BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043124
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 263/328 (80%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +DIISWTTMI YSQNK++REA+ F +M GI PD+VTM+TV+SACAHLG L++G
Sbjct: 247 MPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 306
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+E+H+Y +Q GF +DVYIGSALVDMY+KCGSL+R+LLVFF L +KNLFCWNSIIEGLA H
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAH 366
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA EAL MF +M E+V+PN VTF+SV +ACTHAGLV+EGRR + SM YSI VEH
Sbjct: 367 GFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEH 426
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MV L SKAGL+ +ALELI + +F+PNAVIWGALL GC++H+NL IA IA N+LM+LE
Sbjct: 427 YGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLE 486
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSGY LL++MYAE +RW +V +IR M+ELGIEK CPG+S I ++++ + FAA+DKS
Sbjct: 487 PMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKS 546
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
H ASDE+ L ++ +Q+ LA YV E E
Sbjct: 547 HSASDEVCLLLDEIYDQMGLAGYVQETE 574
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 112/215 (52%), Gaps = 12/215 (5%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
TT+I YS + REA F+EM D + T++SA + +D + Q
Sbjct: 163 TTLIDFYSATGRIREARKVFDEMPER----DDIAWTTMVSAYRRVLDMDSANSL---ANQ 215
Query: 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129
+ + + + L++ Y G+L+++ +F ++ K++ W ++I+G + + EA+A+
Sbjct: 216 MS-EKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAV 274
Query: 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLL 188
F +M+ E + P+ VT +V+SAC H G++E G+ ++ G+ + +V +VD+
Sbjct: 275 FYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVL--DVYIGSALVDMY 332
Query: 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
SK G LE AL L+ + + N W +++ G H
Sbjct: 333 SKCGSLERAL-LVFFNLPKKNLFCWNSIIEGLAAH 366
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151
LD ++ +++E N+F +N++ +G +L ++ RM+ ++V P+ T+ S++ A
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 135
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
+ A E + + G+ +++ ++D S G + +A ++ + + +
Sbjct: 136 SSFASRFGESLQAHI-WKFGFGFHVKIQ--TTLIDFYSATGRIREARKVFDEMP-ERDDI 191
Query: 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254
W ++ + +++ A+ N+ + N L+N Y
Sbjct: 192 AWTTMVSAYRRVLDMDSANSLANQ---MSEKNEATSNCLINGY 231
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 220/330 (66%), Gaps = 2/330 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP+R++++WT +I Y Q++ F + + F EM S ++P++ T+++VLSACAH+GAL G
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG 325
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H Y+++ +I+ G+ L+D+Y KCG L+ ++LVF +L EKN++ W ++I G A H
Sbjct: 326 RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAH 385
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A +A +F M+ +V PN VTF++VLSAC H GLVEEGRR FLSM +++ P+ +H
Sbjct: 386 GYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADH 445
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDL + GLLE+A LI +P V+WGAL G C LH++ E+ A + ++ L+
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQ 505
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG TLL N+Y+E W EV ++R MK+ + K PG SWIE++ K+ +F A D
Sbjct: 506 PSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVK-SPGFSWIEVKGKLCEFIAFDDK 564
Query: 301 HP-ASDEIYSSLSKLDEQLKLASYVPELEA 329
P SD++Y +L + Q++L + ++ A
Sbjct: 565 KPLESDDLYKTLDTVGVQMRLPDELEDVTA 594
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D+++WT MI + +N EA+ F EMK +G++ +++T+ +VL A + + GR +
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV 226
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
H ++ G DV+IGS+LVDMY KC D + VF ++ +N+ W ++I G
Sbjct: 227 HGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
+ + +F+ M+ +V PN T SVLSAC H G + GRR M SI
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGT 345
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++DL K G LE+A+ L+ + N W A++ G H
Sbjct: 346 TLIDLYVKCGCLEEAI-LVFERLHEKNVYTWTAMINGFAAH 385
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 8/247 (3%)
Query: 9 WTTMITCYSQNKQFREALD--AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
W ++I +S L A+ M+ +G+ P + T +L A L + + H +
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAH 128
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
+++ G D D ++ ++L+ Y+ G D + +F +K++ W ++I+G +G A EA
Sbjct: 129 IVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA 188
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMV 185
+ F M V N +T +SVL A V GR L + G + +V +V
Sbjct: 189 MVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG-RVKCDVFIGSSLV 247
Query: 186 DLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNN 243
D+ K +DA ++ + N V W AL+ G R + + E++ + PN
Sbjct: 248 DMYGKCSCYDDAQKVFDEMPSR-NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNE 306
Query: 244 SGYCTLL 250
++L
Sbjct: 307 KTLSSVL 313
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 217/328 (66%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++ WTTMI+ Y ++ +EAL F EM SGI PD V+M +V+SACA+LG LD + +
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G + ++ I +AL++MYAKCG LD + VF K+ +N+ W+S+I L++HG A
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEA 426
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL++F RM ENVEPN VTF+ VL C+H+GLVEEG++ F SMT Y+ITP++EHYGC
Sbjct: 427 SDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGC 486
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDL +A LL +ALE+I S N VIWG+L+ C++H LE+ A ++ LEP++
Sbjct: 487 MVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ N+YA RW +V IR M+E + K G S I+ K ++F DK H
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKE-KGLSRIDQNGKSHEFLIGDKRHKQ 605
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
S+EIY+ L ++ +LKLA YVP+ ++L
Sbjct: 606 SNEIYAKLDEVVSKLKLAGYVPDCGSVL 633
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 37/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+++W TMI Y + EA F EMK+S + PD++ + ++SAC G +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYA-------------------------------KC 89
R I+ ++++ +D ++ +ALV MYA KC
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G LD + ++F + +K+L CW ++I + EAL +F+ M ++P+ V+ SV+
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVI 351
Query: 150 SACTHAGLVEEGRRRFLSMTCGY--SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
SAC + G++++ + +C + + E+ ++++ +K G L DA + +
Sbjct: 352 SACANLGILDKAK---WVHSCIHVNGLESELSINNALINMYAKCGGL-DATRDVFEKMPR 407
Query: 208 PNAVIWGALLGGCKLH 223
N V W +++ +H
Sbjct: 408 RNVVSWSSMINALSMH 423
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 96/203 (47%), Gaps = 2/203 (0%)
Query: 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV 76
S++ + R + + +++ G DQ + +L A + + AL G E+H +I D
Sbjct: 87 SRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDP 146
Query: 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++ + +DMYA CG ++ + VF ++ +++ WN++IE G EA +F+ M
Sbjct: 147 FVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDS 206
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196
NV P+ + +++SAC G + R + + + +V + + AG ++
Sbjct: 207 NVMPDEMILCNIVSACGRTGNMRYNRAIY-EFLIENDVRMDTHLLTALVTMYAGAGCMDM 265
Query: 197 ALELIRSSKFQPNAVIWGALLGG 219
A E R + N + A++ G
Sbjct: 266 AREFFRKMSVR-NLFVSTAMVSG 287
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SW++MI S + + +AL F MK + P++VT VL C+H G ++ G
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464
Query: 61 REIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGL 117
++I M ++I + +VD++ + L +L V + N+ W S++
Sbjct: 465 KKI-FASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523
Query: 118 AVHG 121
+HG
Sbjct: 524 RIHG 527
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 301 bits (771), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 218/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +SW MI YSQ+ EAL F +M+ G ++ + ++ LS CA + AL+LG
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ G++ ++G+AL+ MY KCGS++ + +F ++ K++ WN++I G + H
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF AL F+ M E ++P+ T ++VLSAC+H GLV++GR+ F +MT Y + P +H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLLEDA L+++ F+P+A IWG LLG ++H N E+A A +++ +E
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P NSG LL N+YA RW +V K+RV M++ G+ K+ PG SWIE++ K + F+ D+
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV-KKVPGYSWIEIQNKTHTFSVGDEF 667
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP DEI++ L +LD ++K A YV + +L
Sbjct: 668 HPEKDEIFAFLEELDLRMKKAGYVSKTSVVL 698
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 28/237 (11%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P +D+ +WT M++ Y QN+ EA + F++M ++V+ +L+ +++ +
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAK 332
Query: 62 EIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
E+ FD+ +V + ++ YA+CG + + +F K+ +++ W ++I G
Sbjct: 333 EL--------FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGY 384
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
+ G + EAL +F +M E N +F S LS C +E G++ + G T
Sbjct: 385 SQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-- 442
Query: 178 VEHYGCMVD-----LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
GC V + K G +E+A +L + + + V W ++ G H E+A
Sbjct: 443 ----GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVA 494
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI Y +N+ +A + F M D + T+LS A G +D
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDA 176
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R + M D+ +AL+ Y + ++ + ++F L WN ++ G
Sbjct: 177 RSV-FDRMPEKNDVSW---NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
EA FD M +V V++ ++++ +G ++E R+ F S +V
Sbjct: 233 KKIVEARQFFDSMNVRDV----VSWNTIITGYAQSGKIDEARQLF-----DESPVQDVFT 283
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+ MV + ++E+A EL + N V W A+L G +E+A EL +
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMP-ERNEVSWNAMLAGYVQGERMEMA----KELFDVM 338
Query: 241 P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM 287
P N ++ YA+ + +E + M KR P SW M
Sbjct: 339 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-----KRDP-VSWAAM 380
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 43/247 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD-- 58
MP RD+ SW TM++ Y+QN +A F+ M + V+ +LSA ++
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEA 207
Query: 59 ------------------LG---REIHLYVMQIGFDI----DVYIGSALVDMYAKCGSLD 93
LG ++ + + FD DV + ++ YA+ G +D
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F + +++F W +++ G + EA +FD+M E N V++ ++L+
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYV 323
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI-RSSKFQPNAVI 212
+E + F M C V + M+ ++ G + +A L + K P V
Sbjct: 324 QGERMEMAKELFDVMPC-----RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP--VS 376
Query: 213 WGALLGG 219
W A++ G
Sbjct: 377 WAAMIAG 383
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 57/261 (21%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI W I+ Y + + EAL F M V+ ++S G +L R++
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELARKL- 117
Query: 65 LYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
FD D+ + ++ Y + +L ++ +F + E+++ WN+++ G A +
Sbjct: 118 -------FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSA--------------------------CTH 154
G +A ++FDRM E N V++ ++LSA C
Sbjct: 171 GCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 226
Query: 155 AGLVE-----EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
G V+ E R+ F SM +V + ++ +++G +++A +L S Q +
Sbjct: 227 GGFVKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-D 280
Query: 210 AVIWGALLGGCKLHRNLEIAH 230
W A++ G +R +E A
Sbjct: 281 VFTWTAMVSGYIQNRMVEEAR 301
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDL 59
MP +DI++W +I+ Y QN + EAL F+E++ + +Q+T+ + LSACA +GAL+L
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH Y+ + G ++ ++ SAL+ MY+KCG L++S VF + ++++F W+++I GLA+
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +EA+ MF +M NV+PNGVTF +V AC+H GLV+E F M Y I PE +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L ++G LE A++ I + P+ +WGALLG CK+H NL +A +A L+ L
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N G LL N+YA++ +W V+++R M+ G++K PG S IE++ +++F + D
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE-PGCSSIEIDGMIHEFLSGDN 622
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP S+++Y L ++ E+LK Y PE+ +L
Sbjct: 623 AHPMSEKVYGKLHEVMEKLKSNGYEPEISQVL 654
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 34/252 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SW +MI + Q +AL+ F +M++ + VTM VLSACA + L+ GR++
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN----------------- 106
Y+ + ++++ + +A++DMY KCGS++ + +F + EK+
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314
Query: 107 --------------LFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSA 151
+ WN++I +G +EAL +F + + +N++ N +T +S LSA
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
C G +E G R S + I ++ + SK G LE + E+ S + + +
Sbjct: 375 CAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVF 432
Query: 212 IWGALLGGCKLH 223
+W A++GG +H
Sbjct: 433 VWSAMIGGLAMH 444
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 11/241 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
+P + +W T+I Y+ ++ AF +M S P++ T ++ A A + +L L
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+ +H ++ DV++ ++L+ Y CG LD + VF ++EK++ WNS+I G
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SIT 175
G +AL +F +M E+V+ + VT + VLSAC +E GR+ C Y +
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ-----VCSYIEENRVN 264
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+ M+D+ +K G +EDA L + + + N V W +L G + + E A +N
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNS 323
Query: 236 L 236
+
Sbjct: 324 M 324
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 215/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM--KNSGISPDQVTMATVLSACAHLGALD 58
MP R+++SW+ MI CY++N + EAL F EM + SP+ VTM +VL ACA L AL+
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
G+ IH Y+++ G D + + SALV MY +CG L+ VF ++ ++++ WNS+I
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
VHG+ +A+ +F+ M+ P VTF+SVL AC+H GLVEEG+R F +M + I P++
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHY CMVDLL +A L++A ++++ + +P +WG+LLG C++H N+E+A A L
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N+G LL ++YAE W EV +++ ++ G++K PG W+E+ RK+Y F + D
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK-LPGRCWMEVRRKMYSFVSVD 541
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ +P ++I++ L KL E +K Y+P+ + +L
Sbjct: 542 EFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVL 574
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 3 ARDIISWTTMITCYSQNKQFR---------EALDAFNEMKNSGISPDQVTMATVLSACA- 52
AR + T T Y N FR E L + +M G+ D+ T VL AC
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190
Query: 53 ---HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+ L G+EIH ++ + G+ VYI + LVDMYA+ G +D + VF + +N+
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVE--PNGVTFISVLSACTHAGLVEEGR----- 162
W+++I A +G A EAL F M+ E + PN VT +SVL AC +E+G+
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310
Query: 163 --RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
RR L SI P + +V + + G LE + + + V W +L+
Sbjct: 311 ILRRGLD-----SILPVIS---ALVTMYGRCGKLEVG-QRVFDRMHDRDVVSWNSLISSY 361
Query: 221 KLH 223
+H
Sbjct: 362 GVH 364
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
IS +I + + ++A+ ++ SP Q T ++ C H +L +H +
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D D ++ + L+ MY+ GS+D + VF K R++ ++ WN++ L + G E
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 127 LAMFDRMIYENVEPNGVTFISVLSAC 152
L ++ +M VE + T+ VL AC
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKAC 188
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 213/321 (66%), Gaps = 3/321 (0%)
Query: 1 MP--ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD 58
MP R+ +SWT +I+ Y+++ + EA++ F M + PD+VT+ VLSACA LG+L+
Sbjct: 208 MPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLE 267
Query: 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
LG I YV G + V + +A++DMYAK G++ ++L VF + E+N+ W +II GLA
Sbjct: 268 LGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLA 327
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EALAMF+RM+ V PN VTFI++LSAC+H G V+ G+R F SM Y I P +
Sbjct: 328 THGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNI 387
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +AG L +A E+I+S F+ NA IWG+LL +H +LE+ A++EL+
Sbjct: 388 EHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIK 447
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEPNNSG LL N+Y+ + RW E +R MK +G+ K+ G S IE+E +VY+F + D
Sbjct: 448 LEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGV-KKMAGESSIEVENRVYKFISGD 506
Query: 299 KSHPASDEIYSSLSKLDEQLK 319
+HP + I+ L ++D Q++
Sbjct: 507 LTHPQVERIHEILQEMDLQIQ 527
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 108/256 (42%), Gaps = 55/256 (21%)
Query: 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD----- 93
PD T VL + + GR+IH V+ GFD V++ + L+ MY CG L
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKM 173
Query: 94 ----------------------------RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
RSLL +N W +I G A G A E
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG--- 182
A+ +F RM+ ENVEP+ VT ++VLSAC G +E G R C Y V+H G
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGER-----ICSY-----VDHRGMNR 283
Query: 183 ------CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
++D+ +K+G + AL++ + N V W ++ G H + A N +
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 237 MI--LEPNNSGYCTLL 250
+ + PN+ + +L
Sbjct: 343 VKAGVRPNDVTFIAIL 358
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 293 bits (751), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 213/325 (65%), Gaps = 1/325 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++SW TMI+ YS N F++A++ F EMK I P+ VT+ +VL A + LG+L+LG
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+HLY G ID +GSAL+DMY+KCG +++++ VF +L +N+ W+++I G A+H
Sbjct: 294 EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIH 353
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A +A+ F +M V P+ V +I++L+AC+H GLVEEGRR F M + P +EH
Sbjct: 354 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEH 413
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDLL ++GLL++A E I + +P+ VIW ALLG C++ N+E+ N LM +
Sbjct: 414 YGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMV 473
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG L NMYA W+EV+++R+ MKE I K PG S I+++ +++F D S
Sbjct: 474 PHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD-PGCSLIDIDGVLHEFVVEDDS 532
Query: 301 HPASDEIYSSLSKLDEQLKLASYVP 325
HP + EI S L ++ ++L+LA Y P
Sbjct: 533 HPKAKEINSMLVEISDKLRLAGYRP 557
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 52/272 (19%)
Query: 1 MPARDIISWTTMITCYSQNKQFRE--ALDAFNEM-KNSGISPDQVTMATVLSACAHLGAL 57
MP R+ SW T+I +S++ + + A+ F EM + + P++ T +VL ACA G +
Sbjct: 85 MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFF----------------- 100
G++IH ++ GF D ++ S LV MY CG + + ++F+
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 101 ----------------------------KLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
K+R++++ WN++I G +++GF +A+ +F
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 133 MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGCMVDLLSKA 191
M ++ PN VT +SVL A + G +E G L + G I + ++D+ SK
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG--SALIDMYSKC 322
Query: 192 GLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
G++E A+ + + N + W A++ G +H
Sbjct: 323 GIIEKAIHVFERLP-RENVITWSAMINGFAIH 353
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 21/157 (13%)
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM---FDRMIYENVEPNGVTFIS 147
LD + +F ++ ++N F WN+II G + +A+ ++ M E VEPN TF S
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 148 VLSACTHAGLVEEGRR-RFLSMTCGYS-----ITPEVEHY---GCMVD---LLSKAGLLE 195
VL AC G ++EG++ L++ G+ ++ V Y G M D L K + +
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 196 DALELIRSSKFQPNAVIWGAL------LGGCKLHRNL 226
D + + K V+W + LG CK R L
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARML 230
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 293 bits (751), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D+++W ++I +++N + EAL + EM + GI PD T+ ++LSACA +GAL LG
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H+Y++++G +++ + L+D+YA+CG ++ + +F ++ +KN W S+I GLAV+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
GF EA+ +F M E + P +TF+ +L AC+H G+V+EG F M Y I P +E
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
H+GCMVDLL++AG ++ A E I+S QPN VIW LLG C +H + ++A A +++ L
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL 421
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EPN+SG LL NMYA RW++V KIR M G+ K+ PG S +E+ +V++F DK
Sbjct: 422 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV-KKVPGHSLVEVGNRVHEFLMGDK 480
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPEL 327
SHP SD IY+ L ++ +L+ YVP++
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDLGREI 63
++ W T+I Y++ A + EM+ SG + PD T ++ A + + LG I
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V++ GF +Y+ ++L+ +YA CG + + VF K+ EK+L WNS+I G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EALA++ M + ++P+G T +S+LSAC G + G+R + M +T +
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-KVGLTRNLHSSNV 262
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++DL ++ G +E+A L N+V W +L+ G
Sbjct: 263 LLDLYARCGRVEEAKTLF-DEMVDKNSVSWTSLIVG 297
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 293 bits (750), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 212/327 (64%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ RDI+SW +MIT +Q+ A+D F +M SGI D V+++ LSACA+L + G
Sbjct: 502 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFG 561
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH ++++ DVY S L+DMYAKCG+L ++ VF ++EKN+ WNSII H
Sbjct: 562 KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNH 621
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G ++L +F M+ ++ + P+ +TF+ ++S+C H G V+EG R F SMT Y I P+ E
Sbjct: 622 GKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQE 681
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VDL +AG L +A E ++S F P+A +WG LLG C+LH+N+E+A +A ++LM L
Sbjct: 682 HYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL 741
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
+P+NSGY L+ N +A W VTK+R MKE ++K PG SWIE+ ++ + F + D
Sbjct: 742 DPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQK-IPGYSWIEINKRTHLFVSGDV 800
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP S IYS L+ L +L+L Y+P+
Sbjct: 801 NHPESSHIYSLLNSLLGELRLEGYIPQ 827
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D++ +T MI+ Y N + ++L+ F + ISP+++T+ ++L L AL LGRE+H
Sbjct: 405 DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH 464
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
++++ GFD IG A++DMYAKCG ++ + +F +L ++++ WNS+I A
Sbjct: 465 GFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPS 524
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL-SMTCGYSITPEVEHYGC 183
A+ +F +M + + V+ + LSAC A L E + + +S+ +V
Sbjct: 525 AAIDIFRQMGVSGICYDCVSISAALSAC--ANLPSESFGKAIHGFMIKHSLASDVYSEST 582
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
++D+ +K G L+ A+ + ++ K + N V W +++ C H L+
Sbjct: 583 LIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLK 625
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D ++W MI+ Y Q+ E+L F EM +SG+ PD +T +++L + + L+
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+M+ +D+++ SAL+D Y KC + + +F + ++ + ++I G +
Sbjct: 360 KQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN 419
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE- 179
G ++L MF ++ + PN +T +S+L ++ GR G+ I +
Sbjct: 420 GLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH-----GFIIKKGFDN 474
Query: 180 --HYGC-MVDLLSKAGLLEDALELI-RSSKFQPNAVIWGALLGGCKLHRN 225
+ GC ++D+ +K G + A E+ R SK + V W +++ C N
Sbjct: 475 RCNIGCAVIDMYAKCGRMNLAYEIFERLSK--RDIVSWNSMITRCAQSDN 522
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D + W M+ Y++ + F+ M+ ISP+ VT VLS CA +DLG ++
Sbjct: 202 KDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL 261
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V+ G D + I ++L+ MY+KCG D + +F + + WN +I G G
Sbjct: 262 HGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLM 321
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACT 153
E+L F MI V P+ +TF S+L + +
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 4/215 (1%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
I W ++I+ + +N +AL + +M G+SPD T ++ AC L +
Sbjct: 103 IRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSD 162
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
V +G D + ++ S+L+ Y + G +D +F ++ +K+ WN ++ G A G
Sbjct: 163 TVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDS 222
Query: 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMTCGYSITPEVEHYGCM 184
+ F M + + PN VTF VLS C L++ G + L + G +++ +
Sbjct: 223 VIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN--SL 280
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + SK G +DA +L R + + V W ++ G
Sbjct: 281 LSMYSKCGRFDDASKLFRMMS-RADTVTWNCMISG 314
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 114/260 (43%), Gaps = 38/260 (14%)
Query: 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL- 102
++ +L AC++ L G+++H +++ D Y ++ MYA CGS +F++L
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 103 -REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH------- 154
R ++ WNSII +G ++ALA + +M+ V P+ TF ++ AC
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157
Query: 155 -----------------------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191
+E G+ S + + + M++ +K
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217
Query: 192 GLLEDALE---LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN--SGY 246
G L+ ++ ++R + PNAV + +L C +++ + ++ L+++ +
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLG-VQLHGLVVVSGVDFEGSI 276
Query: 247 CTLLLNMYAEVSRWAEVTKI 266
LL+MY++ R+ + +K+
Sbjct: 277 KNSLLSMYSKCGRFDDASKL 296
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 291 bits (746), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 216/327 (66%), Gaps = 1/327 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++SWT++I +QN + EAL+ F EM+ +G+ P+ VT+ ++L AC ++ AL GR H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
+ +++ +V++GSAL+DMYAKCG ++ S +VF + KNL CWNS++ G ++HG A
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
E +++F+ ++ ++P+ ++F S+LSAC GL +EG + F M+ Y I P +EHY CM
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244
V+LL +AG L++A +LI+ F+P++ +WGALL C+L N+++A IA +L LEP N
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPAS 304
G LL N+YA W EV IR M+ LG++K PG SWI+++ +VY A DKSHP
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKN-PGCSWIQVKNRVYTLLAGDKSHPQI 650
Query: 305 DEIYSSLSKLDEQLKLASYVPELEAML 331
D+I + ++ ++++ + + P L+ L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNLDFAL 677
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 49/316 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I+SW +++ ++++ +EA+ F ++ + G PDQVT+++VL + L++GR IH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-------------------------------D 93
YV++ G D + SA++DMY K G + D
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 94 RSLLVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
++L +F +E+ N+ W SII G A +G EAL +F M V+PN VT S+L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEV---EHYG-CMVDLLSKAGLLEDALELIRSSK 205
AC + + GR T G+++ + H G ++D+ +K G + + +++ +
Sbjct: 396 PACGNIAALGHGRS-----THGFAVRVHLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMM 449
Query: 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELM--ILEPNNSGYCTLLLNMYAEVSRWAEV 263
N V W +L+ G +H + LM L+P+ + T LL+ +V E
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF-TSLLSACGQVGLTDEG 508
Query: 264 TK-IRVAMKELGIEKR 278
K ++ +E GI+ R
Sbjct: 509 WKYFKMMSEEYGIKPR 524
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 82/318 (25%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P I S++++I ++ K F +++ F+ M + G+ PD + + CA L A +G
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------------- 105
++IH G D+D ++ ++ MY +CG + + VF ++ +K
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195
Query: 106 --------------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
N+ WN I+ G G+ EA+ MF ++ + P+ VT
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 146 ISVLSACTHAGLVEEGR--------RRFLSMTCGYSITPEVEHYG--------------- 182
SVL + + ++ GR + L C I+ ++ YG
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKC--VISAMIDMYGKSGHVYGIISLFNQF 313
Query: 183 ---------CMVDLLSKAGLLEDAL---ELIRSSKFQPNAVIWGALLGGC---------- 220
+ LS+ GL++ AL EL + + N V W +++ GC
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEAL 373
Query: 221 KLHRNLEIAHIAVNELMI 238
+L R +++A + N + I
Sbjct: 374 ELFREMQVAGVKPNHVTI 391
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP ++++ W +++ +S + + +E + F + + + PD ++ ++LSAC +G D G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95
+ + + G + S +V++ + G L +
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 210/331 (63%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ISWTTMI+ Y Q +EAL F+EM+NS + PD V++A LSACA LGAL+ G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH Y+ + +D +G L+DMYAKCG ++ +L VF +++K++ W ++I G A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA++ F M ++PN +TF +VL+AC++ GLVEEG+ F SM Y++ P +EH
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL +AGLL++A I+ +PNAVIWGALL C++H+N+E+ L+ ++
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 446
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G N++A +W + + R MKE G+ K PG S I +E ++F A D+S
Sbjct: 447 PYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK-VPGCSTISLEGTTHEFLAGDRS 505
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP ++I S + +L+ YVPELE ML
Sbjct: 506 HPEIEKIQSKWRIMRRKLEENGYVPELEEML 536
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 39/253 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D W MI +S + + +L + M S + T ++L AC++L A + +IH
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA------ 118
+ ++G++ DVY ++L++ YA G+ + L+F ++ E + WNS+I+G
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 119 --------------------VHGFAH-----EALAMFDRMIYENVEPNGVTFISVLSACT 153
+ G+ EAL +F M +VEP+ V+ + LSAC
Sbjct: 199 IALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACA 258
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSKFQPNA 210
G +E+G+ +L+ T I + GC ++D+ +K G +E+ALE+ ++ K + +
Sbjct: 259 QLGALEQGKWIHSYLNKT---RIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSV 313
Query: 211 VIWGALLGGCKLH 223
W AL+ G H
Sbjct: 314 QAWTALISGYAYH 326
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD---RSLLVFFKLREKNLFCWNSIIEGL 117
++IH +++ G D Y + + S D + +VF + F WN +I G
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-----------HAGLVEEGRRRFL 166
+ +L ++ RM+ + N TF S+L AC+ HA + + G +
Sbjct: 91 SCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDV 150
Query: 167 ----SMTCGYSIT---------------PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207
S+ Y++T P+ + ++ KAG ++ AL L R +
Sbjct: 151 YAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA-E 209
Query: 208 PNAVIWGALLGG 219
NA+ W ++ G
Sbjct: 210 KNAISWTTMISG 221
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 288 bits (736), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 217/331 (65%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ISWT MI Y + F E+L+ F EM+++G+ PD+ TM +VL+ACAHLG+L++G
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ + DV +G+AL+DMY KCG +++ VF + +++ F W +++ GLA +
Sbjct: 388 EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANN 447
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F +M +++P+ +T++ VLSAC H+G+V++ R+ F M + I P + H
Sbjct: 448 GQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVD+L +AGL+++A E++R PN+++WGALLG +LH + +A +A +++ LE
Sbjct: 508 YGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N LL N+YA RW ++ ++R + ++ I K+ PG S IE+ ++F A DKS
Sbjct: 568 PDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI-KKTPGFSLIEVNGFAHEFVAGDKS 626
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
H S+EIY L +L ++ A+Y+P+ +L
Sbjct: 627 HLQSEEIYMKLEELAQESTFAAYLPDTSELL 657
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 37/248 (14%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW MI+ Y++ K++ E+++ EM+ + +SP VT+ VLSAC+ + DL + +H
Sbjct: 200 DVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
YV + + + + +ALV+ YA CG +D ++ +F ++ +++ W SI++G G
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLK 319
Query: 125 EALAMFDRM--------------------------IYENVE-----PNGVTFISVLSACT 153
A FD+M I+ ++ P+ T +SVL+AC
Sbjct: 320 LARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACA 379
Query: 154 HAGLVEEGR--RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
H G +E G + ++ I +V ++D+ K G E A ++ Q +
Sbjct: 380 HLGSLEIGEWIKTYIDKN---KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKF 435
Query: 212 IWGALLGG 219
W A++ G
Sbjct: 436 TWTAMVVG 443
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 134/276 (48%), Gaps = 6/276 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDL 59
+P D++ W MI +S+ E + + M G++PD T +L+ G AL
Sbjct: 94 IPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALAC 153
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+++H +V++ G ++Y+ +ALV MY+ CG +D + VF + ++++F WN +I G
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
E++ + M V P VT + VLSAC+ ++ +R P +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHEYVSECKTEPSLR 272
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
+V+ + G ++ A+ + RS K + + + W +++ G NL++A +++ +
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275
+ + T++++ Y + E +I M+ G+
Sbjct: 332 DRIS---WTIMIDGYLRAGCFNESLEIFREMQSAGM 364
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
G + + +F K+ E ++ WN++I+G + E + ++ M+ E V P+ TF +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195
+ GL +G ++ CG + V +G +L + L++
Sbjct: 142 N-----GLKRDGG----ALACGKKLHCHVVKFGLGSNLYVQNALVK 178
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 208/328 (63%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++W++M+ Y QNK + EAL + + + +Q T+++V+ AC++L AL G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H + + GF +V++ S+ VDMYAKCGSL S ++F +++EKNL WN+II G A H
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
E + +F++M + + PN VTF S+LS C H GLVEEGRR F M Y ++P V H
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVH 402
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVD+L +AGLL +A ELI+S F P A IWG+LL C++++NLE+A +A +L LE
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 462
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G LL N+YA +W E+ K R +++ + K+ G SWI+++ KV+ F+ +
Sbjct: 463 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDV-KKVRGKSWIDIKDKVHTFSVGESG 521
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP EI S+L L + + Y P +E
Sbjct: 522 HPRIREICSTLDNLVIKFRKFGYKPSVE 549
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDL 59
M R ++SW TMI Y++N+ EALD F EM+N G + T+++VLSAC + AL+
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+++H ++ D+++Y+G+AL+D+YAKCG + ++ VF +++K+ W+S++ G
Sbjct: 182 -KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQ 240
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ EAL ++ R ++E N T SV+ AC++ + EG ++ ++ C V
Sbjct: 241 NKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVF 299
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI- 238
VD+ +K G L ++ +I S + N +W ++ G H + I ++
Sbjct: 300 VASSAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQD 358
Query: 239 -LEPNNSGYCTLL 250
+ PN + +LL
Sbjct: 359 GMHPNEVTFSSLL 371
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106
+L CA GA+ + H +++I + DV + + L++ Y+KCG ++ + VF + E++
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC-THAGLVEEGRRRF 165
L WN++I + EAL +F M E + + T SVLSAC + +E +
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 166 LSM-TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR 224
LS+ TC I + ++DL +K G+++DA+++ S + ++V W +++ G ++
Sbjct: 187 LSVKTC---IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQNK 242
Query: 225 NLEIA 229
N E A
Sbjct: 243 NYEEA 247
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 215/335 (64%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS---GISPDQVTMATVLSACAHLGAL 57
+P RD +SW + +CY +NK+ R+ L F++MKN + PD VT L ACA+LGAL
Sbjct: 174 IPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGAL 233
Query: 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
D G+++H ++ + G + + + LV MY++CGS+D++ VF+ +RE+N+ W ++I GL
Sbjct: 234 DFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGL 293
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITP 176
A++GF EA+ F+ M+ + P T +LSAC+H+GLV EG F M G + I P
Sbjct: 294 AMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKP 353
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+ HYGC+VDLL +A LL+ A LI+S + +P++ IW LLG C++H ++E+ ++ L
Sbjct: 354 NLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHL 413
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ L+ +G LLLN Y+ V +W +VT++R MKE I + PG S IE++ V++F
Sbjct: 414 IELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTK-PGCSAIELQGTVHEFIV 472
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D SHP +EIY L+++++QLK+A YV E+ + L
Sbjct: 473 DDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSEL 507
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 10/234 (4%)
Query: 10 TTMITCYSQNKQFREALDAFNEMK-NSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
TMI +S ++ E F ++ NS + + ++ + L C G L G +IH +
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIF 140
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
GF D + + L+D+Y+ C + + VF ++ +++ WN + + + L
Sbjct: 141 SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLV 200
Query: 129 MFDRM---IYENVEPNGVTFISVLSACTHAGLVEEGRR--RFLSMTCGYSITPEVEHYGC 183
+FD+M + V+P+GVT + L AC + G ++ G++ F+ ++ +
Sbjct: 201 LFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDEN---GLSGALNLSNT 257
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+V + S+ G ++ A ++ + + N V W AL+ G ++ + A A NE++
Sbjct: 258 LVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAMNGFGKEAIEAFNEML 310
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 204/325 (62%), Gaps = 7/325 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +I Y+QN + EAL F +K + P + A +L ACA L L LG
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 61 REIHLYVMQIGFDI------DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114
+ H++V++ GF D+++G++L+DMY KCG ++ LVF K+ E++ WN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174
G A +G+ +EAL +F M+ +P+ +T I VLSAC HAG VEEGR F SMT + +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234
P +HY CMVDLL +AG LE+A +I QP++VIWG+LL CK+HRN+ +
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQF 294
+L+ +EP+NSG LL NMYAE+ +W +V +R +M++ G+ K+ PG SWI+++ + F
Sbjct: 586 KLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQ-PGCSWIKIQGHDHVF 644
Query: 295 AASDKSHPASDEIYSSLSKLDEQLK 319
DKSHP +I+S L L +++
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEMR 669
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 114/197 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD +W +M++ ++Q+ + EAL F M G ++ + A+VLSAC+ L ++ G
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG 171
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + + F DVYIGSALVDMY+KCG+++ + VF ++ ++N+ WNS+I +
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EAL +F M+ VEP+ VT SV+SAC ++ G+ + + ++
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 181 YGCMVDLLSKAGLLEDA 197
VD+ +K +++A
Sbjct: 292 SNAFVDMYAKCSRIKEA 308
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 38/256 (14%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW ++ITC+ QN EALD F M S + PD+VT+A+V+SACA L A+ +G
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272
Query: 61 REIHLYVMQIG-FDIDVYIGSALVDMYAKC------------------------------ 89
+E+H V++ D+ + +A VDMYAKC
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332
Query: 90 -GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
S + L+F K+ E+N+ WN++I G +G EAL++F + E+V P +F ++
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392
Query: 149 LSACTHAGLVEEGRRRFLS-MTCGYSITPEVEHY----GCMVDLLSKAGLLEDALELIRS 203
L AC + G + + + G+ E ++D+ K G +E+ + R
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR- 451
Query: 204 SKFQPNAVIWGALLGG 219
+ + V W A++ G
Sbjct: 452 KMMERDCVSWNAMIIG 467
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 36/211 (17%)
Query: 40 DQVTMATVLSAC--AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97
D A +L +C + L A+ + R +H V++ GF +++I + L+D Y+KCGSL+
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76
Query: 98 VFFKLREKNLFCWNSIIEGLA--------------------------VHGFAH-----EA 126
VF K+ ++N++ WNS++ GL V GFA EA
Sbjct: 77 VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L F M E N +F SVLSAC+ + +G + S+ +V +VD
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKG-VQVHSLIAKSPFLSDVYIGSALVD 195
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+ SK G + DA + + N V W +L+
Sbjct: 196 MYSKCGNVNDA-QRVFDEMGDRNVVSWNSLI 225
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 283 bits (725), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 211/328 (64%), Gaps = 1/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +DI++W+TMI Y+ N +E ++ F +M + PDQ ++ LS+CA LGALDLG
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ + F ++++ +AL+DMYAKCG++ R VF +++EK++ N+ I GLA +
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G + A+F + + P+G TF+ +L C HAGL+++G R F +++C Y++ VEH
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG+L+DA LI +PNA++WGALL GC+L ++ ++A + EL+ LE
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N+G L N+Y+ RW E ++R M + G+ K+ PG SWIE+E KV++F A DKS
Sbjct: 513 PWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGM-KKIPGYSWIELEGKVHEFLADDKS 571
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELE 328
HP SD+IY+ L L +++L +VP E
Sbjct: 572 HPLSDKIYAKLEDLGNEMRLMGFVPTTE 599
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 136/252 (53%), Gaps = 4/252 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R +++WT + + Y+ + + REA+D F +M G+ PD + VLSAC H+G LD G
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
I Y+ ++ + ++ + LV++YAKCG ++++ VF + EK++ W+++I+G A +
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
F E + +F +M+ EN++P+ + + LS+C G ++ G +S+ + +
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG-ISLIDRHEFLTNLFM 350
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL--HRNLEIAHIAVNELMI 238
++D+ +K G + E+ + K + + VI A + G H L A E +
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409
Query: 239 LEPNNSGYCTLL 250
+ P+ S + LL
Sbjct: 410 ISPDGSTFLGLL 421
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+I + ++I + N F E LD F ++ G+ T VL AC + LG ++H
Sbjct: 75 NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLH 134
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
V++ GF+ DV ++L+ +Y+ G L+ + +F ++ ++++ W ++ G G
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHR 194
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-- 182
EA+ +F +M+ V+P+ + VLSAC H G ++ G Y E++
Sbjct: 195 EAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGE-----WIVKYMEEMEMQKNSFV 249
Query: 183 --CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+V+L +K G +E A + S + + V W ++ G
Sbjct: 250 RTTLVNLYAKCGKMEKARSVF-DSMVEKDIVTWSTMIQG 287
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102
T+ +V HL ++IH+ ++ D ++ + L+ S L+F
Sbjct: 18 TLISVACTVNHL------KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHT 71
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG- 161
+ N+F +NS+I G + HE L +F + + +G TF VL ACT A + G
Sbjct: 72 QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131
Query: 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
L + CG++ +V ++ + S +G L DA +L + V W AL G
Sbjct: 132 DLHSLVVKCGFN--HDVAAMTSLLSIYSGSGRLNDAHKLFDEIP-DRSVVTWTALFSG 186
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 283 bits (725), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 214/331 (64%), Gaps = 3/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D I W ++I ++QN + AL+ F MK +G +Q T+ +VL AC L L+LG
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ H+++++ +D D+ + +ALVDMY KCGSL+ +L VF +++E+++ W+++I GLA +
Sbjct: 280 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G++ EAL +F+RM +PN +T + VL AC+HAGL+E+G F SM Y I P EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCM+DLL KAG L+DA++L+ + +P+AV W LLG C++ RN+ +A A +++ L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P ++G TLL N+YA +W V +IR M++ GI+K PG SWIE+ ++++ F D S
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKE-PGCSWIEVNKQIHAFIIGDNS 516
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP E+ L++L +L YVPE +L
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVL 547
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ISWTTMI+ YS+ K ++AL+ M + P+ T ++VL +C + +
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV--- 178
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H +++ G + DV++ SAL+D++AK G + +L VF ++ + WNSII G A +
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+ AL +F RM T SVL ACT L+E G + + + ++
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV---KYDQDLIL 295
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+VD+ K G LEDAL + K + + + W ++ G
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 15 CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI--HLYVMQIGF 72
CY ++ A+ A + +++ G+ D T + ++ C A+ G I HLY G
Sbjct: 37 CYQRD--LPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFN--GH 92
Query: 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDR 132
+++ + L++MY K L+ + +F ++ ++N+ W ++I + +AL +
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 133 MIYENVEPNGVTFISVLSACT--------HAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
M+ +NV PN T+ SVL +C H G+++EG + +V +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------------LESDVFVRSAL 200
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+D+ +K G EDAL + +A++W +++GG
Sbjct: 201 IDVFAKLGEPEDALSVF-DEMVTGDAIVWNSIIGG 234
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 280 bits (717), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 209/323 (64%), Gaps = 1/323 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD I+W MI+ Y+Q + REAL+ F+ M+ G+ + V M +VLSAC LGALD G
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R H Y+ + I V + + LVD+YAKCG +++++ VF+ + EKN++ W+S + GLA++
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF + L +F M + V PN VTF+SVL C+ G V+EG+R F SM + I P++EH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDL ++AG LEDA+ +I+ +P+A +W +LL ++++NLE+ +A +++ LE
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N G LL N+YA+ + W V+ +R +MK G+ K+ PG S +E+ +V++F DKS
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQ-PGCSVMEVNGEVHEFFVGDKS 498
Query: 301 HPASDEIYSSLSKLDEQLKLASY 323
HP +I + + +L+LA Y
Sbjct: 499 HPKYTQIDAVWKDISRRLRLAGY 521
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 49/254 (19%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDLGREI 63
+ + +MI + ++ ++ D + + +SG + PD T+ ++ AC L + G ++
Sbjct: 71 LFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQV 130
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLD----------------RSLLV--------- 98
H ++ GFD D ++ + L+ +YA+ G LD R+ +V
Sbjct: 131 HGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV 190
Query: 99 ------FFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
F + E++ WN++I G A G + EAL +F M E V+ NGV ISVLSAC
Sbjct: 191 VFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSAC 250
Query: 153 THAGLVEEGR-------RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205
T G +++GR R + +T + T +VDL +K G +E A+E+ +
Sbjct: 251 TQLGALDQGRWAHSYIERNKIKITVRLATT--------LVDLYAKCGDMEKAMEVFWGME 302
Query: 206 FQPNAVIWGALLGG 219
+ N W + L G
Sbjct: 303 -EKNVYTWSSALNG 315
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 280 bits (716), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 215/334 (64%), Gaps = 5/334 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+++WT M+T ++QN + +EAL+ F+ M+ SGI D+VT+A +SACA LGA
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 61 REIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ G+ V IGSAL+DMY+KCG+++ ++ VF + KN+F ++S+I GLA
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLA 360
Query: 119 VHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177
HG A EAL +F M+ + ++PN VTF+ L AC+H+GLV++GR+ F SM + + P
Sbjct: 361 THGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPT 420
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+HY CMVDLL + G L++ALELI++ +P+ +WGALLG C++H N EIA IA L
Sbjct: 421 RDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLF 480
Query: 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSW-IEMERKVYQFAA 296
LEP+ G LL N+YA W V ++R +KE G+ K+ P SW ++ ++++F
Sbjct: 481 ELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL-KKTPAVSWVVDKNGQMHKFFP 539
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330
+ +HP S++I L +L E+L + Y P+L ++
Sbjct: 540 GNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSV 573
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 125/284 (44%), Gaps = 38/284 (13%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
R+ WT +I Y+ +F EA+ + M+ I+P T + +L AC + L+LGR+
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H ++ VY+G+ ++DMY KC S+D + VF ++ E+++ W +I A
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231
Query: 119 ---------------------VHGFA-----HEALAMFDRMIYENVEPNGVTFISVLSAC 152
V GFA EAL FDRM + + VT +SAC
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 291
Query: 153 THAGLVEEGRRRF-LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAV 211
G + R ++ GYS + V ++D+ SK G +E+A+ + S N
Sbjct: 292 AQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-NKNVF 350
Query: 212 IWGALLGGCKLH----RNLEIAHIAVNELMILEPNNSGYCTLLL 251
+ +++ G H L + H V + I +PN + L+
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEI-KPNTVTFVGALM 393
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-SLDR-SLLVFF 100
++ + L C +L + ++IH +V++ G D YI + L+ K G +D + V
Sbjct: 51 SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
++ +N F W ++I G A+ G EA+AM+ M E + P TF ++L AC +
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 161 GRR 163
GR+
Sbjct: 168 GRQ 170
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 280 bits (715), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 203/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ISW +++ Y QN ++ EAL F +M + + P V ++V+ ACAHL L LG+++
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H YV++ GF +++I SALVDMY+KCG++ + +F ++ + W +II G A+HG
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
HEA+++F+ M + V+PN V F++VL+AC+H GLV+E F SMT Y + E+EHY
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+ DLL +AG LE+A I +P +W LL C +H+NLE+A ++ ++ N
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
G L+ NMYA RW E+ K+R+ M++ G+ K+ P SWIEM+ K + F + D+SHP+
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK-PACSWIEMKNKTHGFVSGDRSHPS 604
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
D+I L + EQ++ YV + +L
Sbjct: 605 MDKINEFLKAVMEQMEKEGYVADTSGVL 632
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP +D++S+ T+I Y+Q+ + +AL EM + + PD T+++VL + + G
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH YV++ G D DVYIGS+LVDMYAK ++ S VF +L ++ WNS++ G +
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +EAL +F +M+ V+P V F SV+ AC H + G++ + G +
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSNIFI 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ SK G ++ A ++ + V W A++ G LH
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVL-DEVSWTAIIMGHALH 422
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 38/250 (15%)
Query: 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
+++W ++I C++ F +AL +F EM+ SG PD +VL +C + L G +H
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 66 YVMQIGFDIDVYIGSALVDMYAKC---GS------------------------------- 91
+++++G D D+Y G+AL++MYAK GS
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 92 --LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+D VF + K++ +N+II G A G +AL M M +++P+ T SVL
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209
+ V +G + I +V +VD+ +K+ +ED+ E + S + +
Sbjct: 250 PIFSEYVDVIKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS-ERVFSRLYCRD 307
Query: 210 AVIWGALLGG 219
+ W +L+ G
Sbjct: 308 GISWNSLVAG 317
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D +SWT +I ++ + EA+ F EMK G+ P+QV VL+AC+H+G +D
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463
Query: 61 REIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
+ ++ G + ++ +A+ D+ + G L+ + K+ E W++++ +
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523
Query: 119 VH 120
VH
Sbjct: 524 VH 525
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 278 bits (711), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 209/322 (64%), Gaps = 2/322 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
MP +++ SWTT+I+ +SQN + EAL F M K+ + P+ +T+ +VL ACA+LG L++
Sbjct: 174 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 233
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSIIEGLA 118
GR + Y + GF ++Y+ +A ++MY+KCG +D + +F +L ++NL WNS+I LA
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG EAL +F +M+ E +P+ VTF+ +L AC H G+V +G+ F SM + I+P++
Sbjct: 294 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKL 353
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL + G L++A +LI++ +P+AV+WG LLG C H N+EIA IA L
Sbjct: 354 EHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFK 413
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
LEP N G C ++ N+YA +W V ++R MK+ + K S ++E+ V++F D
Sbjct: 414 LEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVED 473
Query: 299 KSHPASDEIYSSLSKLDEQLKL 320
KSHP S EIY L ++ ++KL
Sbjct: 474 KSHPRSYEIYQVLEEIFRRMKL 495
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ +I Y + Q E++ +N + G+ P T + +A A + R +H
Sbjct: 50 YNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFF 109
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF+ D + + L+ YAK G+L + VF ++ ++++ WN++I G G A+
Sbjct: 110 RSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAME 169
Query: 129 MFDRMIYEN--------------------------------VEPNGVTFISVLSACTHAG 156
+FD M +N V+PN +T +SVL AC + G
Sbjct: 170 LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLG 229
Query: 157 LVEEGRRRFLSMTCGYS----ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+E GRR GY+ + +++ SK G+++ A L Q N
Sbjct: 230 ELEIGRR-----LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCS 284
Query: 213 WGALLGGCKLH 223
W +++G H
Sbjct: 285 WNSMIGSLATH 295
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 278 bits (711), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++SW MI Y +N EA++ ++ M+ G PD V++ +VL AC AL LG
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++IH Y+ + ++ + +AL+DMYAKCG L+++ VF ++ +++ W ++I
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G +A+A+F ++ + P+ + F++ L+AC+HAGL+EEGR F MT Y ITP +EH
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
CMVDLL +AG +++A I+ +PN +WGALLG C++H + +I +A ++L L
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P SGY LL N+YA+ RW EVT IR MK G++K PG+S +E+ R ++ F D+S
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN-PGASNVEVNRIIHTFLVGDRS 567
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP SDEIY L L +++K YVP+ E+ L
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESAL 598
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 29/271 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R++I MI Y N + E + F M + PD T VL AC+ G + +G
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG 159
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH ++G +++G+ LV MY KCG L + LV ++ +++ WNS++ G A +
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQN 219
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEV 178
+AL + M + + T S+L A ++ V + F M +
Sbjct: 220 QRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG-----KKSL 274
Query: 179 EHYGCMVDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLGGC----------KLHRN 225
+ M+ + K + +A+EL + + F+P+AV ++L C K+H
Sbjct: 275 VSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGY 334
Query: 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
+E + N ++LE L++MYA+
Sbjct: 335 IERKKLIPN--LLLE-------NALIDMYAK 356
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ + +G L+ YA + + VF ++ E+N+ N +I +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF E + +F M NV P+ TF VL AC+ +G + GR+ S T G S T V
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ +V + K G L +A L+ + + V W +L+ G
Sbjct: 179 N--GLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLVVG 215
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 203/316 (64%), Gaps = 1/316 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+PA+++++WT +I Y++ +EA ++M SG+ D + ++L+AC G L LG
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLG 334
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH + + + Y+ +AL+DMYAKCG+L ++ VF + +K+L WN+++ GL VH
Sbjct: 335 MRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVH 394
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA+ +F RM E + P+ VTFI+VL +C HAGL++EG F SM Y + P+VEH
Sbjct: 395 GHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH 454
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VDLL + G L++A++++++ +PN VIWGALLG C++H ++IA ++ L+ L+
Sbjct: 455 YGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 514
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G +LL N+YA W V IR MK +G+EK G+S +E+E +++F DKS
Sbjct: 515 PCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPS-GASSVELEDGIHEFTVFDKS 573
Query: 301 HPASDEIYSSLSKLDE 316
HP SD+IY L L E
Sbjct: 574 HPKSDQIYQMLGSLIE 589
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 54/289 (18%)
Query: 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69
++I ++QN Q +A F+EM+ G+ D T +L AC+ L + + +H ++ +
Sbjct: 86 NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145
Query: 70 IGFDIDVYIGSALVDMYAKCGSLD--RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+G D+Y+ +AL+D Y++CG L ++ +F K+ E++ WNS++ GL G +A
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 128 AMFDRM--------------------------IYENV-EPNGVTFISVLSACTHAGLVEE 160
+FD M ++E + E N V++ +++ + AG +E
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEM 265
Query: 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-----KFQPNAVI--- 212
R F M V + ++ ++ GLL++A L+ KF AVI
Sbjct: 266 ARVMFDKMPLP---AKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 213 -----WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256
G L G ++H L+ +++ N ++ LL+MYA+
Sbjct: 323 AACTESGLLSLGMRIHSILKRSNLGSNAYVL---------NALLDMYAK 362
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +SW +M+ + + R+A F+EM D ++ T+L A +
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQR----DLISWNTMLDGYARCREMSKA 235
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LREKNLFCWNSIIEGLA 118
E+ + + + S +V Y+K G ++ + ++F K L KN+ W II G A
Sbjct: 236 FEL----FEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G EA + D+M+ ++ + IS+L+ACT +GL+ G R S+ ++
Sbjct: 292 EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLG-MRIHSILKRSNLGSNA 350
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++D+ +K G L+ A ++ + + V W +L G +H
Sbjct: 351 YVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVH 394
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL 107
L CA+L + +++H +++ D++I L+ + C + ++ VF +++E N+
Sbjct: 26 LPKCANLNQV---KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167
NS+I A + ++A +F M + + T+ +L AC+ + +
Sbjct: 83 HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLL--EDALELIRSSKFQPNAVIWGALLGG 219
+ ++ ++ ++D S+ G L DA++L + + V W ++LGG
Sbjct: 143 IE-KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGG 194
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 214/333 (64%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D+ISW T+I Y+ ++EAL F EM SG +P+ VTM ++L ACAHLGA+D+G
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 61 REIHLYVMQ--IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
R IH+Y+ + G + ++L+DMYAKCG ++ + VF + K+L WN++I G A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
+HG A + +F RM ++P+ +TF+ +LSAC+H+G+++ GR F +MT Y +TP++
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGCM+DLL +GL ++A E+I + +P+ VIW +LL CK+H N+E+ L+
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 566
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
+EP N G LL N+YA RW EV K R + + G+ K+ PG S IE++ V++F D
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM-KKVPGCSSIEIDSVVHEFIIGD 625
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
K HP + EIY L +++ L+ A +VP+ +L
Sbjct: 626 KFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVL 658
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 133/230 (57%), Gaps = 14/230 (6%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P +D++SW MI+ Y++ ++EAL+ F +M + + PD+ TM TV+SACA G+++LG
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++HL++ GF ++ I +AL+D+Y+KCG L+ + +F +L K++ WN++I G
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFLSMTCGYS 173
EAL +F M+ PN VT +S+L AC H G ++ GR +R +T S
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS 405
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ ++D+ +K G +E A ++ +S + W A++ G +H
Sbjct: 406 LRTS------LIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMH 448
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 41/297 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
+++ W TM ++ + AL + M + G+ P+ T VL +CA A G++IH
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIH 157
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK----------------------- 101
+V+++G D+D+Y+ ++L+ MY + G L+ + VF K
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIE 217
Query: 102 --------LREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ K++ WN++I G A G EAL +F M+ NV P+ T ++V+SAC
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
+G +E GR+ L + + ++ ++DL SK G LE A L ++ + + W
Sbjct: 278 QSGSIELGRQVHLWID-DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISW 335
Query: 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA-------EVSRWAEV 263
L+GG H NL + + + M+ T+L + A ++ RW V
Sbjct: 336 NTLIGGYT-HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 128/302 (42%), Gaps = 33/302 (10%)
Query: 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD---MYAKCGSLDRSLLVFFKL 102
++L C L +L R IH +++IG Y S L++ + L ++ VF +
Sbjct: 38 SLLHNCKTLQSL---RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI 94
Query: 103 REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
+E NL WN++ G A+ AL ++ MI + PN TF VL +C + +EG+
Sbjct: 95 QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 154
Query: 163 R---RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ L + C + ++ + + G LEDA ++ S + + V + AL+ G
Sbjct: 155 QIHGHVLKLGCDLDLYVHTS----LISMYVQNGRLEDAHKVFDKSPHR-DVVSYTALIKG 209
Query: 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE--- 276
+E A +E+ + + +++ YAE + E ++ M + +
Sbjct: 210 YASRGYIENAQKLFDEIPV---KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 277 -------KRCPGSSWIEMERKV------YQFAASDKSHPASDEIYSSLSKLDEQLKLASY 323
C S IE+ R+V + F ++ K A ++YS +L+ L
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 324 VP 325
+P
Sbjct: 327 LP 328
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 208/327 (63%), Gaps = 2/327 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
+P D+ISW T+I+ Y+QN EA++ +N M+ G I+ +Q T +VL AC+ GAL
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G ++H +++ G +DV++ ++L DMY KCG L+ +L +F+++ N WN++I
Sbjct: 470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGF 529
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HG +A+ +F M+ E V+P+ +TF+++LSAC+H+GLV+EG+ F M Y ITP ++
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVD+ +AG LE AL+ I+S QP+A IWGALL C++H N+++ IA L +
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP + GY LL NMYA +W V +IR G+ K PG S +E++ KV F ++
Sbjct: 650 EPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK-TPGWSSMEVDNKVEVFYTGNQ 708
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPE 326
+HP +E+Y L+ L +LK+ YVP+
Sbjct: 709 THPMYEEMYRELTALQAKLKMIGYVPD 735
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 139/257 (54%), Gaps = 12/257 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N+Q A+ F EM+ S I PD +T+ ++ S + LG +
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 367
Query: 61 REIHLYVMQIGFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
R + + ++ G+ + D+ IG+A+V MYAK G +D + VF L ++ WN+II G A
Sbjct: 368 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQ 427
Query: 120 HGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR---RFLSMTCGYSIT 175
+GFA EA+ M++ M E + N T++SVL AC+ AG + +G + R L +
Sbjct: 428 NGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN----GLY 483
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
+V + D+ K G LEDAL L + N+V W L+ H + E A + E
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 236 LMI--LEPNNSGYCTLL 250
++ ++P++ + TLL
Sbjct: 543 MLDEGVKPDHITFVTLL 559
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD+ SW MI+ Y Q+ +EAL N ++ + D VT+ ++LSAC G + G
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRG 266
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y ++ G + ++++ + L+D+YA+ G L VF ++ ++L WNSII+ ++
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVE 179
A+++F M ++P+ +T IS+ S + G + R + ++ G+ + ++
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL-EDIT 385
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNA--VIWGALLGG 219
+V + +K GL++ A + + PN + W ++ G
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVF---NWLPNTDVISWNTIISG 424
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 137/267 (51%), Gaps = 16/267 (5%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFN-EMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+ +W MI+ Y + E + F+ M +SG++PD T +VL AC + +D G +
Sbjct: 115 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV--ID-GNK 171
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH ++ GF DVY+ ++L+ +Y++ ++ + ++F ++ +++ WN++I G G
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A EAL + + + + VT +S+LSACT AG G S + + + E+
Sbjct: 232 AKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRG-VTIHSYSIKHGLESELFVSN 286
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI--LE 240
++DL ++ G L D ++ + + + W +++ +L+ A E+ + ++
Sbjct: 287 KLIDLYAEFGRLRDCQKVF-DRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ 345
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIR 267
P+ C L+++ + +S+ ++ R
Sbjct: 346 PD----CLTLISLASILSQLGDIRACR 368
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 215/332 (64%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDL 59
MP ++I+SW T+I+ Q F EA++ F M++ G++ D VTM ++ SAC HLGALDL
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ I+ Y+ + G +DV +G+ LVDM+++CG + ++ +F L +++ W + I +A+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAM 548
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G A A+ +FD MI + ++P+GV F+ L+AC+H GLV++G+ F SM + ++PE
Sbjct: 549 AGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDV 608
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HYGCMVDLL +AGLLE+A++LI +PN VIW +LL C++ N+E+A A ++ +L
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
P +G LL N+YA RW ++ K+R++MKE G+ K PG+S I++ K ++F + D+
Sbjct: 669 APERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP-PGTSSIQIRGKTHEFTSGDE 727
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
SHP I + L ++ ++ +VP+L +L
Sbjct: 728 SHPEMPNIEAMLDEVSQRASHLGHVPDLSNVL 759
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ ++I Y+ + EA+ F M NSGISPD+ T LSACA A G +IH ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
++G+ D+++ ++LV YA+CG LD + VF ++ E+N+ W S+I G A FA +A+
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 129 MFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRF 165
+F RM+ E V PN VT + V+SAC +E G + +
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M R+++SWT+MI Y++ ++A+D F M ++ ++P+ VTM V+SACA L L+
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +++ ++ G +++ + SALVDMY KC ++D + +F + NL N++
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154
G EAL +F+ M+ V P+ ++ +S +S+C+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 33/224 (14%)
Query: 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71
M + Y + REAL FN M +SG+ PD+++M + +S+C+ L + G+ H YV++ G
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNG 367
Query: 72 FDIDVYIGSALVDMYAKC-------------------------------GSLDRSLLVFF 100
F+ I +AL+DMY KC G +D + F
Sbjct: 368 FESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFE 427
Query: 101 KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVE 159
+ EKN+ WN+II GL EA+ +F M E V +GVT +S+ SAC H G ++
Sbjct: 428 TMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALD 487
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
+ + + I +V +VD+ S+ G E A+ + S
Sbjct: 488 LAKWIYYYIE-KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 530
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 53/256 (20%)
Query: 33 KNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92
K S ++ + T AT S+ + +D + H + + G D DV + LV + G+
Sbjct: 22 KPSLLNQSKCTKATP-SSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGT- 79
Query: 93 DRSLLVFFKLREKN------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
R L F K +N F +NS+I G A G +EA+ +F RM+ + P+ TF
Sbjct: 80 -RESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFP 138
Query: 147 SVLSACT-----------HAGLVEEGRRRFL----SMTCGYSITPEVEHYGCMVDLLSKA 191
LSAC H +V+ G + L S+ Y+ E++ + D +S+
Sbjct: 139 FGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSER 198
Query: 192 GLL---------------EDALEL----IRSSKFQPNAVIWGALLGGCKLHRNLEIAH-- 230
++ +DA++L +R + PN+V ++ C +LE
Sbjct: 199 NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKV 258
Query: 231 --------IAVNELMI 238
I VN+LM+
Sbjct: 259 YAFIRNSGIEVNDLMV 274
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 201/318 (63%), Gaps = 5/318 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-SGISPDQVTMATVLSACAHLGALDL 59
MP RD+ SW ++ +QN F EA+ F M N I P++VT+ VLSACA G L L
Sbjct: 219 MPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQL 278
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
+ IH + + DV++ ++LVD+Y KCG+L+ + VF +K+L WNS+I A+
Sbjct: 279 AKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFAL 338
Query: 120 HGFAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176
HG + EA+A+F+ M+ N+ +P+ +TFI +L+ACTH GLV +GR F MT + I P
Sbjct: 339 HGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEP 398
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236
+EHYGC++DLL +AG ++ALE++ + K + + IWG+LL CK+H +L++A +AV L
Sbjct: 399 RIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNL 458
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ L PNN GY ++ N+Y E+ W E + R +K K PG S IE++ +V+QF +
Sbjct: 459 VALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKP-PGWSRIEIDNEVHQFYS 517
Query: 297 SDKSHPASDEIYSSLSKL 314
DKSHP ++EIY L L
Sbjct: 518 LDKSHPETEEIYMILDSL 535
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 115/271 (42%), Gaps = 38/271 (14%)
Query: 9 WTTMITCYSQNKQFR--EALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHL 65
+ ++T YS + A F M N + P+ VL + +L + +H
Sbjct: 91 YAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHT 150
Query: 66 YVMQIGFDIDVYIGSALVDMYA--------------------------------KCGSLD 93
++ + GF + V + +AL+ YA + G +
Sbjct: 151 HLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIS 210
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSAC 152
++ +F + E+++ WN+I+ +G EA+++F RMI E ++ PN VT + VLSAC
Sbjct: 211 NAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSAC 270
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
G ++ + + ++ +V +VDL K G LE+A + + + + +
Sbjct: 271 AQTGTLQLA-KGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMAS-KKSLTA 328
Query: 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
W +++ LH E A E+M L N+
Sbjct: 329 WNSMINCFALHGRSEEAIAVFEEMMKLNIND 359
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 202/326 (61%), Gaps = 1/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW MI C+S +AL + M N G+ D T+ +LS+CAH+ AL++G
Sbjct: 168 MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG 227
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H I + V++ +AL+DMYAKCGSL+ ++ VF +R++++ WNS+I G VH
Sbjct: 228 VMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVH 287
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EA++ F +M+ V PN +TF+ +L C+H GLV+EG F M+ + +TP V+H
Sbjct: 288 GHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKH 347
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGCMVDL +AG LE++LE+I +S + V+W LLG CK+HRNLE+ +A+ +L+ LE
Sbjct: 348 YGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
N+G L+ ++Y+ + +R ++ ++ PG SWIE+ +V++F DK
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQT-VPGWSWIEIGDQVHKFVVDDKM 466
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPE 326
HP S IYS L ++ + LA Y PE
Sbjct: 467 HPESAVIYSELGEVINRAILAGYKPE 492
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 107/216 (49%), Gaps = 3/216 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLYV 67
W +I +S + ++ +N M S +S PD T L +C + ++ EIH V
Sbjct: 74 WNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSV 133
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ GF D + ++LV Y+ GS++ + VF ++ ++L WN +I + G ++AL
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187
+M+ RM E V + T +++LS+C H + G + C V ++D+
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG-VMLHRIACDIRCESCVFVSNALIDM 252
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+K G LE+A+ + + + + + W +++ G +H
Sbjct: 253 YAKCGSLENAIGVFNGMR-KRDVLTWNSMIIGYGVH 287
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 204/333 (61%), Gaps = 3/333 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQVTMATVLSACAHLGALDL 59
M RDI+SW MI Y+Q+ +AL F ++ G PD++T+ LSAC+ +GAL+
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GR IH++V ++V + + L+DMY+KCGSL+ ++LVF K++ WN++I G A+
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 120 HGFAHEALAMFDRMI-YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
HG++ +AL +F+ M ++P +TFI L AC HAGLV EG R F SM Y I P++
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKI 397
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
EHYGC+V LL +AG L+ A E I++ ++V+W ++LG CKLH + + L+
Sbjct: 398 EHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG 457
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD 298
L NSG LL N+YA V + V K+R MKE GI K PG S IE+E KV++F A D
Sbjct: 458 LNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKE-PGISTIEIENKVHEFRAGD 516
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+ H S EIY+ L K+ E++K YVP +L
Sbjct: 517 REHSKSKEIYTMLRKISERIKSHGYVPNTNTVL 549
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 129/251 (51%), Gaps = 38/251 (15%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ +T I S N +A + ++ +S I+P++ T +++L +C+ G+ IH
Sbjct: 94 DLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIH 149
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSL-----------DRSLL---------------- 97
+V++ G ID Y+ + LVD+YAK G + +RSL+
Sbjct: 150 THVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVE 209
Query: 98 ----VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSAC 152
+F + E+++ WN +I+G A HGF ++AL +F +++ E +P+ +T ++ LSAC
Sbjct: 210 AARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSAC 269
Query: 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI 212
+ G +E GR + + I V+ ++D+ SK G LE+A+ L+ + + + V
Sbjct: 270 SQIGALETGRWIHVFVKSS-RIRLNVKVCTGLIDMYSKCGSLEEAV-LVFNDTPRKDIVA 327
Query: 213 WGALLGGCKLH 223
W A++ G +H
Sbjct: 328 WNAMIAGYAMH 338
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145
YA G + SL +F + + +LF + + I +++G +A ++ +++ + PN TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 146 ISVLSAC-THAG-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192
S+L +C T +G L+ +F G I P V +VD+ +K G
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKF-----GLGIDPYVA--TGLVDVYAKGG 175
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 205/326 (62%), Gaps = 2/326 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDL 59
M +DIISW T+I YS+N EAL FN + + SPD+ T+A VL ACA L A D
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
GREIH Y+M+ G+ D ++ ++LVDMYAKCG+L + ++F + K+L W +I G +
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
HGF EA+A+F++M +E + ++F+S+L AC+H+GLV+EG R F M I P VE
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY C+VD+L++ G L A I + P+A IWGALL GC++H ++++A ++ L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299
EP N+GY L+ N+YAE +W +V ++R + + G+ K PG SWIE++ +V F A D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN-PGCSWIEIKGRVNIFVAGDS 756
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVP 325
S+P ++ I + L K+ ++ Y P
Sbjct: 757 SNPETENIEAFLRKVRARMIEEGYSP 782
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R ++S+T+MI Y++ EA+ F EM+ GISPD T+ VL+ CA LD G
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H ++ + D+++ +AL+DMYAKCGS+ + LVF ++R K++ WN+II G + +
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKN 476
Query: 121 GFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEV 178
+A+EAL++F+ ++ E P+ T VL AC ++GR M GY V
Sbjct: 477 CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHV 536
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ +VD+ +K G L A ++ + V W ++ G +H
Sbjct: 537 AN--SLVDMYAKCGALLLA-HMLFDDIASKDLVSWTVMIAGYGMH 578
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD+ISW ++I Y N + L F +M SGI D T+ +V + CA + LG
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R +H ++ F + + L+DMY+KCG LD + VF ++ ++++ + S+I G A
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 375
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR---FLSMTCGYSITPE 177
G A EA+ +F+ M E + P+ T +VL+ C L++EG+R G+ I
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ +K G +++A EL+ S + + W ++GG
Sbjct: 436 ----NALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIGG 472
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 101/194 (52%), Gaps = 1/194 (0%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ +++ F ++ F +M +SG+ D T + V + + L ++ G ++H +++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +G++LV Y K +D + VF ++ E+++ WNSII G +G A + L+
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188
+F +M+ +E + T +SV + C + L+ G R S+ + E ++D+
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSREDRFCNTLLDMY 341
Query: 189 SKAGLLEDALELIR 202
SK G L+ A + R
Sbjct: 342 SKCGDLDSAKAVFR 355
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99
D T+ +VL CA +L G+E+ ++ GF ID +GS L MY CG L + VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 100 FKLR-EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148
+++ EK LF WN ++ LA G ++ +F +M+ VE + TF V
Sbjct: 153 DEVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 199/328 (60%), Gaps = 3/328 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+ SW T+I + +N EALD F M+ G+ P T+ ++LS CA L +L G
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ FD+DVY+ S L+ MY KCG L +S L+F + K++ WNSII G A H
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410
Query: 121 GFAHEALAMFDRM-IYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G EAL +F M + + +PN VTF++ LSAC++AG+VEEG + + SM + + P
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239
HY CMVD+L +AG +A+E+I S +P+A +WG+LLG C+ H L++A +L+ +
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530
Query: 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD- 298
EP NSG LL NMYA RWA+V ++R MK + K PG SW E+E KV+ F
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRK-SPGCSWTEVENKVHAFTRGGI 589
Query: 299 KSHPASDEIYSSLSKLDEQLKLASYVPE 326
SHP + I L +LD L+ A Y P+
Sbjct: 590 NSHPEQESILKILDELDGLLREAGYNPD 617
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 12/224 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R +I+WTTM+T Y QN + +A F+ M +V+ ++L G ++
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIEDA 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ VM + V +A++ + G + ++ VF ++E+N W ++I+ +
Sbjct: 254 EEL-FEVMPVK---PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERN 309
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPEVE 179
GF EAL +F M + V P T IS+LS C + G++ + C + + +V
Sbjct: 310 GFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDV--DVY 367
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
++ + K G L + +LI + ++W +++ G H
Sbjct: 368 VASVLMTMYIKCGELVKS-KLIFDRFPSKDIIMWNSIISGYASH 410
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 45/253 (17%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+IISW +++ Y +N + EA F+ M + V+ ++ H G +D+
Sbjct: 74 MPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVHNGKVDVA 129
Query: 61 R----------EIHLYVMQIGF-----------------DIDVYIGSALVDMYAKCGSLD 93
++ VM IGF D D ++++ K G +D
Sbjct: 130 ESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVD 189
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ E+++ W +++ G + +A +FD M E V++ S+L
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYV 245
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
G +E+ F M + P V M+ L + G + A + S K + N W
Sbjct: 246 QNGRIEDAEELFEVM----PVKP-VIACNAMISGLGQKGEIAKARRVFDSMK-ERNDASW 299
Query: 214 GALLGGCKLH-RN 225
++ K+H RN
Sbjct: 300 QTVI---KIHERN 309
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 29/274 (10%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
++ I SW +M+ Y N R+A F+EM + I ++ ++S G +D R+
Sbjct: 45 SKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI----ISWNGLVSGYMKNGEIDEARK 100
Query: 63 IHLYVMQIGFDI----DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA 118
+ FD+ +V +ALV Y G +D + +F+K+ EKN W ++ G
Sbjct: 101 V--------FDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFL 152
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178
G +A +++ MI + + + S++ G V+E R F M+ IT
Sbjct: 153 QDGRIDDACKLYE-MIPDK---DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT--- 205
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238
+ MV + ++DA ++ + V W ++L G + +E A + E+M
Sbjct: 206 --WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVSWTSMLMGYVQNGRIEDAE-ELFEVMP 261
Query: 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272
++P + C +++ + A+ ++ +MKE
Sbjct: 262 VKPVIA--CNAMISGLGQKGEIAKARRVFDSMKE 293
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
++ G + + +F K++ WNS++ G + +A +FD M N+ +++
Sbjct: 28 SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI----ISWN 83
Query: 147 SVLSACTHAGLVEEGRRRF 165
++S G ++E R+ F
Sbjct: 84 GLVSGYMKNGEIDEARKVF 102
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 216/328 (65%), Gaps = 2/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGRE 62
+D +S+ ++++ Y+Q+ EA + F + KN ++ + +T++TVL A +H GAL +G+
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH V+++G + DV +G++++DMY KCG ++ + F +++ KN+ W ++I G +HG
Sbjct: 309 IHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGH 368
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
A +AL +F MI V PN +TF+SVL+AC+HAGL EG R F +M + + P +EHYG
Sbjct: 369 AAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYG 428
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL +AG L+ A +LI+ K +P+++IW +LL C++H+N+E+A I+V L L+ +
Sbjct: 429 CMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSS 488
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
N GY LL ++YA+ RW +V ++R+ MK G+ K PG S +E+ +V+ F D+ HP
Sbjct: 489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP-PGFSLLELNGEVHVFLIGDEEHP 547
Query: 303 ASDEIYSSLSKLDEQLKLASYVPELEAM 330
++IY L++L+ +L A YV ++
Sbjct: 548 QREKIYEFLAELNRKLLEAGYVSNTSSV 575
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 145/297 (48%), Gaps = 29/297 (9%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEM------KNSGISPDQVTMATVLSACAHL 54
+P R+I+SWT+MI Y N +A+ F ++ + + D + + +V+SAC+ +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--GSLDRSLLVFFKLREKNLFCWNS 112
A L IH +V++ GFD V +G+ L+D YAK G + + +F ++ +K+ +NS
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 113 IIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGR---RRFLSM 168
I+ A G ++EA +F R++ V N +T +VL A +H+G + G+ + + M
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH----R 224
+ +V ++D+ K G +E A + K N W A++ G +H +
Sbjct: 317 ----GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAK 371
Query: 225 NLEIAHIAVNELMILEPNNSGYCTLL-----LNMYAEVSRWAEVTKIRVAMKELGIE 276
LE+ ++ + PN + ++L ++ E RW K R + E G+E
Sbjct: 372 ALELFPAMIDSG--VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGV-EPGLE 425
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D+ SW ++I +++ EAL AF+ M+ + P + + + AC+ L + G++ H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
G+ D+++ SAL+ MY+ CG L+ + VF ++ ++N+ W S+I G ++G A
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 125 EALAMFDRMIYENVEPNGVTF------ISVLSACTHA---GLVE 159
+A+++F ++ + + + F +SV+SAC+ GL E
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +++ SWT MI Y + +AL+ F M +SG+ P+ +T +VL+AC+H G G
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407
Query: 61 -REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLA 118
R + + G + + +VD+ + G L ++ + +++ K + W+S++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACR 467
Query: 119 VH 120
+H
Sbjct: 468 IH 469
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 197/332 (59%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M RD +W MI Y + EALD F +M+ G+ P ++ ++LS CA L +L G
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R++H ++++ FD DVY+ S L+ MY KCG L ++ LVF + K++ WNSII G A H
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G EAL +F M PN VT I++L+AC++AG +EEG F SM + +TP VEH
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C VD+L +AG ++ A+ELI S +P+A +WGALLG CK H L++A +A +L E
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASD-K 299
P+N+G LL ++ A S+W +V +R M+ + K PG SWIE+ +KV+ F K
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSK-FPGCSWIEVGKKVHMFTRGGIK 589
Query: 300 SHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+HP I L K D L+ A Y P+ +L
Sbjct: 590 NHPEQAMILMMLEKTDGLLREAGYSPDCSHVL 621
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R++++WTTMIT Y QN + A F M +V+ ++L G ++
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDA 253
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E VM + V +A++ + + G + ++ VF + +++ W +I+
Sbjct: 254 EEF-FEVMPMK---PVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERK 309
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR--------RF------- 165
GF EAL +F +M + V P+ + IS+LS C ++ GR+ +F
Sbjct: 310 GFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVA 369
Query: 166 -----LSMTCGYSI----------TPEVEHYGCMVDLLSKAGLLEDALELIR---SSKFQ 207
+ + CG + + ++ + ++ + GL E+AL++ SS
Sbjct: 370 SVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTM 429
Query: 208 PNAVIWGALLGGC----KLHRNLEI 228
PN V A+L C KL LEI
Sbjct: 430 PNKVTLIAILTACSYAGKLEEGLEI 454
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R+++SWT M+ Y Q EA F M ++V+ + G +D
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLIDDGRIDKA 160
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+++ +M + DV + ++ + G +D + L+F ++RE+N+ W ++I G +
Sbjct: 161 RKLY-DMMPVK---DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQN 216
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168
A +F+ M E V++ S+L T +G +E+ F M
Sbjct: 217 NRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139
+ LV Y K + + VF + E+N+ W ++++G G EA ++F RM E
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM----PE 138
Query: 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199
N V++ + G +++ R+ + M +V M+ L + G +++A
Sbjct: 139 RNEVSWTVMFGGLIDDGRIDKARKLYDMMP-----VKDVVASTNMIGGLCREGRVDEA-R 192
Query: 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230
LI + N V W ++ G + + +++A
Sbjct: 193 LIFDEMRERNVVTWTTMITGYRQNNRVDVAR 223
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 127/299 (42%), Gaps = 31/299 (10%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+ I SW ++++ Y N +EA F+EM + V+ ++S + R
Sbjct: 46 KAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWNGLVSGYIKNRMIVEARN- 100
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
V ++ + +V +A+V Y + G + + +F+++ E+N W + GL G
Sbjct: 101 ---VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRI 157
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+A ++D M ++V V +++ G V+E R F M +T +
Sbjct: 158 DKARKLYDMMPVKDV----VASTNMIGGLCREGRVDEARLIFDEMRERNVVT-----WTT 208
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
M+ + ++ A +L + V W ++L G L +E A E+M ++P
Sbjct: 209 MITGYRQNNRVDVARKLFEVMP-EKTEVSWTSMLLGYTLSGRIEDAE-EFFEVMPMKPVI 266
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEM----ERKVYQFAASD 298
+ C ++ + EV E++K R + E R ++W M ERK ++ A D
Sbjct: 267 A--CNAMIVGFGEV---GEISKARRVFDLM--EDR-DNATWRGMIKAYERKGFELEALD 317
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146
++ G ++ + F L+ K + WNSI+ G +G EA +FD M NV V++
Sbjct: 28 SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWN 83
Query: 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204
++S ++ E R F + PE V + MV + G++ +A L
Sbjct: 84 GLVSGYIKNRMIVEARNVF-------ELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136
Query: 205 KFQPNAVIWGALLGG 219
+ N V W + GG
Sbjct: 137 P-ERNEVSWTVMFGG 150
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 270 bits (691), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 205/343 (59%), Gaps = 13/343 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKN-----------SGISPDQVTMATVLS 49
M RD+++W TMIT Y ++ +AL ++M+N + P+ +T+ T+L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFC 109
+CA L AL G+EIH Y ++ DV +GSALVDMYAKCG L S VF ++ +KN+
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585
Query: 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
WN II +HG EA+ + M+ + V+PN VTFISV +AC+H+G+V+EG R F M
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN-AVIWGALLGGCKLHRNLEI 228
Y + P +HY C+VDLL +AG +++A +L+ N A W +LLG ++H NLEI
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705
Query: 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288
IA L+ LEPN + + LL N+Y+ W + T++R MKE G+ K PG SWIE
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKE-PGCSWIEHG 764
Query: 289 RKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
+V++F A D SHP S+++ L L E+++ YVP+ +L
Sbjct: 765 DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVL 807
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 30/253 (11%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
RD+++W T+++ QN+Q EAL+ EM G+ PD+ T+++VL AC+HL L G+E
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 63 IHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H Y ++ G D + ++GSALVDMY C + VF + ++ + WN++I G + +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 122 FAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG-----------LVEEG--RRRFLS 167
EAL +F M + N T V+ AC +G +V+ G R RF+
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ 443
Query: 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227
T ++D+ S+ G ++ A+ + + + + V W ++ G + E
Sbjct: 444 NT--------------LMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGYVFSEHHE 488
Query: 228 IAHIAVNELMILE 240
A + ++++ LE
Sbjct: 489 DALLLLHKMQNLE 501
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 20/263 (7%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDLGRE 62
R I W MI YSQN+ +EAL F M+ S G+ + TMA V+ AC GA
Sbjct: 367 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA 426
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
IH +V++ G D D ++ + L+DMY++ G +D ++ +F K+ +++L WN++I G
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 123 AHEALAMFDRMIYENVE-------------PNGVTFISVLSACTHAGLVEEGRRRFLSMT 169
+AL + +M +N+E PN +T +++L +C + +G + +
Sbjct: 487 HEDALLLLHKM--QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG-KEIHAYA 543
Query: 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229
++ +V +VD+ +K G L+ + ++ Q N + W ++ +H N + A
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEA 602
Query: 230 HIAVNELMI--LEPNNSGYCTLL 250
+ +M+ ++PN + ++
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVF 625
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W ++ ++ REA+ + +M GI PD +L A A L ++LG++IH +V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 69 QIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
+ G+ +D V + + LV++Y KCG VF ++ E+N WNS+I L AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
F M+ ENVEP+ T +SV++AC++ L M G + +V YG
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN-----------LPMPEGLMMGKQVHAYG 228
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG---ALDLG 60
R+ +SW ++I+ +++ AL+AF M + + P T+ +V++AC++L L +G
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H Y ++ G +++ +I + LV MY K G L S ++ ++L WN+++ L +
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EAL M+ E VEP+ T SVL AC+H ++ G+
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 200/319 (62%), Gaps = 1/319 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D++ W MI Q K+ ++AL F EM+ S PD++TM LSAC+ LGALD+G
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
IH Y+ + ++V +G++LVDMYAKCG++ +L VF ++ +N + +II GLA+H
Sbjct: 409 IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALH 468
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A A++ F+ MI + P+ +TFI +LSAC H G+++ GR F M +++ P+++H
Sbjct: 469 GDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH 528
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y MVDLL +AGLLE+A L+ S + +A +WGALL GC++H N+E+ A +L+ L+
Sbjct: 529 YSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELD 588
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++SG LL MY E + W + + R M E G+EK PG S IE+ V +F DKS
Sbjct: 589 PSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEK-IPGCSSIEVNGIVCEFIVRDKS 647
Query: 301 HPASDEIYSSLSKLDEQLK 319
P S++IY L L ++
Sbjct: 648 RPESEKIYDRLHCLGRHMR 666
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 136/269 (50%), Gaps = 37/269 (13%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P RD++SW +I Y + + +A+ + M++ G+ PD VTM ++S+C+ LG L+ G+
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Query: 62 EIHLYVMQIGFDIDVYIGSALVDM-------------------------------YAKCG 90
E + YV + G + + + +AL+DM YA+CG
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337
Query: 91 SLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150
LD S +F + EK++ WN++I G +ALA+F M N +P+ +T I LS
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397
Query: 151 ACTHAGLVEEG--RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208
AC+ G ++ G R++ YS++ V +VD+ +K G + +AL + + +
Sbjct: 398 ACSQLGALDVGIWIHRYIE---KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR- 453
Query: 209 NAVIWGALLGGCKLHRNLEIAHIAVNELM 237
N++ + A++GG LH + A NE++
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMI 482
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 5/218 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGI---SPDQVTMATVLSACAHLGALDLGR 61
+I SW I +S+++ +E+ + +M G PD T + CA L LG
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
I +V+++ ++ ++ +A + M+A CG ++ + VF + ++L WN +I G G
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
A +A+ ++ M E V+P+ VT I ++S+C+ G + G + F + +
Sbjct: 237 EAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG-KEFYEYVKENGLRMTIPLV 295
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ SK G + +A + + + + V W ++ G
Sbjct: 296 NALMDMFSKCGDIHEARRIFDNLE-KRTIVSWTTMISG 332
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 15/170 (8%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFKLREKNLFCWNSIIEGLA 118
++I ++ G +D + S L+ A S LD S+ + + N+F WN I G +
Sbjct: 70 KQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFS 129
Query: 119 VHGFAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
E+ ++ +M+ P+ T+ + C L G M G+ +
Sbjct: 130 ESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH-----MILGHVLK 184
Query: 176 PEVE---H-YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCK 221
+E H + + + + G +E+A ++ S + + V W L+ G K
Sbjct: 185 LRLELVSHVHNASIHMFASCGDMENARKVFDESPVR-DLVSWNCLINGYK 233
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 206/331 (62%), Gaps = 2/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + ++I W MI+ Y++N REA+D F+EM N + PD +++ + +SACA +G+L+
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R ++ YV + + DV+I SAL+DM+AKCGS++ + LVF + ++++ W+++I G +H
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A EA++++ M V PN VTF+ +L AC H+G+V EG F + + I P+ +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG-WWFFNRMADHKINPQQQH 461
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C++DLL +AG L+ A E+I+ QP +WGALL CK HR++E+ A +L ++
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P+N+G+ L N+YA W V ++RV MKE G+ K G SW+E+ ++ F DKS
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV-GCSWVEVRGRLEAFRVGDKS 580
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP +EI + ++ +LK +V +A L
Sbjct: 581 HPRYEEIERQVEWIESRLKEGGFVANKDASL 611
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 141/253 (55%), Gaps = 4/253 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P R I+SWT +++ Y+QN + EAL+ F++M+ + PD V + +VL+A L L G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH V+++G +I+ + +L MYAKCG + + ++F K++ NL WN++I G A +
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G+A EA+ MF MI ++V P+ ++ S +SAC G +E+ R + +V
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY-EYVGRSDYRDDVFI 360
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLE-IAHIAVNELMI 238
++D+ +K G +E A L+ + V+W A++ G LH R E I+ E
Sbjct: 361 SSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 239 LEPNNSGYCTLLL 251
+ PN+ + LL+
Sbjct: 420 VHPNDVTFLGLLM 432
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P I W +I YS+N F++AL ++ M+ + +SPD T +L AC+ L L +G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF--FKLREKNLFCWNSIIEGLA 118
R +H V ++GFD DV++ + L+ +YAKC L + VF L E+ + W +I+ A
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT-CGYSITPE 177
+G EAL +F +M +V+P+ V +SVL+A T +++GR S+ G I P+
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258
Query: 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
+ + + +K G + A L K PN ++W A++ G
Sbjct: 259 L--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93
NSGI D A+++ + H L ++IH ++ +G ++ + L+ + G +
Sbjct: 15 NSGIHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDIT 70
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ VF L +F WN+II G + + +AL M+ M V P+ TF +L AC+
Sbjct: 71 FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130
Query: 154 HAGLVEEGR 162
++ GR
Sbjct: 131 GLSHLQMGR 139
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 268 bits (686), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 202/318 (63%), Gaps = 1/318 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + +I+W +I+ YSQN + L+ + +MK+SG+ PD T+ +VLS+CAHLGA +G
Sbjct: 217 MPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 276
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+ V GF +V++ +A + MYA+CG+L ++ VF + K+L W ++I +H
Sbjct: 277 HEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMH 336
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G L +FD MI + P+G F+ VLSAC+H+GL ++G F +M Y + P EH
Sbjct: 337 GMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEH 396
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VDLL +AG L++A+E I S +P+ +WGALLG CK+H+N+++A +A +++ E
Sbjct: 397 YSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFE 456
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PNN GY L+ N+Y++ + +IRV M+E K+ PG S++E + +V+ F A D+S
Sbjct: 457 PNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKK-PGYSYVEHKGRVHLFLAGDRS 515
Query: 301 HPASDEIYSSLSKLDEQL 318
H ++E++ L +L+ +
Sbjct: 516 HEQTEEVHRMLDELETSV 533
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 2/231 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+ + +I+ Y+ N + +A F MK +G+S D VTM ++ C L LGR +H
Sbjct: 122 VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
++ G D +V + ++ + MY KCGS++ +F ++ K L WN++I G + +G A++
Sbjct: 182 CVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 241
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
L ++++M V P+ T +SVLS+C H G + G + P V +
Sbjct: 242 LELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG-HEVGKLVESNGFVPNVFVSNASIS 300
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237
+ ++ G L A + + + V W A++G +H EI + ++++
Sbjct: 301 MYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMI 350
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 45/262 (17%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
W + + F E++ + M SG SPD + +L +CA L G+++H +V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF--CWNSIIEGLAVHGFAHEA 126
+ G + + ++ +AL+ MY KCG + + VF + + + C+N++I G + +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACT--------------------------------- 153
MF RM V + VT + ++ CT
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 154 --HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL---IRSSKFQP 208
G VE GRR F M IT + ++ S+ GL D LEL ++SS P
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLIT-----WNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255
Query: 209 NAVIWGALLGGCKLHRNLEIAH 230
+ ++L C +I H
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGH 277
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 268 bits (685), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 195/330 (59%), Gaps = 1/330 (0%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P + + SW MI+ Y+QN +A+ F EM+ S SP+ VT+ +LSACA LGAL LG+
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440
Query: 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
+H V F+ +Y+ +AL+ MYAKCGS+ + +F + +KN WN++I G +HG
Sbjct: 441 WVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHG 500
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
EAL +F M+ + P VTF+ VL AC+HAGLV+EG F SM Y P V+HY
Sbjct: 501 QGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560
Query: 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241
CMVD+L +AG L+ AL+ I + +P + +W LLG C++H++ +A +L L+P
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620
Query: 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSH 301
+N GY LL N+++ + + +R K+ + K PG + IE+ + F + D+SH
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK-APGYTLIEIGETPHVFTSGDQSH 679
Query: 302 PASDEIYSSLSKLDEQLKLASYVPELEAML 331
P EIY L KL+ +++ A Y PE E L
Sbjct: 680 PQVKEIYEKLEKLEGKMREAGYQPETELAL 709
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 32/298 (10%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDL 59
MP +D I W TMI+ Y +N+ + E++ F ++ N + D T+ +L A A L L L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G +IH + G Y+ + + +Y+KCG + +F + R+ ++ +N++I G
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE--EG---RRRFLS------- 167
+G +L++F ++ T +S++ H L+ G + FLS
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 168 MTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALELIR---SSKFQPN 209
+T YS E+E + M+ ++ GL EDA+ L R S+F PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLNMYAEVSRWAEVTKI 266
V +L C L + + + + +S Y T L+ MYA+ AE ++
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 5/219 (2%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI+++ MI Y+ N + +L F E+ SG T+ +++ HL L IH
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM---LIYAIH 342
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y ++ F + +AL +Y+K ++ + +F + EK+L WN++I G +G
Sbjct: 343 GYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTE 402
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A+++F M PN VT +LSAC G + G + + + +
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTAL 461
Query: 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+ + +K G + +A L + N V W ++ G LH
Sbjct: 462 IGMYAKCGSIAEARRLF-DLMTKKNEVTWNTMISGYGLH 499
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++ ++W TMI+ Y + Q +EAL+ F EM NSGI+P VT VL AC+H G + G
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540
Query: 61 REI-HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLA 118
EI + + + GF+ V + +VD+ + G L R+L + E W +++
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACR 600
Query: 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC--------THAGLVEEGRRRFLSMTC 170
+H + A + +++ ++P+ V + +LS A + + ++R L+
Sbjct: 601 IHKDTNLARTVSEKLF--ELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 171 GYSI-----TPEV 178
GY++ TP V
Sbjct: 659 GYTLIEIGETPHV 671
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 22/245 (8%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
D+ + ++ +S N+ +L F + K++ + P+ T A +SA + GR I
Sbjct: 82 DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVI 141
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H + G D ++ +GS +V MY K ++ + VF ++ EK+ WN++I G +
Sbjct: 142 HGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201
Query: 124 HEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E++ +F +I E+ + T + +L A A L E + G I G
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAV--AELQE--------LRLGMQIHSLATKTG 251
Query: 183 C---------MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
C + L SK G ++ L R + +P+ V + A++ G + E++
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGETELSLSLF 310
Query: 234 NELMI 238
ELM+
Sbjct: 311 KELML 315
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 268 bits (685), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 216/338 (63%), Gaps = 8/338 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMK-----NSGISPDQVTMATVLSACAHLG 55
MP R++ISW+ +I Y +++EALD F EM+ + + P++ TM+TVLSAC LG
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL-REKNLFCWNSII 114
AL+ G+ +H Y+ + +ID+ +G+AL+DMYAKCGSL+R+ VF L +K++ ++++I
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 115 EGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173
LA++G E +F M +N+ PN VTF+ +L AC H GL+ EG+ F M +
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233
ITP ++HYGCMVDL ++GL+++A I S +P+ +IWG+LL G ++ +++ A+
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293
L+ L+P NSG LL N+YA+ RW EV IR M+ GI K PG S++E+E V++
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINK-VPGCSYVEVEGVVHE 452
Query: 294 FAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
F D+S S+ IY+ L ++ ++L+ A YV + + +L
Sbjct: 453 FVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVL 490
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 110/292 (37%), Gaps = 75/292 (25%)
Query: 9 WTTMITCYSQN---KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHL 65
W +I N Q + + M+N +SPD T +L + + L LG+ H
Sbjct: 27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86
Query: 66 YVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125
++ G D D ++ ++L++MY+ CG L + VF K+L WNS++ A G +
Sbjct: 87 QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146
Query: 126 ALAMFDRMIYEN------------------------------------VEPNGVTFISVL 149
A +FD M N V PN T +VL
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206
Query: 150 SACTHAGLVEEGR------------------RRFLSM--TCG-----------YSITPEV 178
SAC G +E+G+ + M CG +V
Sbjct: 207 SACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDV 266
Query: 179 EHYGCMVDLLSKAGLLEDAL----ELIRSSKFQPNAVIWGALLGGCKLHRNL 226
+ Y M+ L+ GL ++ E+ S PN+V + +LG C +HR L
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGAC-VHRGL 317
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 268 bits (684), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 197/314 (62%), Gaps = 2/314 (0%)
Query: 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66
+SW ++I+ Y +Q +A F M GI+PD+ T ATVL CA+L + LG++IH
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 67 VMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126
V++ DVYI S LVDMY+KCG L S L+F K ++ WN++I G A HG EA
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 688
Query: 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186
+ +F+RMI EN++PN VTFIS+L AC H GL+++G F M Y + P++ HY MVD
Sbjct: 689 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 748
Query: 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR-NLEIAHIAVNELMILEPNNSG 245
+L K+G ++ ALELIR F+ + VIW LLG C +HR N+E+A A L+ L+P +S
Sbjct: 749 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 808
Query: 246 YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305
TLL N+YA+ W +V+ +R M+ ++K PG SW+E++ +++ F DK+HP +
Sbjct: 809 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKE-PGCSWVELKDELHVFLVGDKAHPRWE 867
Query: 306 EIYSSLSKLDEQLK 319
EIY L + ++K
Sbjct: 868 EIYEELGLIYSEMK 881
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 43/274 (15%)
Query: 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67
S+ MIT YSQ + +AL F+ + +SG+ D+++++ V ACA + L G +I+
Sbjct: 349 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 408
Query: 68 MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127
++ +DV + +A +DMY KC +L + VF ++R ++ WN+II +G +E L
Sbjct: 409 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 468
Query: 128 AMFDRMIYENVEPNGVTFISVLSACT----------HAGLVEEGRRRFLSMTCGYSITPE 177
+F M+ +EP+ TF S+L ACT H+ +V+ G S+ C
Sbjct: 469 FLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCS------ 522
Query: 178 VEHYGCMVDLLSKAGLLEDA-------------------LELIRSSKFQPNAVIWGALLG 218
++D+ SK G++E+A LE + + + Q V W +++
Sbjct: 523 ------LIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIIS 576
Query: 219 GCKLHRNLEIAHIAVNELMIL--EPNNSGYCTLL 250
G + E A + +M + P+ Y T+L
Sbjct: 577 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVL 610
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW +M++ Y QN + ++++ F +M GI D T A +L C+ L LG
Sbjct: 140 MPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLG 199
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G D DV SAL+DMYAK SL VF + EKN W++II G +
Sbjct: 200 MQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 259
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
AL F M N + + SVL +C
Sbjct: 260 NLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 291
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 21/251 (8%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P ++ +SW+ +I QN AL F EM+ Q A+VL +CA L L LG
Sbjct: 241 IPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLG 300
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++H + ++ F D + +A +DMYAKC ++ + ++F N +N++I G +
Sbjct: 301 GQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQE 360
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
+AL +F R++ + + ++ V AC + EG + + + S++ +V
Sbjct: 361 EHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCV 419
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
+D+ K L +A + + + +AV W A++ AH E
Sbjct: 420 ANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIA----------AH---------E 459
Query: 241 PNNSGYCTLLL 251
N GY TL L
Sbjct: 460 QNGKGYETLFL 470
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD ++W MI Y+ + + EA+ F M I P+ VT ++L ACAH+G +D G E
Sbjct: 667 RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE- 725
Query: 64 HLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRSLLVFFKLR-EKNLFCWNSIIEGLAVH 120
+ Y+M+ + +D + S +VD+ K G + R+L + ++ E + W +++ +H
Sbjct: 726 YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIH 785
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 56/269 (20%)
Query: 3 ARDIISWTTMITCYSQNKQFRE--ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
R ++S+ C ++ +R + F + N S + V CA GAL+LG
Sbjct: 11 TRSVVSFNR---CLTEKISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELG 67
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK--LRE-------------- 104
++ H +++ GF ++ + L+ +Y + +VF K LR+
Sbjct: 68 KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 127
Query: 105 ---------------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149
+++ WNS++ G +G + +++ +F M E +E +G TF +L
Sbjct: 128 NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 187
Query: 150 SACTHAGLVEEGRRRFLSMTC-GYSITPEVEHYGCMVDLLSKAGLLE------DALELIR 202
C+ FL T G I V GC D+++ + LL+ +E +R
Sbjct: 188 KVCS-----------FLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR 236
Query: 203 SSKFQP--NAVIWGALLGGCKLHRNLEIA 229
+ P N+V W A++ GC + L +A
Sbjct: 237 VFQGIPEKNSVSWSAIIAGCVQNNLLSLA 265
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 206/331 (62%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +R ++SW MI ++QN + +AL+ F++M++ + PD T +V++A A L
Sbjct: 398 LQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IH VM+ D +V++ +ALVDMYAKCG++ + L+F + E+++ WN++I+G H
Sbjct: 458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GF AL +F+ M ++PNGVTF+SV+SAC+H+GLVE G + F M YSI ++H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YG MVDLL +AG L +A + I +P ++GA+LG C++H+N+ A A L L
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P++ GY LL N+Y S W +V ++RV+M G+ K PG S +E++ +V+ F + +
Sbjct: 638 PDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK-TPGCSMVEIKNEVHSFFSGSTA 696
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP S +IY+ L KL +K A YVP+ +L
Sbjct: 697 HPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD++SW T++ YSQN R AL+ M + P +T+ +VL A + L + +G
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+EIH Y M+ GFD V I +ALVDMYAKCGSL+ + +F + E+N+ WNS+I+ +
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162
EA+ +F +M+ E V+P V+ + L AC G +E GR
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M R+++SW +MI Y QN+ +EA+ F +M + G+ P V++ L ACA LG L+ G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R IH +++G D +V + ++L+ MY KC +D + +F KL+ + L WN++I G A +
Sbjct: 357 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 416
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR--RRFLSMTCGYSITPEV 178
G +AL F +M V+P+ T++SV++A + + + +C + V
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC---LDKNV 473
Query: 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
+VD+ +K G + A LI + + W A++ G H
Sbjct: 474 FVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 4/210 (1%)
Query: 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM 68
+ TM+ +++ +AL F M+ + P +L C L +G+EIH ++
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162
Query: 69 QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128
+ GF +D++ + L +MYAKC ++ + VF ++ E++L WN+I+ G + +G A AL
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222
Query: 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDL 187
M M EN++P+ +T +SVL A + L+ G+ +M G+ + +VD+
Sbjct: 223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS--TALVDM 280
Query: 188 LSKAGLLEDALELIRSSKFQPNAVIWGALL 217
+K G LE A +L + N V W +++
Sbjct: 281 YAKCGSLETARQLF-DGMLERNVVSWNSMI 309
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104
A +L C+ L L R+I V + G + + + LV ++ + GS+D + VF +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97
Query: 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152
K ++++++G A +AL F RM Y++VEP F +L C
Sbjct: 98 KLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 205/328 (62%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+++++W MI+ Y +N + + L F M GI P+ +++ L C+ L AL LGR+I
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H V + DV ++L+ MY KCG L + +F +++K++ WN++I G A HG A
Sbjct: 307 HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 366
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
+AL +F MI + P+ +TF++VL AC HAGLV G F SM Y + P+ +HY C
Sbjct: 367 DKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTC 426
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
MVDLL +AG LE+AL+LIRS F+P+A ++G LLG C++H+N+E+A A +L+ L N
Sbjct: 427 MVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQN 486
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+ L N+YA +RW +V ++R MKE + K PG SWIE+ KV+ F +SD+ HP
Sbjct: 487 AAGYVQLANIYASKNRWEDVARVRKRMKESNVVK-VPGYSWIEIRNKVHHFRSSDRIHPE 545
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
D I+ L +L++++KLA Y PELE L
Sbjct: 546 LDSIHKKLKELEKKMKLAGYKPELEFAL 573
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M +D+++W MI+ Y+Q+ +AL F EM ++ I PD +T VL AC H G +++G
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404
Query: 61 R---EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96
E + ++ D Y + +VD+ + G L+ +L
Sbjct: 405 MAYFESMVRDYKVEPQPDHY--TCMVDLLGRAGKLEEAL 441
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 127/311 (40%), Gaps = 39/311 (12%)
Query: 1 MPARDIISWTTMITCYSQN-KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDL 59
M A++ I+W +++ S++ + EA F+E+ PD + +LS
Sbjct: 87 MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP----EPDTFSYNIMLSCYV------- 135
Query: 60 GREIHLYVMQIGFD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115
R ++ Q FD D + ++ YA+ G ++++ +F+ + EKN WN++I
Sbjct: 136 -RNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMIS 194
Query: 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
G G +A F V V + ++++ A VE F MT ++
Sbjct: 195 GYIECGDLEKASHFFKVAPVRGV----VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLV 250
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRS---SKFQPNAVIWGALLGGCKLHRNLEIA--- 229
+ M+ + ED L+L R+ +PN+ + L GC L++
Sbjct: 251 T----WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306
Query: 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289
H V++ + N+ T L++MY + + K+ MK+ + +W M
Sbjct: 307 HQIVSKSTLC--NDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV------VAWNAMIS 358
Query: 290 KVYQFAASDKS 300
Q +DK+
Sbjct: 359 GYAQHGNADKA 369
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 205/307 (66%), Gaps = 1/307 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M + I+SWT MI+ Y+ + EA+D F EM+ +GI PD++++ +VL +CA LG+L+LG
Sbjct: 201 MLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG 260
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ IHLY + GF + +AL++MY+KCG + +++ +F ++ K++ W+++I G A H
Sbjct: 261 KWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYH 320
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH A+ F+ M V+PNG+TF+ +LSAC+H G+ +EG R F M Y I P++EH
Sbjct: 321 GNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEH 380
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC++D+L++AG LE A+E+ ++ +P++ IWG+LL C+ NL++A +A++ L+ LE
Sbjct: 381 YGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELE 440
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P + G LL N+YA++ +W +V+++R ++ + K+ PG S IE+ V +F + D S
Sbjct: 441 PEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENM-KKTPGGSLIEVNNIVQEFVSGDNS 499
Query: 301 HPASDEI 307
P EI
Sbjct: 500 KPFWTEI 506
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 152/364 (41%), Gaps = 73/364 (20%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEM-KNSGISPDQVTMATVLSACAHLGALDLGREI 63
++ + ++I Y+ N + + + + ++ + S PD+ T + +CA LG+ LG+++
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLA----- 118
H ++ + G V +AL+DMY K L + VF ++ E+++ WNS++ G A
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQM 191
Query: 119 --VHGFAH------------------------EALAMFDRMIYENVEPNGVTFISVLSAC 152
G H EA+ F M +EP+ ++ ISVL +C
Sbjct: 192 KKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 153 THAGLVEEG--------RRRFLSMT--CGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202
G +E G RR FL T C ++++ SK G++ A++L
Sbjct: 252 AQLGSLELGKWIHLYAERRGFLKQTGVC-----------NALIEMYSKCGVISQAIQLFG 300
Query: 203 SSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTL-LLNMYAEVSRWA 261
+ + + + W ++ G H N A NE+ + +G L LL+ + V W
Sbjct: 301 QMEGK-DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQ 359
Query: 262 EVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321
E G + +M R+ YQ + + ++ + KL+ +++
Sbjct: 360 E------------------GLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEIT 401
Query: 322 SYVP 325
+P
Sbjct: 402 KTMP 405
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
++I+ ++ G ++ + +VD K +D + +F ++ N+F +NSII +
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 121 GFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
+ + ++ +++ ++ E P+ TF + +C G G++ + C + V
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL-CKFGPRFHVV 145
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++D+ K L DA ++ ++ + + W +LL G
Sbjct: 146 TENALIDMYMKFDDLVDAHKVF-DEMYERDVISWNSLLSG 184
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 265 bits (676), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 201/324 (62%), Gaps = 1/324 (0%)
Query: 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGRE 62
A +++SWT + + S+N FR AL F +M+ G+ P+ TM+T+L L L G+E
Sbjct: 358 APNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKE 417
Query: 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122
+H + ++ D Y+ +ALVDMY K G L ++ +F+ ++ K+L WN ++ G A+ G
Sbjct: 418 VHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGR 477
Query: 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182
E +A F M+ +EP+ +TF SVLS C ++GLV+EG + F M Y I P +EH
Sbjct: 478 GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCS 537
Query: 183 CMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242
CMVDLL ++G L++A + I++ +P+A IWGA L CK+HR+LE+A IA L +LEP+
Sbjct: 538 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPH 597
Query: 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHP 302
NS +++N+Y+ ++RW +V +IR M+ + + SWI++++ V+ F A K+HP
Sbjct: 598 NSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQ-DLWSWIQIDQTVHIFYAEGKTHP 656
Query: 303 ASDEIYSSLSKLDEQLKLASYVPE 326
+IY L KL ++K + YVP+
Sbjct: 657 DEGDIYFELYKLVSEMKKSGYVPD 680
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
DI++W ++++ Y+ ++A+ M+ +G+ P +++++L A A G L LG+ IH
Sbjct: 189 DIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIH 248
Query: 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAH 124
Y+++ DVY+ + L+DMY K G L + +VF + KN+ WNS++ GL+
Sbjct: 249 GYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLK 308
Query: 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184
+A A+ RM E ++P+ +T+ S+ S G E+ M + P V + +
Sbjct: 309 DAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMK-EKGVAPNVVSWTAI 367
Query: 185 VDLLSKAGLLEDALEL---IRSSKFQPNAVIWGALLG--GC--KLHRNLEIAHIAVNELM 237
SK G +AL++ ++ PNA LL GC LH E+ + + +
Sbjct: 368 FSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNL 427
Query: 238 ILEPNNSGYCTLLLNMYAE 256
I + + T L++MY +
Sbjct: 428 ICD---AYVATALVDMYGK 443
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 92/160 (57%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP RD ++W ++ ++ + +A++ F EM+ SG TM +L C++ G
Sbjct: 49 MPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEG 108
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
R+IH YV+++G + +V + ++L+ MY++ G L+ S VF ++++NL WNSI+
Sbjct: 109 RQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKL 168
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160
G+ +A+ + D M ++P+ VT+ S+LS GL ++
Sbjct: 169 GYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD 208
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 59 LGREIHLYVMQIGFD-IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117
LG IH +++ G D D + SA + Y +C SL + +F ++ +++ WN I+
Sbjct: 5 LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64
Query: 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR-------RRFL---- 166
G +A+ +F M + + T + +L C++ EGR R L
Sbjct: 65 LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNV 124
Query: 167 ----SMTCGYSITPEVE---------------HYGCMVDLLSKAGLLEDALELIRSSK-- 205
S+ YS ++E + ++ +K G ++DA+ L+ +
Sbjct: 125 SMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEIC 184
Query: 206 -FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNNSGYCTLL 250
+P+ V W +LL G + L IAV + M L+P+ S +LL
Sbjct: 185 GLKPDIVTWNSLLSGYA-SKGLSKDAIAVLKRMQIAGLKPSTSSISSLL 232
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 264 bits (675), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 205/324 (63%), Gaps = 2/324 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R++ +W+ MI Y++N F +A+D F MK G+ ++ M +V+S+CAHLGAL+ G
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ YV++ +++ +G+ALVDM+ +CG +++++ VF L E + W+SII+GLAVH
Sbjct: 269 ERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVH 328
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G AH+A+ F +MI P VTF +VLSAC+H GLVE+G + +M + I P +EH
Sbjct: 329 GHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEH 388
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
YGC+VD+L +AG L +A I +PNA I GALLG CK+++N E+A N L+ ++
Sbjct: 389 YGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVK 448
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA-ASDK 299
P +SGY LL N+YA +W ++ +R MKE + K+ PG S IE++ K+ +F D+
Sbjct: 449 PEHSGYYVLLSNIYACAGQWDKIESLRDMMKE-KLVKKPPGWSLIEIDGKINKFTMGDDQ 507
Query: 300 SHPASDEIYSSLSKLDEQLKLASY 323
HP +I ++ +++L Y
Sbjct: 508 KHPEMGKIRRKWEEILGKIRLIGY 531
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 118/250 (47%), Gaps = 33/250 (13%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
++ + +I C+S + +A + +M S I PD +T ++ A + + + +G + H
Sbjct: 81 NLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTH 140
Query: 65 LYVMQIGFDIDVYIGSALVDMYA-------------------------------KCGSLD 93
+++ GF DVY+ ++LV MYA KCG ++
Sbjct: 141 SQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVE 200
Query: 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
+ +F ++ +NLF W+ +I G A + +A+ +F+ M E V N +SV+S+C
Sbjct: 201 NAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCA 260
Query: 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIW 213
H G +E G R + + + +T + +VD+ + G +E A+ + + +++ W
Sbjct: 261 HLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSW 318
Query: 214 GALLGGCKLH 223
+++ G +H
Sbjct: 319 SSIIKGLAVH 328
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDR--SLL-----VF 99
+L +C+ L + IH ++++ DV++ S L+ + + ++ +LL +F
Sbjct: 18 LLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIF 74
Query: 100 FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159
+++ NLF +N +I + +A + +M+ + P+ +TF ++ A + V
Sbjct: 75 SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134
Query: 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
G + S + +V +V + + G + A + F+ + V W +++ G
Sbjct: 135 VGEQTH-SQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAG 192
Query: 220 -CKL--------------HRNLEIAHIAVN 234
CK HRNL I +N
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMIN 222
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 206/332 (62%), Gaps = 2/332 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ +D++SWT+MI+ + N EA++ F M +G+S D V + +LSA A L AL+ G
Sbjct: 547 IKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKG 606
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
REIH Y+++ GF ++ I A+VDMYA CG L + VF ++ K L + S+I +H
Sbjct: 607 REIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMH 666
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
G A+ +FD+M +ENV P+ ++F+++L AC+HAGL++EGR M Y + P EH
Sbjct: 667 GCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEH 726
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y C+VD+L +A + +A E ++ K +P A +W ALL C+ H EI IA L+ LE
Sbjct: 727 YVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELE 786
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
P N G L+ N++AE RW +V K+R MK G+EK PG SWIEM+ KV++F A DKS
Sbjct: 787 PKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKH-PGCSWIEMDGKVHKFTARDKS 845
Query: 301 HPASDEIYSSLSKLDEQL-KLASYVPELEAML 331
HP S EIY LS++ +L + YV + + +L
Sbjct: 846 HPESKEIYEKLSEVTRKLEREVGYVADTKFVL 877
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 90/153 (58%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M D+++W ++I Y QN ++EAL+ F++M +G D+V+M ++++A L L G
Sbjct: 346 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG 405
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
E+H YV++ G+D ++ +G+ L+DMY+KC F ++ +K+L W ++I G A +
Sbjct: 406 MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQN 465
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153
EAL +F + + +E + + S+L A +
Sbjct: 466 DCHVEALELFRDVAKKRMEIDEMILGSILRASS 498
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 2/220 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP R +W TMI Y N + AL + M+ G+ + +L ACA L + G
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 201
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV 119
E+H ++++G+ +I +ALV MYAK L + +F +EK + WNSI+ +
Sbjct: 202 SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYST 261
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G + E L +F M PN T +S L+AC + G+ S+ + + E+
Sbjct: 262 SGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELY 321
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGG 219
++ + ++ G + A ++R + V W +L+ G
Sbjct: 322 VCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLIKG 360
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIH 64
D + W ++++ YS + + E L+ F EM +G +P+ T+ + L+AC LG+EIH
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 65 LYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
V++ ++Y+ +AL+ MY +CG + ++ + ++ ++ WNS+I+G +
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMY 367
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSA 151
EAL F MI + + V+ S+++A
Sbjct: 368 KEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 6/194 (3%)
Query: 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI--GFDIDVYIGSALVD 84
+AF + S + A VL C A+ GR++H + + F++D ++ LV
Sbjct: 66 EAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVF 124
Query: 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144
MY KCGSLD + VF ++ ++ F WN++I +G ALA++ M E V +
Sbjct: 125 MYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSS 184
Query: 145 FISVLSACTHAGLVEEGRR-RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203
F ++L AC + G L + GY T + +V + +K L A L
Sbjct: 185 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFI--VNALVSMYAKNDDLSAARRLFDG 242
Query: 204 SKFQPNAVIWGALL 217
+ + +AV+W ++L
Sbjct: 243 FQEKGDAVLWNSIL 256
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 201/335 (60%), Gaps = 5/335 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
MP + I++W ++++ + QN EA+ F +M+ SG PD T ++LSACA GA+ LG
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+H Y++ G D++V +G+AL+++Y++CG + ++ VF K++E N+ W ++I H
Sbjct: 228 SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTH 287
Query: 121 GFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
G+ +A+ +F++M + PN VTF++VLSAC HAGLVEEGR + MT Y + P VE
Sbjct: 288 GYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVE 347
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAV---IWGALLGGCKLHRNLEIAHIAVNEL 236
H+ CMVD+L +AG L++A + I A +W A+LG CK+HRN ++ L
Sbjct: 348 HHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRL 407
Query: 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAA 296
+ LEP+N G+ +L N+YA + EV+ IR M + K+ G S IE+E K Y F+
Sbjct: 408 IALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQV-GYSVIEVENKTYMFSM 466
Query: 297 SDKSHPASDEIYSSLSKLDEQLKLASYVPELEAML 331
D+SH + EIY L L + K Y P E ++
Sbjct: 467 GDESHQETGEIYRYLETLISRCKEIGYAPVSEEVM 501
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+P D + ++I S+ + + + M +S +SP T +V+ +CA L AL +G
Sbjct: 67 VPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIG 126
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+ +H + + GF +D Y+ +ALV Y+KCG ++ + VF ++ EK++ WNS++ G +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQN 186
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP---- 176
G A EA+ +F +M EP+ TF+S+LSAC G V G S Y I+
Sbjct: 187 GLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG-----SWVHQYIISEGLDL 241
Query: 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223
V+ +++L S+ G + A E+ K + N W A++ H
Sbjct: 242 NVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTH 287
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 112/262 (42%), Gaps = 42/262 (16%)
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+++H +++ G+ + + L+ + ++ + L+F + + F +NS+I+ +
Sbjct: 26 QQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACT-------------HAGLVEEGRRRFLS 167
+A + RM+ NV P+ TF SV+ +C HA + G ++
Sbjct: 86 RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQ 145
Query: 168 MT-------CG--------YSITPE--VEHYGCMVDLLSKAGLLEDALEL---IRSSKFQ 207
CG + PE + + +V + GL ++A+++ +R S F+
Sbjct: 146 AALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFE 205
Query: 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLLLNMYAEVSRWAEVTK 265
P++ + +LL C + + V++ +I E N T L+N+Y SR +V K
Sbjct: 206 PDSATFVSLLSACAQTGAVSLGSW-VHQYIISEGLDLNVKLGTALINLY---SRCGDVGK 261
Query: 266 IRVAMKELGIEKRCPGSSWIEM 287
R ++ K ++W M
Sbjct: 262 AREVFDKM---KETNVAAWTAM 280
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 200/331 (60%), Gaps = 1/331 (0%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
+ ++++S+ T + +N F +A +E+ + T A++LS A++G++ G
Sbjct: 434 LSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG 493
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH 120
+IH V+++G + + +AL+ MY+KCGS+D + VF + +N+ W S+I G A H
Sbjct: 494 EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKH 553
Query: 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEH 180
GFA L F++MI E V+PN VT++++LSAC+H GLV EG R F SM + I P++EH
Sbjct: 554 GFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEH 613
Query: 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240
Y CMVDLL +AGLL DA E I + FQ + ++W LG C++H N E+ +A +++ L+
Sbjct: 614 YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD 673
Query: 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKS 300
PN L N+YA +W E T++R MKE + K G SWIE+ K+++F D +
Sbjct: 674 PNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKE-GGCSWIEVGDKIHKFYVGDTA 732
Query: 301 HPASDEIYSSLSKLDEQLKLASYVPELEAML 331
HP + +IY L +L ++K YVP+ + +L
Sbjct: 733 HPNAHQIYDELDRLITEIKRCGYVPDTDLVL 763
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 137/286 (47%), Gaps = 10/286 (3%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLG 60
M ++++WT MIT Q REA+ F +M SG D+ T+++V SACA L L LG
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288
Query: 61 REIHLYVMQIGFDIDVYIGSALVDMYAKC---GSLDRSLLVFFKLREKNLFCWNSIIEGL 117
+++H + ++ G DV +LVDMYAKC GS+D VF ++ + ++ W ++I G
Sbjct: 289 KQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346
Query: 118 AVH-GFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175
+ A EA+ +F MI + +VEPN TF S AC + G ++ L +
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVG-KQVLGQAFKRGLA 405
Query: 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235
++ + K+ +EDA S + N V + L G + N E A ++E
Sbjct: 406 SNSSVANSVISMFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCRNLNFEQAFKLLSE 464
Query: 236 LMILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCP 280
+ E S + LL+ A V + +I + +LG+ P
Sbjct: 465 ITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 15/250 (6%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
RD++SW+ M+ CY N + +A+ F E G+ P+ V+ AC++ + +GR
Sbjct: 129 RDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVT 188
Query: 64 HLYVMQIG-FDIDVYIGSALVDMYAKC-GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHG 121
++M+ G F+ DV +G +L+DM+ K S + + VF K+ E N+ W +I G
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248
Query: 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181
F EA+ F M+ E + T SV SAC + G ++ S + +VE
Sbjct: 249 FPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG-KQLHSWAIRSGLVDDVE-- 305
Query: 182 GCMVDLLSKA---GLLEDALELIRSSKFQPNAVI-WGALLGGCKLHRNLEIAHIAVNELM 237
+VD+ +K G ++D ++ + + ++V+ W AL+ G + NL I + M
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVF--DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEM 363
Query: 238 I----LEPNN 243
I +EPN+
Sbjct: 364 ITQGHVEPNH 373
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 21 QFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG 79
R A+ A + M GI P D VT +++L +C LG+ +H +++ + D +
Sbjct: 41 DLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLY 100
Query: 80 SALVDMYAKCGSLDRSLLVFFKLR---EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136
++L+ +Y+K G ++ VF +R ++++ W++++ +G +A+ +F +
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160
Query: 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY------GC-MVDLLS 189
+ PN + +V+ AC+++ V GR +T G+ + + H+ GC ++D+
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGR-----VTLGFLM--KTGHFESDVCVGCSLIDMFV 213
Query: 190 KA-GLLEDALELIRSSKFQPNAVIWGALLGGC 220
K E+A ++ + N V W ++ C
Sbjct: 214 KGENSFENAYKVFDKMS-ELNVVTWTLMITRC 244
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 203/328 (61%), Gaps = 1/328 (0%)
Query: 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREI 63
+D++SWT+MI Y ++ ++RE F+E+ S P++ T A VL+ACA L +LG+++
Sbjct: 282 KDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQV 341
Query: 64 HLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123
H Y+ ++GFD + S+LVDMY KCG+++ + V + +L W S+I G A +G
Sbjct: 342 HGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQP 401
Query: 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183
EAL FD ++ +P+ VTF++VLSACTHAGLVE+G F S+T + ++ +HY C
Sbjct: 402 DEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTC 461
Query: 184 MVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243
+VDLL+++G E +I +P+ +W ++LGGC + N+++A A EL +EP N
Sbjct: 462 LVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPEN 521
Query: 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303
+ N+YA +W E K+R M+E+G+ KR PGSSW E++RK + F A+D SHP
Sbjct: 522 PVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKR-PGSSWTEIKRKRHVFIAADTSHPM 580
Query: 304 SDEIYSSLSKLDEQLKLASYVPELEAML 331
++I L +L +++K YVP +L
Sbjct: 581 YNQIVEFLRELRKKMKEEGYVPATSLVL 608
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 3/221 (1%)
Query: 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDL 59
M +D SWT M+T Y + Q EAL ++ M+ S P+ T++ ++A A + +
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236
Query: 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119
G+EIH ++++ G D D + S+L+DMY KCG +D + +F K+ EK++ W S+I+
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE 179
E ++F ++ PN TF VL+AC E G++ MT P
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT-RVGFDPYSF 355
Query: 180 HYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220
+VD+ +K G +E A ++ +P+ V W +L+GGC
Sbjct: 356 ASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGC 395
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 16/184 (8%)
Query: 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR 61
P D++SWT++I +QN Q EAL F+ + SG PD VT VLSAC H G ++ G
Sbjct: 381 PKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 440
Query: 62 EIHLYVMQ---IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGL 117
E + + + D Y + LVD+ A+ G ++ V ++ K + F W S++ G
Sbjct: 441 EFFYSITEKHRLSHTSDHY--TCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGC 498
Query: 118 AVHG---FAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAG-LVEEGRRRFLSMTCGY 172
+ +G A EA + +EP N VT++++ + AG EEG+ R G
Sbjct: 499 STYGNIDLAEEAAQELFK-----IEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGV 553
Query: 173 SITP 176
+ P
Sbjct: 554 TKRP 557
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYI 78
K REA+ K P T ++ C+ AL+ G+++H ++ GF + I
Sbjct: 67 QKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 122
Query: 79 GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133
+ L+ MYAKCGSL + VF ++ ++L WN ++ G A G EA +FD M
Sbjct: 123 WNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,101,070
Number of Sequences: 539616
Number of extensions: 4637243
Number of successful extensions: 15308
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 10771
Number of HSP's gapped (non-prelim): 2035
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)