BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043124
         (331 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RGY|A Chain A, Crystal Structure Of Transcriptional Regulator Of Laci
           Family From Burkhoderia Phymatum
          Length = 290

 Score = 31.2 bits (69), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214
           A L+E G R+   ++  ++ +  VE      D L++ G+  D++ LI  S F P     G
Sbjct: 121 ATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE-SDFSPE----G 175

Query: 215 ALLGGCKL 222
                C+L
Sbjct: 176 GYAATCQL 183


>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii
 pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii
 pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii
 pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii
 pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii In Complex
           With Sialic Acid Alditol
 pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii In Complex
           With Sialic Acid Alditol
 pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii In Complex
           With Sialic Acid Alditol
 pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Iii In Complex
           With Sialic Acid Alditol
 pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Ii Complexed
           With 4-Deoxy-Sialic Acid
 pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Ii Complexed
           With 4-Deoxy-Sialic Acid
 pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Ii In Complex
           With 4-oxo-sialic Acid
 pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Ii In Complex
           With 4-oxo-sialic Acid
 pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form I
 pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form I
 pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form I
 pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form I
 pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Ii
 pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
           From Haemophilus Influenzae: Crystal Form Ii
          Length = 293

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 13/80 (16%)

Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247
           L+KAG L++ALE+   +    N +I G L  G          ++ + EL+ LE  ++GYC
Sbjct: 222 LTKAGKLKEALEIQHVT----NDLIEGILANGL---------YLTIKELLKLEGVDAGYC 268

Query: 248 TLLLNMYAEVSRWAEVTKIR 267
              +   A   + A+   ++
Sbjct: 269 REPMTSKATAEQVAKAKDLK 288


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,426,267
Number of Sequences: 62578
Number of extensions: 362516
Number of successful extensions: 785
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 4
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)