SAL+D Y+K G +L VF ++ +L WNSII G A +
Sbjct: 134 RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQN 193
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E L ++ RM + + T SVL ACT L+E GR+ + + ++
Sbjct: 194 SDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL---KYDQDLIL 250
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K G LEDA L + + + W ++ G
Sbjct: 251 NNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAG 289
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 5/194 (2%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
+ A M + +S D +T + ++ C GA+ R +H +V G++ ++ + L++M
Sbjct: 1 MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
Y K G LD + +F ++ ++N+ W ++I + H+AL M+ E V PN T+
Sbjct: 61 YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
SVL AC GL+ R+ + +V ++D SK G DAL + +
Sbjct: 121 SSVLRACD--GLLN--LRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVF-NEM 175
Query: 206 FQPNAVIWGALLGG 219
+ V+W +++GG
Sbjct: 176 ITGDLVVWNSIIGG 189
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 208/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS--PDQVTMATVLSACAHLGALD 58
MP RD ++W MI+C +N + R+AL F+ M+ S PD VT +L ACAHL AL+
Sbjct: 165 MPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALE 224
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G IH Y+M+ G+ + + ++L+ MY++CG LD++ VF + KN+ W+++I GLA
Sbjct: 225 FGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLA 284
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
++G+ EA+ F+ M+ V P+ TF VLSAC+++G+V+EG F M+ + +TP V
Sbjct: 285 MNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNV 344
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
HYGCMVDLL +AGLL+ A +LI S +P++ +W LLG C++H ++ + + L+
Sbjct: 345 HHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIE 404
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+ +G LLLN+Y+ W +V ++R MK I+ PG S IE++ V++F D
Sbjct: 405 LKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQT-TPGCSTIELKGAVHEFVVDD 463
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SH + EIY +L +++ QL++A YV EL + L
Sbjct: 464 VSHSRNREIYETLDEINHQLRIAGYVVELSSEL 496
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 6/214 (2%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI S + ++ L + +M+ GI+ D ++ + + +C L G ++H +
Sbjct: 72 YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIF 131
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G D + +A++D+Y+ C + VF ++ ++ WN +I + +AL+
Sbjct: 132 KDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALS 191
Query: 129 MFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
+FD M + EP+ VT + +L AC H +E G R M GY + ++
Sbjct: 192 LFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYR--DALNLCNSLI 249
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ S+ G L+ A E+ + N V W A++ G
Sbjct: 250 SMYSRCGCLDKAYEVFKGMG-NKNVVSWSAMISG 282
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 207/331 (62%), Gaps = 4/331 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W +MI Y +N +F +AL F M ++ + PD T A+V++ACA LGAL
Sbjct: 160 MSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNA 219
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++ +++ + +AL+DMYAKCG +D S VF ++ ++ WN++I GLA+H
Sbjct: 220 KWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIH 279
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A +F RM E+V P+ +TFI +L+AC+H GLVEEGR+ F M + I P++EH
Sbjct: 280 GLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEH 339
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AGL+E+A +I+ + +P+ VIW ALL C++HR E+ +A+ + LE
Sbjct: 340 YGTMVDLLGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRLE 399
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
SG LL NMY ++ W ++R MK G+ K G SW+E+ ++QF A+ +S
Sbjct: 400 ---SGDFVLLSNMYCSLNNWDGAERVRRMMKTRGVRK-SRGKSWVELGDGIHQFNAAYQS 455
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP IY L L ++ KL + P + +L
Sbjct: 456 HPEMKSIYRVLEGLIQRAKLEGFTPLTDLVL 486
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 39/218 (17%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--------- 89
PD + VL C L + H V+ +GF + ++L+ YA+C
Sbjct: 68 PDPTVLHRVLERCRVSTDLKTATKTHARVVVLGFATYPSLVASLISTYAQCHRPHIALHV 127
Query: 90 --------------------GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
G D + VF K+ +++ WNS+I G + +AL++
Sbjct: 128 FSRILDLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSI 187
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE-HY---GCMV 185
F RM+ VEP+G TF SV++AC G + + G + VE +Y ++
Sbjct: 188 FRRMLSAKVEPDGFTFASVVTACARLGALGNAK-----WVHGLMVEKRVELNYILSAALI 242
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
D+ +K G ++ + ++ + + +W A++ G +H
Sbjct: 243 DMYAKCGRIDVSRQVFEEVA-RDHVSVWNAMISGLAIH 279
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 197/327 (60%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W+ MI Y + EAL F M+ G++ + ++ +VLS C L +LD G
Sbjct: 298 MKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHG 357
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ FD D+Y+ S L+ MY KCG+L R+ VF + K++ WNS+I G + H
Sbjct: 358 KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH 417
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M V P+ VTFI VLSAC+++G V+EG F +M C Y + P +EH
Sbjct: 418 GLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEH 477
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +A + +A++L+ +P+A++WGALLG C+ H L++A +AV +L LE
Sbjct: 478 YACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE 537
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD-K 299
P N+G LL NMYA RW +V +R +K + K PG SWIE+E+KV+ F D K
Sbjct: 538 PKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTK-LPGCSWIEVEKKVHMFTGGDSK 596
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
HP I L KL L+ A Y P+
Sbjct: 597 GHPEQPIIMKMLEKLGGLLREAGYCPD 623
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R + SW M+ Y + +Q REAL F +M + V+ ++S G L
Sbjct: 50 LPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR----NTVSWNGLISGHIKNGMLSEA 105
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R V D +V +++V Y + G + + +F+ + KN+ W ++ GL
Sbjct: 106 RR----VFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE 161
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A +FD M ++V V +++ G ++E R F M +T
Sbjct: 162 GRVDDARKLFDMMPEKDV----VAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT----- 212
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ MV ++ G ++ A +L + N V W A+L G
Sbjct: 213 WTAMVSGYARNGKVDVARKLFEVMP-ERNEVSWTAMLLG 250
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 23/260 (8%)
Query: 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH--LYVMQI 70
I CY++N Q A F+E +P + TV S A + A R+ L + +
Sbjct: 29 IACYARNGQLDHARKVFDE------TP--LPHRTVSSWNAMVAAYFEARQPREALLLFEK 80
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMF 130
+ + L+ + K G L + VF + ++N+ W S++ G +G EA +F
Sbjct: 81 MPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLF 140
Query: 131 DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK 190
M ++NV V++ +L G V++ R+ F M +V M+ +
Sbjct: 141 WHMPHKNV----VSWTVMLGGLLQEGRVDDARKLFDMMP-----EKDVVAVTNMIGGYCE 191
Query: 191 AGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL 250
G L++A L + N V W A++ G + +++A + E+M E N + +L
Sbjct: 192 EGRLDEARALFDEMP-KRNVVTWTAMVSGYARNGKVDVAR-KLFEVMP-ERNEVSWTAML 248
Query: 251 LNMYAEVSRWAEVTKIRVAM 270
L Y R E + + AM
Sbjct: 249 LG-YTHSGRMREASSLFDAM 267
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+A+V Y + +LL+F K+ ++N WN +I G +G EA +FD M NV
Sbjct: 59 NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNV- 117
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
V++ S++ G V E R F M V + M+ L + G ++DA +
Sbjct: 118 ---VSWTSMVRGYVRNGDVAEAERLFWHMP-----HKNVVSWTVMLGGLLQEGRVDDARK 169
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259
L + + + G C+ R L+ A +E+ P + ++ A VS
Sbjct: 170 LFDMMPEKDVVAVTNMIGGYCEEGR-LDEARALFDEM----PKRN-----VVTWTAMVSG 219
Query: 260 WAEVTKIRVAMKELGIEKRCPGSSWIEM 287
+A K+ VA K + SW M
Sbjct: 220 YARNGKVDVARKLFEVMPERNEVSWTAM 247
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +++WT MI+ +QN E L FN+MK G+ P A +++C+ LG+LD G
Sbjct: 370 MPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNG 429
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++Q+G D + +G+AL+ MY++CG ++ + VF + + WN++I LA H
Sbjct: 430 QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQH 489
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ ++++M+ E++ P+ +TF+++LSAC+HAGLV+EGR F +M Y ITPE +H
Sbjct: 490 GHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDH 549
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y ++DLL +AG+ +A + S F+P A IW ALL GC +H N+E+ A + L+ L
Sbjct: 550 YSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELM 609
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G L NMYA + +W EV ++R M+E G++K PG SWIE+E V+ F D
Sbjct: 610 PQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKE-PGCSWIEVENMVHVFLVDDAV 668
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +Y L +L +++ YVP+ + +L
Sbjct: 669 HPEVHAVYRYLEQLVHEMRKLGYVPDTKFVL 699
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 43/283 (15%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W MI+ Y + EA D M + GI D+ T +V+SA ++ G ++GR++H Y
Sbjct: 240 VAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAY 299
Query: 67 VM----QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI--------- 113
V+ Q + + +AL+ +Y +CG L + VF K+ K+L WN+I
Sbjct: 300 VLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARR 359
Query: 114 ----------------------IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
I GLA +GF E L +F++M E +EP + +++
Sbjct: 360 IEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIAS 419
Query: 152 CTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C+ G ++ G++ + G+ + V + ++ + S+ GL+E A + + + ++
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVGN--ALITMYSRCGLVEAADTVFLTMPYV-DS 476
Query: 211 VIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
V W A++ H + + I + E M+ E P+ + T+L
Sbjct: 477 VSWNAMIAALAQHGH-GVQAIQLYEKMLKEDILPDRITFLTIL 518
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 117/287 (40%), Gaps = 53/287 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +S+ MIT +S + AL F +MK G PD T ++VL A + + +
Sbjct: 90 MSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETH 149
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGS----------------LDR--------- 94
+++H V + G + +AL+ Y C S D
Sbjct: 150 CQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEP 209
Query: 95 --SLLVFFKLREKNL---------------FCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+ ++ +R +L WN++I G GF EA + RM
Sbjct: 210 AWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLG 269
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRR------RFLSMTCGYSITPEVEHYGCMVDLLSKA 191
++ + T+ SV+SA ++AGL GR+ R + G+ + + ++ L ++
Sbjct: 270 IQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV---LSVNNALITLYTRC 326
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
G L +A + + + V W A+L GC R +E A+ E+ +
Sbjct: 327 GKLVEARRVFDKMPVK-DLVSWNAILSGCVNARRIEEANSIFREMPV 372
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 205/328 (62%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+ +SW+ M+ YSQ EA+ FN+M +G+ P T+ +VLSACA LG LD+G
Sbjct: 325 IPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVG 384
Query: 61 REIH-LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R ++ Y++ ++ V + +A +DM+AKCG + + +F + +KN+ WN++I A+
Sbjct: 385 RCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHAL 444
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + EAL +F + + P+ +T+I VLSAC+H+GLV EGR F M Y I P E
Sbjct: 445 HGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAE 504
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CM+DLL K GLLE+A E+ RS + WGALL C++H N+EI A ++L+ L
Sbjct: 505 HYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGL 564
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P++SG L+ +YA S+W +V IR M++ G++K PG S IE++ K ++F A+D
Sbjct: 565 DPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKN-PGCSSIEVDGKFHEFLAADV 623
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SH S++IY++L + KL Y+ +
Sbjct: 624 SHAHSEDIYAALENIYLHSKLEGYISHV 651
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 33/261 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
M RD++SWTT++ Y++ EA F M +G P++VT+ SA +G L L
Sbjct: 192 MADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGL 251
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDM-------------------------------YAK 88
GR +H V++ G + V + +ALVDM YAK
Sbjct: 252 GRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAK 311
Query: 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
CG L+ + +F ++ +N W+ ++ + EA+ +F+ MI VEP T +SV
Sbjct: 312 CGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSV 371
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
LSAC G ++ GR + + + + V +D+ +K G + A L R+ +
Sbjct: 372 LSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNME-DK 430
Query: 209 NAVIWGALLGGCKLHRNLEIA 229
N V W ++ LH E A
Sbjct: 431 NVVSWNTMIVAHALHGQSEEA 451
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 13/271 (4%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TM+ + + + AL F + + D T+ V + A + IH +
Sbjct: 101 ATMMRGFLRAGKPAHALALFRRVLRDRLPADARTI--VFAVKAATTSSSPAEAIHCVAFK 158
Query: 70 IGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
GF V +G+ALV MYA SL + +F ++ ++++ W ++++G A G EA
Sbjct: 159 RGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWR 218
Query: 129 MFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVD 186
+F RM+ PN VT ++ SA GL+ GR + G ++ +E+ +VD
Sbjct: 219 VFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLEN--ALVD 276
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN-NSG 245
+ K G + A E+ + + W +++ +LE A E+ PN N+
Sbjct: 277 MFGKCGCVASAKEIFDGMPIK-DVYSWTSMVSAYAKCGDLENAGKLFKEI----PNRNAV 331
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
+ ++ Y++ + E +I M G+E
Sbjct: 332 SWSCMVAAYSQANLPEEAMRIFNDMIAAGVE 362
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 204/329 (62%), Gaps = 3/329 (0%)
Query: 5 DIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
D++ W TM++ YSQN++F E AL+ F +M+ G P+ + V+SAC++L + G++I
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365
Query: 64 HLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ + + + +AL+ MY+KCG+L + +F ++ E N NS+I G A HG
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGI 425
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E+L +F M+ + P +TFISVLSAC H G VEEG F M ++I PE EHY
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 485
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL +AG L +A LI F P ++ W +LLG C+ H N+E+A A N+++ LEP+
Sbjct: 486 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 545
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N+ +L NMYA RW EV +R M++ G++K+ PG SWIE++++++ F A D SHP
Sbjct: 546 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKK-PGCSWIEVKKRIHVFVAEDSSHP 604
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
EIY L ++ ++K A YVP++ L
Sbjct: 605 MIKEIYEFLEEMSGKMKRAGYVPDVRWAL 633
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +SW +MI Y Q+++ +AL F EM G++ D T+A+VL+A L L G +
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH-G 121
H +++ GF + ++GS L+D+Y+KC G + VF ++ E +L WN+++ G + +
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI-TPEVEH 180
F +AL F +M PN +F+ V+SAC++ +G ++ S+ I + +
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLALKSDIPSNRISV 381
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + SK G L+DA L + N V +++ G H
Sbjct: 382 DNALIAMYSKCGNLQDARRLF-DRMAEHNTVSLNSMIAGYAQH 423
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 30/233 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D++S+ T+I+ Y+ + AL F+ M+ G+ D T++ V++AC D+G
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD----DVG 155
Query: 61 --REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIEGL 117
++H + GFD V + +AL+ Y K G LD + VF+ + ++ WNS+I
Sbjct: 156 LIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAY 215
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFL 166
H +AL +F M+ + + T SVL+A T H L++ G +
Sbjct: 216 GQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNS 275
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ G ++DL SK G + +P+ V+W ++ G
Sbjct: 276 HVGSG------------LIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + +S +MI Y+Q+ E+L F M I+P +T +VLSACAH G ++ G
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 464
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+ +M+ F+I+ S ++D+ + G L + + ++ W S++
Sbjct: 465 WN-YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523
Query: 118 AVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEE 160
HG A+ ++++ +EP N ++ + + AG EE
Sbjct: 524 RTHGNIELAVKAANQVL--QLEPSNAAPYVVLSNMYASAGRWEE 565
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C L G+ +H ++ Y + + +Y+KCG L + F + + N
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENV-EPNGVTFISVLSACTHAG 156
+F +N+II +A E+ + +++ + EP+ V++ +++SA G
Sbjct: 74 VFSFNAIIA-----AYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCG 119
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 200/320 (62%), Gaps = 1/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D +SWT +I + +N + EA+D F M + PD VT+ V+SACA +GAL LG
Sbjct: 164 MPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLG 223
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V++ G + +V + ++L+DMYA+CG + + VF +R++ + WNS+I GLA +
Sbjct: 224 MWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAAN 283
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F+ M + +P+ VT VL+AC+HAGL E G R + MT Y I +EH
Sbjct: 284 GLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEH 343
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AG L++A+ ++ + +PN V+ GALL GC++H +L++A + L L+
Sbjct: 344 YGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQLMQHLFELD 403
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P LL N+YA V +W K+R MK G++KR PG S +E++ V++F +SD+S
Sbjct: 404 PGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKR-PGHSIVEIDGDVHEFVSSDRS 462
Query: 301 HPASDEIYSSLSKLDEQLKL 320
HP ++EI L L ++ +
Sbjct: 463 HPQAEEIGQMLGLLRHEMAM 482
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 126/307 (41%), Gaps = 72/307 (23%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLGR 61
RD++SWT+ I ++ A + M +S +P+ VT+ TVLSACA + L R
Sbjct: 30 RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89
Query: 62 EIHLYV-------------------------------MQIGFDI----DVYIGSALVDMY 86
+ L + +Q+ FD V + +V
Sbjct: 90 PLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQL-FDTMPVRSVVTYNTMVSGL 148
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+ G +D + VF + + W ++I+G +G EA+ F M+ ++VEP+ VT I
Sbjct: 149 MRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLI 208
Query: 147 SVLSACTHAG-----------LVEEGRRRFLSMT---------CG-YSITPEVEH----- 180
+V+SAC G ++ +G R + + CG + +V H
Sbjct: 209 AVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKR 268
Query: 181 ----YGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ M+ L+ GL +A+EL +R F+P+AV +L C H L +
Sbjct: 269 TVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACS-HAGLTEHGLRY 327
Query: 234 NELMILE 240
+LM E
Sbjct: 328 YDLMTTE 334
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 204/329 (62%), Gaps = 3/329 (0%)
Query: 5 DIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
D++ W TM++ YSQN++F E AL+ F +M+ G P+ + V+SAC++L + G++I
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365
Query: 64 HLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ + + + +AL+ MY+KCG+L + +F ++ E N NS+I G A HG
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGI 425
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E+L +F M+ + P +TFISVLSAC H G VEEG F M ++I PE EHY
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 485
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL +AG L +A LI F P ++ W +LLG C+ H N+E+A A N+++ LEP+
Sbjct: 486 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 545
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N+ +L NMYA RW EV +R M++ G++K+ PG SWIE++++++ F A D SHP
Sbjct: 546 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKK-PGCSWIEVKKRIHVFVAEDSSHP 604
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
EIY L ++ ++K A YVP++ L
Sbjct: 605 MIKEIYEFLEEMSGKMKRAGYVPDVRWAL 633
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +SW +MI Y Q+++ +AL F EM G++ D T+A+VL+A L L G +
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH-G 121
H +++ GF + ++GS L+D+Y+KC G + VF ++ E +L WN+++ G + +
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI-TPEVEH 180
F +AL F +M PN +F+ V+SAC++ +G ++ S+ I + +
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLALKSDIPSNRISV 381
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + SK G L+DA L + N V +++ G H
Sbjct: 382 DNALIAMYSKCGNLQDARRLF-DRMAEHNTVSLNSMIAGYAQH 423
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 30/233 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D++S+ T+I+ Y+ + AL F+ M+ G+ D T++ V++AC D+G
Sbjct: 100 IPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD----DVG 155
Query: 61 --REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIEGL 117
++H + GFD V + +AL+ Y K G LD + VF+ + ++ WNS+I
Sbjct: 156 LIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAY 215
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFL 166
H +AL +F M+ + + T SVL+A T H L++ G +
Sbjct: 216 GQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNS 275
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ G ++DL SK G + +P+ V+W ++ G
Sbjct: 276 HVGSG------------LIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + +S +MI Y+Q+ E+L F M I+P +T +VLSACAH G ++ G
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 464
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+ +M+ F+I+ S ++D+ + G L + + ++ W S++
Sbjct: 465 WN-YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523
Query: 118 AVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEE 160
HG A+ ++++ +EP N ++ + + AG EE
Sbjct: 524 RTHGNIELAVKAANQVL--QLEPSNAAPYVVLSNMYASAGRWEE 565
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C L G+ +H ++ Y + + +Y+KCG L + F + + N
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENV-EPNGVTFISVLSACTHAG 156
+F +N+II +A E+ + +++ + EP+ V++ +++SA G
Sbjct: 74 VFSFNAIIA-----AYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCG 119
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 206/331 (62%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W+ MI Y + REAL F+EM ++G + + T+ +VL+ACA +G LD G
Sbjct: 206 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRG 265
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV G + + +G+ALVDMY+KCG++ ++ VF + E+N++ W S + GLA++
Sbjct: 266 KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMN 325
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L +F RM ++PNGV+F++VL C+ AGLV+EGR F SM Y + P EH
Sbjct: 326 GMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEH 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+DA+ I +P+ +WGALL ++H ++++ A+++L+ +E
Sbjct: 385 YGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIE 444
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N L N+YAE W V+++R MK G+ K+ PG S IE++ KV++F +
Sbjct: 445 SENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGV-KKVPGWSTIEVDGKVHEFYVGGRL 503
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI L+++D +L+L Y +L
Sbjct: 504 HPRYNEIELMLAEMDRRLRLQGYTANTREVL 534
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A+V A G +D + +F + +++ W+++I G G + EAL +FD M+
Sbjct: 179 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 238
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMT-------------CGYSI 174
T +SVL+AC G ++ G R R + M+ CG +
Sbjct: 239 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVV 298
Query: 175 TP----------EVEHYGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCK 221
T V + V L+ G+ + L+L + + QPN V + A+L GC
Sbjct: 299 TAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCS 358
Query: 222 L 222
+
Sbjct: 359 M 359
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW MI Y+Q+ + + + MK G PD+VT+ ++L AC L AL+ G
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++G + D + ++L+ MY+KCG + + VF K+ ++ WN+++ G H
Sbjct: 538 KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F RM+ E V PN +TF +V+SAC AGLV+EGR F M + + P +H
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A E I+ +P+ +W ALLG CK H N+++A A + ++ LE
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+ L N+YA+ RW + TK+R M + G++K G S IE++ +++ F A D +
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKD-RGESSIEIDGRIHTFVAEDCA 776
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D I++ L L +++K A Y P++ +L
Sbjct: 777 HPEIDSIHAELEMLTKEMKEAGYTPDMRFVL 807
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 123/220 (55%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W++MI Y+ N +A D F MK++ I P+++T ++L AC + L+
Sbjct: 139 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKA 198
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH V G + DV + +AL+ MY+KCG + + +F K++E+N+ W +II+ A H
Sbjct: 199 REIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQH 258
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+EA ++++M+ + PN VTF+S+L++C + G RR S + +V
Sbjct: 259 RKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG-RRIHSHISERGLETDVVV 317
Query: 181 YGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGG 219
++ + K ++DA E R SK + + W A++ G
Sbjct: 318 ANALITMYCKCNCIQDARETFDRMSK--RDVISWSAMIAG 355
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 126/223 (56%), Gaps = 9/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT +I +Q+++ EA + + +M +GISP+ VT ++L++C AL+ G
Sbjct: 240 MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG 299
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH ++ + G + DV + +AL+ MY KC + + F ++ ++++ W+++I G A
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359
Query: 121 GFA-----HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSI 174
G+ E + +RM E V PN VTF+S+L AC+ G +E+GR+ ++ G+
Sbjct: 360 GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFES 419
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ + ++ +K G + +A E + S N V W +LL
Sbjct: 420 DRSLQ--TAIFNMYAKCGSIYEA-EQVFSKMENKNVVAWASLL 459
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 1 MPARDIISWTTMITCYSQNK-QFREALDA----FNEMKNSGISPDQVTMATVLSACAHLG 55
M RD+ISW+ MI Y+Q+ Q +E+LD M+ G+ P++VT ++L AC+ G
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHG 400
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYA---------------------------- 87
AL+ GR+IH + ++GF+ D + +A+ +MYA
Sbjct: 401 ALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLT 460
Query: 88 ---KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
KCG L + VF ++ +N+ WN +I G A G + + M E +P+ VT
Sbjct: 461 MYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVT 520
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
IS+L AC +E G + + + + ++ + SK G + +A +
Sbjct: 521 IISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579
Query: 205 KFQPNAVIWGALLGGCKLH 223
+ V W A+L G H
Sbjct: 580 S-NRDTVAWNAMLAGYGQH 597
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 120/233 (51%), Gaps = 6/233 (2%)
Query: 21 QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80
+ +EA+ +K G+ + T ++ CA L + G+ +H + ++G ID+Y+G+
Sbjct: 58 RLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGN 117
Query: 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP 140
+L++ Y+K G + VF ++ +++ W+S+I A + +A F+RM N+EP
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177
Query: 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200
N +TF+S+L AC + ++E+ R ++ + +V ++ + SK G + A E+
Sbjct: 178 NRITFLSILKACNNYSMLEKA-REIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236
Query: 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+ K + N V W A++ HR L A + E M+ + PN + +LL
Sbjct: 237 FQKMK-ERNVVSWTAIIQANAQHRKLNEA-FELYEKMLQAGISPNAVTFVSLL 287
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ W+ +I +++N + E++ F +M ++P+ VT A+++ AC+ LG+L GR +
Sbjct: 279 RDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSV 338
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ G ++DV ++ +DMYAKCG + + VF ++ EKN+F W+++I G +HG
Sbjct: 339 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 398
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M N PN VTF+SVLSAC+H+G +EEG F SM+ Y ITP EHY C
Sbjct: 399 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYAC 458
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG +++AL I + +P A WGALLG C++HR E+A +L+ LE +
Sbjct: 459 MVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQ 518
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG +L N+YA+V W V K R+ M E GI K G + IE+E K+Y F++ D+
Sbjct: 519 SGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHK-IVGFTSIEIEEKLYLFSSEDRFAYK 577
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +I S + L E+++ YVP+L +L
Sbjct: 578 NTQIESLWNSLKERMRELGYVPDLRFVL 605
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 156/337 (46%), Gaps = 42/337 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ + W MI + + + F+ M+ SG D + ++ AC ++ A G
Sbjct: 174 VPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEG 233
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ H ++ F D + ++ ++LVDMY KCG LD +L +F ++ +++ W++II G A
Sbjct: 234 KTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFAR 293
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A E+++MF +M+ ++V PN VTF S++ AC+ G +++GR GY I VE
Sbjct: 294 NGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRS-----VHGYMIRNGVE 348
Query: 180 ----HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+Y +D+ +K G + A + + N W ++ G +H
Sbjct: 349 LDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMINGFGMH------------ 395
Query: 236 LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
G C LN++ E+ V ++ ++ + + C S IE ++
Sbjct: 396 ---------GLCAEALNLFYEMR---SVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSM 443
Query: 296 ASDKSHPASDEIYSSL-------SKLDEQLKLASYVP 325
+ D +E Y+ + K+DE L + +P
Sbjct: 444 SRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMP 480
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW T++ +S+NK F + L F M G D + + AC L + H
Sbjct: 77 NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFH 136
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ + D Y+ AL+++Y + GSL+ + VF ++ KN W +I+G
Sbjct: 137 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEF 196
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+F RM E + ++ AC + +EG+ I +
Sbjct: 197 GVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSL 256
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
VD+ K G L+ AL+L ++ + V+W A++ G
Sbjct: 257 VDMYMKCGFLDFALKLFEEISYR-DVVVWSAIIAG 290
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
G + Y + GSL + F + +NL WN+I+ + + ++ L +F RM+ E
Sbjct: 49 FGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEG 108
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
+ + + AC L +G + F S+ + + ++++ ++ G LE+A
Sbjct: 109 KLVDSFNLVFAVKACFGLSLF-QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEA 167
Query: 198 LELIRSSKFQPNAVIWGALLGG 219
++ + N+VIWG ++ G
Sbjct: 168 HKVFEEVPLK-NSVIWGVMIKG 188
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 205/326 (62%), Gaps = 4/326 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
+++++WT MI Y+Q+ + +AL F ++ + + + P+ T++ L ACA LG L LGR
Sbjct: 443 KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502
Query: 62 EIHLYVMQIGFDIDV-YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H Y ++ + +V Y+G+ L+DMY+K G +D + VF ++ +N+ W S++ G +H
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMH 562
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +FD+M +G+TF+ VL AC+H+G+V++G F M G+ ITP EH
Sbjct: 563 GRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEH 622
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A+ELI++ +P AV+W ALL ++H N+E+ A ++L L
Sbjct: 623 YACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELG 682
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G TLL N+YA RW +V +IR MK GI KR PG SWI+ ++ F D+S
Sbjct: 683 AENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKR-PGCSWIQGKKSTTTFFVGDRS 741
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S++IY+ L L +++K YVP+
Sbjct: 742 HPESEQIYNLLLDLIKRIKDMGYVPQ 767
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+I+W+ +I Y+Q EALD F +M+ G+ P+ VT+A++LS CA +GAL G++ H
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 393
Query: 65 LYVMQIGFDI-------DVYIGSALVDMYAKCGS--LDRSLLVFFKLREKNLFCWNSIIE 115
YV++ ++ D+ + + L+DMYAKC S + RS+ + ++KN+ W +I
Sbjct: 394 AYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIG 453
Query: 116 GLAVHGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
G A HG A++AL +F ++ + +++PN T L AC G + GR+ Y+
Sbjct: 454 GYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLH-----AYA 508
Query: 174 ITPEVEHY-----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE 227
+ E E C++D+ SK+G ++ A + + K + N V W +L+ G +H R E
Sbjct: 509 LRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGEE 567
Query: 228 IAHI 231
H+
Sbjct: 568 ALHL 571
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNS---GISPDQVTMATVLSACAHLGALDLGR 61
DI+SW +++ Y Q Q R AL M N + PD +T+ +L ACA + AL G+
Sbjct: 195 DIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGK 254
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H + ++ G DV++G+ALV MYAKC ++ + VF +++K++ WN+++ G + G
Sbjct: 255 QVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIG 314
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
AL++F M E+++ + +T+ +V++ G E F M Y + P V
Sbjct: 315 SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQL-YGLEPNV 370
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I + + L + +M+ G PD T VL AC + +L G +H V
Sbjct: 95 WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHE 125
G +V+I +++V MY +CG+LD + +F ++ E+ ++ WNSI+ G +
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214
Query: 126 ALAMFDRMIYE---NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI----TPEV 178
AL + RM + P+ +T +++L AC ++ G++ G+S+ +V
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ-----VHGFSVRNGLVDDV 269
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + +K + +A ++ K + + V W A++ G
Sbjct: 270 FVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMVTG 309
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT+++T Y + + EAL F++M+ G + D +T VL AC+H G +D G
Sbjct: 544 MKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQG 603
Query: 61 REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIE 115
I+ + M GF I + Y + +VD+ + G L+ ++ + + E W +++
Sbjct: 604 M-IYFHDMVKGFGITPGAEHY--ACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLS 660
Query: 116 GLAVH 120
+H
Sbjct: 661 ASRIH 665
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 188/283 (66%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ISWT+MI+ YSQ QF +A+ F EM + + PD++T+A+VLSACAH+GALD+G
Sbjct: 988 MPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVG 1047
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y+ + + D+Y+G+AL+DMY KCG++++ L VF ++ +++ W S+I GLAV+
Sbjct: 1048 EAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVN 1107
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A AL +F M+ E V P TF+ VL AC HAG+V++G F SM Y +TPE++H
Sbjct: 1108 GSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKH 1167
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS++G L A E I+ P+ V+W LL ++H NL +A IA +L+ +
Sbjct: 1168 YGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETD 1227
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS 283
P+NSG L N YA +RW +V K+R M+E + K SS
Sbjct: 1228 PSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSS 1270
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 136/285 (47%), Gaps = 37/285 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I Y + +++ E L F EM+ + + D VTM V+ AC LG +
Sbjct: 856 MSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVV 915
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y+ + ++DVY+G+ L+DMY + +D + VF ++R++N+ WN++I G
Sbjct: 916 DAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKA 975
Query: 121 G-----------FAH--------------------EALAMFDRMIYENVEPNGVTFISVL 149
G H +A+ +F M+ V+P+ +T SVL
Sbjct: 976 GNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVL 1035
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC H G ++ G Y + ++ ++D+ K G +E L + + +
Sbjct: 1036 SACAHIGALDVG-EAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMG-KRD 1093
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLLL 251
+V W +++ G ++ + + A + + LM+ E P + + +LL
Sbjct: 1094 SVSWTSVIAGLAVNGSADSA-LNLFSLMLREGVRPTHGTFVGVLL 1137
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + W MI +SQ Q EA+ +N M + + + +T +L ACA + +
Sbjct: 756 IPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVSCT 815
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V+++GFD D+++ +AL+ YA L + VF ++ E++L WNS+I G
Sbjct: 816 -TVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRC 874
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
E L +F+ M +V+ + VT + V+ ACT G
Sbjct: 875 RRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG 910
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 203/318 (63%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +I+W +I+ YSQN + L+ F +MK+SG+ PD T+ +VLS+CAHLGA +G
Sbjct: 214 MPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 273
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+ V GF +V++ +AL+ MYA+CG+L ++ VF + K+L W ++I +H
Sbjct: 274 QEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMH 333
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L +FD MI + P+G F+ VLSAC+H+GL ++G F +M Y + P EH
Sbjct: 334 GMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEH 393
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++A+E I S +P+ +WGALLG CK+H+N+++A +A +++ E
Sbjct: 394 YSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFE 453
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY L+ N+Y++ + +IRV M+E K+ PG S++E + KV+ F A D+S
Sbjct: 454 PMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKK-PGYSYVEHKGKVHLFLAGDRS 512
Query: 301 HPASDEIYSSLSKLDEQL 318
H ++E++ L +L+ +
Sbjct: 513 HEQTEEVHRMLDELETSV 530
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 2/217 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + +I+ Y+ N + +A F MK +G+S D VT+ ++ C L LGR +H
Sbjct: 119 VCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGE 178
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G +V + ++ + MY KCGS++ +F ++ K L WN++I G + +G A++
Sbjct: 179 CVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 238
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L +F++M V P+ T +SVLS+C H G + G + + P V ++
Sbjct: 239 LELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG-QEVGELVEANGFAPNVFLSNALIS 297
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++ G L A + + + V W A++G +H
Sbjct: 298 MYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMH 333
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 124/303 (40%), Gaps = 52/303 (17%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
SW + + F E++ + M SG SPD + +L +CA L G+++H +V
Sbjct: 17 SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF--CWNSIIEGLAVHGFAHE 125
++ G + + ++ +AL+ MY KCG ++ + VF + + C+N++I G + +
Sbjct: 77 IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACT-------------------------------- 153
A MF RM V + VT + ++ CT
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFIT 196
Query: 154 ---HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
G VE GRR F M IT + ++ S+ GL D LEL ++SS
Sbjct: 197 MYMKCGSVESGRRLFDEMPVKGLIT-----WNAVISGYSQNGLAYDVLELFEQMKSSGVC 251
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN----NSGYCTLLLNMYAEVSRWAEV 263
P+ ++L C H + V EL +E N N L++MYA A+
Sbjct: 252 PDPFTLVSVLSSCA-HLGAKKIGQEVGEL--VEANGFAPNVFLSNALISMYARCGNLAKA 308
Query: 264 TKI 266
+
Sbjct: 309 RAV 311
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 205/330 (62%), Gaps = 5/330 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW+ +I+ Y QN + EAL F EM +G+ D+V + +VLSACAHL + G
Sbjct: 224 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 283
Query: 61 REIHLYVMQIGFDIDVYIGSALV----DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
+ IH V+++G + V + +AL+ DMY KCG ++ +L VF + EK + WN++I G
Sbjct: 284 KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG 343
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LAV+G +L MF M V PN +TF+ VL AC H GLV+EGR F SM + I P
Sbjct: 344 LAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP 403
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
V+HYGCMVDLL +AGLL +A +LI S P+ WGALLG CK H + E+ +L
Sbjct: 404 NVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKL 463
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ L+P++ G+ LL N++A W +V ++R MK+ G+ K PG S IE V++F A
Sbjct: 464 IELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK-TPGCSLIEANGVVHEFLA 522
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
DK+HP +++ L+++ ++LK+ Y P+
Sbjct: 523 GDKTHPWINKVEGMLNEMAKRLKMEGYAPD 552
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 50/254 (19%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG-REIHLYV 67
W TM+ Y Q+ +AL + M + + PD T V+ ACA + L+ G +EIH +V
Sbjct: 97 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHV 155
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLD--RSLL---------------------------- 97
+++GFD DVY+ + L++MYA CG++ R L
Sbjct: 156 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVM 215
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+F ++ EK++ W+++I G +G EAL MF M + + V +SVLSAC
Sbjct: 216 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 275
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCM--------VDLLSKAGLLEDALELIRSSK 205
H +V+ G+ M G I +E Y + D+ K G +E+ALE+ +
Sbjct: 276 HLSIVKTGK-----MIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGME 330
Query: 206 FQPNAVIWGALLGG 219
+ W AL+ G
Sbjct: 331 -EKGVSSWNALIIG 343
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 206/331 (62%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W+ MI Y + REAL F+EM ++G + + T+ +VL+ACA +G LD G
Sbjct: 1411 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRG 1470
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV G + + +G+ALVDMY+KCG++ ++ VF + E+N++ W S + GLA++
Sbjct: 1471 KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMN 1530
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L +F RM ++PNGV+F++VL C+ AGLV+EGR F SM Y + P EH
Sbjct: 1531 GMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEH 1589
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+DA+ I +P+ +WGALL ++H ++++ A+++L+ +E
Sbjct: 1590 YGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIE 1649
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N L N+YAE W V+++R MK G+ K+ PG S IE++ KV++F +
Sbjct: 1650 SENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGV-KKVPGWSTIEVDGKVHEFYVGGRL 1708
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI L+++D +L+L Y +L
Sbjct: 1709 HPRYNEIELMLAEMDRRLRLQGYTANTREVL 1739
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV +A+V A G +D + +F + +++ W+++I G G + EAL +FD M+
Sbjct: 1384 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 1443
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDL 187
T +SVL+AC G ++ G R R + M+ +VD+
Sbjct: 1444 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGT--------ALVDM 1495
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G + A+E+ S + N W + + G ++
Sbjct: 1496 YSKCGAVVTAMEVFESMA-ERNVYTWTSAVSGLAMN 1530
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 205/333 (61%), Gaps = 7/333 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI SW ++ + + Q L + M +GI PD VT+ TVL AC+HL AL G
Sbjct: 218 MREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHG 277
Query: 61 REIHLYVMQIGF-----DID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
REIH Y++ G DID V + +A++DMYAKCGS+ + LVF ++ K++ WN +I
Sbjct: 278 REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMI 337
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G +HG+ +EAL MF RM ++P+ VTF+ VLSAC+HAG V +GR M Y +
Sbjct: 338 MGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDV 397
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +EHY C++D+L +AG L++A EL + + N V+W ALL C+LH++ +A +A
Sbjct: 398 APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQ 457
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+ LEP + G L+ N+Y V R+ EV ++R M++ + ++ PG SWIE++ V+ F
Sbjct: 458 RVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNV-RKTPGCSWIELKNGVHVF 516
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
++D++HP + IY+ L+ L +L YVP++
Sbjct: 517 VSADRAHPEAYSIYAGLNSLTARLCEHGYVPDV 549
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 152/342 (44%), Gaps = 47/342 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++ W M+ Y+Q QF L+ F M + + P + T+ +LS A +G L+ G
Sbjct: 117 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNG 176
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH + M++G+D V + ++L+DMY KC ++ +L +F +REK++F WNSI
Sbjct: 177 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQC 236
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L + DRM+ ++P+ VT +VL AC+H + GR GY I +
Sbjct: 237 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGRE-----IHGYMIVSGLGK 291
Query: 181 YG----------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
G ++D+ +K G + DA L+ + W ++ G +H
Sbjct: 292 DGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMXNKDVASWNIMIMGYGMH------- 343
Query: 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
GY L M+ SR EV + +G+ C + ++ R
Sbjct: 344 --------------GYGNEALEMF---SRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 386
Query: 291 V-------YQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
Y A + + + ++ +LDE +LA +P
Sbjct: 387 FLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 428
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 104/198 (52%), Gaps = 6/198 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ ++ +I+ + N E + + +M+N G+ PD+ T + AC L L++ ++IH
Sbjct: 23 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKAC--LDVLEI-KKIH 79
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ + G ++DV+IGSALV+ Y K G ++ + + F +L +++ WN+++ G A G
Sbjct: 80 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 139
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEHYGC 183
L F RM E+V P+ T +LS G + GR +M GY V +
Sbjct: 140 MVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSN--S 197
Query: 184 MVDLLSKAGLLEDALELI 201
++D+ K +EDALE+
Sbjct: 198 LIDMYGKCKCIEDALEIF 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 85 MYAKCGSLDRSLLVFFK-LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
MY+KC ++ +L +F E N+F +N+II G +GF E + +M E V P+
Sbjct: 1 MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60
Query: 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
TF + AC + ++ + + + +V +V+ K GL+E A
Sbjct: 61 TFPCAIKACLDVLEI----KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 116
Query: 204 SKFQPNAVIWGALLGG 219
+ + V+W A++ G
Sbjct: 117 LPIR-DVVLWNAMVNG 131
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 205/343 (59%), Gaps = 13/343 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-----------SGISPDQVTMATVLS 49
M RD+++W TMIT Y ++ +AL ++M+N + P+ +T+ T+L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+CA L AL G+EIH Y ++ DV +GSALVDMYAKCG L S VF ++ +KN+
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WN II +HG EA+ + M+ + V+PN VTFISV +AC+H+G+V+EG R F M
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN-AVIWGALLGGCKLHRNLEI 228
Y + P +HY C+VDLL +AG +++A +L+ N A W +LLG ++H NLEI
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
IA L+ LEPN + + LL N+Y+ W + T++R MKE G+ K PG SWIE
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKE-PGCSWIEHG 764
Query: 289 RKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+V++F A D SHP S+++ L L E+++ YVP+ +L
Sbjct: 765 DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVL 807
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 30/253 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+++W T+++ QN+Q EAL+ EM G+ PD+ T+++VL AC+HL L G+E
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 63 IHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y ++ G D + ++GSALVDMY C + VF + ++ + WN++I G + +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG-----------LVEEG--RRRFLS 167
EAL +F M + N T V+ AC +G +V+ G R RF+
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ 443
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
T ++D+ S+ G ++ A+ + + + + V W ++ G + E
Sbjct: 444 NT--------------LMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGYVFSEHHE 488
Query: 228 IAHIAVNELMILE 240
A + ++++ LE
Sbjct: 489 DALLLLHKMQNLE 501
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 20/263 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDLGRE 62
R I W MI YSQN+ +EAL F M+ S G+ + TMA V+ AC GA
Sbjct: 367 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA 426
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +V++ G D D ++ + L+DMY++ G +D ++ +F K+ +++L WN++I G
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 123 AHEALAMFDRMIYENVE-------------PNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
+AL + +M +N+E PN +T +++L +C + +G + +
Sbjct: 487 HEDALLLLHKM--QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYA 543
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++ +V +VD+ +K G L+ + ++ Q N + W ++ +H N + A
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEA 602
Query: 230 HIAVNELMI--LEPNNSGYCTLL 250
+ +M+ ++PN + ++
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVF 625
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ ++ REA+ + +M GI PD +L A A L ++LG++IH +V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 69 QIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G+ +D V + + LV++Y KCG VF ++ E+N WNS+I L AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
F M+ ENVEP+ T +SV++AC++ L M G + +V YG
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN-----------LPMPEGLMMGKQVHAYG 228
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG---ALDLG 60
R+ +SW ++I+ +++ AL+AF M + + P T+ +V++AC++L L +G
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y ++ G +++ +I + LV MY K G L S ++ ++L WN+++ L +
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL M+ E VEP+ T SVL AC+H ++ G+
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
Length = 534
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 198/318 (62%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SW I YSQ + + +A+ FN M+ + PD TMA ++SACA LG+L +
Sbjct: 217 MPDRNVNSWNMAIAAYSQERSWADAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVA 276
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + + +++ ++ ++L+DMYAKCGS+ ++ L+F + K+ +N +I LA H
Sbjct: 277 RQVHGILRKGCVEMNFHVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARH 336
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD M E ++P+ VT + VLSAC HAGLV +G+ F SM Y+I +H
Sbjct: 337 GHGRDALQVFDEMSKERLQPDAVTLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDH 396
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL +AGL+++A EL R+ +P+A +WGAL+ C+ H N+E+ +A EL+ +E
Sbjct: 397 YACMVDLYGRAGLIKEAYELARAMPMEPHAGVWGALINACRKHCNVEVGKVAARELIAIE 456
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N A +W V + +M+ GIEK G SW+E+E V++F + S
Sbjct: 457 PRNPGTYVLLANTLARGQQWEFVETVWQSMRGKGIEK-TAGCSWLEVENVVHEFLMGESS 515
Query: 301 HPASDEIYSSLSKLDEQL 318
HP SDEIYS L L QL
Sbjct: 516 HPNSDEIYSILEHLYLQL 533
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 205/334 (61%), Gaps = 6/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + + SW MI+ Y+QN A+ F +M+ + P+ +T+++ LSACA LGAL LG
Sbjct: 383 MPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG 442
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + +++VY+ +AL+DMY KCGS+ + +F + KN+ WN +I G +H
Sbjct: 443 KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLH 502
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL ++ M+ ++ P TF+SVL AC+H GLV+EG F SMT Y ITP +EH
Sbjct: 503 GQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEH 562
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAV---IWGALLGGCKLHRNLEIAHIAVNELM 237
CMVDLL +AG L++A ELI S+F +AV IWGALLG C +H++ ++A +A +L
Sbjct: 563 CTCMVDLLGRAGQLKEAFELI--SEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLF 620
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
LEP N+GY LL N+Y +++E +R K + K PG + IE+ + + F A
Sbjct: 621 ELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVK-TPGCTLIEIGDRPHVFMAG 679
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D++HP SD IY L KL ++ A Y P+ EA L
Sbjct: 680 DRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAAL 713
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 117/252 (46%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D++++ +I+ YS N +++ F E+ G+ P T+ ++ + G L
Sbjct: 282 MEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLA 341
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V++ G D + + +AL +Y + +D + F + EK + WN++I G A +
Sbjct: 342 GCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQN 401
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+A+F +M NV PN +T S LSAC G + G + + + V
Sbjct: 402 GLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG-KWVHKIIANEKLELNVYV 460
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++D+ K G + +A I S N V W ++ G LH A ++M
Sbjct: 461 MTALIDMYVKCGSIAEA-RCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAH 519
Query: 239 LEPNNSGYCTLL 250
L P +S + ++L
Sbjct: 520 LHPTSSTFLSVL 531
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 45/300 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P+ D + W T++ S + EAL+AF M +G + PD T+A+VL A A + +
Sbjct: 184 VPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTM 239
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR +H + + G ++ + L+ +YAKCG ++ + +F ++ +L +N++I G ++
Sbjct: 240 GRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSI 299
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISV-----------LSACTHAGLVEEGRR----- 163
+G ++ +F ++ + P+ T +++ L+ C HA +V+ G
Sbjct: 300 NGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPV 359
Query: 164 ---------RFLSMTC---GYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSSK---F 206
RF M + PE +E + M+ ++ GL E A+ L + +
Sbjct: 360 STALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNV 419
Query: 207 QPNAVIWGALLGGCKLHRNLEIA----HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262
+PN + + L C L + I NE + L N T L++MY + AE
Sbjct: 420 RPNPLTISSALSACAQLGALSLGKWVHKIIANEKLEL---NVYVMTALIDMYVKCGSIAE 476
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 21/195 (10%)
Query: 38 SPDQVTMA----TVLSACAHLG------ALDLGREIHLYVMQIGFDIDVYIGSALVDMYA 87
SPD + A ++ S+C+ G A R +H + GF D ++ SAL +Y
Sbjct: 110 SPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYF 169
Query: 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI-YENVEPNGVTFI 146
+ + VF + + WN+++ GL+ EAL F RM +V P+ T
Sbjct: 170 TLSRGNDARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLA 225
Query: 147 SVLSACTHAGLVEEGR-RRFLSMTCGYSITPEVEH-YGCMVDLLSKAGLLEDALELIRSS 204
SVL A GR CG + + EH ++ L +K G +E A L
Sbjct: 226 SVLPAAAEVANTTMGRCVHAFGEKCGLA---QHEHVVTGLISLYAKCGDMECARHLFDRM 282
Query: 205 KFQPNAVIWGALLGG 219
+ P+ V + AL+ G
Sbjct: 283 E-GPDLVTYNALISG 296
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 212/327 (64%), Gaps = 5/327 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI+ N+ EAL F M G P++ T+ +VLSAC GAL+ G
Sbjct: 134 MPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETG 193
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H++V + D ++G+ALVDMYAKCG+++ +L VF LR +N WN++I GLA++
Sbjct: 194 KWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMN 253
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G++ +AL MF +M + V P+ VTF+ VL AC+HAG V+ G+ F ++ Y + +E
Sbjct: 254 GYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILE 313
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL+++G L++A +LI +P+ V+W ALLGGC+LH+N+++A ++E +
Sbjct: 314 HYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISE---M 370
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
E SG LL N+YA V RW V +R M+ GIEK PG S +EM+ +++F + DK
Sbjct: 371 EATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEK-IPGCSSVEMDGSIHEFISGDK 429
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP+ D+I++ L ++ +++ YV E
Sbjct: 430 SHPSYDDIHAKLIEIGGRMQQHGYVTE 456
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 43/220 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +S+ +MI Y+ + A F + ++P VT ++++
Sbjct: 72 MPRRDTVSFNSMIHGYAVSGDVGSAQRLFERV----LAPTPVTWTSMVAG---------- 117
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + G ++ + VF ++ E++L WN++I G +
Sbjct: 118 -------------------------FCRAGDVESARRVFEEMPERDLVSWNAMISGCVGN 152
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL +F M+ E PN T +SVLSACT AG +E G +++ + E
Sbjct: 153 RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETG--KWVHVFVEKKRLRWDEF 210
Query: 181 YG-CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G +VD+ +K G +E ALE+ + + N W A++ G
Sbjct: 211 LGTALVDMYAKCGAVELALEVFTGLRAR-NTCTWNAMING 249
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H ++GF + +A + Y G + + VF + ++ +NS+I G AV G
Sbjct: 33 LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE--H 180
A +F+R++ P VT+ S+++ AG VE RR F M PE +
Sbjct: 93 VGSAQRLFERVL----APTPVTWTSMVAGFCRAGDVESARRVFEEM-------PERDLVS 141
Query: 181 YGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLEIA---HIAVN 234
+ M+ L +AL L R F PN ++L C LE H+ V
Sbjct: 142 WNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVE 201
Query: 235 ELMILEPNNSGYCTLLLNMYAE 256
+ + G T L++MYA+
Sbjct: 202 KKRLRWDEFLG--TALVDMYAK 221
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 205/343 (59%), Gaps = 13/343 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-----------SGISPDQVTMATVLS 49
M RD+++W TMIT Y ++ +AL ++M+N + P+ +T+ T+L
Sbjct: 379 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 438
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+CA L AL G+EIH Y ++ DV +GSALVDMYAKCG L S VF ++ +KN+
Sbjct: 439 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 498
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WN II +HG EA+ + M+ + V+PN VTFISV +AC+H+G+V+EG R F M
Sbjct: 499 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 558
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN-AVIWGALLGGCKLHRNLEI 228
Y + P +HY C+VDLL +AG +++A +L+ N A W +LLG ++H NLEI
Sbjct: 559 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 618
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
IA L+ LEPN + + LL N+Y+ W + T++R MKE G+ K PG SWIE
Sbjct: 619 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKE-PGCSWIEHG 677
Query: 289 RKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+V++F A D SHP S+++ L L E+++ YVP+ +L
Sbjct: 678 DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVL 720
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 30/253 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+++W T+++ QN+Q EAL+ EM G+ PD+ T+++VL AC+HL L G+E
Sbjct: 177 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236
Query: 63 IHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y ++ G D + ++GSALVDMY C + VF + ++ + WN++I G + +
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 296
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG-----------LVEEG--RRRFLS 167
EAL +F M + N T V+ AC +G +V+ G R RF+
Sbjct: 297 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ 356
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
T ++D+ S+ G ++ A+ + + + V W ++ G + E
Sbjct: 357 NT--------------LMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHE 401
Query: 228 IAHIAVNELMILE 240
A + ++++ LE
Sbjct: 402 DALLLLHKMQNLE 414
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 20/266 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
M R I W MI YSQN+ +EAL F M+ S G+ + TMA V+ AC GA
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
IH +V++ G D D ++ + L+DMY++ G +D ++ +F K+ +++L WN++I G
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 396
Query: 120 HGFAHEALAMFDRMIYENVE-------------PNGVTFISVLSACTHAGLVEEGRRRFL 166
+AL + +M +N+E PN +T +++L +C + +G +
Sbjct: 397 SEHHEDALLLLHKM--QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIH 453
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+ ++ +V +VD+ +K G L+ + ++ Q N + W ++ +H N
Sbjct: 454 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNG 512
Query: 227 EIAHIAVNELMI--LEPNNSGYCTLL 250
+ A + +M+ ++PN + ++
Sbjct: 513 QEAIDLLRMMMVQGVKPNEVTFISVF 538
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG---ALDLG 60
R+ +SW ++I+ +++ AL+AF M + + P T+ +V++AC++L L +G
Sbjct: 75 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 134
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y ++ G +++ +I + LV MY K G L S ++ ++L WN+++ L +
Sbjct: 135 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 193
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL M+ E VEP+ T SVL AC+H ++ G+
Sbjct: 194 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 235
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDR 94
GI PD +L A A L ++LG++IH +V + G+ +D V + + LV++Y KCG
Sbjct: 5 GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64
Query: 95 SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
VF ++ E+N WNS+I L AL F M+ ENVEP+ T +SV++AC++
Sbjct: 65 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYG 182
L M G + +V YG
Sbjct: 125 -----------LPMPEGLMMGKQVHAYG 141
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 206/326 (63%), Gaps = 3/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+RD I+W I+ Y+QN EA+ F+ MK +G+ P++VT+ VLSACA +GALDLG
Sbjct: 280 MPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLG 339
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++ Y G D+++ +AL+DMYAKCGSL+ + VF + KN WN++I LA H
Sbjct: 340 KQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASH 399
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G A EAL++F+RM E + PN +TF+S+LSAC HAGLV+EG R F M+ + + P++
Sbjct: 400 GKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKI 459
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLLS+AG L +A ++I +P+ V GAL C+ +N++I + L+
Sbjct: 460 EHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLE 519
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L+P+NSG + +Y ++ W + ++R M+E G+ K PG SWIE+ ++ +F + D
Sbjct: 520 LDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTK-TPGCSWIEVGNQLREFLSGD 578
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYV 324
S ++ + + L E+LK Y+
Sbjct: 579 GLTLDSIDVRNIIDLLYEELKKEGYL 604
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 140/257 (54%), Gaps = 17/257 (6%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGRE 62
+D++SW ++++ Y++ REA++ F ++ SG PD++++ +VL AC LG L+LGR
Sbjct: 181 KDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRW 240
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+ +V++ G ++ YIGSAL+ MY+KCG L S +F + ++ WN+ I A +G
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGM 300
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH-- 180
A EA+++F M V+PN VT +VLSAC G ++ G++ Y+ ++H
Sbjct: 301 ADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ-----MDEYATHRGLQHDI 355
Query: 181 --YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++D+ +K G LE A + + N W A++ H + A +++ E M
Sbjct: 356 FVATALIDMYAKCGSLESAQRVFNDMP-RKNDASWNAMISALASHGKAKEA-LSLFERMS 413
Query: 239 LE-----PNNSGYCTLL 250
E PN+ + +LL
Sbjct: 414 DEGGSARPNDITFVSLL 430
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
L +++MK ISP+ T V ACA+L + + R H V ++G D D + +++V
Sbjct: 101 TLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVT 160
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGV 143
MY +CG + VF ++ EK+L WNS++ G A GFA EA+ +F R+ E+ EP+ +
Sbjct: 161 MYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEM 220
Query: 144 TFISVLSACTHAGLVEEGR 162
+ +SVL AC G +E GR
Sbjct: 221 SLVSVLGACGELGDLELGR 239
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 214/366 (58%), Gaps = 36/366 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFR-----------------------------------EA 25
MP RD++SW ++T Y +NK++ EA
Sbjct: 326 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 385
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
++ F +M+ G P+++T++++L AC+ L +G+EIH YV + D+ +AL+ M
Sbjct: 386 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 445
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YAKCG L+ S VF +R K++ WN++I A+HG EAL +FD+M+ V+PN VTF
Sbjct: 446 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTF 505
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
VLS C+H+ LVEEG + F SM + + P+ HY C+VD+ S+AG L +A + I+
Sbjct: 506 TGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP 565
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
+P A WGALL C++++N+E+A I+ +L +EPNN G L N+ W+E ++
Sbjct: 566 MEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQ 625
Query: 266 IRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
+R+ MKE GI K PG SW+++ KV+ F DKS+ SD+IY+ L +L E++K+A Y P
Sbjct: 626 VRILMKERGITK-TPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKP 684
Query: 326 ELEAML 331
+ + +L
Sbjct: 685 DTDYVL 690
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + +T+I+ + + EA+ ++ ++ GI PD ACA G
Sbjct: 124 IPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRV 183
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + G DV++G+AL+ Y KC ++ + VF L +++ W S+
Sbjct: 184 KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 243
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF + + +F M + V+PN +T S+L AC ++ G+
Sbjct: 244 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGK 285
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 50/226 (22%)
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+I ++G L+ + G +R+ +F + + + +++I L HG ++EA+ ++
Sbjct: 95 NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 154
Query: 133 MIYENVEPNGVTFISVLSACTHAG-----------------------------------L 157
+ ++P+ F++ AC +G
Sbjct: 155 LQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC 214
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWG 214
VE RR F + + +V + + K G +++ R S +PN +
Sbjct: 215 VEGARRVFDDL-----VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVS 269
Query: 215 ALLGGCKLHRNL----EIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
++L C ++L EI AV M++ N C+ L+++YA+
Sbjct: 270 SILPACAELKDLKSGKEIHGFAVRHGMVV---NLFVCSALVSLYAK 312
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 209/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M R + SW+ +IT ++ + + L +M N G ++ + +VLSAC HLGALDL
Sbjct: 192 MNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDL 251
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR +H ++++ ++V + ++L++MY KCGSL + + +F K+ +KN ++ +I GLA+
Sbjct: 252 GRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAM 311
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG+ E L +F M+ + +EP+ + ++ VL+AC+HAGLV+EG + F M + I P ++
Sbjct: 312 HGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQ 371
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL+ +AG +++ALELI+S +PN V+W +LL K+H NL+ IA +L L
Sbjct: 372 HYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL 431
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ + +L NMYA+ RW +V K R M G+ +R PG S +E++RK+++F + D
Sbjct: 432 DSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQR-PGFSLVEVKRKMHRFVSQDA 490
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S+ +Y L +++ QLK Y P+ +L
Sbjct: 491 GHPQSESVYEMLYQMEWQLKFEGYSPDTTQVL 522
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 9/221 (4%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ TM+ + ++ EAL + EM G+ PD T T+L ACA L A++ G ++H +
Sbjct: 97 FQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAH 156
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++++G + DV++ ++L+ MY KCG + VF ++ E+++ W+++I A G +
Sbjct: 157 ILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDC 216
Query: 127 LAMFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITPEVEHYG 182
L + M E +SVLSACTH G ++ GR L G ++ E
Sbjct: 217 LRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETS--- 273
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++++ K G L + L + + N + + ++ G +H
Sbjct: 274 -LIEMYLKCGSLYKGMCLFQKMA-KKNKLSYSVMISGLAMH 312
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
++L C+++ ++ H ++++G D + S LV A GS+D + +F ++
Sbjct: 36 SLLKKCSNMEEF---KQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMD 92
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
E F +N+++ G EAL + M V+P+ T+ ++L AC VEEG
Sbjct: 93 ELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEG 150
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 205/343 (59%), Gaps = 13/343 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-----------SGISPDQVTMATVLS 49
M RD+++W TMIT Y ++ +AL ++M+N + P+ +T+ T+L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+CA L AL G+EIH Y ++ DV +GSALVDMYAKCG L S VF ++ +KN+
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WN II +HG EA+ + M+ + V+PN VTFISV +AC+H+G+V+EG R F M
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN-AVIWGALLGGCKLHRNLEI 228
Y + P +HY C+VDLL +AG +++A +L+ N A W +LLG ++H NLEI
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
IA L+ LEPN + + LL N+Y+ W + T++R MKE G+ K PG SWIE
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKE-PGCSWIEHG 764
Query: 289 RKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+V++F A D SHP S+++ L L E+++ YVP+ +L
Sbjct: 765 DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVL 807
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 30/253 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+++W T+++ QN+Q EAL+ EM G+ PD+ T+++VL AC+HL L G+E
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 63 IHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y ++ G D + ++GSALVDMY C + VF + ++ + WN++I G + +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG-----------LVEEG--RRRFLS 167
EAL +F M + N T V+ AC +G +V+ G R RF+
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ 443
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
T ++D+ S+ G ++ A+ + + + + V W ++ G + E
Sbjct: 444 NT--------------LMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGYVFSEHHE 488
Query: 228 IAHIAVNELMILE 240
A + ++++ LE
Sbjct: 489 DALLLLHKMQNLE 501
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 20/263 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDLGRE 62
R I W MI YSQN+ +EAL F M+ S G+ + TMA V+ AC GA
Sbjct: 367 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA 426
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +V++ G D D ++ + L+DMY++ G +D ++ +F K+ +++L WN++I G
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 123 AHEALAMFDRMIYENVE-------------PNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
+AL + +M +N+E PN +T +++L +C + +G + +
Sbjct: 487 HEDALLLLHKM--QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYA 543
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++ +V +VD+ +K G L+ + ++ Q N + W ++ +H N + A
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEA 602
Query: 230 HIAVNELMI--LEPNNSGYCTLL 250
+ +M+ ++PN + ++
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVF 625
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ ++ REA+ + +M GI PD +L A A L ++LG++IH +V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 69 QIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G+ +D V + + LV++Y KCG VF ++ E+N WNS+I L AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
F M+ ENVEP+ T +SV++AC++ L M G + +V YG
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN-----------LPMPEGLMMGKQVHAYG 228
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG---ALDLG 60
R+ +SW ++I+ +++ AL+AF M + + P T+ +V++AC++L L +G
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y ++ G +++ +I + LV MY K G L S ++ ++L WN+++ L +
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL M+ E VEP+ T SVL AC+H ++ G+
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
>gi|224111954|ref|XP_002332852.1| predicted protein [Populus trichocarpa]
gi|222837177|gb|EEE75556.1| predicted protein [Populus trichocarpa]
Length = 331
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 207/330 (62%), Gaps = 12/330 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI+ Y++N + ++AL+ F++M+ +G+ DQV + L+ACA LG L +G
Sbjct: 1 MPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMG 60
Query: 61 REIHLYVMQ--IGFD--IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
IH Y+ +G + + V + +AL+ MYA CG +D + VF + E++ W S+I
Sbjct: 61 MWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITA 120
Query: 117 LAVHGFAHEALAMF---DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
A G+A L +F R+ P+G+TFI VL AC+HAGLV+EGR+ F M +
Sbjct: 121 FAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWG 180
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
I P +EHYGCMVDLLS+AG L++A ELI + +PN +WGALLGGC+ +RN E+A + V
Sbjct: 181 IKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASL-V 239
Query: 234 NELMILEPN---NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
++ ++ EP+ +GY +LL +YA +W +V +R M +G+ K+ G SW+++
Sbjct: 240 SQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGV-KKPAGQSWVQINEV 298
Query: 291 VYQFAASDKSHPASDEIYSSLSKLDEQLKL 320
V+ + DK+H + IY L K+ + K+
Sbjct: 299 VHDSVSVDKTHKNTSSIYEMLGKIHQASKV 328
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 196/329 (59%), Gaps = 11/329 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK----------NSGISPDQVTMATVLSA 50
MP RD +SW T++ Y + + A + F +M +G+ D T+ ++LSA
Sbjct: 176 MPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSA 235
Query: 51 CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
CA G L LG+ +H + + F + +AL+DMYAKCGSL+ +L +F + K++ W
Sbjct: 236 CAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSW 295
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170
N+II+GLA+HG +AL +F RM E P+ VTF+ VL ACTHAG V+EG F +M
Sbjct: 296 NAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMER 355
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
Y + PEVEHYGCMVDLL + G L++A L+ S +PNA+IWG LLG C++H +A
Sbjct: 356 DYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAE 415
Query: 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
+ L+ E ++SG ++L N+YA W IR+ MK I+K GSS IE++ +
Sbjct: 416 EVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSS-IEVDDE 474
Query: 291 VYQFAASDKSHPASDEIYSSLSKLDEQLK 319
V++F D+SHP SD IY ++ L + +
Sbjct: 475 VHEFTVFDRSHPKSDRIYKTIDGLGQHIN 503
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 14/236 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ + T+I + +N + A F EM++SG+ D T +L AC+ + + IH
Sbjct: 79 DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V ++GF +D+++ ++L+D Y K G L + +F ++ E++ WN+I++G G +
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMN 198
Query: 125 EALAMFDRMIYENV----------EPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYS 173
A +F++M NV + + T IS+LSAC +GL+ G+R S+ +
Sbjct: 199 AAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFK 258
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ V + ++D+ +K G LE+AL + + + V W A++ G +H + E A
Sbjct: 259 CSTPVSN--ALIDMYAKCGSLENALSIFH-GMVRKDVVSWNAIIQGLAMHGHGEKA 311
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 196/328 (59%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ +WT ++ Y+Q+ Q +A+ F +M+ G+ P++ T+A+ LS C+ + LD GR++
Sbjct: 596 RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL 655
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ G D+++ SALVDMYAKCG ++ + +VF L ++ WN+II G + HG
Sbjct: 656 HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQG 715
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL F+ M+ E P+ VTFI VLSAC+H GL+EEG++ F S++ Y ITP +EHY C
Sbjct: 716 GKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYAC 775
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L +AG + I K N +IW +LG CK+H N+E A +L LEP
Sbjct: 776 MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI 835
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL NM+A W +VT +R M G++K PG SW+E+ +V+ F + D SHP
Sbjct: 836 DSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKE-PGCSWVEVNGQVHVFLSHDGSHPK 894
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
EI+ L L ++L Y P + +L
Sbjct: 895 IREIHLKLQDLHQKLMSVGYTPNTDHVL 922
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 123/219 (56%), Gaps = 6/219 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++SWT +IT + A++ F EM+ G+ ++ T AT L AC+ L+ G
Sbjct: 189 IPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFG 248
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++G D+++GSALVD+YAKCG + + VF + ++N WN+++ G A
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A + L +F RM + + T +VL C ++G + G+ + + I E++
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQ---IVHSLAIRIGCELDE 365
Query: 181 Y--GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ C+VD+ SK GL DAL++ + P+ V W A++
Sbjct: 366 FISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAII 403
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 120/220 (54%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +++ + N+ L FN+M G +P+ T ++L +C+ L +DLG+++
Sbjct: 495 RDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 554
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ D + ++G+ALVDMYAK L+ + +F +L +++LF W I+ G A G
Sbjct: 555 HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 614
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ F +M E V+PN T S LS C+ ++ G R+ SM + ++
Sbjct: 615 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASA 673
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G +EDA E++ + V W ++ G H
Sbjct: 674 LVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQH 712
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 115/215 (53%), Gaps = 2/215 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW+ +ITC Q Q REA + F M++SG+ P+Q T+A+++SA LG L G IH
Sbjct: 395 DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIH 454
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V + GF+ D + +ALV MY K GS+ VF ++L WN+++ G +
Sbjct: 455 ACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCD 514
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
L +F++M+ E PN TFIS+L +C+ V+ G++ + S+ +
Sbjct: 515 TGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIV-KNSLDGNDFVGTAL 573
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
VD+ +K LEDA E I + + + W ++ G
Sbjct: 574 VDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAG 607
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 125/252 (49%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW ++ ++Q + L+ F M S I+ + T++TVL CA+ G L G
Sbjct: 290 MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG 349
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++IG ++D +I LVDMY+KCG +L VF ++ + ++ W++II L
Sbjct: 350 QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQK 409
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EA +F RM + V PN T S++SA T G + G + C Y +
Sbjct: 410 GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG-ESIHACVCKYGFEYDNTV 468
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V + K G ++D + ++ + + W ALL G + + N+++
Sbjct: 469 CNALVTMYMKIGSVQDGCRVFEATT-NRDLISWNALLSGFHDNETCDTGLRIFNQMLAEG 527
Query: 239 LEPNNSGYCTLL 250
PN + ++L
Sbjct: 528 FNPNMYTFISIL 539
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 18/181 (9%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L CA G L+ G+ IH V++ G + D ++ ++LV++YAKCGS + + VF ++ E++
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
+ W ++I G G+ A+ +F M E VE N T+ + L AC+ L
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMC----------L 243
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLE---DALELIRSSKF-----QPNAVIWGALLG 218
+ G + E G DL + L++ E++ + + + NAV W ALL
Sbjct: 244 DLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLN 303
Query: 219 G 219
G
Sbjct: 304 G 304
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 43/242 (17%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+RD +SW T+I YSQ+ Q +AL AF M + G PD+VT VLSAC+H+G ++ G++
Sbjct: 696 SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 755
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H + +Y + ++ YA +++ L G
Sbjct: 756 -HFNSLS-----KIYGITPTIEHYA------------------------CMVDILGRAGK 785
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE-HY 181
HE + + M + N + + +VL AC G +E G R + + + + PE++ +Y
Sbjct: 786 FHEVESFIEEM---KLTSNVLIWETVLGACKMHGNIEFGERAAMKL---FELEPEIDSNY 839
Query: 182 GCMVDLLSKAGLLED-----ALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ ++ + G+ +D AL R K +P W + G + + + +H + E+
Sbjct: 840 ILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCS-WVEVNGQVHVFLSHDGSHPKIREI 898
Query: 237 MI 238
+
Sbjct: 899 HL 900
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 196/328 (59%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ +WT ++ Y+Q+ Q +A+ F +M+ G+ P++ T+A+ LS C+ + LD GR++
Sbjct: 355 RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL 414
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ G D+++ SALVDMYAKCG ++ + +VF L ++ WN+II G + HG
Sbjct: 415 HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQG 474
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL F+ M+ E P+ VTFI VLSAC+H GL+EEG++ F S++ Y ITP +EHY C
Sbjct: 475 GKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYAC 534
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L +AG + I K N +IW +LG CK+H N+E A +L LEP
Sbjct: 535 MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI 594
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL NM+A W +VT +R M G++K PG SW+E+ +V+ F + D SHP
Sbjct: 595 DSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKE-PGCSWVEVNGQVHVFLSHDGSHPK 653
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
EI+ L L ++L Y P + +L
Sbjct: 654 IREIHLKLQDLHQKLMSVGYTPNTDHVL 681
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 3/223 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++SWT +IT + + + L FN+M G +P+ T ++L +C+ L +DLG
Sbjct: 252 IPERDVVSWTALITGFVA-EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ D + ++G+ALVDMYAK L+ + +F +L +++LF W I+ G A
Sbjct: 311 KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQD 370
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ F +M E V+PN T S LS C+ ++ G R+ SM + ++
Sbjct: 371 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFV 429
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G +EDA E++ + V W ++ G H
Sbjct: 430 ASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQH 471
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 3/184 (1%)
Query: 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
G P+ T ++L CA G L+ G+ IH V++ G + D ++ ++LV++YAKCGS + +
Sbjct: 186 GFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYA 245
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
VF ++ E+++ W ++I G G+ L +F++M+ E PN TFIS+L +C+
Sbjct: 246 CKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSL 304
Query: 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
V+ G++ + S+ +VD+ +K LEDA E I + + + W
Sbjct: 305 SDVDLGKQVHAQIV-KNSLDGNDFVGTALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTV 362
Query: 216 LLGG 219
++ G
Sbjct: 363 IVAG 366
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ W ++ + +EA+ F M+++ I +Q A+++SA A LG G
Sbjct: 50 MPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYG 109
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH V + GF+ D+ I +A V MY K S++ F + +NL N+++ G
Sbjct: 110 ESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDT 169
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ + +++ E EPN TFIS+L C G + EG + I P+
Sbjct: 170 ETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEG-KAIHGQVIKSGINPDSHL 228
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V++ +K G A ++ + + V W AL+ G
Sbjct: 229 WNSLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALITG 266
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 43/242 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +RD +SW T+I YSQ+ Q +AL AF M + G PD+VT VLSAC+H+G ++ G
Sbjct: 453 LVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEG 512
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H + +Y + ++ YA +++ L
Sbjct: 513 KK-HFNSLS-----KIYGITPTIEHYA------------------------CMVDILGRA 542
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE- 179
G HE + + M + N + + +VL AC G +E G R + + + + PE++
Sbjct: 543 GKFHEVESFIEEM---KLTSNVLIWETVLGACKMHGNIEFGERAAMKL---FELEPEIDS 596
Query: 180 HYGCMVDLLSKAGLLED-----ALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
+Y + ++ + G+ +D AL R K +P W + G + + + +H +
Sbjct: 597 NYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCS-WVEVNGQVHVFLSHDGSHPKIR 655
Query: 235 EL 236
E+
Sbjct: 656 EI 657
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 204/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP + +W +I+ Y QN + R AL F+EM+ + PD+VT+ L A A LGA+D
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G IH+Y+ + +++ ++ ++L+DMYAKCG+L++++ VF + K+++ W+++I LA+
Sbjct: 426 GHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAM 485
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G AL +F M+ ++PN VTF ++L AC HAGLV EG + F M Y I P+++
Sbjct: 486 YGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQ 545
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+ +AGLLE A I P A +WGALLG C H N+E+A +A L+ L
Sbjct: 546 HYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLEL 605
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G LL N+YA+ W +V+ +R M++ ++K P S I++ V++F D
Sbjct: 606 EPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKE-PWCSSIDVNGIVHEFLVGDN 664
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S +IYS L ++ E+ K Y P++ +L
Sbjct: 665 SHPFSQKIYSKLDEISEKFKPIGYKPDMSNLL 696
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 48/262 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW MI ++ +AL F EM+ + P+ +TM +VLSACA L+ G
Sbjct: 234 MPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG 293
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ GF + + +A++DMY KCG ++ + +F K+ EK++ W ++++G A
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL 353
Query: 121 GFAHEALAMFDRM--------------------------------IYENVEPNGVTFISV 148
G EA +FD M + ++ +P+ VT I
Sbjct: 354 GNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICA 413
Query: 149 LSACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
L A G ++ G ++ +++ C + + ++D+ +K G L A+E+
Sbjct: 414 LCASAQLGAIDFGHWIHVYIKKHDINLNCHLATS--------LLDMYAKCGNLNKAMEVF 465
Query: 202 RSSKFQPNAVIWGALLGGCKLH 223
+ + + + +W A++G ++
Sbjct: 466 HAVE-RKDVYVWSAMIGALAMY 486
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 11/235 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
+P ++ W T+I Y+ + ++ F M +S P++ T + A + L L L
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H V++ D++I ++L++ Y G+ D + VF + K++ WN++I A+
Sbjct: 192 GSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFAL 251
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SIT 175
G +AL +F M ++V+PN +T +SVLSAC +E GR C Y T
Sbjct: 252 GGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGR-----WICSYIENNGFT 306
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
+ M+D+ K G + DA +L + + V W +L G N + AH
Sbjct: 307 EHLILNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAKLGNYDEAH 360
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH ++++ D Y S L+ YA C L + VF ++ + NL+CWN++I G A
Sbjct: 89 KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148
Query: 119 VHGFAHEALAMFDRMIYENVE-PNGVTFISVLSACT-----HAGLVEEGRRRFLSMTC-- 170
++ +F M++ E PN TF + A + H G V G S++
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208
Query: 171 ----------GYSITPEVEH-------------YGCMVDLLSKAGLLEDALELIRS---S 204
G S P++ H + M++ + GL + AL L +
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMK 268
Query: 205 KFQPNAVIWGALLGGCKLHRNLEIA 229
+PN + ++L C +LE
Sbjct: 269 DVKPNVITMVSVLSACAKKIDLEFG 293
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT M+ Y QN EA+ F++M+ GI PD T+ +V+S+CA+L +L+ G
Sbjct: 336 MTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG 395
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H + G + + +ALV +Y KCGS++ S +F ++ K+ W +++ G A
Sbjct: 396 AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQF 455
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+E + +F+ M+ ++P+ VTFI VLSAC+ AGLVE+G + F SM + I P +H
Sbjct: 456 GKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDH 515
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DL S+AG +E+A I F P+A+ W LL C+ + N++I A LM L+
Sbjct: 516 YTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELD 575
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+ LL ++YA +W EV ++R M++ G+ K PG SWI+ + +V+ F+A DKS
Sbjct: 576 PHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKE-PGCSWIKYKNQVHVFSADDKS 634
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+P SD+IYS L KL+ ++ YVP++ ++L
Sbjct: 635 NPFSDQIYSELEKLNYKMIKEGYVPDMNSVL 665
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISWT+MIT ++QN R+A+D F EMK + DQ T +VL+AC + AL G
Sbjct: 235 MRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+++ + ++++ SALVDMY KC ++ + VF K+ KN+ W +++ G +
Sbjct: 295 KQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQN 354
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EA+ F M +EP+ T SV+S+C + +EEG +F + + +
Sbjct: 355 GYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG-AQFHARALTSGLISFITV 413
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V L K G +ED+ L F+ + V W AL+ G
Sbjct: 414 SNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSG 451
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 43/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSG-ISPDQVTMATVLSACAHLGALD 58
MP RD +SW ++I+ Y+ +++ A+N M KN G + +++T +T+L + G +
Sbjct: 101 MPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVK 160
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAK------------------------------ 88
LGR+IH +V++ GF V++GS LVDMY+K
Sbjct: 161 LGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLM 220
Query: 89 -CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147
CG ++ S +FF++RE++ W S+I G +G +A+ +F M EN++ + TF S
Sbjct: 221 RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGS 280
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----GCMVDLLSKAGLLEDALELIRS 203
VL+AC ++EG++ Y I + + +VD+ K ++ A E +
Sbjct: 281 VLTACGGVMALQEGKQ-----VHAYIIRTDYKDNIFVASALVDMYCKCKNIKSA-EAVFK 334
Query: 204 SKFQPNAVIWGALLGG 219
N V W A+L G
Sbjct: 335 KMTCKNVVSWTAMLVG 350
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 47/212 (22%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L C + +H ++++ + ++ + L+ YAK GS+ + VF ++ N
Sbjct: 15 LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRM--------------------IYENVEP------ 140
L+ WN+I+ + G E +FD M IY++V+
Sbjct: 75 LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134
Query: 141 -------NGVTFISVLSACTHAGLVEEGRR------RFLSMTCGYSITPEVEHYGCMVDL 187
N +TF ++L + G V+ GR+ +F M+ + +P +VD+
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSP-------LVDM 187
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
SK G++ A ++ + N V++ L+ G
Sbjct: 188 YSKMGMISCARKVFDELP-EKNVVMYNTLIMG 218
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 207/330 (62%), Gaps = 2/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW + + Y++ ++L F M ++G PD + + +L+A + LG +
Sbjct: 368 MPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQA 427
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V + GFD + +IG++L+++YAKC S+D + VF LR ++ W+SII H
Sbjct: 428 LCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFH 487
Query: 121 GFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL + +M + +V+PN VTF+S+LSAC+HAGL+EEG + F M Y + P +E
Sbjct: 488 GQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIE 547
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYG MVDLL + G L+ AL++I + Q +WGALLG C++H+N++I +A L +L
Sbjct: 548 HYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLL 607
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PN++GY TLL N+Y W + K+R +KE + K+ G S +E++ +V+ F ASD+
Sbjct: 608 DPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRL-KKIVGQSMVEIKNEVHSFIASDR 666
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEA 329
H SD+IY L KLD +++ Y P+L+
Sbjct: 667 FHGESDQIYEMLRKLDARMREEGYDPDLQT 696
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 142/256 (55%), Gaps = 11/256 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISW++M+ CY+ N AL+ FNEM + I ++VT+ + L ACA L+ G
Sbjct: 267 MPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEG 326
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH + GF++D+ + +AL+DMY KC S + ++ +F ++ +K++ W + G A
Sbjct: 327 KQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEI 386
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--RRRFLSMTCGYSITPEV 178
G AH++L +F M+ P+ + + +L+A + G+V++ F++ + G+ +
Sbjct: 387 GMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKS-GFDNNEFI 445
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVN 234
+++L +K +++A ++ + + + V W +++ H L+++H N
Sbjct: 446 G--ASLIELYAKCSSIDNANKVFKGLR-HTDVVTWSSIIAAYGFHGQGEEALKLSHQMSN 502
Query: 235 ELMILEPNNSGYCTLL 250
+ +PN+ + ++L
Sbjct: 503 HSDV-KPNDVTFVSIL 517
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 18/278 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLG 60
P D++ WT++IT Y QN AL F+ M +SPD VT+ + SACA L +LG
Sbjct: 166 PKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLG 225
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +V + GFD + + ++++++Y K GS+ + +F ++ K++ W+S++ A +
Sbjct: 226 RSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADN 285
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F+ MI + +E N VT IS L AC + +EEG ++ + Y ++
Sbjct: 286 GAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEG-KQIHKLAVNYGFELDITV 344
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ K E+A+EL + + V W L G + + +AH ++
Sbjct: 345 STALMDMYLKCFSPENAIELFNRMP-KKDVVSWAVLFSG---YAEIGMAHKSLGV----- 395
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278
+C +L N + KI A ELGI ++
Sbjct: 396 -----FCNMLSN--GTRPDAIALVKILAASSELGIVQQ 426
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS---PDQVTMATVLSACAHLGALD 58
P + + W ++ Y ++ E L F++M ++ PD T++ L +C+ L L+
Sbjct: 63 PCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLE 122
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG+ IH ++ + D D+++GSAL+++Y+KCG ++ ++ VF + + ++ W SII G
Sbjct: 123 LGKMIHGFLKK-KIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYE 181
Query: 119 VHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGR 162
+G ALA F RM+ E V P+ VT +S SAC GR
Sbjct: 182 QNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGR 226
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 108/223 (48%), Gaps = 16/223 (7%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H +++G +D ++ + L +YA+ SL + +F + K ++ WN+++ + G
Sbjct: 22 QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81
Query: 122 FAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY---SIT 175
E L++F +M + V P+ T L +C+ +E G+ M G+ I
Sbjct: 82 KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGK-----MIHGFLKKKID 136
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
++ +++L SK G + DA+++ +P+ V+W +++ G + + + E+A +
Sbjct: 137 SDMFVGSALIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQNGSPELALAFFSR 195
Query: 236 LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278
+++LE + TL+ + S A+++ + G KR
Sbjct: 196 MVVLEQVSPDPVTLV----SAASACAQLSDFNLGRSVHGFVKR 234
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SW ++ Y +N +AL F M + + + P+ T+++VL C++L AL
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G++IH + M++ ++ +G++LV MY KCG L + +F ++ +++ WN++I G A
Sbjct: 260 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ 319
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+RM E VEPN +TF++VL+AC H GL + G R F M Y I P V+
Sbjct: 320 HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 379
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL +AG LE A++LIRS F+P+ +G LL C++++NLE A +A +L+
Sbjct: 380 HYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 439
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P ++G L N+YA ++W +V+++R MK+ + K PG SWIE++ +++F ++D+
Sbjct: 440 DPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVK-TPGYSWIEIKGVMHEFRSNDR 498
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L +L E++K YVP+L+ +L
Sbjct: 499 LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVL 530
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD++SW TM++ S++ EA F M +NS V+ ++S A +
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNS------VSWNAMVSGFACSRDMS 159
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
E + G D + +A+V Y G++ +++ F + +NL WN+++ G
Sbjct: 160 AAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216
Query: 119 VHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITP 176
+ A +AL +F M+ E NV+PN T SVL C++ + G++ + C ++
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ--IHQWCMKLPLSR 274
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V + K G L A +L + V W A++ G H
Sbjct: 275 NLTVGTSLVSMYCKCGDLSSACKLF-GEMHTRDVVAWNAMISGYAQH 320
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 206/333 (61%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M RDI+SW MI YSQ+ +AL F ++ G PD++T+ LSAC+ +GAL+
Sbjct: 216 MCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALET 275
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH++V ++V + +AL+DMY+KCGSL+ ++LVF K++ WN++I G A+
Sbjct: 276 GRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAM 335
Query: 120 HGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG++ +AL +FD M ++P +TFI L AC HAGLV EG + F SM Y I P++
Sbjct: 336 HGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKI 395
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+V LL +AG L+ A E+I++ + ++V+W ++LG CKLH + L+
Sbjct: 396 EHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIG 455
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+NSG LL N+YA V + V K+R MKE GI K PG S IE++ KV++F A D
Sbjct: 456 QNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKE-PGISTIEIDNKVHEFRAGD 514
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ H S EIY+ L K+ E++K YVP +L
Sbjct: 515 REHLKSKEIYTMLRKMSERIKSHGYVPNTNTVL 547
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 129/251 (51%), Gaps = 38/251 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ +T I S N +A + ++ +S I+P++ T +++L +C+ G+ IH
Sbjct: 92 DLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCS----TKSGKLIH 147
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-----------DRSLL---------------- 97
+V++ G +D Y+ + LVD+YAK G + +RSL+
Sbjct: 148 THVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVE 207
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSAC 152
+F ++ E+++ WN +I+G + HGF +AL +F +++ + +P+ +T ++ LSAC
Sbjct: 208 AARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSAC 267
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ G +E GR + + I V+ ++D+ SK G LE+A+ L+ + + + V
Sbjct: 268 SQIGALETGRWIHVFVNSS-RIRLNVKVCTALIDMYSKCGSLEEAV-LVFNDTPRKDIVA 325
Query: 213 WGALLGGCKLH 223
W A++ G +H
Sbjct: 326 WNAMITGYAMH 336
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 68/242 (28%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YA G + SL +F + + +LF + + I +++G +A ++ +++ + PN TF
Sbjct: 72 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131
Query: 146 ISVLSAC---------TH-------------AGLVE---------EGRRRFLSM------ 168
S+L +C TH GLV+ ++ F M
Sbjct: 132 SSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLV 191
Query: 169 ------TCGYSITPEVE---------------HYGCMVDLLSKAGLLEDAL----ELIRS 203
TC Y+ VE + M+D S+ G DAL +L+
Sbjct: 192 SSTAMITC-YAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLAD 250
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIA---HIAVNELMILEPNNSGYCTLLLNMYAEVSRW 260
K +P+ + A L C LE H+ VN I N CT L++MY++
Sbjct: 251 GKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRL--NVKVCTALIDMYSKCGSL 308
Query: 261 AE 262
E
Sbjct: 309 EE 310
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 206/317 (64%), Gaps = 1/317 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++DI+SWT+MITC N EAL+ FN + + I PD +T+ +VL A A L +L G+E
Sbjct: 515 SKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKE 574
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++++ GF ++ I ++LVDMYA+CG+++ + +F +++++L W S+I +HG
Sbjct: 575 IHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGC 634
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+A+ +F +M ENV P+ +TF+++L AC+H+GLV EG++ F M Y + P EHY
Sbjct: 635 GKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYA 694
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
C+VDLL+++ LE+A +R+ +P+A +W ALLG C++H N ++ +A +L+ L
Sbjct: 695 CLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTE 754
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSG L+ N +A RW +V ++R MK ++K+ PG SWIE+E K++ F A DKSHP
Sbjct: 755 NSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKK-PGCSWIEVENKIHTFMARDKSHP 813
Query: 303 ASDEIYSSLSKLDEQLK 319
+ IY L++ + LK
Sbjct: 814 QCNNIYLKLAQFTKLLK 830
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 129/225 (57%), Gaps = 7/225 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ISWTT+I Y+QN+ +AL+ +++ + D + + ++L AC+ L + L
Sbjct: 413 MPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLI 472
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH YV++ G D+ I +A+V++Y + +D + VF + K++ W S+I +
Sbjct: 473 KEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHN 531
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G A EAL +F+ +I N+EP+ +T +SVL A +++G+ FL + G+ + +
Sbjct: 532 GLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFL-IRKGFFLEGLI 590
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +VD+ ++ G +E+A + K Q + ++W +++ +H
Sbjct: 591 AN--SLVDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMH 632
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 4/221 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R I +W MI ++ EA++ + EM+ G+S D T VL AC LG
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLG 167
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LREKNLFCWNSIIEGLA 118
EIH ++ G+ V++ +AL+ MYAKCG L + ++F + + + WNSII
Sbjct: 168 CEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHV 227
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G + EAL++F RM VE N TF+S L AC ++ GR + T +V
Sbjct: 228 GEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFT-DV 286
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + + G +EDA + +S F+ + V W LL G
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNTLLSG 326
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 129/248 (52%), Gaps = 13/248 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SW T+++ QN + +A++ F +M++SG PDQV++ +++A L G
Sbjct: 312 MLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAG 371
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H Y ++ G D +++IG++L+DMY KC + F + EK+L W +II G A +
Sbjct: 372 MEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQN 431
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT---PE 177
+AL + ++ E ++ + + S+L AC+ GL E + + GY + +
Sbjct: 432 ECHLDALNLLRKVQLEKMDVDPMMIGSILLACS--GLKSE---KLIKEIHGYVLKGGLAD 486
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ +V++ + L++ A + S + V W +++ C +H L I + + +
Sbjct: 487 ILIQNAIVNVYGELALVDYARHVFESIN-SKDIVSWTSMITCC-VHNGLAIEALELFNSL 544
Query: 238 I---LEPN 242
I +EP+
Sbjct: 545 IETNIEPD 552
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 79/151 (52%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SW ++I+ + + EAL F M+ G+ + T + L AC + +G
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++ DVY+ +AL+ MYA CG ++ + VF + K+ WN+++ G+ +
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+A+ F M +P+ V+ +++++A
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLL 97
P Q + L CA AL G+++H + ++ +D V++ + V MY KCGS ++
Sbjct: 44 PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF K+ E+ +F WN++I G EA+ ++ M V + TF VL AC G
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC---GA 160
Query: 158 VEEGRR----RFLSMTCGY 172
+E R +++ CGY
Sbjct: 161 FKERRLGCEIHGVAVKCGY 179
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT MI+ +QN E+L FN MK+ G P A + ACA L AL G
Sbjct: 387 MPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHG 446
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++GFD + G+AL+ MYAKCG ++ + +F + + WN++I L H
Sbjct: 447 RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQH 506
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F+ M+ E++ P+ +TF++VLS C+HAGLVEEG R F SM+ Y I P +H
Sbjct: 507 GHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDH 566
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y M+DLL +AG +A ++I + +P IW ALL GC++H N+++ A L L
Sbjct: 567 YARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELM 626
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL NMYA V RW +V K+R M++ G++K PG SWIE+E KV+ F D
Sbjct: 627 PQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKE-PGCSWIEVENKVHVFLVDDIV 685
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +Y+ L +L +++ Y+P+ + +L
Sbjct: 686 HPEVQAVYNYLEELGLKMRKLGYIPDTKFVL 716
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 41/288 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + +++W MI+ Y + F EAL+ F +M GI D+ T +VLSACA+ G G
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHG 310
Query: 61 REIHLYVMQI----GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI--- 113
+++H Y+++ D + + +AL +Y KCG +D + VF ++ K+L WN+I
Sbjct: 311 KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSG 370
Query: 114 ----------------------------IEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
I GLA +GF E+L +F+RM E EP F
Sbjct: 371 YVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAF 430
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+ AC + GR+ + + ++ + +K G++E A L +
Sbjct: 431 AGAIIACAWLAALMHGRQLHAQLV-RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMP 489
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
+ ++V W A++ H + A + + ELM+ E P+ + T+L
Sbjct: 490 YL-DSVSWNAMIAALGQHGHGAQA-LELFELMLKEDILPDRITFLTVL 535
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 108/260 (41%), Gaps = 45/260 (17%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG-RE 62
RD + + MIT YS N A++ F ++ +G PD T +VL A A + + ++
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQ 171
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKC--------------------------------- 89
IH V++ G + +AL+ ++ KC
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231
Query: 90 -------GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
G LD + + EK + WN++I G HGF EAL MF +M ++ +
Sbjct: 232 IAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDE 291
Query: 143 VTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
T+ SVLSAC +AG G++ L S+ + + L K G +++A +
Sbjct: 292 FTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQ 351
Query: 200 LIRSSKFQPNAVIWGALLGG 219
+ + + V W A+L G
Sbjct: 352 VFNQMPVK-DLVSWNAILSG 370
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 207/331 (62%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++I W MI+ Y++N REA+D F+EM N + PD +++ + +SACA +G+L+
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R ++ YV + + DV+I SAL+DM+AKCGS++ + LVF + ++++ W+++I G +H
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA++++ M V PN VTF+ +L AC H+G+V EG F ++ + I P+ +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG-WWFFNLMADHKINPQQQH 461
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL +AG L+ A E+I+ QP +WGALL CK HR++E+ A +L ++
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G+ L N+YA W V ++RV MKE G+ K G SW+E+ ++ F DKS
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV-GCSWVEVRGRLEAFRVGDKS 580
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI + ++ +LK +V +A L
Sbjct: 581 HPRYEEIERQVEWIESRLKEGGFVANKDASL 611
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 140/253 (55%), Gaps = 4/253 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I+SWT +++ Y+QN + EAL+ F+ M+ + PD V + +VL+A L L G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V+++G +I+ + +L MYAKCG + + ++F K++ NL WN++I G A +
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EA+ MF MI ++V P+ ++ S +SAC G +E+ R + +V
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY-EYVGRSDYRDDVFI 360
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE-IAHIAVNELMI 238
++D+ +K G +E A L+ + V+W A++ G LH R E I+ E
Sbjct: 361 SSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 239 LEPNNSGYCTLLL 251
+ PN+ + LL+
Sbjct: 420 VHPNDVTFLGLLM 432
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P I W +I YS+N F++AL ++ M+ + +SPD T +L AC+ L L +G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
R +H V ++GFD DV++ + L+ +YAKC L + VF L E+ + W +I+ A
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPE 177
+G EAL +F M +V+P+ V +SVL+A T +++GR S+ G I P+
Sbjct: 199 QNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + +K G + A L K PN ++W A++ G
Sbjct: 259 L--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
NSGI D A+++ + H L ++IH ++ +G ++ + L+ + G +
Sbjct: 15 NSGIHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDIT 70
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF L +F WN+II G + + +AL M+ M V P+ TF +L AC+
Sbjct: 71 FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130
Query: 154 HAGLVEEGR 162
++ GR
Sbjct: 131 GLSHLQMGR 139
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 216/334 (64%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW+ MI CY++N++ +A++ F +M ++ + P+ +T+ +VL+ACA + AL
Sbjct: 240 MPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALS 299
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGL 117
G+ +H Y+++ GFD V + +AL+ MY +CG L+ +F + +++ WNS+I G
Sbjct: 300 HGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGY 359
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+HGF EA+ +F+ MI+ P+ +TFISVL AC+HAGLV EG+ F SM Y +TP
Sbjct: 360 GMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMV-EYGVTPR 418
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
EHY CMVDLL +AG L++A+ELIRS +P+ +WGALLG C++H ++E A IA + L
Sbjct: 419 AEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLF 478
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
LEP N+G LL ++YA +V ++ ++E +EK G SWIE+++K++ F +
Sbjct: 479 DLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEK-VTGCSWIEVKKKLHSFTSV 537
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D +P +++ + + + Q+K YVP+ +L
Sbjct: 538 DNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVL 571
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 24/237 (10%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-----AHLGA 56
P ++I W ++ + EAL +M G+ D + L AC +H A
Sbjct: 135 PVKNIFVWNALLKALALADHGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPA 194
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
RE+H + ++ G+ + ++ + L+D YAK G + + VF + E+N+ W+++I
Sbjct: 195 SARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGC 254
Query: 117 LAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEG--------RRRFL 166
A + +A+ +F M+ + + PN +T +SVL+AC + G RR F
Sbjct: 255 YAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFD 314
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
S+ V ++ + + G LE + + + + V W +L+ G +H
Sbjct: 315 SL---------VSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMH 362
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F D ++ + L++ YA G+L + VF + KN+F WN++++ LA+ EALA
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163
Query: 132 RMIYENVEPNGVTFISVLSAC-----THAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
M V + ++ L AC +HA R ++ GY++ V ++
Sbjct: 164 DMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVA--TTLI 221
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
D +K G++ A E + ++ + N V W A++G
Sbjct: 222 DCYAKLGIVRYA-ESVFAAMPERNVVSWSAMIG 253
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SW ++ Y +N +AL F M + + + P+ T+++VL C++L AL
Sbjct: 249 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 308
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G++IH + M++ ++ +G++LV MY KCG L + +F ++ +++ WN++I G A
Sbjct: 309 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ 368
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+RM E VEPN +TF++VL+AC H GL + G R F M Y I P V+
Sbjct: 369 HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 428
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL +AG LE A++LIRS F+P+ +G LL C++++NLE A +A +L+
Sbjct: 429 HYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 488
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P ++G L N+YA ++W +V+++R MK+ + K PG SWIE++ +++F ++D+
Sbjct: 489 DPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVK-TPGYSWIEIKGVMHEFRSNDR 547
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L +L E++K YVP+L+ +L
Sbjct: 548 LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVL 579
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD++SW TM++ S++ EA F M +NS V+ ++S A +
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNS------VSWNAMVSGFACSRDMS 208
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
E + G D + +A+V Y G++ +++ F + +NL WN+++ G
Sbjct: 209 AAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 265
Query: 119 VHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITP 176
+ A +AL +F M+ E NV+PN T SVL C++ + G++ + C ++
Sbjct: 266 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ--IHQWCMKLPLSR 323
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V + K G L A +L + V W A++ G H
Sbjct: 324 NLTVGTSLVSMYCKCGDLSSACKLF-GEMHTRDVVAWNAMISGYAQH 369
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 214/366 (58%), Gaps = 36/366 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFR-----------------------------------EA 25
MP RD++SW ++T Y +NK++ EA
Sbjct: 240 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 299
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
++ F +M+ G P+++T++++L AC+ L +G+EIH YV + D+ +AL+ M
Sbjct: 300 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 359
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YAKCG L+ S VF +R K++ WN++I A+HG EAL +FD+M+ V+PN VTF
Sbjct: 360 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTF 419
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
VLS C+H+ LVEEG + F SM + + P+ HY C+VD+ S+AG L +A + I+
Sbjct: 420 TGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP 479
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
+P A WGALL C++++N+E+A I+ +L +EPNN G L N+ W+E ++
Sbjct: 480 MEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQ 539
Query: 266 IRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
+R+ MKE GI K PG SW+++ KV+ F DKS+ SD+IY+ L +L E++K+A Y P
Sbjct: 540 VRILMKERGITK-TPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKP 598
Query: 326 ELEAML 331
+ + +L
Sbjct: 599 DTDYVL 604
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + +T+I+ + + EA+ ++ ++ GI PD ACA G
Sbjct: 38 IPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRV 97
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H + G DV++G+AL+ Y KC ++ + VF L +++ W S+
Sbjct: 98 KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 157
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF + + +F M + V+PN +T S+L AC ++ G+
Sbjct: 158 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGK 199
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 50/226 (22%)
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+I ++G L+ + G +R+ +F + + + +++I L HG ++EA+ ++
Sbjct: 9 NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 68
Query: 133 MIYENVEPNGVTFISVLSACTHAG-----------------------------------L 157
+ ++P+ F++ AC +G
Sbjct: 69 LQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC 128
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWG 214
VE RR F + + +V + + K G +++ R S +PN +
Sbjct: 129 VEGARRVFDDL-----VVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVS 183
Query: 215 ALLGGCKLHRNL----EIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
++L C ++L EI AV M++ N C+ L+++YA+
Sbjct: 184 SILPACAELKDLKSGKEIHGFAVRHGMVV---NLFVCSALVSLYAK 226
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D ++W+ MI Y++ + EA+ F EM+ + + PD++TM ++LSAC LGAL+LG
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ I Y+ + V + +AL+DM+AKCG + ++L +F + EK + W S+I G+A+H
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F+ M V P+ V FI +LSAC+H+GLVE GR F SM Y + P++EH
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEH 373
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+ + GL+++ALE +R+ +PN VI L+ C+ H ++ LM E
Sbjct: 374 YGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHE 433
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + LL N+YA+ W + TKIR M+ G+ K+ PGS+ IE++ ++Y+F A DKS
Sbjct: 434 PLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGM-KKVPGSTMIEIDNEIYEFVAGDKS 492
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H EIY + ++ ++K + Y P +L
Sbjct: 493 HKQHKEIYEMVDEMGREMKKSGYRPSTSEVL 523
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%)
Query: 5 DIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
D + T+I Y+Q ++ AL + M + I P++ T VL ACA L L+LG+ +
Sbjct: 95 DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H V++ GFD D+++ + +V MY+ C G ++ + VF ++ + + W+++I G A G
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEH 180
+ EA+A+F M V P+ +T +S+LSACT G +E G+ ++ + I VE
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIER---HEIHKPVEV 271
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G + AL+L R+ + V W +++ G +H
Sbjct: 272 SNALIDMFAKCGDISKALKLFRAMN-EKTIVSWTSVIVGMAMH 313
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 196/320 (61%), Gaps = 1/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +SWT +IT + Q+KQ +AL+ F +M G P+ +T+ VLSACA +GALDLG
Sbjct: 211 MPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + ++ + +AL+DMYAK GS+ + VF +++ K+ F W ++I V
Sbjct: 271 RAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQ 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F M+ + PN VTF+SVLSAC+HAGL++EGR F M Y I P +EH
Sbjct: 331 GNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEH 390
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + GLLE+A LI +P+ VIW +LL C H N +A IA E++ E
Sbjct: 391 YGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKRE 450
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL NMYA +RW E +R M I K+ PG SWIE++ V++F DK+
Sbjct: 451 PGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKK-PGCSWIEVDGVVHEFLVEDKT 509
Query: 301 HPASDEIYSSLSKLDEQLKL 320
H A EIY +L + LK+
Sbjct: 510 HDARREIYVTLEIMARHLKM 529
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 41/260 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P DIIS+T++++ + + +A+ F+ SG PD LSA LG +G
Sbjct: 79 IPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG------------------------------ 90
+H + + G D ++ + +ALVDMY +CG
Sbjct: 139 SVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKC 198
Query: 91 -SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+D +L F+++ K+ W ++I G +AL +F +M+ E PN +T + VL
Sbjct: 199 VGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVL 258
Query: 150 SACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
SAC G ++ GR GY + T + ++D+ +K+G + A + +
Sbjct: 259 SACADIGALDLGR-----AIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQ 313
Query: 206 FQPNAVIWGALLGGCKLHRN 225
+ +A W ++ + N
Sbjct: 314 MK-DAFTWTTMISSFTVQGN 332
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 212/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SW ++ Y +N +AL F M + + + P+ T+++VL C++L AL
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G++IH + M++ ++ +G++LV MY KCG L + +F ++ +++ WN++I G A
Sbjct: 260 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ 319
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+RM E VEPN +TF++VL+AC H GL + G R F M Y I P V+
Sbjct: 320 HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 379
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL +AG LE A++LIRS F+P+ +G LL C++++NLE A +A +L+
Sbjct: 380 HYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 439
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P ++G L N+YA ++W +V+++R MK+ + K PG SWIE++ +++F ++D+
Sbjct: 440 DPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVK-TPGYSWIEIKGVMHEFRSNDR 498
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L +L E++K YVP+L+ +L
Sbjct: 499 LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVL 530
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP RD++SW TM++ S++ EA F M +NS V+ ++S A +
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNS------VSWNAMVSGFACSRDMS 159
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
E + G D + +A+V Y G++ +++ F + +NL WN+++ G
Sbjct: 160 AAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216
Query: 119 VHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITP 176
+ A +AL +F M+ E NV+PN T SVL C++ + G++ + C ++
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ--IHQWCMKLPLSR 274
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V + K G L A +L + V W A++ G H
Sbjct: 275 NLTVGTSLVSMYCKCGDLSSACKLF-GEMHTRDVVAWNAMISGYAQH 320
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 208/309 (67%), Gaps = 3/309 (0%)
Query: 1 MPARD--IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
M RD I SWT +++ Y++ + +AL+ F M+ GI PD++++ +VL CA LGAL+
Sbjct: 223 MTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALE 282
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG+ IH+Y + GF ++ + +AL++MYAKCGS+D+ +F +++E+++ W+++I GLA
Sbjct: 283 LGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLA 342
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG A EA+ +F M +EP+ +TF+ +L+AC HAGL+ EG R F SM Y+I P V
Sbjct: 343 NHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGV 402
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+V+LL +G L+ ALEL++ +P++ IWG+LL C+ H NL+IA IA+ L+
Sbjct: 403 EHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLE 462
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP ++G LL N+YA++ +W V+++R M+ + K+ PG S IE++ V +FA+ D
Sbjct: 463 LEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM-KKTPGCSSIEVDNMVQEFASGD 521
Query: 299 KSHPASDEI 307
S P S I
Sbjct: 522 DSKPFSKAI 530
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEM-----KNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ MI Y NK + A+ + +M + I PD+ T V+ +CA L DLG+++
Sbjct: 125 YNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 184
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN--LFCWNSIIEGLAVHG 121
H +V + G + + ++LV+MY KC SLD + VF ++ E++ +F W +I+ G A G
Sbjct: 185 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIG 244
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+AL F RM +EP+ ++ +SVL C G +E G+
Sbjct: 245 CYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGK 285
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 204/330 (61%), Gaps = 2/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW + + Y++ ++L F M + G PD + + +L+A + LG +
Sbjct: 369 MPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQA 428
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V + GFD + +IG++L+++YAKC S+D + VF +R K++ W+SII H
Sbjct: 429 LCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFH 488
Query: 121 GFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL +F +M + +V+PN VTF+S+LSAC+HAGL+EEG + F M Y + P E
Sbjct: 489 GQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTE 548
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYG MVDLL + G L+ AL++I Q +WGALLG C++H+N++I +A L +L
Sbjct: 549 HYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLL 608
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PN++GY TLL N+Y W + K+R +KE K+ G S +E++ +V+ F ASD+
Sbjct: 609 DPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRF-KKIVGQSMVEIKNEVHSFIASDR 667
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEA 329
H SD+IY L KLD ++K Y P ++
Sbjct: 668 FHGESDQIYGMLRKLDARMKEEGYDPPVQT 697
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 126/225 (56%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISW++M+ CY+ N AL+ FNEM + I ++VT+ + L ACA L+ G
Sbjct: 268 MPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEG 327
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + GF++D+ + +AL+DMY KC S ++ +F ++ +K++ W + G A
Sbjct: 328 KHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEI 387
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--RRRFLSMTCGYSITPEV 178
G AH++L +F M+ P+ + + +L+A + G+V++ F+S + G+ +
Sbjct: 388 GMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKS-GFDNNEFI 446
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+++L +K +++A ++ + + + + V W +++ H
Sbjct: 447 G--ASLIELYAKCSSIDNANKVFKGMR-RKDVVTWSSIIAAYGFH 488
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 140/278 (50%), Gaps = 18/278 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLG 60
P +D++ WT++IT Y QN AL F+ M +SPD VT+ + SACA L +LG
Sbjct: 167 PKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLG 226
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +V + GFD + + ++++++Y K GS+ + +F ++ K++ W+S++ A +
Sbjct: 227 RSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADN 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F+ MI + +E N VT IS L AC + +EEG + + Y ++
Sbjct: 287 GAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEG-KHIHKLAVNYGFELDITV 345
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ K ++A++L + + V W L G + + +AH ++
Sbjct: 346 STALMDMYMKCFSPKNAIDLFNRMP-KKDVVSWAVLFSG---YAEIGMAHKSLGV----- 396
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278
+C +L Y + KI A ELGI ++
Sbjct: 397 -----FCNML--SYGTRPDAIALVKILAASSELGIVQQ 427
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 22/229 (9%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS---PDQVTMATVLSACAHLGALD 58
P + + W ++ Y ++ E L F++M I+ PD T++ L +C+ L L+
Sbjct: 63 PCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLE 122
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG+ IH ++ + D D+++GSAL+++Y+KCG ++ ++ VF + ++++ W SII G
Sbjct: 123 LGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYE 182
Query: 119 VHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEG--------RRRFLSMT 169
+G ALA F RM+ E V P+ VT +S SAC G RR F +
Sbjct: 183 QNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKL 242
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
C + +++L K G + A L R ++ + + W +++
Sbjct: 243 CLAN---------SILNLYGKTGSIRSAANLFREMPYK-DIISWSSMVA 281
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 107/224 (47%), Gaps = 17/224 (7%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++H +++G D ++ + L +YA+ SL + +F + K ++ WN+++ + G
Sbjct: 22 QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81
Query: 122 FAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
E L++F +M + + P+ T L +C+ +E G+ M G+ ++
Sbjct: 82 KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGK-----MIHGFLKKKKI 136
Query: 179 EH----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
++ +++L SK G + DA+++ Q + V+W +++ G + + + E+A +
Sbjct: 137 DNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQ-DVVLWTSIITGYEQNGSPELALAFFS 195
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278
+++LE + TL+ + S A+++ + G KR
Sbjct: 196 RMVVLEQVSPDPVTLV----SAASACAQLSDFNLGRSVHGFVKR 235
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 191/294 (64%), Gaps = 1/294 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW+ MI+ Y++N Q E L+ FN+M+ G+SPD++TM +V+SACA++G+LD
Sbjct: 186 MAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKA 245
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V GF + I +AL+DM++KCGSL +L +F + KN+ W S+I A+H
Sbjct: 246 RWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMH 305
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F +M E VEPNGVTF+ +L AC HAGLV EGR F M Y I P+ EH
Sbjct: 306 GDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEH 365
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL+ +A L+++A++LI S +PN IWG+LL C +H ++E+ A +++ L+
Sbjct: 366 YGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELD 425
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
PN+ G LL N++A+ W K+RV MK G+ K G SW+E+ V+ F
Sbjct: 426 PNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKE-TGYSWLELNCTVHGF 478
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 35/283 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W M+ Y + +RE L N+MK S + PDQV +ATVLS C H L G
Sbjct: 54 MPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSG 113
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
+ IH Y+ +D + SAL++MYA C
Sbjct: 114 KTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKN 173
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G ++ + +F + EK++ W+++I A + E L +F++M V P+ +T +SV+
Sbjct: 174 GKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVI 233
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC + G +++ R S+ + + ++D+ SK G L AL + + + N
Sbjct: 234 SACANIGSLDKA-RWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMP-RKN 291
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLL 250
+ W +++ +H + A ++ +EPN + LL
Sbjct: 292 VITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLL 334
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
D R H +++G D D ++G+ALV YA C + + VF + E++L W +++
Sbjct: 10 DTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSY 69
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
E L + ++M V P+ V +VLS C H + G+
Sbjct: 70 FNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGK 114
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 208/327 (63%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+TMI Y+QN + E+L+ F MK + P++VT+ V+SACA LG+ +L
Sbjct: 311 MSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELV 370
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I Y + Y+GSAL+DMY +CG + R+ VF ++ +K + WNS+I GLA++
Sbjct: 371 EQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMN 430
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A++++++M V+PN +TF+++L+ACTHAGLV++G F M + ++P+VEH
Sbjct: 431 GFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEH 490
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A +L+ +E
Sbjct: 491 CACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME 550
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NS LL N+YA+ W + +IR M+ ++K SWI+++ +V++F D
Sbjct: 551 PDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQK-LSAYSWIKLDGEVHKFLVQDTY 609
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIY + L L A P+L
Sbjct: 610 HPRSAEIYDVIHGLGLLLDRADSDPDL 636
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 34/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R SW +MI CY+ +FREAL F+ M + G P+ +T+ +V S CA G LD G
Sbjct: 211 MERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + + +V + +AL++MY KC ++D + F ++ ++++ W+++I G A +
Sbjct: 271 KRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQN 329
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG---LVEE----GRRRFLSMT---- 169
G E+L +F+RM + PN VT + V+SAC G LVE+ + L +T
Sbjct: 330 GRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLG 389
Query: 170 ---------CGY-----SITPEVEHYGC-----MVDLLSKAGLLEDALEL---IRSSKFQ 207
CG+ S+ +E G M+ L+ G EDA+ L + + Q
Sbjct: 390 SALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQ 449
Query: 208 PNAVIWGALLGGC 220
PN + + ALL C
Sbjct: 450 PNEITFVALLAAC 462
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 36/242 (14%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+T ++ S+ + L F+ M G + V +CA + GR++H + +
Sbjct: 88 STFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALV 147
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL----------------------REKNL 107
G DV++ +ALVD YAK G ++ ++ VF ++ + + L
Sbjct: 148 RGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRL 207
Query: 108 F---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F WNS+I A G EAL +FDRM+ E PN +T SV S C +G +
Sbjct: 208 FDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDL 267
Query: 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA-LELIRSSKFQPNAVIWGALL 217
+ G+R + G V + ++++ K ++DA E R S Q + V W ++
Sbjct: 268 DTGKR--VRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMS--QRDVVAWSTMI 323
Query: 218 GG 219
G
Sbjct: 324 AG 325
>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP++++++W T+I +QN E LD +N MK +G PD++T +V+S+C+ L L G
Sbjct: 245 MPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQG 304
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH V++ G + V + S+L+ MY++CG L+ SL VF + ++ CW+S+I H
Sbjct: 305 QQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFH 364
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F++M E +E N VTF+S+L AC+H GL E+G + F M Y + P +EH
Sbjct: 365 GRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEH 424
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G +E+A LIRS + + + W LL CK+H+ E+A E+ L+
Sbjct: 425 YTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLD 484
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + LL N++A RW +V+ +R AM++ ++K PG SW+E++ +++QF DKS
Sbjct: 485 PRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKE-PGISWLEVKNQIHQFCMGDKS 543
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S EI S L +L ++K YVP+++++L
Sbjct: 544 HPKSVEIASYLRELTSEMKKRGYVPDIDSVL 574
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 129/253 (50%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ +W M+ Q + E L F+ M G PD+ + +VL CA L AL G
Sbjct: 144 MPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAG 203
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H YV + GF+ ++ + S+L MY KCGSL + + +N+ WN++I G A +
Sbjct: 204 RQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQN 263
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPEVE 179
G+ E L ++ M P+ +TF+SV+S+C+ + +G++ + G S+ V
Sbjct: 264 GYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV- 322
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE-IAHIAVNELM 237
++ + S+ G LE +L++ + + V W +++ H R +E I E
Sbjct: 323 -ISSLISMYSRCGCLEYSLKVFLECE-NGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQE 380
Query: 238 ILEPNNSGYCTLL 250
LE N+ + +LL
Sbjct: 381 KLEANDVTFLSLL 393
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 39/242 (16%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
T T ++A D F+ S I + + +L +C +L LG+++H ++
Sbjct: 25 TAEFTNLCSKGHLKQAFDRFS----SHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIIT 80
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVF------------------FK---------- 101
G D +I + L+++Y+KCG LD ++ +F F+
Sbjct: 81 SGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKM 140
Query: 102 ---LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
+ E+N+ WN+++ GL F E L +F RM P+ SVL C +
Sbjct: 141 FDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRAL 200
Query: 159 EEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
GR+ CG+ V + + K G L + LIR+ Q N V W L+
Sbjct: 201 VAGRQVHGYVRKCGFEFNLVV--VSSLAHMYMKCGSLGEGERLIRAMPSQ-NVVAWNTLI 257
Query: 218 GG 219
G
Sbjct: 258 AG 259
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 208/327 (63%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+TMI Y+QN + E+L+ F MK + P++VT+ V+SACA LG+ +L
Sbjct: 262 MSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELV 321
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+I Y + Y+GSAL+DMY +CG + R+ VF ++ +K + WNS+I GLA++
Sbjct: 322 EQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMN 381
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA +A++++++M V+PN +TF+++L+ACTHAGLV++G F M + ++P+VEH
Sbjct: 382 GFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEH 441
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
C+VDLL K+G L +A + I + +PNAVIW LL C+ H ++E+A +A +L+ +E
Sbjct: 442 CACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME 501
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+NS LL N+YA+ W + +IR M+ ++K SWI+++ +V++F D
Sbjct: 502 PDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQK-LSAYSWIKLDGEVHKFLVQDTY 560
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
HP S EIY + L L A P+L
Sbjct: 561 HPRSAEIYDVIHGLGLLLDRADSDPDL 587
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 34/253 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R SW +MI CY+ +FREAL F+ M + G P+ +T+ +V S CA G LD G
Sbjct: 162 MERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTG 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + + + +V + +AL++MY KC ++D + F ++ ++++ W+++I G A +
Sbjct: 222 KRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQN 280
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG---LVEE----GRRRFLSMT---- 169
G E+L +F+RM + PN VT + V+SAC G LVE+ + L +T
Sbjct: 281 GRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLG 340
Query: 170 ---------CGY-----SITPEVEHYGC-----MVDLLSKAGLLEDALEL---IRSSKFQ 207
CG+ S+ +E G M+ L+ G EDA+ L + + Q
Sbjct: 341 SALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQ 400
Query: 208 PNAVIWGALLGGC 220
PN + + ALL C
Sbjct: 401 PNEITFVALLAAC 413
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
+T ++ S+ + L F+ M G + V +CA + GR++H + +
Sbjct: 39 STFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALV 98
Query: 70 IGFDIDVYIGSALVDMYA-------------------------------KCGSLDRSLLV 98
G DV++ +ALVD YA K G +D++ +
Sbjct: 99 RGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRL 158
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F + + WNS+I A G EALA+FDRM+ E PN +T SV S C +G +
Sbjct: 159 FDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDL 218
Query: 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA-LELIRSSKFQPNAVIWGALL 217
+ G+R + G V + ++++ K ++DA E R S Q + V W ++
Sbjct: 219 DTGKR--VRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMS--QRDVVAWSTMI 274
Query: 218 GG 219
G
Sbjct: 275 AG 276
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 195/319 (61%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R +++WT +IT + Q +Q AL+ F M G P VT+ VLSACA +GALDLG
Sbjct: 205 VPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLG 264
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + +++ + +AL+DMYAK G ++ + VF +++ K+ F W ++I V
Sbjct: 265 RVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQ 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ V PN VTF+SVLSAC+H+GL+EEG F M Y I P +EH
Sbjct: 325 GDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEH 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL + GLLE+A LI +P+ VIW +LL C + N +A IA E++ E
Sbjct: 385 YGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKRE 444
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL NMYA ++W E ++R M L I K+ PG SWIE++ V++F DK+
Sbjct: 445 PGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKK-PGCSWIEIDGAVHEFLVEDKT 503
Query: 301 HPASDEIYSSLSKLDEQLK 319
H A EIY +L + QLK
Sbjct: 504 HDARREIYETLEYMSRQLK 522
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 35/255 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D+IS+T++++ + Q REA+ F + +G PD + LSA + G +G
Sbjct: 73 IPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVG 132
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + ++G D +V +G+AL+DMY++CG + ++ VF ++ K+ W S++ G
Sbjct: 133 RAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKC 192
Query: 121 GFAHEALAMFD-------------------------------RMIYENVEPNGVTFISVL 149
AL+ FD RM+ E P VT + VL
Sbjct: 193 AGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVL 252
Query: 150 SACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
SAC G ++ GR C S+ V + ++D+ +K+G +E A + + +
Sbjct: 253 SACADIGALDLGRVIHGYGSKCNASLNIIVSN--ALMDMYAKSGHIEMAFSVFQEVQ-SK 309
Query: 209 NAVIWGALLGGCKLH 223
++ W ++ C +
Sbjct: 310 DSFTWTTMISCCTVQ 324
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YA G + + +F ++ +L + S++ EA+++F R++ P+G
Sbjct: 57 YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+ LSA + AG G R + + EV ++D+ S+ G E A+++
Sbjct: 117 VGALSASSGAGDQVVG-RAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMS 175
Query: 206 FQPNAVIWGALLGG 219
+ + V WG++L G
Sbjct: 176 LK-DEVTWGSMLHG 188
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 202/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SWT+++T YS N + EA+ F +M+ SG+ PDQ+ +A+VLSACA L +D G
Sbjct: 102 MVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFG 161
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH +++ G + + + ++LV MYAKCGS+ + F + +++ W ++I G A +
Sbjct: 162 QQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQN 221
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +L +D+MI +P+ +TFI +L AC+H GL+ GR F +M Y I P EH
Sbjct: 222 GRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH 281
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLL ++G L +A L+ P+AV+W ALL C++H+ LE+ +A L LE
Sbjct: 282 YACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELE 341
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NS +L NMY+ +W + +IR M+ GI K PG SWIE KV F + D++
Sbjct: 342 PMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKE-PGYSWIETNSKVSTFMSEDRN 400
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EIYS + ++ +K A YVP++ L
Sbjct: 401 HPLRNEIYSKIDEIIMLIKEAGYVPDMSFAL 431
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 118/220 (53%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SW ++I + +AL F +M++ + D+ T+ +VL++ A + +
Sbjct: 1 MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++ GF+ + +AL+DMYAK G LD +++VF K+ +K++ W S++ G + +
Sbjct: 61 ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
G EA+ +F +M V P+ + SVLSAC +++ G++ ++ G + V+
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V + +K G + DA + + + + W AL+ G
Sbjct: 181 N--SLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVG 217
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 214/332 (64%), Gaps = 7/332 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++++W +MI Y+QN Q A++ F EM + ++PD+VTM +V+SAC HLGAL+L
Sbjct: 195 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 254
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G + ++ + + + +A++ MY++CGS++ + VF ++ +++ +N++I G A
Sbjct: 255 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 314
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ + M +EP+ VTFI VL+AC+HAGL+EEGR+ F S+ P ++
Sbjct: 315 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAID 369
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL + G LEDA + +P+A ++G+LL ++H+ +E+ +A N+L L
Sbjct: 370 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 429
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YA RW +V +IR AMK+ G+ K+ G SW+E K+++F +D+
Sbjct: 430 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV-KKTTGWSWVEYGGKLHKFIVADR 488
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SH SD+IY L +L ++++ A Y+ + +L
Sbjct: 489 SHERSDDIYQLLIELRKKMREAGYIADKSCVL 520
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 13/226 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++I+WT M+T Y++ K A F+ M + V+ +LS A G +
Sbjct: 100 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAE-- 153
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ L+ +G + +A++ Y + G LD + +F + +N+ WNS+I G A +
Sbjct: 154 EALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQN 213
Query: 121 GFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPE 177
G + A+ +F MI + + P+ VT +SV+SAC H G +E G RFL+ I
Sbjct: 214 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN---QIKLS 270
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + M+ + S+ G +EDA + + + + V + L+ G H
Sbjct: 271 ISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAH 315
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 31/224 (13%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
M+ YS + + + + +M+ G+ PD ++ + G +G H +V+++G
Sbjct: 1 MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSA---GTGGIG--FHAHVLKLG 55
Query: 72 FDIDVYIGSALVDMYA--------------KCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
D ++ +A++DMYA K S ++ +F + E+N+ W +++ G
Sbjct: 56 HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY--SIT 175
A A FD M +V V++ ++LS GL EE R F M Y S+T
Sbjct: 116 AKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVT 171
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+ + G L+ A +L + + N V W +++ G
Sbjct: 172 -----WNAMISAYMRVGDLDSARKLFNTMPGR-NVVTWNSMIAG 209
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +R I+SW MI ++QN + EAL+ F++M+ + PD T +V++A A L
Sbjct: 398 LQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA 457
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH VM+ D +V++ +ALVDMYAKCG++ + L+F + E+++ WN++I+G H
Sbjct: 458 KWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +F+ M + PNGVTF+SV+SAC+H+GLVE G + F M YSI P ++H
Sbjct: 518 GIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDH 577
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AG L +A + I +P ++GA+LG C++H+N+ A L L
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELN 637
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + GY LL N+Y S W +V ++RV+M G+ K PG S +E++ +V+ F + +
Sbjct: 638 PEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK-TPGCSMVEIKNEVHSFFSGSTA 696
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP+S +IY+ L KL Q+K A YVP+ +L
Sbjct: 697 HPSSKKIYAFLEKLICQIKEAGYVPDTNLIL 727
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 99/162 (61%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T++ YSQN R AL+ N M + P +T+ +VL A + L + +G
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y M+ GFD V I +ALVDMYAKCGSL + L+F + E+N+ WNS+I+ +
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN 315
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EA+ +F +M+ E V+P V+ + L AC G +E GR
Sbjct: 316 ENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +MI Y QN+ +EA+ F +M + G+ P V++ L ACA LG L+ G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++ D +V + ++L+ MY KC +D + +F KL+ + + WN++I G A +
Sbjct: 357 RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQN 416
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G EAL F +M V+P+ T++SV++A + + + C + V
Sbjct: 417 GRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC---LDKNV 473
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A LI + + W A++ G H
Sbjct: 474 FVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 118/230 (51%), Gaps = 4/230 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ +++ +AL F M++ + P +L C L +G+EIH ++
Sbjct: 103 YYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +D++ + L +MYAKC + + VF ++ E++L WN+I+ G + +G A AL
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
M + M EN++P+ +T +SVL A + L+ G+ +M G+ + +VD+
Sbjct: 223 MVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIA--TALVDM 280
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+K G L+ A L+ + N V W +++ + N + A + +++
Sbjct: 281 YAKCGSLKTA-RLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKML 329
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 208/326 (63%), Gaps = 2/326 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++W MIT Y+QN EA+ F+ M+ +G+ PD++T+ VLS+CA +GAL+LG E+
Sbjct: 250 KDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVEL 309
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
Y + G +VY+G+ALVDMYAKCG L+++ VF K+ KN WN++I GLA +G
Sbjct: 310 DGYALHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGKMPFKNEASWNALICGLAFNGRG 369
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
++A+ F+ M E ++P+ +TFI VLSAC HAGL+E GRR F S+T + I P++EHY
Sbjct: 370 YDAIQQFELMRNEKGLQPDDITFIGVLSACVHAGLLEYGRRLFSSLTPVFKIIPKIEHYS 429
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
C+VDLL++AG LE A + I + +AV+ GALL C+ +N E+ +N +M LEP
Sbjct: 430 CIVDLLARAGHLEAAWDFIEKMPGKVDAVMLGALLAACRKCKNAEVGEKVINRIMKLEPT 489
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS + +YA + E ++ M+E G+ K PG SW+E+ KV +F AS +
Sbjct: 490 NSWNYVVSSKIYATSDKMDESARMIGLMRERGVNK-TPGCSWVEVHGKVLEFYASTEPQH 548
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
++++Y + L +++L YVP L+
Sbjct: 549 GAEDMYQLMGILVNEMRLEGYVPNLD 574
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S TM +C + R D +S + + A +AC G L LG+ + +V
Sbjct: 155 SLITMYSCLGDHLTARRVFDGIPH--RDVVSWNSIMKAYERAACRDAGNLVLGKWVEEWV 212
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
G ++D IGSALV MY KCG ++ + VF + K++ WN++I G A +G ++EA+
Sbjct: 213 RSAGMEVDSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAI 272
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----- 182
A+F M + P+ +T + VLS+C G +E G GY++ H G
Sbjct: 273 ALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVE-----LDGYAL-----HRGLYSNV 322
Query: 183 ----CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K G LE A + F+ N W AL+ G
Sbjct: 323 YVGTALVDMYAKCGDLEKATYVFGKMPFK-NEASWNALICG 362
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP ++ SW +I + N + +A+ F M+N G+ PD +T VLSAC H G L+
Sbjct: 348 MPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSACVHAGLLEY 407
Query: 60 GREIH---LYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
GR + V +I I+ Y S +VD+ A+ G L+
Sbjct: 408 GRRLFSSLTPVFKIIPKIEHY--SCIVDLLARAGHLE 442
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 117/277 (42%), Gaps = 21/277 (7%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
PA S+ + ++ ++ +L F M + + PD T+ +L A A + + R
Sbjct: 77 PAPTAFSYNVALRFFASSRP-DTSLRLFLSMLRAELRPDAYTLPFLLLAAARCPSPAVAR 135
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H ++ ++G + +L+ MY+ G + VF + +++ WNSI++
Sbjct: 136 SAHAFLEKLGLRDHDHTVHSLITMYSCLGDHLTARRVFDGIPHRDVVSWNSIMKAYERAA 195
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSAC-----THAGLVEEGRRRFLSMTCGYSITP 176
+ + + E V G+ S++ + G +EE RR F ++
Sbjct: 196 CRDAGNLVLGKWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMEEARRVFDGIS-----NK 250
Query: 177 EVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----KLHRNLEIA 229
+V + M+ ++ G+ +A+ L +R + +P+ + +L C L +E+
Sbjct: 251 DVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVELD 310
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKI 266
A++ + +N T L++MYA+ + T +
Sbjct: 311 GYALHRGLY---SNVYVGTALVDMYAKCGDLEKATYV 344
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 203/330 (61%), Gaps = 2/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + +++W+ MI YS+ EAL F EM+ G+ PD+VTM V+SACA GALDLG+
Sbjct: 189 PDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGK 248
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y+ + G +D+ + +AL+DMYAKCG ++R+ VF + EK+ W+++I G A+HG
Sbjct: 249 WVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHG 308
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F RM+ V PN VTFI VLSAC H+GLV++G RR+ S+ I P +E+Y
Sbjct: 309 LVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDG-RRYWSIMQNLGIKPSMENY 367
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL ++GLL+DA + PN++IW LL CK ++IA A L+ LEP
Sbjct: 368 GCMIDLLCRSGLLDDAYSFVIDMPISPNSIIWRTLLVACKSSNRIDIAESASKRLLELEP 427
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+N LL N+ A S+W V+ +R MK+ + G S IE+ +++F SD SH
Sbjct: 428 HNPENYVLLSNLCASNSQWDRVSYLRKKMKDSNVTA-VAGCSSIEINGYLHEFVVSDDSH 486
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EI L ++ ++++ A + P A+L
Sbjct: 487 PEIKEIRLVLREIADRVRRAGHKPWTAAVL 516
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 5/215 (2%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P+ T+A L ACA + A GR++H ++ G + Y+ + L+++YAKC + + V
Sbjct: 124 PNTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTV 183
Query: 99 FFKLR-EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
F + +K+L W+++I G + G EAL +F M VEP+ VT + V+SAC AG
Sbjct: 184 FDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGA 243
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++ G+ + IT ++E ++D+ +K GL+E A + + + + W A++
Sbjct: 244 LDLGKWVHAYID-RKGITVDLELSTALIDMYAKCGLIERARGVF-DAMVEKDTKAWSAMI 301
Query: 218 GGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLL 250
G +H +E A + ++ L+ PNN + +L
Sbjct: 302 VGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVL 336
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +W+ MI ++ + +AL F+ M + P+ VT VLSACAH G +D G
Sbjct: 289 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
R + +G + ++D+ + G LD
Sbjct: 349 RRYWSIMQNLGIKPSMENYGCMIDLLCRSGLLD 381
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 195/327 (59%), Gaps = 1/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ + +ISW MI Y Q E L+ ++EM+ SG++PDQ T A+V ACA L L+ G
Sbjct: 152 LSKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKG 211
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H +++ +V + SAL+DMY KC SL VF K +N+ W ++I G H
Sbjct: 212 KQAHCVMIKSQIKENVVVNSALMDMYFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQH 271
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F +M E PN VTF++V+SAC+H GLV EG F+SMT Y I P +H
Sbjct: 272 GRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGLVNEGWEYFMSMTRDYGIQPRGQH 331
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y MVDLL +AG L +A E +++S ++VIWGALLG C++H N+++ A + LE
Sbjct: 332 YAAMVDLLGRAGRLHEAFEFVQNSPCGEHSVIWGALLGACRVHGNIDMLRFAAKKYFDLE 391
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G +L N YA W V ++R M+E G+ K PG S IE++R+V+ F DKS
Sbjct: 392 PENAGKYVVLSNAYATFGLWDNVAEVRGVMRESGMRKD-PGYSRIEVQREVHFFLMGDKS 450
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPEL 327
H +++IY + ++ LK A YVP+L
Sbjct: 451 HKQTEQIYEVIKEVTCILKDAGYVPDL 477
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 2/198 (1%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
++A + +G+ + T A +L C GR IH ++ +G+ D Y+ + L+ +
Sbjct: 76 MEAVGLLCRTGLQVEPATYALLLQECIFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLIL 135
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
+AK G LD S ++F L +K+L WN++I G G E L ++D M + P+ TF
Sbjct: 136 HAKTGDLDTSHILFDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTF 195
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
SV AC +E+G++ M I V ++D+ K L D + S
Sbjct: 196 ASVFRACATLATLEKGKQAHCVMIKS-QIKENVVVNSALMDMYFKCSSLYDGHRVFNKS- 253
Query: 206 FQPNAVIWGALLGGCKLH 223
N + W AL+ G H
Sbjct: 254 LNRNVITWTALISGYGQH 271
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/275 (45%), Positives = 187/275 (68%), Gaps = 1/275 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DIISW MI YS ++EAL F +M+ S + P+ VT ++L ACA+LGALDLG+ I
Sbjct: 328 KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387
Query: 64 HLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H Y+ + + + + ++L+DMYAKCG+++ + VF ++ K+L WN++I GLA+HG
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGH 447
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A+ AL +F +M E EP+ +TF+ VLSAC+HAGLVE GR+ F SM Y I+P+++HYG
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYG 507
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL +AGL ++A L+++ + +P+ IWG+LLG C++H N+E+ A L LEP
Sbjct: 508 CMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277
N G LL N+YA RW +V +IR + + G++K
Sbjct: 568 NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 17/237 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD +SW MI Y+Q+ +F EAL F EMK + ++P++ TM TVLSACA G+L+LG
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ ++ G ++ + +AL+DMY+KCG LD++ +F + EK++ WN +I G +
Sbjct: 284 NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EALA+F +M NVEPN VTF+S+L AC + G ++ G+ ++FL +T
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLT---- 399
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV-IWGALLGGCKLHRNLEIA 229
+ ++D+ +K G +E A ++ K P ++ W A++ G +H + +A
Sbjct: 400 ---NTSLWTSLIDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGHANMA 451
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 41/278 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W TMI S + A+D + M G+ P+ T +L +CA +GA G++IH +V+
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVL 159
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE--------------------KN 106
++G + D ++ ++L++MYA+ G L + LVF K LR+ +
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARR 219
Query: 107 LF---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
LF WN++I G A G EALA F M NV PN T ++VLSAC +G
Sbjct: 220 LFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS 279
Query: 158 VEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
+E G R ++ + + + ++D+ SK G L+ A +L + + + W
Sbjct: 280 LELGNWVRSWIE---DHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISWNV 335
Query: 216 LLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
++GG H N +A+ M +EPN+ + ++L
Sbjct: 336 MIGGYS-HMNSYKEALALFRKMQQSNVEPNDVTFVSIL 372
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
T+LS C L ++IH +++ G + S L++ A G+L +LL+F +
Sbjct: 37 TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ N F WN++I G ++ A+ + RM+ VEPN TF +L +C G +EG++
Sbjct: 94 QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153
Query: 164 -RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
+ G P V + ++++ ++ G L A EL+ S +AV + AL+ G L
Sbjct: 154 IHGHVLKLGLESDPFV--HTSLINMYAQNGELGYA-ELVFSKSSLRDAVSFTALITGYTL 210
Query: 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
L+ A E+ + ++ ++ YA+ R+ E MK +
Sbjct: 211 RGCLDDARRLFEEIPV---RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + + SW MI+ + + AL+ F +M++ G PD +T VLSAC+H G ++LG
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGL 117
R+ +++ +DI + ++D+ + G D + + + K + W S++
Sbjct: 487 RQCFSSMVE-DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGAC 545
Query: 118 AVHG 121
VHG
Sbjct: 546 RVHG 549
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 199/316 (62%), Gaps = 3/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ SW +I +QN F + ++ F M P+ VT+ LSAC H+G L LG
Sbjct: 197 MLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLG 256
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV + G D ++ +ALVDMY KCGSL ++ VF EK L WNS+I A+H
Sbjct: 257 RWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALH 316
Query: 121 GFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G + A+A+F++M+ V P+ VTF+ +L+ACTH GLVE+G F M Y I P++
Sbjct: 317 GQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQI 376
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC++DLL +AG ++A+++++ +P+ V+WG+LL GCK+H ++A A +L+
Sbjct: 377 EHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIE 436
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
++P+N GY +L N+Y E+ +W EV + +K+ K PG SWIE++ +V+QF + D
Sbjct: 437 IDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSYK-VPGCSWIEVDDQVHQFYSLD 495
Query: 299 KSHPASDEIYSSLSKL 314
KS+P ++++Y L L
Sbjct: 496 KSNPKTEDLYIVLESL 511
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 116/273 (42%), Gaps = 42/273 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFR-EALDAFNEM-KNSGISPDQVTMATVLSACAHLGALD 58
+P+ + +T MIT Y+ + AL F M ++ P+ L C A +
Sbjct: 65 IPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCPESCAAE 124
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMY-------------------------------- 86
+H +++ GF + +ALVD Y
Sbjct: 125 ---SLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGF 181
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A+ G ++ ++ VF ++ ++++ WN++I G +G + + +F RM++E PNGVT +
Sbjct: 182 ARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVV 241
Query: 147 SVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
LSAC H G+++ GR G + V +VD+ K G L A ++ +
Sbjct: 242 CALSACGHMGMLQLGRWIHGYVYKNGLAFDSFV--LNALVDMYGKCGSLGKARKVFEMNP 299
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ W +++ LH + A IA+ E M+
Sbjct: 300 -EKGLTSWNSMINCFALHGQSDSA-IAIFEQMV 330
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 201/324 (62%), Gaps = 2/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGRE 62
+DI++W+ MI Y+Q A+ F +M I P++ T + +++ACA A ++ G++
Sbjct: 70 KDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQ 129
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H + ++ F+ + + SAL+ MY+K G ++ + VF + RE++L WNSII G A HG+
Sbjct: 130 LHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGY 189
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+AL +F+ M +N+E +GVTFI V+SACTH GL EG+R F M + I P +EHY
Sbjct: 190 GRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYS 249
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL +AG+L A+E+I F +A +W LL +HRNLE+ +A ++L+ L+P
Sbjct: 250 CMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQPQ 309
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N LL NMYA V W E K+R M+E + K+ G SWIE++ K Y F A D SHP
Sbjct: 310 NPASYVLLTNMYASVGNWKERAKVRKLMEEKKV-KKVAGYSWIEVKNKTYTFLAGDVSHP 368
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S++IY+ L +L QLK A Y P+
Sbjct: 369 LSNQIYAKLEELSCQLKGAGYQPD 392
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 25/202 (12%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M GI P+ T +T+L+A + E+H ++ + +G+AL+D Y K G+
Sbjct: 1 MSREGIKPNDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
+D + VF ++ EK++ W+++I G A G A+ +F +M E ++PN TF +++A
Sbjct: 57 VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116
Query: 152 CT--HAGLVEEGRR--------RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
C AG VE+G++ RF + C S ++ + SK G +E A E+
Sbjct: 117 CAAPTAG-VEQGKQLHAWSIKSRFNNALCVSS---------ALLTMYSKRGDIESAFEVF 166
Query: 202 RSSKFQPNAVIWGALLGGCKLH 223
+ + + + V W +++ G H
Sbjct: 167 KRQR-ERDLVSWNSIISGYAQH 187
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 201/328 (61%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD I W +++ +QN EAL F M +G+ P VT ++++ C +L +L G
Sbjct: 231 LPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFG 290
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H YV+ GF+ +V+I S+L+DMY KCG + + +F K+ ++ W ++I G A+H
Sbjct: 291 KQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALH 350
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F+RM N +PN +TF++VL+AC+HAGLV++G + F SM+ Y I P +EH
Sbjct: 351 GPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEH 410
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ + D L +AG L++A I + +P A +W LL C++H+N +A ++M LE
Sbjct: 411 FAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELE 470
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G +L NMY+ RW E +R +M++ G++K P SWIE++ K++ F A D+S
Sbjct: 471 PRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKD-PACSWIEVKSKLHVFVAHDRS 529
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP D I +L+ EQ+ +VP E
Sbjct: 530 HPWYDRIIDALNAFSEQMAREGHVPNTE 557
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW T++ ++ + EAL +M G PD T++TVL A + G
Sbjct: 130 MIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRG 189
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H + + GFD DV++GS+L+DMYA C D S+ VF L ++ WNS++ G A +
Sbjct: 190 LEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQN 249
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F RM+ V P VTF S++ C + + G++ + CG V
Sbjct: 250 GSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICG-GFEDNVFI 308
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ K G + A I P+ V W A++ G LH
Sbjct: 309 SSSLIDMYCKCGEISIA-HCIFDKMSSPDVVSWTAMIMGYALH 350
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQV--TMATVLSACAHLGALDLGREIHLY 66
W I + F +A+ F M+ S V ++ L +CA LG LG +H
Sbjct: 16 WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75
Query: 67 VMQIGFDIDVYIGSALVDMYAK--CGSLDRSLL-----------------VFFKLREKNL 107
++ G D + +AL+++Y K C LD + + VF ++ E+++
Sbjct: 76 AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFL 166
WN+++ G A G HEAL +M E P+ T +VL V+ G
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+ G+ +V ++D+ + + ++++ + + + ++W +LL GC + ++
Sbjct: 196 AFRNGFD--SDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSV 252
Query: 227 EIA 229
E A
Sbjct: 253 EEA 255
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 29/359 (8%)
Query: 1 MPARDIISWTTMI----------TCYSQNKQF------------------REALDAFNEM 32
M RD +SW+ M+ C+ ++ E+L F++M
Sbjct: 421 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKM 480
Query: 33 KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
+ G+ PD+V M TV+ ACA LGA+ R I Y+ + F +DV +G+A++DM+AKCG +
Sbjct: 481 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 540
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ + +F ++ EKN+ W+++I HG +AL +F M+ + PN +T +S+L AC
Sbjct: 541 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 600
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+HAGLVEEG R F M YS+ +V+HY C+VDLL +AG L++AL+LI S + + +
Sbjct: 601 SHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 660
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
WGA LG C+ H+++ +A A L+ L+P N G+ LL N+YA RW +V K R M +
Sbjct: 661 WGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQ 720
Query: 273 LGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ K+ PG +WIE++ K +QF+ D +HP S EIY L L +L+L YVP+ +L
Sbjct: 721 RRL-KKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVL 778
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 95/152 (62%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y++ + E+L F +M+ G+ PD+V M TV+ ACA LGA+
Sbjct: 219 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 278
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I Y+ + F +DV +G+A++DMYAKCG ++ + +F ++ EKN+ W+++I H
Sbjct: 279 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 338
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
G +AL +F M+ + P+ +T S+L AC
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 41/232 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW+ M+ +++ + F E+ G PD T+ V+ AC L L +
Sbjct: 139 MCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM- 197
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
ALVDMY KC ++ + +F K++E++L W +I G A
Sbjct: 198 --------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAEC 237
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--------RRRF-LSMTCG 171
G A+E+L +F++M E V P+ V ++V+ AC G + + R++F L + G
Sbjct: 238 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 297
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ M+D+ +K G +E A E+ + + N + W A++ H
Sbjct: 298 TA----------MIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 338
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 120/260 (46%), Gaps = 48/260 (18%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ISW+ MI Y + Q R+ALD F M +SG+ PD++T+A++L AC + L
Sbjct: 320 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQV 379
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-- 118
R++H G ++ + + LV Y+ +LD + +F + ++ W+ ++ G A
Sbjct: 380 RQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 439
Query: 119 --------------------------VHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
G A+E+L +FD+M E V P+ V ++V+ AC
Sbjct: 440 GDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 499
Query: 153 THAGLVEEG--------RRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
G + + R++F L + G + M+D+ +K G +E A E+
Sbjct: 500 AKLGAMHKARTIDDYIQRKKFQLDVILGTA----------MIDMHAKCGCVESAREIFDR 549
Query: 204 SKFQPNAVIWGALLGGCKLH 223
+ + N + W A++ H
Sbjct: 550 ME-EKNVISWSAMIAAYGYH 568
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 204/337 (60%), Gaps = 24/337 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWTTMI+ Y++N + ++AL+ F++M+ +G+ DQV + L+ACA LG L +G
Sbjct: 224 MPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMG 283
Query: 61 REIHLYVMQIGFDIDVYIGS----------ALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
IH Y+ D ++GS AL+ MYA CG +D + VF + E++ W
Sbjct: 284 MWIHSYIQ------DTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSW 337
Query: 111 NSIIEGLAVHGFAHEALAMF---DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
S+I A G+A L +F R+ P+G+TFI VL AC+HAGLV+EGR+ F
Sbjct: 338 TSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKD 397
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
M + I P +EHYGCMVDLLS+AG L++A ELI + +PN +WGALLGGC+ +RN E
Sbjct: 398 MIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAE 457
Query: 228 IAHIAVNELMILEPN---NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSW 284
+A + V++ ++ EP+ +GY +LL +YA +W +V +R M +G+ K+ G SW
Sbjct: 458 LASL-VSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGV-KKPAGQSW 515
Query: 285 IEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321
+++ + A D++H + IY L K+ + K+
Sbjct: 516 VQINEVFHDSVAGDRTHENTSSIYEMLGKIPQPSKVG 552
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 120/253 (47%), Gaps = 45/253 (17%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
I W MI +++++ +++ FN+M + PD T + +L+AC +L G+++H
Sbjct: 92 ILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLSLREGQQVHSK 151
Query: 67 VMQIG-FDIDVYIGSALVDMYA------------------------------------KC 89
V+ G + +V++ S LV+ YA +
Sbjct: 152 VLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNVVCWNSMLAGYMRR 211
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G+LD + +F+++ E+N+ W ++I G A +G +AL +FD+M VE + V ++ L
Sbjct: 212 GNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAAL 271
Query: 150 SACTHAGLVEEGR--RRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
+AC G ++ G ++ T G + V ++ + + G++++A E+ R +
Sbjct: 272 TACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFR---W 328
Query: 207 QP--NAVIWGALL 217
P +AV W +L+
Sbjct: 329 MPERSAVSWTSLI 341
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF ++ + WN +I A +++ F++M+ + P+ T+ +L+ACT +
Sbjct: 82 VFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLS 141
Query: 158 VEEGRRRFLS-MTCGYS------ITPEVEHYGCMVD-----LLSKAGLLEDALELIRSSK 205
+ EG++ +T GY ++ V Y +V L S + +D E
Sbjct: 142 LREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSE------ 195
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
N V W ++L G NL+ A E + N T +++ YA+ + +
Sbjct: 196 --RNVVCWNSMLAGYMRRGNLDGARRIFYE---MPERNVVSWTTMISGYAKNGKCKQALN 250
Query: 266 IRVAMKELGIE 276
+ M++ G+E
Sbjct: 251 LFDQMRKAGVE 261
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 200/319 (62%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W MI Q K+ ++AL F EM+ S PD++TM LSAC+ LGALD+G
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + ++V +G++LVDMYAKCG++ +L VF ++ +N + +II GLA+H
Sbjct: 409 IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALH 468
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A++ F+ MI + P+ +TFI +LSAC H G+++ GR F M +++ P+++H
Sbjct: 469 GDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH 528
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y MVDLL +AGLLE+A L+ S + +A +WGALL GC++H N+E+ A +L+ L+
Sbjct: 529 YSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELD 588
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL MY E + W + + R M E G+EK PG S IE+ V +F DKS
Sbjct: 589 PSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEK-IPGCSSIEVNGIVCEFIVRDKS 647
Query: 301 HPASDEIYSSLSKLDEQLK 319
P S++IY L L ++
Sbjct: 648 RPESEKIYDRLHCLGRHMR 666
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 136/269 (50%), Gaps = 37/269 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SW +I Y + + +A+ + M++ G+ PD VTM ++S+C+ LG L+ G+
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Query: 62 EIHLYVMQIGFDIDVYIGSALVDM-------------------------------YAKCG 90
E + YV + G + + + +AL+DM YA+CG
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
LD S +F + EK++ WN++I G +ALA+F M N +P+ +T I LS
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397
Query: 151 ACTHAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC+ G ++ G R++ YS++ V +VD+ +K G + +AL + + +
Sbjct: 398 ACSQLGALDVGIWIHRYIE---KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR- 453
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELM 237
N++ + A++GG LH + A NE++
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMI 482
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 5/218 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGI---SPDQVTMATVLSACAHLGALDLGR 61
+I SW I +S+++ +E+ + +M G PD T + CA L LG
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
I +V+++ ++ ++ +A + M+A CG ++ + VF + ++L WN +I G G
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A +A+ ++ M E V+P+ VT I ++S+C+ G + G + F + +
Sbjct: 237 EAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG-KEFYEYVKENGLRMTIPLV 295
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ SK G + +A + + + + V W ++ G
Sbjct: 296 NALMDMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISG 332
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 206/322 (63%), Gaps = 5/322 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW+ MIT Y FREAL+ FN+++ +G+ P+ + L+AC++LG+LD G
Sbjct: 200 MPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHG 259
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YV + G ++D +G+ALVDMYAKCG ++ + VF K+ +K+ F + S+I GLA H
Sbjct: 260 RWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANH 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + +A+ +F RM E V PN VTFI VLSAC+ GLV+EG R F M+ Y I P V+H
Sbjct: 320 GQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQH 379
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLLE+A L+R +P++ + GALL C++H ++E+ V L+
Sbjct: 380 YGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERG 439
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE--KRCPGSSWIEMERKVYQFAASD 298
++ G LL NMYA ++W V K+R KE+G + K+ PG S IE++ V +F A D
Sbjct: 440 LDHGGVHVLLSNMYASSNQWDWVVKVR---KEMGAKKVKKVPGCSSIEIDGSVSEFIAGD 496
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
S+ +++ L +D LK
Sbjct: 497 MSYLRVEDVMLVLLGIDNHLKF 518
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 29/191 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC--------- 51
+P R W T+I + + + AL + M +G P+ T + VL AC
Sbjct: 70 LPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLA 129
Query: 52 AHLGALDLGRE---------IHLYV-------MQIGFDI----DVYIGSALVDMYAKCGS 91
+H + LG E IHLY + FD+ DV +AL++ Y K G
Sbjct: 130 SHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGH 189
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
++ + +F ++ E+N W+++I G G EAL +F+ + + PN + L+A
Sbjct: 190 VEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTA 249
Query: 152 CTHAGLVEEGR 162
C++ G ++ GR
Sbjct: 250 CSYLGSLDHGR 260
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 43/222 (19%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS--LLVFFKLREKNLFCWNSIIEGLA 118
+++H +++ +D + ++ ++A + D S +F L + F WN+II
Sbjct: 27 KQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFV 86
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT---------HA-------------- 155
AL+++ M+ PN TF VL ACT HA
Sbjct: 87 EKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESYDFVL 146
Query: 156 -GL---------VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
GL VE R+ F TC IT + +++ K+G +E A EL
Sbjct: 147 NGLIHLYANWSSVEAARKLFDVSTCRDVIT-----WTALINGYVKSGHVEFARELFDQMP 201
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSG 245
+ N V W A++ G A N+L + L PN++G
Sbjct: 202 -ERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAG 242
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 206/331 (62%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++I W MI+ Y++N REA+D F+EM N + PD +++ + +SACA +G+L+
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R ++ YV + + DV+I SAL+DM+AKCGS++ + LVF + ++++ W+++I G +H
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA++++ M V PN VTF+ +L AC H+G+V EG F + + I P+ +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG-WWFFNRMADHKINPQQQH 461
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL +AG L+ A E+I+ QP +WGALL CK HR++E+ A +L ++
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G+ L N+YA W V ++RV MKE G+ K G SW+E+ ++ F DKS
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV-GCSWVEVRGRLEAFRVGDKS 580
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI + ++ +LK +V +A L
Sbjct: 581 HPRYEEIERQVEWIESRLKEGGFVANKDASL 611
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 141/253 (55%), Gaps = 4/253 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I+SWT +++ Y+QN + EAL+ F++M+ + PD V + +VL+A L L G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V+++G +I+ + +L MYAKCG + + ++F K++ NL WN++I G A +
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EA+ MF MI ++V P+ ++ S +SAC G +E+ R + +V
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY-EYVGRSDYRDDVFI 360
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE-IAHIAVNELMI 238
++D+ +K G +E A L+ + V+W A++ G LH R E I+ E
Sbjct: 361 SSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 239 LEPNNSGYCTLLL 251
+ PN+ + LL+
Sbjct: 420 VHPNDVTFLGLLM 432
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P I W +I YS+N F++AL ++ M+ + +SPD T +L AC+ L L +G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
R +H V ++GFD DV++ + L+ +YAKC L + VF L E+ + W +I+ A
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPE 177
+G EAL +F +M +V+P+ V +SVL+A T +++GR S+ G I P+
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + +K G + A L K PN ++W A++ G
Sbjct: 259 L--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
NSGI D A+++ + H L ++IH ++ +G ++ + L+ + G +
Sbjct: 15 NSGIHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDIT 70
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF L +F WN+II G + + +AL M+ M V P+ TF +L AC+
Sbjct: 71 FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130
Query: 154 HAGLVEEGR 162
++ GR
Sbjct: 131 GLSHLQMGR 139
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 204/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW+TMI ++ N F +A F E++ G+ P++V++ VLSACA GA + G
Sbjct: 229 MPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG 288
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +V + GF + + +AL+D Y+KCG+LD + LVF + ++ W ++I G+A+H
Sbjct: 289 RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMH 348
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EA+ +F+ M N++P+ +TFIS+L AC+HAGLV+ G F M Y I P +EH
Sbjct: 349 GYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEH 408
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG L+ A + + PN ++W LLG C +H NL +A +L L+
Sbjct: 409 YGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELD 468
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA +W +V +R +M + K+ PG S IE+ R +Y F A +K
Sbjct: 469 PENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRL-KKTPGWSMIEVNRIIYSFVAGEKQ 527
Query: 301 HPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
+ + E + L ++ +L++ YVPE+ ++L
Sbjct: 528 NDIAVEAHQKLREIMSRLRIEGGYVPEVGSVL 559
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREI 63
D+ + T+I S + AL F EM+ ++ PD + A +L A A+ AL G ++
Sbjct: 69 DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G D +++G+ L+ MYA+C L + VF ++ E N+ WN+I+
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV 188
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A +F M N+ + +L+ T AG ++ R F+ M ++ +
Sbjct: 189 KDAEQVFRCMPIRNLTSWNI----MLAGYTKAGELQLAREVFMKMPLKDDVS-----WST 239
Query: 184 MVDLLSKAGLLEDALELIRSSK---FQPNAVIWGALLGGCKLHRNLEIAHI 231
M+ + G DA R + +PN V +L C E I
Sbjct: 240 MIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRI 290
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 14/229 (6%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+I+ Y++ A F+EM I P+ V +++AC + ++ M
Sbjct: 145 TTLISMYAECACLVFARKVFDEM----IEPNIVAWNAIVAACFRCEGVKDAEQV-FRCMP 199
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
I ++ + ++ Y K G L + VF K+ K+ W+++I G A +G ++A A
Sbjct: 200 IR---NLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAF 256
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDL 187
F + E + PN V+ VLSAC AG E GR F+ + G+ V + ++D
Sbjct: 257 FREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKS-GFLQIISVNN--ALIDT 313
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
SK G L D L+ + + +AV W A++ G +H E A NE+
Sbjct: 314 YSKCGNL-DMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEM 361
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 206/327 (62%), Gaps = 5/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLGR 61
R++++WT MI ++Q +AL F EM + G++P+ T++ +L ACAHL A+ +G+
Sbjct: 477 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 536
Query: 62 EIHLYVMQIG-FDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH YV++ ++ Y + + L+DMY+KCG +D + VF + +K+ W S++ G +
Sbjct: 537 QIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 596
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +FD+M P+ +TF+ VL AC+H G+V++G F SM+ Y +TP E
Sbjct: 597 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 656
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C +DLL+++G L+ A ++ +P AV+W ALL C++H N+E+A A+N+L+ +
Sbjct: 657 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 716
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
N G TL+ N+YA RW +V +IR MK+ GI+KR PG SW++ ++ F D+
Sbjct: 717 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKR-PGCSWVQGQKGTASFFVGDR 775
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP S +IY+ L L +++K YVPE
Sbjct: 776 SHPLSPQIYALLESLIDRIKAMGYVPE 802
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 28/240 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++WT +I YSQ EAL+ F +M SG P+ VT+ +VLSACA LGA G EIH
Sbjct: 365 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIH 424
Query: 65 LYVMQI----------GFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNS 112
Y ++ G D D+ + +AL+DMY+KC S RS+ L E+N+ W
Sbjct: 425 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 484
Query: 113 IIEGLAVHGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGR-------R 163
+I G A +G +++AL +F MI E V PN T +L AC H + G+ R
Sbjct: 485 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 544
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ Y + C++D+ SK G ++ A + S Q +A+ W +++ G +H
Sbjct: 545 HHRYESSAYFVA------NCLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 597
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 51/266 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHLGALD 58
D+ISW ++++ + ++ ALD F++M K + D +++ +L AC L A+
Sbjct: 223 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 282
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN------- 111
+E+H ++ G DV++G+AL+D YAKCG ++ ++ VF + K++ WN
Sbjct: 283 QTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 342
Query: 112 ----------------------------SIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
++I G + G +HEAL +F +MI+ PN V
Sbjct: 343 QSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCV 402
Query: 144 TFISVLSACTHAGLVEEGRR------RFLSMTCGYSITPEVEH---YGCMVDLLSKAGLL 194
T ISVLSAC G +G + +T E E Y ++D+ SK
Sbjct: 403 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 462
Query: 195 EDALELIRSSKFQP-NAVIWGALLGG 219
+ A + + N V W ++GG
Sbjct: 463 KAARSIFDDIPLEERNVVTWTVMIGG 488
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 11/230 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I + + + A++ M +G PD T+ VL AC L + G H +
Sbjct: 123 WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLIC 182
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHE 125
GF+ +V+I +ALV MY++CGSL+ + ++F ++ ++ ++ WNSI+ A
Sbjct: 183 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 242
Query: 126 ALAMFDRM---IYE---NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
AL +F +M ++E N + ++ +++L AC V + + + + P+V
Sbjct: 243 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF-PDVF 301
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++D +K GL+E+A+++ +F+ + V W A++ G N E A
Sbjct: 302 VGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAA 350
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 4/179 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ISWT+M+T Y + + EALD F++M+ +G PD +T VL AC+H G +D G
Sbjct: 579 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 638
Query: 61 RE-IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
G + +D+ A+ G LD++ + E W +++
Sbjct: 639 LSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACR 698
Query: 119 VHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
VH A ++++ N E +G T IS + A T + R R L G P
Sbjct: 699 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYA-TAGRWKDVARIRHLMKKSGIKKRP 756
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+G+ +V Y CG+ D +LLV ++ WN +I G A+ + RM+
Sbjct: 91 LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
P+ T VL AC G F + C V +V + S+ G LE+A
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 206/327 (62%), Gaps = 5/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLGR 61
R++++WT MI ++Q +AL F EM + G++P+ T++ +L ACAHL A+ +G+
Sbjct: 484 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 543
Query: 62 EIHLYVMQIG-FDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH YV++ ++ Y + + L+DMY+KCG +D + VF + +K+ W S++ G +
Sbjct: 544 QIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 603
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +FD+M P+ +TF+ VL AC+H G+V++G F SM+ Y +TP E
Sbjct: 604 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 663
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C +DLL+++G L+ A ++ +P AV+W ALL C++H N+E+A A+N+L+ +
Sbjct: 664 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 723
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
N G TL+ N+YA RW +V +IR MK+ GI+KR PG SW++ ++ F D+
Sbjct: 724 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKR-PGCSWVQGQKGTASFFVGDR 782
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP S +IY+ L L +++K YVPE
Sbjct: 783 SHPLSPQIYALLESLIDRIKAMGYVPE 809
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 28/240 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++WT +I YSQ EAL+ F +M SG P+ VT+ +VLSACA LGA G EIH
Sbjct: 372 DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIH 431
Query: 65 LYVMQI----------GFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNS 112
Y ++ G D D+ + +AL+DMY+KC S RS+ L E+N+ W
Sbjct: 432 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 491
Query: 113 IIEGLAVHGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGR-------R 163
+I G A +G +++AL +F MI E V PN T +L AC H + G+ R
Sbjct: 492 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 551
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ Y + C++D+ SK G ++ A + S Q +A+ W +++ G +H
Sbjct: 552 HHRYESSAYFVA------NCLIDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 604
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 51/266 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHLGALD 58
D+ISW ++++ + ++ ALD F++M K + D +++ +L AC L A+
Sbjct: 230 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 289
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN------- 111
+E+H ++ G DV++G+AL+D YAKCG ++ ++ VF + K++ WN
Sbjct: 290 QTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 349
Query: 112 ----------------------------SIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
++I G + G +HEAL +F +MI+ PN V
Sbjct: 350 QSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCV 409
Query: 144 TFISVLSACTHAGLVEEGRR------RFLSMTCGYSITPEVEH---YGCMVDLLSKAGLL 194
T ISVLSAC G +G + +T E E Y ++D+ SK
Sbjct: 410 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 469
Query: 195 EDALELIRSSKFQP-NAVIWGALLGG 219
+ A + + N V W ++GG
Sbjct: 470 KAARSIFDDIPLEERNVVTWTVMIGG 495
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 11/230 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I + + + A++ M +G PD T+ VL AC L + G H +
Sbjct: 130 WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLIC 189
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHE 125
GF+ +V+I +ALV MY++CGSL+ + ++F ++ ++ ++ WNSI+ A
Sbjct: 190 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 249
Query: 126 ALAMFDRM---IYE---NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
AL +F +M ++E N + ++ +++L AC V + + + + P+V
Sbjct: 250 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF-PDVF 308
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++D +K GL+E+A+++ +F+ + V W A++ G N E A
Sbjct: 309 VGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAA 357
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 4/179 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ISWT+M+T Y + + EALD F++M+ +G PD +T VL AC+H G +D G
Sbjct: 586 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 645
Query: 61 RE-IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
G + +D+ A+ G LD++ + E W +++
Sbjct: 646 LSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACR 705
Query: 119 VHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
VH A ++++ N E +G T IS + A T + R R L G P
Sbjct: 706 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYA-TAGRWKDVARIRHLMKKSGIKKRP 763
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+G+ +V Y CG+ D +LLV ++ WN +I G A+ + RM+
Sbjct: 98 LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
P+ T VL AC G F + C V +V + S+ G LE+A
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 214/332 (64%), Gaps = 7/332 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++++W +MI Y+QN Q A++ F EM + ++PD+VTM +V+SAC HLGAL+L
Sbjct: 321 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 380
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G + ++ + + + +A++ MY++CGS++ + VF ++ +++ +N++I G A
Sbjct: 381 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 440
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ + M +EP+ VTFI VL+AC+HAGL+EEGR+ F S+ P ++
Sbjct: 441 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAID 495
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL + G LEDA + +P+A ++G+LL ++H+ +E+ +A N+L L
Sbjct: 496 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 555
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YA RW +V +IR AMK+ G+ K+ G SW+E K+++F +D+
Sbjct: 556 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV-KKTTGWSWVEYGGKLHKFIVADR 614
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SH SD+IY L +L ++++ A Y+ + +L
Sbjct: 615 SHERSDDIYQLLIELRKKMREAGYIADKSCVL 646
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 7/226 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R ++SW M++ Y+QN EAL F+EM N+GI PD+ T TV+SAC+ G L
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLA 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + Q ++ ++ +AL+DMYAK G LD + +F + +N+ WNS+I G A +
Sbjct: 280 ASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQN 339
Query: 121 GFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPE 177
G + A+ +F MI + + P+ VT +SV+SAC H G +E G RFL+ I
Sbjct: 340 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN---QIKLS 396
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + M+ + S+ G +EDA + + + + V + L+ G H
Sbjct: 397 ISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAH 441
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 117/286 (40%), Gaps = 85/286 (29%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +T+M+ YS + + + + +M+ G+ PD ++ + G +G H
Sbjct: 64 NVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSA---GTGGIG--FH 118
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
+V+++G D ++ +A++DMYA+ G + + VF +
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178
Query: 102 ----------LREKNLFCW-------------------------------NSIIEGLAVH 120
+ E+N+ W N+++ G A +
Sbjct: 179 EGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG-------LVEEGRRRFLSMTCGYS 173
G A EAL +FD M+ +EP+ T+++V+SAC+ G LV ++ + + C
Sbjct: 239 GLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVR 298
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G L+ A +L + + N V W +++ G
Sbjct: 299 TA--------LLDMYAKFGDLDSARKLFNTMPGR-NVVTWNSMIAG 335
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 214/332 (64%), Gaps = 7/332 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP R++++W +MI Y+QN Q A++ F EM + ++PD+VTM +V+SAC HLGAL+L
Sbjct: 353 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 412
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G + ++ + + + +A++ MY++CGS++ + VF ++ +++ +N++I G A
Sbjct: 413 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 472
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ + M +EP+ VTFI VL+AC+HAGL+EEGR+ F S+ P ++
Sbjct: 473 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAID 527
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL + G LEDA + +P+A ++G+LL ++H+ +E+ +A N+L L
Sbjct: 528 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 587
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+NSG LL N+YA RW +V +IR AMK+ G+ K+ G SW+E K+++F +D+
Sbjct: 588 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV-KKTTGWSWVEYGGKLHKFIVADR 646
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SH SD+IY L +L ++++ A Y+ + +L
Sbjct: 647 SHERSDDIYQLLIELRKKMREAGYIADKSCVL 678
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 47/262 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG----A 56
MP R ++SW M++ Y+QN E L F+EM N+GI PD+ T TV+SAC+ G A
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLA 279
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS------------------------- 91
L R +H Q ++ ++ +AL+DMYAKCGS
Sbjct: 280 ASLVRTLH----QKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMIS 335
Query: 92 -------LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY-ENVEPNGV 143
LD + +F + +N+ WNS+I G A +G + A+ +F MI + + P+ V
Sbjct: 336 AYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 395
Query: 144 TFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
T +SV+SAC H G +E G RFL+ I + + M+ + S+ G +EDA +
Sbjct: 396 TMVSVISACGHLGALELGNWVVRFLTEN---QIKLSISGHNAMIFMYSRCGSMEDAKRVF 452
Query: 202 RSSKFQPNAVIWGALLGGCKLH 223
+ + + V + L+ G H
Sbjct: 453 QEMATR-DVVSYNTLISGFAAH 473
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 125/278 (44%), Gaps = 27/278 (9%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ +T+M+ YS + + + F M+ G+ PD ++ + + G +G H
Sbjct: 64 NVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGG---IG--FH 118
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL--REKNLFCWNSIIEGLAVHGF 122
+V+++G D ++ +A++DMYA+ G + + VF ++ E+ + WN+++ G
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEH 180
+A +FD M NV +T+ ++++ +E RR F M PE V
Sbjct: 179 EGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCM-------PERSVVS 227
Query: 181 YGCMVDLLSKAGLLEDALELIR---SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ M+ ++ GL E+ L L ++ +P+ W ++ C + +A V L
Sbjct: 228 WNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH 287
Query: 238 ILEPN-NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274
+ N T LL+MYA+ + R ELG
Sbjct: 288 QKQIQLNCFVRTALLDMYAKC---GSIGAARRIFDELG 322
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 29/220 (13%)
Query: 72 FDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
FD+ +V +A+V YAK L+ + F + E+++ WN+++ G A +G A E L
Sbjct: 186 FDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVL 245
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAG-------LVEEGRRRFLSMTCGYSITPEVEH 180
+FD M+ +EP+ T+++V+SAC+ G LV ++ + + C
Sbjct: 246 RLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTA----- 300
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL---- 236
++D+ +K G + A + N+V W A++ NL+ A N +
Sbjct: 301 ---LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRN 357
Query: 237 ------MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270
MI +G + + ++ E+ ++T V M
Sbjct: 358 VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 397
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 207/331 (62%), Gaps = 7/331 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+ A D++ W TMI+ +SQ + E + F EM+++G PD + V SAC++L + +
Sbjct: 305 IAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSV 364
Query: 60 GREIHLYVMQIGFDID---VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
G+++H + I DI V + +ALV MY+KCG++ + VF + E N+ NS+I G
Sbjct: 365 GKQVH--ALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAG 422
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A HG E+L +F+ M+ +++ PN +TFI+VLSAC H G VEEG++ F M + I P
Sbjct: 423 YAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEP 482
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
E EHY CM+DLL +AG L++A +I + F P ++ W LLG C+ H N+E+A A NE
Sbjct: 483 EAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEF 542
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ LEP N+ +L NMYA +RW E ++ M+E G++K+ PG SWIE+++KV+ F A
Sbjct: 543 LQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKK-PGCSWIEIDKKVHVFVA 601
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
D SHP EI+ + ++ ++K A YVP++
Sbjct: 602 EDTSHPMIKEIHVYMGEILRKMKQAGYVPDI 632
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 7/253 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD +SW MI Q+++ EA++ F EM G+ D TMA+VL+A + L G +
Sbjct: 205 GRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQ 264
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH- 120
H +++ GF + ++GS L+D+Y+KC G + VF ++ +L WN++I G + +
Sbjct: 265 FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYE 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ + + F M + P+ +F+ V SAC++ G++ V
Sbjct: 325 DLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSV 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V + SK G + DA + + + N V +++ G H +E+ + + ELM+
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGYAQH-GVEVESLRLFELMLQK 442
Query: 239 -LEPNNSGYCTLL 250
+ PN + +L
Sbjct: 443 DIAPNTITFIAVL 455
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 18/235 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P DI+S+ T+I Y+ + R AL F E++ D T++ V+ AC + L
Sbjct: 101 IPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACG--DDVGLV 158
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGL 117
R++H +V+ G+D + +A++ Y++ G L+ + VF ++ E ++ WN++I
Sbjct: 159 RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE--GRRRFLSMTCGYSIT 175
H EA+ +F M+ ++ + T SVL+A T V++ G +F M
Sbjct: 219 GQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFT---CVKDLVGGMQFHGMMIKSGFH 275
Query: 176 PEVEHYGCMVDLLSK--AGLLE--DALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
++DL SK G++E E I + P+ V+W ++ G + +L
Sbjct: 276 GNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA----PDLVLWNTMISGFSQYEDL 326
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 42/218 (19%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T +L AC L G+ +H + Y+ + +Y+KCGSL + F
Sbjct: 11 TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ N+F +N++I A H H A +FD E +P+ V++ ++++A G
Sbjct: 71 QYPNVFSYNTLINAYAKHSLIHLARQVFD----EIPQPDIVSYNTLIAAYADRGECRPAL 126
Query: 163 RRF----------------------------------LSMTCGYSITPEVEHYGCMVDLL 188
R F + CGY V + ++
Sbjct: 127 RLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNN--AVLACY 184
Query: 189 SKAGLLEDALELIR--SSKFQPNAVIWGALLGGCKLHR 224
S+ G L +A + R + V W A++ C HR
Sbjct: 185 SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHR 222
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 205/335 (61%), Gaps = 6/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK--NSGISPDQVTMATVLSACAHLGALD 58
MP ++ SW M+ Y Q +F EA F+ MK N+ + D+ T+LSAC LGALD
Sbjct: 214 MPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVL-DKFVATTMLSACTGLGALD 272
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEG 116
G+ IH Y+ + G ++D + +A+VDMY KCG L+++L VF L + + WN +I G
Sbjct: 273 QGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGG 332
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA+HG A+ +F M + V P+ +TF+++L+AC H+GLVEEGR F M Y I P
Sbjct: 333 LAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEP 392
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+EH+GCMVDLL +AG++ +A +LI P+ + G LLG CK HRN+E+ +
Sbjct: 393 RMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRV 452
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ LEPNNSG LL N+YA +W + K+R M + G+ K+ PG S IE++ V++F A
Sbjct: 453 IELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGV-KKAPGFSMIELQGTVHEFIA 511
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+++HP + E+++ + ++ E LK YV + +L
Sbjct: 512 GERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVL 546
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 43/266 (16%)
Query: 1 MPARDIISWTTMITCY--SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
+P D + T+I + SQ L ++ M + + P+ T ++L AC +
Sbjct: 83 IPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACR---KIQ 139
Query: 59 LGREIHLYVMQIGFD---------IDVYIG----------------------SALVDMYA 87
G +IH ++ + GF I +Y+ ++L+ Y+
Sbjct: 140 HGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYS 199
Query: 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTFI 146
K G +D + +F + +KN WN+++ HEA A+FDRM EN +
Sbjct: 200 KWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVAT 259
Query: 147 SVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
++LSACT G +++G+ ++ I + + +VD+ K G LE AL++ S
Sbjct: 260 TMLSACTGLGALDQGKWIHEYIKRN---GIELDSKLTTAIVDMYCKCGCLEKALQVFHSL 316
Query: 205 KFQPNAV-IWGALLGGCKLHRNLEIA 229
+ W ++GG +H N E A
Sbjct: 317 PLPCRWISSWNCMIGGLAMHGNGEAA 342
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 200/328 (60%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +DI+SWT+MI+ Q + +E+LD F EM SG PD V + +VLSACA LG LD G
Sbjct: 343 IPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYG 402
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+ DV+IG++L+DMYAKCG ++ + +F L KN+ WN+ I GLA++
Sbjct: 403 RWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAIN 462
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITPEVE 179
G EAL F ++ PN +TF++V SAC H+GLV+EGR F MT Y+++P +E
Sbjct: 463 GHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLE 522
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +A L+E+A+ELI P+ I GALL + N+E+ + +
Sbjct: 523 HYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNF 582
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
E SG LL N YA +WAEV +R MKE GI K PGSS I ++ K ++F D
Sbjct: 583 ECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISK-APGSSLIRVDGKSHKFVVGDN 641
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
+HP S++I+ L+ L Q L ++ L
Sbjct: 642 NHPQSEDIHVLLNILANQTYLEGHIDTL 669
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 11/222 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT +I+ Y + F +A+ F M ++P+ T ++L AC LG L+LG
Sbjct: 245 MPVRDVVSWTGLISGYMKAGLFNDAVALFLRMD---VAPNAATFVSILGACGKLGCLNLG 301
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH V + ++ + + L+DMY KC S+ + +F ++ EK++ W S+I GL +
Sbjct: 302 KGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQY 361
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E+L +F M+ EP+GV SVLSAC GL++ G R++ +S H
Sbjct: 362 QCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYG--RWVHEYIDHSRIKWDVH 419
Query: 181 YGC-MVDLLSKAGLLEDALELIR--SSKFQPNAVIWGALLGG 219
G ++D+ +K G +E A ++ SK N W A +GG
Sbjct: 420 IGTSLIDMYAKCGCIEMAQQMFNLLPSK---NIRTWNAYIGG 458
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 5/208 (2%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
+I+ Y A+ + + +G PD T+ VL +CA + ++IH ++
Sbjct: 155 IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 214
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
D+++ ++ V +Y+ CG + VF + +++ W +I G G ++A+A+F
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFL 274
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
RM +V PN TF+S+L AC G + G + + Y E+ ++D+ K
Sbjct: 275 RM---DVAPNAATFVSILGACGKLGCLNLG-KGIHGLVSKYPHGKELVVSNTLMDMYVKC 330
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGG 219
+ DA L + + V W +++ G
Sbjct: 331 ESVTDAKRLFDEIP-EKDIVSWTSMISG 357
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 201/320 (62%), Gaps = 2/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SWT +I+ Y++N +AL+ F +M + PDQ T ++ L ACA + +L G
Sbjct: 284 MPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHG 343
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV 119
++IH Y+++I F + + SAL+DMY+KCGSL VF + K ++ WN+II LA
Sbjct: 344 KQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQ 403
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ M D M+ +P+ +TF+ +L+AC+H+GLV++G F SM+C Y I P E
Sbjct: 404 HGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQE 463
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C++DLL +AG E+ ++ + ++P+ +W ALLG C++H ++E+ A L+ L
Sbjct: 464 HYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIEL 523
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP +S LL ++YA + RW V K+R M E ++K SW+E+E KV+ F+ SD
Sbjct: 524 EPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKE-RAISWLEIENKVHSFSVSDS 582
Query: 300 SHPASDEIYSSLSKLDEQLK 319
SHP ++IYS L +L Q++
Sbjct: 583 SHPLKEQIYSVLEQLAGQME 602
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 32/254 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW TM+ ++Q + EAL ++E + GI + + A VL+ C L + L
Sbjct: 152 MPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLT 211
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD-----------RSLL------------ 97
R++H ++ GF +V + S+++D Y KCG + R +L
Sbjct: 212 RQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKW 271
Query: 98 --------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+F ++ EKN W ++I G A +G H+AL +F +M+ +V P+ TF S L
Sbjct: 272 GDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCL 331
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
AC ++ G ++ + + P ++D+ SK G L ++ + +
Sbjct: 332 CACASIASLKHG-KQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLD 390
Query: 210 AVIWGALLGGCKLH 223
V+W ++ H
Sbjct: 391 VVLWNTIISALAQH 404
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD-IDV 76
+ + EA+ + + G+ D T+A++L CA AL G+ +HL++ G
Sbjct: 36 KKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGT 95
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + L++MYAKCG + VF K+ +NL+ WN+++ G A G A +FD+M +
Sbjct: 96 FLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK 155
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRR-----RFLSMTC-GYSIT 175
+V V++ +++ A G +E R R L + C G+S
Sbjct: 156 DV----VSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 206/328 (62%), Gaps = 2/328 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++WT MI Y QN +A++ F M + G P+ T+A +LSA + + +L+ G++IH
Sbjct: 338 DVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIH 397
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIEGLAVHGFA 123
++ G + +G+AL MYAK GS++ + VF LR+ ++ W S+I LA HG
Sbjct: 398 ASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLG 457
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ +F++M+ ++P+ +T++ VLSACTH GLVE+GR F M + I P + HY C
Sbjct: 458 EEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYAC 517
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDL +AGLL++A + + + +P+ + WG+LL CK+++N+++A +A L+++EPNN
Sbjct: 518 MVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNN 577
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG + L N+Y+ +W + KIR MK G++K G SW++++ K + F D HP
Sbjct: 578 SGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKE-QGLSWVQIQNKTHVFGVEDGLHPQ 636
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
DEIY + K+ +++K + P+ E++L
Sbjct: 637 KDEIYKMMDKIWKEIKKMGFAPDTESVL 664
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 42/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD +SWTT+I Y+Q +F +A+ F +M + P Q T+ VL++CA G+ +G
Sbjct: 67 IPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAK-------------------------------C 89
+++H +V+++G V + ++L++MYAK C
Sbjct: 127 KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNC 186
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISV 148
G +D +L F L E+++ WNS+I G HGF +EAL F ++ + +++P+ + S
Sbjct: 187 GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASA 246
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----CMVDLLSKAGLLEDALELIRSS 204
LSAC + + G++ GY + + G ++ + +K+G +E A +I S
Sbjct: 247 LSACANLEKLSFGKQ-----IHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQS 301
Query: 205 KFQPNAVI-WGALLGG 219
VI + ALL G
Sbjct: 302 GISDLDVIAFTALLNG 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 127/255 (49%), Gaps = 37/255 (14%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RDI+SW +MI +Q+ EAL F+ +K++ + PD+ ++A+ LSACA+L L G++
Sbjct: 202 RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQ 261
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLD--RSLL----------------------- 97
IH Y+++ FD +G+AL+ MYAK G ++ R ++
Sbjct: 262 IHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKL 321
Query: 98 --------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+F L++ ++ W ++I G +G ++A+ +F M+ E PN T ++L
Sbjct: 322 GDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAML 381
Query: 150 SACTHAGLVEEGRRRFLS-MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
SA + + G++ S + G +++P V + + + +KAG + A ++ +
Sbjct: 382 SASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNR 439
Query: 209 NAVIWGALLGGCKLH 223
+ V W +++ H
Sbjct: 440 DTVSWTSMIMALAQH 454
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +SWT+MI +Q+ EA++ F +M GI PD +T VLSAC H G ++ GR
Sbjct: 439 RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRS- 497
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+ +M+ ID + + +VD++ + G L + + E ++ W S++ V+
Sbjct: 498 YFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVY 557
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLS 150
A +R++ +EPN S L+
Sbjct: 558 KNVDLAKVAAERLLL--IEPNNSGAYSALA 585
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 53 HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNS 112
HL A DL E+ + + + ++ YAK G L+++ VF + ++ W +
Sbjct: 26 HLDAHDLFNEMPVKT--------TFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTT 77
Query: 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172
II G G +A+ +F M+ + V P T +VL++C G G ++ S
Sbjct: 78 IIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIG-KKVHSFVVKL 136
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
+ V ++++ +K G L+ A + K + N W A++ LH N +A
Sbjct: 137 GLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMIS---LHMNCGRVDLA 192
Query: 233 VNELMIL 239
+ + +L
Sbjct: 193 LAQFELL 199
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++++G VY+ + L+++YAK G + +F ++ K F WN+I+ G A G +A
Sbjct: 1 MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+FD + + V++ +++ G E+ + F+ M
Sbjct: 61 HQVFDLIPVR----DSVSWTTIIVGYNQMGRFEDAIKIFVDM 98
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 204/335 (60%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+I W TMI Y + EAL F M ++P+ VT VL ACA LGALDLG
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG 379
Query: 61 REIHLYVMQ----IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
+ +H Y+ + G +V + ++++ MYAKCG ++ + VF + ++L WN++I G
Sbjct: 380 KWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISG 439
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA++G A AL +F+ MI E +P+ +TF+ VLSACT AG VE G R F SM Y I+P
Sbjct: 440 LAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISP 499
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+++HYGCM+DLL+++G ++A L+ + + +P+ IWG+LL C++H +E L
Sbjct: 500 KLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERL 559
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
LEP NSG LL N+YA RW +V KIR + + G+ K+ PG + IE++ V++F
Sbjct: 560 FELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGM-KKVPGCTSIEIDGVVHEFLV 618
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
DK HP S+ I+ L ++D L+ +VP+ +L
Sbjct: 619 GDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVL 653
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 147/256 (57%), Gaps = 8/256 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+PA+D++SW MI Y Q+ +F EAL F M+ + +SP+Q TM +VLSAC HL +L+LG
Sbjct: 219 IPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG 278
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ I +V GF ++ + +ALVDMY+KCG + + +F + +K++ WN++I G
Sbjct: 279 KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHL 338
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL +F+ M+ ENV PN VTF++VL AC G ++ G+ + T V +
Sbjct: 339 SLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNN 398
Query: 181 ---YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ ++ + +K G +E A ++ RS + A W A++ G ++ + E A + + E M
Sbjct: 399 VSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERA-LGLFEEM 456
Query: 238 I---LEPNNSGYCTLL 250
I +P++ + +L
Sbjct: 457 INEGFQPDDITFVGVL 472
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 37/280 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I W T+I +S +L F++M +SG+ P+ T ++ +CA A +++H
Sbjct: 91 NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE------------------ 104
+ +++ + ++ ++L+ MY++ G L + LVF K LR+
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210
Query: 105 -----------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
K++ WN++I G G EALA F RM +V PN T +SVLSAC
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H +E G + S ++ +VD+ SK G + A +L + + ++W
Sbjct: 271 HLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME-DKDVILW 328
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
++GG H +L + + E+M+ E PN+ + +L
Sbjct: 329 NTMIGG-YCHLSLYEEALVLFEVMLRENVTPNDVTFLAVL 367
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 201/327 (61%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ ++SW MI Y+QN EAL+AF EM++ I PD TM +V+ A A L + I
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWI 355
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ D +V++ +ALVDMYAKCG++ + +F + +++ WN++I+G HG
Sbjct: 356 HGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLG 415
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
++ +F M ++PN +TF+ LSAC+H+GLVEEG F SM Y I P ++HYG
Sbjct: 416 KTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGA 475
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L A + I+ +P ++GA+LG CK+H+N+++ A E+ L P++
Sbjct: 476 MVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDD 535
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY LL N+YA S W +V K+R M++ G++K PG S +E+ +V+ F + SHP
Sbjct: 536 GGYHVLLANIYATASMWGKVAKVRTIMEKSGLQK-TPGCSLVEIGNEVHSFYSGTTSHPQ 594
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
S +IYS L L ++++ A YVP+ ++
Sbjct: 595 SKKIYSYLETLVDEIRAAGYVPDTNSI 621
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 7/225 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++ W TMI+ Y+QN + AL M G PD +T+ ++L A A L +G
Sbjct: 91 MPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIG 150
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H YV++ GF+ V + +ALVDMY+KCGS+ + ++F + + + WNS+I+G
Sbjct: 151 MAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQS 210
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVE 179
G A A+ +F +M+ E V+P VT + L AC G +E G +F+ + + +V
Sbjct: 211 GDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG--KFVHKLVDQLKLDSDVS 268
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQP----NAVIWGALLGGC 220
++ + SK ++ A ++ ++ + + NA+I G GC
Sbjct: 269 VMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGC 313
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 16/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SW +MI Y Q+ A+ F +M + G+ P VT+ L ACA LG L+ G
Sbjct: 192 MDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H V Q+ D DV + ++L+ MY+KC +D + +F LR K L WN++I G A +
Sbjct: 252 KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQN 311
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
G +EAL F M N++P+ T +SV+ A + + + RRFL +
Sbjct: 312 GCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNV-FV 370
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+T +VD+ +K G + A +L + + + W A++ G H
Sbjct: 371 MT-------ALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTH 412
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 10/212 (4%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
M+ Y+++ AL F+ MK+ + P +L C L G+EIH V+ G
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F +++ + +V+MYAKC ++ + +F ++ E++L CWN++I G A +GFA AL +
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----GCMVDL 187
RM E P+ +T +S+L A L+ G GY + E +VD+
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGM-----AVHGYVLRAGFESLVNVSTALVDM 175
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
SK G + A +I V W +++ G
Sbjct: 176 YSKCGSVSIA-RVIFDGMDHRTVVSWNSMIDG 206
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M AR +I+W MI Y + + +++ F EMK I P+ +T LSAC+H G ++ G
Sbjct: 394 MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRS 95
M+ + I+ + A+VD+ + G L+++
Sbjct: 454 L-CFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQA 489
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 202/318 (63%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +I+W +I+ YSQN + L+ + +MK+SG+ PD T+ +VLS+CAHLGA +G
Sbjct: 217 MPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 276
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ V GF +V++ +A + MYA+CG+L ++ VF + K+L W ++I +H
Sbjct: 277 HEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMH 336
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L +FD MI + P+G F+ VLSAC+H+GL ++G F +M Y + P EH
Sbjct: 337 GMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEH 396
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++A+E I S +P+ +WGALLG CK+H+N+++A +A +++ E
Sbjct: 397 YSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFE 456
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN GY L+ N+Y++ + +IRV M+E K+ PG S++E + +V+ F A D+S
Sbjct: 457 PNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKK-PGYSYVEHKGRVHLFLAGDRS 515
Query: 301 HPASDEIYSSLSKLDEQL 318
H ++E++ L +L+ +
Sbjct: 516 HEQTEEVHRMLDELETSV 533
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 2/231 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + +I+ Y+ N + +A F MK +G+S D VTM ++ C L LGR +H
Sbjct: 122 VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D +V + ++ + MY KCGS++ +F ++ K L WN++I G + +G A++
Sbjct: 182 CVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 241
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L ++++M V P+ T +SVLS+C H G + G + P V +
Sbjct: 242 LELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG-HEVGKLVESNGFVPNVFVSNASIS 300
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ ++ G L A + + + V W A++G +H EI + ++++
Sbjct: 301 MYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMI 350
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 45/262 (17%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W + + F E++ + M SG SPD + +L +CA L G+++H +V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF--CWNSIIEGLAVHGFAHEA 126
+ G + + ++ +AL+ MY KCG + + VF + + + C+N++I G + +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACT--------------------------------- 153
MF RM V + VT + ++ CT
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 154 --HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQP 208
G VE GRR F M IT + ++ S+ GL D LEL ++SS P
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLIT-----WNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255
Query: 209 NAVIWGALLGGCKLHRNLEIAH 230
+ ++L C +I H
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGH 277
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 206/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
M RD +SW+T+I + N EALD F +M+ + PD+VTM +V+SA +HLG L+L
Sbjct: 145 MSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLEL 204
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + ++ ++GF + V +G+AL+DM+++CGS+D S++VF K+ +N+ W ++I GL +
Sbjct: 205 GRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGI 264
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + EALAMF M V+P+ VTF VL AC+H GLV+EG F S+ Y + P ++
Sbjct: 265 HGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLD 324
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+L +AGLL +A + + +PN++IW LLG C H NL +A ++ +
Sbjct: 325 HYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKI 384
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ +G LL N+Y RW E IR M+E I K PG S I +++ +++F + D
Sbjct: 385 SSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKE-PGCSSINVDQTIHEFVSGDN 443
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S++I LS + L+ Y+ + + +L
Sbjct: 444 SHPQSEDITKFLSSIIGDLRNRGYMMQTKNVL 475
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 133/231 (57%), Gaps = 12/231 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P+ D I++ T+I +S+ +L F M+++GI D T VL AC+ L +
Sbjct: 48 IPSPDTIAYNTIIRSHSRFFP-SHSLSYFFSMRSNGIPLDNFTFPFVLKACSRL---QIN 103
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++ G D+++ +AL+ +Y CGSL+ ++ VF ++ E++ W+++I +
Sbjct: 104 LHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNN 163
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPE 177
G+A EAL +F++M E+ V P+ VT +SV+SA +H G +E GR R F+ G+ ++
Sbjct: 164 GYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIG-RLGFGVS-- 220
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE 227
V ++D+ S+ G +++++ + + N + W AL+ G +H R++E
Sbjct: 221 VALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGIHGRSME 270
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 203/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +++W +MI+ Y QN +EA+ F+ MK G+ P+ T +VLSACAHLGA LG
Sbjct: 172 MRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y + G D++V +G++L++MY +CG++ ++ VF ++E+N+ W ++I G +
Sbjct: 232 CWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTN 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +A+ +F M + PN +TF++VLSAC HAGLV EGRR F SM Y + PEVEH
Sbjct: 292 GYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEH 351
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C+VD+L +AGLL++A I+ +P IW A+LG CK+H+N + + E
Sbjct: 352 HVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASE 411
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N + +L N+YA R +V +R M ++K+ G S I+++RK Y F+ DKS
Sbjct: 412 PGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQV-GYSTIDLDRKTYLFSMGDKS 470
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H ++EIY L +L + + A YV ++++
Sbjct: 471 HTETNEIYHYLDQLMRKCREAGYVTVSDSVM 501
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P D +T++I S+ F +L + M S ++P T +V+ +CA L AL
Sbjct: 70 VPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRH 129
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH +V+ GF DVY+ +AL+ Y KCG L + VF K+R++++ WNS+I G
Sbjct: 130 GRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQ 189
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+GFA EA+ +FDRM VEPN TF+SVLSAC H G G G + V
Sbjct: 190 NGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILG-CWVHEYAVGNGLDLNVV 248
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++++ ++ G + A E+ S K + N V W A++ G
Sbjct: 249 LGTSLINMYTRCGNVSKAREVFDSMK-ERNVVAWTAMISG 287
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
L L ++H +V+ G+ ++ + L+++ GS+ + +F + + F + S+I
Sbjct: 25 LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS 84
Query: 117 LA-VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ H F+ +L + RM+ NV P+ TF SV+ +C + GR
Sbjct: 85 TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGR 131
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 197/332 (59%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W MI Y + EAL+ F +M+ G+ P ++ ++LS CA L +L G
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYG 350
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++ FD DVY+ S L+ MY KCG L ++ LVF + K++ WNSII G A H
Sbjct: 351 RQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASH 410
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M PN VT I++L+AC++ G +EEG F SM + +TP VEH
Sbjct: 411 GLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEH 470
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C VD+L +AG ++ A+ELI S +P+A +WGALLG CK H L++A +A +L +E
Sbjct: 471 YSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIE 530
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD-K 299
P N+G LL ++ A S+W +V ++R M+ + K PG SWIE+ +KV+ F +
Sbjct: 531 PENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSK-FPGCSWIEVGKKVHMFTRGGIR 589
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP I L K D L+ A Y P+ +L
Sbjct: 590 NHPEQAMILMMLEKTDGLLREAGYSPDCSHVL 621
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++I+WTTMIT Y QNK+ A F M +V+ ++L G ++
Sbjct: 198 MRERNVITWTTMITGYGQNKRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDA 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E VM + V +A++ + G + ++ VF ++ +++ W +I+
Sbjct: 254 EEF-FEVMPMK---PVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERK 309
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
GF EAL +F +M + V P+ + IS+LS C ++ GR+
Sbjct: 310 GFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQ 352
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI----------------------- 37
MP R+I+SW +++ Y +N+ EA + F M +
Sbjct: 74 MPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLF 133
Query: 38 ----SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
++V+ + G +D R+ LY M G DV + ++ + G +D
Sbjct: 134 WRMPERNEVSWTVMFGGLIDGGRIDDARK--LYDMMPG--KDVVASTNMIGGLCREGRVD 189
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++RE+N+ W ++I G + A +F+ M E V++ S+L T
Sbjct: 190 EAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVM----PEKTEVSWTSMLLGYT 245
Query: 154 HAGLVEEGRRRFLSM 168
+G +E+ F M
Sbjct: 246 LSGRIEDAEEFFEVM 260
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
++ G ++ + F LR K + WNSI+ G +G EA MFD M N+ V++
Sbjct: 28 SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI----VSWN 83
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204
++S ++EE R F I PE V + MV + G++ +A EL+
Sbjct: 84 GLVSGYIKNRMIEEARNVF-------EIMPERNVVSWTAMVKGYVQEGMVVEA-ELLFWR 135
Query: 205 KFQPNAVIWGALLGG 219
+ N V W + GG
Sbjct: 136 MPERNEVSWTVMFGG 150
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 127/297 (42%), Gaps = 31/297 (10%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ I SW ++++ Y N REA F+EM I V+ ++S ++ R
Sbjct: 46 KAIGSWNSIVSGYFANGLPREARQMFDEMPERNI----VSWNGLVSGYIKNRMIEEARN- 100
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
V +I + +V +A+V Y + G + + L+F+++ E+N W + GL G
Sbjct: 101 ---VFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRI 157
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A ++D M ++V V +++ G V+E R F M IT +
Sbjct: 158 DDARKLYDMMPGKDV----VASTNMIGGLCREGRVDEAREIFDEMRERNVIT-----WTT 208
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M+ + ++ A +L + V W ++L G L +E A E+M ++P
Sbjct: 209 MITGYGQNKRVDVARKLFEVMP-EKTEVSWTSMLLGYTLSGRIEDAE-EFFEVMPMKPVI 266
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM----ERKVYQFAA 296
+ C ++ EV E+ K R ++ E R ++W M ERK ++ A
Sbjct: 267 A--CNAMIVALGEV---GEIVKARRVFDQM--EDR-DNATWRGMIKAYERKGFELEA 315
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 206/328 (62%), Gaps = 4/328 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D++ WT MI Y Q F EA+ F EM+ + PD+ + +L+ CA +GAL+ G
Sbjct: 50 PVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGT 109
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH Y+ + G +D +G++L++MY+KCG ++++L +F LREK+ W SII GLA++G
Sbjct: 110 WIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNG 169
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F +M P+ VTFI VLSAC+H GLVEEGR F SMT Y+I P++EHY
Sbjct: 170 KTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHY 229
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVI---WGALLGGCKLHRNLEIAHIAVNELMI 238
GC++DLL +AG L++A ELI+ N +I +G+LL C++++N+++ +L+
Sbjct: 230 GCLIDLLGRAGQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVK 289
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+E +S TLL N+YA RW +V ++R MK+LG+ K+ PG S IE++ V++F +
Sbjct: 290 IESRDSSVHTLLANIYASAGRWVDVNRVRREMKDLGV-KKVPGCSSIEVDGIVHEFLVGN 348
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPE 326
S EIYS L ++ L S + +
Sbjct: 349 PSCSEMREIYSMLDRMRLDFALQSCIND 376
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 41/170 (24%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG----------------------- 121
MY KCG L + +F ++ KN+ CW S++ G +G
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 122 ------FAH--EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY- 172
F H EA+A+F M + V+P+ +++L+ C G +E+G + GY
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQG-----TWIHGYI 115
Query: 173 ---SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
I + ++++ SK G +E AL + + + + W +++ G
Sbjct: 116 DEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLR-EKDTATWTSIICG 164
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/286 (45%), Positives = 191/286 (66%), Gaps = 4/286 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLG 60
+D++ + MI CY+QN + +EAL FN M N + PD++T+A+V+SAC+ LG L G
Sbjct: 295 GKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFG 354
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ ++G ++D ++ +AL+D+YAKCGS+D++ +F LR+K+L + ++I G ++
Sbjct: 355 PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGIN 414
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +FD M+ + PN +TFI +L+A HAGLVEEG F SM Y++ P V+H
Sbjct: 415 GKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMK-KYNLVPSVDH 473
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDL +AG L++ALELI+S QP+A +WGALL C+LH N+E IA LE
Sbjct: 474 YGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE 533
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
P+ +GYC+LL N+YA RW +V ++R KE G K PG SW+E
Sbjct: 534 PDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSK-IPGCSWME 578
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 17/220 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D SW I +Q+ QF+EA + +M+ G+ P +++ L ACA + G IH
Sbjct: 69 DSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIH 128
Query: 65 LYVMQIGFD---IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
V + GF +Y+ +ALVD Y K G ++ + +F ++ E+N+ WNS++ G G
Sbjct: 129 GQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSG 188
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VE 179
A +FD + ++V +++ S++S AG +E+ F M PE
Sbjct: 189 DLVVAQRVFDEIPQKDV----ISWNSMISGYARAGDMEKALSLFQQM-------PERNFA 237
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+ + G ++ A + Q N V W ++ G
Sbjct: 238 SWNAMISGYVEFGDIDSARSFFDAMP-QRNNVSWMTMISG 276
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 24/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW +MI+ Y++ +AL F +M + + ++S G +D
Sbjct: 200 IPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFA----SWNAMISGYVEFGDIDSA 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + Q + ++ Y+KCG +D + +F ++ K+L +N++I A +
Sbjct: 256 RSFFDAMPQ----RNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQN 311
Query: 121 GFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAG------LVEEGRRRFLSMTCGY 172
EAL +F+ M+ NV+P+ +T SV+SAC+ G +E RR G+
Sbjct: 312 SRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGH 371
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
T ++DL +K G ++ A EL + + + V + A++ GC ++
Sbjct: 372 LAT-------ALLDLYAKCGSIDKAYELFHGLR-KKDLVAYTAMILGCGIN 414
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 195/330 (59%), Gaps = 1/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + + SW MI+ Y+QN +A+ F EM+ S SP+ VT+ +LSACA LGAL LG+
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H V F+ +Y+ +AL+ MYAKCGS+ + +F + +KN WN++I G +HG
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHG 500
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M+ + P VTF+ VL AC+HAGLV+EG F SM Y P V+HY
Sbjct: 501 QGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVD+L +AG L+ AL+ I + +P + +W LLG C++H++ +A +L L+P
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+N GY LL N+++ + + +R K+ + K PG + IE+ + F + D+SH
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK-APGYTLIEIGETPHVFTSGDQSH 679
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIY L KL+ +++ A Y PE E L
Sbjct: 680 PQVKEIYEKLEKLEGKMREAGYQPETELAL 709
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 32/298 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
MP +D I W TMI+ Y +N+ + E++ F ++ N + D T+ +L A A L L L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH + G Y+ + + +Y+KCG + +F + R+ ++ +N++I G
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE--EG---RRRFLS------- 167
+G +L++F ++ T +S++ H L+ G + FLS
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 168 MTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALELIR---SSKFQPN 209
+T YS E+E + M+ ++ GL EDA+ L R S+F PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLNMYAEVSRWAEVTKI 266
V +L C L + + + + +S Y T L+ MYA+ AE ++
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 5/219 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+++ MI Y+ N + +L F E+ SG T+ +++ HL L IH
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM---LIYAIH 342
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y ++ F + +AL +Y+K ++ + +F + EK+L WN++I G +G
Sbjct: 343 GYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+++F M PN VT +LSAC G + G + + + +
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTAL 461
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + +K G + +A L + N V W ++ G LH
Sbjct: 462 IGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ++W TMI+ Y + Q +EAL+ F EM NSGI+P VT VL AC+H G + G
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI + + + GF+ V + +VD+ + G L R+L + E W +++
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACR 600
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC--------THAGLVEEGRRRFLSMTC 170
+H + A + +++ ++P+ V + +LS A + + ++R L+
Sbjct: 601 IHKDTNLARTVSEKLF--ELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 171 GYSI-----TPEV 178
GY++ TP V
Sbjct: 659 GYTLIEIGETPHV 671
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 22/245 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+ + ++ +S N+ +L F + K++ + P+ T A +SA + GR I
Sbjct: 82 DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVI 141
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G D ++ +GS +V MY K ++ + VF ++ EK+ WN++I G +
Sbjct: 142 HGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E++ +F +I E+ + T + +L A A L E + G I G
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAV--AELQE--------LRLGMQIHSLATKTG 251
Query: 183 C---------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
C + L SK G ++ L R + +P+ V + A++ G + E++
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGETELSLSLF 310
Query: 234 NELMI 238
ELM+
Sbjct: 311 KELML 315
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 195/326 (59%), Gaps = 26/326 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +I Y+QN + EAL F +K I P T +L +
Sbjct: 341 MTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS---------- 390
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
D+++G++L+DMY KCGS++ VF K++E++ WN+II G A +
Sbjct: 391 --------------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQN 436
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ EAL +F +M+ +P+ VT I VL AC+HAGLVEEGR F SM + + P +H
Sbjct: 437 GYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-EHGLIPLKDH 495
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A LI + P+AV+WG+LL CK+H N+E+ A +L+ ++
Sbjct: 496 YTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEID 555
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL NMYAE+ RW +V ++R M++ G+ K+ PG SWIE+E +V+ F DKS
Sbjct: 556 PWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ-PGCSWIEVESRVHVFLVKDKS 614
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP +IYS L L EQ+K Y+P+
Sbjct: 615 HPHRKQIYSVLKMLTEQMKRVGYIPD 640
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 128/249 (51%), Gaps = 30/249 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D SW +M++ ++Q+ +F E+L+ F +M ++ + + LSACA L L++G
Sbjct: 107 MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMG 166
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V + + DVY+GSAL+DMY+KCGS+ + VF + E+NL WNS+I +
Sbjct: 167 TQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQN 226
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F RM+ +EP+ VT SV+SAC ++EG + + ++
Sbjct: 227 GPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVL 286
Query: 181 YGCMVDLLSKAGLLEDALEL------------------------IRSSKF------QPNA 210
+VD+ +K + +A + +++++F Q N
Sbjct: 287 GNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV 346
Query: 211 VIWGALLGG 219
V W AL+ G
Sbjct: 347 VSWNALIAG 355
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 16/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++W ++ITCY QN EAL+ F M +SG+ PD+VT+A+V+SACA L AL G
Sbjct: 208 MIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEG 267
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH V++ F D+ +G+ALVDMYAKC ++ + VF ++ +N+ S++ G A
Sbjct: 268 LQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYAR 327
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM----------T 169
A MF +M NV V++ ++++ T G EE R F + T
Sbjct: 328 AASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYT 383
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G + ++ ++D+ K G +ED + K + + V W A++ G
Sbjct: 384 FGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAIIVG 432
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P+ A +L +C + R +H ++ F ++++I + L+D+Y KC LD + +
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F ++ ++N F WNS+I L GF EA +F M EP+ ++ S++S
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSM----PEPDQCSWNSMVSGFAQHDRF 128
Query: 159 EEGRRRFLSM 168
EE F+ M
Sbjct: 129 EESLEYFVKM 138
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 204/326 (62%), Gaps = 13/326 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS----------GISPDQVTMATVLSA 50
M RD+ +W +I+ +QN F E + F EM + G P+QVT+ VLSA
Sbjct: 193 MVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSA 252
Query: 51 CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
C H G L LG+ IH YV + GF +D ++ +ALVDMY KCGSL+ + VF + K L W
Sbjct: 253 CGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLTSW 312
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIY--ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
NS+I A+HG +A+ F++M+ V P+ VTFI +L+ACTH GLVE+G F M
Sbjct: 313 NSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMM 372
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
Y I P++ HYGC++DLL +AG ++A+++++ +P+ V+WG+LL GCK+H ++
Sbjct: 373 IKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDL 432
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
A A +L+ ++P+N GY T+L N+Y ++ +W E+ + +K+ + PG SWIE++
Sbjct: 433 AEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQK-SYKIPGCSWIEVD 491
Query: 289 RKVYQFAASDKSHPASDEIYSSLSKL 314
KV+QF + D+S+P ++E+Y+ L L
Sbjct: 492 DKVHQFFSLDQSNPKTEELYNILESL 517
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 114/268 (42%), Gaps = 51/268 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I +T +IT +S Q F M NS I P+ VL + +DL +H
Sbjct: 69 NIYLFTAIITAFSS--QQHTTFKLFKTMLNSNIRPNNFIYPHVLKSVKERFLVDL---VH 123
Query: 65 LYVMQIGF--------------------------------DIDVYIGSALVDMYAKCGSL 92
+++ GF + ++ + + LV Y + G +
Sbjct: 124 AQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDV 183
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY----------ENVEPNG 142
++ L+VF ++ ++++ WN++I G +GF E + +F M++ + +PN
Sbjct: 184 EKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQ 243
Query: 143 VTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
VT + VLSAC H G+++ G+ G+ + V + +VD+ K G LE A ++
Sbjct: 244 VTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFVSN--ALVDMYGKCGSLELARKVF 301
Query: 202 RSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ + W +++ LH E A
Sbjct: 302 EMDQ-RKGLTSWNSMINCYALHGKCEDA 328
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 195/308 (63%), Gaps = 1/308 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW+ MI+ Y + Q EAL FN M+ GI D++TM +V+SACA+LG+LD
Sbjct: 343 MPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKA 402
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++ G + ++I +AL+DM+AKCG ++ +L VF ++ KN+ W S+I A+H
Sbjct: 403 KWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMH 462
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +L +F++M E EPN VTF+S+L AC HAGLV EGR F SM Y I P+ EH
Sbjct: 463 GDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEH 522
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +A L+++A+ LI S +PN IWG+LL C +H +L++ A +++ L+
Sbjct: 523 YGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLD 582
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN+ G LLL +Y + ++R MK + K G SW+E+ ++FAA +
Sbjct: 583 PNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKE-TGLSWMELNEPFHEFAAGGEK 641
Query: 301 HPASDEIY 308
HP S +I+
Sbjct: 642 HPESGKIF 649
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 35/255 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW M+ Y Q + ++EAL F +MKNSG+ PDQ+ +ATVL AC H+ L +G
Sbjct: 211 MAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD----------RSLLV------------ 98
+ IH Y++ I +I SAL+ +YA C +++ R LV
Sbjct: 271 KAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARN 330
Query: 99 ---------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
F + EK++ W+++I G +EAL++F+ M + + +T +SV+
Sbjct: 331 RKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVI 390
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHY-GCMVDLLSKAGLLEDALELIRSSKFQP 208
SAC + G +++ +++ S +V H ++D+ +K G + AL + +
Sbjct: 391 SACANLGSLDKA--KWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLK- 447
Query: 209 NAVIWGALLGGCKLH 223
N + W +++ +H
Sbjct: 448 NVITWTSMISAFAMH 462
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ G D ++G+AL YA CG + + VF + +++ W +++
Sbjct: 173 HALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNY 232
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTH 154
EAL +F +M V P+ + +VL AC H
Sbjct: 233 KEALLLFAKMKNSGVVPDQLILATVLPACGH 263
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 195/327 (59%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +W+ +I Y + EAL F+ M+ G+ P+ ++ ++LS C L +LD G
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H +++ FD+D+Y+ S L+ MY KCG L VF + K++ WNSII G A H
Sbjct: 350 RQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQH 409
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +AL +F M P+ +TFI VLSAC + G V+EG F SM Y + + EH
Sbjct: 410 GFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEH 469
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AG L +A+ LI + + +A++WGALL C+ H+NL++A IA +L+ LE
Sbjct: 470 YACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLE 529
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF-AASDK 299
P+++G LL N+YA SRW +V ++R M+ + K PG SWIE++ KV+ F
Sbjct: 530 PSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSK-SPGCSWIEVDNKVHMFTGGGSA 588
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP + I L KL L+ A Y P+
Sbjct: 589 SHPEHEMIMKKLEKLGASLREAGYCPD 615
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT+MI+ Y+ N + A F M + ++VT +L G ++
Sbjct: 197 MPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRINEA 252
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ M + V + ++ + G + ++ VF +++EK+ W+++I+
Sbjct: 253 AEL-FKAMPVK---PVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERK 308
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
GF EALA+F M E V PN + IS+LS C ++ GR+
Sbjct: 309 GFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQ 351
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 52/270 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++ + SW ++ Y NK+ EA F++M P++ T++
Sbjct: 42 LQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------PERNTISW-------------- 81
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ LV Y K G + + VF K+ E+N+ W S++ G
Sbjct: 82 -------------------NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQE 122
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F RM +NV V++ +L G V+E RR F + +V
Sbjct: 123 GLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEARRLFDMIP-----VKDVVA 173
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
M+ L G L +A E+ Q N V W +++ G ++ +++A ++
Sbjct: 174 STNMIGGLCSEGRLSEAREIFDEMP-QRNVVAWTSMISGYAMNNKVDVAR---KLFEVMP 229
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270
N T +L Y R E ++ AM
Sbjct: 230 DKNEVTWTAMLKGYTRSGRINEAAELFKAM 259
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
F I + +A+ G +DR+ +F L+ K + WN+I+ G + EA +FD
Sbjct: 12 FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLS 189
+M E N +++ ++S G++ E R+ F M PE V + MV
Sbjct: 72 KM----PERNTISWNGLVSGYVKNGMISEARKVFDKM-------PERNVVSWTSMVRGYV 120
Query: 190 KAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ GL+++A EL+ + N V W +LGG
Sbjct: 121 QEGLIDEA-ELLFWRMPEKNVVSWTVMLGG 149
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 209/329 (63%), Gaps = 1/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++++SWT +I + + + + EAL+ F EM+ +G+ PD VT+ ++SACA+LGAL LG
Sbjct: 183 LPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLG 242
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H VM+ F +V + ++L+DMYA+CG ++ + VF + ++NL WNSII G AV+
Sbjct: 243 LWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVN 302
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL+ F M E +EPNGV++ S L+AC+HAGL++EG + F + + +P +EH
Sbjct: 303 GLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEH 362
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL S+AG L++A ++I+ PN V+ G+LL C+ ++E+A + + L
Sbjct: 363 YGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELY 422
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P L N+YA V +W +K+R MKE G++K SS IE++ +++F + DK
Sbjct: 423 PGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSS-IEIDSGIHKFVSGDKY 481
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEA 329
H +D IYS+L L +L L YVP+
Sbjct: 482 HEENDYIYSALELLSFELHLYGYVPDFSG 510
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 139/285 (48%), Gaps = 39/285 (13%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH---LGALDL 59
+ +SWT+ I+ + +N F +A F +M + + P+ +T+ T+LSACAH ++
Sbjct: 49 SNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITF 108
Query: 60 GREIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G +H + + GF + DV +G+AL+DMYAKCG LD + LVF ++ +NL WN++I+G
Sbjct: 109 GAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYM 168
Query: 119 VHGFAHEALAMFDRMIYEN-------------------------------VEPNGVTFIS 147
+G +AL +FD++ +N V P+ VT I+
Sbjct: 169 KNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIA 228
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
++SAC + G + G + V+ ++D+ ++ G +E A ++ Q
Sbjct: 229 IISACANLGALGLG-LWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMS-Q 286
Query: 208 PNAVIWGALLGGCKLH--RNLEIAHIAVNELMILEPNNSGYCTLL 250
N V W +++ G ++ + ++ + LEPN Y + L
Sbjct: 287 RNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSAL 331
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 202/326 (61%), Gaps = 4/326 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
R +++WT +I +Q+ + EAL+ F++M ++ + P+ T++ L ACA LGAL GR
Sbjct: 440 RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 499
Query: 62 EIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH YV++ F+ +++ + L+DMY+K G +D + +VF + ++N W S++ G +H
Sbjct: 500 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 559
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M + P+GVTF+ VL AC+H+G+V++G F M + + P EH
Sbjct: 560 GRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 619
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+AG L++A+ELIR +P +W ALL C+++ N+E+ A N+L+ LE
Sbjct: 620 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 679
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G TLL N+YA W +V +IR MK GI+KR PG SW++ + F A D S
Sbjct: 680 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKR-PGCSWVQGRKGTATFFAGDWS 738
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S +IY L L +++K YVP+
Sbjct: 739 HPMSQQIYDLLRDLMQRIKALGYVPD 764
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 117/211 (55%), Gaps = 10/211 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D++SW +++ Y Q A+ F M ++ GI PD V++ VL ACA +GA G+++
Sbjct: 194 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 253
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y ++ G DV++G+A+VDMYAKCG ++ + VF +++ K++ WN+++ G + G
Sbjct: 254 HGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 313
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYG 182
+AL +F+++ E +E N VT+ +V++ GL E F M CG P V
Sbjct: 314 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSE--PNVV--- 368
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+V LLS L A L+ + +A+ W
Sbjct: 369 TLVSLLSGCAL---AGTLLHGKETHCHAIKW 396
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 12/230 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++W+ +I Y+Q EALD F +M+ G P+ VT+ ++LS CA G L G+E H
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390
Query: 65 LYVMQIGFDID-------VYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSIIE 115
+ ++ ++D + + +AL+DMY+KC S R++ +++++ W +I
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450
Query: 116 GLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
G A HG A+EAL +F +M+ + V PN T L AC G + GR+ +
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + C++D+ SK+G + DA ++ + Q N V W +L+ G +H
Sbjct: 511 ESAMLFVANCLIDMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMH 559
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 15/227 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P+ + W + S + F E L + M+ G PD T VL AC + + G
Sbjct: 86 PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG 145
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGL 117
+H V GF+ +V++G+ LV MY +CG+ + + VF ++RE+ +L WNSI+
Sbjct: 146 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 205
Query: 118 AVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
G + A+ MF+RM + + P+ V+ ++VL AC G G++ GY++
Sbjct: 206 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ-----VHGYALRS 260
Query: 177 ----EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V +VD+ +K G++E+A ++ K + + V W A++ G
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 306
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SWT+++T Y + + EAL F EM+ G+ PD VT VL AC+H G +D G
Sbjct: 541 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQG 600
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRSL 96
Y + D V G + +VD+ ++ G LD ++
Sbjct: 601 IN---YFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAM 637
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 216/338 (63%), Gaps = 8/338 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-----NSGISPDQVTMATVLSACAHLG 55
MP R++ISW+ +I Y +++EALD F EM+ + + P++ TM+TVLSAC LG
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSII 114
AL+ G+ +H Y+ + +ID+ +G+AL+DMYAKCGSL+R+ VF L +K++ ++++I
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 115 EGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
LA++G E +F M +N+ PN VTF+ +L AC H GL+ EG+ F M +
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
ITP ++HYGCMVDL ++GL+++A I S +P+ +IWG+LL G ++ +++ A+
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
L+ L+P NSG LL N+YA+ RW EV IR M+ GI K PG S++E+E V++
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINK-VPGCSYVEVEGVVHE 452
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
F D+S S+ IY+ L ++ ++L+ A YV + + +L
Sbjct: 453 FVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVL 490
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 110/292 (37%), Gaps = 75/292 (25%)
Query: 9 WTTMITCYSQN---KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
W +I N Q + + M+N +SPD T +L + + L LG+ H
Sbjct: 27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++ G D D ++ ++L++MY+ CG L + VF K+L WNS++ A G +
Sbjct: 87 QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146
Query: 126 ALAMFDRMIYEN------------------------------------VEPNGVTFISVL 149
A +FD M N V PN T +VL
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206
Query: 150 SACTHAGLVEEGR------------------RRFLSM--TCG-----------YSITPEV 178
SAC G +E+G+ + M CG +V
Sbjct: 207 SACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDV 266
Query: 179 EHYGCMVDLLSKAGLLEDAL----ELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+ Y M+ L+ GL ++ E+ S PN+V + +LG C +HR L
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGAC-VHRGL 317
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 204/329 (62%), Gaps = 4/329 (1%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ISW MI Y +N Q +AL F+ M S P+ VT+ VLS+ HL L G+
Sbjct: 520 PDRDLISWNAMIASYVKNNQAHKALLLFHRMI-SEAEPNSVTIINVLSSFTHLATLPQGQ 578
Query: 62 EIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H YV + GF + D+ + +A + MYA+CGSL + +F L ++N+ WN++I G +
Sbjct: 579 SLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGM 638
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G +A+ F +M+ + PNGVTF+SVLSAC+H+G +E G + F SM +++TPE+
Sbjct: 639 NGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELV 698
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL++ G +++A E I S +P+A +W ALL C+ + + + A +L L
Sbjct: 699 HYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKL 758
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N+G LL N+YA W EV +IR +KE G+ K PG SWI ++ +V+ F+A D+
Sbjct: 759 EPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKP-PGISWIIVKNQVHCFSAGDR 817
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELE 328
SHP SD+IY+ LS L ++ Y P+L
Sbjct: 818 SHPQSDKIYAKLSILLSSMRETGYDPDLR 846
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 5/253 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M DIISW TMI ++N +A + F M+ S I P+ T+ ++L+AC + LD G
Sbjct: 418 MKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFG 477
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH YVM+ +I+ + +AL DMY CG + +F +++L WN++I +
Sbjct: 478 RSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKN 537
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
AH+AL +F RMI E EPN VT I+VLS+ TH + +G+ +T G+S+ ++
Sbjct: 538 NQAHKALLLFHRMISE-AEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLS 596
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ + ++ G L+ A + ++ + N + W A++ G ++ A +A ++++
Sbjct: 597 LANAFITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNGRGSDAMLAFSQMLED 655
Query: 239 -LEPNNSGYCTLL 250
PN + ++L
Sbjct: 656 GFRPNGVTFVSVL 668
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 34/255 (13%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+I+SW MI+ Y + +AL+ F +M + D VTM + ACA LG+L LG
Sbjct: 215 MVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLG 274
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ F D+YI +AL++MY+ GSL+ S +F + ++ WNS+I A
Sbjct: 275 KQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAF 334
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT------------HAGLVEEGRR----- 163
G EA+ +F RM E V+ + T + +LS C HA +++ G R
Sbjct: 335 GCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASL 394
Query: 164 ------RFLSMTCGYSITP--------EVEHYGCMVDLLSKAGLLEDALEL---IRSSKF 206
+ + C S+ ++ + M+ L++ L A EL +R S+
Sbjct: 395 GNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEI 454
Query: 207 QPNAVIWGALLGGCK 221
+PN+ ++L C+
Sbjct: 455 KPNSYTIISILAACE 469
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDL 59
+P RD W +MI+ Y+ EA+D F M++ G+ D+ T+ +LS C L + L
Sbjct: 316 VPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLK 375
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H +V++ G ID +G+AL+ MY + ++ +F +++ ++ WN++I LA
Sbjct: 376 GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALAR 435
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ +A +F+RM ++PN T IS+L+AC ++ GR
Sbjct: 436 NTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGR 478
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D W ++I + K + L A+ +M++ G+ P+ T+ VL ACA A++ G+ I
Sbjct: 16 KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + DV +G+A+VD Y KCG ++ + VF + ++++ WN+++ G G
Sbjct: 76 HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 135
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EA+ + M EN+ PN T +++L AC A + GR
Sbjct: 136 EEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++ W M+ Y + EA+ EM + P+ TM +L AC L LG
Sbjct: 114 MSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLG 173
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
R +H Y ++ G FD + ++ +AL+ Y + R L + F L +N+ WN++I G
Sbjct: 174 RGVHGYCLRNGMFDSNPHVATALIGFYLRFDM--RVLPLLFDLMVVRNIVSWNAMISGYY 231
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G +AL +F +M+ + V+ + VT + + AC G ++ G ++ + + ++
Sbjct: 232 DVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLG-KQIHQLAIKFEFVEDL 290
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPN--AVIWGALL 217
++++ S G LE + +L S PN A +W +++
Sbjct: 291 YILNALLNMYSNNGSLESSHQLFESV---PNRDAPLWNSMI 328
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 5/166 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R+IISW MI Y N + +A+ AF++M G P+ VT +VLSAC+H G +++G
Sbjct: 621 LPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMG 680
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
++ H V ++ S +VD+ A+ G +D + + E + W +++
Sbjct: 681 LQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCR 740
Query: 119 VHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGRR 163
+ A +A +F+++ + +EP N ++ + + AGL E RR
Sbjct: 741 AYSDAKQAKTIFEKL--DKLEPMNAGNYVLLSNVYATAGLWLEVRR 784
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 4/162 (2%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
L R L K++ K+ WNS+I+ A L+ + +M V PN T VL A
Sbjct: 3 LQRLTLSPTKIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKA 62
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
C VE G+ S+ G + +V +VD K G +EDA + + + V
Sbjct: 63 CAAQNAVERGKSIHRSIQ-GTDLMDDVRVGTAVVDFYCKCGFVEDA-RCVFDAMSDRDVV 120
Query: 212 IWGALLGGCKLHRNLEIAHIAVNEL--MILEPNNSGYCTLLL 251
+W A++ G E A + V E+ L PN+ LLL
Sbjct: 121 LWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLL 162
>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
Length = 522
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 195/304 (64%), Gaps = 1/304 (0%)
Query: 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82
+ L F EM+ S I ++VT+ ++SACA LGAL G H+YV++ ++ ++G+AL
Sbjct: 132 KSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTAL 191
Query: 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
+DMY+KCG LD + +F +L ++ C+N++I G A+HG+ H+AL +F +M E + P+
Sbjct: 192 IDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDD 251
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
VT + + +C+H GLVEEG F SM Y + P++EHYGC+VDLL +AG L +A E +
Sbjct: 252 VTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVL 311
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262
+ +PNAVIW +LLG ++H NLEI + + L+ LEP SG LL NMYA ++RW +
Sbjct: 312 NMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDD 371
Query: 263 VTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLAS 322
V ++R MK+ GI K PGSS +E+ +++F DK+HP S EIY L ++ +L
Sbjct: 372 VKRVRKLMKDHGINK-VPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYG 430
Query: 323 YVPE 326
+ P
Sbjct: 431 HKPR 434
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD + + MI ++ + +ALD F +M G++PD VT+ + +C+H+G ++ G
Sbjct: 211 LPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 270
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
++ + ++ G + + LVD+ + G L + + K N W S++
Sbjct: 271 CDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAAR 330
Query: 119 VHG 121
VHG
Sbjct: 331 VHG 333
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M+ S + T+ +L C LD +++H +++ G Y S ++ + +
Sbjct: 1 MRGPNPSSNHPTLQ-LLEKCK---TLDTLKQVHAHMITTGLIFHTYPLSRIL-LISSTIV 55
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLA-VHGFAHEALAMFDRMI-YENVEPNGVTFISVL 149
+L +F + +F +N++I LA + H A +++ R++ + ++PNG TF S+
Sbjct: 56 FTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLF 115
Query: 150 SAC 152
AC
Sbjct: 116 KAC 118
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 198/311 (63%), Gaps = 1/311 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W MI Q K+ ++AL F EM+ S PD++TM LSAC+ LGALD+G
Sbjct: 256 MEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVG 315
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + ++V +G++LVDMYAKCG++ +L VF ++ +N + +II GLA+H
Sbjct: 316 IWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALH 375
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A++ F+ MI + P+ +TFI +LSAC H G+++ GR F M +++ P+++H
Sbjct: 376 GDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH 435
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y MVDLL +AGLLE+A +L+ S + +A +WGALL GC++H N+++ A +L+ L+
Sbjct: 436 YSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELD 495
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL MY E + W + + R M E G+EK PG S IE+ V +F DKS
Sbjct: 496 PSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEK-IPGCSSIEVNGIVSEFIVRDKS 554
Query: 301 HPASDEIYSSL 311
P S++IY L
Sbjct: 555 RPESEKIYDCL 565
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SW +I Y + + +A++ + M++ G+ PD VTM ++S+CA LG L+ G+
Sbjct: 143 PVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGK 202
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-------------REKNLF 108
E + YV G + + + +AL+DM++KCG + + +F L EK++
Sbjct: 203 EFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVV 262
Query: 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG--RRRFL 166
WN++I G + +ALA+F M N +P+ +T I LSAC+ G ++ G R++
Sbjct: 263 MWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYI 322
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+S++ V +VD+ +K G + +AL + + + N++ + A++GG LH +
Sbjct: 323 EK---HSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTR-NSLTYTAIIGGLALHGDA 378
Query: 227 EIAHIAVNELM 237
A NE++
Sbjct: 379 STAISYFNEMI 389
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 16/227 (7%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGI---SPDQVTMATVLSACAHLGALDLGREIH 64
SW I +S+++ ++A+ A+ +M G PD T + CA L LG I
Sbjct: 45 SWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMIL 104
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V ++ ++ ++ +A + M+A CG ++ + VF + ++L WN +I G G
Sbjct: 105 GHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGE 164
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+ ++ M E V+P+ VT I ++S+C G + G + F + + +
Sbjct: 165 KAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRG-KEFYEYVKANGLRMTIPLANAL 223
Query: 185 VDLLSKAGLLEDALEL--------IRSSKF----QPNAVIWGALLGG 219
+D+ SK G + +A + I S F + + V+W A++GG
Sbjct: 224 MDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGG 270
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 209/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++W MI Y +N Q L F M SG P+ ++++VL C++L AL LG
Sbjct: 187 MPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + ++ G++L+ MY KCG L+ + +F + +K++ WN++I G A H
Sbjct: 247 KQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQH 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD+M E ++P+ +TF++VLSAC HAG V+ G F SM Y + + +H
Sbjct: 307 GAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL + G L +A++LI+ F+P++ I+G LLG C++H+NLE+A A L+ L+
Sbjct: 367 YTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLD 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++ L N+YA ++RW V +R +MK+ + K PG SWIE++ V++F + D+
Sbjct: 427 PESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIK-TPGYSWIEVKSVVHEFRSGDRI 485
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L++L+ +++LA YVP+LE L
Sbjct: 486 HPELAFIHEKLNELERKMRLAGYVPDLEYAL 516
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 14/225 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP +D SW TMI+ +SQN +A + F M +NS V+ ++S G LD
Sbjct: 94 MPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNS------VSWNAMISGYVESGDLD 147
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
L +++ ++ V +A++ + K G ++ + F ++ KNL WN++I G
Sbjct: 148 LAKQL----FEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYI 203
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+ A L +F RM+ PN + SVL C++ ++ G ++ + C ++ +
Sbjct: 204 ENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLG-KQVHQLICKSPVSWNI 262
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G LEDA +L Q + V W A++ G H
Sbjct: 263 TAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVTWNAMISGYAQH 306
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 108/254 (42%), Gaps = 29/254 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHL-GALDLGREI 63
++IS +IT + ++ AL F M VT ++L+ ++ G + + R++
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESM----TVKTTVTWNSMLAGYSNRRGKIKVARQL 59
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
+ + D++ + ++ Y ++ + L F ++ K+ WN++I G + +G
Sbjct: 60 FDRIPEP----DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMM 115
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP--EVEHY 181
+A +F M N V++ +++S +G ++ ++ F + P V +
Sbjct: 116 DQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQLF-------EVAPVRSVVAW 164
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG----CKLHRNLEIAHIAVNELM 237
M+ K G +E A + + N V W A++ G C+ L++ V
Sbjct: 165 TAMITGFMKFGKIELAEKYFEEMPMK-NLVTWNAMIAGYIENCQAENGLKLFKRMVESG- 222
Query: 238 ILEPNNSGYCTLLL 251
PN S ++LL
Sbjct: 223 -FRPNPSSLSSVLL 235
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 203/323 (62%), Gaps = 1/323 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++W MI+ Y+ +EAL F +M+ G+ P+ ++ +L ACA L L G+EIH
Sbjct: 725 DLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIH 784
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF DV++ +AL+DMY+K SL + VF +++ K L WN +I G A+ G
Sbjct: 785 CLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGK 844
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EA+++F+ M V P+ +TF ++LSAC ++GL+ EG + F SM Y I P +EHY CM
Sbjct: 845 EAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCM 904
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL +AG L++A +LI + +P+A IWGALLG C++H+NL+ A A L LEPNNS
Sbjct: 905 VDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNS 964
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
L++N+Y+ +RW ++ +R M G+ R SWI++ ++V+ F++ +K HP +
Sbjct: 965 ANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNR-QVWSWIQINQRVHVFSSDEKPHPDA 1023
Query: 305 DEIYSSLSKLDEQLKLASYVPEL 327
+IY L +L ++K YVP++
Sbjct: 1024 GKIYFELYQLVSEMKKLGYVPDV 1046
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 109/201 (54%), Gaps = 2/201 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-AHLGALDL 59
MP + + W I Q+++ ++ ++ F +M+ S + + T+ VL A + LG L++
Sbjct: 584 MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNM 643
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+E H YV++ GFD DVY+G++L+DMY K SL + VF ++ +N+F WNS++ G +
Sbjct: 644 GKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSF 703
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G +AL + ++M E ++P+ VT+ ++S G +E F M + P
Sbjct: 704 KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQ-QEGVMPNSA 762
Query: 180 HYGCMVDLLSKAGLLEDALEL 200
C++ + LL+ E+
Sbjct: 763 SITCLLRACASLSLLQKGKEI 783
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 4 RDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
R+ + W + + + S L+ F E+ G+ D + L C + + LG E
Sbjct: 485 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 544
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN-SIIEGLAVHG 121
IH +++ GFD+DVY+ AL++ Y +C L+++ VF ++ WN +II L
Sbjct: 545 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 604
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSAC------------THAGLVEEGRR------ 163
+ + +F +M + ++ T + VL A TH ++ G
Sbjct: 605 L-QKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVG 663
Query: 164 --------RFLSMTCGYSITPEVEH-----YGCMVDLLSKAGLLEDALELIRSSK---FQ 207
+ S+T ++ +++ + +V S G+ EDAL L+ + +
Sbjct: 664 TSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 723
Query: 208 PNAVIWGALLGG 219
P+ V W ++ G
Sbjct: 724 PDLVTWNGMISG 735
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ + SW MI ++ +EA+ FNEM+ G+ PD +T +LSAC + G + G
Sbjct: 825 KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEG 881
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 209/329 (63%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGRE 62
+D+++W+ M++CYSQ A + F +M G+ P++ T+++ + ACA A +D GR+
Sbjct: 464 KDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ 523
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ + + +GSALV MYA+ GS+D + +VF + +++L WNS+I G A HG+
Sbjct: 524 FHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGY 583
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ EAL F +M +E +G TF++V+ CTHAGLV+EG++ F SM ++I+P +EHY
Sbjct: 584 SKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYS 643
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL S+AG L++ + LI F A++W LLG C++H+N+E+ +A +L++LEP+
Sbjct: 644 CMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPD 703
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YA RW E ++R M ++K G SWI+++ KV+ F A DKSHP
Sbjct: 704 DSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKE-AGCSWIQIKNKVHSFIACDKSHP 762
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
S++IY+ L + +LK Y P +L
Sbjct: 763 LSEQIYAKLKAMTTRLKQEGYCPNTSVVL 791
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 132/252 (52%), Gaps = 3/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT+++T Y Q + + + F M+ G+ P+ T +VLSA A GA+DLG
Sbjct: 161 MPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLG 220
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ G V++ ++L++MY+KCG ++ + VF ++ +++ WN+++ GL ++
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLN 280
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EAL +F + + T+ +V+ C + + R+ S + +
Sbjct: 281 EHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA-RQLHSCVLKHGFHSDGNV 339
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--I 238
++D SK G L+DA + N V W A++GGC + ++ +A + +
Sbjct: 340 MTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN 399
Query: 239 LEPNNSGYCTLL 250
++PN Y T+L
Sbjct: 400 VKPNEFTYSTVL 411
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 9/225 (4%)
Query: 1 MPARDIISWTT----MITCYSQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLG 55
MP+RD + ++ I Y + + R EALD F ++ G ++ VL C +
Sbjct: 55 MPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCG-RVQGAAVSRVLKVCGLIP 113
Query: 56 ALDLGREIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
G ++H ++ GFD +V +G+ALVDMY KCG ++ +VF + ++N+ W S++
Sbjct: 114 DRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLL 173
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G + +A+F RM E V PN TF SVLSA G V+ G RR + + +
Sbjct: 174 TGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLG-RRVHAQSVKFGC 232
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V ++++ SK GL+E+A + R + + + V W L+ G
Sbjct: 233 RSTVFVCNSLINMYSKCGLVEEAKAVFRQMETR-DMVSWNTLMAG 276
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 110/224 (49%), Gaps = 6/224 (2%)
Query: 1 MP-ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP +++++SWT MI QN A F+ M+ + P++ T +TVL+A + L
Sbjct: 363 MPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI----L 418
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH +++ + +G+AL+ Y+K G+ + +L +F + K++ W++++ +
Sbjct: 419 LPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQ 478
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A +F +M + ++PN T S + AC + R+F +++ Y +
Sbjct: 479 AGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAIC 538
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + ++ G + D+ ++ + + V W +++ G H
Sbjct: 539 VGSALVTMYARKGSI-DSARIVFERQTDRDLVSWNSMISGYAQH 581
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 197/326 (60%), Gaps = 1/326 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I+S T +I Y + Q +AL F +++ GI P++ T +++ ACA+ L+ G ++H
Sbjct: 344 IVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHG 403
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V++ F D ++ S LVDMY KCG D S+ +F ++ + WN+++ + HG
Sbjct: 404 QVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRN 463
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A+ F+ MI+ ++PN VTF+++L C+HAG+VE+G F SM Y + P+ EHY C++
Sbjct: 464 AIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVI 523
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245
DLL +AG L++A + I + F+PN W + LG CK+H ++E A A ++LM LEP NSG
Sbjct: 524 DLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSG 583
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
LL N+YA+ +W +V +R +K+ G + PG SW+++ K + F D SHP
Sbjct: 584 AHVLLSNIYAKEKQWEDVQSLRKMIKD-GNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKK 642
Query: 306 EIYSSLSKLDEQLKLASYVPELEAML 331
EIY L L +Q+K YVP+ E++L
Sbjct: 643 EIYEKLDNLLDQIKRIGYVPQTESVL 668
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 94/153 (61%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT++IT ++ N +F+EAL +F +M+ G Q +++VL AC LGA+ G
Sbjct: 136 MSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFG 195
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V++ GF ++++GS L DMY+KCG L + F ++ K+ W S+I+G +
Sbjct: 196 TQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKN 255
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
G +AL + +M+ ++V + S LSAC+
Sbjct: 256 GDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 12/210 (5%)
Query: 19 NKQFR----EALDAFNEMKN---SGIS-PDQVTMATVLSACAHLGALDLGREIHLYVMQI 70
NK F E + +F+ +KN SG D T+A ++ A L+ G+++H +++
Sbjct: 45 NKHFVLEGVEEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRG 104
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMF 130
G + ++ + +++Y+KCG LD ++ +F K+ ++N+ W SII G A + EAL+ F
Sbjct: 105 GCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSF 164
Query: 131 DRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLS 189
+M E SVL ACT G ++ G + L + CG+ E+ + D+ S
Sbjct: 165 CQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGC--ELFVGSNLTDMYS 222
Query: 190 KAGLLEDALELIRSSKFQPNAVIWGALLGG 219
K G L DA + + +AV+W +++ G
Sbjct: 223 KCGELSDACKAFEEMPCK-DAVLWTSMIDG 251
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D I+W T++ +SQ+ R A++ FN M + G+ P+ VT +L C+H G ++ G
Sbjct: 444 DEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYF 503
Query: 65 LYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGF 122
+ +I G S ++D+ + G L + + E N+F W S + +HG
Sbjct: 504 SSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGD 563
Query: 123 AHEALAMFDRMIYENVEPNG 142
A D+++ E +G
Sbjct: 564 MERAKFAADKLMKLEPENSG 583
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 208/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M R + SW+ +IT ++ + + L +M N G ++ + +VLSAC HLGALDL
Sbjct: 149 MNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDL 208
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR +H ++++ ++V + ++L++MY KCG L + + +F K+ +KN ++ +I GLA+
Sbjct: 209 GRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAM 268
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG+ E L +F M+ + +EP+ + ++ VL+AC+HAGLV+EG + F M + I P ++
Sbjct: 269 HGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQ 328
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL+ +AG +++ALELI+S +PN V+W +LL K+H NL+ IA +L L
Sbjct: 329 HYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKL 388
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ + +L NMYA+ RW +V + R M G+ +R PG S +E++RK+++F + D
Sbjct: 389 DSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQR-PGFSLVEVKRKMHRFVSQDA 447
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S+ +Y L +++ QLK Y P+ +L
Sbjct: 448 GHPQSESVYEMLYQMEWQLKFEGYXPDTTQVL 479
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 9/219 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ + ++ EAL + EM G+ PD T T+L ACA L A++ G ++H +++
Sbjct: 56 FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 115
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G + DV++ ++L+ MY KCG + VF ++ E+++ W+++I A G + L
Sbjct: 116 KLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLR 175
Query: 129 MFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITPEVEHYGCM 184
+ M E +SVLSACTH G ++ GR L G ++ E +
Sbjct: 176 LLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETS----L 231
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+++ K G L + L + + N + + ++ G +H
Sbjct: 232 IEMYLKCGXLYKGMCLFQKMA-KKNKLSYSVMISGLAMH 269
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++ H +++ G D + S LV A GS+D + +F ++ E F +N+++ G
Sbjct: 5 KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
EAL + M V+P+ T+ ++L AC VEEG
Sbjct: 65 KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEG 107
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 189/302 (62%), Gaps = 1/302 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+ SW MIT Y+QN EAL ++M G+ PD T+ +VL+AC+ L +L G
Sbjct: 187 IPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG 246
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ H+ V++ G++ + I +AL+ MY KCGS+ S L F ++ ++ WN++I A H
Sbjct: 247 RKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARH 306
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ALA F M VEP+G+TF+S+LSAC HAG V E F SM Y I P EH
Sbjct: 307 GFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEH 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C+VD+LS+ G +E A ++I+ F+ + IWGALL C +H N+++ +A +++ LE
Sbjct: 367 FACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELE 426
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+YA W EVT++R M+E G++K+ P SW+E++ KV+ F D S
Sbjct: 427 PQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQ-PAYSWMEIDNKVHFFLGDDAS 485
Query: 301 HP 302
HP
Sbjct: 486 HP 487
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 137/316 (43%), Gaps = 81/316 (25%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++SWT MI+ Y +N +F EA + F +M PD+ +A
Sbjct: 125 MPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIVAM-------------- 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+A++ Y K G D++ ++F ++ ++L WN++I G A +
Sbjct: 165 -------------------TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQN 205
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYS------ 173
G EAL + +M+ ++P+ T ISVL+AC+ ++EGR+ L + GY
Sbjct: 206 GSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISIC 265
Query: 174 ---IT--------------------PEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
IT P+V + M+ ++ G + AL +RS++ +
Sbjct: 266 NALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVE 325
Query: 208 PNAVIWGALLGGC----KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
P+ + + +LL C K+H +L + + I+ C + + +SR +V
Sbjct: 326 PDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDI-----LSRGGQV 380
Query: 264 TKIRVAMKELGIEKRC 279
K ++E+ E C
Sbjct: 381 EKAYKIIQEMPFEADC 396
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
D ++++ Y K G D S +F + KN+ WNS+I G EA F M
Sbjct: 5 DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 64
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
N ++ +++S VEE R F M I+ Y MVD +K G +
Sbjct: 65 QRNT----ASWNAMISGLVRYDRVEEASRLFEEMPRRNVIS-----YTAMVDGYAKIGEI 115
Query: 195 EDALELIRSSKFQPNAVIWGALLGG 219
E A L + Q N V W ++ G
Sbjct: 116 EQARALF-NCMPQKNVVSWTVMISG 139
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++SW TMI Q F EA+D EM+N GI D+VTM + SAC +LGALDL
Sbjct: 416 MPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLA 475
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ I+ Y+ + ID+ +G+ALVDM+++CG ++ VF + ++++ W + I AV
Sbjct: 476 KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVE 535
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A+ +FD M+ ++V+ + F+++L+A +H G V++GR+ F +M + ++P++ H
Sbjct: 536 GNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVH 595
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AGLLE+A +L++S +PN VIWG+ L C+ H+N+E A+ A ++ L
Sbjct: 596 YGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLA 655
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL N+YA +W +V ++R+ MKE G +K GSS IE+ + +F + D+S
Sbjct: 656 PEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQK-VAGSSSIEVHGLIREFTSGDES 714
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H + +I L +++ ++ YVP+ +L
Sbjct: 715 HTENAQIGLMLQEINCRISQVGYVPDTTNVL 745
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 13/280 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT++I YS +EA+ F EM G+ P+ VTM +SACA L L+LG
Sbjct: 183 MLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELG 242
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++ + ++G + + +AL+DMY KCG + +F + +KNL +N+I+ H
Sbjct: 243 KKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQH 302
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A E L + D M+ + P+ VT +S ++AC G + G+ Y +E
Sbjct: 303 GLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSH-----AYVFRNGLER 357
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ K G E A ++ S V W +L+ G LE+A E+
Sbjct: 358 LDNISNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELALRIFGEM 416
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
E N + T++ M + S + E + M+ GI+
Sbjct: 417 P--ESNLVSWNTMIGAM-VQASMFEEAIDLLREMQNQGIK 453
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 10 TTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
T+I Y+ + +EA+ + M GI PD T +LSAC+ + A G ++H V+
Sbjct: 90 NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVV 149
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G D+++ ++L+ YA CG +D VF ++ E+N+ W S+I G +V A EA+
Sbjct: 150 KMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVC 209
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
+F M+ VEPN VT + +SAC +E G++
Sbjct: 210 LFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKK 244
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ + T+++ Y Q+ E L +EM G PD+VTM + ++ACA LG L +G+
Sbjct: 287 KNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSS 346
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGS-------------------------------L 92
H YV + G + I +A++DMY KCG L
Sbjct: 347 HAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGEL 406
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ +L +F ++ E NL WN++I + EA+ + M + ++ + VT + + SAC
Sbjct: 407 ELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASAC 466
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
+ G ++ + + + I +++ +VD+ S+ G D L +R
Sbjct: 467 GYLGALDLAKWIYTYIE-KNDIHIDMQLGTALVDMFSRCG---DPLNAMR 512
>gi|357119982|ref|XP_003561711.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Brachypodium distachyon]
Length = 555
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 208/331 (62%), Gaps = 4/331 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW +MI ++ ++A+ F+ + NSG+ PD + ++VLSACA GAL G
Sbjct: 146 MPVKDVVSWNSMIAGAVRSSHLKDAMILFSRLVNSGLVPDGFSFSSVLSACARAGALFYG 205
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + ++G + + + SALVDMYAKCG +D S+ +F ++ ++ WN++I LA H
Sbjct: 206 VWVHRLMAELGVEKNNILISALVDMYAKCGRIDVSVEIFNTVKRNHVPMWNTMIGSLAAH 265
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + + +F RM + V P+GVTF+++L+AC+H G+VEE R+ F +MT Y ITP+VEH
Sbjct: 266 GLGQDVVVLFHRMEHAGVVPDGVTFVALLTACSHCGMVEEARQYFEAMTTKYYITPKVEH 325
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVD LS+AGLL++A L+RS +P+AVIW ALL C+ H ++ I + +++
Sbjct: 326 YGAMVDTLSRAGLLDEAYNLVRSMVVKPDAVIWRALLSACRRHHQTKLGEITIEQMVC-- 383
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
SG TLL N+Y+ ++RW + + K+ + K G SW+E+ ++F A D+S
Sbjct: 384 -QGSGDYTLLSNIYSSINRWVDSENVWKERKKKKVRKN-KGLSWVELGGSTHEFKAGDRS 441
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +D+IY L L ++ K Y P E ++
Sbjct: 442 HPDTDDIYRVLHGLSKKAKAEGYSPSTELVM 472
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
A+ + + G+ +Q +A +L + RE L+ + + + D + G+ ++
Sbjct: 71 AMQIHSRLTKVGLLRNQHIIAPLLRLYIDYDCMTEARE--LFWLMLEWSTDPFHGNLMLT 128
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
+ K G LD++ +F ++ K++ WNS+I G +A+ +F R++ + P+G +
Sbjct: 129 GFLKGGQLDKAYQIFKRMPVKDVVSWNSMIAGAVRSSHLKDAMILFSRLVNSGLVPDGFS 188
Query: 145 FISVLSACTHAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
F SVLSAC AG + G R ++ + +VD+ +K G ++ ++E+
Sbjct: 189 FSSVLSACARAGALFYGVWVHRLMA---ELGVEKNNILISALVDMYAKCGRIDVSVEIFN 245
Query: 203 SSKFQPNAVIWGALLGGCKLH 223
+ K + + +W ++G H
Sbjct: 246 TVK-RNHVPMWNTMIGSLAAH 265
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 197/314 (62%), Gaps = 2/314 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW ++I+ Y +Q +A F M GI+PD+ T ATVL CA+L + LG++IH
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ DVYI S LVDMY+KCG L S L+F K ++ WN++I G A HG EA
Sbjct: 587 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 646
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ +F+RMI EN++PN VTFIS+L AC H GL+++G F M Y + P++ HY MVD
Sbjct: 647 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 706
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR-NLEIAHIAVNELMILEPNNSG 245
+L K+G ++ ALELIR F+ + VIW LLG C +HR N+E+A A L+ L+P +S
Sbjct: 707 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 766
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
TLL N+YA+ W +V+ +R M+ ++K PG SW+E++ +++ F DK+HP +
Sbjct: 767 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKE-PGCSWVELKDELHVFLVGDKAHPRWE 825
Query: 306 EIYSSLSKLDEQLK 319
EIY L + ++K
Sbjct: 826 EIYEELGLIYSEMK 839
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 43/274 (15%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S+ MIT YSQ + +AL F+ + +SG+ D+++++ V ACA + L G +I+
Sbjct: 307 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 366
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ +DV + +A +DMY KC +L + VF ++R ++ WN+II +G +E L
Sbjct: 367 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 426
Query: 128 AMFDRMIYENVEPNGVTFISVLSACT----------HAGLVEEGRRRFLSMTCGYSITPE 177
+F M+ +EP+ TF S+L ACT H+ +V+ G S+ C
Sbjct: 427 FLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCS------ 480
Query: 178 VEHYGCMVDLLSKAGLLEDA-------------------LELIRSSKFQPNAVIWGALLG 218
++D+ SK G++E+A LE + + + Q V W +++
Sbjct: 481 ------LIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIIS 534
Query: 219 GCKLHRNLEIAHIAVNELMIL--EPNNSGYCTLL 250
G + E A + +M + P+ Y T+L
Sbjct: 535 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVL 568
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M++ Y QN + ++++ F +M GI D T A +L C+ L LG
Sbjct: 98 MPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLG 157
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G D DV SAL+DMYAK SL VF + EKN W++II G +
Sbjct: 158 MQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 217
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
AL F M N + + SVL +C
Sbjct: 218 NLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 25/253 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK--NSGISPDQVTMATVLSACAHLGALD 58
+P ++ +SW+ +I QN AL F EM+ N+G+S Q A+VL +CA L L
Sbjct: 199 IPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVS--QSIYASVLRSCAALSELR 256
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG ++H + ++ F D + +A +DMYAKC ++ + ++F N +N++I G +
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 316
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+AL +F R++ + + ++ V AC + EG + + + S++ +V
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDV 375
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+D+ K L +A + + + +AV W A++ AH
Sbjct: 376 CVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIA----------AH-------- 416
Query: 239 LEPNNSGYCTLLL 251
E N GY TL L
Sbjct: 417 -EQNGKGYETLFL 428
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ++W MI Y+ + + EA+ F M I P+ VT ++L ACAH+G +D G E
Sbjct: 625 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE- 683
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+ Y+M+ + +D + S +VD+ K G + R+L + ++ E + W +++ +H
Sbjct: 684 YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIH 743
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 51/219 (23%)
Query: 51 CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE---- 104
CA GAL+LG++ H +++ GF ++ + L+ +Y + +VF K LR+
Sbjct: 16 CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75
Query: 105 -------------------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+++ WNS++ G +G + +++ +F M E +E
Sbjct: 76 NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTC-GYSITPEVEHYGCMVDLLSKAGLLE--- 195
+G TF +L C+ FL T G I V GC D+++ + LL+
Sbjct: 136 FDGRTFAIILKVCS-----------FLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYA 184
Query: 196 ---DALELIRSSKFQP--NAVIWGALLGGCKLHRNLEIA 229
+E +R + P N+V W A++ GC + L +A
Sbjct: 185 KGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLA 223
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 202/332 (60%), Gaps = 23/332 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DIISW TMI E+K PD TMA +L ACA L AL+ G
Sbjct: 413 MVVKDIISWNTMI----------------GELK-----PDSRTMACILPACASLSALERG 451
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G+ D ++ +ALVD+Y KCG L + L+F + K+L W +I G +H
Sbjct: 452 KEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMH 511
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +EA+A F+ M +EP+ V+FIS+L AC+H+GL+E+G R F M ++I P++EH
Sbjct: 512 GYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEH 571
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+ G L A E I + P+A IWGALL GC+++ ++E+A + LE
Sbjct: 572 YACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELE 631
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF-AASDK 299
P N+GY LL N+YAE +W EV ++R + + G+ K PG SWIE++ KV F + ++
Sbjct: 632 PENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKN-PGCSWIEIKGKVNLFVSGNNS 690
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S +I S L K+ ++K Y P+ + L
Sbjct: 691 SHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL 722
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 6/220 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +MI+ Y N L+ + +M GI D T+ +VL CA+ G L LG+ +
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ F+ + + L+DMY+KCG LD +L VF K+ E+N+ W S+I G G +
Sbjct: 274 HSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRS 333
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ + +M E V+ + V S+L AC +G ++ G+ + E + C
Sbjct: 334 DGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN---NMESNLFVC 390
Query: 184 --MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
++D+ +K G + D + S+ + + W ++G K
Sbjct: 391 NALMDMYTKCGSM-DGANSVFSTMVVKDIISWNTMIGELK 429
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 33/256 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT+MI Y+++ + A+ +M+ G+ D V ++L ACA G+LD G
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNG 371
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ + ++++ +AL+DMY KCGS+D + VF + K++ WN++I L
Sbjct: 372 KDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGEL--- 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+P+ T +L AC +E G+ + GYS V
Sbjct: 429 ------------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA 470
Query: 180 HYGCMVDLLSKAGLLEDA---LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ +VDL K G+L A ++I S + V W ++ G +H A NE+
Sbjct: 471 N--ALVDLYVKCGVLGLARLLFDMIPSK----DLVSWTVMISGYGMHGYGNEAIATFNEM 524
Query: 237 MI--LEPNNSGYCTLL 250
+EP+ + ++L
Sbjct: 525 RDAGIEPDEVSFISIL 540
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
++++++ + +K + + +K++ ++ D+V ++S A G L GR +
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV---- 156
Query: 68 MQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFF--------------------KLR 103
FD +VY+ + +V YAK G S+ +F KL
Sbjct: 157 ----FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLC 212
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163
++++ WNS+I G +G L ++ +M+Y ++ + T ISVL C ++G + G +
Sbjct: 213 DRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-K 271
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
S+ + + ++D+ SK G L+ AL + + N V W +++ G
Sbjct: 272 AVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 203/330 (61%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW TMI YS + EAL F M S + P+ VT +L ACA LGALDLG+ +
Sbjct: 327 KDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWV 386
Query: 64 HLYV-MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H Y+ + + + ++L+DMYAKCG ++ + VF + +NL WN+++ G A+HG
Sbjct: 387 HAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGH 446
Query: 123 AHEALAMFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A ALA+F M+ + + P+ +TF+ VLSACT AGLV+ G + F SM Y I+P+++HY
Sbjct: 447 AERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHY 506
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCM+DLL++A E+A L+++ + +P+ IWG+LL CK H +E L LEP
Sbjct: 507 GCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEP 566
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
N+G LL N+YA RW +V +IR + + G+ K+ PG + IE++ V++F DK H
Sbjct: 567 ENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGM-KKVPGCTSIEIDGDVHEFLVGDKFH 625
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P + IY L+++D+ L+ +VP +L
Sbjct: 626 PECNNIYKMLNEVDKLLEENGFVPNTSEVL 655
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 141/253 (55%), Gaps = 4/253 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y Q+ +F EA+ F EM+ + + P++ TM VLSAC H + +LG
Sbjct: 223 IPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELG 282
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ I +V GF ++ + +AL+DMY KCG D + +F + EK++ WN++I G +
Sbjct: 283 KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYL 342
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EALA+F+ M+ NV+PN VTF+ +L AC G ++ G+ + +
Sbjct: 343 SLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASL 402
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--- 237
+ ++D+ +K G +E A + RS + N W A+L G +H + E A +E++
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAERALALFSEMVNKG 461
Query: 238 ILEPNNSGYCTLL 250
+ P++ + +L
Sbjct: 462 LFRPDDITFVGVL 474
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 37/281 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ W ++I YS + +L F+ M G+ P+ T + +C A G+++
Sbjct: 94 HNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQL 153
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE----------------- 104
H + +++ + ++ ++++ MYA G +D + LVF K LR+
Sbjct: 154 HAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCL 213
Query: 105 ------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
K++ WN++I G G EA+ F M NV PN T + VLSAC
Sbjct: 214 DDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSAC 273
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
H E G + S ++ ++D+ K G + A EL + + + +
Sbjct: 274 GHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE-EKDVIS 331
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
W ++GG E A +A+ E+M+ ++PN+ + +L
Sbjct: 332 WNTMIGGYSYLSLYEEA-LALFEVMLRSNVKPNDVTFLGIL 371
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M +R++ SW M++ ++ + AL F+EM N G+ PD +T VLSAC G +DL
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485
Query: 60 GREIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
G + ++Q G + ++D+ A+ + + ++ + E + W S++
Sbjct: 486 GHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSAC 545
Query: 118 AVHG 121
HG
Sbjct: 546 KAHG 549
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 202/326 (61%), Gaps = 4/326 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
R +++WT +I +Q+ + EAL+ F++M ++ + P+ T++ L ACA LGAL GR
Sbjct: 459 RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 518
Query: 62 EIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH YV++ F+ +++ + L+DMY+K G +D + +VF + ++N W S++ G +H
Sbjct: 519 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 578
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M + P+GVTF+ VL AC+H+G+V++G F M + + P EH
Sbjct: 579 GRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 638
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+AG L++A+ELIR +P +W ALL C+++ N+E+ A N+L+ LE
Sbjct: 639 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 698
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G TLL N+YA W +V +IR MK GI+KR PG SW++ + F A D S
Sbjct: 699 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKR-PGCSWVQGRKGTATFFAGDWS 757
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S +IY L L +++K YVP+
Sbjct: 758 HPMSQQIYDLLRDLMQRIKALGYVPD 783
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D++SW +++ Y Q A+ F M ++ GI PD V++ VL ACA +GA G+++
Sbjct: 213 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 272
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y ++ G DV++G+A+VDMYAKCG ++ + VF +++ K++ WN+++ G + G
Sbjct: 273 HGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRF 332
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCG 171
+AL +F+++ E +E N VT+ +V++ GL E F M CG
Sbjct: 333 DDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG 381
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 12/230 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++++W+ +I Y+Q EALD F +M G P+ VT+ ++LS CA G L G+E H
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409
Query: 65 LYVMQIGFDI-------DVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSIIE 115
+ ++ ++ D+ + +AL+DMY+KC S R++ +++++ W +I
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469
Query: 116 GLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
G A HG A+EAL +F +M+ + V PN T L AC G + GR+ +
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + C++D+ SK+G + DA ++ + Q N V W +L+ G +H
Sbjct: 530 ESAMLFVANCLIDMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMH 578
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 15/227 (6%)
Query: 2 PARDIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P+ + W + S + F E L + M+ G PD T VL AC + + G
Sbjct: 105 PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGL 117
+H V GF+ +V++G+ LV MY +CG+ + + VF ++RE+ +L WNSI+
Sbjct: 165 ASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224
Query: 118 AVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
G + A+ MF+RM + + P+ V+ ++VL AC G G++ GY++
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ-----VHGYALRS 279
Query: 177 ----EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V +VD+ +K G++E+A ++ K + + V W A++ G
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 325
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SWT+++T Y + + EAL F EM+ + PD VT VL AC+H G +D G
Sbjct: 560 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQG 619
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRSL 96
Y + D V G + +VD+ ++ G LD ++
Sbjct: 620 IN---YFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAM 656
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 200/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI Y N QF +A+ F M G P T+ +VLSA + L L G
Sbjct: 218 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y+ + GF++D +G++L++MYAKCG ++ +L VF +++K + W +II GL +H
Sbjct: 278 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ ALA+F M ++PN + FI VL+AC HAGLV++GR+ F M Y I P +EH
Sbjct: 338 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 397
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+L +AG LE+A I + PN VIW +LLGG + H ++I A ++ +
Sbjct: 398 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 457
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL NMYA W +V+ +R M + G K PG S +E + +++F D S
Sbjct: 458 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKD-PGCSSVEHKGTLHEFIVGDIS 516
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY+ +S++ E+LK +VP+ +L
Sbjct: 517 HPQTKEIYAKMSEMKEKLKCVGHVPDTTQVL 547
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 53/266 (19%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R +I W T+I CY +N+ + + F+E+ + + PD T+ V+ CA LG + G++I
Sbjct: 79 RSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQI 137
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV---- 119
H ++IGF DV++ +LV+MY+KCG +D + VF + +K++ WNS+I+G V
Sbjct: 138 HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNA 197
Query: 120 --------------------------------------HGFAHEALAMFDRMIYENVEPN 141
+G +A+ MF M+ P+
Sbjct: 198 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPS 257
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----CMVDLLSKAGLLEDA 197
T +SVLSA + GL G+ R++ Y E G ++++ +K G +E A
Sbjct: 258 HATLVSVLSAVS--GLAVLGKGRWIH---SYMEKNGFELDGILGTSLIEMYAKCGCIESA 312
Query: 198 LELIRSSKFQPNAVIWGALLGGCKLH 223
L + R+ + + W A++ G +H
Sbjct: 313 LTVFRAIQ-KKKVGHWTAIIVGLGIH 337
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++H + ++ ++ S L+ +Y+ K L + +F +++ ++L WN+II+
Sbjct: 34 QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 93
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+ F+H+ + +F +++E + P+ T V+ C G+V+EG++ L++ G+ V
Sbjct: 94 NQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFV 152
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ G +V++ SK G + D + + V+W +L+ G
Sbjct: 153 Q--GSLVNMYSKCGEI-DCARKVFDGMIDKDVVLWNSLIDG 190
>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Brachypodium distachyon]
Length = 884
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 211/334 (63%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALD 58
M +D ++W +ITCY++NK+ ++ L F+EM+ S + PD+VT +L AC LGALD
Sbjct: 469 MVMKDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALD 528
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G +I Y ++ G+ ++ + ++++ MY +CG ++++ VF +K++ W+++I GLA
Sbjct: 529 FGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLA 588
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+GF +A++ F+ M V P+G TF VLSAC+H+GLV+EG R F M Y + P V
Sbjct: 589 ANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNV 648
Query: 179 EHYGCMVDLLSKAGLLEDALEL-IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
HYGC+VDL+ +AGLL++A EL ++ K P+A IW LLG C++H ++++ ++ L+
Sbjct: 649 RHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLI 708
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN YA W +V ++R M+E I+ PG + +E+ ++++F A
Sbjct: 709 ELKAQQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQT-TPGCTTVELNGELHEFIAD 767
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP EIY L +++ L++A YVP + + L
Sbjct: 768 DASHPRKAEIYGKLDEINRHLRIAGYVPHVSSDL 801
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI 70
+++ C S++ +AL M+ G + ++A +L C L R++H V+
Sbjct: 385 SILRCLSES----DALSFLRRMRTLGRRGNAFSLAILLKPCR---TLSHARQLHANVVIE 437
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMF 130
G D + ++L+ YA CG D + VF ++ K+ WN +I A + + L +F
Sbjct: 438 GHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRTKDTLWLF 497
Query: 131 DRMIY--ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH-YGC---- 183
D M V+P+ VT I +L ACT G ++ G + + Y+ VEH YGC
Sbjct: 498 DEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIW-----EYA----VEHGYGCELKV 548
Query: 184 ---MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + ++ G +E A ++ + Q + V W A++ G
Sbjct: 549 RNSVITMYTRCGCVEKAYQVFCHTP-QKSVVTWSAMIMG 586
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 205/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M + + SW+++I ++ + + E L +M G ++ + + LSAC HLG+ +L
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNL 251
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH +++ +++V + ++L+DMY KCGSL++ L VF + KN + + +I GLA+
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +F M+ E + P+ V ++ VLSAC+HAGLV+EG + F M + I P ++
Sbjct: 312 HGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQ 371
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL+ +AG+L++A +LI+S +PN V+W +LL CK+H NLEI IA + + L
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKL 431
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+N G +L NMYA +WA V +IR M E + + PG S +E R VY+F + DK
Sbjct: 432 NKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNL-VQTPGFSLVEANRNVYKFVSQDK 490
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
S P + IY + +++ QLK Y P++ +L
Sbjct: 491 SQPQCETIYDMIQQMEWQLKFEGYTPDMSQVL 522
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI + EAL + EM GI PD T VL AC+ L AL G +IH +V
Sbjct: 99 YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
G ++DV++ + L+ MY KCG+++ + +VF ++ EK++ W+SII A HE L
Sbjct: 159 NAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218
Query: 129 MFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGR 162
+ M E +S LSACTH G GR
Sbjct: 219 LLGDMSREGRHRAEESILVSALSACTHLGSPNLGR 253
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+++H +++++G D + GS LV A + GS++ + +F ++ E F +N++I G
Sbjct: 48 KKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNV 107
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
EAL ++ M+ +EP+ T+ VL AC+ +++ G I V
Sbjct: 108 NSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACS----------LLVALKEGVQIHAHV 157
Query: 179 EHYGCMVDLLSKAGLL 194
+ G VD+ + GL+
Sbjct: 158 FNAGLEVDVFVQNGLI 173
>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 830
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 204/324 (62%), Gaps = 2/324 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGRE 62
+D++SW+ M+TCY+Q A +AF +M G+ P++ T+++ + ACA A +DLGR+
Sbjct: 420 KDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQ 479
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ + + SALV MYA+ GS++ + VF + +++L WNS++ G A HG+
Sbjct: 480 FHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGY 539
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ +AL +F +M E ++ +G+TF+SV+ C HAGLVEEG++ F M Y ITP ++HY
Sbjct: 540 SQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYA 599
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL S+AG L++ + LI F IW ALLG C++H+N+E+ +A +L+ LEP
Sbjct: 600 CMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPL 659
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+Y+ +W E ++R M + K G SWI+++ KV+ F ASDKSHP
Sbjct: 660 DSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKE-AGCSWIQIKNKVHFFIASDKSHP 718
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
S++IY+ L + +LK Y P+
Sbjct: 719 LSEQIYAKLRAMTAKLKQEGYCPD 742
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 131/255 (51%), Gaps = 9/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++WT+++T Y Q + + F M+ G+ P+ T ++VLS A G +DLG
Sbjct: 117 MLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG 176
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ G V++ ++L++MYAKCG ++ + +VF ++ +++ WN+++ GL ++
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLN 236
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT---HAGLVEEGRRRFLSMTCGYSITPE 177
G EAL +F T+ +V++ C H GL R+ S +
Sbjct: 237 GRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLA----RQLHSSVLKHGFHSY 292
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
++D +KAG L+ AL++ N V W A++ GC + ++ +A + +
Sbjct: 293 GNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMR 352
Query: 238 --ILEPNNSGYCTLL 250
+ PN+ Y T+L
Sbjct: 353 EDGVAPNDLTYSTIL 367
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 145/331 (43%), Gaps = 38/331 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+++++SWT MI QN A F+ M+ G++P+ +T +T+L+ + +
Sbjct: 322 SQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEASFPPQ 377
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V++ ++ +G+AL+ Y+K S + +L +F + +K++ W++++ A G
Sbjct: 378 IHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGD 437
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ A F +M ++PN T S + AC + R+F +++ + +
Sbjct: 438 CNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSS 497
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
+V + ++ G +E+A + + + + + W ++L G H
Sbjct: 498 ALVSMYARKGSIENA-QCVFERQTDRDLLSWNSMLSGYAQH------------------- 537
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRV-AMKELGIEKRCPGSSWIEMERKVYQFAASDKS- 300
GY L+++ R EV I + + L + C + +E ++ + D
Sbjct: 538 --GYSQKALDVF----RQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGI 591
Query: 301 HPASD------EIYSSLSKLDEQLKLASYVP 325
P D ++YS KLDE + L +P
Sbjct: 592 TPTMDHYACMVDLYSRAGKLDETMSLIEGMP 622
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
Query: 24 EALDAF-NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI-DVYIGSA 81
+ALD F + + G + ++ C + LG+++H ++ G D D+ +G++
Sbjct: 37 QALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTS 96
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
LVDMY S+ VF + ++N+ W S++ G G + +++F RM E V PN
Sbjct: 97 LVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPN 156
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
TF SVLS G+V+ G + + + + V ++++ +K GL+E+A ++
Sbjct: 157 PFTFSSVLSMVASQGMVDLG-QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEA-RVV 214
Query: 202 RSSKFQPNAVIWGALLGGCKLH-RNLE 227
+ V W L+ G L+ R+LE
Sbjct: 215 FCRMETRDMVSWNTLMAGLVLNGRDLE 241
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 197/315 (62%), Gaps = 2/315 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++SW MI+ Y + + EAL F +M+ +G+ PD +T +VL AC+ L L+ G
Sbjct: 561 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 620
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ +I+ + AL+DMYAKCG++D +L +F +L E++ W S+I H
Sbjct: 621 KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSH 680
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F++M + +P+ VTF+++LSAC+HAGLV+EG F M Y P VEH
Sbjct: 681 GQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH 740
Query: 181 YGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
Y C++DLL + G L +A E++ R+ + + + L C LH+ L++ L+
Sbjct: 741 YSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEK 800
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P++ +L NMYA V +W EV K+R+ +KELG++K PG SWIE+ ++++ F DK
Sbjct: 801 DPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN-PGCSWIEVGKRIHPFVVEDK 859
Query: 300 SHPASDEIYSSLSKL 314
SHP +D IY +S L
Sbjct: 860 SHPQADMIYECMSIL 874
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW +I+CY Q+ Q +AL+ F EMK SG PD VT+ TV+S+CA L L+ G
Sbjct: 359 MPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERG 418
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH+ +++ GF +D ++ SALVDMY KCG L+ + VF +++ KN+ WNS+I G ++
Sbjct: 419 KEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLK 478
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + + +F RM E + P T S+L AC+ + ++ G+ GY I VE
Sbjct: 479 GDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGK-----FIHGYIIRNRVEA 533
Query: 181 ----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL K G + A E + + + N V W ++ G
Sbjct: 534 DIFVNSSLIDLYFKCGNIGSA-ENVFQNMPKTNVVSWNVMISG 575
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 120/224 (53%), Gaps = 10/224 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++SW +MI YS + ++ F M GI P T++++L AC+ L LG+ I
Sbjct: 463 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 522
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ + D+++ S+L+D+Y KCG++ + VF + + N+ WN +I G G
Sbjct: 523 HGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSY 582
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE---- 179
EAL +F M V+P+ +TF SVL AC+ ++E+G+ + I ++E
Sbjct: 583 LEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE-----IHNFIIESKLEINEV 637
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G ++D+ +K G +++AL + + + V W +++ H
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSH 680
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 5/220 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGREI 63
DI W ++ ++N F E L+ F+ + + + PD T +VL AC+ LG + G+ +
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 320
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +V++ GF +DV + S+ V MYAKC + ++ +F ++ E+++ WN++I G
Sbjct: 321 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQP 380
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYG 182
+AL +F+ M +P+ VT +V+S+C +E G+ + + G+++ V
Sbjct: 381 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS--S 438
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
+VD+ K G LE A E+ + + N V W +++ G L
Sbjct: 439 ALVDMYGKCGCLEMAKEVFEQIQ-RKNVVSWNSMIAGYSL 477
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGL 117
LG+ IH ++ +G ++ + +L+++Y C + LVF + ++ WN ++
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272
Query: 118 AVHGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSIT 175
+ E L +F R++ + ++P+ T+ SVL AC+ G V G+ + G+++
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAM- 331
Query: 176 PEVEHYGCMVDLLSKAGLLEDALEL 200
+V V + +K + EDA++L
Sbjct: 332 -DVVVMSSAVGMYAKCNVFEDAIKL 355
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 197/314 (62%), Gaps = 2/314 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW ++I+ Y +Q +A F M GI+PD+ T ATVL CA+L + LG++IH
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ DVYI S LVDMY+KCG L S L+F K ++ WN++I G A HG EA
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 688
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ +F+RMI EN++PN VTFIS+L AC H GL+++G F M Y + P++ HY MVD
Sbjct: 689 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 748
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR-NLEIAHIAVNELMILEPNNSG 245
+L K+G ++ ALELIR F+ + VIW LLG C +HR N+E+A A L+ L+P +S
Sbjct: 749 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 808
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
TLL N+YA+ W +V+ +R M+ ++K PG SW+E++ +++ F DK+HP +
Sbjct: 809 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKE-PGCSWVELKDELHVFLVGDKAHPRWE 867
Query: 306 EIYSSLSKLDEQLK 319
EIY L + ++K
Sbjct: 868 EIYEELGLIYSEMK 881
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 43/274 (15%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S+ MIT YSQ + +AL F+ + +SG+ D+++++ V ACA + L G +I+
Sbjct: 349 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 408
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ +DV + +A +DMY KC +L + VF ++R ++ WN+II +G +E L
Sbjct: 409 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 468
Query: 128 AMFDRMIYENVEPNGVTFISVLSACT----------HAGLVEEGRRRFLSMTCGYSITPE 177
+F M+ +EP+ TF S+L ACT H+ +V+ G S+ C
Sbjct: 469 FLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCS------ 522
Query: 178 VEHYGCMVDLLSKAGLLEDA-------------------LELIRSSKFQPNAVIWGALLG 218
++D+ SK G++E+A LE + + + Q V W +++
Sbjct: 523 ------LIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIIS 576
Query: 219 GCKLHRNLEIAHIAVNELMIL--EPNNSGYCTLL 250
G + E A + +M + P+ Y T+L
Sbjct: 577 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVL 610
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M++ Y QN + ++++ F +M GI D T A +L C+ L LG
Sbjct: 140 MPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G D DV SAL+DMYAK SL VF + EKN W++II G +
Sbjct: 200 MQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 259
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
AL F M N + + SVL +C
Sbjct: 260 NLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 291
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 21/251 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ +SW+ +I QN AL F EM+ Q A+VL +CA L L LG
Sbjct: 241 IPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLG 300
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F D + +A +DMYAKC ++ + ++F N +N++I G +
Sbjct: 301 GQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQE 360
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL +F R++ + + ++ V AC + EG + + + S++ +V
Sbjct: 361 EHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCV 419
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+D+ K L +A + + + +AV W A++ AH E
Sbjct: 420 ANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIA----------AH---------E 459
Query: 241 PNNSGYCTLLL 251
N GY TL L
Sbjct: 460 QNGKGYETLFL 470
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ++W MI Y+ + + EA+ F M I P+ VT ++L ACAH+G +D G E
Sbjct: 667 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE- 725
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+ Y+M+ + +D + S +VD+ K G + R+L + ++ E + W +++ +H
Sbjct: 726 YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIH 785
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 56/269 (20%)
Query: 3 ARDIISWTTMITCYSQNKQFRE--ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
R ++S+ C ++ +R + F + N S + V CA GAL+LG
Sbjct: 11 TRSVVSFNR---CLTEKISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELG 67
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE-------------- 104
++ H +++ GF ++ + L+ +Y + +VF K LR+
Sbjct: 68 KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 127
Query: 105 ---------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+++ WNS++ G +G + +++ +F M E +E +G TF +L
Sbjct: 128 NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 187
Query: 150 SACTHAGLVEEGRRRFLSMTC-GYSITPEVEHYGCMVDLLSKAGLLE------DALELIR 202
C+ FL T G I V GC D+++ + LL+ +E +R
Sbjct: 188 KVCS-----------FLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR 236
Query: 203 SSKFQP--NAVIWGALLGGCKLHRNLEIA 229
+ P N+V W A++ GC + L +A
Sbjct: 237 VFQGIPEKNSVSWSAIIAGCVQNNLLSLA 265
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 197/325 (60%), Gaps = 5/325 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM---KNSGISPDQVTMATVLSACAHLGAL 57
MP RD++SW T++ Y + REAL F +M + + P+ TM+T+L ACA G L
Sbjct: 208 MPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 267
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEG 116
+ G +H Y+ + + D Y+ L+DMY KCGS+D +L VF K R+++LF W ++I G
Sbjct: 268 ETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICG 327
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA+HG A +AL MFD M + P+ VT + VL+AC H GLV+EG F SM + ITP
Sbjct: 328 LAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITP 387
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++EHYGCM+DLL + G L++A +IR+ PN VIWGA L CK+H N+E+ IA EL
Sbjct: 388 KIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEEL 447
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
L+P++ +L +MYA+ W + + R M + + K+ PG S IE++ +V++F A
Sbjct: 448 TRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQV-KKTPGCSSIELKGEVHEFVA 506
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLA 321
HP EI S L ++ Q +
Sbjct: 507 GGSQHPQYAEICSVLQDVEAQTNVG 531
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 117/269 (43%), Gaps = 55/269 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL--- 57
MP + ++ T M + + Q +A+ F +M G+ PD V +A L AC G+
Sbjct: 72 MPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTAR 131
Query: 58 -DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL------------------------ 92
+ G++IH ++ G + DV++ + L+ +Y +CG L
Sbjct: 132 RNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQ 191
Query: 93 -------DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN---VEPNG 142
D + +F + +++ WN+++ G V G EAL +F +M+ + V PN
Sbjct: 192 YARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNV 251
Query: 143 VTFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
T ++L AC AG +E G R R GY C++D+ K G +
Sbjct: 252 PTMSTILGACAGAGCLETGIWVHAYIERNRMNDD--GYLDR-------CLIDMYCKCGSI 302
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLH 223
++AL++ + + + W ++ G +H
Sbjct: 303 DNALQVFEKAPRKRDLFSWTTVICGLAMH 331
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 22/209 (10%)
Query: 52 AHLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
AHL A IH +++ G + ++ +AL+ YA GS D + +F ++ E+ L
Sbjct: 25 AHLSA----SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPR 80
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLS 167
++ G A +A+A+F M+ + V P+ V L AC AG R ++ +
Sbjct: 81 TAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHA 140
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ I P+V ++ + + G L + + + + + W A+L H ++
Sbjct: 141 LIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSR-STITWNAMLHQYARHGKVD 199
Query: 228 IAHIAVNELMILEPNN---------SGYC 247
A+ EL + P +GYC
Sbjct: 200 TAY----ELFLAMPRRDVVSWNTVMAGYC 224
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 211/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SWT+MI+CY N EAL F MK + + PD +T+ ++LSA A L AL+ G
Sbjct: 374 IKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKG 433
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++ + GF ++ ++LVDMYA CGSL+ + VF R K+L W ++I +H
Sbjct: 434 KEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMH 493
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +F M + + P+ +TF+++L AC+H+GL+ EG+R +M C Y + P EH
Sbjct: 494 GRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEH 553
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +A LE+A ++S + +P A +W A LG C++H N ++ IA +L+ L+
Sbjct: 554 YACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLD 613
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G L+ N++A RW +V ++R+ MK G++K PG SWIE+ KV+ F DKS
Sbjct: 614 PDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKN-PGCSWIEVGNKVHTFLVRDKS 672
Query: 301 HPASDEIYSSLSKLDEQL-KLASYVPELEAML 331
HP S +IY L+++ E+L K YVP+ + +L
Sbjct: 673 HPESYKIYQKLAQITEKLEKEGGYVPQTKLVL 704
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++SW ++I+ YS N Q EAL F EM+ +G+ + T+ L AC LG EIH
Sbjct: 76 DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIH 135
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ +DVY+ +ALV M+ + G + + +F +L EK+ WNS+I G +G +
Sbjct: 136 AAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYN 195
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL F + N++P+ V+ IS+L+A G + G+
Sbjct: 196 EALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGK 233
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 15/229 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ISWTT+I Y+QN EAL +++ G+ D + + + L AC+ L L
Sbjct: 274 MINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHA 333
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y ++ G D+ + + ++D+YA CG+++ + +F ++ K++ W S+I +
Sbjct: 334 KEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHN 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR------RFLSMTCGYSI 174
G A+EAL +F M +VEP+ +T +S+LSA + +G+ R M G ++
Sbjct: 393 GLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV 452
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V+ Y C G LE+A ++ ++ + V+W ++ +H
Sbjct: 453 NSLVDMYAC-------CGSLENAYKVFICTR-SKSLVLWTTMINAYGMH 493
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 125/240 (52%), Gaps = 10/240 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D I+W +MI ++QN + EAL F ++++ + PD+V++ ++L+A LG L G
Sbjct: 173 LDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG 232
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y M+ D ++ IG+ L+DMY+KC + + LVF K+ K+L W ++I A +
Sbjct: 233 KEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQN 292
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT---PE 177
EAL + ++ + ++ + + S L AC+ + + GY++ +
Sbjct: 293 NCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVH-----GYTLKRGLSD 347
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ ++D+ + G + A + S K + + V W +++ C +H L + V LM
Sbjct: 348 LMMQNMIIDVYADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLM 405
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M+ G+ D T VL AC + + G EIH +++ G+D V++ ++LV MYAKC
Sbjct: 1 MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60
Query: 92 LDRSLLVFFKLREKN-LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
+ + +F ++ E+N + WNSII +++G EAL +F M V N T ++ L
Sbjct: 61 ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120
Query: 151 ACTHAGLVEEG 161
AC + + G
Sbjct: 121 ACEDSSFKKLG 131
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 194/318 (61%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+ SW MIT Y+QN EAL ++M G+ PD T+ +VL+AC+ L +L G
Sbjct: 259 IPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG 318
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ H+ V++ G++ + I +AL+ MY KCGS+ S L F ++ ++ WN++I A H
Sbjct: 319 RKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARH 378
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ALA F M VEP+G+TF+S+LSAC HAG V E F SM Y I P EH
Sbjct: 379 GFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEH 438
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C+VD+LS+ G +E A ++I+ F+ + IWGALL C +H N+++ +A +++ LE
Sbjct: 439 FACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELE 498
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+YA W EVT++R M+E G++K+ P SW+E++ KV+ F D S
Sbjct: 499 PQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQ-PAYSWMEIDNKVHFFLGDDAS 557
Query: 301 HPASDEIYSSLSKLDEQL 318
HP I L + Q+
Sbjct: 558 HPEIHRIRLELKGMKLQM 575
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 142/316 (44%), Gaps = 50/316 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++IS+T M+ Y++ + +A FN M + V+ ++S G D
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNV----VSWTVMISGYVENGKFDEA 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + D ++ +A++ Y K G D++ ++F ++ ++L WN++I G A +
Sbjct: 222 ENLFEQMP----DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQN 277
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYS------ 173
G EAL + +M+ ++P+ T ISVL+AC+ ++EGR+ L + GY
Sbjct: 278 GSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISIC 337
Query: 174 ---IT--------------------PEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
IT P+V + M+ ++ G + AL +RS++ +
Sbjct: 338 NALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVE 397
Query: 208 PNAVIWGALLGGC----KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
P+ + + +LL C K+H +L + + I+ C + + +SR +V
Sbjct: 398 PDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDI-----LSRGGQV 452
Query: 264 TKIRVAMKELGIEKRC 279
K ++E+ E C
Sbjct: 453 EKAYKIIQEMPFEADC 468
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 33/188 (17%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R+ H +++ DVY + + A+ G++ + +F ++ ++ WNSII G
Sbjct: 30 FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYW 89
Query: 119 VHGFAHEALAMFDRMIYENV---------------------------EPNGVTFISVLSA 151
+G E+ +F M +NV + N ++ +++S
Sbjct: 90 KNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISG 149
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
VEE R F M I+ Y MVD +K G +E A L Q N V
Sbjct: 150 LVRYDRVEEASRLFEEMPRRNVIS-----YTAMVDGYAKIGEIEQARALFNCMP-QKNVV 203
Query: 212 IWGALLGG 219
W ++ G
Sbjct: 204 SWTVMISG 211
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 199/318 (62%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ SW +I SQ + +A++ FN M+ + PD TMA ++SACA LG+L +
Sbjct: 240 MPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIA 299
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + +++ ++ ++L+DMYAKCGS+ ++ L+F + R K+ +N +I LA H
Sbjct: 300 SQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALAQH 359
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD M E ++P+ VTF+ VLSAC HAGLV +G+ F SM Y+I +H
Sbjct: 360 GHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQSPDH 419
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL +AGL+E+A +L R+ +P+A +WGAL+ C+ H N+E+ +A EL+ +E
Sbjct: 420 YACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAARELIAIE 479
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N A +W V + +M+ GIEK G SW+E++R V++F + S
Sbjct: 480 PGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIEKTA-GCSWLEVDRVVHEFLMGESS 538
Query: 301 HPASDEIYSSLSKLDEQL 318
HP SDEIY L L QL
Sbjct: 539 HPNSDEIYCILEHLYLQL 556
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 18/234 (7%)
Query: 5 DIISWTTMITCYSQNKQ-----FREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALD 58
++ WT I Y+++ AL F M G+ P+ T ++V+ C+ L A+
Sbjct: 75 NVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVR 134
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G ++H ++ G ++G+ALVDMY G + + VF ++ N+ N+++
Sbjct: 135 EGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYV 194
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G +FDRM E + +++ +++ G R F M V
Sbjct: 195 RAGDVEAGRDVFDRM----AERDPISWNTLMMGYLRQGEAGVARDLFEEMP-----DRNV 245
Query: 179 EHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ ++ S+ GL DA+E+ +R ++FQP+ L+ C +L IA
Sbjct: 246 NSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIA 299
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 210/330 (63%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W+ + Y++N + R+A+ + M G++P+ T +VL ACA + AL GR I
Sbjct: 241 KNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRI 300
Query: 64 H--LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H ++V+ G + DVY+ +ALV+MY+KCG+L + +F K+ +L WNS+I A HG
Sbjct: 301 HERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHG 360
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F+RM E ++P +TF SVL AC+HAG++++GR+ F+S + I PE EH+
Sbjct: 361 QTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHF 420
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG + D+ +L+ F+P+ V W A LG C+ +RN++ A A L L+P
Sbjct: 421 GCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDP 480
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
LL NMYA+ RW++V ++R AM +L + + G SWIE++ +V++F + D H
Sbjct: 481 RKRAPYVLLSNMYAKAGRWSDVARMRQAM-QLFMTVKEAGRSWIEVKDRVHEFISGDLDH 539
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EI++ L +L + +K A YVP+ E +L
Sbjct: 540 PRIGEIHAELQRLTKLMKAAGYVPDTEMVL 569
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 3/241 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+ M+ Y++N REAL F +M G++P++VT+ + L ACA LG L G
Sbjct: 137 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSG 196
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V G V +G+ALV++Y KCG ++ + F ++ EKN+ W++I A +
Sbjct: 197 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARN 256
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
+A+ + RM E + PN TF+SVL AC +++GRR + G + +V
Sbjct: 257 DRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVY 316
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+V++ SK G L A + + V+W +L+ H E A + + E M L
Sbjct: 317 VLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTEKA-LELFERMRL 374
Query: 240 E 240
E
Sbjct: 375 E 375
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++++ SWT M+ +++N+ F F M GI+P +V ++ LSAC + +G
Sbjct: 36 IQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIG 95
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I L ++ G + + + +ALV +Y K G + VF ++ +++ W++++ A +
Sbjct: 96 RSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARN 155
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M + V PN VT +S L AC G + G + I V
Sbjct: 156 GHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVE-AQGIQSGVVV 214
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG-CKLHRNLEIAHIAVN-ELMI 238
+V+L K G +E A E + N V W A+ + RN + + +L
Sbjct: 215 GTALVNLYGKCGRIEAAAEAF-GQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEG 273
Query: 239 LEPNNSGYCTLL 250
L PN++ + ++L
Sbjct: 274 LAPNSTTFVSVL 285
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G+ + ++ + L+D+Y KC D +L VF ++ KN+F W ++ A +
Sbjct: 3 ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
F M+ + + P V LSACT A + GR L++ G I E +V L
Sbjct: 63 FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAIL-GTGIEEESIVQTALVSLY 121
Query: 189 SKAGLLEDALEL-IRSSKFQPNAVIWGALLG----------GCKLHRNLEIAHIAVNELM 237
K G DA + +R S + V W A++ L R +++ +A N++
Sbjct: 122 GKLGHCTDAASVFLRMS--HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT 179
Query: 238 IL 239
++
Sbjct: 180 LV 181
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 194/330 (58%), Gaps = 1/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + + SW MI+ Y+QN +A+ F EM+NS SP+ VT+ +LSACA LGAL LG+
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGK 440
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H V F+ +Y+ +AL+ MYAKCGS+ + +F + +KN WN++I G +HG
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHG 500
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M+ + P VTF+ VL AC+HAGLV+EG F SM Y P V+HY
Sbjct: 501 HGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
C+VD+L +AG L+ AL+ I + QP +W LLG C++H++ +A +L L+P
Sbjct: 561 ACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDP 620
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+N GY LL N+++ + + +R K+ + K PG + IE+ + F + D+SH
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK-APGYTLIEIGETPHVFTSGDQSH 679
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P I+ L KL+ +++ A Y PE E L
Sbjct: 680 PQVKAIHEKLEKLEGKMREAGYQPETELAL 709
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 32/298 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
MP +D I W TMI+ Y +N+ + E++ F ++ N + D T+ +L A A L L L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH + G Y+ + + +Y+KCG + + +F + R ++ +N++I G
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTS 299
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV-----EEGRRRFLS------- 167
+G +L++F ++ + T +S++ H L+ + FLS
Sbjct: 300 NGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTA 359
Query: 168 MTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALELIR---SSKFQPN 209
+T YS E+E + M+ ++ GL EDA+ L R +S+F PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPN 419
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLNMYAEVSRWAEVTKI 266
V +L C L + + + + +S Y T L+ MYA+ AE ++
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 18/257 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+++ MI Y+ N + +L F E+ SG T+ +++ HL L IH
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLM---LIYAIH 342
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y ++ F + +AL +Y+K ++ + +F + EK+L WN++I G +G
Sbjct: 343 GYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+++F M PN VT +LSAC G + G + + + +
Sbjct: 403 DAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTAL 461
Query: 185 VDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
+ + +K G + +A L F P N V W ++ G LH + + A +E++
Sbjct: 462 IGMYAKCGSIAEARRLF---DFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEML----- 513
Query: 243 NSGYC----TLLLNMYA 255
NSG T L +YA
Sbjct: 514 NSGIAPTPVTFLCVLYA 530
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ ++W TMI+ Y + +EAL F+EM NSGI+P VT VL AC+H G + G
Sbjct: 481 MPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEG 540
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI + + + GF+ V + +VD+ + G L R+L + + W +++
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACR 600
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG--------LVEEGRRRFLSMTC 170
+H + A + +++ ++P+ V + +LS A + + ++R L+
Sbjct: 601 IHKDTNLARTVSEKLF--ELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 171 GYSI-----TPEV 178
GY++ TP V
Sbjct: 659 GYTLIEIGETPHV 671
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 22/245 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+ + ++ +S N+ +L F + K++ + P+ T A +SA + G I
Sbjct: 82 DVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVI 141
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G D ++ +GS +V MY K ++ + VF ++ EK+ WN++I G +
Sbjct: 142 HGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E++ +F +I E+ + T + +L A A L E + G I G
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAV--AELQE--------LRLGMQIHSLATKTG 251
Query: 183 C---------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
C + L SK G ++ A L R + +P+ V + A++ G + E++
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMASTLFREFR-RPDIVAYNAMIHGYTSNGETELSLSLF 310
Query: 234 NELMI 238
ELM+
Sbjct: 311 KELML 315
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 196/325 (60%), Gaps = 5/325 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM---KNSGISPDQVTMATVLSACAHLGAL 57
MP RD++SW T++ Y + REAL F +M + + P+ TM+T+L ACA G L
Sbjct: 207 MPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 266
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEG 116
+ G +H Y+ + + D Y+ L+DMY KCGS+D +L VF K R+K+LF W ++I G
Sbjct: 267 ETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICG 326
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA+HG +AL MFD M + P+ VT + VL+AC H GLV+EG F SM + ITP
Sbjct: 327 LAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITP 386
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++EHYGCM+DLL + G L++A +IR+ PN VIWGA L CK+H N+E+ IA EL
Sbjct: 387 KIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEEL 446
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
L+P++ +L +MYA+ W + + R M + + K+ PG S IE++ +V++F A
Sbjct: 447 TRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQV-KKTPGCSSIELKGEVHEFVA 505
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLA 321
HP EI S L ++ Q +
Sbjct: 506 GGSQHPQYAEICSVLQDVEAQTNVG 530
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 55/269 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL--- 57
MP + ++ T M + + Q +A+ F +M G+ PD V +A L AC G+
Sbjct: 71 MPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTAR 130
Query: 58 -DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE- 115
+ G+ IH V+ G DV++ + L+ +Y + G L S VF + ++ WN+++
Sbjct: 131 RNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQ 190
Query: 116 ------------------------------GLAVHGFAHEALAMFDRMIYEN---VEPNG 142
G V G EAL +F +M+ + V PN
Sbjct: 191 YARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNV 250
Query: 143 VTFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
T ++L AC AG +E G R R GY C++D+ K G +
Sbjct: 251 PTMSTILGACAGAGCLETGIWVHAYIERNRMNDD--GYLDR-------CLIDMYCKCGSI 301
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLH 223
++AL++ + + + W ++ G +H
Sbjct: 302 DNALQVFEKAPRKKDLFSWTTVICGLAMH 330
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 52 AHLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
AHL A IH +++ G + ++ +AL+ YA GS D + +F ++ E+ L
Sbjct: 24 AHLSA----SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPR 79
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLS 167
++ G A +A+A+F M+ + V P+ V L AC AG R + +
Sbjct: 80 TAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHA 139
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ I P+V ++ + ++G L + + + + + W A+L H ++
Sbjct: 140 LVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSR-STITWNAMLHQYARHGKVD 198
Query: 228 IAH---IAVNELMILEPNN--SGYC 247
A+ +A+ ++ N +GYC
Sbjct: 199 TAYEMFLAMPRRDVVSWNTVLAGYC 223
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 200/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D+++W MI Y N QF +A+ F M G P T+ +VLSA + L L G
Sbjct: 266 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y+ + GF++D +G++L++MYAKCG ++ +L VF +++K + W +II GL +H
Sbjct: 326 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ ALA+F M ++PN + FI VL+AC HAGLV++GR+ F M Y I P +EH
Sbjct: 386 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+L +AG LE+A I + PN VIW +LLGG + H ++I A ++ +
Sbjct: 446 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G LL NMYA W +V+ +R M + G K PG S +E + +++F D S
Sbjct: 506 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKD-PGCSSVEHKGTLHEFIVGDIS 564
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + EIY+ +S++ E+LK +VP+ +L
Sbjct: 565 HPQTKEIYAKMSEMKEKLKCVGHVPDTTQVL 595
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 147/291 (50%), Gaps = 17/291 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R +I W T+I CY +N+ + + F+E+ + + PD T+ V+ CA LG + G++I
Sbjct: 76 RSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQI 134
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++IGF DV++ +LV+MY+KCG +D + VF + +K++ WNS+I+G A G
Sbjct: 135 HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEI 194
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL +F+ M E + ++ ++ + G VE R+ F M C ++ +
Sbjct: 195 DIALQLFEEM----PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVS-----WNA 245
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M++ K+G + ALEL + V W ++ G +L N + M+L+ +
Sbjct: 246 MINGYMKSGDFDSALELFYQMPIW-DLVTWNLMIAGYEL--NGQFMDAVKMFFMMLKLGS 302
Query: 244 SGYCTLLLNMYAEVSRWAEVTK---IRVAMKELGIE-KRCPGSSWIEMERK 290
L+++ + VS A + K I M++ G E G+S IEM K
Sbjct: 303 RPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAK 353
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
++H + ++ ++ S L+ +Y+ K L + +F +++ ++L WN+II+
Sbjct: 31 QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 90
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+ F+H+ + +F +++E + P+ T V+ C G+V+EG++ L++ G+ V
Sbjct: 91 NQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFV 149
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ G +V++ SK G + D + + V+W +L+ G
Sbjct: 150 Q--GSLVNMYSKCGEI-DCARKVFDGMIDKDVVLWNSLIDG 187
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 212/335 (63%), Gaps = 8/335 (2%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKN---SGISPDQVTMATVLSACAHLG 55
MP +RD++SW +++ ++QN +AL+ + M++ SG+ PD VT+ VLS+ AHLG
Sbjct: 219 MPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLG 278
Query: 56 ALDLGREIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
A +G ++ YV Q GF +V + +AL++ +A+CGSL R+ +F ++ K++ W ++
Sbjct: 279 ARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTAL 338
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G +HG A+++F+RM+ E + P+ V +++ SAC+HAGL +EGRR F +M Y
Sbjct: 339 ITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYK 398
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ P +EHY CMVDLL +AG LE+A ELI S + +WGALLG CK+H+N+++ A
Sbjct: 399 LRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDVGEEAF 458
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
++ LEP N GY L+ N+Y + + V ++R M+E G++K PG S++E + +V+
Sbjct: 459 TRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKE-PGCSYVEHKGRVHL 517
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLKLASYVPELE 328
F A D SHP + IY + +L+ +K S + E E
Sbjct: 518 FMADDHSHPQARRIYELVIRLELMVKEKSGMRESE 552
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 45/247 (18%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
F M+ + + D VT+ ++ A L + ++H ++G + + + L+ YA+
Sbjct: 148 FRRMRAAAVGFDAVTLLALVPATP----LSVVPQVHALAARVGLATETSVANCLMSTYAR 203
Query: 89 CG----SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY---ENVEPN 141
G +L R + L ++L WN+++ A +G A +AL ++ RM VEP+
Sbjct: 204 GGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPD 263
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY---------------GCMVD 186
VT + VLS+ H G + G+ +VEHY +++
Sbjct: 264 AVTIVGVLSSAAHLG----------ARGVGF----DVEHYVRQRIPGFHTNVQLCNALIN 309
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNN 243
++ G L A +L + + V W AL+ G +H N ++A +++ E M+ E P+N
Sbjct: 310 FHARCGSLPRAQQLFDEMP-RKSIVSWTALITGHGMHGNGDVA-VSLFERMVSEGIRPDN 367
Query: 244 SGYCTLL 250
L
Sbjct: 368 VAMVALF 374
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 204/330 (61%), Gaps = 3/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE-ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+ A D++ W TMI+ +S + E L F EM+ +G PD + V SAC++L + L
Sbjct: 305 ITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSL 364
Query: 60 GREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+++H ++ + V + +ALV MY+KCG++ + VF + E N NS+I G A
Sbjct: 365 GKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYA 424
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG E+L +F+ M+ +++ PN +TFI+VLSAC H G VEEG++ F M + I PE
Sbjct: 425 QHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEA 484
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CM+DLL +AG L++A +I + F P ++ W LLG C+ H N+E+A A NE +
Sbjct: 485 EHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLR 544
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+ +L NMYA +RW E ++ M+E G++K+ PG SWIE+++KV+ F A D
Sbjct: 545 LEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKK-PGCSWIEIDKKVHVFVAED 603
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELE 328
SHP EI+ + K+ +++K A YVP++
Sbjct: 604 TSHPMIKEIHVYMGKMLKKMKQAGYVPDIR 633
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 7/253 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD +SW MI Q+++ EA+ F EM G+ D TMA+VL+A + L GR+
Sbjct: 205 GRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQ 264
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVH- 120
H +++ GF + ++GS L+D+Y+KC GS+ VF ++ +L WN++I G +++
Sbjct: 265 FHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYE 324
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ + L F M P+ +F+ V SAC++ G++ V
Sbjct: 325 DLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSV 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
+V + SK G + DA + + + N V +++ G H +E+ + + ELM+
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMP-EHNTVSLNSMIAGYAQH-GVEVESLRLFELMLEK 442
Query: 239 -LEPNNSGYCTLL 250
+ PN+ + +L
Sbjct: 443 DIAPNSITFIAVL 455
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P DI+S+ T+I Y+ + L F E++ + D T++ V++AC + L
Sbjct: 101 IPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACG--DDVGLV 158
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGL 117
R++H +V+ G D + +A++ Y++ G L + VF ++ E ++ WN++I
Sbjct: 159 RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVAC 218
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE--GRRRFLSMTCGYSIT 175
H EA+ +F M+ ++ + T SVL+A T V++ G R+F M
Sbjct: 219 GQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFT---CVKDLVGGRQFHGMMIKSGFH 275
Query: 176 PEVEHYGCMVDLLSK-AGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
++DL SK AG + + ++ P+ V+W ++ G L+ +L
Sbjct: 276 GNSHVGSGLIDLYSKCAGSMVECRKVFEEIT-APDLVLWNTMISGFSLYEDL 326
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 38/216 (17%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T +L AC L G+ +H + Y+ + +Y+KCGSL + F
Sbjct: 11 TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRM--------------------------IYE 136
+ N+F +N++I A H H A +FD + ++E
Sbjct: 71 QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130
Query: 137 NVEP-----NGVTFISVLSAC-THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK 190
V +G T V++AC GLV + + CG+ V + ++ S+
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDDVGLVRQ--LHCFVVVCGHDCYASVNN--AVLACYSR 186
Query: 191 AGLLEDALELIR--SSKFQPNAVIWGALLGGCKLHR 224
G L +A + R + V W A++ C HR
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHR 222
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 191/288 (66%), Gaps = 3/288 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWT MI+ +Q Q +AL F EM ++ + PD++T+++VLSAC+HLG LD G
Sbjct: 350 MPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTG 409
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + DVY+G+AL+DMY KCG +D++L VF +++K+ W S+I GLAV+
Sbjct: 410 QTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVN 469
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF +F +M+ + ++P +FI +L ACTHAGLV++G F SM Y + PE++H
Sbjct: 470 GFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKH 529
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLLS++G L+ A E I+ P+ V+W LL CKLHRNL +A IA ++L+ L+
Sbjct: 530 YGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELD 589
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
P+NSG LL N YA RW + +++R M ++K SSW +E
Sbjct: 590 PSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQK---PSSWSSIE 634
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 150/284 (52%), Gaps = 35/284 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SW ++I YSQ +F+E LD FN M+ + ++ D VTM V+ AC++L +
Sbjct: 218 MDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVV 277
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ Y+ DIDVY+G++L+DMY + G +D + VF +++EKN+ WN+++ G A
Sbjct: 278 DSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATA 337
Query: 121 G-------------------------------FAHEALAMFDRMIYENVEPNGVTFISVL 149
G +AL +F M+ NV+P+ +T SVL
Sbjct: 338 GDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVL 397
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC+H GL++ G+ M C + I +V ++D+ K G+++ ALE+ K + +
Sbjct: 398 SACSHLGLLDTGQTVHEYM-CRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMK-KKD 455
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLL 251
+V W +++ G ++ ++ ++++ L+P + + +LL
Sbjct: 456 SVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILL 499
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 5/235 (2%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + +I SQ++ EA+ +++ M N GI D +T + AC+ + + G+ H
Sbjct: 121 LLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFH 180
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ V+++GF ++I ++L+ MY G L + VF K+ +++L WNS+I G +
Sbjct: 181 VQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFK 240
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGC 183
E L +F+ M NV + VT + V+ AC++ L E+G + + +V
Sbjct: 241 EVLDLFNLMREANVTADSVTMVKVILACSY--LCEDGVVDSMVKYIEDKHVDIDVYLGNS 298
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
++D+ + GL++ A + + + N V W A+L G +L A NE+ I
Sbjct: 299 LIDMYGRRGLVDLARRVFDRMQ-EKNIVSWNAMLTGYATAGDLVAAKKLFNEMPI 352
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/284 (45%), Positives = 192/284 (67%), Gaps = 2/284 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SW T+I+C +QN++ EAL+ F +M+ G PD+VT+ T+L C+ LGAL++G
Sbjct: 199 MSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVG 258
Query: 61 REIHLYVMQIGFDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ IH Y G + + +G++L+D Y KCG+++++ +F K+ K++ WN+II G A+
Sbjct: 259 QRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFAL 318
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G A+ +F M E ++PN TF++VL+AC H+GL+E+GR F SM Y I P++E
Sbjct: 319 NGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLE 378
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL + G +E+A +LI+S QPNA +WGA+LG C+ H NL++A +AV EL+ L
Sbjct: 379 HFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELISL 438
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS 283
EP NSG LL NM AE RW EV +R M+E + K+ PG S
Sbjct: 439 EPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSV-KKAPGQS 481
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 34/279 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + ++I +S + F ++L F+ MKN I PDQ T A +L +CA+L LG+ +
Sbjct: 71 NIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVI 130
Query: 65 LYVMQIGF-------------------------------DIDVYIGSALVDMYAKCGSLD 93
V + GF DV + + ++ + K G++D
Sbjct: 131 SEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVD 190
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
L +F ++ E++L WN+II LA + EAL +F +M +P+ VT +++L C+
Sbjct: 191 FGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCS 250
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G +E G+R + ++ ++D K G +E A + + + + V W
Sbjct: 251 RLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCK-SVVSW 309
Query: 214 GALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLL 250
++ G L+ E A E+ L+PN++ + +L
Sbjct: 310 NTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVL 348
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 208/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W +MI Y +N + + L F M S + P+ +++++VL C++L AL LG
Sbjct: 255 MAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG 314
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H V + D ++L+ MY KCG LD + +F ++ K++ WN++I G A H
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQH 374
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD+M ++P+ +TF++V+ AC HAG V+ G + F SM + I + H
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL +AG L++A+ LI+ F+P+A I+G LLG C++H+NL++A A L+ L+
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLD 494
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++ L N+YA ++W +V K+R MKE + K PG SWIE++ ++F +SD+
Sbjct: 495 PTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVK-IPGYSWIEIKSVTHEFRSSDRL 553
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L++LD ++KLA YVP+LE L
Sbjct: 554 HPELTSIHKKLNELDGKMKLAGYVPDLEFAL 584
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI SW T+I+ ++QN Q ++A D F+ M + V+ + ++S G L+
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDLEAA 217
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E++ +G V + +A++ Y K G ++ + +F ++ KNL WNS+I G +
Sbjct: 218 EELY---KNVGMK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVEN 273
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A + L +F MI V PN ++ SVL C++ + G R+ + ++ +
Sbjct: 274 CRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG-RQMHQLVSKSPLSKDTTA 332
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G L+ A +L + + + W A++ G H
Sbjct: 333 CTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNAMISGYAQH 374
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 204/320 (63%), Gaps = 1/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +MI +++ Q++EAL F+EM+ SG+SP+ +T+ + LSACA GALD G
Sbjct: 284 MPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH YV + + D + S+L+DMY+KCG +D+++ +F + ++LF W SI+ GLA+H
Sbjct: 344 AWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMH 403
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL F +M V+P+ VT + VLSAC HAGL+++G F SM + + P+VEH
Sbjct: 404 GRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEH 463
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL + G L++A +LI + N +IWGA L C++H N+E+ +A L+ L+
Sbjct: 464 YGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLD 523
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + +L NMYAE ++W +R +K+ K+ PG S IE+ V+ F D S
Sbjct: 524 PRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKK-GLKKSPGCSSIEVNGSVHGFLVGDNS 582
Query: 301 HPASDEIYSSLSKLDEQLKL 320
HP EI S + K+++ ++L
Sbjct: 583 HPCYTEINSMVEKIEKLMRL 602
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 41/259 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++ WT +I Y +AL+ F M+ G++PD V ++TV+SAC LG L + + +H
Sbjct: 157 LVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHC 216
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLD-----------RSLLV---------------- 98
++ + G ++D ++ S L+ Y +CGSLD ++++V
Sbjct: 217 FIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLEL 276
Query: 99 ----FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
F + ++++ WNS+I G A G EAL F M + V PN +T +S LSAC
Sbjct: 277 GKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACAS 336
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYG----CMVDLLSKAGLLEDALELIRSSKFQPNA 210
G ++ G + Y ++ G ++D+ SK G ++ A+++ S + +
Sbjct: 337 HGALDTG-----AWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEEST-RRDL 390
Query: 211 VIWGALLGGCKLHRNLEIA 229
W +++ G +H E A
Sbjct: 391 FTWTSIVCGLAMHGRGEKA 409
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 10/230 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKN--SGISPDQVTMATVLSACAHLGALDLGRE 62
++ W TMI +N M+ +G+ P+ T +L A + G E
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H V++ GF ++ AL+ Y CG + + VF ++R+ L W II F
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHY 181
+AL +F M + P+ V +V+SAC G + + +M C + EV+ +
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAK----AMHCFIEKSGIEVDAF 228
Query: 182 --GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++ + G L+ A + + + N V+W ++ H NLE+
Sbjct: 229 VSSTLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELG 277
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 199/325 (61%), Gaps = 4/325 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ARD+++W TMI Y + +F EAL F M S + PD+ T A+V++ CA LGAL
Sbjct: 102 MRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAKLGALKHA 161
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +++ +++ + SAL+DMY+KCG + + +F ++ N+ WN++I GLAVH
Sbjct: 162 QWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVH 221
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +F +M ENV P+ +TF+ +L+AC+H GLV+EGR+ F M YS+ P +EH
Sbjct: 222 GLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEH 281
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AGLLE+A +I+S +P+ VIW ALLG C+ ++ E+ A+ + L
Sbjct: 282 YGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAAMANISRLR 341
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
SG LL N+Y RW + MK+ G+ K G S E ++ F A D+S
Sbjct: 342 ---SGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHK-VRGKSCFEWAGFLHPFKAGDRS 397
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP ++ IY L L ++ KLA YVP
Sbjct: 398 HPETEAIYKMLEGLIQRTKLAGYVP 422
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
+ ID+ + ++D + + + +VF K+R +++ WN++I G EAL +F
Sbjct: 72 WSIDLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFR 131
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
M NVEP+ TF SV++ C G ++ + + I ++D+ SK
Sbjct: 132 FMNKSNVEPDKYTFASVINGCAKLGALKHA-QWVHELLIEKRIELNFILSSALIDMYSKC 190
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G ++ A E+ + + N IW A++ G +H
Sbjct: 191 GKIQTAKEIFDGVQ-RNNVCIWNAMISGLAVH 221
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 199/328 (60%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SWT MI Y + + E F+++ SGI P++ T + VL+ACA A +LG+++
Sbjct: 286 RDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQV 345
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ +IGFD + S LV MY KCG++ + VF + +L W S+I G A +G
Sbjct: 346 HGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQP 405
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL F+ ++ +P+ +TF+ VLSACTHAGLV++G F S+ + +T +HY C
Sbjct: 406 DEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYAC 465
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
++DLLS++G L++A ++I +P+ +W +LLGGC++H NL++A A L +EP N
Sbjct: 466 LIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPEN 525
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
T L N+YA W V ++R M G+ K+ PG SWIE++R+V+ F D SH
Sbjct: 526 PATYTTLANIYATAGLWGGVAEVRKVMDARGVVKK-PGLSWIEIKREVHVFLVGDTSHAK 584
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S EI+ L KL +++K YVP+ +L
Sbjct: 585 SKEIHEFLGKLSKRMKEEGYVPDTNFVL 612
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 3/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M RD SWT M + Y ++ Q EAL+ F M ++ ++ TM++ L+A A + +L L
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHL 240
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+EIH ++++IG D+D + SAL DMY KCGS+ + +F K ++++ W ++I+
Sbjct: 241 GKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFK 300
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G E A+F ++ + PN TF VL+AC E G++ MT P
Sbjct: 301 EGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMT-RIGFDPSSF 359
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + +K G +++A + +P+ V W +L+ G
Sbjct: 360 AASTLVHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLISG 398
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D++SWT++I+ Y+QN Q EAL F + SG PD +T VLSAC H G +D G
Sbjct: 384 MPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKG 443
Query: 61 REIHLYVMQ---IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
E + + + D Y + L+D+ ++ G L + + K+ E + F W S++ G
Sbjct: 444 LEYFDSIKEKHGLTHTADHY--ACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGG 501
Query: 117 LAVHG----FAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGL 157
+HG A A+F+ +EP N T+ ++ + AGL
Sbjct: 502 CRIHGNLKLAKRAAEALFE------IEPENPATYTTLANIYATAGL 541
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 8/151 (5%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY 77
+ K+ REA+ + + P T +T+L C L ALD G ++H + GF V
Sbjct: 70 EQKRLREAIQILDHVDR----PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVV 125
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
I + ++DMY KC SL + +F ++ E++L WN +I G A G EA +FD+M
Sbjct: 126 ISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQM---- 181
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
E + ++ ++ S EE F +M
Sbjct: 182 TERDNFSWTAMTSGYVRHDQHEEALELFRAM 212
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 203/321 (63%), Gaps = 1/321 (0%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I+S+ +IT Y+++ Q EAL F E++ S I P VTM +V+ +CA LGALDLG+ IH
Sbjct: 196 IVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHE 255
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
YV + GFD V + +AL+DM+AKCGSL ++ +F +R ++ W+++I A HG +
Sbjct: 256 YVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLK 315
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
A++MF+ M E V P+ +TF+ +L AC+HAGLVE+GR F SM+ Y ITP ++HYGCMV
Sbjct: 316 AISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMV 375
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245
DLL +AG L++A + + + ++W LL C H N+E+A + + L+ + G
Sbjct: 376 DLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGG 435
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
+L N+YA V RW +V +R MK+ G+ K PG S +E+ V++F + D H S
Sbjct: 436 DYVILSNLYARVGRWEDVNHLRKLMKDRGVVK-VPGCSSVEVNNVVHEFFSGDGVHCVSV 494
Query: 306 EIYSSLSKLDEQLKLASYVPE 326
E+ +L +L +++KL YVP+
Sbjct: 495 ELRRALDELMKEIKLVGYVPD 515
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 115/216 (53%), Gaps = 6/216 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DII + M Y+++ A F E+ SG+ PD T +++L ACA AL G +
Sbjct: 93 KDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGL 152
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + +++G + ++YI L++MYA+C ++ + VF ++ + + +N+II G A
Sbjct: 153 HCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQP 212
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHY 181
+EAL++F + N+EP VT +SV+ +C G ++ G+ ++ G+ +V
Sbjct: 213 NEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK-GFDKYVKVN-- 269
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
++D+ +K G L DA+ + + + W A++
Sbjct: 270 TALIDMFAKCGSLTDAISIFEGMRVRDTQA-WSAMI 304
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W+ MI ++ + +A+ F EMK G+ PD++T +L AC+H G ++ G
Sbjct: 292 MRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQG 351
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGL 117
R + Y M + I I +VD+ + G LD + KL K W +++
Sbjct: 352 RG-YFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSAC 410
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+ HG A + +R I+E + +G ++
Sbjct: 411 STHGNVEMAKRVIER-IFELDDAHGGDYV 438
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD---MYAKCGSLDRSL 96
+Q+ ++LS C L L ++I Y ++ D+ + + L++ + +D +
Sbjct: 28 NQLHPLSLLSKCTSLNEL---KQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAH 84
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
+F ++ +K++ +N + G A + A ++F ++ + P+ TF S+L AC +
Sbjct: 85 HLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSK 144
Query: 157 LVEEG 161
+ EG
Sbjct: 145 ALREG 149
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 204/334 (61%), Gaps = 4/334 (1%)
Query: 1 MPAR-DIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALD 58
MP + + +SW MI C+ + +FREA F M+ + D+ AT+LSAC +GAL+
Sbjct: 192 MPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALE 251
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G IH YV + G +D + + ++DMY KCG LD++ VF L+ K + WN +I G A
Sbjct: 252 QGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFA 311
Query: 119 VHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+HG +A+ +F M E V P+ +TF++VL+AC H+GLVEEG F M + I P
Sbjct: 312 MHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPT 371
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
EHYGCMVDLL++AG LE+A ++I P+A + GALLG C++H NLE+ N ++
Sbjct: 372 KEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVI 431
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+P NSG +L NMYA +W +V +R M + G++K PG S IEME V +F A
Sbjct: 432 ELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKE-PGFSMIEMEGVVNEFVAG 490
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ HP ++ IY+ + ++ E +++ +VP+ + +L
Sbjct: 491 GRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVL 524
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 43/265 (16%)
Query: 1 MPARDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
+P D + T+ + S ++ +L ++ M ++P+ T +++ AC +
Sbjct: 62 LPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK---LEEE 118
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H +V++ GF D Y + L+ +Y GSLD + VF + + N+ W S++ G +
Sbjct: 119 AKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQ 178
Query: 120 HGFA--------------------------------HEALAMFDRM-IYENVEPNGVTFI 146
G EA A+F RM + + +E +
Sbjct: 179 WGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAA 238
Query: 147 SVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204
++LSACT G +E+G +++ T I + + ++D+ K G L+ A +
Sbjct: 239 TMLSACTGVGALEQGMWIHKYVEKT---GIVLDSKLATTIIDMYCKCGCLDKAFHVFCGL 295
Query: 205 KFQPNAVIWGALLGGCKLHRNLEIA 229
K + W ++GG +H E A
Sbjct: 296 KVK-RVSSWNCMIGGFAMHGKGEDA 319
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 197/315 (62%), Gaps = 2/315 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++SW MI+ Y + + EAL F +M+ +G+ PD +T +VL AC+ L L+ G
Sbjct: 369 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 428
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ +I+ + AL+DMYAKCG++D +L +F +L E++ W S+I H
Sbjct: 429 KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSH 488
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F++M + +P+ VTF+++LSAC+HAGLV+EG F M Y P VEH
Sbjct: 489 GQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH 548
Query: 181 YGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
Y C++DLL + G L +A E++ R+ + + + L C LH+ L++ L+
Sbjct: 549 YSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEK 608
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P++ +L NMYA V +W EV K+R+ +KELG++K PG SWIE+ ++++ F DK
Sbjct: 609 DPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN-PGCSWIEVGKRIHPFVVEDK 667
Query: 300 SHPASDEIYSSLSKL 314
SHP +D IY +S L
Sbjct: 668 SHPQADMIYECMSIL 682
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW +I+CY Q+ Q +AL+ F EMK SG PD VT+ TV+S+CA L L+ G
Sbjct: 167 MPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERG 226
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH+ +++ GF +D ++ SALVDMY KCG L+ + VF +++ KN+ WNS+I G ++
Sbjct: 227 KEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLK 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + + +F RM E + P T S+L AC+ + ++ G+ GY I VE
Sbjct: 287 GDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGK-----FIHGYIIRNRVEA 341
Query: 181 ----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL K G + A E + + + N V W ++ G
Sbjct: 342 DIFVNSSLIDLYFKCGNIGSA-ENVFQNMPKTNVVSWNVMISG 383
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 120/224 (53%), Gaps = 10/224 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++SW +MI YS + ++ F M GI P T++++L AC+ L LG+ I
Sbjct: 271 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 330
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ + D+++ S+L+D+Y KCG++ + VF + + N+ WN +I G G
Sbjct: 331 HGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSY 390
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE---- 179
EAL +F M V+P+ +TF SVL AC+ ++E+G+ + I ++E
Sbjct: 391 LEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE-----IHNFIIESKLEINEV 445
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G ++D+ +K G +++AL + + + V W +++ H
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSH 488
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 5/220 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDLGREI 63
DI W ++ ++N F E L+ F+ + + + PD T +VL AC+ LG + G+ +
Sbjct: 69 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +V++ GF +DV + S+ V MYAKC + ++ +F ++ E+++ WN++I G
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQP 188
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYG 182
+AL +F+ M +P+ VT +V+S+C +E G+ + + G+++ V
Sbjct: 189 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS--S 246
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
+VD+ K G LE A E+ + + N V W +++ G L
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQ-RKNVVSWNSMIAGYSL 285
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 200/328 (60%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ +ISW MI Y N EA+D + +M+ G+ PD V++++VL AC L A LGR I
Sbjct: 269 KSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRI 328
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV + ++ + +AL+DMYAKCG L + VF ++ +++ W S+I + G
Sbjct: 329 HEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQG 388
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+A+F +M P+ + F+SVL+AC+HAGLV+EGR F ++ Y ITP +EHY C
Sbjct: 389 KDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCF-NLMAEYGITPGIEHYNC 447
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG +++A L R +PN +WG+LL C+++ ++ IA +A + L L P
Sbjct: 448 MVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQ 507
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SGY LL N+YA+ RW +V +R M GI K+ PG+S +E+ VY F A D+SH
Sbjct: 508 SGYYVLLSNIYAKAGRWQDVETVRSIMNSKGI-KKIPGNSNVEINDHVYTFLAGDQSHTQ 566
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S EIY +L L ++K Y+PE ++ L
Sbjct: 567 SKEIYKALGVLVGRMKELGYMPETDSAL 594
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++ + MI Y N +++AL F M N G PD T VL AC+ G L +G +I
Sbjct: 100 KNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQI 159
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++G D+++YIG+ LV MY KC LD + V ++ +++ WNS++ G A +G
Sbjct: 160 HGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRF 219
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHA 155
++AL + M ++P+ T S+L A T+
Sbjct: 220 NDALKLCREMEDLKLKPDAGTMGSLLPAVTNT 251
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 41/177 (23%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+G L+ YA CG + +F ++ +KN+ +N +I +G +AL +F M +
Sbjct: 73 LGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQG 132
Query: 138 VEPNGVTFISVLSACT-----------HAGLVEEG-----------------------RR 163
P+ T+ VL AC+ H +V+ G R
Sbjct: 133 FYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAAR 192
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS---KFQPNAVIWGALL 217
R L G + + MV ++ G DAL+L R K +P+A G+LL
Sbjct: 193 RVLDEMPGRDMVS----WNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLL 245
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 204/314 (64%), Gaps = 1/314 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW +MI+ Y +N + REALD F +M+ I P + TM ++L+A A LGAL G
Sbjct: 217 MPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQG 276
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + F+++V + ++++DMY KCGS+ + VF K L WN++I GLA++
Sbjct: 277 EWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMN 336
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EA+ +F R+ N+ P+ VTF+ VL+AC ++GLV++ + F M+ Y I P ++H
Sbjct: 337 GCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKH 396
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD L +AGLLE+A ELIR+ P+A+IW +LL C+ H N+E+A A ++ L+
Sbjct: 397 YSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLD 456
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N+S LL N+YA ++ E + R++MKE IEK PG S IE+ ++++F A +
Sbjct: 457 GNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKE-PGCSLIEVNGEIHEFVAGGRL 515
Query: 301 HPASDEIYSSLSKL 314
HP + E+YS L++L
Sbjct: 516 HPQAQEVYSLLNEL 529
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 9/217 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGREI 63
++ SW T+I +SQ+ A+ F +M S + P ++T +V A A LG G ++
Sbjct: 88 NLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQL 147
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+++G D +I + ++ MYA CG L F++ + ++ WNS+I GLA G
Sbjct: 148 HGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEV 207
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
E+ +FD M N V++ S++S G + E F M I P
Sbjct: 208 DESRKLFDEMPLRNT----VSWNSMISGYVRNGRLREALDLFGQMQ-EERIKPSEFTMVS 262
Query: 184 MVDLLSKAGLLEDA---LELIRSSKFQPNAVIWGALL 217
+++ ++ G L+ + IR + F+ N ++ +++
Sbjct: 263 LLNASARLGALKQGEWIHDYIRKNNFELNVIVTASII 299
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
++IH ++++ G S ++ A G ++ + LVF ++ NLF WN+II G +
Sbjct: 41 QKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFS 100
Query: 119 VHGFAHEALAMF-DRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
H A+++F D +I +V+P+ +T+ SV A GL G
Sbjct: 101 QSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYG 144
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 205/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +DI++WT+M+ C+++N EA+ F +M N+GI PD V + +L A A L +L G
Sbjct: 526 LDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKG 585
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++++ F ++ + S+LVDMY+ CGS++ +L VF + + K++ W ++I +H
Sbjct: 586 KEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMH 645
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F RM+ V P+ V+F+++L AC+H+ LV+EG+ M Y + P EH
Sbjct: 646 GHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEH 705
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL ++G E+A + I+S +P +V+W ALLG C++H+N E+A IA ++L+ LE
Sbjct: 706 YACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELE 765
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N G L+ N++AE+ +W V +IR M E G+ K P SWIE+ V+ F A D S
Sbjct: 766 PDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKD-PACSWIEIGNTVHTFTARDHS 824
Query: 301 HPASDEIYSSLSKLDEQLK 319
H S I+ L+++ E+L+
Sbjct: 825 HRDSQAIHLKLAEITEKLR 843
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 124/223 (55%), Gaps = 3/223 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D +SWTT+I CY+Q+ ++ EA+ F + GI D + M ++L AC+ L ++ L
Sbjct: 426 MRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLL 485
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y ++ G +D+ + + ++D+Y +CG + +L +F L +K++ W S++ A +
Sbjct: 486 KQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAEN 544
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G HEA+A+F +M+ ++P+ V + +L A + +G+ + G E
Sbjct: 545 GLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRG-KFPVEGAV 603
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ S G + AL++ +K + + V+W A++ +H
Sbjct: 604 VSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMH 645
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 142/288 (49%), Gaps = 39/288 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D ISW +M++CY QN+ + EA+D F EM +G +PD + ++LSA HLG L GRE+
Sbjct: 328 KDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREV 387
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y ++ D D+ I + L+DMY KC S++ S VF ++R K+ W +II A
Sbjct: 388 HAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRY 447
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEG------RRRFL 166
EA+ F E ++ + + S+L AC+ H+ + G + R +
Sbjct: 448 SEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRII 507
Query: 167 SM--TCG---YSIT-------PEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAV 211
+ CG Y++ ++ + MV+ ++ GLL +A+ L + ++ QP++V
Sbjct: 508 DIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSV 567
Query: 212 ----IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255
I GA+ G L + EI + P + L++MY+
Sbjct: 568 ALVGILGAIAGLSSLTKGKEIHGFLIRGKF---PVEGAVVSSLVDMYS 612
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+ SW + I+ QN F EALD F M++ G S + T VL CA L L+ GRE
Sbjct: 227 GRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRE 286
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H +++ G + ++ + LV MYA+CG +D +L VF ++ +K+ WNS++ +
Sbjct: 287 LHAALLKCGTEFNIQCNALLV-MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRL 345
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EA+ F M+ P+ +S+LSA H G + GR
Sbjct: 346 YAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGR 385
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS----GISPDQVTMATVLSACAHLGA 56
MPAR + SW +I + EA+ + M+ S G +PD T+A+VL AC G
Sbjct: 119 MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGD 178
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNLFCWNSIIE 115
G E+H ++ G D + +ALV MYAKCG LD +L VF +R+ +++ WNS I
Sbjct: 179 GRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAIS 238
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSI 174
G +G EAL +F RM + N T + VL C + GR + + CG
Sbjct: 239 GCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEF 298
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ ++ + ++ G ++ AL + R + + W ++L
Sbjct: 299 NIQCN---ALLVMYARCGWVDSALRVFREIG-DKDYISWNSML 337
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Query: 18 QNKQFREALDAFNEMKNSGISPDQVT-MATVLSACAHLGALDLGREIHLYVMQ---IGFD 73
++ REAL G +P VL A A+ GR++H + + +G D
Sbjct: 31 KDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDD 90
Query: 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
++ + L+ MY KCG L + +F + + +F WN++I G A EA+ ++ M
Sbjct: 91 DAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAM 150
Query: 134 ----IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----GCMV 185
P+G T SVL AC EG R S G ++ ++ +V
Sbjct: 151 RASEPVAGAAPDGCTLASVLKACG-----AEGDGRCGSEVHGLAVKSGLDRSTLVANALV 205
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ +K GLL+ AL + + + W + + GC
Sbjct: 206 GMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 197/326 (60%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDI+SW+T+I YSQ EA + + M+ G P + +A+VLSAC ++ L+ G
Sbjct: 379 MTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHG 438
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H YV+ IG + + SAL++MY KCGS++ + +F ++ W ++I G A H
Sbjct: 439 KQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEH 498
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ E + +F+++ + P+ VTFI VLSAC+HAGLV+ G R F +M+ Y I+P EH
Sbjct: 499 GYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEH 558
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL +AG L DA +I + F + V+W LL C++H ++E ++ LE
Sbjct: 559 YGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLE 618
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN +G L N+YA +W E IR MK G+ K PG SWI+++ V+ F A D+S
Sbjct: 619 PNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKE-PGWSWIKVKDLVFAFVAGDRS 677
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP ++IY+ L L + +LA V E
Sbjct: 678 HPQGEDIYNMLDLLASRTELADCVQE 703
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWTT+IT Q Q A+ AF M+ S +SP++ T A V+S CA+L ++ G
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWG 337
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H ++ +G + + ++++ MYAKCG L S ++F ++ +++ W++II G +
Sbjct: 338 EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQG 397
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA + M E +P SVLSAC + ++E G++ Y ++ +EH
Sbjct: 398 GHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEH 452
Query: 181 YG----CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++++ K G +E+A + +++ + V W A++ G H
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTAMINGYAEH 498
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 4/220 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT +IT + +EAL F+EM S + D T A L ACA GAL+ G
Sbjct: 177 MPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH M+ GFD+ ++ + L MY KCG L+ L +F K+ +++ W +II L
Sbjct: 237 REIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQM 296
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
G A+ F RM +V PN TF +V+S C + +E G + L + G + + VE
Sbjct: 297 GQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVE 356
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ ++ + +K G L + +I + + V W ++ G
Sbjct: 357 N--SIMTMYAKCGQLTSS-SVIFHEMTRRDIVSWSTIIAG 393
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 5/219 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
M +D ISWTT+I+ Y EAL F M+ SG+ D ++ AC ++
Sbjct: 75 MSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNY 134
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H Y ++ G V++GSAL+DMY K G + VF ++ +N+ W +II GL
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
G+ EAL F M VE + TF L AC +G + GR +M G+ ++ V
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ + + +K G LE L L + + V W ++
Sbjct: 255 AN--TLATMYNKCGKLEYGLTLFEKMSMR-DVVSWTTII 290
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 207/327 (63%), Gaps = 5/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
R++++WT MI Y+Q +AL F+EM K ++P+ T++ +L ACAHL AL +G+
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGK 532
Query: 62 EIHLYVMQIG-FDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH YV + ++ VY + + L+DMY+KCG +D + VF + ++N W S++ G +
Sbjct: 533 QIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGM 592
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +FD+M P+ ++F+ +L AC+H+G+V++G F M Y + E
Sbjct: 593 HGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAE 652
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C++DLL++ G L+ A + I+ +P+AVIW ALL C++H N+E+A A+N+L+ +
Sbjct: 653 HYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNM 712
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N G TL+ N+YA RW +V +IR MK+ GI+KR PG SW++ ++ F D+
Sbjct: 713 KAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKR-PGCSWVQGKKGTASFFVGDR 771
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP S EIYS L +L ++K+ YVPE
Sbjct: 772 SHPLSPEIYSLLERLIGRIKVMGYVPE 798
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 18/236 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+I+W+ +I Y+Q +EALDAF +M G P+ VT+ ++LSACA LGAL G EIH
Sbjct: 359 DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIH 418
Query: 65 LYVMQ------------IGFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCW 110
Y ++ G D+ + +AL+DMY+KC S RS+ RE+N+ W
Sbjct: 419 AYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTW 478
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+I G A +G +++AL +F MI + V PN T +L AC H + G++ +
Sbjct: 479 TVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYV 538
Query: 169 TCGYSITPEVEHYG-CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
T + P V C++D+ SK G ++ A + S + N V W +++ G +H
Sbjct: 539 TRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 129/268 (48%), Gaps = 53/268 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHLGALD 58
D+ISW +++ + + R AL+ F+EM K + D +++ +L ACA L AL
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF----FK------------- 101
+EIH Y ++ G D ++ +AL+D YAKCGS++ ++ VF FK
Sbjct: 277 QIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYT 336
Query: 102 --------------LREKNL----FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+R++N+ W+++I G A G + EAL F +MI + EPN V
Sbjct: 337 QSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSV 396
Query: 144 TFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPEVEH---YGCMVDLLSKAG 192
T IS+LSAC G + +G ++ LS+ + + E Y ++D+ SK
Sbjct: 397 TIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCR 456
Query: 193 LLEDALELIRS-SKFQPNAVIWGALLGG 219
+ A + S + + N V W ++GG
Sbjct: 457 SFKAARSIFDSIPRRERNVVTWTVMIGG 484
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ + + A+ M +G PD T+ L AC L + GR +H +
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLIC 176
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHE 125
GF+ +V++ +ALV MY++CGSL+ + LVF ++ K ++ WNSI+
Sbjct: 177 CNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236
Query: 126 ALAMFDRM---IYE---NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV- 178
AL +F M ++E N + ++ +++L AC + + + Y+I
Sbjct: 237 ALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQ-----IKEIHSYAIRNGTF 291
Query: 179 -EHYGC--MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + C ++D +K G + DA+++ +F+ + V W A++ G
Sbjct: 292 ADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK-DVVSWNAMVTG 334
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SWT+M++ Y + + +EALD F++M+ +G PD ++ +L AC+H G +D G
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634
Query: 61 REIHLYVMQIGFDIDVYIGSA-----LVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSII 114
+ +M+ +D+ + SA ++D+ A+CG LD++ ++ E + W +++
Sbjct: 635 LN-YFDIMRRDYDV---VASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALL 690
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSA 151
VH A ++++ E +G T IS + A
Sbjct: 691 SACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYA 728
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 208/328 (63%), Gaps = 3/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP ++I+SW+ MI CY++N+ +AL+ F M + P+ +TM +VL ACA L AL+
Sbjct: 240 MPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALE 299
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ +H YV++ G D + + + L+ MY +CG + VF ++++++ WNS+I
Sbjct: 300 HGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYG 359
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG +A+ +F+ MI V P+ +TFI+VL AC+HAGLVEE + F SM Y I P +
Sbjct: 360 MHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRM 419
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVD+L +A L++A+ELI++ F+P +WG+LLG C++H N+E+A A L
Sbjct: 420 EHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFE 479
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YA+ W +V ++R ++ G++K P SWIE++RK+Y + +
Sbjct: 480 LEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQK-IPSCSWIEVKRKIYSLVSIE 538
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPE 326
+ +P +E+ + L L ++K YVP+
Sbjct: 539 EYNPQIEELCAFLITLLTEIKNQGYVPQ 566
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
+P + T ++++C +L G ++H ++ G D D Y+ + L++MY GS+D +
Sbjct: 71 NPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACK 130
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
VF + REK +F WN+I LA+ + L ++ +M + + N T+ VL AC
Sbjct: 131 VFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACV 186
>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
Length = 720
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 200/326 (61%), Gaps = 3/326 (0%)
Query: 5 DIISWTTMITCYSQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
D++ W TMI+ YSQNK+ EAL+ F +M+ +G PD + +SAC++L + G++
Sbjct: 307 DLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQF 366
Query: 64 HLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H M+ + + + +ALV MY+KCG+L + +F ++ + N NSII G A HG
Sbjct: 367 HALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGI 426
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E+L +F++M+ ++ P +T +S+LSAC H G VEEG++ F M + I PE EHY
Sbjct: 427 GTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYS 486
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL +AG L +A LI + F P + W ALLG C+ + N+E+A A N+ + LEP
Sbjct: 487 CMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPT 546
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N+ +L +MY+ +W E +IR M++ GI K+ PG SWIE+ ++V+ F A D SHP
Sbjct: 547 NAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKK-PGCSWIELNKRVHVFVAEDNSHP 605
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELE 328
EI+ L ++ ++K A YVP++
Sbjct: 606 RIKEIHMYLDEMFVKMKRAGYVPDVR 631
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD +SW +MI Y Q+K+ +AL + +M + G D T+A+VL+ + + L G +
Sbjct: 204 RDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQF 263
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGS-LDRSLLVFFKLREKNLFCWNSIIEGLAVHG- 121
H ++ GF+ + ++GS L+DMYAKCG+ + S VF ++ +L WN++I G + +
Sbjct: 264 HAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKE 323
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI-TPEVEH 180
+ EAL F +M P+ +F+ +SAC++ +G ++F ++ I + ++
Sbjct: 324 LSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG-KQFHALAMKSEIPSNQISV 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + SK G L+DA +L + Q N V +++ G H
Sbjct: 383 NNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQH 424
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDL 59
+P D++S+ T+I Y+ AL F EM+ G+ D T + V++AC H+G L
Sbjct: 100 IPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVG---L 156
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGL 117
R++H GFD V + ++L+ Y+K G L+ + +VF + E ++ WNS+I
Sbjct: 157 IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAY 216
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE--GRRRFLSMTCGYSIT 175
H +ALA++ M++ E + T SVL+ + VE+ G +F +
Sbjct: 217 GQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFS---CVEDLSGGLQFHAKAIKTGFN 273
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
++D+ +K G + + V+W ++ G ++ L +
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSV 326
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + ++ ++I Y+Q+ E+L+ F +M + I+P +T+ ++LSACAH G ++ G
Sbjct: 406 MPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEG 465
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRS 95
++ + I G + + S ++D+ + G L +
Sbjct: 466 KKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEA 501
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 36/183 (19%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L +C L G+ +H ++ Y+ + + +Y+KC L + F + E N
Sbjct: 14 ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73
Query: 107 LFCWNSIIEGLAVHGFAH-------------------------------EALAMFDRMIY 135
+F +N++I A H AL++F M
Sbjct: 74 VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133
Query: 136 ENVEPNGVTFISVLSA-CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
+ +G TF V++A C H GL+ R+ S+ V ++ SK G+L
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLI----RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189
Query: 195 EDA 197
E+A
Sbjct: 190 EEA 192
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 200/325 (61%), Gaps = 1/325 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+ WT+MI Y QN + +AL + M+ GI P+++TMA+VL AC+ L AL+ G++IH
Sbjct: 375 DIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIH 434
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ GF ++V IGSAL MYAKCG L LVF ++ +++ WN++I GL+ +G
Sbjct: 435 ARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGK 494
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F+ M E +P+ VTF+++LSAC+H GLVE G F M + + P VEHY CM
Sbjct: 495 EALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACM 554
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+LS+AG L++A+E S+ +W +LG C+ +RN E+ A +LM L S
Sbjct: 555 VDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQES 614
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
LL ++Y+ + RW +V ++R MK G+ K PG SWIE++ V+ F D+ HP
Sbjct: 615 SAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKE-PGCSWIELKSGVHVFVVKDQMHPQI 673
Query: 305 DEIYSSLSKLDEQLKLASYVPELEA 329
+I+ L +L +Q+K Y P ++
Sbjct: 674 GDIHVELRQLSKQMKDEGYEPATDS 698
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 150/279 (53%), Gaps = 8/279 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ I+W+ MIT Y+Q+ +AL F+ M SGI P + T V++AC+ LGA G+++
Sbjct: 273 KNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQV 332
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y++++GF+ +Y+ +ALVDMYAKC S+ + F L+E ++ W S+I G +G
Sbjct: 333 HDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGEN 392
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL+++ RM E + PN +T SVL AC+ +E+G ++ + T Y EV
Sbjct: 393 EDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQG-KQIHARTVKYGFGLEVPIGSA 451
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ + +K G L+D + R + + + W A++ G + + A + + E M LE
Sbjct: 452 LSTMYAKCGCLKDGTLVFRRMPAR-DVISWNAMISGLSQNGCGKEA-LELFEEMQLEGTK 509
Query: 244 SGYCTLLLNMYAEVSRWAEVTK----IRVAMKELGIEKR 278
Y T +N+ + S V + R+ E G++ R
Sbjct: 510 PDYVT-FVNILSACSHMGLVERGWGYFRMMFDEFGMDPR 547
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 130/250 (52%), Gaps = 16/250 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW TMI+ Y+ K EAL F M+ ++ +VLSA ++ G
Sbjct: 169 MPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNG 228
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ G V +G+ALV MYAKCGSLD +L F +KN W+++I G A
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQS 288
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G + +AL +F M + P+ TF+ V++AC+ G EG++ +L + G+ ++
Sbjct: 289 GDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYL-LKLGFE--SQI 345
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG----------CKLHRNLEI 228
+VD+ +K + DA + + +P+ V+W +++GG L+ +E+
Sbjct: 346 YVMTALVDMYAKCSSIVDARKGFDYLQ-EPDIVLWTSMIGGYVQNGENEDALSLYGRMEM 404
Query: 229 AHIAVNELMI 238
I NEL +
Sbjct: 405 EGILPNELTM 414
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 4/218 (1%)
Query: 4 RDIISWTTMITCYSQN--KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
+D++SW +I YSQ+ ++ F M+ +P+ T A V +A + L GR
Sbjct: 69 KDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGR 128
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H +++ DV++GS+L++MY K G + VF + E+N W ++I G A
Sbjct: 129 LAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQK 188
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A EAL +F M E N F SVLSA T LV G ++ + + V
Sbjct: 189 LAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNG-KQIHCIAVKNGLLSIVSVG 247
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + +K G L+DAL+ +S N++ W A++ G
Sbjct: 248 NALVTMYAKCGSLDDALQTFETSS-DKNSITWSAMITG 284
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPARD+ISW MI+ SQN +EAL+ F EM+ G PD VT +LSAC+H+G ++ G
Sbjct: 472 MPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+ + G D V + +VD+ ++ G L ++
Sbjct: 532 WGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAI 568
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98
P + T L H +L G+ +H +++ VYI ++LV++YAKC L + V
Sbjct: 4 PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFV 62
Query: 99 FFKLREKNLFCWNSIIEGLAVHG--FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
F +++ K++ WN II G + HG + + +F RM EN PN TF V +A +
Sbjct: 63 FERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAST-- 120
Query: 157 LVE-EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215
LV+ G R ++ +V ++++ KAGL +A ++ + + N+V W
Sbjct: 121 LVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWAT 179
Query: 216 LLGG 219
++ G
Sbjct: 180 MISG 183
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 196/325 (60%), Gaps = 5/325 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM---KNSGISPDQVTMATVLSACAHLGAL 57
MP RD++SW T++ Y + REAL F +M + + P+ TM+T+L ACA G L
Sbjct: 207 MPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 266
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEG 116
+ G +H Y+ + + D Y+ L+DMY KCGS+D +L VF K R+K+LF W ++I G
Sbjct: 267 ETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICG 326
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
LA+HG +AL MFD M + P+ VT + VL+AC H GLV+EG F SM + ITP
Sbjct: 327 LAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITP 386
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++EHYGCM+DLL + G L++A +IR+ PN VIWGA L CK+H N+E+ IA EL
Sbjct: 387 KIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEEL 446
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
L+P++ +L +MYA+ W + + R M + + K+ PG S IE++ +V++F A
Sbjct: 447 TRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQV-KKTPGCSSIELKGEVHEFVA 505
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLA 321
HP EI S L ++ Q +
Sbjct: 506 GGSQHPQYAEICSVLQDVEAQTNVG 530
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 55/269 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL--- 57
MP + ++ T M + + Q +A+ F +M G+ PD V +A L AC G+
Sbjct: 71 MPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTAR 130
Query: 58 -DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE- 115
+ G+ IH V+ G DV++ + L+ +Y + G L S VF + ++ WN+++
Sbjct: 131 RNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQ 190
Query: 116 ------------------------------GLAVHGFAHEALAMFDRMIYEN---VEPNG 142
G V G EAL +F +M+ + V PN
Sbjct: 191 YARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNV 250
Query: 143 VTFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
T ++L AC AG +E G R R GY C++D+ K G +
Sbjct: 251 PTMSTILGACAGAGCLETGIWVHAYIERNRMNDD--GYLDR-------CLIDMYCKCGSI 301
Query: 195 EDALELIRSSKFQPNAVIWGALLGGCKLH 223
++AL++ + + + W ++ G +H
Sbjct: 302 DNALQVFEKAPRKKDLFSWTTVICGLAMH 330
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 52 AHLGALDLGREIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCW 110
AHL A IH +++ G + ++ +AL+ YA GS D + +F ++ E+ L
Sbjct: 24 AHLSA----SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPR 79
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLS 167
++ G A +A+A+F M+ + V P+ V L AC AG R + +
Sbjct: 80 TAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHA 139
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ I P+V ++ + ++G L + + + + + W A+L H ++
Sbjct: 140 LVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSR-STITWNAMLHQYARHGKVD 198
Query: 228 IAH---IAVNELMILEPNN--SGYC 247
A+ +A+ ++ N +GYC
Sbjct: 199 TAYEMFLAMPRRDVVSWNTVLAGYC 223
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 204/326 (62%), Gaps = 8/326 (2%)
Query: 1 MPA--RDIISWTTMITCYSQNKQFREALDAFNEMKN---SGISPDQVTMATVLSACAHLG 55
MPA RD++SW +++ +SQN +ALD ++ M+ G+ PD VT+ +VLS+CAHLG
Sbjct: 227 MPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLG 286
Query: 56 ALDLGREIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
A +G + Y+ GF +V + +AL++ YA+CG L ++ +F ++ K++ W ++
Sbjct: 287 ARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTAL 346
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G +HG A+ +F M+ E + P+ V + +LSAC+HAG+ +EGR+ F +M Y
Sbjct: 347 ITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQ 406
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ P +EHY CMVDLL +AG L++A ELI S + +WGALLG CK+H+N+EI A
Sbjct: 407 LRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAF 466
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
++ +EP N GY L+ N+Y + + V ++R M+E G++K PG S++E + +V+
Sbjct: 467 EHVIEVEPTNVGYYVLMANIYTDTGQLDCVVRVRAMMRERGLKKE-PGCSYVEHKGRVHL 525
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLK 319
F A D SHP + IY + KL++ +K
Sbjct: 526 FMADDHSHPQAKRIYELVLKLEQMVK 551
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 18/232 (7%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
F M+ +G+ D VT+ T++ A + ++H + G + + + L+ +YA+
Sbjct: 159 FRRMRVAGVRFDAVTLLTLVPA----APPSVVPQLHALAARAGLAAETSVANCLISVYAR 214
Query: 89 CG-SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI---YENVEPNGVT 144
G +L R + ++L WN+++ + +G A +AL ++ RM VEP+ VT
Sbjct: 215 RGAALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVT 274
Query: 145 FISVLSACTHAGLVEEG---RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
+SVLS+C H G G R G+ V+ +++ ++ G L A +L
Sbjct: 275 LVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTN--VQLCNALINFYARCGCLPQAQQLF 332
Query: 202 RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
+ + V W AL+ G +H + E+A I + + M+ E P+N LL
Sbjct: 333 NEMP-RKSIVSWTALITGYGMHGHGEVA-INLFQTMVSEGIRPDNVAMVGLL 382
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W+ + ++ + R+AL + S P + + + +CA L +IH
Sbjct: 31 WSARVRSLTRLGRHRDALALLRDGDPSP-PPHALALPATVISCAALSLPSGVSQIHALGS 89
Query: 69 QIGF--DIDVYIGSALVDMYAKCGSLD--RSLLVFFKL--REKNLFC--WNSIIEGLAVH 120
+ G D Y+ SAL+ Y++ G L LL L C +NS+I G A+H
Sbjct: 90 KRGLLPSSDAYLVSALLSSYSRLGLLPCAHQLLDEMPLASTPPATLCTAFNSLISGCALH 149
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
A+F RM V + VT ++++ A
Sbjct: 150 ALPAACFALFRRMRVAGVRFDAVTLLTLVPA 180
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 207/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W +MI Y +N + + L F M S + P+ +++++VL C++L AL LG
Sbjct: 255 MAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG 314
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H V + D ++L+ MY KCG LD + +F ++ K++ WN++I G A H
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQH 374
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD+M ++P+ +TF++V+ AC HAG V+ G + F SM + I + H
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL +AG L++A+ LI+ F P+A I+G LLG C++H+NL++A A L+ L+
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLD 494
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++ L N+YA ++W +V K+R MKE + K PG SWIE++ ++F +SD+
Sbjct: 495 PTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVK-IPGYSWIEIKSVTHEFRSSDRL 553
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L++LD ++KLA YVP+LE L
Sbjct: 554 HPELTSIHKKLNELDGKMKLAGYVPDLEFAL 584
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DI SW T+I+ ++QN Q ++A D F+ M + V+ + ++S G L+
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDLEAA 217
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E++ +G V + +A++ Y K G ++ + +F ++ KNL WNS+I G +
Sbjct: 218 EELY---KNVGMK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVEN 273
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
A + L +F MI V PN ++ SVL C++ + G R+ + ++ +
Sbjct: 274 CRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLG-RQMHQLVSKSPLSKDTTA 332
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G L+ A +L + + + W A++ G H
Sbjct: 333 CTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNAMISGYAQH 374
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 196/298 (65%), Gaps = 4/298 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA++II+W TM+ + QN+ + E LD F+EMK + PD +T+ VLSACAH G+L G
Sbjct: 204 MPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKG 263
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H+Y + G ++ +AL+DMYAKCGS+ + L VF+K + K+++CWN++I GLA+H
Sbjct: 264 TEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALH 323
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + AL +F++M + P+ +TFI +LSAC+H+GLV+EG + F SM + I+P++EH
Sbjct: 324 GHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEH 383
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+A L+ AL+LI++ F+P I GALL C +H++LE+ V +L+
Sbjct: 384 YGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGALLSACIVHQDLEVGERVV-KLVSSR 442
Query: 241 PN--NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
N + G + N+YA +W E K R M + GI K G S +E+ K ++F A
Sbjct: 443 GNYLSDGELMMFSNLYASCGQWEEANKWREMMNDTGIVKT-AGFSVVEVNGKFHKFLA 499
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W +++ Y+ Q +AL FN M +S + ++S + +G
Sbjct: 111 MPVKDVVAWNSILDAYASTDQMDDALKVFNSMPLKDLS----SFNIMISGYSSIGKTLSA 166
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R I FD D+ ++++ Y + ++R+ +F ++ KN+ WN++++G
Sbjct: 167 RSI--------FDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKG 218
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSIT 175
+ E L +FD M N P+ +T VLSAC H+G +++G ++ G + +
Sbjct: 219 FLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASS 278
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
P V ++D+ +K G ++ L++ S+ + + W AL+ G LH
Sbjct: 279 PHVT--TALIDMYAKCGSIQQGLQVFYKSQVK-DIYCWNALISGLALH 323
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 97/219 (44%), Gaps = 10/219 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P+ ++ W +I + N +A+ + ++ G D T +L A + +G
Sbjct: 10 LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++ GF V++ +AL++MY + + VF K+ K++ WNSI++ A
Sbjct: 70 LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL +F+ M +++ +F ++S + G R F +M ++
Sbjct: 130 DQMDDALKVFNSMPLKDLS----SFNIMISGYSSIGKTLSARSIFDNMA-----EKDIVS 180
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+ + +E A +L R + N + W ++ G
Sbjct: 181 WNSMISAYIQGEDMERACDLFREMPAK-NIITWNTMVKG 218
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RB++ W+ +I +++N + E++ F +M ++P+ VT A+++ AC+ LG+L GR +
Sbjct: 215 RBVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSV 274
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+++ G ++DV ++ +DMYAKCG + + VF ++ EKN+F W+++I G +HG
Sbjct: 275 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 334
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M N PN VTF+SVLSAC+H+G +EEG F SM+ Y ITP EHY C
Sbjct: 335 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYAC 394
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG +++AL I + +P A WGALLG C++HR E+A +L+ LE +
Sbjct: 395 MVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQ 454
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG +L N+YA+V W V K R+ M E G+ K G + IE++ K+Y F++ D+
Sbjct: 455 SGVYVMLSNIYADVGMWEMVKKTRLKMCEKGLLK-IVGFTSIEIKEKLYLFSSEDRFAYK 513
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +I S + L E+++ YVP+L +L
Sbjct: 514 NTQIESLWNSLKERMRELGYVPDLRFVL 541
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 53/336 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ + W MI Y + + F+ M+ SG D + ++ AC ++ A G
Sbjct: 123 VPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEG 182
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H +Y S V Y G LD +L +F + +B+ W++II G A +
Sbjct: 183 KTFH----------GLYFSSGYV--YEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFARN 230
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE- 179
G A E+++MF +M+ ++V PN VTF S++ AC+ G +++GR GY I VE
Sbjct: 231 GRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRS-----VHGYMIRNGVEL 285
Query: 180 ---HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+Y +D+ +K G + A + + N W ++ G +H
Sbjct: 286 DVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMINGFGMH------------- 331
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
G C LN++ E+ V ++ ++ + + C S IE ++ +
Sbjct: 332 --------GLCAEALNLFYEMR---SVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMS 380
Query: 297 SDKSHPASDEIYSSL-------SKLDEQLKLASYVP 325
D +E Y+ + K+DE L + +P
Sbjct: 381 RDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMP 416
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 22/252 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ SW T++ +S+NK F + L F M G D + + AC L + H
Sbjct: 26 NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFH 85
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ + D Y+ AL+++Y + GSL+ + VF ++ KN W +I+G
Sbjct: 86 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGYLNFSEEF 145
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGC 183
+F RM E + ++ AC + +EG+ L + GY EV
Sbjct: 146 GVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLYFSSGY--VYEVR---- 199
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG-CKLHRNLEIAHIAVNELMI---L 239
G L+ AL L ++ B V+W A++ G + R LE I++ M+ +
Sbjct: 200 --------GFLDXALXLFEXIXYR-BVVVWSAIIAGFARNGRALE--SISMFRQMLADSV 248
Query: 240 EPNNSGYCTLLL 251
PN+ + +++L
Sbjct: 249 TPNSVTFASIVL 260
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
Y + GSL + F + +NL WN+I+ + + ++ L +F RM+ E +
Sbjct: 6 YIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNL 65
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
+ + AC L +G + F S+ + + ++++ ++ G LE+A ++
Sbjct: 66 VFAVKACFGLSLF-QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVP 124
Query: 206 FQPNAVIWGALLGG 219
+ N+VIWG ++ G
Sbjct: 125 LK-NSVIWGVMIKG 137
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 214/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
MP ++I+SW T+I+ Q + EA++ F+ M++ ++ D VTM ++ SAC HLGALDL
Sbjct: 428 MPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDL 487
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ I+ Y+ + +DV +G+ LVDM+++CG + ++ +F L +++ W + I +A+
Sbjct: 488 AKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 547
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+ +F+ MI + ++P+GV FI L+AC H GLV++G+ F SM + ++PE
Sbjct: 548 AGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDV 607
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLLE+AL+LI+ +PN VIW +LL C++ N+E+A A ++ +L
Sbjct: 608 HYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVL 667
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P +G LL N+YA RW ++ K+R++MKE G+ K PG+S I++ K ++F + D+
Sbjct: 668 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP-PGTSVIQIRGKTHEFTSGDE 726
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +I + L +L ++ +VP+L +L
Sbjct: 727 SHPEMRKIEAMLDELSQRASDLGHVPDLSNVL 758
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I Y+ + +EA+ F M NSGISPD+ T LS CA G +IH ++
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++ + D+++ ++LV YA+CG LD + VF ++ E+N+ W S+I G A FA +A+
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220
Query: 129 MFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
+F RM+ E+V PN VT + V+SAC +E G + +
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVY 258
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M R+++SWT+MI Y++ + ++A+D F M ++ + P+ VTM V+SACA L L+
Sbjct: 194 MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET 253
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +++ ++ G +++ + SALVDMY KC ++D + +F + NL N++
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
G EAL + + M+ + P+ ++ +S +S+C+
Sbjct: 314 QGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQ 348
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
M + Y + +EAL N M +SGI PD+++M + +S+C+ L + G+ H YV++
Sbjct: 305 NAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLR 364
Query: 70 IGFDIDVYIGSALVDMYAKC-------------------------------GSLDRSLLV 98
GF+ I +AL+DMY KC G +D +
Sbjct: 365 NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWET 424
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGL 157
F + EKN+ WN+II L EA+ +F M E V +GVT +S+ SAC H G
Sbjct: 425 FNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGA 484
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
++ + + + I +V +VD+ S+ G E A+ + S
Sbjct: 485 LDLAKWIYYYIE-KNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 529
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89
N+ K + +P + L C + L + HL + + G D DV + LV +
Sbjct: 26 NQSKRTKATP------SSLKNCKTIDELKM---FHLSLTKQGLDDDVSAITKLVARSCEL 76
Query: 90 GSLDRSLLVFFKLREKN------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
G+ R L F K +N F +NS+I G A G EA+ +F RM+ + P+
Sbjct: 77 GT--RESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKY 134
Query: 144 TFISVLSACTHA 155
TF LS C +
Sbjct: 135 TFPFGLSVCAKS 146
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 207/324 (63%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ +W+ MI Y++N F +A+D F MK G+ ++ M +V+S+CAHLGAL+ G
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H YV++ +++ +G+ALVDMY +CG +++++ VF +L +K+ W+SII+GLAVH
Sbjct: 271 ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVH 330
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH+A+ F +M+ P +T +VLSAC+H GLV++G + +M Y I P +EH
Sbjct: 331 GHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEH 390
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+L +AG L +A I +PNA I GALLG CK+++N E+A N L+ ++
Sbjct: 391 YGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVK 450
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA-ASDK 299
P +SGY LL N+YA +W ++ +R MKE + K+ PG S IE++ K+ +F+ D+
Sbjct: 451 PEHSGYYVLLSNIYACAGQWEKLESLRDIMKE-KLVKKPPGWSLIEIDGKINKFSMGDDQ 509
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
HP +I ++ +++L Y
Sbjct: 510 KHPEMGKIKRLWEEILGKIRLIGY 533
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 121/261 (46%), Gaps = 36/261 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + +I C+S + +A + +M S I PD +T ++ A + + +G + H
Sbjct: 83 NLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTH 142
Query: 65 LYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLD 93
+++ GF DVY+ ++LV MYA KCG ++
Sbjct: 143 SQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVE 202
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ +NLF W+ +I G A + +A+ +F+ M E V N +SV+S+C
Sbjct: 203 DAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCA 262
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G R + + +T + +VD+ + G +E A+ + +++ W
Sbjct: 263 HLGALEFGERAHEYVVKSH-MTVNLILGTALVDMYWRCGEIEKAIRVFEELP-DKDSLSW 320
Query: 214 GALLGGCKLHRNLEIAHIAVN 234
+++ G +H + AH A++
Sbjct: 321 SSIIKGLAVHGH---AHKAIH 338
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 29/212 (13%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM---------YAKCGSLDRSLL 97
+L +C+ L + IH ++++ DV++ S L+ + + L +
Sbjct: 18 LLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYG 74
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+F +++ NLF +N +I + +A + +M+ + P+ +TF ++ A T
Sbjct: 75 IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134
Query: 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
V G + S + +V +V + + GL+ A + F+ + V W +++
Sbjct: 135 VVVGEQTH-SQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFR-DVVSWTSMV 192
Query: 218 GG-CKL--------------HRNLEIAHIAVN 234
G CK HRNL I +N
Sbjct: 193 AGYCKCGMVEDAREMFDEMPHRNLFTWSIMIN 224
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ISWT M+ Y QN EA+ F +M+ + I PD T+ +V+S+CA+L +L+ G
Sbjct: 331 MRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG 390
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H + G V + +AL+ +Y KCGSL+ + +F +++ ++ W +++ G A
Sbjct: 391 AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQF 450
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+E +++F+ M+ + P+GVTF+ VLSAC+ AGLVE+G F M + ITP +H
Sbjct: 451 GKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDH 510
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DLLS+AG LE+A I F P+A+ W LL C+L+ NLEI A L LE
Sbjct: 511 YTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLE 570
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N LL ++YA +W +V K+R M+E+G++K PG SWI+ + KV+ F+A D+S
Sbjct: 571 PQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKE-PGHSWIKYKNKVHIFSADDRS 629
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
P SD+IY+ L L ++ YVP++ +L
Sbjct: 630 SPFSDQIYAKLESLYLKMIEEGYVPDMSFVL 660
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D ISWTT+IT +QN F+EA+D F EM G DQ T +VL+AC ALD G
Sbjct: 230 MPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEG 289
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+++ + ++++GSAL+DMY KC ++ + VF K+R KN+ W +++ G +
Sbjct: 290 KQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQN 349
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EA+ +F M + P+ T SV+S+C + +EEG +F + V
Sbjct: 350 GYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG-AQFHGQALASGLICFVTV 408
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ L K G LE A +L K + + V W AL+ G
Sbjct: 409 SNALITLYGKCGSLEHAHQLFHEMKIR-DEVSWTALVSG 446
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP D++SW ++++ Y+ N E++ +N M K+ ++ +++T +T+L ++ G +DL
Sbjct: 97 MPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDL 156
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR+IH + + G+ +++GS LVDMYAK G ++ + +F ++ EKN+ +N++I GL
Sbjct: 157 GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
F EA +FD M E + +++ ++++ T GL +E +F M
Sbjct: 217 CRFIVEAEQLFDNM----PEKDSISWTTIITGLTQNGLFKEAVDKFKEM 261
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ + + ++ + L++ Y K G L + VF + + NLF WN+++ +
Sbjct: 25 KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ + +FD M +V V++ S+LS GL+ E R + M S+
Sbjct: 85 GYLQDMQRVFDSMPNHDV----VSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRIT 140
Query: 181 YGCMVDLLSKAGLLE 195
+ M+ L S G ++
Sbjct: 141 FSTMLILSSNRGFVD 155
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +R ++SW MI ++QN + +AL+ F++M++ + PD T +V++A A L
Sbjct: 398 LQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH VM+ D +V++ +ALVDMYAKCG++ + L+F + E+++ WN++I+G H
Sbjct: 458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF AL +F+ M ++PNGVTF+SV+SAC+H+GLVE G + F M YSI ++H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AG L +A + I +P ++GA+LG C++H+N+ A A L L
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ GY LL N+Y S W +V ++RV+M G+ K PG S +E++ +V+ F + +
Sbjct: 638 PDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK-TPGCSMVEIKNEVHSFFSGSTA 696
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S +IY+ L KL +K A YVP+ +L
Sbjct: 697 HPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T++ YSQN R AL+ M + P +T+ +VL A + L + +G
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y M+ GFD V I +ALVDMYAKCGSL+ + +F + E+N+ WNS+I+ +
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EA+ +F +M+ E V+P V+ + L AC G +E GR
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +MI Y QN+ +EA+ F +M + G+ P V++ L ACA LG L+ G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++G D +V + ++L+ MY KC +D + +F KL+ + L WN++I G A +
Sbjct: 357 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 416
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G +AL F +M V+P+ T++SV++A + + + +C + V
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC---LDKNV 473
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A LI + + W A++ G H
Sbjct: 474 FVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 4/210 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ +++ +AL F M+ + P +L C L +G+EIH ++
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +D++ + L +MYAKC ++ + VF ++ E++L WN+I+ G + +G A AL
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
M M EN++P+ +T +SVL A + L+ G+ +M G+ + +VD+
Sbjct: 223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS--TALVDM 280
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+K G LE A +L + N V W +++
Sbjct: 281 YAKCGSLETARQLF-DGMLERNVVSWNSMI 309
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
A +L C+ L L R+I V + G + + + LV ++ + GS+D + VF +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
K ++++++G A +AL F RM Y++VEP F +L C
Sbjct: 98 KLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 205/328 (62%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W MI+ Y +N + + L F M GI P+ +++ L C+ L AL LGR+I
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V + DV ++L+ MY KCG L + +F +++K++ WN++I G A HG A
Sbjct: 307 HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 366
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F MI + P+ +TF++VL AC HAGLV G F SM Y + P+ +HY C
Sbjct: 367 DKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTC 426
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG LE+AL+LIRS F+P+A ++G LLG C++H+N+E+A A +L+ L N
Sbjct: 427 MVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQN 486
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+ L N+YA +RW +V ++R MKE + K PG SWIE+ KV+ F +SD+ HP
Sbjct: 487 AAGYVQLANIYASKNRWEDVARVRKRMKESNVVK-VPGYSWIEIRNKVHHFRSSDRIHPE 545
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
D I+ L +L++++KLA Y PELE L
Sbjct: 546 LDSIHKKLKELEKKMKLAGYKPELEFAL 573
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W MI+ Y+Q+ +AL F EM ++ I PD +T VL AC H G +++G
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404
Query: 61 R---EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
E + ++ D Y + +VD+ + G L+ +L
Sbjct: 405 MAYFESMVRDYKVEPQPDHY--TCMVDLLGRAGKLEEAL 441
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 127/311 (40%), Gaps = 39/311 (12%)
Query: 1 MPARDIISWTTMITCYSQN-KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
M A++ I+W +++ S++ + EA F+E+ PD + +LS
Sbjct: 87 MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP----EPDTFSYNIMLSCYV------- 135
Query: 60 GREIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
R ++ Q FD D + ++ YA+ G ++++ +F+ + EKN WN++I
Sbjct: 136 -RNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMIS 194
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G G +A F V V + ++++ A VE F MT ++
Sbjct: 195 GYIECGDLEKASHFFKVAPVRGV----VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLV 250
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGCKLHRNLEIA--- 229
+ M+ + ED L+L R+ +PN+ + L GC L++
Sbjct: 251 T----WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289
H V++ + N+ T L++MY + + K+ MK+ + +W M
Sbjct: 307 HQIVSKSTLC--NDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV------VAWNAMIS 358
Query: 290 KVYQFAASDKS 300
Q +DK+
Sbjct: 359 GYAQHGNADKA 369
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 200/321 (62%), Gaps = 1/321 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++I+WTT+I+ +Q+ EA+ F +M+ +GI P ++ +VL AC + +L GR IH
Sbjct: 519 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 578
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ + F + V + ++LVDMYAKCGS+D + VF + K L +N++I A+HG A
Sbjct: 579 GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAV 638
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EALA+F + E +EP+ +TF S+LSAC+HAGLV EG F M +++ P +EHYGC+
Sbjct: 639 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCV 698
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LLS+ G L++AL LI + FQP+A I G+LL C+ H +E+ L LEP+NS
Sbjct: 699 VSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNS 758
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G L N YA RW EV+ +R MK G+ K PG SWI+ K+ F A D SHP +
Sbjct: 759 GNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKN-PGCSWIQTGGKLNVFVAGDGSHPKT 817
Query: 305 DEIYSSLSKLDEQLKLASYVP 325
+EIY+ L+ L +++ YVP
Sbjct: 818 EEIYAMLAMLLSEMRFMGYVP 838
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R++ SW ++ + +AL F EM+ +G+ PD + VL AC L + LG+ +
Sbjct: 145 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGV 204
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV+++GF V++ S+LVDMY KCG L+ + VF + EKN+ WNS+I G +G
Sbjct: 205 HGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLN 264
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ +F M E +EP VT S LSA + + EG++ ++ S+ +
Sbjct: 265 QEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGH-AIAILNSLDLDNILGSS 323
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+++ SK GL+EDA EL+ S + + V W L+ H +
Sbjct: 324 IINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLISSYVQHHQV 365
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 146/285 (51%), Gaps = 15/285 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W +I+ Y Q+ Q +AL+ + M++ + D VT++++LSA A + LG
Sbjct: 344 MLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLG 403
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E H Y ++ + DV + ++++DMYAKC +D + VF E++L WN+++ A
Sbjct: 404 KEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQV 463
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + EAL +F +M +++V PN +++ SV+ G V E + F M P +
Sbjct: 464 GLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQ-SLGFQPNLIT 522
Query: 181 YGCMVDLLSKAGLLEDAL---ELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH-----IA 232
+ ++ L+++G +A+ + ++ + +P+ ++L C +L I
Sbjct: 523 WTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFIT 582
Query: 233 VNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM--KELGI 275
+E + P T L++MYA+ E K+ M KEL I
Sbjct: 583 RHEFCLSVP----VATSLVDMYAKCGSIDEAKKVFHMMSSKELPI 623
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W +MI Y QN +EA+D F +M+ GI P +VT+A+ LSA A+L AL G
Sbjct: 243 MVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEG 302
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H + D+D +GS++++ Y+K G ++ + LVF ++ EK++ WN +I H
Sbjct: 303 KQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQH 362
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL M M EN+ + VT S+LSA ++ G+ ++ +V
Sbjct: 363 HQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGH-CYCIRRNLESDVVV 421
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K ++DA ++ S+ + + V+W LL
Sbjct: 422 ANSIIDMYAKCERIDDARKVFDSTT-ERDLVLWNTLLAA 459
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 10/217 (4%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S+ I+ ++ +E++ +EM+ +L C + AL G++IH +
Sbjct: 46 SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 105
Query: 68 MQIG--FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++ G F + Y+ + LV YAKC + ++ +F +LR +N+F W +I+ GF+ +
Sbjct: 106 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 165
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITPEVEHYG 182
AL F M V P+ +VL AC L+ G+ L M G +
Sbjct: 166 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVS----S 221
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G+LEDA ++ S + N V W +++ G
Sbjct: 222 SLVDMYGKCGVLEDARKVF-DSMVEKNVVTWNSMIVG 257
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++ + MI+ Y+ + Q EAL F ++ GI PD +T ++LSAC+H G ++ G
Sbjct: 616 MSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEG 675
Query: 61 REIHL-YVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+ V + + + +V + ++CG+LD +L
Sbjct: 676 LNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEAL 712
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 205/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
M RD +SW+T+I + N EALD F +M+ + PD+VTM +V+SA +HLG L+L
Sbjct: 145 MSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLEL 204
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR + ++ ++G + V +G+AL+DM+++CGS+D S++VF K+ +N+ W ++I GL V
Sbjct: 205 GRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGV 264
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG + EALAMF M V+P+ VTF VL AC+H GLV+EG F S+ Y + P ++
Sbjct: 265 HGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLD 324
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+L +AGLL +A + + +PN++IW LLG C H NL +A ++ +
Sbjct: 325 HYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKI 384
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ +G LL N+Y RW E IR M+E I K PG S I +++ +++F + D
Sbjct: 385 SSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKE-PGCSSINVDQTIHEFVSGDN 443
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S++I LS + L+ Y+ + + +L
Sbjct: 444 SHPQSEDITKFLSSIIGDLRNRGYMMQTKNVL 475
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 129/227 (56%), Gaps = 13/227 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P+ D I++ T+I +S+ +L F M+++GI D T VL AC+ L +
Sbjct: 48 IPSPDTIAYNTIIRSHSRFFP-SHSLFYFFSMRSNGIPLDNFTFPFVLKACSRL---QIN 103
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++ G D D+++ +AL+ +Y CGSL+ ++ VF ++ E++ W+++I +
Sbjct: 104 LHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNN 163
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGR--RRFLS-MTCGYSITP 176
G+A EAL +F++M E+ V P+ VT +SV+SA +H G +E GR R F+ + G S+
Sbjct: 164 GYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVAL 223
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ S+ G +++++ + + N + W AL+ G +H
Sbjct: 224 GT----ALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGVH 265
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 198/318 (62%), Gaps = 2/318 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ SWT MI+ Y+Q EA+ F M+ + PD++ + VLSACA LGAL LG I
Sbjct: 207 KDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWI 266
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + V + ++L+DMYAK G++ ++L +F ++ K + W ++I GLA+HG
Sbjct: 267 HNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLG 326
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F M E+ V+PN VTFI++LSAC+H GLVE GR F SM Y I P++EHYG
Sbjct: 327 KEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYG 386
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DLL +AG L++A E++ F+ NA IWG+LL + E+A A+ L +LEP
Sbjct: 387 CMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGDAELAEEALRHLTVLEPG 446
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+ G +LL N YA + RW E +R M++ G+EK PG S+IE+ VY+F A DK
Sbjct: 447 HCGNYSLLSNTYASLGRWNESRMVRKVMQDAGVEK-VPGVSFIEVNNIVYEFIAGDKLSI 505
Query: 303 ASDEIYSSLSKLDEQLKL 320
+IY L LD Q+K+
Sbjct: 506 YFVDIYDVLHSLDGQIKI 523
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 39/241 (16%)
Query: 16 YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
YS N + A+ F ++ G+S D ++ VL + L LG++IH + G D +
Sbjct: 89 YSSNAKL--AVSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTGLDKN 146
Query: 76 VYIGSALVDMYA-----------------------------KCGSLDRSLLVFFKL--RE 104
V + S+L+ MY+ K G + + +F + R+
Sbjct: 147 VSVCSSLIQMYSCYDVCSARKLFDEFGGNGCVLNAMIVAYVKVGDVSNARKLFDSMLERD 206
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-- 162
K++F W ++I G +EA+ +F RM ENV+P+ + ++VLSAC G + G
Sbjct: 207 KDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWI 266
Query: 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222
++ + ++ V Y ++D+ +K+G + ALEL + K + + W ++ G L
Sbjct: 267 HNYIE---KHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHK-TIITWTTMIAGLAL 322
Query: 223 H 223
H
Sbjct: 323 H 323
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M + II+WTTMI + + +EAL F+ M K + P++VT +LSAC+H+G ++L
Sbjct: 305 MKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVEL 364
Query: 60 GREIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSII 114
GR+ + M+ + I+ I ++D+ + G L + + ++ E N W S++
Sbjct: 365 GRD-YFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLL 421
>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
Length = 1056
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 210/333 (63%), Gaps = 8/333 (2%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKN---SGISPDQVTMATVLSACAHLG 55
MP +RD++SW +++ ++QN +ALD + M++ SG+ PD VT+ VLS+ AHLG
Sbjct: 635 MPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLG 694
Query: 56 ALDLGREIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
A +G + YV+Q GF +V + +AL++ +A+CGSL R+ +F ++ K++ W ++
Sbjct: 695 ARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTAL 754
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
I G +HG A+++F+RM+ E + P+ V + VLSAC+HAGL +EGR F +M Y
Sbjct: 755 ITGHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYK 814
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
+ P +EHY C+VDLL +AG LE+A ELI S + +WGALLG CK+H+N+EI A
Sbjct: 815 LRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAF 874
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
++ LEP N GY L+ N+Y + + V ++R M++ G++K PG S++E +V+
Sbjct: 875 ARVVELEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKE-PGCSYVEHNGRVHL 933
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLKLASYVPE 326
F A D SHP + IY +++L+ +K S V E
Sbjct: 934 FMADDHSHPQARRIYELVTRLELMVKEKSGVRE 966
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 21/228 (9%)
Query: 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88
F M+ + D VT+ ++ A L + ++H Q+G + + + L+ YA+
Sbjct: 564 FRRMRAIAVRFDAVTLLALVPA----APLSVVPQVHALAAQVGLATETSVANCLMSTYAR 619
Query: 89 CG----SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY---ENVEPN 141
G +L R + L ++L WN+++ A +G A +AL ++ RM VEP+
Sbjct: 620 GGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPD 679
Query: 142 GVTFISVLSACTHAGLVEEG---RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198
VT + VLS+ H G G + G+ V+ +++ ++ G L A
Sbjct: 680 AVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTN--VQLCNALINFHARCGSLPRAQ 737
Query: 199 ELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNN 243
+L + + V W AL+ G +H N +A +++ E M+ E P+N
Sbjct: 738 QLFDEMPAK-SIVSWTALITGHGMHGNGGVA-VSLFERMVSEGIHPDN 783
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 192/308 (62%), Gaps = 1/308 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++ISWT+MI + + +EAL +M +GI PD++T++ LSACA LGAL+ G
Sbjct: 203 MPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQG 262
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + ID +G AL+DMY KCG + ++LLVF KL +K ++ W +II G AVH
Sbjct: 263 KWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVH 322
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL F +M ++P TF +VL+AC+H GLVEEG+ F SM+ Y++ P +EH
Sbjct: 323 GKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEH 382
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L++A E + S +PNA IWG+LL C LH++LE+ L+ L+
Sbjct: 383 YGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELD 442
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G L +++A W E +++R +K G+ PG S I + ++F A +
Sbjct: 443 PEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGL-LNLPGCSTITLNGVAHEFFAGAEP 501
Query: 301 HPASDEIY 308
HP E+Y
Sbjct: 502 HPHVREMY 509
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 37/252 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ + W TMI YS + EAL +++M + I + T +L AC+ L AL +IH
Sbjct: 75 NTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIH 134
Query: 65 LYVMQIGFDIDVYIGSAL-------------------------------VDMYAKCGSLD 93
+ +++ GF +VY ++L +D Y KCG+++
Sbjct: 135 VQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVE 194
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F + EKN+ W S+I G G EAL + +M+ ++P+ +T LSAC
Sbjct: 195 MAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACA 254
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNAV- 211
G +E+G +++ G + GC ++D+ K G ++ AL + SK + V
Sbjct: 255 GLGALEQG--KWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVF--SKLEKKCVY 310
Query: 212 IWGALLGGCKLH 223
W A++GG +H
Sbjct: 311 TWTAIIGGFAVH 322
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLR 103
++L C+++G L ++IH +++ G S L+ YA + +L + +VF ++
Sbjct: 16 SLLERCSNIGEL---KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRIS 72
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
N WN++I + EAL ++ +M++ ++ N TF +L AC+
Sbjct: 73 SPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACS 122
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 201/327 (61%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R +SW MI +QN +A+ F M+ + PD T+ +V+ A A + R I
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y +++ D DVY+ +AL+DMYAKCG ++ + ++F RE+++ WN++I G HGF
Sbjct: 386 HGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFG 445
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F+ M + PN TF+SVLSAC+HAGLV+EGR F SM Y + P +EHYG
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L++A I+ P ++GA+LG CKLH+N+E+A + ++ L P
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQE 565
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
Y LL N+YA S W +V ++R AM++ G++K PG S I+++ +++ F + +H
Sbjct: 566 GVYHVLLANIYANASMWKDVARVRTAMEKNGLQK-TPGWSIIQLKNEIHTFYSGSTNHQQ 624
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
+ EIYS L+KL E++K YVP+ +++
Sbjct: 625 AKEIYSRLAKLIEEIKAVGYVPDTDSI 651
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW MI Y+QN REAL FN M G+ V++ L AC LG LD G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++IG D +V + +AL+ MY+KC +D + VF +L + WN++I G A +
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + +A+ +F RM ENV+P+ T +SV+ A A + + + R++ GYSI ++
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL--ADISDPLQARWIH---GYSIRLHLDQ 396
Query: 181 ----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G + A L S++ + + + W A++ G H
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSAR-ERHVITWNAMIHGYGSH 442
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
MP RD ++W ++ Y++N R A++ M+ G PD +T+ +VL ACA+ AL
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE H + ++ G + V + +A++D Y KCG + + +VF + KN WN++I+G A
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G + EALA+F+RM+ E V+ V+ ++ L AC G ++EG R + + V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG-MRVHELLVRIGLDSNVS 298
Query: 180 HYGCMVDLLSKAGLLEDAL----ELIRSSKFQPNAVIWGALLGGC 220
++ + SK ++ A EL R ++ NA+I G GC
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
AL AF M ++G P T ++L CA G L GR +H + G D + +AL +
Sbjct: 43 ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGV 143
MYAKC + VF ++ ++ WN+++ G A +G A A+ M RM E E P+ +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162
Query: 144 TFISVL 149
T +SVL
Sbjct: 163 TLVSVL 168
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 201/327 (61%), Gaps = 1/327 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R +SW MI +QN +A+ F M+ + PD T+ +V+ A A + R I
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWI 385
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y +++ D DVY+ +AL+DMYAKCG ++ + ++F RE+++ WN++I G HGF
Sbjct: 386 HGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFG 445
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F+ M + PN TF+SVLSAC+HAGLV+EGR F SM Y + P +EHYG
Sbjct: 446 KAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGT 505
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG L++A I+ P ++GA+LG CKLH+N+E+A + ++ L P
Sbjct: 506 MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQE 565
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
Y LL N+YA S W +V ++R AM++ G++K PG S I+++ +++ F + +H
Sbjct: 566 GVYHVLLANIYANASMWKDVARVRTAMEKNGLQK-TPGWSIIQLKNEIHTFYSGSTNHQQ 624
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAM 330
+ EIYS L+KL E++K YVP+ +++
Sbjct: 625 AKEIYSRLAKLIEEIKAVGYVPDTDSI 651
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ +SW MI Y+QN REAL FN M G+ V++ L AC LG LD G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +++IG D +V + +AL+ MY+KC +D + VF +L + WN++I G A +
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + +A+ +F RM ENV+P+ T +SV+ A A + + + R++ GYSI ++
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL--ADISDPLQARWIH---GYSIRLHLDQ 396
Query: 181 ----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G + A L S++ + + + W A++ G H
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSAR-ERHVITWNAMIHGYGSH 442
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
MP RD ++W ++ Y++N R A++ M+ G PD +T+ +VL ACA+ AL
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
RE H + ++ G + V + +A++D Y KCG + + +VF + KN WN++I+G A
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+G + EALA+F+RM+ E V+ V+ ++ L AC G ++EG R + + V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG-MRVHELLVRIGLDSNVS 298
Query: 180 HYGCMVDLLSKAGLLEDAL----ELIRSSKFQPNAVIWGALLGGC 220
++ + SK ++ A EL R ++ NA+I G GC
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84
AL AF M ++G P T ++L CA G L GR +H + G D + +AL +
Sbjct: 43 ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGV 143
MYAKC + VF ++ ++ WN+++ G A +G A A+ M RM E E P+ +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162
Query: 144 TFISVL 149
T +SVL
Sbjct: 163 TLVSVL 168
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 201/320 (62%), Gaps = 2/320 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ +SW T+I Y +N+Q + L+ FN + SG +P++ T ++VL ACA + +LD G
Sbjct: 408 IPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKG 467
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++++G D+++G+AL DMYAKCG + S VF ++ EKN W +I+GLA
Sbjct: 468 MNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAES 527
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GFA E+L +F+ M V PN + +SVL AC+H GLV++G F SM Y I P+ +
Sbjct: 528 GFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGK 587
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLLS++G L +A E IR+ FQP A W ALL GCK +++ +IA +L L
Sbjct: 588 HYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQL 647
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NNS LL N+YA RW +V+ IR M+E G+ K+ G SW+E+ +V+ F + D
Sbjct: 648 AENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGL-KKSGGCSWVEVRNQVHSFYSEDG 706
Query: 300 SHPASDEIYSSLSKLDEQLK 319
SH S+EIY +L L ++K
Sbjct: 707 SHSQSNEIYGTLQLLRSEMK 726
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 130/284 (45%), Gaps = 50/284 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW+ MI YSQ+ EAL F++M G P+ A LSA A L AL G
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAG 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH +V +IG D DV+IGS+L+D+Y KCG D LVF + EKN+ CWNS++ G +++
Sbjct: 336 INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSIN 395
Query: 121 GFA-------------------------------HEALAMFDRMIYENVEPNGVTFISVL 149
G + L +F+ ++ PN TF SVL
Sbjct: 396 GRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVL 455
Query: 150 SACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
AC +++G + + + Y I + D+ +K G + + ++
Sbjct: 456 CACASIASLDKGMNVHGKIIKLGIQYDIFVGT----ALTDMYAKCGDIGSSKQVFERMP- 510
Query: 207 QPNAVIWGALLGGCK----------LHRNLE-IAHIAVNELMIL 239
+ N + W ++ G L +E + +A NELM+L
Sbjct: 511 EKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLL 554
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 114/258 (44%), Gaps = 51/258 (19%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++SWT I+ + +N EAL F + SG+ P+ VT +V+ AC LG LG
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 62 EIHLYVMQIGFD-------------------------------IDVYIGSALVDMYAKCG 90
I V++ GF+ DV +A++D Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
L + +F ++ E+N W+++I + G+A EAL +F +M+ E +PN F
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCF----- 319
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELI 201
ACT + L +++ G +I V G ++DL K G +D L+
Sbjct: 320 ACTLSALAS-----LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDG-RLV 373
Query: 202 RSSKFQPNAVIWGALLGG 219
+ N V W +++GG
Sbjct: 374 FDLILEKNVVCWNSMVGG 391
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 18/191 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
SAL+ K G ++ S+ F + +N+ W + I G +G EAL +F R++ V
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
PN VTF SV+ AC G G +S+ G + EHY + + L L ++
Sbjct: 182 PNDVTFTSVVRACGELGDFGLG----MSI-LGLVVKAGFEHYLSVSNSLITLSLRMGEID 236
Query: 200 LIRS--SKFQPNAVI-WGALLGGCKLHRNLEIAHIAVNEL----------MILEPNNSGY 246
L R + + V+ W A+L +L A +E+ MI + SGY
Sbjct: 237 LARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGY 296
Query: 247 CTLLLNMYAEV 257
L +++++
Sbjct: 297 AEEALKLFSKM 307
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 200/321 (62%), Gaps = 1/321 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++I+WTT+I+ +Q+ EA+ F +M+ +GI P ++ +VL AC + +L GR IH
Sbjct: 1614 NLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH 1673
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ + F + V + ++LVDMYAKCGS+D + VF + K L +N++I A+HG A
Sbjct: 1674 GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAV 1733
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EALA+F + E +EP+ +TF S+LSAC+HAGLV EG F M +++ P +EHYGC+
Sbjct: 1734 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCV 1793
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V LLS+ G L++AL LI + FQP+A I G+LL C+ H +E+ L LEP+NS
Sbjct: 1794 VSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNS 1853
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G L N YA RW EV+ +R MK G+ K PG SWI+ K+ F A D SHP +
Sbjct: 1854 GNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKN-PGCSWIQTGGKLNVFVAGDGSHPKT 1912
Query: 305 DEIYSSLSKLDEQLKLASYVP 325
+EIY+ L+ L +++ YVP
Sbjct: 1913 EEIYAMLAMLLSEMRFMGYVP 1933
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R++ SW ++ + +AL F EM+ +G+ PD + VL AC L + LG+ +
Sbjct: 1240 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGV 1299
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV+++GF V++ S+LVDMY KCG L+ + VF + EKN+ WNS+I G +G
Sbjct: 1300 HGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLN 1359
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ +F M E +EP VT S LSA + + EG++ ++ S+ +
Sbjct: 1360 QEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGH-AIAILNSLDLDNILGSS 1418
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+++ SK GL+EDA EL+ S + + V W L+ H +
Sbjct: 1419 IINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLISSYVQHHQV 1460
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 115/199 (57%), Gaps = 3/199 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W +I+ Y Q+ Q +AL+ + M++ + D VT++++LSA A + LG
Sbjct: 1439 MLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLG 1498
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E H Y ++ + DV + ++++DMYAKC +D + VF E++L WN+++ A
Sbjct: 1499 KEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQV 1558
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G + EAL +F +M +++V PN +++ SV+ G V E + F M + G+ P +
Sbjct: 1559 GLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQ--PNLI 1616
Query: 180 HYGCMVDLLSKAGLLEDAL 198
+ ++ L+++G +A+
Sbjct: 1617 TWTTLISGLAQSGFGYEAI 1635
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 122/226 (53%), Gaps = 16/226 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++++W +MI Y QN +EA+D F +M+ GI P +VT+A+ LSA A+L AL G
Sbjct: 1338 MVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEG 1397
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H + D+D +GS++++ Y+K G ++ + LVF ++ EK++ WN +I H
Sbjct: 1398 KQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQH 1457
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
+AL M M EN+ + VT S+LSA ++ G+ RR +
Sbjct: 1458 HQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRR--------N 1509
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V ++D+ +K ++DA ++ S+ + + V+W LL
Sbjct: 1510 LESDVVVANSIIDMYAKCERIDDARKVFDSTT-ERDLVLWNTLLAA 1554
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 10/217 (4%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S+ I+ ++ +E++ +EM+ +L C + AL G++IH +
Sbjct: 1141 SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 1200
Query: 68 MQIG--FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++ G F + Y+ + LV YAKC + ++ +F +LR +N+F W +I+ GF+ +
Sbjct: 1201 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 1260
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITPEVEHYG 182
AL F M V P+ +VL AC L+ G+ L M G +
Sbjct: 1261 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVS----S 1316
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G+LEDA ++ S + N V W +++ G
Sbjct: 1317 SLVDMYGKCGVLEDARKVF-DSMVEKNVVTWNSMIVG 1352
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++ + MI+ Y+ + Q EAL F ++ GI PD +T ++LSAC+H G ++ G
Sbjct: 1711 MSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEG 1770
Query: 61 REIHL-YVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+ V + + + +V + ++CG+LD +L
Sbjct: 1771 LNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEAL 1807
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +++W +MIT Y +NKQF +AL F M ISP+ T+ +SA + + +L G
Sbjct: 268 MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTG 327
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+++ GF D +G+ L++MY+KCGS+ +L VF + +K L W S+I GL +H
Sbjct: 328 RWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMH 387
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + L +FD M ++P+ +TFI VL+AC+HAG E+ R F MT Y I P +EH
Sbjct: 388 GLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEH 447
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++D+L +AG LE+A + I + N VIW +LL G + H N+ + A L+ L
Sbjct: 448 YGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLA 507
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ +G +L NMYA W +V ++R MK+ G++K PG S IE + +++F DKS
Sbjct: 508 PDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKD-PGCSSIEHQGSIHEFIVGDKS 566
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++EIY L ++ ++L +A ++P+ +L
Sbjct: 567 HPQTEEIYIKLCEMKKKLNVAGHIPDTTQVL 597
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 23/292 (7%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
++SW +I CY +N++ +A+ F ++ + PD T+ VL CA LGAL G++IH
Sbjct: 80 LVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHG 138
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V++IGF +D ++ S+LV MY+KCG ++ VF ++ +K++ WNS+I+G A G
Sbjct: 139 LVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIEL 198
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185
AL MF+ M E + ++ ++ + +G +E R F M S++ + M+
Sbjct: 199 ALEMFEEM----PEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS-----WNAMI 249
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245
+ KAG A EL + + V W +++ G + ++ A + + E+M+ E +
Sbjct: 250 NGYMKAGDSNTAKELFDQMP-ERSLVTWNSMITGYERNKQFTKA-LKLFEVMLREDISPN 307
Query: 246 YCTLLLNMYAE-------VSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
Y T+L + A RW ++ K G+ G+ IEM K
Sbjct: 308 YTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGV----LGTLLIEMYSK 355
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SW ++I Y++ + AL+ F EM D + ++ + G L+
Sbjct: 175 MEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAA 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++ M I + +A+++ Y K G + + +F ++ E++L WNS+I G +
Sbjct: 231 RDV-FDRMPIRNSVS---WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERN 286
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL +F+ M+ E++ PN T + +SA + G+V G R++ Y + +
Sbjct: 287 KQFTKALKLFEVMLREDISPNYTTILGAVSAAS--GMVSLGTGRWVH---SYIVKSGFKT 341
Query: 181 YGC----MVDLLSKAGLLEDALELIRS 203
G ++++ SK G ++ AL + RS
Sbjct: 342 DGVLGTLLIEMYSKCGSVKSALRVFRS 368
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 78 IGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
+ S L+ +YA + +L + +F ++E L WN +I+ + +++A+A+F +++
Sbjct: 49 VSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLC 108
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194
+ V P+ T VL C G ++EG++ L + G+ + V +V + SK G +
Sbjct: 109 DFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFV--LSSLVSMYSKCGEI 165
Query: 195 EDALELIRSSKFQPNAVIWGALLGG 219
E ++ + + V W +L+ G
Sbjct: 166 ELCRKVFDRME-DKDVVSWNSLIDG 189
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 201/324 (62%), Gaps = 1/324 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W MI Y+QN +EAL+ F M++ GI D T+ V++A A + IH
Sbjct: 413 VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGL 472
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ D +V++ +ALVDMYAKCG++ + +F ++E+++ WN++I+G HG E
Sbjct: 473 AVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKET 532
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L +F+ M V+PN +TF+SV+SAC+H+G VEEG F SM Y + P ++HY MVD
Sbjct: 533 LDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVD 592
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246
LL +AG L+DA I+ +P + GA+LG CK+H+N+E+ A +L L+P+ GY
Sbjct: 593 LLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGY 652
Query: 247 CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDE 306
LL N+YA S W +V K+R AM++ G+ K PG SW+E+ +++ F + +HP S +
Sbjct: 653 HVLLANIYASNSMWDKVAKVRTAMEDKGLHK-TPGCSWVELRNEIHTFYSGSTNHPESKK 711
Query: 307 IYSSLSKLDEQLKLASYVPELEAM 330
IY+ L L +++K A YVP+ +++
Sbjct: 712 IYAFLETLGDEIKAAGYVPDPDSI 735
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 99/161 (61%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++SWTT++ Y+QN + AL +M+ +G PD VT+ ++L A A + AL +G
Sbjct: 206 MQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIG 265
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH Y + GF+ V + +AL+DMY KCGS + LVF +R K + WN++I+G A +
Sbjct: 266 RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQN 325
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
G + EA A F +M+ E P VT + VL AC + G +E G
Sbjct: 326 GESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 3/223 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ++SW TMI +QN + EA F +M + G P +VTM VL ACA+LG L+ G
Sbjct: 307 MRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + ++ D +V + ++L+ MY+KC +D + +F L + N+ WN++I G A +
Sbjct: 367 WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQN 425
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M + ++ + T + V++A V + + + V
Sbjct: 426 GCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS-VNRQAKWIHGLAVRACMDNNVFV 484
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G ++ A +L + + + + W A++ G H
Sbjct: 485 STALVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAMIDGYGTH 526
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 10/218 (4%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + M+ Y++N +AL F M + A +L C L GREIH
Sbjct: 111 VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGL 170
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ GF+ ++++ +A++ +YAKC +D + +F +++ K+L W +++ G A +G A A
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY----G 182
L + +M +P+ VT +S+L A + GR GY+ E
Sbjct: 231 LQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRS-----IHGYAFRSGFESLVNVTN 285
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
++D+ K G A L+ V W ++ GC
Sbjct: 286 ALLDMYFKCGSARIA-RLVFKGMRSKTVVSWNTMIDGC 322
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +I+W MI Y + +E LD FNEM+ + P+ +T +V+SAC+H G ++ G
Sbjct: 508 MQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEG 567
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLD 93
+ MQ + ++ + SA+VD+ + G LD
Sbjct: 568 LLL-FKSMQEDYYLEPTMDHYSAMVDLLGRAGQLD 601
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 201/324 (62%), Gaps = 1/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D SW+TM++ YSQN Q E L EM+ +S D T+A+V+ C LG LDLG
Sbjct: 128 MPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG 187
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y+ + G IDV +G+ALV MY+KCGSLD +L VF + E+++ W+ +I G A+H
Sbjct: 188 KWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIH 247
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +FD M + PN VTF SVLSA +H+GLVE+G + F +M Y ITP+++H
Sbjct: 248 GHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKH 307
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG++ A + I++ +PN V+W LLG CK H + +++ L+
Sbjct: 308 YGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLD 367
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ + N+YA + RW+ V ++R MKE +K+ G S IE+ V++F ++S
Sbjct: 368 PSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQ-HGWSSIEINFMVHKFIMGEES 426
Query: 301 HPASDEIYSSLSKLDEQLKLASYV 324
HP ++IY L ++ +LK +V
Sbjct: 427 HPKREKIYGMLHQMARKLKQVGHV 450
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 2/225 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ W T+I YS + A+ + +M GISP+ T VL+AC L L G+E+H
Sbjct: 31 NLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQELH 90
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ G D + + + L+ +YA CG +D + ++F ++ E + W++++ G + +G A
Sbjct: 91 SQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAV 150
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E L + M ENV + T SV+ C G+++ G + S + +V +
Sbjct: 151 ETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSYIDKEGVKIDVVLGTAL 209
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
V + SK G L++AL++ + + + W ++ G +H + E A
Sbjct: 210 VGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHGHDEKA 253
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G + + +F NLF WN+II G ++ A+A++ M + PN TF VL
Sbjct: 15 GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
+AC + EG + S + E ++ L + G ++ A + +P+
Sbjct: 75 NACCKLLRLCEG-QELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMP-EPD 132
Query: 210 AVIWGALLGG 219
+ W ++ G
Sbjct: 133 SASWSTMVSG 142
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 210/333 (63%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD++S T +I+ Y+Q EAL+ F ++ G+ + VT +VL+A + L ALD G
Sbjct: 220 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H ++++ V + ++L+DMY+KCG+L + +F L E+ + WN+++ G + H
Sbjct: 280 KQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKH 339
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPEV 178
G E L +F+ MI EN V+P+ VT ++VLS C+H GL ++G F MT G S+ P+
Sbjct: 340 GEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDS 399
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HYGC+VD+L +AG +E A E ++ F+P+A IWG LLG C +H NL+I ++L+
Sbjct: 400 KHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQ 459
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N+G +L N+YA RW +V +R M + + K PG SWIE+++ ++ F ASD
Sbjct: 460 IEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKE-PGRSWIELDQVLHTFHASD 518
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +E+ + + +L + K A YVP+L +L
Sbjct: 519 CSHPRREEVSAKVQELSARFKEAGYVPDLSCVL 551
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT MI+ YSQ +AL F +M SG P++ T ATVL++C LG
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLG 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH +++++ ++ VY+GS+L+DMYAK G + + +F L E+++ +II G A
Sbjct: 179 RQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQL 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F R+ E ++ N VT+ SVL+A + ++ G++ + + EV
Sbjct: 239 GLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQ-----VHNHLLRSEVPS 293
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
Y ++D+ SK G L A + + + + W A+L G H
Sbjct: 294 YVVLQNSLIDMYSKCGNLTYARRIF-DTLHERTVISWNAMLVGYSKH 339
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 3/141 (2%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
++ + + + REAL M G+ + TVL+ C A+ G+ +H ++++
Sbjct: 32 VLNIHIHDTRLREAL---LHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTH 88
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
+ VY+ + L+ Y KC SL + VF + E+N+ W ++I + G+A +AL++F
Sbjct: 89 YLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFV 148
Query: 132 RMIYENVEPNGVTFISVLSAC 152
+M+ EPN TF +VL++C
Sbjct: 149 QMLRSGTEPNEFTFATVLTSC 169
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/286 (45%), Positives = 191/286 (66%), Gaps = 4/286 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLG 60
+D++ + MI CY+QN + EAL+ FN M N + PD++T+A+V+SAC+ LG L G
Sbjct: 295 GKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFG 354
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ ++G ++D ++ +AL+D+YAKCGS+D++ +F LR+K+L + ++I G ++
Sbjct: 355 PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGIN 414
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +FD M+ + PN +TFI +L+A HAGLVEEG R F SM Y++ P V+H
Sbjct: 415 GKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDH 473
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDL +AG L++ALELI+S QP+A +WGALL C+LH N+E IA LE
Sbjct: 474 YGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE 533
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
P+ +GY +LL N+YA RW +V ++R KE G K PG SW+E
Sbjct: 534 PDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSK-IPGCSWME 578
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 17/220 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D SW I +Q+ QF+EA + +M+ G+ P +++ L ACA + G IH
Sbjct: 69 DSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIH 128
Query: 65 LYVMQIGFDID---VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
V + GF +Y+ +ALVD Y K G ++ + +F ++ E+N+ WNS++ G G
Sbjct: 129 GQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSG 188
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VE 179
A +FD + ++V +++ S++S AG +E+ F M PE
Sbjct: 189 DLVVAQRVFDEIPQKDV----ISWNSMISGYARAGDMEKASSLFQQM-------PERNFA 237
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ M+ + G ++ A + Q N V W ++ G
Sbjct: 238 SWNAMISGHVEFGDIDSARSFFDAMP-QKNNVSWMTMISG 276
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW +MI+ Y++ +A F +M + + ++S G +D
Sbjct: 200 IPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFA----SWNAMISGHVEFGDIDSA 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + Q + ++ Y+KCG +D + +F ++ K+L +N++I A +
Sbjct: 256 RSFFDAMPQ----KNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQN 311
Query: 121 GFAHEALAMFDRMI--YENVEPNGVTFISVLSACTHAG------LVEEGRRRFLSMTCGY 172
+EAL +F+ M+ Y NV+P+ +T SV+SAC+ G +E RR G+
Sbjct: 312 SRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGH 371
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
T ++DL +K G ++ A EL + + + V + A++ GC ++
Sbjct: 372 LAT-------ALLDLYAKCGSIDKAYELFHGLR-KKDLVAYTAMILGCGIN 414
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 205/319 (64%), Gaps = 3/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDI+SW +++T Y+ F + +M + PD VTM +++SA GALD G
Sbjct: 258 MPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQG 317
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H +V+++ +D ++GSAL+DMY KCGS++R+ VF ++ +K++ W ++I GLA H
Sbjct: 318 RWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFH 377
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +AL +F M E+V P+ VTF+SVLSAC+H+GLV++G + F SMT Y I P VEH
Sbjct: 378 GYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMT-DYGIEPGVEH 435
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL+++G L +A ++I +P+ IWGA+L C+ ++E+A IA EL+ L+
Sbjct: 436 YGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLD 495
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P G TLL N+YA RW+ KIR M+ G+ K+ G S + ++ V+ F ++DK
Sbjct: 496 PEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGV-KKTAGCSSVVVDGVVHNFISADKC 554
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP +I S L+ L ++K
Sbjct: 555 HPGWVDISSILNCLKNEMK 573
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 43/260 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+ DI+S+ MI Y++ EA+ F+EM G+ PD+ T+ +L +C LG + G
Sbjct: 124 MPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFG 183
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ +H ++ + I ++ +G+AL+DMY KC ++ +L F L+EK++ WN I+ G A
Sbjct: 184 KAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCA 243
Query: 119 VHGFAHEALAMFDR-------------------------------MIYENVEPNGVTFIS 147
G +A F + M+ E V P+ VT IS
Sbjct: 244 KVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMIS 303
Query: 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----CMVDLLSKAGLLEDALELIRS 203
++SA T +G +++GR G+ I +++ ++D+ K G +E A + +
Sbjct: 304 LVSAATESGALDQGR-----WAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKE 358
Query: 204 SKFQPNAVIWGALLGGCKLH 223
+ + +W ++ G H
Sbjct: 359 IN-KKDVTVWTTMITGLAFH 377
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 18/237 (7%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++ + T+I+ +S K+ E+ +N + +SG PD+ T+ +L A + + +
Sbjct: 28 PNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQV---K 83
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+IH + G Y+ + L+ +Y + G + + VF K+ ++ +N +I G A G
Sbjct: 84 QIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKG 143
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYSI 174
F EA+ +F M+ +EP+ T + +L +C G V+ G+ RR +I
Sbjct: 144 FGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERR------KPTI 197
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231
+ + ++D+ K +E AL + K + + V W ++ GC LE A +
Sbjct: 198 SSNLILGNALLDMYVKCQKVELALRTFGALK-EKDIVSWNMIVAGCAKVGELEQARL 253
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 201/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++WT MI+ +QN +AL FN+MK G P+ A ++AC+ LGAL+ G
Sbjct: 385 MPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENG 444
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ +G D + +G+A++ MYA+CG ++ + +F + + WNS+I L H
Sbjct: 445 RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQH 504
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ ++++M+ E + P+ TF++VLSAC+HAGLVEEG R F SM Y I P +H
Sbjct: 505 GHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDH 564
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y M+DL +AG DA +I S F+ A IW ALL GC+ H N+++ A +L L
Sbjct: 565 YARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLI 624
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL NMYA + RW +V + R M++ G++K P SW E+E KV+ F D
Sbjct: 625 PQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKE-PACSWTEVENKVHVFLVDDTV 683
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP IY+ L KL+ ++K Y+P+ + +L
Sbjct: 684 HPEVLSIYNYLEKLNLEMKKIGYIPDTKYVL 714
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 43/283 (15%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
I+W MI+ Y + F +AL F +M+ G+ D+ T +V+SACA G LG+++H Y
Sbjct: 255 IAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314
Query: 67 VMQIGFDID----VYIGSALVDMYAKCGSLDRSLLVFF---------------------- 100
+++ + D + +G+ L+ +Y K G +D + +F+
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374
Query: 101 ---------KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
++ EKNL W +I GLA +GF +AL +F++M + EPN F ++A
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434
Query: 152 CTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
C+ G +E GR+ + G+ T V + M+ + ++ G++E A + + F +
Sbjct: 435 CSVLGALENGRQLHAQIVHLGHDSTLSVGN--AMITMYARCGIVEAARTMFLTMPF-VDP 491
Query: 211 VIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLL 250
V W +++ H + + I + E M+ E P+ + T+L
Sbjct: 492 VSWNSMIAALGQHGH-GVKAIELYEQMLKEGILPDRRTFLTVL 533
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 43/202 (21%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR-- 61
RD + + MIT YS A++ F M+ + PD T A+VLSA L D +
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSAST-LIFYDERQCG 168
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKC-------------------------------- 89
++H V++ G +I + +AL+ +Y KC
Sbjct: 169 QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228
Query: 90 --------GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
G L + + + E+ WN++I G HG +AL +F +M V+ +
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVD 288
Query: 142 GVTFISVLSACTHAGLVEEGRR 163
T+ SV+SAC G G++
Sbjct: 289 ESTYTSVISACADGGFFLLGKQ 310
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 198/329 (60%), Gaps = 13/329 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+DI SW ++I+ + Q L F++M SGI PD VT+ TVL AC+HL AL GREI
Sbjct: 275 KDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREI 334
Query: 64 HLYVMQIGFDID--------VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
H Y++ G D + + +A++DMYAKCGS++ +L +F + +K++ WN +I
Sbjct: 335 HGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIM 394
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G +HG+A EAL MF +M +PN VT + VLSAC HAG V GR M + +
Sbjct: 395 GYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVI 454
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
P +EHY C++D+L +AG LEDA E+++ Q N V+W ALLG C+LH N E+A IA +
Sbjct: 455 PTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQ 514
Query: 236 LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295
++ LEP + G L+ N+Y + R+ EV ++R MKE + K+ PG SWIE++ V+ F
Sbjct: 515 VLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNV-KKTPGCSWIELKDGVHVFR 573
Query: 296 ASDKSHPASDEIYSSLSK----LDEQLKL 320
D++H + + + L LDE L L
Sbjct: 574 TGDRTHSELNALTNQLCDIGFILDEVLNL 602
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++ W MI Y++ EAL+ F M G++P + T+ +LS A G LD G+ +
Sbjct: 174 RDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTV 233
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H VM++G+D V + +AL+DMY KC + +L++F + EK++F WNSII G
Sbjct: 234 HGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDH 293
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH--- 180
L +FD+M+ + P+ VT +VL AC+H + GR GY I +
Sbjct: 294 DGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIH-----GYMIINGLGKDDE 348
Query: 181 ---------YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G + +AL++ S + + W ++ G +H
Sbjct: 349 NGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMS-KKDVASWNIMIMGYGMH 399
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 112/214 (52%), Gaps = 10/214 (4%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R++ ++ +I+ + N + + +M+ G+ PD+ T V+ C + + ++I
Sbjct: 76 RNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKI 132
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++++G ++DV++GSALV+ Y K GS++ + VF +L +++ WN++I G A G
Sbjct: 133 HGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCL 192
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYG 182
EAL +F RM + V P+ T +LS G ++ G+ + M GY V +
Sbjct: 193 DEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSN-- 250
Query: 183 CMVDLLSKAGLLEDAL---ELIRSSK-FQPNAVI 212
++D+ K + DAL E+I F N++I
Sbjct: 251 ALIDMYGKCKHIGDALIIFEMINEKDIFSWNSII 284
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 6/173 (3%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKN 106
L +CA L+ G+++H ++ GF ++L++MY+KCG + ++LVF+ E+N
Sbjct: 18 LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166
+F +N+II G +G A + + +M E V P+ TF V+ C V++ L
Sbjct: 78 VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLL 137
Query: 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M + +V +V+ K G +EDA ++ + + V+W A++ G
Sbjct: 138 KM----GLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAMING 185
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+ SW MI Y + EAL F++M + P++VT+ VLSAC H G + G
Sbjct: 381 MSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHG 440
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
R + L M+ F + I + ++DM + G L+ + + K+ + N W +++
Sbjct: 441 R-LFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGAC 499
Query: 118 AVHGFAHEA 126
+HG A A
Sbjct: 500 RLHGNAELA 508
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 205/307 (66%), Gaps = 1/307 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + I+SWT MI+ Y+ + EA+D F EM+ +GI PD++++ +VL +CA LG+L+LG
Sbjct: 201 MLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG 260
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IHLY + GF + +AL++MY+KCG + +++ +F ++ K++ W+++I G A H
Sbjct: 261 KWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYH 320
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH A+ F+ M V+PNG+TF+ +LSAC+H G+ +EG R F M Y I P++EH
Sbjct: 321 GNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEH 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++D+L++AG LE A+E+ ++ +P++ IWG+LL C+ NL++A +A++ L+ LE
Sbjct: 381 YGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELE 440
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL N+YA++ +W +V+++R ++ + K+ PG S IE+ V +F + D S
Sbjct: 441 PEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENM-KKTPGGSLIEVNNIVQEFVSGDNS 499
Query: 301 HPASDEI 307
P EI
Sbjct: 500 KPFWTEI 506
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 152/364 (41%), Gaps = 73/364 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ + ++I Y+ N + + + + ++ + S PD+ T + +CA LG+ LG+++
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H ++ + G V +AL+DMY K L + VF ++ E+++ WNS++ G A
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQM 191
Query: 119 --VHGFAH------------------------EALAMFDRMIYENVEPNGVTFISVLSAC 152
G H EA+ F M +EP+ ++ ISVL +C
Sbjct: 192 KKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 153 THAGLVEEG--------RRRFLSMT--CGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
G +E G RR FL T C ++++ SK G++ A++L
Sbjct: 252 AQLGSLELGKWIHLYAERRGFLKQTGVC-----------NALIEMYSKCGVISQAIQLFG 300
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTL-LLNMYAEVSRWA 261
+ + + + W ++ G H N A NE+ + +G L LL+ + V W
Sbjct: 301 QMEGK-DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQ 359
Query: 262 EVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321
E G + +M R+ YQ + + ++ + KL+ +++
Sbjct: 360 E------------------GLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEIT 401
Query: 322 SYVP 325
+P
Sbjct: 402 KTMP 405
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++I+ ++ G ++ + +VD K +D + +F ++ N+F +NSII +
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 121 GFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ + ++ +++ ++ E P+ TF + +C G G++ + C + V
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL-CKFGPRFHVV 145
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K L DA ++ ++ + + W +LL G
Sbjct: 146 TENALIDMYMKFDDLVDAHKVF-DEMYERDVISWNSLLSG 184
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 203/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +SW +I+ +++ + AL +M+ P T ++VLSACA +GAL+ G
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG 309
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++++ G + +IG+ L+DMYAK GS+D + VF +L + ++ WN+++ G A H
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F++M+ +EPN ++F+ VL+AC+H+GL++EG F M Y + P+V H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPH 428
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y VDLL + GLL+ A IR +P A +WGALLG C++H+N+E+ A L+
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL N+YA RW +V K+R MKE G++K+ P SW+E+E V+ F A+D++
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQ-PACSWVEIENAVHLFVANDET 547
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI ++ ++K YVP+ +L
Sbjct: 548 HPRIKEIRGKWEEISGKIKEIGYVPDTSHVL 578
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++WT +I +SQN + R+AL F +M G P+ T++++L A LD G
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPG 208
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ G+ VY+GSALVDMYA+CG +D + L F + K+ WN++I G A
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARK 268
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G AL + +M +N +P T+ SVLSAC G +E+G+ M G + +
Sbjct: 269 GEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIG 328
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +KAG ++DA + +P+ V W +L GC H
Sbjct: 329 N--TLLDMYAKAGSIDDAKRVF-DRLVKPDVVSWNTMLTGCAQH 369
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 5/197 (2%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF-DIDVYIGSALV 83
L A + ++ + PD + +L C LG ++ GR +H +++ F D + + + +V
Sbjct: 71 GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+MYAKCG LD + +F ++ K++ W ++I G + + +AL +F +M+ +PN
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHF 190
Query: 144 TFISVLSAC-THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
T S+L A + GL + + GY + V +VD+ ++ G + DA +L
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVG--SALVDMYARCGHM-DAAQLAF 247
Query: 203 SSKFQPNAVIWGALLGG 219
+ V W AL+ G
Sbjct: 248 DGMPTKSEVSWNALISG 264
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 211/366 (57%), Gaps = 36/366 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM---------------------------- 32
MP RD++SW ++T Y N+++ + L F++M
Sbjct: 294 MPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKA 353
Query: 33 -------KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
+N G P+Q+T+++ L AC+ L +L +G+E+H YV + D+ +ALV M
Sbjct: 354 VEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYM 413
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YAKCG L+ S VF + K++ WN++I A+HG E L +F+ M+ ++PN VTF
Sbjct: 414 YAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTF 473
Query: 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
VLS C+H+ LVEEG + F SM + + P+ HY CMVD+ S+AG L +A E I+
Sbjct: 474 TGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMP 533
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265
+P A WGALLG C++++N+E+A I+ N+L +EPNN G L N+ W+E ++
Sbjct: 534 MEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASE 593
Query: 266 IRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325
R+ MKE GI K PG SW+++ +V+ F DK++ SD+IY+ L +L E++K A Y P
Sbjct: 594 ARILMKERGITKT-PGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKP 652
Query: 326 ELEAML 331
+ + +L
Sbjct: 653 DTDYVL 658
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 91/158 (57%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT+M +CY R L F EM +G+ P+ VT++++L AC+ L L GR I
Sbjct: 196 KDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAI 255
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + ++ G +V++ SALV +YA+C S+ ++ LVF + +++ WN ++ +
Sbjct: 256 HGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREY 315
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
+ LA+F +M + VE + T+ +V+ C G E+
Sbjct: 316 DKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKA 353
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 78/162 (48%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + +T+I+ ++ EA+ + ++ GI P TV AC G
Sbjct: 92 IPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRV 151
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H ++ G D ++G+AL+ Y KC ++ + VF L K++ W S+
Sbjct: 152 KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNC 211
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
G LA+F M + V+PN VT S+L AC+ ++ GR
Sbjct: 212 GLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGR 253
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 191/301 (63%), Gaps = 2/301 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++I+W TMI+ Y + + EA+D F+EMK D +T+ VLSACAHLG L G
Sbjct: 208 MPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKG 267
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H+Y ++ ++L+DMYAKCG++ RSL VF+K + K+++CWN+II GLA+H
Sbjct: 268 TEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALH 327
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ H A+ + D+M V P+ +TFI +LSAC+H LV+EG R F M + + P++EH
Sbjct: 328 GYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEH 387
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL +AG L+ A +LI++ F+P I GALLG C +H++LE +N +
Sbjct: 388 YGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVINLITSKA 447
Query: 241 PNNS-GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ S G + +N+YA +W E + R M E GI K GS+ IE++ K Y+F A D
Sbjct: 448 HHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGST-IEVDGKFYRFLAGDI 506
Query: 300 S 300
S
Sbjct: 507 S 507
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 42/282 (14%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I +A+ A+ EMK G D T +L A + L + +G +H M
Sbjct: 22 WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF ++G+AL+DMY+ G++D + VF ++ K++ WNS++ A G A+
Sbjct: 82 KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141
Query: 129 MFDRM--------------------------IYENVEPNG-VTFISVLSACTHAGLVEEG 161
+FD M I++ + V++ S++ ACT+ G +
Sbjct: 142 LFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 201
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLG 218
R F M IT + M+ A L +A++L +++ + + + +L
Sbjct: 202 RNLFDVMPKKNVIT-----WNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLS 256
Query: 219 GCK----LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
C L + E+ A + + P+ T L++MYA+
Sbjct: 257 ACAHLGWLGKGTEMHVYAQDHRLASSPH---VATSLIDMYAK 295
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W +M+ Y+ Q A+ F+ M D + ++S A +G
Sbjct: 115 MGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMP----LKDLASFNIMISGYAKIGKKAAA 170
Query: 61 REIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
R I FD D+ ++++ G + + +F + +KN+ WN++I G
Sbjct: 171 RSI--------FDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISG 222
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSIT 175
EA+ +FD M N E + +T VLSAC H G + +G + + + +
Sbjct: 223 YLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASS 282
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
P V ++D+ +K G ++ +LE+ S+ + + W A++ G LH H AV
Sbjct: 283 PHVA--TSLIDMYAKCGTIQRSLEVFYKSQVK-DIYCWNAIISGLALH---GYGHAAVKL 336
Query: 236 LMILEPN 242
L + N
Sbjct: 337 LDKMRDN 343
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 203/321 (63%), Gaps = 1/321 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW ++T Y+QN + EAL+ F++M +G+ PD +T +V ACA L +L+ G +
Sbjct: 245 RDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKA 304
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ GFD D+ + +AL+ +++KCG + S LVF ++ +L WN+II A HG
Sbjct: 305 HALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLY 364
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A + FD+M+ +V+P+G+TF+S+LSAC AG V E F M Y I P EHY C
Sbjct: 365 DKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYAC 424
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VD++S+AG L+ A ++I F+ ++ IWGA+L C +H N+E+ +A ++ L+P N
Sbjct: 425 LVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFN 484
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG +L N+YA +W +V +IRV MKE G++K+ SW+++ K + F D SHP
Sbjct: 485 SGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQT-AYSWLQIGNKTHYFVGGDPSHPN 543
Query: 304 SDEIYSSLSKLDEQLKLASYV 324
++I+ +L ++ +K+ +V
Sbjct: 544 INDIHVALRRITLHMKVKDFV 564
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SW MI +N EA + F M D+
Sbjct: 180 MPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKN---------------------DVA 218
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +A++ + K G ++ + +F ++R ++L WN I+ G A +
Sbjct: 219 R------------------TAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQN 260
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +MI ++P+ +TF+SV AC +EEG + ++ + ++
Sbjct: 261 GRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAH-ALLIKHGFDSDLSV 319
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238
++ + SK G + D+ EL+ P+ V W ++ H + A ++++
Sbjct: 320 CNALITVHSKCGGIVDS-ELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVS 378
Query: 239 LEPNNSGYCTLL 250
++P+ + +LL
Sbjct: 379 VQPDGITFLSLL 390
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 19/220 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W +M++ Y QN + + F+ M + V+ ++++AC L
Sbjct: 55 MATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNV----VSWNSIIAACVQNDNL--- 107
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-V 119
+ + + + +A++ A+CG + + +F + N+ + ++++G A V
Sbjct: 108 -QDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARV 166
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A A+F+ M N V+++ +++ GL EE F+ M +
Sbjct: 167 EGGIGRARALFEAMPRR----NSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTA- 221
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
M+ K G +EDA +L + + + + V W ++ G
Sbjct: 222 ----MITGFCKEGRMEDARDLFQEIRCR-DLVSWNIIMTG 256
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DVY + + ++ G +D + +F ++ K++ WNS++ +G + A+F M
Sbjct: 28 DVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMP 87
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAG 192
NV V++ S+++AC +++ R + PE Y ++ L++ G
Sbjct: 88 LRNV----VSWNSIIAACVQNDNLQDAFRYL-------AAAPEKNAASYNAIISGLARCG 136
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGG 219
++DA L + PN V + A++ G
Sbjct: 137 RMKDAQRLFEAMPC-PNVVSYTAMVDG 162
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 202/315 (64%), Gaps = 1/315 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
PA+++++WT +I Y++ +EA ++M SG+ D ++L+ACA G L LG
Sbjct: 276 PAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGM 335
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H + + + + + +AL+DMYAKCGSL ++ VF + +K+L WN+++ GL VHG
Sbjct: 336 RAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHG 395
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EA+ +F RM E + P+ VTFI+VL +C HAGL++EG F SM Y + P+VEHY
Sbjct: 396 HGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHY 455
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GC+VDLL + G L++A++++++ +PN VIWGALLG C++H ++IA ++ L+ L+P
Sbjct: 456 GCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDP 515
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
++ G TLL N+YA W V IR MK +G+EK G+S +E+E +++F DKSH
Sbjct: 516 SDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPS-GASSVELEDGIHEFTVFDKSH 574
Query: 302 PASDEIYSSLSKLDE 316
P SD+IY L L E
Sbjct: 575 PKSDQIYQMLGSLIE 589
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 12/213 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
++I ++ N Q +A F+EM+ G+ D T +L AC+ L L + + +H ++ +
Sbjct: 86 NSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEK 145
Query: 70 IGFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+G D+Y+ +AL+D Y++CG L ++ +F K+ E++ WNS++ GL G +A
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+FD M ++ +++ ++L + F M +++ + MV
Sbjct: 206 KLFDEMPQRDL----ISWNTMLDGYARCREMSRAFELFEKMPERNTVS-----WSTMVMG 256
Query: 188 LSKAGLLEDALELIRSSKFQ-PNAVIWGALLGG 219
SKAG +E A + F N V W ++ G
Sbjct: 257 YSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAG 289
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW TM+ + +EA++ F+ M+ GI PD+VT VL +C H G +D G
Sbjct: 376 MPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEG 435
Query: 61 REIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+ + Y M+ +D+ V LVD+ + G L ++ V + E N+ W +++
Sbjct: 436 ID-YFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGAC 494
Query: 118 AVHGFAHEALAMFDRMI-YENVEPNGVTFISVLSAC 152
+H A + D ++ + +P T +S + A
Sbjct: 495 RMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAA 530
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +M+ + + R+A F+EM D ++ T+L A ++
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQR----DLISWNTMLDGYAR--CREMS 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL--REKNLFCWNSIIEGLA 118
R L+ + + + S +V Y+K G ++ + ++F K+ KN+ W II G A
Sbjct: 234 RAFELF--EKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYA 291
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G EA + D+M+ + + IS+L+AC +GL+ G R S+ ++
Sbjct: 292 EKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAH-SIIKKSNLNSNA 350
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L+ A ++ + + V W +L G +H
Sbjct: 351 SVLNALLDMYAKCGSLKKAFDVFNDMP-KKDLVSWNTMLHGLGVH 394
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL 107
L CA+L + +++H +++ D++I L+ + C + +L VF +++E N+
Sbjct: 26 LPKCANLNQV---KQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
NS+I A++ ++A +F M + + T+ +L AC+ + +
Sbjct: 83 HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLP-----VVK 137
Query: 168 MTCGY----SITPEVEHYGCMVDLLSKAGLL--EDALELIRSSKFQPNAVIWGALLGG 219
M + ++ ++ ++D S+ G L DA++L + + V W ++LGG
Sbjct: 138 MMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGG 194
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 199/301 (66%), Gaps = 3/301 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP R++ISWT +I+ Y+QN ++ +AL+ F ++N G P++V++A+VL AC+ LGALD+
Sbjct: 174 MPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDI 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
G+ I Y GF + Y+ +A+++++A+CG+++ + VF ++ K NL WN++I GLA
Sbjct: 234 GKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLA 293
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG +AL ++D+M+ + P+ VTF+ +L ACTH G+V EGR+ F SM + + P++
Sbjct: 294 VHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKL 353
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+VDLL +AG L++A LI++ P++VIWG LLG C H N+E+ +A L
Sbjct: 354 EHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFK 413
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G +L N+YA W+ V ++R MK I KR G S+IE+ +++F D
Sbjct: 414 LEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRA-GYSYIEVGDGIHEFIVED 472
Query: 299 K 299
+
Sbjct: 473 R 473
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 44/313 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + + I +S + +M + G SP+Q + + ACA L + G
Sbjct: 42 IPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG 101
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + GF D++ +AL+DMYAK G L + +F ++ +++ WNS+I G A
Sbjct: 102 QMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARS 161
Query: 121 GFAHEALAMFDRMIYENV--------------------------------EPNGVTFISV 148
G AL +F++M NV +PN V+ SV
Sbjct: 162 GHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASV 221
Query: 149 LSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L AC+ G ++ G+R + G+ V + +++L ++ G +E+A ++ +
Sbjct: 222 LPACSQLGALDIGKRIEAYARNNGFFKNAYVSN--AVLELHARCGNIEEAQQVFDEIGSK 279
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLL-----NMYAEVSRW 260
N W ++ G +H A ++++I + P++ + LLL M AE +
Sbjct: 280 RNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQL 339
Query: 261 AEV--TKIRVAMK 271
E +K +VA K
Sbjct: 340 FESMESKFQVAPK 352
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 94/212 (44%), Gaps = 9/212 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y ++ G D + L++ + L + +F ++ + +++ +N I+ +
Sbjct: 5 KQIHAYSLRNGLDHTKF----LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H ++ +M + PN +F + AC V G + S C ++
Sbjct: 61 GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QMLHSHFCKSGFASDMFA 119
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ +K G+L A +L + + W +L+ G ++E A N++ +
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGHMEAALELFNKMPV-- 176
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
N T L++ YA+ ++A+ ++ + ++
Sbjct: 177 -RNVISWTALISGYAQNGKYAKALEMFIGLEN 207
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 206/330 (62%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAH-LGALDLGR 61
++++SWT +I+ Y QN + A++ F +M+ G+ P++ T ++VL+ACA +++ G+
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGK 418
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ H ++ GF + + SALV MYAK G+++ + VF + +++L WNS+I G A HG
Sbjct: 419 QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG 478
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
++L +F+ M +N+E +G+TFI V+SACTHAGLV EG+R F M Y I P +EHY
Sbjct: 479 CGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHY 538
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVDL S+AG+LE A++LI F A IW LL C++H N+++ +A +L+ L+P
Sbjct: 539 SCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQP 598
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+S LL N+YA W E K+R M ++K G SWIE++ K + F A D SH
Sbjct: 599 QDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKE-AGYSWIEVKNKTFSFMAGDLSH 657
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P SD IY L +L +LK A Y P+ + +L
Sbjct: 658 PQSDRIYLKLEELSIRLKDAGYYPDTKYVL 687
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 2/204 (0%)
Query: 16 YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
+S+N Q +EAL+ F ++ SG D +++ VL C L +G+++H ++ GF D
Sbjct: 67 FSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVED 126
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
V +G++LVDMY K S++ VF ++R KN+ W S++ G +G +AL +F +M
Sbjct: 127 VSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQL 186
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
E ++PN TF +VL G VE+G + +M + + MV++ SK+ ++
Sbjct: 187 EGIKPNPFTFAAVLGGLAADGAVEKG-VQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245
Query: 196 DALELIRSSKFQPNAVIWGALLGG 219
DA + S + NAV W +++ G
Sbjct: 246 DAKAVFDSME-NRNAVSWNSMIAG 268
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT+++ Y QN +AL F++M+ GI P+ T A VL A GA++ G
Sbjct: 153 MRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG 212
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V++ G D +++G+++V+MY+K + + VF + +N WNS+I G +
Sbjct: 213 VQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTN 272
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F RM E V+ F +V+ C + ++E M+ + +V
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN---IKE-------MSFAKQLHCQVIK 322
Query: 181 YGCMVDL---------LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G DL SK ++DA +L N V W A++ G
Sbjct: 323 NGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 199/318 (62%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ++W++++ + QN+ + E L F K G+ +Q +++V+ ACA L AL G
Sbjct: 160 MPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEG 219
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H V + GF + ++ SALVDMYAKCGS++ + ++F + +KN+ WN+II G A H
Sbjct: 220 RQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKH 279
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ E + +F+ M ++P+ VT+++VLSAC H GLV++GR F MT ++++P V H
Sbjct: 280 ACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLH 339
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L + GL+ +A EL+ F A +WG+LL C++H NLE+A IA L +E
Sbjct: 340 YSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEME 399
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ G LL N YA +W E K R ++K I K G SWIE++ KV+ F A +++
Sbjct: 400 PDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKE-RGKSWIEIKDKVHTFMAGERT 458
Query: 301 HPASDEIYSSLSKLDEQL 318
HP +IY L+ L E++
Sbjct: 459 HPRITDIYLELNNLLEEM 476
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R ++SW MI QN + +A+D F EM+ G + T+++V+ ACA G +
Sbjct: 59 IPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFC 118
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H + ++ D DV++G+AL+D+YAKCGS++ + VF + E+N W+SI+ G +
Sbjct: 119 RQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQN 178
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E L +F R +E N SV+ AC + EG R+ ++ C P
Sbjct: 179 ELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEG-RQVHAIVCRTGFGPNNFV 237
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G +E+A L + + + N V+W A++ G H
Sbjct: 238 ASALVDMYAKCGSIEEAYVLFCNIE-KKNVVLWNAIISGFAKH 279
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105
++L CA G+ H V+++G + D + L++MY+KCG + R+ VF ++ E+
Sbjct: 3 SLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPER 62
Query: 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
++ WN +I +G +A+ +F M E + T SV+ AC G V R+
Sbjct: 63 SMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFC-RQL 121
Query: 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + +V ++D+ +K G +EDA + + N V W +++ G
Sbjct: 122 HAFAIKAVVDADVFVGTALIDVYAKCGSIEDA-SCVFEGMPERNDVTWSSIVAG 174
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++S+ T++ Y+++ EA + FNE++ +G + T A++LS + +GA+ G +I
Sbjct: 314 KNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQI 373
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ GF +++I +AL+ MY++CG+++ + VF ++ + N+ W S+I G A HGFA
Sbjct: 374 HSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFA 433
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL F +M+ V PN VT+I+VLSAC+H GL+ EG + F SM + I P +EHY C
Sbjct: 434 TRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYAC 493
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL ++G LE+A+EL+ S F+ +A++ LG C++H N+++ A ++ +P++
Sbjct: 494 VVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHD 553
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N++A +W EV +IR MKE + K G SWIE+E KV++F D SHP
Sbjct: 554 PAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKE-AGCSWIEVENKVHKFYVGDTSHPQ 612
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ EIY L +L ++K Y+P + +L
Sbjct: 613 AQEIYDELDQLALKIKELGYIPSTDFVL 640
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 24/249 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT MIT + Q R+A+D F +M SG PD+ T++ V+SACA +G L LG
Sbjct: 105 MPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC---GSLDRSLLVFFKLREKNLFCWNSIIEG- 116
R+ H VM+ G D+DV +G +LVDMYAKC GS+D + VF ++ N+ W +II G
Sbjct: 165 RQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGY 224
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--------RFLSM 168
+ G EA+ +F M+ V+PN TF SVL AC + + G + R S+
Sbjct: 225 VQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASI 284
Query: 169 TC-GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
C G S ++ + S+ G +E+A + F+ N V + ++ N E
Sbjct: 285 NCVGNS----------LISMYSRCGNMENARKAF-DVLFEKNLVSYNTIVNAYAKSLNSE 333
Query: 228 IAHIAVNEL 236
A NE+
Sbjct: 334 EAFELFNEI 342
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 152/306 (49%), Gaps = 38/306 (12%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW+ +I+CY+ N++ EA+ AF +M G P++ V AC++ + LG+ I
Sbjct: 5 RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++++ G F+ DV +G AL+DM+ K G L+ + VF ++ ++N+ W +I G
Sbjct: 65 FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEH 180
F+ +A+ +F M+ P+ T V+SAC GL+ GR+ L M G + V
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV-- 182
Query: 181 YGC-MVDLLSKA---GLLEDALELIRSSKFQPNAVIWGALL------GGCK---LHRNLE 227
GC +VD+ +K G ++DA ++ N + W A++ GGC + LE
Sbjct: 183 -GCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITGYVQSGGCDREAIELFLE 240
Query: 228 IAHIAVNELMILEPNNSGY------CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPG 281
+ V +PN+ + C L +++ +A V K+R+A C G
Sbjct: 241 MVQGQV------KPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLA------SINCVG 288
Query: 282 SSWIEM 287
+S I M
Sbjct: 289 NSLISM 294
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 125/255 (49%), Gaps = 9/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQF-REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP +++SWT +IT Y Q+ REA++ F EM + P+ T ++VL ACA+L + L
Sbjct: 209 MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL 268
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +++ V+++ +G++L+ MY++CG+++ + F L EKNL +N+I+ A
Sbjct: 269 GEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAK 328
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ EA +F+ + N TF S+LS + G + +G + S +
Sbjct: 329 SLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKG-EQIHSRILKSGFKSNLH 387
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNE 235
++ + S+ G +E A ++ N + W +++ G H R LE H +
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALETFHKMLEA 446
Query: 236 LMILEPNNSGYCTLL 250
+ PN Y +L
Sbjct: 447 G--VSPNEVTYIAVL 459
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 197/329 (59%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R +++W MI+ Y QN A++ + EM+ + + PD T T LSACA GALDLGRE+
Sbjct: 173 RSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREV 232
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
++ D+ V++GSALV+MYA+CG + ++ F +L+E+N+ W S+I G +HG
Sbjct: 233 ERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHG 292
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EA+ +F M E PN VTF++VL+AC HAGLV EGR F SM Y + P EHY
Sbjct: 293 CEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCS 352
Query: 184 MVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
MVD+ +AGLL+DA++ IR S +P +W A+LG CK+H+N + L+ LEP
Sbjct: 353 MVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPE 412
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N + LL N+YA + V K+R M + ++K+ G S IE+ + F +KSH
Sbjct: 413 NPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQI-GYSLIELGGTSHLFRMGEKSHQ 471
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ EIY L +L ++ A YVPE +++L
Sbjct: 472 QTREIYQYLEELIHRISDAGYVPETDSVL 500
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 12/203 (5%)
Query: 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI 113
L AL G +H + + +GF D ++ +ALV +Y+KCG L + +F +R++++ WN++
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181
Query: 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTC 170
I G +G A A+ ++ M V P+ TF++ LSAC AG ++ GR RR +S
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQM 241
Query: 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
S+ +V++ ++ GL+ A + + + N V W +++ G +H +
Sbjct: 242 DVSVFLG----SALVNMYARCGLVSKARDWFDRLQ-ERNVVTWTSMIAGYGMHGH-GCEA 295
Query: 231 IAVNELMILE---PNNSGYCTLL 250
I + LM LE PN+ + +L
Sbjct: 296 IKLFHLMRLEGPTPNDVTFVAVL 318
>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 846
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 202/326 (61%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D I W +MI+ +SQN + A+D F +M SG D V++++ LS+ A+L AL G
Sbjct: 509 MSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYG 568
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H YV++ F D ++ SAL+DMY+KCG L + VF + KN WNSII H
Sbjct: 569 KEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNH 628
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A E L +F M+ V P+ VTF+ ++SAC HAGLV EG F MT Y I +EH
Sbjct: 629 GCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEH 688
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL +AG L +A + I+S F P+A +WG LLG C+LH N+E+A +A L+ L+
Sbjct: 689 YACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELD 748
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL N++A+ W V K+R MKE G++K PG SWI++ + F+A++ +
Sbjct: 749 PKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQK-IPGYSWIDVNGGTHMFSAAEGN 807
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S EIY L+ L +L+ YVP+
Sbjct: 808 HPESVEIYLILNSLLLELRKQGYVPQ 833
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 6/246 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD I W M+ Y ++ F A+ F M+ S + VT +LS CA G LG
Sbjct: 206 LPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLG 265
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V+ GF+ D + + LV MY+KCG+L + +F + + + WN +I G +
Sbjct: 266 TQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQN 325
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA +F+ MI V+P+ VTF S L + +G + + S + + +V
Sbjct: 326 GFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVH-SYIVRHRVPFDVYL 384
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ K G +E A ++ + + AV A++ G LH L I I +I E
Sbjct: 385 KSALIDIYFKGGDVEMARKIFQQNTLVDVAVC-TAMISGYVLH-GLNIDAINTFRWLIQE 442
Query: 241 ---PNN 243
PN+
Sbjct: 443 GMVPNS 448
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D ++W +I Y QN EA FN M ++G+ PD VT A+ L + G+L
Sbjct: 307 MPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHC 366
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H Y+++ DVY+ SAL+D+Y K G ++ + +F + ++ ++I G +H
Sbjct: 367 KEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLH 426
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ F +I E + PN +T SVL AC ++ G+ + + ++E+
Sbjct: 427 GLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDI-----LKKQLEN 481
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ D+ +K G L+ A E R + +++ W +++
Sbjct: 482 IVNVGSAITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMI 521
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 4/216 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+ + W MI F AL + +M S +SPD+ T V+ AC L + L +H
Sbjct: 109 NALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVH 168
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+GF +D+++GSAL+ +YA G + + VF +L +++ WN ++ G G +
Sbjct: 169 NTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFN 228
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGC 183
A+ F M N VT+ +LS C G G + L + G+ P+V +
Sbjct: 229 NAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVAN--T 286
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + SK G L DA +L + Q + V W L+ G
Sbjct: 287 LVAMYSKCGNLFDARKLFNTMP-QTDTVTWNGLIAG 321
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 77/129 (59%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ T MI+ Y + +A++ F + G+ P+ +TMA+VL ACA L AL LG+E+H
Sbjct: 412 DVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELH 471
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+++ + V +GSA+ DMYAKCG LD + F ++ E + CWNS+I + +G
Sbjct: 472 CDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPE 531
Query: 125 EALAMFDRM 133
A+ +F +M
Sbjct: 532 MAVDLFRQM 540
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103
+ ++ AC+ + R++H ++ G + S ++ +Y CG + +FF L
Sbjct: 47 LESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLE 106
Query: 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
N WN +I GL + G+ AL + +M+ NV P+ TF V+ AC
Sbjct: 107 LCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 203/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
M + + SW+++I ++ + + E L +M G ++ + + LSAC HLG+ +L
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNL 251
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH +++ +++V + ++L+DMY KCGSL++ L VF + KN + + +I GLA+
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F M+ E + P+ V ++ VLSAC+HAGLV EG + F M + I P ++
Sbjct: 312 HGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQ 371
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL+ +AG+L++A +LI+S +PN V+W +LL CK+H NLEI IA + L
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRL 431
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+N G +L NMYA +WA V +IR M E + + PG S +E R VY+F + DK
Sbjct: 432 NKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHL-VQTPGFSLVEANRNVYKFVSQDK 490
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
S P + IY + +++ QLK Y P++ +L
Sbjct: 491 SQPICETIYDMIQQMEWQLKFEGYTPDMSQVL 522
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TMI + EAL + EM GI PD T VL AC+ L AL G +IH +V
Sbjct: 99 YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ G ++DV++ + L+ MY KCG+++ + +VF ++ EK++ W+SII A HE L
Sbjct: 159 KAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218
Query: 129 MFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGR 162
+ M E +S LSACTH G GR
Sbjct: 219 LLGDMSGEGRHRAEESILVSALSACTHLGSPNLGR 253
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA--KCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+++H +++++G D + GS LV A + GS++ + +F ++ E F +N++I G
Sbjct: 48 KQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNV 107
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
EAL ++ M+ +EP+ T+ VL AC+ +++ G I V
Sbjct: 108 NSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACS----------LLVALKEGVQIHAHV 157
Query: 179 EHYGCMVDLLSKAGLL 194
G VD+ + GL+
Sbjct: 158 FKAGLEVDVFVQNGLI 173
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/286 (45%), Positives = 191/286 (66%), Gaps = 4/286 (1%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLG 60
+D++ + MI CY+QN + EAL+ FN M N + PD++T+A+V+SAC+ LG L G
Sbjct: 143 GKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFG 202
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ ++G ++D ++ +AL+D+YAKCGS+D++ +F LR+K+L + ++I G ++
Sbjct: 203 PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGIN 262
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ +FD M+ + PN +TFI +L+A HAGLVEEG R F SM Y++ P V+H
Sbjct: 263 GKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDH 321
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDL +AG L++ALELI+S QP+A +WGALL C+LH N+E IA LE
Sbjct: 322 YGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE 381
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286
P+ +GY +LL N+YA RW +V ++R KE G K PG SW+E
Sbjct: 382 PDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSK-IPGCSWME 426
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 24/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +M+ Y + +A F +M + + ++S G +D
Sbjct: 48 MAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERNFA----SWNAMISGHVEFGDIDSA 103
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + Q + ++ Y+KCG +D + +F ++ K+L +N++I A +
Sbjct: 104 RSFFDAMPQK----NNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQN 159
Query: 121 GFAHEALAMFDRMI--YENVEPNGVTFISVLSACTHAG------LVEEGRRRFLSMTCGY 172
+EAL +F+ M+ Y NV+P+ +T SV+SAC+ G +E RR G+
Sbjct: 160 SRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGH 219
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
T ++DL +K G ++ A EL + + + V + A++ GC ++
Sbjct: 220 LAT-------ALLDLYAKCGSIDKAYELFHGLR-KKDLVAYTAMILGCGIN 262
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 60 GREIHLYVMQIGFDID---VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
G IH V + GF +Y+ +ALVD Y K G ++ + +F ++ E+N+ WNS++ G
Sbjct: 3 GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 62
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
G +A ++F +M E N ++ +++S G ++ R F +M +++
Sbjct: 63 YLKAGDMEKASSLFQQM----PERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVS- 117
Query: 177 EVEHYGCMVDLLSKAGLLEDALELI 201
+ M+ SK G ++ A EL
Sbjct: 118 ----WMTMISGYSKCGDVDSACELF 138
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 207/333 (62%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D +SW+TMI ++ N F EA F E++ G+ P++V++ LSACA GA++ G
Sbjct: 229 MPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFG 288
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV 119
+ +H ++ + GF V + +AL+D Y+KCG++ + LVF ++ EK ++ W S+I GLA+
Sbjct: 289 KILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAM 348
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG+ EA+ +F M + P+G+ FIS+L AC+HAGL+E+G F M Y+I P +E
Sbjct: 349 HGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIE 408
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDL +AG L+ A E I P A+IW LLG C +H N+++A L L
Sbjct: 409 HYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSEL 468
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+PNNSG LL N+YA +W +V +R +M + + K PG S IE+++ +Y F A +
Sbjct: 469 DPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNK-TPGWSMIEVDKIMYSFVAGEV 527
Query: 300 SHPASDEIYSSLSKLDEQLKL-ASYVPELEAML 331
+ ++E Y L ++ +L++ Y+PE+ ++L
Sbjct: 528 QNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVL 560
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 13/235 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
P D+ T+I +++ + +L F EM+ +P D + A +L A A +L+
Sbjct: 65 FPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLES 124
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G ++H + G D +++G+ LV MY++CG + + VF ++ E N+ WN+++
Sbjct: 125 GIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A MF+RM + N+ V +L+ T AG +E R+ FL M ++
Sbjct: 185 CGDVKGADMMFNRMPFRNLTSWNV----MLAGYTKAGELELARKLFLEMPVKDDVS---- 236
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSK---FQPNAVIWGALLGGCKLHRNLEIAHI 231
+ M+ + G +A R + +PN V L C +E I
Sbjct: 237 -WSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKI 290
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 13/216 (6%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+++ YS+ A F EM P+ V V++AC G + G ++ M
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEM----FEPNVVAWNAVVTACFRCGDVK-GADMMFNRMP 199
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
++ + ++ Y K G L+ + +F ++ K+ W+++I G A +GF +EA
Sbjct: 200 FR---NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGF 256
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDL 187
F + + PN V+ LSAC AG +E G+ F+ + G+ V + ++D
Sbjct: 257 FRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKS-GFLWMVSVNN--ALLDT 313
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G + A + + + V W +++ G +H
Sbjct: 314 YSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH 349
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV--DMYAKCGSLDRSLLVFFKL 102
+++L+ C L L +++H YV + G D D I L+ + +LD + +F
Sbjct: 9 SSLLTNCRSLKNL---KQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHF 65
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEG 161
++F N++I GLA +L F M P + +F +L A +E G
Sbjct: 66 PNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESG 125
Query: 162 RRRFLSMTCGYSITPEVEHY---GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
+ + C + H +V + S+ G + A ++ F+PN V W A++
Sbjct: 126 ----IQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFE-EMFEPNVVAWNAVVT 180
Query: 219 GC 220
C
Sbjct: 181 AC 182
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 211/328 (64%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + WTTM+ +QN + +AL F EM + PD T+++V+S+CA L +L G+ +
Sbjct: 285 KDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAV 344
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G D D+ + SALVDMY+KCG + +VF ++ +N+ WNS+I G A +G
Sbjct: 345 HGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKD 404
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EALA+++ M++EN++P+ +TF+ VLSAC HAGLVE G+ F S++ + + P +HY C
Sbjct: 405 LEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSC 464
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M++LL +AG ++ A++LI+S F+PN +IW LL C+++ ++ +A L L+P+N
Sbjct: 465 MINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHN 524
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+G +L N+YA RW +V +R MK I K+ SWIE++ +V++F A D++H
Sbjct: 525 AGPYIMLSNIYAACGRWKDVAAVRSLMKNNKI-KKFAAYSWIEIDNQVHKFVAEDRTHSE 583
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+++IY L++L ++L+ + + P+ +L
Sbjct: 584 TEQIYEELNRLIKKLQESGFTPDTNLVL 611
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +S+ T+I +S N +AL+ F M+ G T +VL AC+ L + G
Sbjct: 115 MSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRG 174
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ V++ +AL +MYAKCG+LD++ +F ++ KN+ WNS+I G +
Sbjct: 175 KQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQN 234
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +F M + P+ VT ++LSA G ++E + F + +
Sbjct: 235 GQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMM 294
Query: 181 YGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGC 220
GC ++ G EDAL L R +P+ +++ C
Sbjct: 295 VGC-----AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSC 332
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 51/258 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SW +MI+ Y QN Q F EM++SG+ PDQVT++ +LSA
Sbjct: 216 MVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA---------- 265
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
Y +CG +D + F +++EK+ CW +++ G A +
Sbjct: 266 -------------------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQN 300
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +AL +F M+ ENV P+ T SV+S+C + +G+ G ++ V+H
Sbjct: 301 GKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQ-----AVHGKAVIFGVDH 355
Query: 181 ----YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL-LGGCKLHRNLEIAHIAVNE 235
+VD+ SK G DA ++ N + W ++ LG + ++LE +A+ E
Sbjct: 356 DLLVSSALVDMYSKCGETADAW-IVFKRMLTRNVISWNSMILGYAQNGKDLEA--LALYE 412
Query: 236 LMI---LEPNNSGYCTLL 250
M+ L+P+N + +L
Sbjct: 413 EMLHENLKPDNITFVGVL 430
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISW +MI Y+QN + EAL + EM + + PD +T VLSAC H G ++ G
Sbjct: 383 MLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERG 442
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSL-LVFFKLREKNLFCWNSII 114
+ + +I G + S ++++ + G +D+++ L+ E N W++++
Sbjct: 443 QGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLL 498
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
DV+ +A++ Y+K G+++ VF ++ + +N++I G + +G + +AL F RM
Sbjct: 88 DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKA 191
E E T +SVL AC+ ++ G++ R ++ + G S+ + + ++ +K
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFV----WNALTNMYAKC 203
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGG 219
G L+ A L N V W +++ G
Sbjct: 204 GALDQARWLF-DRMVNKNVVSWNSMISG 230
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 201/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++ T MI+ +QN E L F +M+ G P A L+AC+ LGAL+ G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ +G++ + +G+A++ MYAKCG ++ + VF + +L WNS+I L H
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +FD+M+ E V P+ +TF++VL+AC+HAGLVE+GR F SM Y ITP +H
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y MVDL +AG+ A +I S +P A +W ALL GC++H N+++ A +L L
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N+YA+V RW EV K+R M++ + K P SWIE+E KV+ F D
Sbjct: 625 PQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKE-PACSWIEVENKVHVFMVDDDV 683
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +Y L +L ++K Y+P+ + +L
Sbjct: 684 HPEVLSVYRYLEQLGLEMKKLGYIPDTKFVL 714
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 70/290 (24%)
Query: 1 MPARDIISWTTMITCYSQNKQ-------------------------------FREALDAF 29
MP RD ++WTTMIT Y +N F+EAL
Sbjct: 218 MPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLC 277
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID----VYIGSALVDM 85
+M+ GI D +T T++SACA++G+ +G+++H Y+++ + + + + +AL+ +
Sbjct: 278 RKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITL 337
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSI-------------------------------I 114
Y K +D + +F+ + +N+ WN+I I
Sbjct: 338 YCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMI 397
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYS 173
GLA +GF E L +F +M + EP F L+AC+ G +E GR+ + GY
Sbjct: 398 SGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYE 457
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ V + M+ + +K G++E A E + + + V W +++ H
Sbjct: 458 SSLSVGN--AMISMYAKCGVVE-AAESVFVTMPSVDLVSWNSMIAALGQH 504
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 55/265 (20%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDLGRE 62
RD + + MIT Y+ N AL+ F M+ PD T +VLSA +G +
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169
Query: 63 IHLYVMQIGFD-IDVYIGSALVDMYAK--------CGSLDRSLLVFFKLREKNLFCWNSI 113
+H V++ G + + +AL+ +Y K C ++ + +F ++ +++ W ++
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTM 229
Query: 114 IEGLA--------------------------VHGFAH-----EALAMFDRMIYENVEPNG 142
I G + G+ H EAL + +M + ++ +
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV--EHYGC------MVDLLSKAGLL 194
+T+ +++SAC + G + G++ Y + E+ H C ++ L K +
Sbjct: 290 ITYTTIISACANVGSFQMGKQ-----VHAYILKNELNPNHSFCLSVSNALITLYCKNNKV 344
Query: 195 EDALELIRSSKFQPNAVIWGALLGG 219
++A ++ + + N + W A+L G
Sbjct: 345 DEARKIFYAMPVR-NIITWNAILSG 368
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 201/329 (61%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+++WT MI Y Q+ + EA++ F M P+ T+A +LS + L +L G++I
Sbjct: 376 RDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQI 435
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGF 122
H ++ G V + +AL+ MYAK GS+ + F +R E++ W S+I LA HG
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A EAL +F+ M+ E + P+ +T++ V SACTHAGLV +GR+ F M I P + HY
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL +AGLL++A E I +P+ V WG+LL C++++N+++ +A L++LEP
Sbjct: 556 CMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPE 615
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSG + L N+Y+ +W E KIR +MK+ G K+ G SWIE++ KV+ F D HP
Sbjct: 616 NSGAYSALANLYSACGKWEEAAKIRKSMKD-GRVKKEQGFSWIEVKHKVHAFGVEDGIHP 674
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
+EIY ++ K+ +++K YVP+ ++L
Sbjct: 675 QKNEIYITMKKIWDEIKKMGYVPDTASVL 703
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 35/234 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD +SWTTMI Y Q+ +A+ EM GI P Q T+ VL++ A L+ G
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETG 165
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC------------------------------- 89
+++H +++++G +V + ++L++MYAKC
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQV 225
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISV 148
G +D ++ F ++ E+++ WNS+I G G+ AL MF +M+ ++ + P+ T SV
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASV 285
Query: 149 LSACTHAGLVEEGRRRFLSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201
LSAC + + G + + T G+ I+ V ++ + S+ G +E A LI
Sbjct: 286 LSACANLEKLCIGEQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLI 337
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 42/277 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M RDI++W +MI+ Y+Q ALD F++M ++S +SPD+ T+A+VLSACA+L L +
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDM---------------------------------Y 86
G +IH +++ GFDI + +AL+ M Y
Sbjct: 298 GEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
K G ++ + +F L+++++ W ++I G HG EA+ +F M+ E PN T
Sbjct: 358 IKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLA 417
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED---ALELIRS 203
++LS + + G++ S I V ++ + +KAG + A +LIR
Sbjct: 418 AMLSVASSLASLGHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGSITSASRAFDLIRC 476
Query: 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ + V W +++ H + E A + + E M++E
Sbjct: 477 ER---DTVSWTSMIIALAQHGHAEEA-LELFETMLME 509
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ ++ YAK G +D S F +L +++ W ++I G G H+A+ + M+ E +E
Sbjct: 84 NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143
Query: 140 PNGVTFISVLSACTHAGLVEEGRR 163
P+ T +VL++ +E G++
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKK 167
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 200/323 (61%), Gaps = 8/323 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW ++I QN F E L F +M + I P + ++++ ACAHL L LG+++
Sbjct: 303 RDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL 362
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ + GFD +++I S+LVDMYAKCG++ + +F ++R +++ W ++I G A+HG A
Sbjct: 363 HGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A+ +F++M E ++ +VL+AC+H GLV+E + F SMT + I P VEHY
Sbjct: 423 PDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAA 475
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ DLL +AG LE+A + I P IW LL C++H+N+++A N ++ ++PNN
Sbjct: 476 VSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNN 535
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+G LL N+Y+ RW E K R +M+ +GI K P SWIE++ KVY F A D+SHP
Sbjct: 536 TGAYILLANIYSAARRWKEAAKWRASMRRIGIRK-TPACSWIEVKNKVYAFMAGDESHPC 594
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
++I ++ L E ++ YVP+
Sbjct: 595 YEKIREAMEVLVELMEKEGYVPD 617
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW T+I ++N + E L EM + + PD T+++VL A + G
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG 258
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH ++ G D D+Y+ S+L+DMYAKC + S VF L E++ WNSII G +
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F +M+ ++P +F S++ AC H + G++ +T +
Sbjct: 319 GLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFI 377
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A ++ + + + V W A++ GC LH
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 34/246 (13%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W ++I CY+ + ++L +F M SG+ PD +VL +CA L L+LG +H Y
Sbjct: 72 LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRS------------------------------- 95
++++G D D+Y G+AL++MY+K L+ S
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191
Query: 96 -LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
+F + EK+L WN+II G A +G E L M M N++P+ T SVL
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251
Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
+ G + + + ++ ++D+ +K + D+ + + + + + W
Sbjct: 252 NVDISRG-KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF-TLLTERDGISWN 309
Query: 215 ALLGGC 220
+++ GC
Sbjct: 310 SIIAGC 315
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD++SWT MI + + Q +A++ F +M+ GI VL+AC+H G +D
Sbjct: 401 MRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVD-- 451
Query: 61 REIHLYVMQIGFDIDVYIG----SALVDMYAKCGSLDRS 95
E Y + D + G +A+ D+ + G L+ +
Sbjct: 452 -EAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA 489
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
+Y+ L SL +F + W S+I HG H++L F M+ + P+
Sbjct: 49 IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108
Query: 145 FISVLSAC 152
F SVL +C
Sbjct: 109 FPSVLKSC 116
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 202/323 (62%), Gaps = 2/323 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+ISW T+I YS+N E+ F++M P+ VTM +L A A + +L+ GREI
Sbjct: 683 KDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREI 741
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y ++ GF D Y +ALVDMY KCG+L + ++F +L +KNL W +I G +HGF
Sbjct: 742 HAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFG 801
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+A+F++M +EP+ +F ++L AC H+GL EGRR F +M Y I P+++HY C
Sbjct: 802 KHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTC 861
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLLS+ G L++ALE I S +P++ IW +LL GC++H+N+++A +++ LEP N
Sbjct: 862 IVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPEN 921
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+GY LL N+YAE RW V K++ + G+ + G SWIE+ KV+ F A +++HP
Sbjct: 922 TGYYVLLANIYAEAERWEAVKKLKNKIGGRGLREN-TGYSWIEVRSKVHVFIADNRNHPD 980
Query: 304 SDEIYSSLSKLDEQLKLASYVPE 326
+ I L + +++ + P+
Sbjct: 981 WNRIAEFLDDVARRMRQEGHDPK 1003
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 33/280 (11%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP A D+ WT++++ Y++ F+EA+ F +M+ G+SPD ++ VL + LG+L
Sbjct: 162 MPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLT 221
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G IH + ++G + +AL+ +Y++CG ++ + VF + ++ WNS+I G
Sbjct: 222 EGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCF 281
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+G+ A+ +F +M + E + VT +SVL AC AGL GY + +
Sbjct: 282 SNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC--AGL-------------GYGLIGKA 326
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
H G V K+GLL L+ ++S I A LG + ++ +A +
Sbjct: 327 VH-GYSV----KSGLLW-GLDSVQSG-------IDDAALGSKLVFMYVKCGDMASARRVF 373
Query: 239 LEPNNSGYC---TLLLNMYAEVSRWAEVTKIRVAMKELGI 275
++ G L++ YA+V + E + V M ELGI
Sbjct: 374 DAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGI 413
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 11/255 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT MIT Y + F + EM GI PD + + L A A +L G
Sbjct: 579 MGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQG 638
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H Y ++ G + + + +AL++MY KC +++ + L+F ++ K++ WN++I G + +
Sbjct: 639 KSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRN 698
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
F +E+ ++F M+ + PN VT +L A +E GR ++ G+ +
Sbjct: 699 NFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGF--LEDSY 755
Query: 180 HYGCMVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+VD+ K G L A L R +K N + W ++ G +H + A IA+ E M
Sbjct: 756 ASNALVDMYVKCGALLVARVLFDRLTK--KNLISWTIMIAGYGMHGFGKHA-IALFEQMR 812
Query: 239 ---LEPNNSGYCTLL 250
+EP+ + + +L
Sbjct: 813 GSGIEPDAASFSAIL 827
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 10/213 (4%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ Y++ +F E+L F +M GI+PD+ ++ +L L G H Y++
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV 444
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++GF + +AL+ YAK + ++LVF ++ ++ WNS+I G + +G EA+
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIE 504
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP----EVEHYGCM 184
+F RM + E + VT +SVL AC + GR + GYS+ E +
Sbjct: 505 LFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGR-----VVHGYSVKTGLIGETSLANAL 559
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+D+ S + ++ RS Q N V W A++
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMG-QKNVVSWTAMI 591
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 10/223 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D ISW ++I+ S N EA++ F M G D VT+ +VL ACA G
Sbjct: 478 MPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAG 537
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y ++ G + + +AL+DMY+ C + +F + +KN+ W ++I
Sbjct: 538 RVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRA 597
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + + M+ + + P+ S L A +++G+ GY+I +E
Sbjct: 598 GLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKS-----VHGYTIRNGMEK 652
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++++ K +E+A LI + + W L+GG
Sbjct: 653 LLPVANALMEMYVKCRNVEEA-RLIFDRVTNKDVISWNTLIGG 694
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 25/237 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISW +MI N A+D F++M + G VT+ +VL ACA LG +G
Sbjct: 265 MHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIG 324
Query: 61 REIHLY-----------VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLF 108
+ +H Y +Q G D D +GS LV MY KCG + + VF + K N+
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGID-DAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVH 383
Query: 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS-----ACTHAGLVEEGRR 163
WN I+ G A G E+L++F +M + P+ +L +C GLV G
Sbjct: 384 VWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG-- 441
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+ G+ V + ++ +K+ ++ DA+ L+ + + + + W +++ GC
Sbjct: 442 --YIVKLGFGAQCAVCN--ALISFYAKSNMIGDAV-LVFNRMPRQDTISWNSVISGC 493
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKL--REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
+G LV Y KCG L + VF + + ++ W S++ A G EA+++F +M
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLL 188
V P+ VL + G + EG + L C + ++ +
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVA--------NALIAVY 249
Query: 189 SKAGLLEDALELIRSSKFQP-NAVIWGALLGGC 220
S+ G +EDA + S P +A+ W +++GGC
Sbjct: 250 SRCGRMEDAARVFDS--MHPRDAISWNSMIGGC 280
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 203/329 (61%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH-LGALDLGRE 62
+DI++W+ M++ Y+Q A+ F ++ G+ P++ T ++VL+ACA +++ G++
Sbjct: 456 KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ 515
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ GF + + SALV MYAK G+++ + VF + +++L WNS+I G A HG
Sbjct: 516 FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGC 575
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
++L +F+ M +N+E +G+TFI V+SACTHAGLV EG+R F M Y I P +EHY
Sbjct: 576 GKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYS 635
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDL S+AG+LE A++LI F A IW LL C++H N+++ +A +L+ L+P
Sbjct: 636 CMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQ 695
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL N+YA W E K+R M ++K G SWIE++ K + F A D SHP
Sbjct: 696 DSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEA-GYSWIEVKNKTFSFMAGDLSHP 754
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
SD IY L +L +LK A Y P+ + +L
Sbjct: 755 QSDRIYLKLEELSIRLKDAGYYPDTKYVL 783
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 2/204 (0%)
Query: 16 YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75
+S+N Q +EAL+ F ++ SG D +++ VL C L +G+++H ++ GF D
Sbjct: 67 FSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVED 126
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135
V +G++LVDMY K S++ VF ++R KN+ W S++ G +G +AL +F +M
Sbjct: 127 VSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQL 186
Query: 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
E ++PN TF +VL G VE+G + +M + + MV++ SK+ ++
Sbjct: 187 EGIKPNPFTFAAVLGGLAADGAVEKG-VQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245
Query: 196 DALELIRSSKFQPNAVIWGALLGG 219
DA + S + NAV W +++ G
Sbjct: 246 DAKAVFDSME-NRNAVSWNSMIAG 268
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT+++ Y QN +AL F++M+ GI P+ T A VL A GA++ G
Sbjct: 153 MRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG 212
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V++ G D +++G+++V+MY+K + + VF + +N WNS+I G +
Sbjct: 213 VQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTN 272
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA +F RM E V+ F +V+ C + ++E M+ + +V
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN---IKE-------MSFAKQLHCQVIK 322
Query: 181 YGCMVDL---------LSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G DL SK ++DA +L N V W A++ G
Sbjct: 323 NGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 117/220 (53%), Gaps = 5/220 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++SWT +I+ Y QN + A++ F +M+ G+ P+ T +T+L+A A + +I
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQI 414
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ ++ +G+AL D Y+K G + + +F + EK++ W++++ G A G
Sbjct: 415 HALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDI 474
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ +F ++ E VEPN TF SVL+AC E ++F S + + +
Sbjct: 475 EGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSA 534
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+V + +K G +E A E+ + + + V W +++ G H
Sbjct: 535 LVTMYAKRGNIESANEVFK-RQVDRDLVSWNSMISGYAQH 573
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 198/316 (62%), Gaps = 3/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M R++ SW +I Y+QN + E L +F M + G + P+ T+ VLSACA LGA D
Sbjct: 144 MLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDF 203
Query: 60 GREIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ +H Y +G++ +DV + +AL+DMY KCG+++ ++ VF ++ ++L WN++I GLA
Sbjct: 204 GKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 263
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL +F M + P+ VTF+ VL AC H GLVE+G F SM +SITP++
Sbjct: 264 AHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQI 323
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EH GC+VDLLS+AG L A+E I + +AVIW LLG K+++ ++ +A+ EL+
Sbjct: 324 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIK 383
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N +L N+Y + R+ + +++VAM++ G +K G SWIE + + +F +S
Sbjct: 384 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKE-AGISWIETDDGLVKFYSSG 442
Query: 299 KSHPASDEIYSSLSKL 314
+ HP ++E+ L +L
Sbjct: 443 EKHPRTEELQRILGEL 458
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 24/231 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP--DQVTMATVLSACAHLGALD 58
M ++++ WT+MI Y NK A F+ +SP D V T+++ +G +
Sbjct: 51 MVEKNVVIWTSMINGYLLNKDLVSARRYFD------LSPERDIVLWNTMVAGYIEMGNMM 104
Query: 59 LGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
R + FD DV + +++ YA G ++ VF ++ E+N+F WN +I
Sbjct: 105 EARSL--------FDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLI 156
Query: 115 EGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGY 172
+G A +G E L F RM+ E +V PN T VLSAC G + G+R GY
Sbjct: 157 KGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGY 216
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +V ++D+ K G +E A+E+ + K + + + W ++ G H
Sbjct: 217 N-KVDVNVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAH 265
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 193/322 (59%), Gaps = 4/322 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD + W MI + FR+AL+ F +M + G+ D T+ ++LS C G L G
Sbjct: 168 MSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKG 227
Query: 61 REIHLYVM--QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+EIH V+ QI F +V IG++L+DMYAKCG L S VF + E NL W S+I
Sbjct: 228 KEIHGQVVKNQI-FGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYG 286
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG HEALA+F +M Y +PN VT ++L++C+H+GL+E+GR+ F S+ Y P
Sbjct: 287 VHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSA 346
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL + G LE+A ELI++ K A +WGALL GC +H+N+EI IA + L
Sbjct: 347 EHYACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFE 406
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP NS L +MY + W V++ R M+ELG+ K PG SWI + +V++F D
Sbjct: 407 LEPRNSSNYIALCSMYDSLGIWDGVSRTRAKMRELGLVKT-PGCSWITVAGRVHKFYQED 465
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
SHP + IY +L + L L
Sbjct: 466 LSHPETQMIYETLHGIVNILML 487
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 1/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ SW +I Y+ N F +AL F+ G PD T+ V ACA +G LG
Sbjct: 67 MVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H +V++IGF+ V +GS+++D YAKCG L + F + ++ WN +I GL
Sbjct: 127 KMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKA 186
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
F +AL F M+ E V+ + T S+LS C G + +G+ + EV
Sbjct: 187 CFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAI 246
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L D+ E + ++ + N V W +++ +H
Sbjct: 247 GNSLIDMYAKCGCLHDS-EKVFTTMSELNLVTWTSMISCYGVH 288
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
+++ +L C A+ ++ H ++ GF ++ + + L+ +Y+KCG L + VF K+
Sbjct: 8 SLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKM 67
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
E+N+ WN +I A + F ++AL +FD + P+ T V AC G G+
Sbjct: 68 VERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGK 127
Query: 163 RRFLSMTCGYSITPEVEHY----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
M + I E Y ++D +K G L DA + ++ ++V+W ++
Sbjct: 128 -----MLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWR-DSVVWNLMIV 181
Query: 219 G 219
G
Sbjct: 182 G 182
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++SWT M+ Y QN EA+ F +M+ +GI PD T+ +V+S+CA+L +L+ G
Sbjct: 331 MANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEG 390
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H + G + + +AL+ +Y KCGS++ S +F ++ ++ W +++ G A
Sbjct: 391 AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQF 450
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+E + +F+RM+ + ++P+ VTFI+VLSAC+ AGLVE G++ F SM + I P +H
Sbjct: 451 GKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDH 510
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CM+DL +AG LE+A I F P+++ W LL C+L+ N EI A L+ L+
Sbjct: 511 YTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELD 570
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N LL ++YA +W+ V ++R M+E G K PG SWI+ + KVY F+A D+S
Sbjct: 571 PQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKE-PGFSWIKYKSKVYIFSADDQS 629
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
P SD+IY+ L KL+ ++ YVP+ ++L
Sbjct: 630 SPFSDQIYAELEKLNHKMIEEGYVPDASSVL 660
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 126/219 (57%), Gaps = 2/219 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISWTTMIT QN EA+D F +M+ G++ DQ T +VL+AC L AL G
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH +++ G++ +V++GSALVDMY KC S+ + VF ++ KN+ W +++ G +
Sbjct: 290 KEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQN 349
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF+ EA+ +F M +EP+ T SV+S+C + +EEG +F + +
Sbjct: 350 GFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEG-AQFHCQALVSGLISFITV 408
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ L K G +ED+ +L F+ + V W AL+ G
Sbjct: 409 SNALITLYGKCGSIEDSNQLFDEMSFR-DEVSWTALVSG 446
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 36/252 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLGALDL 59
MP RD +SW ++I+ Y EA+ +N M G+ + +++T +T+L + G +DL
Sbjct: 97 MPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDL 156
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCG-------------------------SLDR 94
GR+IH +++ GF V++GS+LVDMYAK G L R
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216
Query: 95 SLLV------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
S +V F ++E++ W ++I GL +G EA+ +F M E + + TF SV
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSV 276
Query: 149 LSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
L+AC ++EG+ L + GY+ V +VD+ K + A E +
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSGYNHNVFVG--SALVDMYCKCRSVRYA-EAVFKRMAN 333
Query: 208 PNAVIWGALLGG 219
N V W A+L G
Sbjct: 334 KNVVSWTAMLVG 345
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 83/191 (43%), Gaps = 34/191 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF------------ 108
+++H +++ + + ++ + L++ Y+K G++ + VF K+ + N F
Sbjct: 25 KKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKS 84
Query: 109 -------------------CWNSIIEGLAVHGFAHEALAMFDRMIYENV-EPNGVTFISV 148
WNS+I G +G EA+ ++ M+ + V N +TF ++
Sbjct: 85 GDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTM 144
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
L + G V+ G R+ + V +VD+ +K GL+ A ++ + +
Sbjct: 145 LLLVSSQGCVDLG-RQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ-ER 202
Query: 209 NAVIWGALLGG 219
N V++ ++ G
Sbjct: 203 NVVMYNTMITG 213
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 211/332 (63%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SW ++ Y +N +AL F M + + + P+ T+++VL C++L AL
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G++IH + M++ ++ +G++LV MY KCG L + ++F ++ +++ WN++I G A
Sbjct: 260 GKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQ 319
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EA+ +F+RM E VEPN +TF+ VL+AC H GL + G + F M Y I P V+
Sbjct: 320 HGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVD 379
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL +AG LE A++ IRS F+P+ +G LL C++++NLE A +A +L+
Sbjct: 380 HYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEK 439
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P ++G L N+YA ++W +V+++R MK+ + K PG SWIE++ +++F ++D+
Sbjct: 440 DPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVK-TPGYSWIEIKGVLHEFRSNDR 498
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP I+ L +L E++K YVP+L+ +L
Sbjct: 499 LHPQLYLIHEKLGQLAERMKEMGYVPDLDFVL 530
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 201/326 (61%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++W T+I +QN F LD +N MK SG+ PD++T+ +V+S+ A L L G
Sbjct: 150 MRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQG 209
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ G + V + S+L+ MY+KCG L+ S+ + W+S+I H
Sbjct: 210 QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFH 269
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F++M E + N VTF+S+L AC+H GL E+G F M Y + P +EH
Sbjct: 270 GRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEH 329
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL ++G L++A +IRS + + VIW LL C++HRN ++A E++ L
Sbjct: 330 YTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLN 389
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P +S LL N++A RW +V+K+R M++ ++K PG SW+E++ +V+QF+ DKS
Sbjct: 390 PQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKE-PGVSWLEVKNRVFQFSMGDKS 448
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S+EI L +L E++KL YVP+
Sbjct: 449 HPMSEEIDLYLKELMEEMKLRGYVPD 474
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 3/232 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ +W M++ Q + L F EM G PD+ T+ +VL CA L A G
Sbjct: 49 MLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAG 108
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H YV++ G++ ++ +GS+L MY K GSL V +R +N+ WN++I G A +
Sbjct: 109 KQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQN 168
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L +++ M + P+ +T +SV+S+ + +G ++ + V
Sbjct: 169 GHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQG-QQIHAEAIKAGANSAVAV 227
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHI 231
++ + SK G LED+++ + + P++V+W +++ H R E H+
Sbjct: 228 LSSLISMYSKCGCLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGEEAVHL 278
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
L++ + + G LD ++ VF ++ E+N+ WN+++ GL F L +F M P+
Sbjct: 29 LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPD 88
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS---------KAG 192
T SVL C AGL R + G + V YG +L+ K+G
Sbjct: 89 EFTLGSVLRGC--AGL----RASY----AGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSG 138
Query: 193 LLEDALELIRSSKFQPNAVIWGALLGG 219
L + ++I++ + + N V W L+ G
Sbjct: 139 SLGEGEKVIKAMRIR-NVVAWNTLIAG 164
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 207/325 (63%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDII++ +MIT Y + Q REAL F M+ + D T+ ++LSACA LGAL G
Sbjct: 333 MEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQG 392
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + + D+YIG+AL+DMY KCG ++ + +VF ++ ++++ W ++I GLA +
Sbjct: 393 RALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFN 452
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L F +M + +PN V++I+VL+AC+H+ L+ EGR F M Y+I P++EH
Sbjct: 453 GMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH 512
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL ++GLL++A++L+++ QPN+VIW ++L C++H+ +++A A L+ +E
Sbjct: 513 YGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIE 572
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ L N+ + +W + +KIR+ M+E + K+ G S + + +V++F SDKS
Sbjct: 573 PDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQV-KKTAGYSSVTVAGQVHKFVVSDKS 631
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI + L ++ +LK A Y P
Sbjct: 632 HPRILEIIAMLEEISHRLKSAGYSP 656
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 144/283 (50%), Gaps = 4/283 (1%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG--REIHLYV 67
++IT + F AL+ + M G++PD VT + + A + + L + +H +
Sbjct: 1068 NSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCL 1127
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+++GF++D+ + S+L+ YA G L S L+F L + N+ C+ +II A +G A+
Sbjct: 1128 VKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAM 1187
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+FD+M+ ++P+ VTF+ ++ C AG+ EEGR M + P+ H+ CMV+L
Sbjct: 1188 ELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNL 1247
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
LS+ G +++A+E++ S + W +LL CK H + A N L+ + +
Sbjct: 1248 LSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATT 1307
Query: 248 TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
+ N + ++ +I+ ++K G S IE+ +
Sbjct: 1308 LQVSNFFNDIGDRETALRIKEMTNVKEVKKS--GHSLIEVSHR 1348
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 130/266 (48%), Gaps = 37/266 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ISWT++I YS+ + +EA+D F M + GI+PD VT+ VLSAC+ L L+LG
Sbjct: 201 PVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGC 260
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+H V + G + + AL+DMYAKCG + VF + R + WN+II+G H
Sbjct: 261 SLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKH 320
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ++FD+M ++ +TF S+++ H+G + E F++M
Sbjct: 321 GHVDVARSLFDQMEVRDI----ITFNSMITGYIHSGQLREALLLFMNM----------RR 366
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ VD + LL L GAL G LH A EL ++E
Sbjct: 367 HDLRVDNFTVVSLLSACASL-------------GALPQGRALH--------ACIELRLVE 405
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKI 266
+ T LL+MY + R E T +
Sbjct: 406 -TDIYIGTALLDMYMKCGRVNEATIV 430
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 27/232 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ D+ISW ++++ Y+ +EA+ +M G P + ++L+ G LG +
Sbjct: 959 SEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQ 1018
Query: 63 IHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V ++GF V++ + L+DMY KC D SL +F ++ L C NS+I
Sbjct: 1019 IHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCN 1078
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-------------HAGLVEEGRRRFLSM 168
AL + MI E V P+ VTF + + A + H+ LV+ G +++
Sbjct: 1079 MFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAV 1138
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
C IT Y C L S + E L+ PN + + A++ C
Sbjct: 1139 -CSSLITA----YACAGQLSSSHLIFEGLLD--------PNVICFTAIISAC 1177
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 10/220 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ S MIT + ++ A + M SGI T +T+L C+ AL
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 813
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V+ +G + ++GSALV+ Y S SL +F +L +N N ++ GL
Sbjct: 814 -QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNL 872
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG-LVEEGRRRFLSMTCGYSITPEVE 179
E + F M + +E NG+++ + C G +E+GR+ + I +
Sbjct: 873 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 932
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALL 217
+VDL S G D+++ +++ + + W ++L
Sbjct: 933 LSNSLVDLYSAIG---DSVDTVKALNDILSEDVISWNSIL 969
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
AK G L + L+ + +++ W S+I + A EA+ F M+ E + P+ VT I
Sbjct: 185 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 244
Query: 147 SVLSACTHAGLVEEG-------RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
VLSAC+ +E G + + +SM+ + ++D+ +K G A E
Sbjct: 245 GVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVA--------LIDMYAKCGDFGHARE 296
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ + W A++ G H ++++A +++ +
Sbjct: 297 VFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEV 335
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGREIHLYVMQIGF-DIDVY 77
K E + F +M+ + + ++ + C G L+ GR++H V++ G+ +++
Sbjct: 873 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 932
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+ ++LVD+Y+ G ++ + +++ WNSI+ A G EA+ +M++
Sbjct: 933 LSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG 992
Query: 138 VEPNGVTFISVLSACTHAG 156
P+ +F+S+L+ G
Sbjct: 993 KMPSIRSFVSLLALSGKTG 1011
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR-EI 63
++I +T +I+ ++ A++ F++M +SG+ PD VT ++ C G + GR I
Sbjct: 1166 NVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVI 1225
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF-CWNSIIEGLAVHG 121
L D D + +V++ ++ G + ++ + + ++ W+S+++ HG
Sbjct: 1226 ELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHG 1284
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 203/327 (62%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D I+W+ +I +N + EA++ F +M+ G PD+ T+ ++L AC+ L +G+EIH
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIH 603
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV + D D+ +ALVDMYAKCG L S VF + K++F WN++I +HG
Sbjct: 604 CYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGK 663
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL++F++M+ V+P+ TF VLSAC+H+ LVEEG + F SM+ + + PE EHY C+
Sbjct: 664 EALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCV 723
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+ S+AG LE+A I+ +P A+ W A L GC++++N+E+A I+ +L ++PN S
Sbjct: 724 VDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGS 783
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
L N+ W+E +KIR MKE GI K PG SW + +V+ F A DKS+ S
Sbjct: 784 ANYVTLFNILVTAKLWSEASKIRKLMKERGITKT-PGCSWFHVGNRVHTFVAGDKSNMES 842
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
D+IY+ L +L ++K A Y P+ + +L
Sbjct: 843 DKIYNFLDELFAKIKAAGYKPDTDYVL 869
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 94/162 (58%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++I+W ++ +CY ++ L+ F EM +G+ PD + M+++L AC+ L L G
Sbjct: 303 MPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG 362
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + ++ G DV++ +ALV++YA C + + VF + +N+ WNS+
Sbjct: 363 KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNC 422
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF + L +F M+ V+P+ VT +S+L AC+ ++ G+
Sbjct: 423 GFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGK 464
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 90/162 (55%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+++W ++ +CY ++ L+ F EM G+ PD VT++ +LSAC+ L L G
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + ++ G +V++ +ALV++Y C + + VF + +N+ WNS+
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNC 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
GF + L +F M V+P+ + S+L AC+ ++ G+
Sbjct: 322 GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK 363
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 91/160 (56%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
ARD+++W ++ CY ++ L+ F +M + + + +T++++L C+ L L G+E
Sbjct: 103 ARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKE 162
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +V++ G DV++ SA V+ YAKC + + VF + +++ WNS+ GF
Sbjct: 163 IHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGF 222
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+ L +F M+ + V+P+ VT +LSAC+ ++ G+
Sbjct: 223 PQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK 262
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 91/168 (54%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++W ++ +CY ++ L+ F EM +G+ PD VTM ++L AC+ L L G
Sbjct: 404 MPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG 463
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + ++ G DV++ +AL+ +YAKC + + +VF + + + WN I+ +
Sbjct: 464 KVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTN 523
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+ L MF +M + V+ + +T+ V+ C +EE F M
Sbjct: 524 KEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM 571
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%)
Query: 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83
EA+ + + GI PD+ V ACA ++ H + G DV IG+A +
Sbjct: 23 EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
Y KC ++ + VF L +++ WNS+ GF + L +F +M V+ N +
Sbjct: 83 HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142
Query: 144 TFISVLSACTHAGLVEEGR 162
T S+L C+ ++ G+
Sbjct: 143 TVSSILPGCSDLQDLKSGK 161
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 10/182 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ SW TMI + +EAL F +M S + PD T VLSAC+H ++ G
Sbjct: 641 MPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEG 700
Query: 61 REIHLYVMQ---IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG 116
+I + + + + + Y + +VD+Y++ G L+ + ++ E W + + G
Sbjct: 701 VQIFNSMSRDHLVEPEAEHY--TCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAG 758
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRR-RFLSMTCGYSI 174
V + + LA ++PNG ++++ + A L E + R L G +
Sbjct: 759 CRV--YKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITK 816
Query: 175 TP 176
TP
Sbjct: 817 TP 818
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 207/325 (63%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RDII++ +MIT Y + Q REAL F M+ + D T+ ++LSACA LGAL G
Sbjct: 271 MEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQG 330
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H + + D+YIG+AL+DMY KCG ++ + +VF ++ ++++ W ++I GLA +
Sbjct: 331 RALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFN 390
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L F +M + +PN V++I+VL+AC+H+ L+ EGR F M Y+I P++EH
Sbjct: 391 GMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH 450
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL ++GLL++A++L+++ QPN+VIW ++L C++H+ +++A A L+ +E
Sbjct: 451 YGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIE 510
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+ L N+ + +W + +KIR+ M+E + K+ G S + + +V++F SDKS
Sbjct: 511 PDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQV-KKTAGYSSVTVAGQVHKFVVSDKS 569
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP EI + L ++ +LK A Y P
Sbjct: 570 HPRILEIIAMLEEISHRLKSAGYSP 594
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 143/283 (50%), Gaps = 4/283 (1%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG--REIHLYV 67
++IT F AL+ + M G++PD VT + + A + + L + +H +
Sbjct: 1006 NSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCL 1065
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+++GF++D+ + S+L+ YA G L S L+F L + N+ C+ +II A +G A+
Sbjct: 1066 VKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAM 1125
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+FD+M+ ++P+ VTF+ ++ C AG+ EEGR M + P+ H+ CMV+L
Sbjct: 1126 ELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNL 1185
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
LS+ G +++A+E++ S + W +LL CK H + A N L+ + +
Sbjct: 1186 LSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATT 1245
Query: 248 TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
+ N + ++ +I+ ++K G S IE+ +
Sbjct: 1246 LQVSNFFNDIGDRETALRIKEMTNVKEVKKS--GHSLIEVSHR 1286
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 37/266 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD+ISWT++I YS+ + +EA+D F M + GI+PD VT+ VLSAC+ L L+LG
Sbjct: 139 PVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGC 198
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVH 120
+HL V + G + + AL+DMYAKCG + VF + R + WN+II+G H
Sbjct: 199 SLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKH 258
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A ++FD+M ++ +TF S+++ H+G + E F++M
Sbjct: 259 GHVDVARSLFDQMEVRDI----ITFNSMITGYIHSGQLREALLLFMNM----------RR 304
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ VD + LL L GAL G LH A EL ++E
Sbjct: 305 HDLRVDNFTVVSLLSACASL-------------GALPQGRALH--------ACIELRLVE 343
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKI 266
+ T LL+MY + R E T +
Sbjct: 344 -TDIYIGTALLDMYMKCGRVNEATIV 368
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 27/232 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
+ D+ISW ++++ Y+ +EA+ +M G P + ++L+ G LG +
Sbjct: 897 SEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQ 956
Query: 63 IHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
IH V ++GF V++ + L+DMY KC D SL +F ++ L C NS+I
Sbjct: 957 IHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCN 1016
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT-------------HAGLVEEGRRRFLSM 168
AL + MI E V P+ VTF + + A + H+ LV+ G +++
Sbjct: 1017 MFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAV 1076
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
C IT Y C L S + E L+ PN + + A++ C
Sbjct: 1077 -CSSLITA----YACAGQLSSSHLIFEGLLD--------PNVICFTAIISAC 1115
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ S MIT + ++ A + M SGI T +T+L C+ AL
Sbjct: 695 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 751
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H V+ +G + ++GSALV+ Y S +L +F +L +N N ++ GL
Sbjct: 752 -QLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNL 810
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG-LVEEGRR-RFLSMTCGYSITPEV 178
E + F M + +E NG+++ + C G +E+GR+ + + G+ I +
Sbjct: 811 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGW-IPSNI 869
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALL 217
+VDL S G D+++ +++ + + W ++L
Sbjct: 870 FLSNSLVDLYSAIG---DSVDTVKALNDILSEDVISWNSIL 907
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
AK G L + L+ + +++ W S+I + A EA+ F M+ E + P+ VT I
Sbjct: 123 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 182
Query: 147 SVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
VLSAC+ +E G L G S++ + ++D+ +K G A E+ +
Sbjct: 183 GVLSACSQLKDLELGCSLHLLVKEKGMSMSENL--VVALIDMYAKCGDFGHAREVFDAVG 240
Query: 206 FQPNAVIWGALLGGCKLHRNLEIA-----HIAVNELMILEPNNSGY 246
W A++ G H ++++A + V +++ +GY
Sbjct: 241 RGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGY 286
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGREIHLYVMQIGF-DIDVY 77
K E + F +M+ + + ++ + C G L+ GR++H V++ G+ +++
Sbjct: 811 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 870
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+ ++LVD+Y+ G ++ + +++ WNSI+ A G EA+ +M++
Sbjct: 871 LSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG 930
Query: 138 VEPNGVTFISVLSACTHAG 156
P+ +F+S+L+ G
Sbjct: 931 KMPSVRSFVSLLALSGKTG 949
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR-EI 63
++I +T +I+ ++ A++ F++M +SG+ PD VT ++ C G + GR I
Sbjct: 1104 NVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVI 1163
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LREKNLFCWNSIIEGLAVHG 121
L D D + +V++ ++ G + ++ + + LR W+S+++ HG
Sbjct: 1164 ELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTK-AWSSLLQSCKAHG 1222
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 199/318 (62%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MPA D +SWT +I +N + EA+D F+ M G+ PD VT+ +SACA +GAL LG
Sbjct: 163 MPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLG 222
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H +V+ + +V + ++L+DMYA+CG +D + VF ++R++ + WNS+I G A +
Sbjct: 223 MWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAAN 282
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ F+ M E +P+ VTF VL+AC+HAGL +EG R + +M + I +EH
Sbjct: 283 GQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEH 342
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AG L +A+ ++ S +PN V+ GALL GC++H ++++A + L+ +
Sbjct: 343 YGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQD 402
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P LL N+YA V +W K+R MK G++KR PG S +E++ +V++F D+S
Sbjct: 403 PGGDSNYVLLSNIYAAVGKWGGAGKVRSLMKSRGVKKR-PGQSTVEIDGEVHEFVCGDRS 461
Query: 301 HPASDEIYSSLSKLDEQL 318
HP + E++ L L ++
Sbjct: 462 HPQAREVFEVLGLLTHEM 479
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 50/261 (19%)
Query: 1 MPARDIISWTTMITCYSQ--NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
+P RD++SWT+ I ++ + Q A + + P+ VT+ TVLSACA +
Sbjct: 26 LPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSSSA 85
Query: 59 LGREIHLYVMQIGFDI------------DVYIGSALVDMYAKC--GSLDRSLL------- 97
L R + L + + + Y+ S L + K DRS++
Sbjct: 86 LARPLALSLHALAVKLFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNTMIT 145
Query: 98 -------------VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
VF ++ + W ++I+G +G EA+ F M+ + VEP+ VT
Sbjct: 146 GLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVT 205
Query: 145 FISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEVEH----YGCMVDLLSKAGLLEDAL 198
++ +SAC G + G RF+ + +EH ++D+ ++ G ++ A
Sbjct: 206 LVAAISACAEVGALGLGMWVHRFV-------VDKRLEHNVRVANSLIDMYARCGQVDFAR 258
Query: 199 ELIRSSKFQPNAVIWGALLGG 219
++ + + V W +++ G
Sbjct: 259 QVFGRIRKR-TVVSWNSMIVG 278
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 199/321 (61%), Gaps = 1/321 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ WT+MI Y QN + +AL + M+ GI P+++TMA+VL AC++L A D GR+IH
Sbjct: 378 DLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIH 437
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++ G ++V IGSAL MYAKCG+L+ +VF ++ E+++ WN++I GL+ +G+
Sbjct: 438 ARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGK 497
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +F+ M ++ +P+ VTF++VLSAC+H GLV+ G F M + + P+VEHY CM
Sbjct: 498 EALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACM 557
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VD+LS+AG L +A E I S+ +W LLG C+ +RN E+ A +LM L S
Sbjct: 558 VDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQES 617
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
LL +Y + R +V ++R MK G+ K PG SWIE++ V+ F D+ HP
Sbjct: 618 SAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKE-PGCSWIELKSNVHVFVVGDQMHPCI 676
Query: 305 DEIYSSLSKLDEQLKLASYVP 325
EI + + +L +Q+K Y P
Sbjct: 677 GEIRTEILRLSKQMKDEGYQP 697
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ++W TMI+ Y+ + EA + F M+ ++ +VLSA A +D G
Sbjct: 172 MPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ G + + I +ALV MYAKCGSLD SL VF +KN W+++I G A
Sbjct: 232 KQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQS 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEV 178
G +H+AL +F RM + + P+ T + VL+AC+ A VEEG++ +L + G+ ++
Sbjct: 292 GDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYL-LKLGFE--SQL 348
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ +K+G+ EDA + + QP+ V+W +++ G
Sbjct: 349 YIMTALVDMYAKSGVTEDARKGFNYLQ-QPDLVLWTSMIAG 388
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ I+W+ MIT Y+Q+ +AL F+ M +GI+P + T+ VL+AC+ A++ G+++
Sbjct: 276 KNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQV 335
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y++++GF+ +YI +ALVDMYAK G + + F L++ +L W S+I G +G
Sbjct: 336 HNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGEN 395
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL+++ RM E + PN +T SVL AC++ ++G R+ + T Y + EV
Sbjct: 396 EDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG-RQIHARTIKYGLGLEVTIGSA 454
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + +K G LE+ + R + + + W A++ G
Sbjct: 455 LSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMISG 489
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREA--LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
+D+ISW +I YSQ + ++ F M+ I P+ T + + +A ++L ++ G+
Sbjct: 72 KDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQ 131
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+ H +++ DV++GS+L++MY K G L + VF ++ E+N W ++I G A+
Sbjct: 132 QAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQR 191
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEH 180
A EA +F+ M E + N F SVLSA V+ G++ L++ G + +
Sbjct: 192 LAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSI-- 249
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V + +K G L+D+L++ S N++ W A++ G
Sbjct: 250 LNALVTMYAKCGSLDDSLQVFEMSN-DKNSITWSAMITG 287
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRS 95
+ P ++ L H +L GR +H ++++ +Y+ ++L++ YAKC L ++
Sbjct: 3 LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKA 62
Query: 96 LLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM--FDRMIYENVEPNGVTFISVLSACT 153
LVF ++ K++ WN +I G + G + M F RM +N+ PN TF + +A +
Sbjct: 63 KLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAAS 122
Query: 154 HAGLVEEGRRRF---LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA 210
+ + G++ + M C Y + ++++ KAGLL +A E+ + N
Sbjct: 123 NLSSIFFGQQAHAVAIKMACFYDVFVG----SSLLNMYCKAGLLFEAREVFDRMP-ERNE 177
Query: 211 VIWGALLGGCKLHR 224
V W ++ G + R
Sbjct: 178 VTWATMISGYAIQR 191
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RDIISW MI+ SQN +EAL+ F EM+ PD VT VLSAC+H+G +D G
Sbjct: 475 MPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSG 534
Query: 61 REIHLYVM--QIGFDIDVYIGSALVDMYAKCGSL 92
++ +M + G V + +VD+ ++ G L
Sbjct: 535 W-LYFRMMFDEFGLLPKVEHYACMVDVLSRAGKL 567
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 200/328 (60%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ + SW MI+ +QN A+ F M+ + ++P+ VT+ ++LSACA +GAL LG +
Sbjct: 196 KTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWV 255
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + F+ +VY+ +AL+DMYAKCGS+ + +F + EKN WN++I G +HG
Sbjct: 256 HSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHG 315
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL +F M+ +V+P G+TF+SVL AC+HAGLV+EG F +M + P EHY C
Sbjct: 316 QEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYAC 375
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVD+L +AG L+ ALE I++ +P +WGALLG C +H++ +AH+A +L L+P N
Sbjct: 376 MVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPEN 435
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
GY L+ N+Y+ ++ + +R K+ + K PG + IE+ + + F + D+SHP
Sbjct: 436 IGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKT-PGCTLIEIGQVPHVFTSGDQSHPQ 494
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S IY+ L KL ++ A + E +L
Sbjct: 495 SKAIYAELDKLTGKMTEAGFQTETTTVL 522
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 2/220 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+IS MI+ ++ N + +++ F E+ +SG T+ ++ + G L I
Sbjct: 95 KDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCI 154
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + +++G + +AL +Y + + + +F + EK L WN++I G +G
Sbjct: 155 HGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLT 214
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+++F M NV PN VT S+LSAC G + G S+ V
Sbjct: 215 DAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVH-SLIKSNRFESNVYVSTA 273
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G + A EL + N V W A++ G LH
Sbjct: 274 LIDMYAKCGSITVARELFDLMP-EKNEVTWNAMISGYGLH 312
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 126/285 (44%), Gaps = 45/285 (15%)
Query: 12 MITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI 70
MI+ + +N F +++ F +M +G D T+ VL A A L L LG +I ++
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMF 130
GF V + + L+ +++KCG ++ + L+F ++R+K+L N++I G +G +++ +F
Sbjct: 61 GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120
Query: 131 DRMIYENVEPNGVTFI-----------SVLSACTHAGLVEEGRRRFLSMTCGY------- 172
++ + T + S L C H V+ G S++
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180
Query: 173 ------------SITPEVEHYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALL 217
S + + M+ ++ GL + A+ L ++ + PN V ++L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240
Query: 218 GGCKLHRNLEIAHIAVNELM--ILEPN----NSGYCTLLLNMYAE 256
C +I +++ E + +++ N N T L++MYA+
Sbjct: 241 SACA-----QIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAK 280
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++ ++W MI+ Y + +EAL F +M +S + P +T +VL AC+H G + G
Sbjct: 294 MPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEG 353
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
I H V GF+ + +VD+ + G L ++L
Sbjct: 354 DGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKAL 390
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 202/331 (61%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +SW +I+ +++ + AL +M+ P T ++V SACA +GAL+ G
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG 309
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++++ G + +IG+ L+DMYAK GS+D + VF +L + ++ WN+++ G A H
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E L F++M+ +EPN ++F+ VL+AC+H+GL++EG F M Y + P+V H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPH 428
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y VDLL + GLL+ A IR +P A +WGALLG C++H+N+E+ A L+
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL N+YA RW +V K+R MKE G++K+ P SW+E+E V+ F A+D++
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQ-PACSWVEIENAVHLFVANDET 547
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP EI ++ ++K YVP+ +L
Sbjct: 548 HPQIKEIRGKWEEISGKIKEIGYVPDTSHVL 578
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++WT +I +SQN + R+AL F +M G+ P+ T++++L A LD G
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPG 208
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ G+ VY+GSALVDMYA+CG +D + L F + K+ WN++I G A
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARK 268
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G AL + +M +N +P T+ SV SAC G +E+G+ M G + +
Sbjct: 269 GEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIG 328
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +KAG ++DA + + +P+ V W +L GC H
Sbjct: 329 N--TLLDMYAKAGSIDDA-KRVFDRLVKPDVVSWNTMLTGCAQH 369
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 5/197 (2%)
Query: 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF-DIDVYIGSALV 83
L A + ++ + PD + +L C LG ++ GR +H +++ F D + + + +V
Sbjct: 71 GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130
Query: 84 DMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+MYAKCG LD + +F ++ K++ W ++I G + + +AL +F +M+ ++PN
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHF 190
Query: 144 TFISVLSAC-THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
T S+L A + GL + + GY + V +VD+ ++ G + DA +L
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVG--SALVDMYARCGHM-DAAQLAF 247
Query: 203 SSKFQPNAVIWGALLGG 219
+ V W AL+ G
Sbjct: 248 DGMPTKSEVSWNALISG 264
>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Glycine max]
Length = 630
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 206/319 (64%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+I+W MI+ Y+QN R L+ ++EMK SG+S D VT+ V+SACA+LGA +G
Sbjct: 222 MLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIG 281
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
RE+ + + GF + ++ +ALV+MYA+CG+L R+ VF + EK++ W +II G +H
Sbjct: 282 REVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIH 341
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AL +FD M+ V P+ F+SVLSAC+HAGL + G F M Y + P EH
Sbjct: 342 GHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEH 401
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG LE+A+ LI+S K +P+ +WGALLG CK+H+N EIA +A ++ LE
Sbjct: 402 YSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVELE 461
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N GY LL N+Y + + V+++RV M+E + K PG S++E + K+ F + D S
Sbjct: 462 PTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKD-PGYSYVEYKGKMNLFYSGDLS 520
Query: 301 HPASDEIYSSLSKLDEQLK 319
HP + +IY L +L+ +K
Sbjct: 521 HPQTKQIYRMLDELESLVK 539
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 130/254 (51%), Gaps = 13/254 (5%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMK-------NSGISPDQVTMATVLSACAHLGALDL 59
I + MI+ YS N + A+ F +M+ + ++ + VT+ +++S C+ L +
Sbjct: 120 ICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTI 179
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +H ++ GF D+ + ++LV MY KCG ++ + VF ++ ++L WN++I G A
Sbjct: 180 GVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQ 239
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEV 178
+G A L ++ M V + VT + V+SAC + G G G+ P +
Sbjct: 240 NGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFL 299
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM- 237
+ +V++ ++ G L A E+ S + + V W A++GG +H + E+A +E++
Sbjct: 300 RN--ALVNMYARCGNLTRAREVFDRSG-EKSVVSWTAIIGGYGIHGHGEVALELFDEMVE 356
Query: 238 -ILEPNNSGYCTLL 250
+ P+ + + ++L
Sbjct: 357 SAVRPDKTVFVSVL 370
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
+W + S+ +Q+REAL + M S P+ T +L +CA L ++H +V
Sbjct: 21 AWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHV 80
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ G D Y S+L++ YAKC + VF ++ + C+N++I G + + A+
Sbjct: 81 IRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTI-CYNAMISGYSFNSKPLHAV 139
Query: 128 AMFDRMIYE-------NVEPNGVTFISVLSACTHA 155
+F +M E +V N VT +S++S C+ A
Sbjct: 140 CLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVA 174
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 205/351 (58%), Gaps = 25/351 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVT----------------- 43
M R+I +W ++++ YS F +AL N+M+ GI PD VT
Sbjct: 972 MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKA 1031
Query: 44 -------MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
+ +L ACA L L G+EIH ++ GF DV++ +AL+DMY+K SL +
Sbjct: 1032 FMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAH 1091
Query: 97 LVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156
VF +++ K L WN +I G A+ G EA+++F+ M V P+ +TF ++LSAC ++G
Sbjct: 1092 KVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 1151
Query: 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
L+ EG + F SM Y I P +EHY CMVDLL +AG L++A +LI + +P+A IWGAL
Sbjct: 1152 LIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGAL 1211
Query: 217 LGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276
LG C++H+NL A A L LEPNNS L++N+Y+ +RW ++ +R M G+
Sbjct: 1212 LGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVR 1271
Query: 277 KRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPEL 327
R SWI++ ++V+ F++ +K HP + +IY L +L ++K YVP++
Sbjct: 1272 NRQVW-SWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDV 1321
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 120/223 (53%), Gaps = 27/223 (12%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI++W +++ + + E L+ M+ G P+ +M +VL A + LG L++G+E H
Sbjct: 875 DIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETH 934
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV++ GFD DVY+G++L+DMY K SL + VF ++ +N+F WNS++ G + G
Sbjct: 935 GYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 994
Query: 125 EALAMFDRMIYENVEPNGVTFISVLS------------------------ACTHAGLVEE 160
+AL + ++M E ++P+ VT+ ++S AC L+++
Sbjct: 995 DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQK 1054
Query: 161 GRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
G+ LS+ G+ +V ++D+ SK+ L++A ++ R
Sbjct: 1055 GKEIHCLSIRNGF--IEDVFVATALIDMYSKSSSLKNAHKVFR 1095
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 1/194 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + + W I Q+++ ++ ++ F +M+ S + + T+ VL AC +GAL+
Sbjct: 735 MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAA 794
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH YV + G D DV + + L+ MY+K G L+ + VF + +N WNS+I A
Sbjct: 795 KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 854
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ++A ++F + +++P+ VT+ +LS G EE L G P
Sbjct: 855 GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE-VLNILQRMQGEGFKPNSSS 913
Query: 181 YGCMVDLLSKAGLL 194
++ +S+ G L
Sbjct: 914 MTSVLQAISELGFL 927
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 46/260 (17%)
Query: 4 RDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
R+ + W + + + S L+ F E+ G+ D + L C + + LG E
Sbjct: 636 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN-SIIEGLAVHG 121
IH +++ GFD+DVY+ AL++ Y +C L+++ VF ++ WN +II L
Sbjct: 696 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSAC----------------------------- 152
+ + +F +M + ++ T + VL AC
Sbjct: 756 L-QKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCN 814
Query: 153 ------THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRS 203
+ G +E RR F SM + M+ + G L DA L + S
Sbjct: 815 PLISMYSKNGKLELARRVFDSME-----NRNTSSWNSMISSYAALGFLNDAWSLFYELES 869
Query: 204 SKFQPNAVIWGALLGGCKLH 223
S +P+ V W LL G LH
Sbjct: 870 SDMKPDIVTWNCLLSGHFLH 889
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 200/332 (60%), Gaps = 23/332 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DIISW TMI E+K PD TMA VL ACA L AL+ G
Sbjct: 413 MVVKDIISWNTMI----------------GELK-----PDSRTMACVLPACASLSALERG 451
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G+ D ++ +ALVD+Y KCG L + L+F + K+L W +I G +H
Sbjct: 452 KEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMH 511
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +EA+A F+ M +EP+ V+FIS+L AC+H+GL+E+G R F M ++I P++EH
Sbjct: 512 GYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEH 571
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+ G L A E I + P+A IWGALL GC+ + ++E+A + LE
Sbjct: 572 YACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELE 631
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF-AASDK 299
P NSGY LL N+YAE +W EV ++R + + G+ K PG SWIE++ KV F + ++
Sbjct: 632 PENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKN-PGCSWIEIKGKVNLFVSGNNS 690
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S I S L K+ ++K + P+ + L
Sbjct: 691 SHPHSKNIESLLKKMRRKMKEEGHFPKTKYAL 722
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 7/255 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +MI+ Y N L + +M GI D T+ +VL CA+ G L LG+ +
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ F+ + + L+DMY+KCG LD +L VF K+ E+N+ W S+I G G +
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRS 333
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ + +M E V+ + V S+L AC +G ++ G+ + E + C
Sbjct: 334 DGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN---NMESNLFVC 390
Query: 184 --MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVNELMILE 240
++D+ +K G +E A + S+ + + W ++G K R + A L LE
Sbjct: 391 NALMDMYAKCGSME-AANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALE 449
Query: 241 PNNSGYCTLLLNMYA 255
+ +L N Y+
Sbjct: 450 RGKEIHGYILRNGYS 464
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 33/256 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT+MI Y+++ + A+ +M+ G+ D V + ++L ACA G+LD G
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG 371
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ + ++++ +AL+DMYAKCGS++ + VF + K++ WN++I L
Sbjct: 372 KDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL--- 428
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+P+ T VL AC +E G+ + GYS V
Sbjct: 429 ------------------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA 470
Query: 180 HYGCMVDLLSKAGLLEDA---LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ +VDL K G+L A ++I S + V W ++ G +H A NE+
Sbjct: 471 N--ALVDLYVKCGVLGLARLLFDMIPSK----DLVSWTVMIAGYGMHGYGNEAIATFNEM 524
Query: 237 MI--LEPNNSGYCTLL 250
+EP+ + ++L
Sbjct: 525 RDAGIEPDEVSFISIL 540
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 53/228 (23%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T ++VL CA L + G+++H + +D +G LV YA CG L VF +
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160
Query: 103 REKNLF---------------------------------------------------CWN 111
+KN++ WN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220
Query: 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171
S+I G +G L ++ +M+Y ++ + T ISVL C ++G + G + S+
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIK 279
Query: 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
S + ++D+ SK G L+ AL + + N V W +++ G
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 189/291 (64%), Gaps = 2/291 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+++W MI Y ++AL+ F EM++ G PD+VTM ++LSAC LG LD G
Sbjct: 236 VPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAG 295
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ IH + ++GF D+ V +G+AL+DMYAKCGS+ R+L VF +REK++ WNS++ GLA
Sbjct: 296 QRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAF 355
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A +++ +F M + P+ +TF+ VL AC+HAG VEEGR+ F M Y+I P +
Sbjct: 356 HGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIR 415
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL +A + I + K +PNA++W LLG C++H N+E+ A +L+ +
Sbjct: 416 HYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKM 475
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
+ SG LL N+YA W V K+R M + G+ K G S IE + K
Sbjct: 476 RHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEA-GCSLIEGDNK 525
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 121/295 (41%), Gaps = 83/295 (28%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D W TMI +Q+ A+ +++M+N + PD+ T VL AC L + +G +H
Sbjct: 77 DTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVH 136
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL--DRSLL------------------------- 97
V ++GF+ + ++ + L+ +A CG L R+L
Sbjct: 137 GRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELG 196
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-------------- 139
+F ++ K+L WN +I G A G A +FD + +V
Sbjct: 197 VARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGS 256
Query: 140 -----------------PNGVTFISVLSACTHAGLVEEGRR----------RFLSMTCGY 172
P+ VT +S+LSACT G ++ G+R R LS+ G
Sbjct: 257 NQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGN 316
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ ++D+ +K G + ALE+ + + + + W ++LGG H + E
Sbjct: 317 A----------LIDMYAKCGSIVRALEVFQGMR-EKDVSTWNSVLGGLAFHGHAE 360
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM-YAKC----GSL 92
SP + + + +C +G L ++IH ++ GF+ + SAL ++ YA G++
Sbjct: 10 SPSRQQRSQLWRSCTTIGTL---KQIHASMIVKGFNSNT---SALRELIYASSIAISGTM 63
Query: 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
+ +F + E + F WN++I G A A++++ +M V P+ TF VL AC
Sbjct: 64 AYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKAC 123
Query: 153 THAGLVEEG 161
T V+ G
Sbjct: 124 TRLCWVKMG 132
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 201/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW+T++ Y + + AL F M G+ ++ + T LSA A LG L+ G
Sbjct: 223 MPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQG 282
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + G + + +G+ALVDMY+KCGS+ + VF + +++F WNS+I GLA H
Sbjct: 283 KFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATH 342
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G H+A+ +F++ + E P +TF+ VL+AC+ GLV+EGR F M Y I E+EH
Sbjct: 343 GLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEH 402
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLLS+AGL+++A+ELI P+ V+WG +L CK H +++ N+L+ L+
Sbjct: 403 YGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELD 462
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + GY LL ++YA+ +W EV K+R M G K G S +E V++F D
Sbjct: 463 PAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSA-GWSLMEAHGIVHKFLVGDMD 521
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S +IY+ L +D +L A YVP++ ++L
Sbjct: 522 HKDSVQIYNMLCMIDRRLAEAGYVPDVSSVL 552
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEG- 116
+G +H ++ G D+Y+ +AL+ Y CG + VF +L +++ WN+++ G
Sbjct: 148 MGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGY 207
Query: 117 -------------------------LAVHGFAHE-----ALAMFDRMIYENVEPNGVTFI 146
V G+ E AL +F M+ + V+ N +
Sbjct: 208 VRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIV 267
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLLEDALELIRSSK 205
+ LSA GL+E+G +F+ + + G +VD+ SK G + A E+ +
Sbjct: 268 TALSAAAQLGLLEQG--KFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMP 325
Query: 206 FQPNAVIWGALLGGCKLH 223
++ + W +++ G H
Sbjct: 326 WR-DVFAWNSMICGLATH 342
>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01030, mitochondrial; Flags: Precursor
gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 201/324 (62%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A +++SWT + + S+N FR AL F +M+ G+ P+ TM+T+L L L G+E
Sbjct: 358 APNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKE 417
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H + ++ D Y+ +ALVDMY K G L ++ +F+ ++ K+L WN ++ G A+ G
Sbjct: 418 VHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGR 477
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E +A F M+ +EP+ +TF SVLS C ++GLV+EG + F M Y I P +EH
Sbjct: 478 GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCS 537
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL ++G L++A + I++ +P+A IWGA L CK+HR+LE+A IA L +LEP+
Sbjct: 538 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPH 597
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS +++N+Y+ ++RW +V +IR M+ + + SWI++++ V+ F A K+HP
Sbjct: 598 NSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQ-DLWSWIQIDQTVHIFYAEGKTHP 656
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
+IY L KL ++K + YVP+
Sbjct: 657 DEGDIYFELYKLVSEMKKSGYVPD 680
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI++W ++++ Y+ ++A+ M+ +G+ P +++++L A A G L LG+ IH
Sbjct: 189 DIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIH 248
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y+++ DVY+ + L+DMY K G L + +VF + KN+ WNS++ GL+
Sbjct: 249 GYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLK 308
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A A+ RM E ++P+ +T+ S+ S G E+ M + P V + +
Sbjct: 309 DAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMK-EKGVAPNVVSWTAI 367
Query: 185 VDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLG--GC--KLHRNLEIAHIAVNELM 237
SK G +AL++ ++ PNA LL GC LH E+ + + +
Sbjct: 368 FSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNL 427
Query: 238 ILEPNNSGYCTLLLNMYAE 256
I + + T L++MY +
Sbjct: 428 ICD---AYVATALVDMYGK 443
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 92/160 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W ++ ++ + +A++ F EM+ SG TM +L C++ G
Sbjct: 49 MPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEG 108
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH YV+++G + +V + ++L+ MY++ G L+ S VF ++++NL WNSI+
Sbjct: 109 RQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKL 168
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
G+ +A+ + D M ++P+ VT+ S+LS GL ++
Sbjct: 169 GYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD 208
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 59 LGREIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
LG IH +++ G D D + SA + Y +C SL + +F ++ +++ WN I+
Sbjct: 5 LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFL---- 166
G +A+ +F M + + T + +L C++ EGR R L
Sbjct: 65 LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNV 124
Query: 167 ----SMTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALELIRSSK-- 205
S+ YS ++E + ++ +K G ++DA+ L+ +
Sbjct: 125 SMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEIC 184
Query: 206 -FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+P+ V W +LL G + L IAV + M L+P+ S +LL
Sbjct: 185 GLKPDIVTWNSLLSGYA-SKGLSKDAIAVLKRMQIAGLKPSTSSISSLL 232
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 189/291 (64%), Gaps = 2/291 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+++W MI Y ++AL+ F EM++ G PD+VTM ++LSAC LG LD G
Sbjct: 201 VPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAG 260
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ IH + ++GF D+ V +G+AL+DMYAKCGS+ R+L VF +REK++ WNS++ GLA
Sbjct: 261 QRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAF 320
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG A +++ +F M + P+ +TF+ VL AC+HAG VEEGR+ F M Y+I P +
Sbjct: 321 HGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIR 380
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLL +A + I + K +PNA++W LLG C++H N+E+ A +L+ +
Sbjct: 381 HYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKM 440
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
+ SG LL N+YA W V K+R M + G+ K G S IE + K
Sbjct: 441 RHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEA-GCSLIEGDNK 490
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 121/295 (41%), Gaps = 83/295 (28%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D W TMI +Q+ A+ +++M+N + PD+ T VL AC L + +G +H
Sbjct: 42 DTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVH 101
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL--DRSLL------------------------- 97
V ++GF+ + ++ + L+ +A CG L R+L
Sbjct: 102 GRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELG 161
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-------------- 139
+F ++ K+L WN +I G A G A +FD + +V
Sbjct: 162 VARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGS 221
Query: 140 -----------------PNGVTFISVLSACTHAGLVEEGRR----------RFLSMTCGY 172
P+ VT +S+LSACT G ++ G+R R LS+ G
Sbjct: 222 NQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGN 281
Query: 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
+ ++D+ +K G + ALE+ + + + + W ++LGG H + E
Sbjct: 282 A----------LIDMYAKCGSIVRALEVFQGMR-EKDVSTWNSVLGGLAFHGHAE 325
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A G++ + +F + E + F WN++I G A A++++ +M V P+ TF
Sbjct: 23 AISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFP 82
Query: 147 SVLSACTHAGLVEEG 161
VL ACT V+ G
Sbjct: 83 FVLKACTRLCWVKMG 97
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 198/329 (60%), Gaps = 2/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW +MI Y+Q+ +AL + +N+G P +++VL+ CA L L+ G
Sbjct: 276 MRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFG 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ D ++++ SALVDMY KCG ++ + VF + E+NL WN++I G A
Sbjct: 336 RALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHI 395
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A ALA+FD MI PN +T ++V++AC+ GL ++G F +M + + P E
Sbjct: 396 GDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTE 455
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL +AG+ E A E+I+ +P+ +WGALLG CK+H E+ IA +L L
Sbjct: 456 HYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFEL 515
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P +SG LL NM A RWAE T +R MK +GI+K PG SWI + V+ F A D
Sbjct: 516 DPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKE-PGCSWITWKNVVHVFYAKDT 574
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELE 328
H + EI + L+KL +Q++ + Y+P+ +
Sbjct: 575 KHDRNSEIQALLAKLKKQMQASGYMPDTQ 603
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 126/260 (48%), Gaps = 5/260 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++I+W ++T + + E A+ ++ +G P+ V++ +ACA L LG
Sbjct: 175 MPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLG 234
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H +V+ GFD+DV + +A+VD Y KC ++ VF +R +N W S+I A H
Sbjct: 235 EQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQH 294
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
G +ALA++ EP SVL+ C AGL+ R L S I +
Sbjct: 295 GAEEDALAVYMGARNTGEEPTDFMVSSVLTTC--AGLLGLNFGRALHAVAVRSCIDANIF 352
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+VD+ K G +EDA ++ + N V W A++GG + + A +AV + MI
Sbjct: 353 VASALVDMYGKCGGVEDAEQVFLDMP-ERNLVTWNAMIGGYAHIGDAQNA-LAVFDAMIR 410
Query: 240 EPNNSGYCTLLLNMYAEVSR 259
S L+N+ SR
Sbjct: 411 SGGTSPNHITLVNVITACSR 430
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 7/216 (3%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVL--SACAHLGALDLGREI 63
++S+T I+ +Q+ + AL AF M G+ P+ T + +ACA +G +I
Sbjct: 76 VVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQI 135
Query: 64 HLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ G+ D ++ A +DMY K G L + +F ++ +N+ WN+++ + G
Sbjct: 136 HALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGR 195
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHY 181
E + + PN V+ + +AC A + G + +TCG+ + V +
Sbjct: 196 PLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSN- 254
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
MVD K A + + + N+V W +++
Sbjct: 255 -AMVDFYGKCRCAGKARAVFDGMRVR-NSVSWCSMI 288
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 201/332 (60%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++WT MI Y QN EA++ F M SG P+ T+A VLS CA L L+ G
Sbjct: 389 MSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYG 448
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
++IH ++ + + +++V MYA+ GSL + VF ++ K W S+I LA
Sbjct: 449 KQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQ 508
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+ +F+ M+ V+P+ +TF+ VLSACTH G V+EG+R F + + I PE+
Sbjct: 509 HGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMS 568
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVDLL++AGL +A E I+ +P+A+ WG+LL C++H+N ++A +A +L+ +
Sbjct: 569 HYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSI 628
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P NSG + L N+Y+ RW + KI K+ ++K G SW + +V+ F A D
Sbjct: 629 DPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKET-GFSWTHIGNRVHVFGADDV 687
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP D +Y + +K+ + +K A +VP+L+++L
Sbjct: 688 LHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVL 719
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 128/256 (50%), Gaps = 42/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SWT M+ ++ +F EA+ F +M G+SP Q T+ VLS+CA A +G
Sbjct: 122 MPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVG 181
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS----------------------------- 91
R++H +V+++G V + +++++MY KCG
Sbjct: 182 RKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHL 241
Query: 92 --LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI-YENVEPNGVTFISV 148
+D +L +F + ++ + WN++I G +G +AL F RM+ Y + P+ T SV
Sbjct: 242 GRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSV 301
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----CMVDLLSKAGLLEDALELIRSS 204
LSAC + G+V G++ Y + + + G ++ + +K+G +E+A +++ +
Sbjct: 302 LSACANLGMVSIGKQ-----VHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQA 356
Query: 205 KFQP-NAVIWGALLGG 219
N + + ALL G
Sbjct: 357 VMADLNVISFTALLEG 372
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 34/197 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP R I+SW +I Y+QN +AL F+ M + S ++PD+ T+ +VLSACA+LG + +
Sbjct: 254 MPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSI 313
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-------------DRSLLVFFKLRE-- 104
G+++H Y+++ + +AL+ MYAK GS+ D +++ F L E
Sbjct: 314 GKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGY 373
Query: 105 ------------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
+++ W ++I G +G EA+ +F MI EPN T
Sbjct: 374 VKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVA 433
Query: 147 SVLSACTHAGLVEEGRR 163
+VLS C +E G++
Sbjct: 434 AVLSVCASLACLEYGKQ 450
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134
+V+ ++L+ +YAK G L + VF ++ E++ W ++ GL G EA+ MF M+
Sbjct: 95 NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154
Query: 135 YENVEPNGVTFISVLSACTHAGLVEEGRR 163
+ + P T +VLS+C GR+
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRK 183
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 193/317 (60%), Gaps = 2/317 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ I+ WT +I+ + QN+ AL+ + EM+++ ISPDQ T TVL ACA L +L GREI
Sbjct: 585 KSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREI 644
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLAVHGF 122
H + GFD+D SALVDMYAKCG + S+ VF +L +K++ WNS+I G A +G+
Sbjct: 645 HSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGY 704
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A AL +FD M + P+ VTF+ VL+AC+HAG V EGR+ F M Y I P V+HY
Sbjct: 705 AKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYA 764
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL + G L++A E I + +PNA+IW LLG C++H + + A +L+ LEP
Sbjct: 765 CMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQ 824
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
+S LL NMYA W E +R M + I+K PG SWI + ++ F A D SH
Sbjct: 825 SSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQK-IPGCSWIVVGQETNLFVAGDISHS 883
Query: 303 ASDEIYSSLSKLDEQLK 319
+ DEI +L L +K
Sbjct: 884 SYDEISKALKHLTALIK 900
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 157/310 (50%), Gaps = 8/310 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R++++W MI+ +++ + EAL F++M G+ + T+A+VLSA A L AL+ G
Sbjct: 177 IPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHG 236
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + ++ GF+ +Y+ S+L++MY KC D + VF + +KN+ WN+++ + +
Sbjct: 237 LLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQN 296
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF + +F MI + P+ T+ S+LS C +E G R+ S T +
Sbjct: 297 GFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVG-RQLHSAIIKKRFTSNLFV 355
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
++D+ +KAG L++A + ++ + + W A++ G + +E ++ MIL+
Sbjct: 356 NNALIDMYAKAGALKEAGKHFEHMTYRDH-ISWNAIIVG-YVQEEVEAGAFSLFRRMILD 413
Query: 241 ---PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRC-PGSSWIEMERKVYQFAA 296
P+ + +L+ + + +LG+E GSS I+M K
Sbjct: 414 GIVPDEVSLAS-ILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKD 472
Query: 297 SDKSHPASDE 306
+ K++ + E
Sbjct: 473 AHKTYSSMPE 482
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 26/254 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD ISW +I Y Q + A F M GI PD+V++A++LSAC ++ L+ G
Sbjct: 379 MTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAG 438
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ H +++G + +++ GS+L+DMY+KCG + + + + E+++ N++I G A+
Sbjct: 439 QQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK 498
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFLSMT 169
E++ + M ++P+ +TF S++ C H +V+ G +
Sbjct: 499 N-TKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRG------LL 551
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
CG ++ + + L DA L + V+W AL+ G H E +
Sbjct: 552 CGSEFLGT-----SLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISG---HIQNECS 603
Query: 230 HIAVNELMILEPNN 243
+A+N + NN
Sbjct: 604 DVALNLYREMRDNN 617
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85
L + NSG SPDQ T A LSACA L L LGR +H V++ G + + AL+ +
Sbjct: 32 LQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHL 91
Query: 86 YAKCGSLD--RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
YAKC SL R++ + W ++I G G HEAL +FD+M V P+ V
Sbjct: 92 YAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQV 150
Query: 144 TFISVLSACTHAGLVEEGRRRFLSM 168
++VL+A G +++ + F M
Sbjct: 151 ALVTVLNAYISLGKLDDACQLFQQM 175
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 44/222 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
P +SWT +I+ Y Q EAL F++M+NS + PDQV + TVL+A LG LD
Sbjct: 110 FPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDA 168
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++ Q+ I +N+ WN +I G A
Sbjct: 169 CQL---FQQMPIPI------------------------------RNVVAWNVMISGHAKT 195
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EALA F +M V+ + T SVLSA + G + ++I E
Sbjct: 196 AHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGL-----LVHAHAIKQGFES 250
Query: 181 Y----GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218
++++ K + +DA ++ + Q N ++W A+LG
Sbjct: 251 SIYVASSLINMYGKCQMPDDARQVFDAIS-QKNMIVWNAMLG 291
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 188/302 (62%), Gaps = 1/302 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P RD+ SW MIT Y+QN EAL ++M G+ PD T+ +VL+AC+ L +L G
Sbjct: 259 IPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG 318
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+ H+ V++ G++ + I +AL+ MY KCGS+ S L F ++ ++ WN++I A H
Sbjct: 319 RKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARH 378
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF ALA F M VEP+G+TF+S+LSAC HAG V E F SM Y I EH
Sbjct: 379 GFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEH 438
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ C+VD+LS+ G +E A ++I+ F+ + IWGALL C +H N+++ +A +++ LE
Sbjct: 439 FACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELE 498
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG +L N+YA W EVT++R M+E G++K+ P SW+E++ KV+ F D S
Sbjct: 499 PQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQ-PAYSWMEIDNKVHFFLGDDAS 557
Query: 301 HP 302
HP
Sbjct: 558 HP 559
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 142/316 (44%), Gaps = 50/316 (15%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++IS+T M+ Y++ + +A FN M + V+ ++S G D
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNV----VSWTVMISGYVENGKFDEA 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + D ++ +A++ Y K G D++ ++F ++ ++L WN++I G A +
Sbjct: 222 ENLFEQMP----DKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQN 277
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYS------ 173
G EAL + +M+ ++P+ T ISVL+AC+ ++EGR+ L + GY
Sbjct: 278 GSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISIC 337
Query: 174 ---IT--------------------PEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
IT P+V + M+ ++ G + AL +RS++ +
Sbjct: 338 NALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVE 397
Query: 208 PNAVIWGALLGGC----KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263
P+ + + +LL C K+H +L + + I+ C + + +SR +V
Sbjct: 398 PDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDI-----LSRGGQV 452
Query: 264 TKIRVAMKELGIEKRC 279
K ++E+ E C
Sbjct: 453 EKAYKIIQEMPFEADC 468
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 33/188 (17%)
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R+ H +++ DVY + + A+ G++ + VF ++ ++ WNSII G
Sbjct: 30 FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYW 89
Query: 119 VHGFAHEALAMFDRMIYENV---------------------------EPNGVTFISVLSA 151
+G E+ +F M +NV + N ++ +++S
Sbjct: 90 KNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISG 149
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
VEE R F M I+ Y MVD +K G +E A L Q N V
Sbjct: 150 LVRYDRVEEASRLFEEMPRRNVIS-----YTAMVDGYAKIGEIEQARALFNCMP-QKNVV 203
Query: 212 IWGALLGG 219
W ++ G
Sbjct: 204 SWTVMISG 211
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 195/328 (59%), Gaps = 2/328 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDLGREI 63
D + W MI Y+Q+ + ++ALD + M ++ ++P Q T TV+ CA L AL GR I
Sbjct: 202 DSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAI 261
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V FD ++ + +ALV MY KCG LD +L VF ++ K+ WN+II A HG +
Sbjct: 262 HARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHS 321
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL ++ M + V+P VTF+ +LSAC+H GLV +G F M + I P V H+GC
Sbjct: 322 DQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGC 381
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
++DLL + G L +A +++S Q NAV W +LLG CK H +L+ A ++++ P
Sbjct: 382 IIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWT 441
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
SG LL N+YA RW +V KIR M G+ K+ PG SWIE+ V++F + D+SHP
Sbjct: 442 SGGYVLLSNIYAAAGRWKDVEKIRKIMAARGV-KKSPGKSWIEIGDVVHEFVSGDRSHPQ 500
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+EIY L K+ E++K YVP+ ++
Sbjct: 501 GEEIYVELGKMVEEMKGLGYVPDTSSVF 528
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 135/255 (52%), Gaps = 10/255 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
++ ++W M+T Y + + REAL+ F EM ++ PD+ + + + AC++L L+ GR
Sbjct: 95 KNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGR 154
Query: 62 EIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EIH + + G ++ DV +G+AL++MY+KCG L+ + VF +R + + CWN++I A
Sbjct: 155 EIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYA 214
Query: 119 VHGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
HG +AL ++ M ++ P TF++V+ C +++G R + +
Sbjct: 215 QHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQG-RAIHARVRATNFDAN 273
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ +V + K G L++AL++ S K + + + W ++ H + + A + E+
Sbjct: 274 LLVSNALVHMYGKCGCLDEALDVFHSMKLK-DEISWNTIISSYAYHGHSDQALLLYQEMD 332
Query: 238 I--LEPNNSGYCTLL 250
+ ++P + LL
Sbjct: 333 LQGVKPTEVTFVGLL 347
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 9/254 (3%)
Query: 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA--LDLGREIHLYVMQI 70
+ +S N EAL F M SG PD+VT + +L+A A +GA +D GREIH Y
Sbjct: 1 MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60
Query: 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMF 130
G +V +G+A++ MY KCG LD + F +L+ KN WN+++ + G EAL +F
Sbjct: 61 GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120
Query: 131 DRMI--YENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
M + P+ +F + AC++ +E+GR + G + +V ++++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA---HIAVNELMILEPNNS 244
SK G LE+A ++ S + ++V W A++ H + A + ++++ L P
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240
Query: 245 GYCTLLLNMYAEVS 258
+ T ++++ AE+S
Sbjct: 241 TFVT-VIDVCAELS 253
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D ISW T+I+ Y+ + +AL + EM G+ P +VT +LSAC+H G + G
Sbjct: 300 MKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADG 359
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
+ + Y MQ I + ++D+ + G L + LV + + N W S++
Sbjct: 360 LD-YFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 418
Query: 118 AVHGFAHEALAMFDRMI 134
HG + D+++
Sbjct: 419 KTHGDLKRGVRAADQVV 435
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 208/327 (63%), Gaps = 3/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ W ++I ++Q+ A++ F MK SG +Q T+ +VL AC + L++GR++H
Sbjct: 236 DLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVH 295
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+V++ +D D+ + +AL+DMY KCG L + +F ++ ++++ W+++I GLA +G +
Sbjct: 296 AHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSV 353
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
EAL +FD M E PN +T + VL AC+HAGLVE+G F SM + I PE EH CM
Sbjct: 354 EALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCM 413
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
VDLL +AG L++A++ I KF+P++VIW LLG C++H+N +A A E++ LEP +
Sbjct: 414 VDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQ 473
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA++ +W+ K M++ G++K PG SWIE+ + V+ F A + SHP S
Sbjct: 474 GARILLSNIYADLRQWSNAEKSWKTMRDQGVKKE-PGRSWIELGKLVHVFIAGELSHPCS 532
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
D I L++L + K YVP+ E +L
Sbjct: 533 DRIVQELNRLIRRAKDLGYVPQTEFVL 559
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 12/247 (4%)
Query: 1 MPARDIISWTTMITCYSQNK-QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP R+++SWTT++ + + +EAL EM+ G++ + T ++VL AC G L
Sbjct: 133 MPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVL-- 190
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+H ++++G D DV++ S+L+D Y K G LD VF ++ +L WNSII G A
Sbjct: 191 -AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQ 249
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A+ +F RM N T SVL ACT ++E GR+ + ++
Sbjct: 250 SGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHV---LKYDRDLI 306
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+ ++D+ K G L DA L S + + W ++ G + + V +LM
Sbjct: 307 LHNALLDMYCKCGCLLDADALF-SRMHDRDVISWSTMISGLA-QNGRSVEALKVFDLMKA 364
Query: 240 E---PNN 243
E PNN
Sbjct: 365 EGPTPNN 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 22 FREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV------MQIGFDID 75
F AL ++ +G+ D V++ ++ C G + GR IH +V
Sbjct: 47 FTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGS 106
Query: 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA-VHGFAHEALAMFDRMI 134
+++ ++LV MYAK G LD +L +F + ++N+ W +++ LA G EAL M
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMR 166
Query: 135 YENVEPNGVTFISVLSACTHAGLV 158
+ V N TF SVL AC G++
Sbjct: 167 RDGVAANSYTFSSVLGACGTPGVL 190
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW+TMI+ +QN + EAL F+ MK G +P+ +TM VL AC+H G ++ G
Sbjct: 331 MHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDG 390
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
+ ++ G + + +VD+ + G LD ++ +++ E + W +++
Sbjct: 391 WHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACR 450
Query: 119 VH 120
+H
Sbjct: 451 MH 452
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 206/337 (61%), Gaps = 9/337 (2%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAH-LGALDLG 60
R I W MI+ Y++N +AL F EM K +G+ P+ TMA+V+ AC H L A+ G
Sbjct: 278 GRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKG 337
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y ++ D+ +GSALVDMYAKCG L+ S VF ++ KN+ WN +I +H
Sbjct: 338 KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMH 397
Query: 121 GFAHEALAMFDRMIYE-----NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G EAL +F M+ E +PN VTFI+V +AC+H+GL+ EG F M + +
Sbjct: 398 GKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVE 457
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV-IWGALLGGCKLHRNLEIAHIAVN 234
P +HY C+VDLL +AG LE+A EL+ + + + V W +LLG C++H+N+E+ +A
Sbjct: 458 PTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAK 517
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
L+ LEPN + + LL N+Y+ W + ++R M+++G++K PG SWIE +V++F
Sbjct: 518 NLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKE-PGCSWIEFRDEVHKF 576
Query: 295 AASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
A D SHP S++++ L L E+++ YVP+ +L
Sbjct: 577 MAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVL 613
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 152/331 (45%), Gaps = 29/331 (8%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW TMI+ +SQ+ +F EAL F M G+ D VT+A+VL AC+HL LD+G+EI
Sbjct: 177 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEI 236
Query: 64 HLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H YV++ I + ++GSALVDMY C ++ VF + + + WN++I G A +G
Sbjct: 237 HAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGL 296
Query: 123 AHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F MI + PN T SV+ AC H+ + + + ++
Sbjct: 297 DEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVG 356
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
+VD+ +K G L + + N + W L+ C +H E A LE
Sbjct: 357 SALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEA---------LE- 405
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWI-EMERKVYQFAASDKS 300
L NM AE R E V + + C S I E Y+
Sbjct: 406 -------LFKNMVAEAGRGGEAKPNEVTF--ITVFAACSHSGLISEGLNLFYRMKHDHGV 456
Query: 301 HPASD------EIYSSLSKLDEQLKLASYVP 325
P SD ++ +L+E +L + +P
Sbjct: 457 EPTSDHYACVVDLLGRAGQLEEAYELVNTMP 487
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 113/280 (40%), Gaps = 66/280 (23%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P+R SW + +++ FREA+ + EM SG PD VL A + L L G
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 62 EIHLYVMQIGF-DIDVYIGSALVDMYAKCGSL--------------------DRSLLVFF 100
+IH ++ G+ V + + LV+MY KCG + D S +F
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH------ 154
++++ WN++I + EALA F M+ E VE +GVT SVL AC+H
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232
Query: 155 ------------------------------AGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
VE GRR F + + +E + M
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVF-----DHILGRRIELWNAM 287
Query: 185 VDLLSKAGLLEDAL----ELIRSSKFQPNAVIWGALLGGC 220
+ ++ GL E AL E+I+ + PN +++ C
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 327
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-----KNSGISPDQVTMATVLSACAHLG 55
MP +++I+W +I + + EAL+ F M + P++VT TV +AC+H G
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438
Query: 56 ALDLGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRS--LLVFFKLREKNLFC 109
+ G + Y M+ + D Y + +VD+ + G L+ + L+ +
Sbjct: 439 LISEGLNL-FYRMKHDHGVEPTSDHY--ACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA 495
Query: 110 WNSIIEGLAVH 120
W+S++ +H
Sbjct: 496 WSSLLGACRIH 506
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 200/319 (62%), Gaps = 2/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ +SW T+I Y +N+Q + L+ FN + SG +P++ T ++VL ACA + +LD G
Sbjct: 408 IPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKG 467
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++++G D+++G+AL DMYAKCG + S VF ++ EKN W +I+GLA
Sbjct: 468 MNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAES 527
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GFA E+L +F+ M V PN + +SVL AC+H GLV++G F SM Y I P+ +
Sbjct: 528 GFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGK 587
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLLS++G L +A E IR+ FQP A W ALL GCK +++ +IA +L L
Sbjct: 588 HYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQL 647
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NNS LL N+YA RW +V+ IR M+E G+ K+ G SW+E+ +V+ F + D
Sbjct: 648 AENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGL-KKSGGCSWVEVRNQVHSFYSEDG 706
Query: 300 SHPASDEIYSSLSKLDEQL 318
SH S+EIY +L L ++
Sbjct: 707 SHSQSNEIYGTLQLLRSEM 725
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 130/284 (45%), Gaps = 50/284 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW+ MI YSQ+ EAL F++M G P+ A LSA A L AL G
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAG 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH +V +IG D DV+IGS+L+D+Y KCG D LVF + EKN+ CWNS++ G +++
Sbjct: 336 INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSIN 395
Query: 121 GFA-------------------------------HEALAMFDRMIYENVEPNGVTFISVL 149
G + L +F+ ++ PN TF SVL
Sbjct: 396 GRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVL 455
Query: 150 SACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
AC +++G + + + Y I + D+ +K G + + ++
Sbjct: 456 CACASIASLDKGMNVHGKIIKLGIQYDIFVGT----ALTDMYAKCGDIGSSKQVFERMP- 510
Query: 207 QPNAVIWGALLGGCK----------LHRNLE-IAHIAVNELMIL 239
+ N + W ++ G L +E + +A NELM+L
Sbjct: 511 EKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLL 554
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 51/262 (19%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++SWT I+ + +N EAL F + SG+ P+ VT +V+ AC LG LG
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 62 EIHLYVMQIGFD-------------------------------IDVYIGSALVDMYAKCG 90
I V++ GF+ DV +A++D Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
L + +F ++ E+N W+++I + G+A EAL +F +M+ E +PN F
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCF----- 319
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELI 201
ACT + L +++ G +I V G ++DL K G +D L+
Sbjct: 320 ACTLSALAS-----LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDG-RLV 373
Query: 202 RSSKFQPNAVIWGALLGGCKLH 223
+ N V W +++GG ++
Sbjct: 374 FDLILEKNVVCWNSMVGGYSIN 395
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 18/191 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
SAL+ K G ++ S+ F + +N+ W + I G +G EAL +F R++ V
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
PN VTF SV+ AC G G G + EHY + + L L ++
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMS-----ILGLVVKAGFEHYLSVSNSLITLSLRMGEID 236
Query: 200 LIR---SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL----------MILEPNNSGY 246
L R + + V W A+L +L A +E+ MI + SGY
Sbjct: 237 LARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGY 296
Query: 247 CTLLLNMYAEV 257
L +++++
Sbjct: 297 AEEALKLFSKM 307
>gi|5262157|emb|CAB45786.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7267600|emb|CAB80912.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 500
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 201/324 (62%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A +++SWT + + S+N FR AL F +M+ G+ P+ TM+T+L L L G+E
Sbjct: 90 APNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKE 149
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H + ++ D Y+ +ALVDMY K G L ++ +F+ ++ K+L WN ++ G A+ G
Sbjct: 150 VHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGR 209
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E +A F M+ +EP+ +TF SVLS C ++GLV+EG + F M Y I P +EH
Sbjct: 210 GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCS 269
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL ++G L++A + I++ +P+A IWGA L CK+HR+LE+A IA L +LEP+
Sbjct: 270 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPH 329
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS +++N+Y+ ++RW +V +IR M+ + + SWI++++ V+ F A K+HP
Sbjct: 330 NSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQ-DLWSWIQIDQTVHIFYAEGKTHP 388
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
+IY L KL ++K + YVP+
Sbjct: 389 DEGDIYFELYKLVSEMKKSGYVPD 412
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MY K G L + +VF + KN+ WNS++ GL+ +A A+ RM E ++P+ +T
Sbjct: 1 MYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAIT 60
Query: 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---I 201
+ S+ S G E+ M + P V + + SK G +AL++ +
Sbjct: 61 WNSLASGYATLGKPEKALDVIGKMK-EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKM 119
Query: 202 RSSKFQPNAVIWGALLG--GC--KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
+ PNA LL GC LH E+ + + +I + + T L++MY +
Sbjct: 120 QEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICD---AYVATALVDMYGK 175
>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
Length = 352
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 184/264 (69%), Gaps = 1/264 (0%)
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
E+H +V ++D+ +G+AL+DMYAKCG ++ + VF ++ EK++ W+S+I GLA HG
Sbjct: 1 EVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG 60
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
HE+L++F +MI E ++PNGVTF+ VL ACTH GLV EG++ F SM + I P VEHY
Sbjct: 61 LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHY 120
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL ++G +E+A +LIRS F+P+ +IW ALLG C++H+N+EIA A+ +L +L+P
Sbjct: 121 GCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDP 180
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
G+ LL N+YA+ + W V ++R ++ I+ R PG S IE + K+++F + D+ H
Sbjct: 181 LGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQ-RIPGRSSIEWDEKIHEFVSGDRLH 239
Query: 302 PASDEIYSSLSKLDEQLKLASYVP 325
P S EIY L ++ ++LK A Y P
Sbjct: 240 PRSKEIYRVLEEMMDRLKQAGYKP 263
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+ +W++MI + + E+L F++M + G+ P+ VT VL AC H+G + G
Sbjct: 41 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 100
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
++ + ++ G + V +VD+ + G ++ + + + E + W +++
Sbjct: 101 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 160
Query: 119 VHG---FAHEALA 128
+H A EA+A
Sbjct: 161 IHKNVEIAEEAMA 173
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 208/334 (62%), Gaps = 7/334 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SW ++I+ Y + +AL+ F M G PD+VT+ +VL+AC + AL LG
Sbjct: 289 LRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLG 348
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ YV++ G+ ++V +G+AL+ MYA CGSL + VF ++ EKNL ++ G +H
Sbjct: 349 ATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIH 408
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+++F M+ + V P+ F +VLSAC+H+GLV+EG+ F MT YS+ P H
Sbjct: 409 GRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTH 468
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++A +I + K +PN +W ALL C+LHRN+++A I+ +L L
Sbjct: 469 YSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELN 528
Query: 241 PNN-SGYCTLLLNMYAEVSRWAEVTKIR--VAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
P+ SGY L N+YA RW +V +R VA + L ++ P S++E+ + V+QF
Sbjct: 529 PDGVSGY-VCLSNIYAAERRWEDVENVRALVAKRRL---RKPPSYSFVELNKMVHQFFVG 584
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SH SD+IY+ L L+EQLK A Y P+ +L
Sbjct: 585 DTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVL 618
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 3/164 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ SW TM++ + +N + R A + F +M+ G D+ T+ +LSAC + L +G
Sbjct: 185 MLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVG 244
Query: 61 REIHLYVMQIGFDIDV---YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+EIH YV++ G V ++ ++++DMY C S+ + +F LR K++ WNS+I G
Sbjct: 245 KEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGY 304
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161
G A +AL +F RM+ P+ VT ISVL+AC + G
Sbjct: 305 EKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLG 348
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +MI Y+ N AL + +M + G PD T VL AC L ++GR++H V+
Sbjct: 92 WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVV 151
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
G + DVY+G++++ MY K G ++ + +VF ++ ++L WN+++ G +G A A
Sbjct: 152 VGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFE 211
Query: 129 MFDRMIYENVEPNGVTFISVLSAC 152
+F M + + T +++LSAC
Sbjct: 212 VFGDMRRDGFVGDRTTLLALLSAC 235
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLV 98
D + T+L + + +L ++H +V G + Y+ + L YA CG + + +
Sbjct: 21 DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80
Query: 99 FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158
F ++ KN F WNS+I G A + AL ++ +M++ +P+ T+ VL AC L
Sbjct: 81 FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140
Query: 159 EEGRR 163
E GR+
Sbjct: 141 EMGRK 145
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 207/327 (63%), Gaps = 5/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALDLGR 61
R++++WT MI Y+Q +AL F+EM K ++P+ T++ +L ACAHL +L +G+
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGK 532
Query: 62 EIHLYVMQIG-FDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH YV + ++ VY + + L+DMY+KCG +D + VF + ++N W S++ G +
Sbjct: 533 QIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGM 592
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +FD+M P+ ++F+ +L AC+H+G+V++G F M Y + +
Sbjct: 593 HGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQ 652
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C++DLL+++G L+ A + I+ +P+A IW ALL C++H N+E+A A+N+L+ +
Sbjct: 653 HYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSM 712
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N G TL+ N+YA RW +V +IR MK+ GI+KR PG SW++ ++ F D+
Sbjct: 713 KAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKR-PGCSWVQGKKGTASFFVGDR 771
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP S EIYS L +L ++K+ YVPE
Sbjct: 772 SHPLSPEIYSLLERLIGRIKVMGYVPE 798
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 18/236 (7%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+I+W+ +I Y+Q +EALD F +M G P+ VT+ ++LSACA LGAL G E H
Sbjct: 359 DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETH 418
Query: 65 LYVMQ------------IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL--REKNLFCW 110
Y ++ G D+ + +AL+DMY+KC S + +F + RE+N+ W
Sbjct: 419 AYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTW 478
Query: 111 NSIIEGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
+I G A +G +++AL +F MI + V PN T +L AC H + G++ +
Sbjct: 479 TVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYV 538
Query: 169 TCGYSITPEVEHYG-CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
T + V C++D+ SK G ++ A + S + N V W +++ G +H
Sbjct: 539 TRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 53/268 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHLGALD 58
D+ISW +++ + + R ALD F+EM K + D +++ +L ACA L AL
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALP 276
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF----FK------------- 101
+EIH Y ++ G D ++ +AL+D YAKCGS+ ++ VF FK
Sbjct: 277 QTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYT 336
Query: 102 --------------LREKNL----FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+R++N+ W+++I G A G+ EAL F +MI EPN V
Sbjct: 337 QSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSV 396
Query: 144 TFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPEVEH---YGCMVDLLSKAG 192
T IS+LSAC G + +G ++ LS+ + + E + ++D+ SK
Sbjct: 397 TIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCR 456
Query: 193 LLEDALELIRS-SKFQPNAVIWGALLGG 219
+ A + S + + N V W ++GG
Sbjct: 457 SFKAARTIFNSIPRRERNVVTWTVMIGG 484
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 11/220 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ + + + A+ M +G PD T+ L AC L + G H +
Sbjct: 117 WNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLIC 176
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHE 125
GF+ +V++ +ALV MY++ GSL+ + LVF ++ K ++ WNSI+
Sbjct: 177 CNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236
Query: 126 ALAMFDRM---IYE---NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
AL +F M ++E N + ++ +++L AC + + + S +
Sbjct: 237 ALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQ-TKEIHSYAIRNGTFADAF 295
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D +K G ++DA+ + +F+ + V W A++ G
Sbjct: 296 VCNALIDTYAKCGSMKDAVNVFNVMEFK-DVVSWNAMVTG 334
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ +SWT+M++ Y + + +EALD F++M+ +G PD ++ +L AC+H G +D G
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634
Query: 61 REIHLYVMQIGFDIDVYIGSA-----LVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSII 114
+ + +M+ + + I SA ++D+ A+ G LD++ ++ E + W +++
Sbjct: 635 LD-YFDIMRSDYGV---IASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALL 690
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSA 151
VH A ++++ E +G T IS + A
Sbjct: 691 SACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYA 728
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+G+ +V Y CG+ +L V ++ WN ++ G A+ + RM+
Sbjct: 85 LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
+P+ T L AC G F + C V +V + S++G LEDA
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSG-SAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 205/324 (63%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ +W+ MI Y++N F +A+D F MK G+ ++ M +V+S+CAHLGAL+ G
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ YV++ +++ +G+ALVDM+ +CG +++++ VF L E + W+SII+GLAVH
Sbjct: 269 ERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVH 328
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH+A+ F +MI P VTF +VLSAC+H GLVE+G + +M + I P +EH
Sbjct: 329 GHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEH 388
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+L +AG L +A I +PNA I GALLG CK+++N E+A N L+ ++
Sbjct: 389 YGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVK 448
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA-ASDK 299
P +SGY LL N+YA +W ++ +R MKE + K+ PG S IE++ K+ +F D+
Sbjct: 449 PEHSGYYVLLSNIYACAGQWDKIESLRDMMKE-KLVKKPPGWSLIEIDGKINKFTMGDDQ 507
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
HP +I ++ +++L Y
Sbjct: 508 KHPEMGKIRRKWEEILGKIRLIGY 531
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 118/250 (47%), Gaps = 33/250 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + +I C+S + +A + +M S I PD +T ++ A + + + +G + H
Sbjct: 81 NLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTH 140
Query: 65 LYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLD 93
+++ GF DVY+ ++LV MYA KCG ++
Sbjct: 141 SQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVE 200
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ +NLF W+ +I G A + +A+ +F+ M E V N +SV+S+C
Sbjct: 201 NAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCA 260
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G R + + + +T + +VD+ + G +E A+ + + +++ W
Sbjct: 261 HLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSW 318
Query: 214 GALLGGCKLH 223
+++ G +H
Sbjct: 319 SSIIKGLAVH 328
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDR--SLL-----VF 99
+L +C+ L + IH ++++ DV++ S L+ + + ++ +LL +F
Sbjct: 18 LLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIF 74
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
+++ NLF +N +I + +A + +M+ + P+ +TF ++ A + V
Sbjct: 75 SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G + S + +V +V + + G + A + F+ + V W +++ G
Sbjct: 135 VGEQTH-SQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAG 192
Query: 220 -CKL--------------HRNLEIAHIAVN 234
CK HRNL I +N
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMIN 222
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 199/319 (62%), Gaps = 2/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ SW T+J Y +N+Q + L+ FN + SG +P++ T ++VL ACA + +LD G
Sbjct: 408 IPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKG 467
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H ++++G D+++G+AL DMYAKCG + S VF ++ EKN W +I+GLA
Sbjct: 468 MNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAES 527
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GFA E+L +F+ M V PN + +SVL AC+H GLV++G F SM Y I P+ +
Sbjct: 528 GFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGK 587
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLLS++G L +A E IR+ FQP A W ALL GCK +++ +IA +L L
Sbjct: 588 HYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQL 647
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
NNS LL N+YA RW +V+ IR M+E G+ K+ G SW+E+ +V+ F + D
Sbjct: 648 AENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGL-KKSGGCSWVEVRNQVHSFYSEDG 706
Query: 300 SHPASDEIYSSLSKLDEQL 318
SH SDEIY +L L ++
Sbjct: 707 SHSQSDEIYGTLQLLRSEM 725
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 130/284 (45%), Gaps = 50/284 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ ISW+ MI YSQ+ EAL F++M G P+ A LSA A L AL G
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAG 335
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH +V +IG D DV+IGS+L+D+Y KCG D LVF + EKN+ CWNS++ G +++
Sbjct: 336 INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSIN 395
Query: 121 GFA-------------------------------HEALAMFDRMIYENVEPNGVTFISVL 149
G + L +F+ ++ PN TF SVL
Sbjct: 396 GRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVL 455
Query: 150 SACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
AC +++G + + + Y I + D+ +K G + + ++
Sbjct: 456 CACASIASLDKGMNVHGKIIKLGIQYDIFVGT----ALTDMYAKCGDIGSSKQVFERMP- 510
Query: 207 QPNAVIWGALLGGCK----------LHRNLE-IAHIAVNELMIL 239
+ N + W ++ G L +E + +A NELM+L
Sbjct: 511 EKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLL 554
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 126/289 (43%), Gaps = 53/289 (18%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P ++++SWT I+ + +N EAL F + SG+ P+ VT +V+ AC LG LG
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 62 EIHLYVMQIGFD-------------------------------IDVYIGSALVDMYAKCG 90
I V++ GF+ DV +A++D Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
L + +F ++ E+N W+++I + G+A EAL +F +M+ E +PN F
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCF----- 319
Query: 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG---------CMVDLLSKAGLLEDALELI 201
ACT + L +++ G +I V G ++DL K G +D L+
Sbjct: 320 ACTLSALAS-----LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDG-RLV 373
Query: 202 RSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL 250
+ N V W +++GG + N + +I E N+ + T+J
Sbjct: 374 FDLILEKNVVCWNSMVGGYSI--NGRLEEXEELFELIPEKNDXSWGTIJ 420
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 18/191 (9%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
SAL+ K G ++ S+ F + +N+ W + I G +G EAL +F R++ V
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
PN VTF SV+ AC G G G + EHY + + L L ++
Sbjct: 182 PNDVTFTSVVRACGELGDFGLGMS-----ILGLVVKAGFEHYLSVSNSLITLSLRMGEID 236
Query: 200 LIR---SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL----------MILEPNNSGY 246
L R + + V W A+L +L A +E+ MI + SGY
Sbjct: 237 LARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGY 296
Query: 247 CTLLLNMYAEV 257
L +++++
Sbjct: 297 AEEALKLFSKM 307
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 203/325 (62%), Gaps = 2/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+ + WT+MI+ Y+Q Q +EA+ F +M+ +G+ D T++TV+S+C +GALDLG
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLG 316
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y G D+ + ++L+DMY+KCG + ++ +F + +++ F W II G A +
Sbjct: 317 RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAAN 376
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G + EAL +F +M E V PN +TF+ VL++C+H GLVE+G R F M+ Y I P +E
Sbjct: 377 GLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIE 436
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +A LL +A + I+ P+AV+W +LL C+ + +A + +L
Sbjct: 437 HYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVL 496
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN G LL +YA SRW + K+R + G + + PG S+IE++ V++F A D+
Sbjct: 497 EPNKCGGDVLLSTVYATTSRWVDANKVRTGIYS-GRKTKQPGCSFIEVDGCVHEFFAGDE 555
Query: 300 SHPASDEIYSSLSKLDEQLKLASYV 324
SH ++ IYS+L ++E L S++
Sbjct: 556 SHFETEAIYSTLLGINELLVAESFL 580
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 7/217 (3%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A D +SW T+I Y +AL AF++M + D VT+ L ACA + +G+
Sbjct: 158 ASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKL 217
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ GF+I+ Y+GS+L+ MYAKCG ++ + +F + ++N CW S+I G G
Sbjct: 218 CHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQ 277
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPEVEHY 181
+ EA+ +F M V+ + T +V+S+C G ++ G R++ C + + ++
Sbjct: 278 SKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLG--RYVHAYCDIHGLGKDISVK 335
Query: 182 GCMVDLLSKAGLLEDALE----LIRSSKFQPNAVIWG 214
++D+ SK G ++ A + +++ F +I G
Sbjct: 336 NSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMG 372
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 104/212 (49%), Gaps = 16/212 (7%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG--SLDRSLL 97
D +++ LS A + ++ +G ++H +++G D ++ + L++MY+ C S RS+L
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
+ WN+II G G ++AL F +M V + VT ++ L AC +
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211
Query: 158 VEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGAL 216
++ G+ L +T G+ I + ++ + +K G +EDA + + NAV W ++
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMG--SSLISMYAKCGQVEDARRIFDGMPDR-NAVCWTSM 268
Query: 217 LGG----------CKLHRNLEIAHIAVNELMI 238
+ G KL R+++IA + V++ I
Sbjct: 269 ISGYTQLGQSKEAIKLFRDMQIAGVKVDDATI 300
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 207/330 (62%), Gaps = 3/330 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W+ + Y++N + R+A+ + M G+ P+ T +VL ACA + AL GR I
Sbjct: 226 KNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRI 285
Query: 64 H--LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
H V+ G + DVY+ +ALV+MY+KCG+L + +F K+ +L WNS+I A HG
Sbjct: 286 HERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHG 345
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
+AL +F+RM E ++P +TF SVL AC+HAG++++GR+ F+S + I PE EH+
Sbjct: 346 QTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHF 405
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
GCMVDLL +AG + D+ +L+ F+P+ V W A LG C+ +RN++ A A L L+P
Sbjct: 406 GCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDP 465
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
LL NMYA+ RW++V ++R AM +L + + G SWIE++ +V++F + D H
Sbjct: 466 RKRAPYVLLSNMYAKAGRWSDVARMRQAM-QLFMTVKEAGRSWIEVKDRVHEFISGDLDH 524
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EI++ L +L + +K A YVP+ E +L
Sbjct: 525 PRIGEIHAELQRLTKLMKEAGYVPDTEMVL 554
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 129/241 (53%), Gaps = 3/241 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W+ M+ Y++N REAL F +M G++P++VT+ + L ACA LG L G
Sbjct: 122 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSG 181
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H V G V +G+ALV++Y KCG ++ ++ F ++ EKN+ W++I A +
Sbjct: 182 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARN 241
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+A+ + RM E + PN TF+SVL AC +++GRR + G + +V
Sbjct: 242 DRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVY 301
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+V++ SK G L A ++ + V+W +L+ H E A + + E M L
Sbjct: 302 VLTALVNMYSKCGNLALAGDMF-DKIAHLDLVLWNSLIATNAQHGQTEKA-LELFERMRL 359
Query: 240 E 240
E
Sbjct: 360 E 360
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 121/254 (47%), Gaps = 8/254 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP DI+SW +I Y N+ F F M GI+P +V ++ LSAC + +G
Sbjct: 21 MPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIG 80
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R I L ++ G + + + +ALV MY K G + VF ++ +++ W++++ A +
Sbjct: 81 RSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARN 140
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F +M + V PN VT +S L AC G + G + I V
Sbjct: 141 GHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVE-AQGIQSGVVV 199
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG-CKLHRNLEIAHIAVNELMIL 239
+V+L K G +E A+E + N V W A+ + RN + I V M L
Sbjct: 200 GTALVNLYGKCGRIEAAVEAF-GQIVEKNVVAWSAISAAYARNDRNRDA--IRVLHRMDL 256
Query: 240 E---PNNSGYCTLL 250
E PN++ + ++L
Sbjct: 257 EGLVPNSTTFVSVL 270
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 193/327 (59%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++I+WTTM+ Y Q Q AL FN M GI P+QVT L AC++L AL G
Sbjct: 285 MPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEG 344
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + D ++ S L+++YAKCG + + VF EK+L WN II A H
Sbjct: 345 QQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHH 404
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF EA+ ++ M +PN T++ +LSAC+HAGLV+EG + F SM SI EH
Sbjct: 405 GFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEH 464
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
Y C+VDL S+AG LEDA LI K +P ++ +W ALLGGC H N I +A L+
Sbjct: 465 YTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEA 524
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP+N+G TLL N+YA +W E +IR M G++K+ PG SWIE+ KV+ F + DK
Sbjct: 525 EPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQ-PGCSWIEVANKVHVFVSRDK 583
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SH SD I L + +++A VP
Sbjct: 584 SHSESDLINDLLQDIHRIMRMAGTVPR 610
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 119/256 (46%), Gaps = 20/256 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG----A 56
MP RD++SWTTMI+ ++N +A F+ M + V+ ++S A A
Sbjct: 192 MPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNV----VSWNAMISGYARNHRIEEA 247
Query: 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
LDL ++ + DV + ++ + + L + +F ++ ++N+ W +++ G
Sbjct: 248 LDLFTKMPIR--------DVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNG 299
Query: 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
+ AL +F+ M+ + ++PN VTF+ L AC++ + EG ++ M C
Sbjct: 300 YLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEG-QQVHQMICKTPSQF 358
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR-NLEIAHIAVN- 234
+ +++L +K G + A + S + + + W ++ H +E H+ N
Sbjct: 359 DTFVESTLMNLYAKCGEIRLARNVFDFS-MEKDLISWNGIIAAYAHHGFGIEAMHLYKNM 417
Query: 235 ELMILEPNNSGYCTLL 250
+ +PN++ Y LL
Sbjct: 418 QENGYKPNDATYVGLL 433
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 48/229 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SWT M+ Y++ +EA F+ PD
Sbjct: 67 MPDRDVVSWTAMVAAYARRGMLQEARVLFDR-------PDARR----------------- 102
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+V +AL+ YA+ +D + +F + E+N+ WN+++E
Sbjct: 103 --------------NVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAV 148
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A A+F+RM + + +L +G +E R+ F M +V
Sbjct: 149 GRVEDASALFNRMPVRDAGSWNI----LLCGLVRSGSLERARKMFERMP-----VRDVMS 199
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
+ M+ L++ G ++DA L + + N V W A++ G + +E A
Sbjct: 200 WTTMISGLARNGSVDDAWVLFDAMP-ERNVVSWNAMISGYARNHRIEEA 247
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
A G + + +F + ++++ W +++ A G EA +FDR + N VT+
Sbjct: 52 AAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR---PDARRNVVTWT 108
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206
++LS A V+E F M V + M++ + G +EDA L
Sbjct: 109 ALLSGYARARRVDEAEALFEGMA-----ERNVVSWNTMLEAYTAVGRVEDASALFNRMPV 163
Query: 207 QPNAVIWGALLGGCKLHRNLEIAH 230
+ +A W LL G +LE A
Sbjct: 164 R-DAGSWNILLCGLVRSGSLERAR 186
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 198/318 (62%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P + IISW MI+CY Q +F EALD +N MK G++PD+ T+A VLSAC LG L G
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG 362
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH + + V + ++L+DMYA+CG +D ++ +F ++ KN+ WN+II LA+H
Sbjct: 363 KMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMH 422
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +AL F M+++ P+ +TF+++LSAC H GL+E G+ F +M Y++ P VEH
Sbjct: 423 GRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEH 482
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL + G L A++LI+ +P+ V+WGALLG C++H +++I + +L+ LE
Sbjct: 483 YACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ G L+ NM E +W ++ ++R M+E G++K G S IE +++ A
Sbjct: 543 GMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNM-GVSSIETNSNIHESGAEGIG 601
Query: 301 HPASDEIYSSLSKLDEQL 318
H +SD++Y +L L
Sbjct: 602 HESSDDMYVGDDRLPHHL 619
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 33/254 (12%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +MI Y+Q REA F M+ G+ D+ T+ ++L AC+ G L+ G
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFG 230
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCG------------------------------ 90
+ +H +++ G ID+ + +ALVDMY KCG
Sbjct: 231 KLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKR 290
Query: 91 -SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
S+D + F ++ EK++ WN++I G HEAL +++RM + P+ T +VL
Sbjct: 291 ASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVL 350
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
SAC G + G+ + + P V + ++D+ ++ G ++ A+ L S N
Sbjct: 351 SACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLF-SEMPSKN 408
Query: 210 AVIWGALLGGCKLH 223
+ W A++G +H
Sbjct: 409 VISWNAIIGALAMH 422
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 13/279 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + ++I Y + +EAL M GI P++ T+ +L ACA + A +
Sbjct: 70 IPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHV 129
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
H V+++GF V++G+AL+ YA GSL S F ++ ++N+ WNS+I G A
Sbjct: 130 MVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQA 189
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR---RRFLSMTCGYSITPE 177
G EA ++F+ M + + + T +S+L AC+ G +E G+ L C +
Sbjct: 190 GNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILA 249
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+VD+ K G L A F+ NAV W ++L C L + I A +
Sbjct: 250 ----NALVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSML--CALAKRASID--AARDWF 300
Query: 238 ILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMKELGI 275
P S +++ Y + R+ E + MK LG+
Sbjct: 301 EQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGL 339
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 201/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +++++ T MI+ +QN E L F +M+ G P A L+AC+ LGAL+ G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++ +G++ + +G+A++ MYAKCG ++ + VF + +L WNS+I L H
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +FD+M+ E V P+ +TF++VL+AC+HAGLVE+GR F SM Y ITP +H
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y MVDL +AG+ A +I S +P A +W ALL GC++H N+++ A +L L
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G LL N+YA+V RW +V K+R M++ + K P SWIE+E KV+ F D
Sbjct: 625 PQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKE-PACSWIEVENKVHVFMVDDDV 683
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +Y L +L ++K Y+P+ + +L
Sbjct: 684 HPEVLSVYRYLEQLGLEMKKLGYIPDTKFVL 714
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 70/290 (24%)
Query: 1 MPARDIISWTTMITCYSQNKQ-------------------------------FREALDAF 29
MP RD ++WTTMIT Y +N F+EAL
Sbjct: 218 MPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLC 277
Query: 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID----VYIGSALVDM 85
+M+ GI D +T T++SACA++G+ +G+++H Y+++ + + + + +AL+ +
Sbjct: 278 RKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITL 337
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSI-------------------------------I 114
Y K +D + +F+ + +N+ WN+I I
Sbjct: 338 YCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMI 397
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYS 173
GLA +GF E L +F +M + EP F L+AC+ G +E GR+ + GY
Sbjct: 398 SGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYE 457
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ V + M+ + +K G++E A E + + + V W +++ H
Sbjct: 458 SSLSVGN--AMISMYAKCGVVE-AAESVFVTMPSVDLVSWNSMIAALGQH 504
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 55/265 (20%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDLGRE 62
RD + + MIT Y+ N AL+ F M+ PD T +VLSA +G +
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169
Query: 63 IHLYVMQIGFD-IDVYIGSALVDMYAK--------CGSLDRSLLVFFKLREKNLFCWNSI 113
+H V++ G + + +AL+ +Y K C ++ + +F ++ +++ W ++
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTM 229
Query: 114 IEGLA--------------------------VHGFAH-----EALAMFDRMIYENVEPNG 142
I G + G+ H EAL + +M + ++ +
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV--EHYGC------MVDLLSKAGLL 194
+T+ +++SAC + G + G++ Y + E+ H C ++ L K +
Sbjct: 290 ITYTTIISACANVGSFQMGKQMH-----AYILKNELNPNHSFCLSVSNALITLYCKNNKV 344
Query: 195 EDALELIRSSKFQPNAVIWGALLGG 219
++A ++ + + N + W A+L G
Sbjct: 345 DEARKIFYAMPVR-NIITWNAILSG 368
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++S+ ++ Y++N + EA FNE+ ++GI T A++LS A +GA+ G +I
Sbjct: 88 KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 147
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ G+ + I +AL+ MY++CG+++ + VF ++ ++N+ W S+I G A HGFA
Sbjct: 148 HGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFA 207
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL MF +M+ +PN +T+++VLSAC+H G++ EG++ F SM + I P +EHY C
Sbjct: 208 TRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC 267
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++GLL +A+E I S +A++W LLG C++H N E+ A ++ EP++
Sbjct: 268 MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD 327
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N++A +W +V KIR +MKE + K G SWIE+E +V++F + SHP
Sbjct: 328 PAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKE-AGCSWIEVENRVHRFHVGETSHPQ 386
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +IY L +L ++K Y+P+ + +L
Sbjct: 387 AWQIYQELDQLASKIKEMGYIPDTDFVL 414
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 114/258 (44%), Gaps = 53/258 (20%)
Query: 1 MPARDIISWTTMITCYSQNKQF-REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP +++SWT +IT Y Q+ + +EA++ F +M ++ ++ C
Sbjct: 21 MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN------------C-------- 60
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+G++L+ MYA+ G ++ + F L EKNL +N+I++G A
Sbjct: 61 ------------------VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 102
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITP 176
+ + EA +F+ + + + TF S+LS G + +G + R L GY
Sbjct: 103 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK--GGYKSNQ 160
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIA 232
+ ++ + S+ G +E A ++ + N + W +++ G H R LE+ H
Sbjct: 161 CI--CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKM 217
Query: 233 VNELMILEPNNSGYCTLL 250
+ +PN Y +L
Sbjct: 218 LE--TGTKPNEITYVAVL 233
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISWT+MIT ++++ AL+ F++M +G P+++T VLSAC+H+G + G
Sbjct: 186 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 245
Query: 61 REIHLYVM--QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
++ H M + G + + +VD+ + G L ++ + + W +++
Sbjct: 246 QK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 304
Query: 118 AVHG 121
VHG
Sbjct: 305 RVHG 308
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 85 MYAKC---GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA-HEALAMFDRMIYENVEP 140
MYAKC GS+D S VF ++ E N+ W +II G EA+ +F +MI +V
Sbjct: 1 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60
Query: 141 NGVTFISVLSACTHAGLVEEGRRRF 165
G + IS+ + +G +E+ R+ F
Sbjct: 61 VGNSLISMYA---RSGRMEDARKAF 82
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 205/307 (66%), Gaps = 1/307 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + I+SWT MI+ Y+ + EA+D F EM+ +GI PD++++ +VL +CAHLG+L+LG
Sbjct: 201 MIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELG 260
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH+Y + G + +AL++MY+KCG L +++ +F + + K++ W+++I G A H
Sbjct: 261 KWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYH 320
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH A F M V+PNG+TF+ +LSAC+H GL ++G + F M Y I P++EH
Sbjct: 321 GNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEH 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++D+L++AG LE A+E+ ++ +P++ IWG+LL C+ NL++A +A++ L+ +E
Sbjct: 381 YGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVE 440
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ G LL N+YA++ +W +V+++R +++ + K+ PG S IE+ V +F A D S
Sbjct: 441 PDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENM-KKTPGCSLIEVNNIVQEFVAGDNS 499
Query: 301 HPASDEI 307
P EI
Sbjct: 500 KPFWTEI 506
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 151/361 (41%), Gaps = 67/361 (18%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREI 63
++ + ++I Y+ N + + + + ++ I PD+ T + +CA LG+ LG+++
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H ++ + G V +AL+DMY K L + VF ++ E+++ WNS++ G A
Sbjct: 132 HGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQM 191
Query: 119 --VHGFAH------------------------EALAMFDRMIYENVEPNGVTFISVLSAC 152
G H EA+ F M +EP+ ++ ISVL +C
Sbjct: 192 KKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 153 THAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
H G +E G+ RR L G ++++ SK G+L A++L +K
Sbjct: 252 AHLGSLELGKWIHMYAERRGLLKQTGVC--------NALIEMYSKCGMLSQAIQLFEQTK 303
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTL-LLNMYAEVSRWAEVT 264
+ + + W ++ G H N A E+ + +G L LL+ + V W +
Sbjct: 304 GK-DVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQ-- 360
Query: 265 KIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYV 324
G + +M R+ YQ + + ++ + KL+ +++ +
Sbjct: 361 ----------------GLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTM 404
Query: 325 P 325
P
Sbjct: 405 P 405
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH ++ G ++ + +VD+ K G +D + +F ++ N+F +NSII +
Sbjct: 27 KKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 121 GFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-- 177
+ + ++ +++ + +E P+ TF + +C G G++ + Y P
Sbjct: 87 SLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHL---YKFGPRFH 143
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
V ++D+ K L DA ++ + + + W +LL G
Sbjct: 144 VVTENALIDMYMKFDDLVDAHKVFDEMS-ERDVISWNSLLSG 184
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 202/332 (60%), Gaps = 23/332 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DIISW TM+ E+K PD TMA +L ACA L AL+ G
Sbjct: 275 MVVKDIISWNTMV----------------GELK-----PDSRTMACILPACASLSALERG 313
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y+++ G+ D ++ +ALVD+Y KCG L + L+F + K+L W +I G +H
Sbjct: 314 KEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMH 373
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+ +EA+A F+ M +EP+ V+FIS+L AC+H+GL+E+G R F M ++I P++EH
Sbjct: 374 GYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEH 433
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLLS+ G L A + I + P+A IWGALL GC+++ ++E+A + LE
Sbjct: 434 YACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELE 493
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF-AASDK 299
P N+GY LL N+YAE +W EV ++R + + G+ K PG SWIE++ +V F + ++
Sbjct: 494 PENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKN-PGCSWIEIKGRVNLFVSGNNS 552
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP S +I S L K+ ++K Y P+ + L
Sbjct: 553 SHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL 584
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 3/253 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+ISW +MI+ Y N L + +M GI D T+ +VL CA G L LG+ +
Sbjct: 76 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAV 135
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H ++ F+ + + L+DMY+KCG LD +L VF K+ E+N+ W S+I G G++
Sbjct: 136 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWS 195
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
A+ + +M E V+ + V S+L AC +G ++ G+ + ++ +
Sbjct: 196 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNA 254
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVNELMILEPN 242
++D+ +K G +E A + S+ + + W ++G K R + A L LE
Sbjct: 255 LMDMYAKCGSMEGANSVF-STMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERG 313
Query: 243 NSGYCTLLLNMYA 255
+ +L N Y+
Sbjct: 314 KEIHGYILRNGYS 326
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SWT+MI Y+++ A+ +M+ G+ D V + ++L ACA G+LD G
Sbjct: 174 MGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG 233
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y+ ++++ +AL+DMYAKCGS++ + VF + K++ WN+++ L
Sbjct: 234 KDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGEL--- 290
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
+P+ T +L AC +E G+ + GYS V
Sbjct: 291 ------------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA 332
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
+ +VDL K G+L A L+ + V W ++ G +H A NE+
Sbjct: 333 N--ALVDLYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 389
Query: 239 -LEPNNSGYCTLL 250
+EP+ + ++L
Sbjct: 390 GIEPDEVSFISIL 402
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 34/197 (17%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFF-- 100
++S A G L GR + FD +VY+ + +V YAK G S+ +F
Sbjct: 2 LVSFYATCGDLKEGRRV--------FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 53
Query: 101 ------------------KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
KL ++++ WNS+I G +G L ++ +M+Y ++ +
Sbjct: 54 VEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDL 113
Query: 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
T ISVL C +G + G + S+ S + ++D+ SK G L+ AL +
Sbjct: 114 ATIISVLVGCAKSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFE 172
Query: 203 SSKFQPNAVIWGALLGG 219
+ N V W +++ G
Sbjct: 173 KMG-ERNVVSWTSMIAG 188
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 204/331 (61%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++I+SW MI+ +Q EAL FN MK G P A + +C+ LG+L G
Sbjct: 385 MPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHG 444
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H V++ G++ + G+AL+ MYA+CG +D + +F + + WN++I L H
Sbjct: 445 RQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQH 504
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+ +F+ M+ E + P+ ++F++V+SAC+HAGLV+EGR+ F SM Y + P+ EH
Sbjct: 505 GQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEH 564
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y ++DLL +AG +A E++ S F+P A IW ALL GC++H N+++ A L L+
Sbjct: 565 YARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELK 624
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL NMYA +W ++ K+R M++ G++K PG SWIE+E KV+ F D +
Sbjct: 625 PQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKE-PGCSWIEVENKVHSFLVGDAN 683
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +IY+ L +L +++ YVP+ + +L
Sbjct: 684 HPEVRQIYNYLEQLVLEMRKIGYVPDTKCVL 714
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 37/252 (14%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
++W MI+ Y+ + EA + F +M S I D+ T +V+S CA+ G LG+E+H Y
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAY 314
Query: 67 VMQI----GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSI--------- 113
++ D+ + + +AL+ Y KCG +D + +F K+ E++L WN I
Sbjct: 315 FLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRC 374
Query: 114 ----------------------IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
I GLA GFA EAL F+RM + EP F + +
Sbjct: 375 MDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIIS 434
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
C+ G ++ G R+ + Y + ++ + ++ G++ DA + + +A+
Sbjct: 435 CSVLGSLKHG-RQLHAQVVRYGYESSLSAGNALITMYARCGVV-DAAHCLFINMPCVDAI 492
Query: 212 IWGALLGGCKLH 223
W A++ H
Sbjct: 493 SWNAMIAALGQH 504
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 45/277 (16%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG-RE 62
RD + + MIT YS N A++ F +M+ PD T +VL A A + + ++
Sbjct: 110 RDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQ 169
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF-------------- 108
+H V++ G + +AL+ Y KC + + + LF
Sbjct: 170 LHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTI 229
Query: 109 --------------------------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142
WN++I G A G EA MF +MI ++ +
Sbjct: 230 ITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDE 289
Query: 143 VTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
TF SV+S C +AG G+ FL + + ++ K G ++ A E
Sbjct: 290 FTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQE 349
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ + + V W +L G R ++ A NE+
Sbjct: 350 IFNKMP-ERDLVSWNIILSGYVNVRCMDEAKSFFNEM 385
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 188/287 (65%), Gaps = 3/287 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW +MI Y Q K + AL F EM+ + + +T+ +VL ACA GAL++G
Sbjct: 348 MPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIG 407
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IHL + Q + I+ Y+ +ALVDMYAKCG L+ + VF +L+ K++ CWN++I LAVH
Sbjct: 408 RKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVH 467
Query: 121 GFAHEALAMFD--RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G+ EAL +F M + PN VTFI VL AC+H GLV+EGR F M Y I P++
Sbjct: 468 GYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDI 527
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+HYGCMVDLLS+ GLL++A +I++ F+ N+V+W LLG C++H ++++A + +L
Sbjct: 528 KHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGK 587
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWI 285
+EP G LL N+YAE RW +V ++R M G+ K+ PGSS I
Sbjct: 588 MEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPKK-PGSSHI 633
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141
L+ Y + G ++ + +VF ++ E++ WNS+I G ALA+F M NVE
Sbjct: 328 LIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEAT 387
Query: 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALE 199
+T ISVL AC G +E GR+ LS+ ++E Y +VD+ +K G L A E
Sbjct: 388 DITLISVLGACAETGALEIGRKIHLSLK---QREYKIEGYLSNALVDMYAKCGHLNLAWE 444
Query: 200 LIRSSKFQPNAVIWGALLGGCKLH 223
+ K + + W A++ +H
Sbjct: 445 VFSELKMK-HISCWNAMIVSLAVH 467
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 36/269 (13%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHL----------GALDL 59
TMI Y+++ +A+ +N M I D T L ACA + LD+
Sbjct: 181 NTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDI 240
Query: 60 ---GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
G EIH + ++G D D +I ++LV +Y++CG LD + VF ++ EK + WN +I
Sbjct: 241 ACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMIS- 299
Query: 117 LAVHGFAHEALAMF---DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
A++ + F D +I N V++ +++ G +E+ + F M
Sbjct: 300 ------AYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEM----- 348
Query: 174 ITPEVE--HYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGCKLHRNLEI 228
PE + + M+ + AL L R + + + ++LG C LEI
Sbjct: 349 --PERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEI 406
Query: 229 AHIAVNELMILEPNNSGYCT-LLLNMYAE 256
L E GY + L++MYA+
Sbjct: 407 GRKIHLSLKQREYKIEGYLSNALVDMYAK 435
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 203/331 (61%), Gaps = 11/331 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ +WT M+ ++QN Q + AL F++M+ +G+ DQV + LSACA LG L LG
Sbjct: 222 MPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLG 281
Query: 61 REIHLYVMQI----GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116
+ IH YV + + V + +AL+ MYA CG++D + +F ++ ++N W+SII G
Sbjct: 282 KWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITG 341
Query: 117 LAVHGFAHEALAMFDRMI---YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
A G EA+ +F M+ V P+ +TFI L+AC+HAGL+ +G R F SM +
Sbjct: 342 FAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFG 401
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI-AHIA 232
+ P++EHYGCMVDLLS+AGLL +AL LI S +PN +WGALL GC+LH+N EI +H+A
Sbjct: 402 VIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVA 461
Query: 233 VNELMILEPNN--SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERK 290
+ ++PNN +GY LL N+YA RW + +R M ++G+ K+ G SWIE+
Sbjct: 462 KHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGV-KKPSGRSWIEINGV 520
Query: 291 VYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321
+ F +++H + IY L + Q ++
Sbjct: 521 LCSFMVGEETHKDVNLIYEMLGNITRQTQMG 551
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 40/250 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I ++++K +++++ F M +G+ + T + +LSAC G +IH V+
Sbjct: 93 WNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVL 152
Query: 69 QIGFDIDVYIGSALVDMYAKCG-----SLDRSLLVFFKLREKNLFCWNSIIEG------- 116
G+ ++Y+ + L+++YA G L R+L +F ++ + N+ WNS++ G
Sbjct: 153 VNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDF 212
Query: 117 -------------------LAVHGFAHE-----ALAMFDRMIYENVEPNGVTFISVLSAC 152
+ V GFA AL++FD+M VE + V ++ LSAC
Sbjct: 213 DGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSAC 272
Query: 153 THAGLVEEGR--RRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
G + G+ ++ T P V ++ + + G ++ A +L Q N
Sbjct: 273 AELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIP-QRN 331
Query: 210 AVIWGALLGG 219
V W +++ G
Sbjct: 332 TVSWSSIITG 341
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 22/235 (9%)
Query: 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF 100
Q + +VL +C L + H ++ GF YI + L+ +Y GSL + VF
Sbjct: 27 QQFIFSVLKSCVSFRNLA---KTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFE 83
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
+ + WN II+G + +++ +F RM VE NG T+ +LSAC + L E
Sbjct: 84 DITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFRE 143
Query: 161 GRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAG-----LLEDALELIRSSKFQPNAVIWG 214
G + + GY V +++L + G L+ AL L N V W
Sbjct: 144 GEQIHGRVLVNGYWSNLYVRTN--LINLYANGGDGGDFDLKRALYLFDEMP-DSNVVGWN 200
Query: 215 ALLGGCKLHRNLEIAHIAVNEL----------MILEPNNSGYCTLLLNMYAEVSR 259
+LL G + + A +E+ M+ +G C L L+++ ++ R
Sbjct: 201 SLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRR 255
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 203/332 (61%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++I+WT M+ +QN +AL F +M+ GI+ + VT +++ +CAHLG+L G
Sbjct: 392 MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG 451
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAV 119
R IH ++ ++GF D+ +ALVDMYAKCG ++ + +F K++ WNS+I G +
Sbjct: 452 RSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGM 511
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG ++A+ ++ +MI E ++PN TF+S+LSAC+H+ LVE+G F SM ++I P +
Sbjct: 512 HGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEK 571
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLLS+AG E+A LI FQP + ALL GC+ H+N+ + ++L+ L
Sbjct: 572 HYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLAL 631
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+ N G +L N+YAE RW +V IR M+ G+ K+ PG S +E V+ F A D
Sbjct: 632 DAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGL-KKTPGYSLVETGNWVHTFFAGDN 690
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP +EIY L L ++ + YVP+ +L
Sbjct: 691 SHPNWEEIYHFLESLRSAVETSGYVPDTSCVL 722
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW MI+ +N E+ D F+ + S D T+ ++L C+ +L G
Sbjct: 292 MPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG 351
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ F+ ++ + +A+VD+Y+KCGSL ++ VF +++++N+ W +++ GLA +
Sbjct: 352 KILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQN 410
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM-TCGYSITPEVE 179
G A +AL +F +M E + N VTF+S++ +C H G ++ GR + G++ ++
Sbjct: 411 GHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAF--DIV 468
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIAVNE 235
+ +VD+ +K G + A + + V+W +++ G +H + + I H + E
Sbjct: 469 NMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEE 528
Query: 236 LMILEPNNSGYCTLL 250
L+PN + + +LL
Sbjct: 529 G--LKPNQTTFLSLL 541
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 3/219 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++ W ++I Y Q F A F EM SGI P +TM +++ AC +G L LG
Sbjct: 191 MPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLG 250
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H YV+ +G D+ + ++ VDMY+K G ++ + VF+K+ +NL WN++I G +
Sbjct: 251 KCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRN 310
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G E+ +F R++ + + T +S+L C+ + G + L S +
Sbjct: 311 GLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG--KILHGCAIRSFESNLIL 368
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VDL SK G L+ A + K N + W A+L G
Sbjct: 369 STAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTAMLVG 406
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 2/209 (0%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
M+ Y Q+ ++RE L+ F M++ + D + L ACA ++G EI ++ G
Sbjct: 101 MLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKG 160
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
+ + ++GS+++ K G + + VF + K++ CWNSII G G A +F
Sbjct: 161 MEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFF 220
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
M ++P+ +T S++ AC G ++ G+ G + ++ VD+ SK
Sbjct: 221 EMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMH-GYVLGLGLGNDILVLTSFVDMYSKM 279
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGC 220
G +E A + + N V W A++ GC
Sbjct: 280 GDIESARWVFYKMPTR-NLVSWNAMISGC 307
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 204/329 (62%), Gaps = 2/329 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD+++WT MI Y QN ++A++ F M G P+ T+AT+LS + L +LD GR+I
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQI 434
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVHGF 122
H + G V + +AL+ MYAK GS++ + VF + +++ W S+I LA HG
Sbjct: 435 HASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGL 494
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
EAL +F+RM+ ++P+ +T++ VLSACTH GLVE+GR + M + I P HY
Sbjct: 495 GEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYA 554
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CM+DL +AGLL++A I + +P+ + WG+LL CK+H+N+E+A +A L+++EP
Sbjct: 555 CMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPE 614
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NSG + L N+Y+ +W IR +MK+ G+ K+ G SW++++ KV+ F D HP
Sbjct: 615 NSGAYSALANVYSACGQWENAANIRKSMKDKGV-KKDQGFSWVQIKNKVHIFGVDDGLHP 673
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAML 331
D IY ++K+ +++K +VP+ E++L
Sbjct: 674 QRDAIYEMMAKIWKEIKKMGFVPDTESVL 702
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 42/256 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP D +SWT MI Y+Q QF A+ F EM + + P Q T+ VL++CA + L +G
Sbjct: 105 MPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIG 164
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR----------------- 103
R++H +V++ G + + ++L++MYAK G + +VF +++
Sbjct: 165 RKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQS 224
Query: 104 --------------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISV 148
E+++ WN++I G HGF EAL +F +M+ + + +P+ T S
Sbjct: 225 GLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASA 284
Query: 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG----CMVDLLSKAGLLEDALELIRSS 204
LSAC + ++ G++ + I E + +G ++ + SK+G +E A ++I S
Sbjct: 285 LSACANLENLKLGKQ-----IHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQS 339
Query: 205 KFQPNAVI-WGALLGG 219
VI + ALL G
Sbjct: 340 MISNLDVIAFTALLDG 355
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 37/258 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M RD++SW MI+ Y+Q+ REALD F++M +S PD+ T+A+ LSACA+L L L
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296
Query: 60 GREIHLYVMQIGFD---------------------------------IDVYIGSALVDMY 86
G++IH ++++ FD +DV +AL+D Y
Sbjct: 297 GKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGY 356
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
K G ++ + +F LR +++ W ++I G +GF +A+ +F MI E +PN T
Sbjct: 357 VKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLA 416
Query: 147 SVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
++LS + ++ GR+ S T G + + V + ++ + +K+G + DA +
Sbjct: 417 TMLSVSSSLASLDHGRQIHASATRSGNASSVSVSN--ALITMYAKSGSINDARWVFNLIH 474
Query: 206 FQPNAVIWGALLGGCKLH 223
++ + + W +++ H
Sbjct: 475 WKRDTITWTSMIIALAQH 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ IH +++ G + V++ + L++ YAK G + + VF ++ K++F WN I+ G A
Sbjct: 32 GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
G EA +F+ M EP+ V++ +++ G E F M
Sbjct: 92 GGRLEEAHRVFEEM----PEPDSVSWTAMIVGYNQMGQFENAIGMFREM 136
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 205/334 (61%), Gaps = 4/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS--PDQVTMATVLSACAHLGALD 58
MP RD ++W MI+C +N + R+AL F+ ++NS PD VT +L ACAHL AL+
Sbjct: 100 MPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALE 159
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G IH Y+M+ G+ + + +AL+ MY++CG LD++ VF KN+ W+++I GLA
Sbjct: 160 FGERIHGYMMEHGYGGALNLSNALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLA 219
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-MTCGYSITPE 177
++G+ EA+ F+ M+ + P+ T VLSAC+++G+V+EG F M+ + +TP
Sbjct: 220 MNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPN 279
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
V HYGCMVDLL AGLL+ A +LI S +P++ W LLG C++H ++ + + L+
Sbjct: 280 VHHYGCMVDLLGHAGLLDKAXQLIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLI 339
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAAS 297
L+ +G LLLN+Y+ W +V ++R MK I+ PG S IE++ V++F
Sbjct: 340 ELKAQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTT-PGCSTIELKGVVHEFVVD 398
Query: 298 DKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SH + EIY +L +++ QL++A YV EL + L
Sbjct: 399 DVSHTRNHEIYETLDEINHQLRIAGYVVELSSEL 432
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 12/218 (5%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR--EIHLY 66
+ TMI S + ++ L + +M+ GI+ D ++ + V+ +C L L L ++H
Sbjct: 5 YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCN 64
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+ + G D + +A++D+Y+ C + VF ++ ++ WN +I + +A
Sbjct: 65 IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124
Query: 127 LAMFDRMIYEN----VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHY 181
L++FD + +N EP+ VT + +L AC H +E G R M GY + +
Sbjct: 125 LSLFD--VLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSN- 181
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + S+ G L+ A E+ + + N V W A++ G
Sbjct: 182 -ALISMYSRCGCLDKAXEVFKGTG-NKNVVSWSAMISG 217
>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
Length = 583
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 209/331 (63%), Gaps = 5/331 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++SW +MI ++ +EA+ F+ + +SG+ PD + ++VLSACA GA G
Sbjct: 34 MPVKDLVSWNSMIAGAVRSSHLKEAMYLFSRLVSSGLVPDCFSFSSVLSACARAGARRYG 93
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H + ++G +++ + SALVDMYAKCG +D + +F K++ ++ WN++I GLA H
Sbjct: 94 VWVHHLMTELGVEMNHILTSALVDMYAKCGRIDVATEIFNKVKRNHISVWNTMISGLASH 153
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + + +F +M E + P+GVTF+++L+AC+H G+VEE R+ F SMT YSITPEVEH
Sbjct: 154 GLGSDVVILFHKMKSEELVPDGVTFVALLTACSHCGMVEEARQYFRSMTTEYSITPEVEH 213
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG +VD LS+AGLL++A +L+ S +P+ VIW ALL C+ +R ++ + + +
Sbjct: 214 YGALVDTLSRAGLLDEAYKLVMSMNVKPDVVIWRALLSACRRYRQTKLGEVTIEHMAC-- 271
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
+ SG TLL NMY+ +RW + ++ K+ I K G SW+E+ + F A D+S
Sbjct: 272 -HGSGDYTLLSNMYSSANRWNDSEEVWRQRKQKKIRK-SKGLSWVELGGSTHGFKAGDRS 329
Query: 301 HPASDEIYSSLSKLDEQLKLASY-VPELEAM 330
HP +++IY L L ++ K+ + ELE +
Sbjct: 330 HPDTEDIYLVLHGLCKRAKVEVFKQSELEQL 360
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFD 131
+ D + G+ ++ + K G LD++ +F ++ K+L WNS+I G EA+ +F
Sbjct: 4 WSTDPFHGNLMLMGFLKSGQLDKAYQIFKRMPVKDLVSWNSMIAGAVRSSHLKEAMYLFS 63
Query: 132 RMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLS 189
R++ + P+ +F SVLSAC AG G MT + E+ H +VD+ +
Sbjct: 64 RLVSSGLVPDCFSFSSVLSACARAGARRYGVWVHHLMT---ELGVEMNHILTSALVDMYA 120
Query: 190 KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
K G ++ A E+ K + + +W ++ G H
Sbjct: 121 KCGRIDVATEIFNKVK-RNHISVWNTMISGLASH 153
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 205/327 (62%), Gaps = 5/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLGR 61
R++++WT MI ++Q +AL F EM + G++P+ T++ +L ACAHL A+ +G+
Sbjct: 439 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 498
Query: 62 EIHLYVMQI-GFDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH YV++ +D Y + + L++MY+KCG +D + VF + +K+ W S++ G +
Sbjct: 499 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 558
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +FD+M P+ +TF+ VL AC+H G+V++G F SM+ Y +TP E
Sbjct: 559 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 618
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY +DLL++ G L+ A + ++ +P AV+W ALL C++H N+E+A A+N+L+ +
Sbjct: 619 HYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 678
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
N G TL+ N+YA RW +V +IR MK+ GI+KR PG SW++ ++ F D+
Sbjct: 679 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKR-PGCSWVQGQKGTASFFVGDR 737
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP S +IY+ L L +++K YVPE
Sbjct: 738 SHPLSPQIYALLESLIDRIKAMGYVPE 764
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 28/240 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++WT +I YSQ EAL+ F +M SG P+ VT+ +VLSACA LGA G EIH
Sbjct: 327 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIH 386
Query: 65 LYVMQI----------GFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNS 112
Y ++ G D D+ + +AL+DMY+KC S RS+ L E+N+ W
Sbjct: 387 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 446
Query: 113 IIEGLAVHGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGR-------R 163
+I G A +G +++AL +F MI E V PN T +L AC H + G+ R
Sbjct: 447 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 506
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ Y + C++++ SK G ++ A + S Q +A+ W +++ G +H
Sbjct: 507 HHQYDSSAYFVA------NCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 559
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 51/266 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHLGALD 58
D+ISW ++++ + ++ ALD F++M K + D +++ +L AC L A+
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 244
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF----FK------------- 101
+E+H ++ G +DV++G+AL+D YAKCG ++ ++ VF FK
Sbjct: 245 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 304
Query: 102 --------------LREKN----LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+R++N + W ++I G + G +HEAL +F +MI+ PN V
Sbjct: 305 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 364
Query: 144 TFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLL 194
T ISVLSAC G +G + L++ + E + Y ++D+ SK
Sbjct: 365 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 424
Query: 195 EDALELIRSSKFQP-NAVIWGALLGG 219
+ A + + N V W ++GG
Sbjct: 425 KAARSIFDDIPLEERNVVTWTVMIGG 450
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 33/241 (13%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W +I + + + A++ M +G D T+ VL AC L + G H +
Sbjct: 85 WNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLIC 144
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHE 125
GF+ +V+I +ALV MY++CGSL+ + ++F ++ ++ ++ WNSI+ A
Sbjct: 145 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 204
Query: 126 ALAMFDRM---IYE---NVEPNGVTFISVLSAC-----------THAGLVEEGRRRFLSM 168
AL +F +M ++E N + ++ +++L AC H + G FL +
Sbjct: 205 ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG--TFLDV 262
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEI 228
G ++D +K GL+E+A+++ +F+ + V W A++ G N +
Sbjct: 263 FVG----------NALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKA 311
Query: 229 A 229
A
Sbjct: 312 A 312
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ISWT+M+T Y + + EALD F++M+ +G PD +T VL AC+H G +D G
Sbjct: 541 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 600
Query: 61 REIHLYVMQIGFDIDVYIGSA----LVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIE 115
Y + D + + +D+ A+ G LD++ + E W +++
Sbjct: 601 LS---YFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLS 657
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
VH A ++++ N E +G T IS + A T + R R L G
Sbjct: 658 ACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYA-TAGRWKDVARIRHLMKKSGIKK 716
Query: 175 TP 176
P
Sbjct: 717 RP 718
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137
+G+ +V Y CG+ D +LLV ++ WN +I G A+ + RM+
Sbjct: 53 LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112
Query: 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197
+ T VL AC G F + C V +V + S+ G LE+A
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 205/327 (62%), Gaps = 5/327 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS--GISPDQVTMATVLSACAHLGALDLGR 61
R++++WT MI ++Q +AL F EM + G++P+ T++ +L ACAHL A+ +G+
Sbjct: 332 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 391
Query: 62 EIHLYVMQI-GFDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH YV++ +D Y + + L++MY+KCG +D + VF + +K+ W S++ G +
Sbjct: 392 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 451
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG EAL +FD+M P+ +TF+ VL AC+H G+V++G F SM+ Y +TP E
Sbjct: 452 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 511
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY +DLL++ G L+ A + ++ +P AV+W ALL C++H N+E+A A+N+L+ +
Sbjct: 512 HYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 571
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
N G TL+ N+YA RW +V +IR MK+ GI+KR PG SW++ ++ F D+
Sbjct: 572 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKR-PGCSWVQGQKGTASFFVGDR 630
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP S +IY+ L L +++K YVPE
Sbjct: 631 SHPLSPQIYALLESLIDRIKAMGYVPE 657
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 28/240 (11%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+++WT +I YSQ EAL+ F +M SG P+ VT+ +VLSACA LGA G EIH
Sbjct: 220 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIH 279
Query: 65 LYVMQI----------GFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNS 112
Y ++ G D D+ + +AL+DMY+KC S RS+ L E+N+ W
Sbjct: 280 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 339
Query: 113 IIEGLAVHGFAHEALAMFDRMIYE--NVEPNGVTFISVLSACTHAGLVEEGR-------R 163
+I G A +G +++AL +F MI E V PN T +L AC H + G+ R
Sbjct: 340 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 399
Query: 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ Y + C++++ SK G ++ A + S Q +A+ W +++ G +H
Sbjct: 400 HHQYDSSAYFVA------NCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 452
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 51/266 (19%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHLGALD 58
D+ISW ++++ + ++ ALD F++M K + D +++ +L AC L A+
Sbjct: 78 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 137
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF----FK------------- 101
+E+H ++ G +DV++G+AL+D YAKCG ++ ++ VF FK
Sbjct: 138 QTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYS 197
Query: 102 --------------LREKN----LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143
+R++N + W ++I G + G +HEAL +F +MI+ PN V
Sbjct: 198 QSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCV 257
Query: 144 TFISVLSACTHAGLVEEG--------RRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLL 194
T ISVLSAC G +G + L++ + E + Y ++D+ SK
Sbjct: 258 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 317
Query: 195 EDALELIRSSKFQP-NAVIWGALLGG 219
+ A + + N V W ++GG
Sbjct: 318 KAARSIFDDIPLEERNVVTWTVMIGG 343
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 33/218 (15%)
Query: 32 MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91
M +G D T+ VL AC L + G H + GF+ +V+I +ALV MY++CGS
Sbjct: 1 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60
Query: 92 LDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRM---IYE---NVEPNG 142
L+ + ++F ++ ++ ++ WNSI+ A AL +F +M ++E N +
Sbjct: 61 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120
Query: 143 VTFISVLSAC-----------THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
++ +++L AC H + G FL + G ++D +K
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNG--TFLDVFVG----------NALIDAYAKC 168
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
GL+E+A+++ +F+ + V W A++ G N + A
Sbjct: 169 GLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAA 205
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ISWT+M+T Y + + EALD F++M+ +G PD +T VL AC+H G +D G
Sbjct: 434 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 493
Query: 61 REIHLYVMQIGFDIDVYIGSA----LVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIE 115
Y + D + + +D+ A+ G LD++ + E W +++
Sbjct: 494 LS---YFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLS 550
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
VH A ++++ N E +G T IS + A T + R R L G
Sbjct: 551 ACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYA-TAGRWKDVARIRHLMKKSGIKK 609
Query: 175 TP 176
P
Sbjct: 610 RP 611
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 197/329 (59%), Gaps = 2/329 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ +SW +M+ Y+QN EA A+ + SG P +++ L+ CA L L LG
Sbjct: 281 MGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLG 340
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ D ++++ SALVDMY KCG ++ + +F++ ++NL WN++I G A
Sbjct: 341 RALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHI 400
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A AL +FD MI PN +T ++V+++C+ GL ++G F +M + I P E
Sbjct: 401 GDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTE 460
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDLL +AG+ E A E+I+ +P+ +WGALLG CK+H E+ IA +L L
Sbjct: 461 HYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFEL 520
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P +SG LL NM+A RWAE T IR MK +GI+K PG SW+ + V+ F A D
Sbjct: 521 DPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKD-PGCSWVTWKNVVHVFRAKDT 579
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELE 328
H +EI + LSKL +Q++ A Y+P+ +
Sbjct: 580 KHEMYNEIQALLSKLRKQMQAAGYMPDTQ 608
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 9/283 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++W ++T + + E ++A+ ++ +G P+ V+ +ACA L LG
Sbjct: 180 MPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLG 239
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H +V++ GF++DV + +++VD Y KC ++ VF + +N W S++ A +
Sbjct: 240 EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQN 299
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVE 179
G EA A + EP S L+ C AGL+ R L S I +
Sbjct: 300 GAEEEAFAAYLGARRSGEEPTDFMVSSALTTC--AGLLGLHLGRALHAVAVRSCIDANIF 357
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+VD+ K G +EDA ++ + Q N V W A++GG + + A + ++++
Sbjct: 358 VASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRS 416
Query: 240 EPNNSGYCTLLLNMYAEVSRWA---EVTKIRVAMKE-LGIEKR 278
Y T L+N+ SR + ++ M+E GIE R
Sbjct: 417 GETAPNYIT-LVNVITSCSRGGLTKDGYELFETMRERFGIEPR 458
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD-LG 60
P ++S+T I+ +Q+ + AL AF M G+ P+ T + A A +G
Sbjct: 78 PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137
Query: 61 REIHLYVMQIGF-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+IH ++ G+ +D ++ A +DMY K G L + +F ++ +N+ WN+++ +
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
G E + + + PN V+ + +AC A + G + + CG+ + +V
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEM--DV 255
Query: 179 EHYGCMVDLLSK 190
MVD K
Sbjct: 256 SVLNSMVDFYGK 267
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 207/328 (63%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
++++S+ ++ Y++N + EA FNE+ ++GI T A++LS A +GA+ G +I
Sbjct: 220 KNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 279
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H +++ G+ + I +AL+ MY++CG+++ + VF ++ ++N+ W S+I G A HGFA
Sbjct: 280 HGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFA 339
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
AL MF +M+ +PN +T+++VLSAC+H G++ EG++ F SM + I P +EHY C
Sbjct: 340 TRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC 399
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL ++GLL +A+E I S +A++W LLG C++H N E+ A ++ EP++
Sbjct: 400 MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD 459
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
LL N++A +W +V KIR +MKE + K G SWIE+E +V++F + SHP
Sbjct: 460 PAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKE-AGCSWIEVENRVHRFHVGETSHPQ 518
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +IY L +L ++K Y+P+ + +L
Sbjct: 519 AWQIYQELDQLASKIKEMGYIPDTDFVL 546
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 139/244 (56%), Gaps = 14/244 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++++WT MIT ++Q R+A+D F +M+ SG PD+ T ++VLSAC LG L LG
Sbjct: 11 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 70
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC---GSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+++H V+++G +DV +G +LVDMYAKC GS+D S VF ++ E N+ W +II
Sbjct: 71 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 130
Query: 118 AVHGFA-HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
A G EA+ +F +MI ++ PN +F SVL AC + G + + Y++
Sbjct: 131 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKL 185
Query: 177 EVEHYGC----MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232
+ C ++ + +++G +EDA + F+ N V + A++ G + E A +
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIVDGYAKNLKSEEAFLL 244
Query: 233 VNEL 236
NE+
Sbjct: 245 FNEI 248
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 132/258 (51%), Gaps = 15/258 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQF-REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
MP +++SWT +IT Y+Q+ + +EA++ F +M + I P+ + ++VL AC +L
Sbjct: 115 MPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYT 174
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +++ Y +++G +G++L+ MYA+ G ++ + F L EKNL +N+I++G A
Sbjct: 175 GEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAK 234
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSITP 176
+ + EA +F+ + + + TF S+LS G + +G + R L GY
Sbjct: 235 NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK--GGYKSNQ 292
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----RNLEIAHIA 232
+ ++ + S+ G +E A ++ + N + W +++ G H R LE+ H
Sbjct: 293 CI--CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKM 349
Query: 233 VNELMILEPNNSGYCTLL 250
+ +PN Y +L
Sbjct: 350 LETGT--KPNEITYVAVL 365
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++ISWT+MIT ++++ AL+ F++M +G P+++T VLSAC+H+G + G
Sbjct: 318 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 377
Query: 61 REIHLYVM--QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
++ H M + G + + +VD+ + G L ++ + + W +++
Sbjct: 378 QK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 436
Query: 118 AVHG 121
VHG
Sbjct: 437 RVHG 440
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157
VF K+ E+NL W +I A G A +A+ +F M P+ T+ SVLSACT GL
Sbjct: 7 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66
Query: 158 VEEGRR---RFLSMTCGYSITPEVEHYGC-MVDLLSKA---GLLEDALELIRSSKFQPNA 210
+ G++ R + + + GC +VD+ +K G ++D+ ++ + N
Sbjct: 67 LALGKQLHSRVIRLGLALDVC-----VGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNV 120
Query: 211 VIWGALL 217
+ W A++
Sbjct: 121 MSWTAII 127
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,967,016,470
Number of Sequences: 23463169
Number of extensions: 192834954
Number of successful extensions: 528424
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9308
Number of HSP's successfully gapped in prelim test: 1980
Number of HSP's that attempted gapping in prelim test: 424054
Number of HSP's gapped (non-prelim): 49633
length of query: 331
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 188
effective length of database: 9,003,962,200
effective search space: 1692744893600
effective search space used: 1692744893600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)