Query 043124
Match_columns 331
No_of_seqs 418 out of 2876
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 13:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.1E-57 2.3E-62 418.7 39.7 330 1-331 285-614 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.7E-53 3.7E-58 399.5 39.0 328 1-331 450-777 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1E-47 2.3E-52 356.6 32.6 273 4-278 505-788 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.8E-47 6E-52 353.8 32.5 273 4-278 470-753 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.4E-45 5.2E-50 337.2 31.3 275 1-278 184-461 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.4E-45 7.5E-50 343.5 30.6 276 1-278 248-588 (857)
7 PRK11788 tetratricopeptide rep 99.9 1E-22 2.2E-27 176.2 27.4 287 4-295 67-368 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.6E-25 163.3 31.7 258 12-273 41-311 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 4.1E-20 8.8E-25 176.4 33.4 265 5-274 532-800 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 7.9E-20 1.7E-24 174.4 33.8 307 4-319 565-885 (899)
11 PRK15174 Vi polysaccharide exp 99.9 9.8E-18 2.1E-22 152.6 33.4 264 6-274 76-348 (656)
12 KOG4626 O-linked N-acetylgluco 99.8 6.1E-19 1.3E-23 149.3 22.3 307 6-325 116-473 (966)
13 KOG4626 O-linked N-acetylgluco 99.8 7.7E-19 1.7E-23 148.7 21.6 264 7-278 219-488 (966)
14 PRK15174 Vi polysaccharide exp 99.8 3.6E-17 7.8E-22 149.0 30.8 260 9-273 45-313 (656)
15 TIGR00990 3a0801s09 mitochondr 99.8 3.6E-17 7.7E-22 149.1 30.1 305 9-320 130-557 (615)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.7E-21 145.6 28.8 251 19-273 307-571 (615)
17 PF13429 TPR_15: Tetratricopep 99.8 2.4E-18 5.2E-23 141.7 11.2 257 11-272 13-276 (280)
18 PRK11447 cellulose synthase su 99.8 3.7E-15 8E-20 144.7 34.7 263 5-273 302-666 (1157)
19 KOG1126 DNA-binding cell divis 99.8 2.7E-16 5.8E-21 134.5 22.2 268 20-321 333-607 (638)
20 PRK11447 cellulose synthase su 99.7 2.3E-14 5E-19 139.2 32.6 252 14-274 359-701 (1157)
21 PRK09782 bacteriophage N4 rece 99.7 1.2E-14 2.7E-19 136.0 29.5 261 5-274 476-741 (987)
22 PRK10049 pgaA outer membrane p 99.7 9.9E-14 2.1E-18 129.2 34.4 263 6-272 83-421 (765)
23 PRK09782 bacteriophage N4 rece 99.7 7.6E-14 1.6E-18 130.8 31.3 228 40-274 476-707 (987)
24 PF13429 TPR_15: Tetratricopep 99.7 1.5E-16 3.3E-21 131.0 10.7 247 46-322 13-265 (280)
25 PRK10747 putative protoheme IX 99.7 2.5E-13 5.5E-18 117.1 29.1 247 19-273 97-357 (398)
26 PRK10049 pgaA outer membrane p 99.7 5.2E-13 1.1E-17 124.4 32.4 265 4-272 47-387 (765)
27 TIGR00540 hemY_coli hemY prote 99.7 3.1E-13 6.7E-18 117.1 28.6 261 9-271 85-362 (409)
28 PRK10747 putative protoheme IX 99.6 9.4E-13 2E-17 113.5 28.0 250 13-272 125-389 (398)
29 KOG1126 DNA-binding cell divis 99.6 9.8E-14 2.1E-18 119.1 21.2 255 10-276 357-623 (638)
30 KOG4422 Uncharacterized conser 99.6 4.4E-13 9.5E-18 109.6 22.4 261 7-305 208-488 (625)
31 PRK14574 hmsH outer membrane p 99.6 1.2E-11 2.6E-16 114.0 32.6 158 115-272 300-478 (822)
32 KOG1155 Anaphase-promoting com 99.6 2.4E-12 5.2E-17 106.2 24.8 255 14-272 235-494 (559)
33 TIGR02521 type_IV_pilW type IV 99.6 2.1E-12 4.7E-17 103.3 22.5 196 76-272 31-231 (234)
34 PRK14574 hmsH outer membrane p 99.6 3.2E-11 7E-16 111.2 32.2 141 11-154 73-215 (822)
35 TIGR00540 hemY_coli hemY prote 99.6 1.6E-11 3.5E-16 106.5 28.3 257 9-272 121-398 (409)
36 PRK12370 invasion protein regu 99.6 7.4E-12 1.6E-16 112.6 26.9 260 4-274 254-536 (553)
37 COG2956 Predicted N-acetylgluc 99.6 1.4E-11 3E-16 97.4 24.4 273 18-295 47-368 (389)
38 PF13041 PPR_2: PPR repeat fam 99.5 2.5E-14 5.4E-19 84.3 6.5 50 4-53 1-50 (50)
39 TIGR02521 type_IV_pilW type IV 99.5 9.2E-12 2E-16 99.6 23.4 199 39-240 29-233 (234)
40 KOG2003 TPR repeat-containing 99.5 1.6E-11 3.4E-16 101.5 23.3 242 15-260 428-710 (840)
41 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.7E-15 94.7 27.2 249 19-271 97-388 (400)
42 KOG4422 Uncharacterized conser 99.5 1.5E-11 3.2E-16 100.8 22.1 245 6-268 116-380 (625)
43 KOG4318 Bicoid mRNA stability 99.5 3.1E-12 6.7E-17 113.2 18.9 232 27-284 11-243 (1088)
44 KOG1840 Kinesin light chain [C 99.5 1.3E-11 2.9E-16 106.6 22.4 231 42-272 200-478 (508)
45 KOG1173 Anaphase-promoting com 99.5 1.4E-10 3E-15 98.2 27.6 260 6-271 244-516 (611)
46 KOG1129 TPR repeat-containing 99.5 4.9E-12 1.1E-16 100.1 17.6 225 44-273 226-458 (478)
47 KOG2076 RNA polymerase III tra 99.5 2.4E-10 5.1E-15 101.8 29.9 264 6-271 173-510 (895)
48 COG3071 HemY Uncharacterized e 99.4 3.3E-10 7.1E-15 92.2 25.6 223 9-238 121-389 (400)
49 PF13041 PPR_2: PPR repeat fam 99.4 5E-13 1.1E-17 78.7 6.7 50 105-154 1-50 (50)
50 KOG1155 Anaphase-promoting com 99.4 1.4E-10 2.9E-15 96.1 22.9 251 15-272 271-535 (559)
51 COG2956 Predicted N-acetylgluc 99.4 8.6E-11 1.9E-15 93.0 20.3 232 43-278 38-283 (389)
52 PRK12370 invasion protein regu 99.4 5.1E-11 1.1E-15 107.2 22.0 227 40-273 255-502 (553)
53 KOG1129 TPR repeat-containing 99.4 2.2E-11 4.7E-16 96.5 17.0 231 10-245 227-464 (478)
54 KOG1840 Kinesin light chain [C 99.4 5.4E-11 1.2E-15 102.9 20.4 231 8-238 201-478 (508)
55 KOG2076 RNA polymerase III tra 99.4 1.3E-09 2.8E-14 97.2 29.0 280 12-320 145-498 (895)
56 KOG0547 Translocase of outer m 99.4 4.8E-10 1E-14 93.6 24.6 307 8-320 117-552 (606)
57 PRK11189 lipoprotein NlpI; Pro 99.4 5.9E-10 1.3E-14 92.3 23.2 229 20-256 40-283 (296)
58 KOG2002 TPR-containing nuclear 99.4 3.7E-10 8.1E-15 101.3 23.1 267 4-273 450-745 (1018)
59 KOG2002 TPR-containing nuclear 99.4 2.8E-09 6E-14 95.9 28.2 269 3-273 267-559 (1018)
60 KOG0547 Translocase of outer m 99.4 1.8E-10 3.8E-15 96.1 18.8 218 50-272 335-565 (606)
61 KOG1174 Anaphase-promoting com 99.4 2.5E-09 5.4E-14 87.6 24.8 229 37-271 228-498 (564)
62 PRK11189 lipoprotein NlpI; Pro 99.3 3.6E-10 7.8E-15 93.5 20.7 213 54-274 39-266 (296)
63 KOG0495 HAT repeat protein [RN 99.3 6.5E-09 1.4E-13 89.9 27.9 262 6-273 516-782 (913)
64 KOG0495 HAT repeat protein [RN 99.3 5.8E-09 1.3E-13 90.2 27.2 266 9-285 587-889 (913)
65 KOG2003 TPR repeat-containing 99.3 1.6E-09 3.5E-14 89.8 21.9 150 120-272 503-688 (840)
66 COG3063 PilF Tfp pilus assembl 99.3 9E-10 2E-14 83.4 17.5 163 109-274 37-203 (250)
67 PF12569 NARP1: NMDA receptor- 99.3 7.3E-09 1.6E-13 90.9 26.0 259 13-276 11-294 (517)
68 COG3063 PilF Tfp pilus assembl 99.3 7.2E-09 1.6E-13 78.6 21.2 200 43-245 37-242 (250)
69 KOG1173 Anaphase-promoting com 99.2 4.6E-09 1E-13 89.3 21.7 246 3-251 275-530 (611)
70 KOG4318 Bicoid mRNA stability 99.2 1.2E-09 2.6E-14 97.3 18.8 249 3-282 22-273 (1088)
71 PF04733 Coatomer_E: Coatomer 99.2 6.9E-10 1.5E-14 90.7 14.9 246 13-273 8-265 (290)
72 KOG1915 Cell cycle control pro 99.2 8.7E-08 1.9E-12 80.2 25.5 266 3-274 171-501 (677)
73 KOG1125 TPR repeat-containing 99.2 6.6E-09 1.4E-13 88.6 19.4 251 51-321 295-558 (579)
74 KOG1174 Anaphase-promoting com 99.1 5.4E-08 1.2E-12 80.0 21.0 287 30-321 183-521 (564)
75 PF04733 Coatomer_E: Coatomer 99.1 1.1E-08 2.5E-13 83.7 17.0 227 8-245 37-271 (290)
76 cd05804 StaR_like StaR_like; a 99.1 3.2E-07 7E-12 78.5 26.7 258 14-274 51-337 (355)
77 KOG1070 rRNA processing protei 99.1 3.7E-08 8.1E-13 91.9 21.2 214 59-278 1443-1668(1710)
78 cd05804 StaR_like StaR_like; a 99.1 1.8E-06 3.9E-11 73.9 30.0 268 5-274 5-294 (355)
79 KOG0624 dsRNA-activated protei 99.0 2.1E-06 4.5E-11 69.3 25.0 190 11-209 43-255 (504)
80 KOG1915 Cell cycle control pro 99.0 1.9E-06 4.2E-11 72.4 25.8 256 17-277 84-354 (677)
81 PF12569 NARP1: NMDA receptor- 99.0 3.4E-07 7.4E-12 80.6 22.3 225 47-278 10-262 (517)
82 KOG4340 Uncharacterized conser 99.0 4.2E-07 9E-12 71.9 20.2 256 9-270 13-336 (459)
83 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.5E-12 81.2 18.2 250 13-266 292-564 (579)
84 TIGR03302 OM_YfiO outer membra 99.0 2.9E-07 6.3E-12 73.9 19.7 181 75-273 32-232 (235)
85 KOG1156 N-terminal acetyltrans 98.9 1.2E-06 2.5E-11 76.3 23.4 267 3-273 5-283 (700)
86 KOG4162 Predicted calmodulin-b 98.9 4.8E-06 1E-10 74.0 26.8 61 113-173 484-544 (799)
87 PRK14720 transcript cleavage f 98.9 1.2E-06 2.5E-11 81.1 22.7 229 3-255 28-268 (906)
88 PLN02789 farnesyltranstransfer 98.9 3.3E-06 7.1E-11 70.3 23.4 217 51-271 47-300 (320)
89 PRK15179 Vi polysaccharide bio 98.9 1.2E-06 2.6E-11 80.0 22.4 128 141-271 85-215 (694)
90 PRK15359 type III secretion sy 98.9 2.6E-07 5.7E-12 67.7 15.0 89 183-271 29-119 (144)
91 TIGR03302 OM_YfiO outer membra 98.9 5E-07 1.1E-11 72.5 17.9 59 147-205 171-230 (235)
92 KOG1128 Uncharacterized conser 98.9 5.9E-07 1.3E-11 79.1 18.9 194 73-273 395-616 (777)
93 PRK10370 formate-dependent nit 98.8 4.4E-07 9.5E-12 70.3 16.5 117 155-273 52-173 (198)
94 KOG4162 Predicted calmodulin-b 98.8 2.2E-06 4.7E-11 76.1 22.2 127 145-273 653-783 (799)
95 PF12854 PPR_1: PPR repeat 98.8 6.8E-09 1.5E-13 54.9 4.2 32 71-102 2-33 (34)
96 KOG1128 Uncharacterized conser 98.8 5.1E-07 1.1E-11 79.4 17.4 219 44-271 427-653 (777)
97 KOG1070 rRNA processing protei 98.8 4.2E-06 9E-11 78.9 24.0 241 24-267 1443-1694(1710)
98 PF12854 PPR_1: PPR repeat 98.8 6.1E-09 1.3E-13 55.1 3.6 31 3-33 4-34 (34)
99 PRK04841 transcriptional regul 98.8 6.4E-06 1.4E-10 79.6 25.9 263 13-275 459-762 (903)
100 PRK10370 formate-dependent nit 98.7 3.5E-06 7.6E-11 65.3 18.5 155 83-248 23-182 (198)
101 PLN02789 farnesyltranstransfer 98.7 3E-05 6.4E-10 64.6 24.7 236 8-248 39-311 (320)
102 COG5010 TadD Flp pilus assembl 98.7 1.3E-05 2.7E-10 62.6 20.8 151 80-233 70-225 (257)
103 KOG3081 Vesicle coat complex C 98.7 1.2E-05 2.7E-10 62.7 20.1 250 4-271 8-269 (299)
104 KOG0548 Molecular co-chaperone 98.7 4.5E-05 9.7E-10 65.3 25.0 160 110-273 227-421 (539)
105 COG5010 TadD Flp pilus assembl 98.7 5.4E-06 1.2E-10 64.5 17.9 160 106-269 66-227 (257)
106 PRK15359 type III secretion sy 98.7 8.7E-07 1.9E-11 65.0 13.1 122 128-255 14-137 (144)
107 KOG1914 mRNA cleavage and poly 98.7 0.0001 2.2E-09 63.3 25.8 119 158-278 347-469 (656)
108 KOG3060 Uncharacterized conser 98.6 1.6E-05 3.5E-10 61.6 18.9 191 53-246 24-227 (289)
109 KOG1156 N-terminal acetyltrans 98.6 4.5E-05 9.7E-10 66.8 23.7 271 3-278 72-439 (700)
110 PRK15179 Vi polysaccharide bio 98.6 1E-05 2.2E-10 74.1 20.6 144 37-184 82-228 (694)
111 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.6E-06 5.7E-11 72.3 15.7 127 78-208 171-298 (395)
112 KOG2047 mRNA splicing factor [ 98.6 0.00013 2.8E-09 64.0 25.6 261 8-276 104-509 (835)
113 KOG3785 Uncharacterized conser 98.6 9.8E-06 2.1E-10 65.9 17.2 212 55-274 268-491 (557)
114 PF13812 PPR_3: Pentatricopept 98.6 1.2E-07 2.6E-12 50.5 4.3 34 6-39 1-34 (34)
115 TIGR00756 PPR pentatricopeptid 98.6 1.1E-07 2.5E-12 51.0 4.2 35 7-41 1-35 (35)
116 PRK14720 transcript cleavage f 98.6 2.1E-05 4.6E-10 73.1 21.0 203 40-273 30-252 (906)
117 KOG3617 WD40 and TPR repeat-co 98.5 2.8E-05 6E-10 69.9 20.0 211 5-238 756-995 (1416)
118 KOG2376 Signal recognition par 98.5 2.3E-05 4.9E-10 67.8 18.8 120 14-136 20-139 (652)
119 PRK04841 transcriptional regul 98.5 0.00022 4.7E-09 69.1 28.3 263 11-273 414-720 (903)
120 KOG3785 Uncharacterized conser 98.5 9.4E-05 2E-09 60.4 20.8 247 18-272 163-456 (557)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 6.2E-06 1.3E-10 70.1 15.0 124 143-271 170-295 (395)
122 KOG0624 dsRNA-activated protei 98.5 0.00014 3.1E-09 59.1 21.6 229 14-246 114-377 (504)
123 KOG0548 Molecular co-chaperone 98.5 6.9E-05 1.5E-09 64.2 20.8 236 9-256 227-472 (539)
124 PF09976 TPR_21: Tetratricopep 98.5 1.9E-05 4.1E-10 58.1 15.3 124 8-133 14-144 (145)
125 TIGR02552 LcrH_SycD type III s 98.5 4.5E-06 9.7E-11 60.6 11.5 96 146-243 21-118 (135)
126 TIGR02552 LcrH_SycD type III s 98.5 1.1E-05 2.3E-10 58.6 13.4 95 179-273 18-114 (135)
127 KOG3081 Vesicle coat complex C 98.4 0.00011 2.3E-09 57.6 18.1 217 49-274 16-237 (299)
128 PRK15363 pathogenicity island 98.4 2.4E-05 5.1E-10 56.9 13.5 96 178-273 35-132 (157)
129 KOG4340 Uncharacterized conser 98.4 1.7E-05 3.7E-10 63.0 13.6 198 78-282 12-215 (459)
130 KOG2047 mRNA splicing factor [ 98.4 0.00064 1.4E-08 59.9 24.2 265 7-278 249-583 (835)
131 TIGR00756 PPR pentatricopeptid 98.4 7.9E-07 1.7E-11 47.6 4.5 33 109-141 2-34 (35)
132 KOG2376 Signal recognition par 98.4 0.00017 3.6E-09 62.7 20.4 219 46-277 17-257 (652)
133 COG4783 Putative Zn-dependent 98.4 0.00013 2.9E-09 61.9 19.2 121 151-273 315-437 (484)
134 PF13812 PPR_3: Pentatricopept 98.3 1.1E-06 2.3E-11 46.7 4.4 33 108-140 2-34 (34)
135 KOG3060 Uncharacterized conser 98.3 0.00015 3.3E-09 56.4 16.8 183 90-275 26-222 (289)
136 PF09976 TPR_21: Tetratricopep 98.3 9.9E-05 2.2E-09 54.2 15.6 115 120-236 24-144 (145)
137 KOG3617 WD40 and TPR repeat-co 98.3 3.5E-05 7.6E-10 69.4 15.1 241 5-271 725-994 (1416)
138 KOG3616 Selective LIM binding 98.3 0.00012 2.7E-09 65.2 18.0 140 79-235 768-907 (1636)
139 PLN03088 SGT1, suppressor of 98.3 2E-05 4.2E-10 67.1 12.9 97 149-247 9-107 (356)
140 KOG1127 TPR repeat-containing 98.3 7E-05 1.5E-09 68.8 16.7 180 91-271 473-657 (1238)
141 KOG2053 Mitochondrial inherita 98.3 0.0016 3.5E-08 59.5 25.0 223 16-243 19-259 (932)
142 KOG0985 Vesicle coat protein c 98.3 0.00055 1.2E-08 63.4 21.9 221 7-256 1105-1325(1666)
143 PF14559 TPR_19: Tetratricopep 98.3 2.7E-06 5.8E-11 53.5 5.6 52 221-272 2-53 (68)
144 PF01535 PPR: PPR repeat; Int 98.3 1.4E-06 3.1E-11 45.1 3.5 31 7-37 1-31 (31)
145 PF04840 Vps16_C: Vps16, C-ter 98.2 0.0019 4.1E-08 53.9 23.0 110 144-270 179-288 (319)
146 cd00189 TPR Tetratricopeptide 98.2 2.4E-05 5.1E-10 52.4 9.9 93 181-273 3-97 (100)
147 KOG0553 TPR repeat-containing 98.2 1.8E-05 3.8E-10 63.0 10.1 101 151-253 90-192 (304)
148 COG4783 Putative Zn-dependent 98.2 0.00077 1.7E-08 57.5 19.7 110 52-163 317-429 (484)
149 COG3898 Uncharacterized membra 98.2 0.0026 5.7E-08 52.9 22.9 247 18-278 132-397 (531)
150 PRK02603 photosystem I assembl 98.2 9.1E-05 2E-09 56.2 13.1 109 44-156 38-165 (172)
151 PF13414 TPR_11: TPR repeat; P 98.2 8.3E-06 1.8E-10 51.4 6.2 65 209-273 2-67 (69)
152 TIGR02795 tol_pal_ybgF tol-pal 98.2 5.4E-05 1.2E-09 53.4 11.2 92 182-273 6-105 (119)
153 KOG3616 Selective LIM binding 98.2 0.00069 1.5E-08 60.7 19.6 74 118-203 743-816 (1636)
154 KOG1130 Predicted G-alpha GTPa 98.1 4.8E-05 1E-09 63.2 11.2 261 14-275 25-346 (639)
155 PF13432 TPR_16: Tetratricopep 98.1 1.3E-05 2.7E-10 49.9 6.1 58 216-273 3-60 (65)
156 PF14938 SNAP: Soluble NSF att 98.1 0.00061 1.3E-08 56.2 17.7 93 110-203 117-221 (282)
157 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.0001 2.2E-09 52.0 11.5 101 146-246 6-112 (119)
158 cd00189 TPR Tetratricopeptide 98.1 5.7E-05 1.2E-09 50.4 9.8 92 9-102 3-94 (100)
159 PF12895 Apc3: Anaphase-promot 98.1 5E-06 1.1E-10 54.8 4.1 80 156-235 3-83 (84)
160 PF05843 Suf: Suppressor of fo 98.1 0.00014 3E-09 59.8 13.3 128 7-136 2-136 (280)
161 PF01535 PPR: PPR repeat; Int 98.1 6.8E-06 1.5E-10 42.5 3.6 29 109-137 2-30 (31)
162 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.5E-10 52.3 6.0 81 120-203 2-83 (84)
163 PF05843 Suf: Suppressor of fo 98.0 0.00036 7.8E-09 57.4 15.2 132 109-243 3-140 (280)
164 CHL00033 ycf3 photosystem I as 98.0 0.00019 4.1E-09 54.3 12.6 92 41-132 35-138 (168)
165 PRK10153 DNA-binding transcrip 98.0 0.00066 1.4E-08 60.6 17.7 138 106-245 336-488 (517)
166 PF08579 RPM2: Mitochondrial r 98.0 9.8E-05 2.1E-09 50.0 9.4 81 109-190 27-116 (120)
167 KOG0550 Molecular chaperone (D 98.0 0.00067 1.4E-08 56.6 16.1 257 13-275 56-352 (486)
168 KOG0553 TPR repeat-containing 98.0 9.3E-05 2E-09 59.0 10.8 102 114-219 88-191 (304)
169 KOG0985 Vesicle coat protein c 98.0 0.0024 5.1E-08 59.4 20.8 236 3-265 1130-1375(1666)
170 PRK02603 photosystem I assembl 98.0 0.00014 3E-09 55.3 11.5 82 178-259 35-121 (172)
171 PF14938 SNAP: Soluble NSF att 98.0 0.00077 1.7E-08 55.6 16.5 124 145-269 117-262 (282)
172 PF12688 TPR_5: Tetratrico pep 98.0 0.0003 6.5E-09 49.3 11.8 106 12-117 7-116 (120)
173 PF08579 RPM2: Mitochondrial r 98.0 0.00019 4.1E-09 48.6 10.1 79 10-88 29-116 (120)
174 PF06239 ECSIT: Evolutionarily 98.0 7.3E-05 1.6E-09 57.0 9.0 89 3-91 44-153 (228)
175 CHL00033 ycf3 photosystem I as 98.0 0.00018 3.9E-09 54.4 11.3 94 177-270 34-139 (168)
176 PF10037 MRP-S27: Mitochondria 98.0 0.0003 6.5E-09 60.4 13.5 120 71-191 61-186 (429)
177 PLN03088 SGT1, suppressor of 98.0 0.00026 5.6E-09 60.4 13.2 104 112-218 7-111 (356)
178 KOG1127 TPR repeat-containing 97.9 0.0015 3.3E-08 60.5 17.3 174 22-202 474-654 (1238)
179 PF13371 TPR_9: Tetratricopept 97.9 6.5E-05 1.4E-09 47.9 6.5 57 218-274 3-59 (73)
180 COG4700 Uncharacterized protei 97.9 0.0053 1.2E-07 45.8 16.6 147 47-200 62-215 (251)
181 PRK15363 pathogenicity island 97.8 0.00053 1.2E-08 49.9 11.0 94 42-136 36-132 (157)
182 PRK10153 DNA-binding transcrip 97.8 0.0025 5.4E-08 57.0 17.5 58 143-203 421-478 (517)
183 COG4700 Uncharacterized protei 97.8 0.0071 1.5E-07 45.2 16.7 131 138-270 85-219 (251)
184 COG4235 Cytochrome c biogenesi 97.8 0.0022 4.8E-08 51.6 15.0 101 175-275 153-258 (287)
185 PF10037 MRP-S27: Mitochondria 97.8 0.00065 1.4E-08 58.4 12.5 120 36-155 61-186 (429)
186 PRK10866 outer membrane biogen 97.8 0.0037 7.9E-08 50.2 16.2 173 82-271 38-239 (243)
187 PF13432 TPR_16: Tetratricopep 97.8 0.00019 4.1E-09 44.5 7.0 61 184-244 3-65 (65)
188 KOG1914 mRNA cleavage and poly 97.7 0.0069 1.5E-07 52.6 17.6 205 20-227 307-527 (656)
189 PF13281 DUF4071: Domain of un 97.7 0.007 1.5E-07 51.1 17.4 164 76-242 141-337 (374)
190 PF06239 ECSIT: Evolutionarily 97.7 0.00065 1.4E-08 52.0 9.8 89 104-193 44-153 (228)
191 PRK10866 outer membrane biogen 97.6 0.022 4.7E-07 45.8 21.9 176 40-236 31-238 (243)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.0037 7.9E-08 43.9 12.5 109 111-220 5-116 (120)
193 PF07079 DUF1347: Protein of u 97.6 0.041 8.9E-07 47.0 23.0 61 210-271 460-522 (549)
194 PF13414 TPR_11: TPR repeat; P 97.5 0.00049 1.1E-08 43.2 6.7 65 5-70 2-67 (69)
195 KOG2280 Vacuolar assembly/sort 97.5 0.025 5.4E-07 51.2 18.9 250 5-270 506-796 (829)
196 PRK10803 tol-pal system protei 97.5 0.0013 2.9E-08 53.2 10.2 93 180-272 145-245 (263)
197 KOG2796 Uncharacterized conser 97.5 0.0048 1E-07 48.7 12.5 140 22-169 165-313 (366)
198 PF13525 YfiO: Outer membrane 97.5 0.03 6.6E-07 43.7 20.0 184 5-197 4-197 (203)
199 PF03704 BTAD: Bacterial trans 97.5 0.00065 1.4E-08 50.0 7.6 67 212-278 64-135 (146)
200 PF14559 TPR_19: Tetratricopep 97.5 0.00085 1.8E-08 41.9 7.1 51 118-169 2-52 (68)
201 KOG2796 Uncharacterized conser 97.5 0.022 4.9E-07 45.0 15.8 135 109-244 179-320 (366)
202 KOG2053 Mitochondrial inherita 97.4 0.11 2.3E-06 48.3 24.5 197 4-204 40-252 (932)
203 PF04840 Vps16_C: Vps16, C-ter 97.4 0.059 1.3E-06 45.1 20.8 109 109-235 179-287 (319)
204 PF13424 TPR_12: Tetratricopep 97.4 0.00041 9E-09 44.8 4.8 61 211-271 6-73 (78)
205 PRK15331 chaperone protein Sic 97.4 0.0038 8.1E-08 45.9 10.0 88 185-272 44-133 (165)
206 PF12921 ATP13: Mitochondrial 97.3 0.0039 8.5E-08 44.2 9.7 53 137-189 47-99 (126)
207 PF13525 YfiO: Outer membrane 97.3 0.038 8.3E-07 43.1 16.1 49 216-264 147-198 (203)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0015 3.2E-08 55.9 8.6 97 177-276 74-177 (453)
209 PF13431 TPR_17: Tetratricopep 97.3 0.00019 4.1E-09 37.8 2.0 32 233-264 2-33 (34)
210 KOG0543 FKBP-type peptidyl-pro 97.2 0.0042 9.1E-08 52.0 10.2 60 212-271 259-318 (397)
211 PF13428 TPR_14: Tetratricopep 97.2 0.00084 1.8E-08 37.8 4.3 41 212-252 3-43 (44)
212 KOG1585 Protein required for f 97.2 0.073 1.6E-06 41.8 16.2 201 43-268 33-251 (308)
213 PRK10803 tol-pal system protei 97.2 0.0081 1.8E-07 48.7 11.3 94 43-136 145-246 (263)
214 KOG2041 WD40 repeat protein [G 97.1 0.086 1.9E-06 47.7 17.5 90 177-273 851-952 (1189)
215 KOG1538 Uncharacterized conser 97.1 0.17 3.7E-06 45.5 18.8 92 179-276 748-849 (1081)
216 PF03704 BTAD: Bacterial trans 97.1 0.0091 2E-07 43.8 9.7 69 9-78 65-138 (146)
217 COG4235 Cytochrome c biogenesi 97.0 0.036 7.8E-07 44.8 13.4 110 106-218 155-268 (287)
218 PF13424 TPR_12: Tetratricopep 97.0 0.002 4.4E-08 41.5 5.0 63 7-69 6-74 (78)
219 PF10300 DUF3808: Protein of u 97.0 0.12 2.6E-06 46.0 17.3 81 91-171 248-334 (468)
220 COG3898 Uncharacterized membra 97.0 0.19 4E-06 42.4 25.1 209 53-271 132-356 (531)
221 KOG3941 Intermediate in Toll s 96.9 0.0087 1.9E-07 47.7 8.9 89 3-91 64-173 (406)
222 PF13371 TPR_9: Tetratricopept 96.9 0.0058 1.3E-07 38.7 6.8 54 115-169 3-56 (73)
223 PF13281 DUF4071: Domain of un 96.9 0.15 3.2E-06 43.3 16.2 166 108-274 142-335 (374)
224 COG3118 Thioredoxin domain-con 96.8 0.21 4.5E-06 40.5 16.7 175 92-268 119-296 (304)
225 PF10300 DUF3808: Protein of u 96.8 0.22 4.8E-06 44.3 17.5 158 114-274 195-377 (468)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.04 8.8E-07 47.4 11.9 63 40-104 74-140 (453)
227 KOG0543 FKBP-type peptidyl-pro 96.7 0.028 6.2E-07 47.3 10.7 95 179-273 258-355 (397)
228 PF09205 DUF1955: Domain of un 96.7 0.12 2.6E-06 36.4 14.1 141 118-277 13-153 (161)
229 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.12 2.6E-06 44.3 14.1 125 43-169 399-529 (660)
230 PF04053 Coatomer_WDAD: Coatom 96.6 0.11 2.5E-06 45.5 14.5 162 14-208 269-432 (443)
231 KOG1941 Acetylcholine receptor 96.6 0.056 1.2E-06 44.9 11.5 222 17-238 17-274 (518)
232 PF12921 ATP13: Mitochondrial 96.6 0.047 1E-06 38.7 9.7 82 5-86 1-98 (126)
233 PRK15331 chaperone protein Sic 96.6 0.037 8E-07 40.8 9.3 86 49-135 45-133 (165)
234 PF13428 TPR_14: Tetratricopep 96.6 0.0062 1.3E-07 34.2 4.3 28 245-272 2-29 (44)
235 COG4785 NlpI Lipoprotein NlpI, 96.5 0.25 5.4E-06 38.2 13.5 163 107-275 99-268 (297)
236 KOG2041 WD40 repeat protein [G 96.4 0.3 6.4E-06 44.4 15.4 206 38-270 689-904 (1189)
237 PF13512 TPR_18: Tetratricopep 96.3 0.22 4.7E-06 35.9 11.6 62 185-246 17-83 (142)
238 COG1729 Uncharacterized protei 96.3 0.051 1.1E-06 43.4 9.2 92 180-272 144-243 (262)
239 KOG1130 Predicted G-alpha GTPa 96.2 0.092 2E-06 44.5 10.6 231 8-238 57-343 (639)
240 smart00299 CLH Clathrin heavy 96.1 0.33 7.1E-06 35.2 15.3 126 110-255 10-136 (140)
241 KOG3941 Intermediate in Toll s 96.1 0.078 1.7E-06 42.6 9.3 98 97-195 55-175 (406)
242 COG4105 ComL DNA uptake lipopr 96.1 0.55 1.2E-05 37.4 19.5 158 115-273 42-233 (254)
243 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.9 2E-05 39.3 18.3 128 144-273 399-531 (660)
244 KOG1941 Acetylcholine receptor 96.0 0.36 7.8E-06 40.4 12.9 216 53-268 18-270 (518)
245 COG0457 NrfG FOG: TPR repeat [ 96.0 0.57 1.2E-05 36.6 26.7 193 77-271 60-263 (291)
246 PF07079 DUF1347: Protein of u 95.9 0.97 2.1E-05 39.1 19.7 202 6-215 298-530 (549)
247 PF04053 Coatomer_WDAD: Coatom 95.9 0.71 1.5E-05 40.7 15.4 135 6-169 295-429 (443)
248 COG1729 Uncharacterized protei 95.8 0.098 2.1E-06 41.8 9.0 82 89-170 154-243 (262)
249 COG3629 DnrI DNA-binding trans 95.8 0.078 1.7E-06 43.0 8.4 68 211-278 154-226 (280)
250 COG0457 NrfG FOG: TPR repeat [ 95.8 0.7 1.5E-05 36.1 23.9 222 19-242 36-268 (291)
251 KOG2610 Uncharacterized conser 95.7 0.42 9.1E-06 39.6 12.2 148 19-167 116-272 (491)
252 PF00515 TPR_1: Tetratricopept 95.7 0.03 6.6E-07 29.1 4.1 32 211-242 2-33 (34)
253 PF13170 DUF4003: Protein of u 95.7 0.95 2E-05 37.6 14.6 126 57-185 78-224 (297)
254 PF07719 TPR_2: Tetratricopept 95.7 0.044 9.5E-07 28.4 4.7 32 212-243 3-34 (34)
255 KOG0550 Molecular chaperone (D 95.7 1.2 2.6E-05 38.1 17.8 148 52-203 180-346 (486)
256 KOG2610 Uncharacterized conser 95.7 0.76 1.6E-05 38.1 13.4 114 120-236 116-235 (491)
257 smart00299 CLH Clathrin heavy 95.6 0.56 1.2E-05 34.0 16.0 43 10-53 11-53 (140)
258 PRK11906 transcriptional regul 95.6 0.45 9.7E-06 41.4 12.7 131 143-273 252-401 (458)
259 KOG4555 TPR repeat-containing 95.6 0.34 7.5E-06 34.2 9.7 88 49-137 51-145 (175)
260 PF08631 SPO22: Meiosis protei 95.5 1.2 2.5E-05 36.8 23.8 53 17-69 4-64 (278)
261 PF10602 RPN7: 26S proteasome 95.4 0.57 1.2E-05 35.6 11.4 60 110-169 39-100 (177)
262 KOG2114 Vacuolar assembly/sort 95.2 1.6 3.5E-05 40.8 15.1 23 80-102 435-457 (933)
263 COG4649 Uncharacterized protei 95.1 0.94 2E-05 33.8 11.2 128 109-238 61-195 (221)
264 KOG4555 TPR repeat-containing 95.0 0.21 4.6E-06 35.2 7.3 88 187-274 52-145 (175)
265 PF09205 DUF1955: Domain of un 94.8 0.94 2E-05 32.1 11.7 136 17-174 13-151 (161)
266 PF13176 TPR_7: Tetratricopept 94.8 0.078 1.7E-06 28.1 4.0 25 8-32 1-25 (36)
267 COG3118 Thioredoxin domain-con 94.8 1.9 4E-05 35.3 17.6 140 50-192 143-286 (304)
268 PF10602 RPN7: 26S proteasome 94.7 0.67 1.4E-05 35.2 10.3 61 43-103 38-100 (177)
269 PF13176 TPR_7: Tetratricopept 94.7 0.09 2E-06 27.8 4.0 26 109-134 1-26 (36)
270 KOG1585 Protein required for f 94.7 1.7 3.7E-05 34.5 16.1 203 8-233 33-250 (308)
271 PRK11906 transcriptional regul 94.7 2.8 6E-05 36.7 15.5 113 56-169 273-399 (458)
272 PF02284 COX5A: Cytochrome c o 94.6 0.33 7.2E-06 32.5 7.2 62 123-186 26-87 (108)
273 KOG2114 Vacuolar assembly/sort 94.6 4 8.7E-05 38.3 16.3 214 8-236 285-516 (933)
274 COG3629 DnrI DNA-binding trans 94.6 0.5 1.1E-05 38.5 9.7 79 108-187 154-236 (280)
275 PF09613 HrpB1_HrpK: Bacterial 94.6 0.63 1.4E-05 34.3 9.2 58 189-246 21-80 (160)
276 KOG3364 Membrane protein invol 94.5 0.85 1.8E-05 32.4 9.2 91 207-324 29-124 (149)
277 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.25 5.3E-06 28.9 5.7 49 248-323 5-53 (53)
278 PF00637 Clathrin: Region in C 94.4 0.095 2.1E-06 38.2 5.0 86 11-103 12-97 (143)
279 PF13181 TPR_8: Tetratricopept 94.4 0.12 2.5E-06 26.8 4.0 31 212-242 3-33 (34)
280 PF13512 TPR_18: Tetratricopep 94.4 1.4 3E-05 31.9 12.8 77 13-89 17-95 (142)
281 PF08631 SPO22: Meiosis protei 94.3 2.6 5.6E-05 34.8 23.0 215 52-271 4-273 (278)
282 PF04184 ST7: ST7 protein; In 94.1 3.9 8.5E-05 36.1 17.6 76 108-184 260-337 (539)
283 KOG1920 IkappaB kinase complex 94.1 6.5 0.00014 38.5 22.0 112 110-237 942-1053(1265)
284 COG4105 ComL DNA uptake lipopr 94.1 2.5 5.5E-05 33.8 19.6 57 147-203 172-229 (254)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 94.0 0.51 1.1E-05 31.3 7.0 63 122-186 22-84 (103)
286 KOG4234 TPR repeat-containing 94.0 0.36 7.8E-06 36.9 7.2 103 150-252 103-210 (271)
287 KOG4648 Uncharacterized conser 94.0 0.13 2.8E-06 42.6 5.2 107 150-263 105-214 (536)
288 PF09613 HrpB1_HrpK: Bacterial 94.0 1.9 4E-05 31.9 12.4 109 153-265 21-130 (160)
289 PF02259 FAT: FAT domain; Int 93.9 3.6 7.8E-05 35.1 19.3 236 13-256 5-304 (352)
290 KOG1586 Protein required for f 93.9 2.5 5.5E-05 33.3 12.4 53 220-272 164-223 (288)
291 KOG1920 IkappaB kinase complex 93.9 5.4 0.00012 39.1 15.9 79 114-204 972-1052(1265)
292 KOG2280 Vacuolar assembly/sort 93.8 5.7 0.00012 36.9 22.4 103 163-271 669-771 (829)
293 TIGR02561 HrpB1_HrpK type III 93.8 0.57 1.2E-05 34.0 7.5 55 190-244 22-78 (153)
294 PF07035 Mic1: Colon cancer-as 93.7 2.2 4.8E-05 31.9 14.2 132 26-169 14-147 (167)
295 PF13170 DUF4003: Protein of u 93.7 3.6 7.7E-05 34.3 13.4 126 22-149 78-224 (297)
296 KOG1258 mRNA processing protei 93.7 5.1 0.00011 36.1 18.5 181 75-258 296-489 (577)
297 PF13431 TPR_17: Tetratricopep 93.4 0.16 3.6E-06 26.4 3.4 31 65-96 3-33 (34)
298 KOG0276 Vesicle coat complex C 93.3 3.2 6.9E-05 37.5 12.6 150 87-269 597-746 (794)
299 PF04184 ST7: ST7 protein; In 93.2 5.7 0.00012 35.1 17.6 98 146-243 263-379 (539)
300 PF07035 Mic1: Colon cancer-as 93.2 2.8 6E-05 31.4 14.5 137 127-276 14-152 (167)
301 PF13374 TPR_10: Tetratricopep 93.0 0.3 6.4E-06 26.5 4.3 27 212-238 4-30 (42)
302 PF11207 DUF2989: Protein of u 92.9 2 4.4E-05 33.0 9.7 67 59-126 124-197 (203)
303 PF13174 TPR_6: Tetratricopept 92.7 0.29 6.3E-06 24.9 3.8 27 216-242 6-32 (33)
304 COG2976 Uncharacterized protei 92.4 4 8.7E-05 31.2 12.3 85 151-240 98-189 (207)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1.4 3E-05 29.3 7.0 62 21-83 22-83 (103)
306 KOG1538 Uncharacterized conser 92.2 9.2 0.0002 35.1 15.0 169 12-202 638-828 (1081)
307 COG4649 Uncharacterized protei 92.1 4 8.6E-05 30.7 14.3 118 53-170 70-195 (221)
308 KOG1258 mRNA processing protei 91.9 9.4 0.0002 34.5 23.4 96 178-273 297-395 (577)
309 PF02284 COX5A: Cytochrome c o 91.7 1.7 3.6E-05 29.3 7.0 60 24-84 28-87 (108)
310 PF13374 TPR_10: Tetratricopep 91.5 0.55 1.2E-05 25.4 4.2 28 7-34 3-30 (42)
311 PF00637 Clathrin: Region in C 91.5 0.1 2.2E-06 38.1 1.4 129 46-193 12-140 (143)
312 COG2976 Uncharacterized protei 91.4 5.2 0.00011 30.6 14.7 53 84-136 134-188 (207)
313 PF00515 TPR_1: Tetratricopept 91.4 0.61 1.3E-05 24.0 4.1 28 8-35 3-30 (34)
314 COG3947 Response regulator con 91.2 1.2 2.6E-05 36.2 7.0 154 123-278 149-352 (361)
315 TIGR02508 type_III_yscG type I 91.0 3.4 7.4E-05 27.7 9.4 88 56-147 20-107 (115)
316 PF07719 TPR_2: Tetratricopept 90.9 0.46 1E-05 24.3 3.3 29 245-273 2-30 (34)
317 KOG4570 Uncharacterized conser 90.4 3.3 7.1E-05 34.2 8.9 99 71-170 59-163 (418)
318 KOG4234 TPR repeat-containing 90.3 7 0.00015 30.2 10.2 93 114-210 102-201 (271)
319 TIGR02561 HrpB1_HrpK type III 90.2 5.7 0.00012 29.0 11.0 64 53-118 22-87 (153)
320 PF11207 DUF2989: Protein of u 90.1 6.3 0.00014 30.4 9.8 73 124-197 123-197 (203)
321 PF02259 FAT: FAT domain; Int 89.9 11 0.00024 32.0 20.6 185 48-238 5-212 (352)
322 KOG4648 Uncharacterized conser 89.9 1.5 3.3E-05 36.5 6.8 88 113-210 103-198 (536)
323 COG5159 RPN6 26S proteasome re 89.7 10 0.00022 31.1 11.9 53 12-64 9-68 (421)
324 KOG4570 Uncharacterized conser 89.6 9.6 0.00021 31.7 10.9 92 109-203 66-160 (418)
325 COG1747 Uncharacterized N-term 89.6 15 0.00032 32.9 22.7 177 73-256 63-251 (711)
326 PF07721 TPR_4: Tetratricopept 89.5 0.54 1.2E-05 22.6 2.6 22 247-268 4-25 (26)
327 KOG0890 Protein kinase of the 89.3 34 0.00075 36.7 21.4 66 210-277 1670-1735(2382)
328 KOG4642 Chaperone-dependent E3 89.3 1.3 2.7E-05 35.0 5.6 84 152-238 20-106 (284)
329 PRK10941 hypothetical protein; 89.3 3.4 7.4E-05 33.8 8.4 61 213-273 184-244 (269)
330 COG4455 ImpE Protein of avirul 89.2 2.5 5.4E-05 33.0 7.1 77 110-187 4-81 (273)
331 COG4455 ImpE Protein of avirul 88.8 2.1 4.5E-05 33.4 6.4 63 181-243 4-68 (273)
332 PF14853 Fis1_TPR_C: Fis1 C-te 88.7 2.5 5.5E-05 24.7 5.4 32 215-246 6-37 (53)
333 COG1747 Uncharacterized N-term 88.4 18 0.00039 32.3 18.3 173 7-188 67-249 (711)
334 smart00028 TPR Tetratricopepti 88.2 1.4 3E-05 21.4 4.0 28 214-241 5-32 (34)
335 PF07163 Pex26: Pex26 protein; 88.1 8.4 0.00018 31.4 9.5 85 46-130 88-181 (309)
336 KOG0276 Vesicle coat complex C 88.1 21 0.00045 32.6 13.0 155 18-209 598-752 (794)
337 PRK11619 lytic murein transgly 87.9 24 0.00052 33.2 24.7 244 13-271 106-373 (644)
338 PF13181 TPR_8: Tetratricopept 87.8 1.8 3.8E-05 22.1 4.1 28 109-136 3-30 (34)
339 TIGR03504 FimV_Cterm FimV C-te 87.5 1.1 2.4E-05 24.9 3.3 26 249-274 4-29 (44)
340 PF13174 TPR_6: Tetratricopept 87.2 0.82 1.8E-05 23.1 2.6 27 247-273 3-29 (33)
341 PRK15180 Vi polysaccharide bio 87.2 12 0.00027 33.0 10.6 125 152-278 299-425 (831)
342 KOG4077 Cytochrome c oxidase, 86.9 5 0.00011 28.2 6.7 71 125-206 67-137 (149)
343 cd08819 CARD_MDA5_2 Caspase ac 85.9 7.5 0.00016 25.4 6.8 65 61-127 22-86 (88)
344 COG4785 NlpI Lipoprotein NlpI, 85.6 16 0.00034 28.8 16.3 180 52-240 76-267 (297)
345 PF09477 Type_III_YscG: Bacter 85.5 9.4 0.0002 26.1 10.0 89 54-146 19-107 (116)
346 TIGR03504 FimV_Cterm FimV C-te 85.3 2.8 6.2E-05 23.3 4.1 25 113-137 5-29 (44)
347 PF10579 Rapsyn_N: Rapsyn N-te 84.8 3.5 7.7E-05 26.3 4.8 47 154-200 18-65 (80)
348 PF13929 mRNA_stabil: mRNA sta 84.1 22 0.00048 29.3 13.7 115 122-236 143-264 (292)
349 KOG1464 COP9 signalosome, subu 84.0 22 0.00047 29.0 15.6 222 10-238 69-331 (440)
350 KOG2300 Uncharacterized conser 83.8 31 0.00068 30.7 18.1 154 113-268 329-509 (629)
351 PRK15180 Vi polysaccharide bio 83.7 6.6 0.00014 34.6 7.5 120 14-136 297-420 (831)
352 PF04097 Nic96: Nup93/Nic96; 83.3 34 0.00074 32.0 12.6 19 13-31 265-283 (613)
353 PRK09687 putative lyase; Provi 83.2 25 0.00054 29.1 24.0 234 3-255 34-278 (280)
354 PF07163 Pex26: Pex26 protein; 83.2 21 0.00045 29.3 9.5 52 149-201 125-181 (309)
355 PF08311 Mad3_BUB1_I: Mad3/BUB 82.6 14 0.00031 26.2 7.9 42 228-269 81-124 (126)
356 PF13929 mRNA_stabil: mRNA sta 82.4 26 0.00057 28.8 12.3 85 105-189 200-289 (292)
357 PRK09687 putative lyase; Provi 82.4 27 0.00058 28.9 27.2 219 38-274 34-264 (280)
358 KOG2066 Vacuolar assembly/sort 82.2 46 0.001 31.5 12.5 52 83-134 363-419 (846)
359 PF04910 Tcf25: Transcriptiona 82.1 32 0.0007 29.7 13.4 56 217-272 110-167 (360)
360 COG3947 Response regulator con 82.1 13 0.00028 30.6 8.1 57 45-102 283-339 (361)
361 KOG0686 COP9 signalosome, subu 81.6 34 0.00075 29.6 14.9 172 43-218 152-352 (466)
362 PF14561 TPR_20: Tetratricopep 81.5 13 0.00028 24.6 7.3 35 237-271 15-49 (90)
363 PF10579 Rapsyn_N: Rapsyn N-te 81.3 1.9 4.1E-05 27.5 2.6 47 221-267 17-66 (80)
364 KOG1550 Extracellular protein 81.1 46 0.00099 30.7 16.3 181 92-278 228-431 (552)
365 smart00386 HAT HAT (Half-A-TPR 81.0 4.2 9E-05 20.1 3.7 29 224-252 1-29 (33)
366 COG2909 MalT ATP-dependent tra 81.0 55 0.0012 31.6 21.5 215 52-269 426-684 (894)
367 PF13762 MNE1: Mitochondrial s 80.0 21 0.00045 26.1 8.6 83 7-89 40-128 (145)
368 KOG1498 26S proteasome regulat 78.9 42 0.00091 29.0 17.8 244 54-330 25-293 (439)
369 PF06552 TOM20_plant: Plant sp 78.6 20 0.00044 27.2 7.7 46 226-278 96-141 (186)
370 KOG1464 COP9 signalosome, subu 78.2 36 0.00078 27.8 16.5 194 3-197 23-250 (440)
371 KOG4077 Cytochrome c oxidase, 78.0 19 0.00041 25.5 6.8 46 59-104 67-112 (149)
372 KOG0686 COP9 signalosome, subu 77.7 47 0.001 28.9 14.5 158 76-238 150-332 (466)
373 KOG4279 Serine/threonine prote 77.5 67 0.0014 30.5 12.0 181 60-243 182-399 (1226)
374 COG5159 RPN6 26S proteasome re 76.7 41 0.0009 27.7 10.4 117 51-167 13-150 (421)
375 PF10366 Vps39_1: Vacuolar sor 76.3 22 0.00048 24.4 8.1 27 109-135 41-67 (108)
376 PF13762 MNE1: Mitochondrial s 76.1 28 0.0006 25.4 10.5 77 79-155 42-128 (145)
377 KOG2063 Vacuolar assembly/sort 75.6 84 0.0018 30.7 12.9 163 109-272 506-712 (877)
378 KOG1586 Protein required for f 75.5 40 0.00087 27.0 14.7 99 148-246 119-231 (288)
379 PF00244 14-3-3: 14-3-3 protei 75.2 41 0.00089 27.0 10.5 59 11-69 6-65 (236)
380 KOG1550 Extracellular protein 74.8 71 0.0015 29.5 20.3 246 16-273 259-538 (552)
381 KOG4507 Uncharacterized conser 74.6 12 0.00027 33.9 6.5 95 156-251 621-717 (886)
382 PF09670 Cas_Cas02710: CRISPR- 74.4 58 0.0013 28.4 12.1 55 114-169 138-196 (379)
383 PF14432 DYW_deaminase: DYW fa 74.3 4.1 8.8E-05 28.5 3.0 38 281-330 2-39 (116)
384 PF08424 NRDE-2: NRDE-2, neces 74.2 53 0.0012 27.8 14.4 96 4-101 17-127 (321)
385 PRK10564 maltose regulon perip 74.1 8.6 0.00019 31.7 5.2 41 109-149 259-299 (303)
386 PF12862 Apc5: Anaphase-promot 73.6 15 0.00034 24.3 5.6 53 220-272 8-69 (94)
387 COG4941 Predicted RNA polymera 73.5 49 0.0011 28.0 9.2 119 122-244 271-399 (415)
388 PRK13342 recombination factor 73.5 65 0.0014 28.4 15.1 24 156-180 244-267 (413)
389 PF09670 Cas_Cas02710: CRISPR- 73.3 62 0.0013 28.2 12.3 55 15-70 140-198 (379)
390 KOG0545 Aryl-hydrocarbon recep 73.1 40 0.00086 27.2 8.3 88 186-273 186-293 (329)
391 KOG1308 Hsp70-interacting prot 73.1 2.5 5.5E-05 35.2 2.0 116 153-271 125-242 (377)
392 PF06552 TOM20_plant: Plant sp 72.6 6.2 0.00013 29.9 3.7 45 226-270 51-99 (186)
393 PF09986 DUF2225: Uncharacteri 72.2 45 0.00098 26.3 8.7 29 245-273 166-194 (214)
394 KOG0376 Serine-threonine phosp 72.0 10 0.00022 33.4 5.3 94 150-246 12-108 (476)
395 PF11848 DUF3368: Domain of un 71.5 16 0.00035 20.7 5.0 31 18-48 14-44 (48)
396 KOG0890 Protein kinase of the 71.4 1.6E+02 0.0035 32.2 14.1 149 46-202 1388-1542(2382)
397 PF11846 DUF3366: Domain of un 71.3 23 0.00051 27.2 7.0 37 205-241 139-175 (193)
398 PF11846 DUF3366: Domain of un 70.8 21 0.00047 27.4 6.7 31 174-204 140-170 (193)
399 COG2909 MalT ATP-dependent tra 70.5 1.1E+02 0.0023 29.7 19.6 219 16-235 425-684 (894)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 70.4 36 0.00077 24.2 8.5 43 59-101 81-124 (126)
401 PF10366 Vps39_1: Vacuolar sor 70.4 12 0.00026 25.7 4.6 30 244-273 39-68 (108)
402 PF10255 Paf67: RNA polymerase 69.4 30 0.00066 30.2 7.7 56 79-134 125-191 (404)
403 PF11663 Toxin_YhaV: Toxin wit 69.3 5.6 0.00012 28.4 2.7 33 118-152 106-138 (140)
404 PRK10564 maltose regulon perip 69.2 6.4 0.00014 32.4 3.5 35 241-275 254-288 (303)
405 cd00280 TRFH Telomeric Repeat 68.8 34 0.00074 26.1 6.8 25 187-211 120-144 (200)
406 KOG4507 Uncharacterized conser 68.4 39 0.00084 31.0 8.1 125 24-150 591-718 (886)
407 PF14863 Alkyl_sulf_dimr: Alky 67.5 36 0.00078 24.8 6.7 62 195-259 58-119 (141)
408 KOG2396 HAT (Half-A-TPR) repea 66.9 98 0.0021 27.9 16.3 228 4-242 313-563 (568)
409 COG0735 Fur Fe2+/Zn2+ uptake r 65.8 50 0.0011 24.1 7.7 64 27-91 7-70 (145)
410 KOG3364 Membrane protein invol 65.3 49 0.0011 23.9 6.7 72 175-246 29-107 (149)
411 PF10345 Cohesin_load: Cohesin 65.1 1.2E+02 0.0027 28.4 17.2 189 40-238 29-253 (608)
412 cd08819 CARD_MDA5_2 Caspase ac 64.9 37 0.0008 22.3 6.9 67 25-97 21-87 (88)
413 PF11838 ERAP1_C: ERAP1-like C 64.1 87 0.0019 26.3 21.3 111 158-269 146-262 (324)
414 PF10255 Paf67: RNA polymerase 63.5 63 0.0014 28.3 8.5 98 141-238 74-192 (404)
415 COG4003 Uncharacterized protei 63.5 23 0.0005 22.7 4.3 26 46-71 36-61 (98)
416 KOG4814 Uncharacterized conser 63.0 49 0.0011 30.7 7.8 86 188-273 364-457 (872)
417 KOG4642 Chaperone-dependent E3 62.9 80 0.0017 25.5 10.1 114 117-235 20-142 (284)
418 KOG4567 GTPase-activating prot 62.7 92 0.002 26.1 10.0 42 62-103 264-305 (370)
419 COG4976 Predicted methyltransf 62.7 17 0.00037 28.8 4.5 56 220-275 5-60 (287)
420 PHA02875 ankyrin repeat protei 62.6 1.1E+02 0.0023 26.9 11.8 198 26-234 15-223 (413)
421 PF11817 Foie-gras_1: Foie gra 62.5 46 0.001 26.9 7.3 56 215-270 183-244 (247)
422 PF04097 Nic96: Nup93/Nic96; 61.6 1.4E+02 0.0031 28.0 18.1 189 11-205 116-354 (613)
423 PF11663 Toxin_YhaV: Toxin wit 61.0 14 0.00029 26.5 3.4 21 55-75 109-129 (140)
424 PF14689 SPOB_a: Sensor_kinase 60.1 23 0.00049 21.4 3.9 23 46-68 28-50 (62)
425 KOG3824 Huntingtin interacting 60.0 19 0.0004 29.9 4.4 58 189-246 127-186 (472)
426 PF11848 DUF3368: Domain of un 59.9 30 0.00065 19.6 5.1 33 118-150 13-45 (48)
427 PF06135 DUF965: Bacterial pro 59.6 15 0.00032 23.3 3.0 22 304-325 14-35 (79)
428 PRK10941 hypothetical protein; 58.7 1E+02 0.0022 25.4 9.8 72 146-220 185-261 (269)
429 PF11768 DUF3312: Protein of u 57.7 1.5E+02 0.0033 27.1 11.3 24 80-103 412-435 (545)
430 KOG2659 LisH motif-containing 57.6 95 0.0021 24.7 8.8 94 38-133 23-129 (228)
431 COG0735 Fur Fe2+/Zn2+ uptake r 57.6 73 0.0016 23.3 6.9 24 114-137 27-50 (145)
432 PF11817 Foie-gras_1: Foie gra 57.4 82 0.0018 25.5 7.9 55 147-201 183-241 (247)
433 cd08326 CARD_CASP9 Caspase act 57.1 52 0.0011 21.4 6.0 39 88-126 42-80 (84)
434 PF10475 DUF2450: Protein of u 57.0 1.1E+02 0.0025 25.4 9.6 22 148-169 133-154 (291)
435 KOG2471 TPR repeat-containing 56.7 1.4E+02 0.0031 26.9 9.3 103 84-189 248-380 (696)
436 COG5191 Uncharacterized conser 56.7 49 0.0011 27.7 6.2 61 209-269 106-167 (435)
437 PF14689 SPOB_a: Sensor_kinase 56.1 22 0.00047 21.5 3.4 24 11-34 28-51 (62)
438 PF12968 DUF3856: Domain of Un 55.9 70 0.0015 22.6 6.9 18 252-269 108-125 (144)
439 PF04190 DUF410: Protein of un 55.7 1.1E+02 0.0025 24.9 15.6 81 177-273 89-170 (260)
440 smart00777 Mad3_BUB1_I Mad3/BU 55.7 63 0.0014 22.9 6.0 40 229-268 82-123 (125)
441 PF09868 DUF2095: Uncharacteri 55.6 53 0.0012 22.7 5.3 38 47-85 67-104 (128)
442 PF12862 Apc5: Anaphase-promot 54.9 60 0.0013 21.5 6.8 21 149-169 48-68 (94)
443 PF13934 ELYS: Nuclear pore co 54.0 1.1E+02 0.0024 24.4 18.5 54 113-169 114-167 (226)
444 KOG3807 Predicted membrane pro 53.6 1.4E+02 0.003 25.4 14.0 53 149-201 282-334 (556)
445 KOG3807 Predicted membrane pro 53.3 1.4E+02 0.0031 25.4 8.6 55 113-169 281-338 (556)
446 cd07153 Fur_like Ferric uptake 53.3 45 0.00097 23.0 5.1 45 12-56 6-50 (116)
447 COG5108 RPO41 Mitochondrial DN 52.5 1.4E+02 0.003 28.2 8.8 46 112-157 33-80 (1117)
448 KOG4567 GTPase-activating prot 52.3 1.4E+02 0.0031 25.1 10.2 42 128-169 264-305 (370)
449 PRK12798 chemotaxis protein; R 52.2 1.7E+02 0.0036 25.8 21.4 183 89-274 125-325 (421)
450 KOG0551 Hsp90 co-chaperone CNS 51.8 53 0.0011 27.8 5.8 49 221-269 130-178 (390)
451 PF09454 Vps23_core: Vps23 cor 51.6 52 0.0011 20.2 4.5 48 106-154 7-54 (65)
452 PF10475 DUF2450: Protein of u 51.1 1.4E+02 0.003 24.9 8.4 111 47-166 104-221 (291)
453 cd00280 TRFH Telomeric Repeat 50.9 72 0.0016 24.5 5.9 34 217-251 118-151 (200)
454 COG2178 Predicted RNA-binding 50.8 1.2E+02 0.0025 23.6 7.3 57 80-136 33-98 (204)
455 KOG1839 Uncharacterized protei 50.3 2.1E+02 0.0046 29.2 10.3 156 115-270 940-1125(1236)
456 KOG2062 26S proteasome regulat 50.0 2.4E+02 0.0052 27.0 12.7 119 116-238 510-634 (929)
457 PRK11639 zinc uptake transcrip 49.7 87 0.0019 23.6 6.4 58 135-194 19-76 (169)
458 COG2912 Uncharacterized conser 49.5 84 0.0018 25.8 6.5 56 218-273 189-244 (269)
459 PF12926 MOZART2: Mitotic-spin 48.4 76 0.0016 20.8 7.9 43 27-69 29-71 (88)
460 PRK05473 hypothetical protein; 48.2 28 0.0006 22.6 2.9 20 306-325 19-38 (86)
461 PF04190 DUF410: Protein of un 48.0 1.5E+02 0.0033 24.2 15.5 91 15-105 19-119 (260)
462 PF11838 ERAP1_C: ERAP1-like C 48.0 1.7E+02 0.0036 24.6 13.8 106 92-203 146-262 (324)
463 PF14669 Asp_Glu_race_2: Putat 47.5 1.3E+02 0.0029 23.3 13.3 56 148-204 138-207 (233)
464 PF14561 TPR_20: Tetratricopep 47.2 81 0.0018 20.8 7.8 53 209-261 21-75 (90)
465 PF02847 MA3: MA3 domain; Int 47.1 48 0.001 22.7 4.5 24 10-33 6-29 (113)
466 KOG4521 Nuclear pore complex, 46.5 3.4E+02 0.0073 27.7 14.4 148 15-163 929-1123(1480)
467 KOG0687 26S proteasome regulat 46.4 1.8E+02 0.004 24.7 13.1 95 142-238 104-209 (393)
468 PF04910 Tcf25: Transcriptiona 45.9 2E+02 0.0043 24.9 16.6 57 113-169 109-166 (360)
469 KOG1839 Uncharacterized protei 45.8 3.5E+02 0.0077 27.8 12.1 96 74-169 971-1084(1236)
470 PF01475 FUR: Ferric uptake re 45.8 40 0.00087 23.5 3.9 45 47-91 13-57 (120)
471 PF09454 Vps23_core: Vps23 cor 45.3 43 0.00093 20.6 3.4 49 39-88 6-54 (65)
472 KOG0530 Protein farnesyltransf 44.6 1.8E+02 0.0039 24.0 14.9 128 194-324 94-238 (318)
473 KOG2297 Predicted translation 44.6 83 0.0018 26.3 5.8 45 109-162 296-341 (412)
474 KOG2066 Vacuolar assembly/sort 44.1 3E+02 0.0066 26.5 14.6 101 13-119 363-467 (846)
475 PRK09462 fur ferric uptake reg 43.9 1.3E+02 0.0027 22.0 7.8 62 30-92 6-68 (148)
476 TIGR02270 conserved hypothetic 43.8 2.3E+02 0.005 25.1 24.9 234 13-270 45-278 (410)
477 smart00777 Mad3_BUB1_I Mad3/BU 43.7 1.2E+02 0.0025 21.6 9.0 41 60-100 82-123 (125)
478 cd07153 Fur_like Ferric uptake 43.5 64 0.0014 22.2 4.7 47 112-158 5-51 (116)
479 PF06957 COPI_C: Coatomer (COP 43.2 1.6E+02 0.0035 26.1 7.7 42 202-243 290-333 (422)
480 PF07575 Nucleopor_Nup85: Nup8 43.0 63 0.0014 30.0 5.7 25 78-102 407-431 (566)
481 KOG2297 Predicted translation 42.8 2.1E+02 0.0045 24.2 9.9 59 34-99 159-219 (412)
482 KOG2659 LisH motif-containing 42.6 1.7E+02 0.0038 23.3 11.7 92 109-203 28-128 (228)
483 COG4472 Uncharacterized protei 42.4 39 0.00084 21.5 2.9 24 302-325 15-38 (88)
484 PF08424 NRDE-2: NRDE-2, neces 42.0 2.2E+02 0.0047 24.2 16.1 62 124-188 48-109 (321)
485 PRK11619 lytic murein transgly 41.9 3.1E+02 0.0068 26.0 21.0 223 55-278 255-510 (644)
486 PF07064 RIC1: RIC1; InterPro 41.6 2E+02 0.0042 23.6 14.2 88 181-274 156-250 (258)
487 COG5108 RPO41 Mitochondrial DN 41.5 1.8E+02 0.0039 27.5 7.9 48 11-58 33-82 (1117)
488 KOG0376 Serine-threonine phosp 41.4 65 0.0014 28.7 5.1 88 13-103 11-99 (476)
489 PF15297 CKAP2_C: Cytoskeleton 40.5 1.7E+02 0.0038 25.0 7.2 66 212-277 105-173 (353)
490 PF12968 DUF3856: Domain of Un 40.4 1.3E+02 0.0029 21.3 9.4 61 178-238 55-128 (144)
491 COG5191 Uncharacterized conser 40.3 68 0.0015 26.9 4.7 77 174-250 103-182 (435)
492 KOG1114 Tripeptidyl peptidase 39.4 4E+02 0.0087 26.6 12.7 61 177-238 1230-1294(1304)
493 PF03745 DUF309: Domain of unk 39.4 88 0.0019 18.9 6.0 14 120-133 12-25 (62)
494 PF10345 Cohesin_load: Cohesin 39.1 3.4E+02 0.0073 25.6 22.9 184 87-271 372-604 (608)
495 PRK13800 putative oxidoreducta 39.0 4.1E+02 0.0089 26.5 24.4 91 177-270 788-878 (897)
496 smart00638 LPD_N Lipoprotein N 39.0 3.2E+02 0.007 25.4 19.6 58 77-136 311-369 (574)
497 PF12926 MOZART2: Mitotic-spin 38.8 1.1E+02 0.0024 20.0 7.1 62 40-103 9-70 (88)
498 PF12583 TPPII_N: Tripeptidyl 38.5 1.5E+02 0.0032 21.3 5.6 38 220-257 86-123 (139)
499 PRK09857 putative transposase; 38.4 2.3E+02 0.005 23.7 7.8 66 213-278 209-274 (292)
500 PF13934 ELYS: Nuclear pore co 37.9 2.1E+02 0.0045 22.8 17.2 53 148-204 114-166 (226)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-57 Score=418.74 Aligned_cols=330 Identities=37% Similarity=0.695 Sum_probs=323.6
Q ss_pred CCCCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++
T Consensus 285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
+|+++|++.|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.++++++++.|+..+|++|+.+|...|+++.|..+++++.+..
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 99999999977899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
|++...|..|+.+|.+.|++++|.+++++|.+.|+.+. |+++|++....++.|..++..||...+++..|..+...|++
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~-~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH-PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC-CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cCccCcccccC
Q 043124 321 ASYVPELEAML 331 (331)
Q Consensus 321 ~g~~p~~~~~l 331 (331)
.||.||+..++
T Consensus 604 ~gy~~~~~~~~ 614 (697)
T PLN03081 604 YGYVAEENELL 614 (697)
T ss_pred cCCCCCcchhh
Confidence 99999987653
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-53 Score=399.49 Aligned_cols=328 Identities=39% Similarity=0.756 Sum_probs=319.4
Q ss_pred CCCCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
|+.||+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 5678999999999999999999999999999986 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
+|+++|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
|.++|+.|.+.+++.|+..+|+.++.+|++.|++++|.+++++|+++||..+|++|+.+|...++.+.++...+++.++.
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 99999999978899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
|++...|..|...|...|+|++|.++.+.|++.|+.++ |+++||+.+.+++.|..++..||...+++..|..+...|++
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~-~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD-PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC-CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cCccCcccccC
Q 043124 321 ASYVPELEAML 331 (331)
Q Consensus 321 ~g~~p~~~~~l 331 (331)
.||.||+..++
T Consensus 767 ~g~~~~~~~~~ 777 (857)
T PLN03077 767 SGLAGSESSSM 777 (857)
T ss_pred CCcCCCcchhc
Confidence 99999987653
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-47 Score=356.64 Aligned_cols=273 Identities=22% Similarity=0.281 Sum_probs=173.1
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHH--hCCCCchhHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ--IGFDIDVYIGSA 81 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 81 (331)
||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|++
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555544 345555555555
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLRE----KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 157 (331)
++.+|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 55555555555556555555543 24456666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS---KFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
+++|.++|+.|. +.|+.|+..+|+.||.+|++.|++++|.++|++| ++.||..+|+.+|.+|++.|++++|.++|+
T Consensus 665 ~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 665 LDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666 4566666666666666666667777776666654 356677777777777777777777777777
Q ss_pred HHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 235 ELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 235 ~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+|.. ..|+ ..+|..++.+|.+.|++++|.+++++|.+.|+.|+
T Consensus 744 eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 744 EMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 7665 3354 55556677777777777777777777777777666
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-47 Score=353.84 Aligned_cols=273 Identities=18% Similarity=0.326 Sum_probs=143.9
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI 549 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhCCHHHHHHHHhhcC------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 043124 84 DMYAKCGSLDRSLLVFFKLR------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 157 (331)
.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|+
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 55555555555555555542 234455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS---KFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
+++|..+|++|. ..|+.||..+|+.++.+|++.|++++|.+++++| ++.||..+|+.||.+|++.|++++|.++|+
T Consensus 630 ~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 630 WDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555555555 3455555555555555555555555555555443 344555555555555555555555555555
Q ss_pred HHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 235 ELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 235 ~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+|.+ ..|+ ...|+.|+.+|++.|++++|.++|++|.+.|+.|+
T Consensus 709 eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 709 DIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 5544 2333 44455555555555555555555555555555555
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=337.20 Aligned_cols=275 Identities=28% Similarity=0.454 Sum_probs=262.7
Q ss_pred CCCCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+++
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
+|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh--
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 238 (331)
|.+++..|. +.|+.|+..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+
T Consensus 344 a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 344 AKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999 77999999999999999999999999999999996 68999999999999999999999999999987
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh-cCCCCC
Q 043124 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE-LGIEKR 278 (331)
Q Consensus 239 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~ 278 (331)
..|+ ..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+
T Consensus 422 ~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 422 VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 5577 66679999999999999999999999975 588887
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-45 Score=343.53 Aligned_cols=276 Identities=30% Similarity=0.529 Sum_probs=260.6
Q ss_pred CCCCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 1 MPARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
+|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-c
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-L 239 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 239 (331)
|.++++.+. +.|+.|+..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.+|.+|.+.|+.++|..+|++|.. .
T Consensus 408 a~~l~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 408 GVKLHELAE-RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHH-HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 999999999 78999999999999999999999999999999987 67888888888888888888888888888865 2
Q ss_pred CCC----------------------------------------------------------------CcchHHHHHHHHH
Q 043124 240 EPN----------------------------------------------------------------NSGYCTLLLNMYA 255 (331)
Q Consensus 240 ~p~----------------------------------------------------------------~~~~~~~l~~~~~ 255 (331)
.|+ +...|+.++.+|.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYV 565 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 333 2445788899999
Q ss_pred hcCCchHHHHHHHHHHhcCCCCC
Q 043124 256 EVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+.|+.++|.++|++|.+.|+.|+
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1e-22 Score=176.15 Aligned_cols=287 Identities=13% Similarity=0.090 Sum_probs=229.7
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPD---QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
.+..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+|+++.+.. +.+..++.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 4566888899999999999999999999887542222 2467788889999999999999999998763 45678889
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCC--------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREKN--------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
.++.++.+.|++++|.+.++.+.+.+ ...+..++..+.+.|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 99999999999999999999886432 1245667778889999999999999998764 44566777888999
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 231 (331)
.+.|++++|..+|+++.+. +......+++.++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..
T Consensus 225 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999832 21222456788899999999999999999874 356777777888888999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEee
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYAE---VSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFA 295 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (331)
+++++++..|++.. +..++..+.. .|+.+++..++++|.+.++.++ |.+...+.+.....+.
T Consensus 304 ~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-p~~~c~~cg~~~~~~~ 368 (389)
T PRK11788 304 LLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK-PRYRCRNCGFTARTLY 368 (389)
T ss_pred HHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC-CCEECCCCCCCCccce
Confidence 99999999998664 4556655553 5689999999999999999999 8877666665554443
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.2e-20 Score=163.26 Aligned_cols=258 Identities=14% Similarity=0.060 Sum_probs=215.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 043124 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID---VYIGSALVDMYAK 88 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 88 (331)
....+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999874 34667889999999999999999999999987542221 2567888999999
Q ss_pred hCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCcHHHH
Q 043124 89 CGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN----GVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a 161 (331)
.|++++|+.+|+++.+ .+..+++.++..+.+.|++++|.+.++++.+.+..+. ...+..+...+...|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999976 3567899999999999999999999999988753332 22455677788899999999
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-FQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
...|+++.+.. +.+...+..+...+.+.|++++|.+.++++. ..|+ ..++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998322 3346677888899999999999999999854 3454 45678888999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 239 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..|+.. .+..++..+.+.|++++|..+++++.+.
T Consensus 278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999864 4588999999999999999999998865
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=4.1e-20 Score=176.37 Aligned_cols=265 Identities=14% Similarity=0.056 Sum_probs=190.1
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+..++..+...+.+.|++++|...|+++.+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+..+|..+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 44556666666666666666666666665543 3344555566666666677777777776666543 445666777777
Q ss_pred HHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
++...|++++|...|+++.+ .+...+..++.++...|++++|...|+++.+.. +.+..++..++..+...|++++|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776643 245567777777777777777777777777653 44566777777777777777788
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
..+++.+.... +.+...+..+...+...|++++|.+.++++ ...|+..++..+..++...|++++|.+.++++++..
T Consensus 689 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 689 KKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777777332 445667777778888888888888888764 355666777778888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
|++...+..++..|...|++++|...|+++.+..
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 8888888888888888899999999998888654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=7.9e-20 Score=174.38 Aligned_cols=307 Identities=13% Similarity=0.083 Sum_probs=218.7
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
.+...+..++..+...|++++|..+++++.+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 456677788888888888888888888887753 4567788888888888888888888888887764 44666777888
Q ss_pred HHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
.++.+.|++++|..+|+++.+. +..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888877542 45678888888888888888888888887764 5566677777778888888888
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-K-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
|...|+.+... .|+..++..+..++.+.|++++|.+.+++. . ...+...+..+...|...|++++|...|+++.+
T Consensus 722 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888887732 344466667777888888888888777763 2 233566777777777788888888888888888
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccc----eE--EeCCE---EEEeecCCCCCCCchHHHH
Q 043124 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS----WI--EMERK---VYQFAASDKSHPASDEIYS 309 (331)
Q Consensus 239 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~--~~~~~---~~~~~~~~~~~p~~~~~~~ 309 (331)
..|+++..+..++..+...|+ ++|+.++++..+.. |+.+... .+ ..+.. ...+...-...|.++.++.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 778777777778888888887 77888887776542 2211110 00 00000 0000000155677888888
Q ss_pred HHHHHHHHHH
Q 043124 310 SLSKLDEQLK 319 (331)
Q Consensus 310 ~l~~l~~~~~ 319 (331)
.+..++...+
T Consensus 876 ~l~~~~~~~g 885 (899)
T TIGR02917 876 HLALALLATG 885 (899)
T ss_pred HHHHHHHHcC
Confidence 8888766543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=9.8e-18 Score=152.65 Aligned_cols=264 Identities=8% Similarity=-0.088 Sum_probs=204.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
...+..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~ 153 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT 153 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445556677778899999999999988864 3456677888888888999999999999888874 4467778888888
Q ss_pred HHhhCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 86 YAKCGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
+...|++++|...++.+.. | +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|+
T Consensus 154 l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 154 LVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999988876642 3 33334333 347788999999999988877643344445555667788889999999
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHH----HHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED----ALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
..++.+.... +.+...+..+...+...|++++ |...+++. ...|+ ...+..+...+...|++++|...++++
T Consensus 233 ~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999988332 3456777788888899999885 77888763 35564 667778888888999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 237 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
+...|++...+..+..++.+.|++++|...++++.+.+
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999988888888999999999999999998887653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=6.1e-19 Score=149.31 Aligned_cols=307 Identities=12% Similarity=0.125 Sum_probs=220.9
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc----------
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID---------- 75 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 75 (331)
..+|+.+.+.+-..|+++.|+.+|+.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 4578889999999999999999999998864 3366788888888888888888888887777653 22
Q ss_pred -------------------------hhHHHHHHHHHHhhCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHH
Q 043124 76 -------------------------VYIGSALVDMYAKCGSLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGFAHEAL 127 (331)
Q Consensus 76 -------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~ 127 (331)
..+|+.|...+...|++..|+..|++..+-|+ .+|-.|...|...+.+++|.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 22344444445555555555555555544332 35666677777777777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHh-CC
Q 043124 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRS-SK 205 (331)
Q Consensus 128 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-~~ 205 (331)
..|.+..... +-....+..+...|..+|.+|.|+..|++..+ +.|+ ...|+.|..++-..|+..+|.+.+.+ +.
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 7776666542 23355666666667778899999999998882 3555 67899999999999999999999986 44
Q ss_pred CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccce
Q 043124 206 FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSW 284 (331)
Q Consensus 206 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 284 (331)
..|+ ....+.|..++...|.++.|.++|..++++.|.-...++.|...|..+|++++|+..+++.. .+.|. -+-..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~-fAda~ 425 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPT-FADAL 425 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCch-HHHHH
Confidence 5565 67788899999999999999999999999999988889999999999999999999999887 35565 22222
Q ss_pred EEeCCEEEEe----------ecCCCCCCCchHHHHHHHHHHHHHHhcCccC
Q 043124 285 IEMERKVYQF----------AASDKSHPASDEIYSSLSKLDEQLKLASYVP 325 (331)
Q Consensus 285 ~~~~~~~~~~----------~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~p 325 (331)
...+....+. .-.-..+|...++...|+.+|+ +.|.+|
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k---DsGni~ 473 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK---DSGNIP 473 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh---ccCCcH
Confidence 2222221110 0011678888888888888765 555544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=7.7e-19 Score=148.70 Aligned_cols=264 Identities=14% Similarity=0.186 Sum_probs=222.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
+.|+.|...+-.+|+...|++.|++..+.. +.=...|-.|.+.|...+.+++|...+..+.... +....++..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEE
Confidence 568888888989999999999999888753 2235688889999999999999999988887763 34567888888889
Q ss_pred HhhCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKN---LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 163 (331)
...|.+|-|+..|++..+.+ ..+|+.|..++-..|+..+|.+.|++.+... +.-..+.+.|...+...|.+++|..
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999887543 4689999999999999999999999988863 3346778889999999999999999
Q ss_pred HHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 164 RFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 164 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
+|.... .+.|. ....+.|...|-..|++++|+..+++ +.+.|+ ...++.+...|-..|+.+.|...+.+++..+
T Consensus 376 ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 376 LYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 999887 33555 56778899999999999999999987 567887 6788888888999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
|.-..++..|...|...|+..+|++-+++... ++|+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 99899999999999999999999999998874 4555
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.6e-17 Score=149.01 Aligned_cols=260 Identities=9% Similarity=-0.030 Sum_probs=214.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
.-.++..+.+.|++++|+.+++........ +...+..++.+....|+++.|...++++.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 345677888999999999999999987533 45566667777888999999999999999985 4567788899999999
Q ss_pred hCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 89 CGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
.|++++|...|++..+ | +...+..++..+...|++++|...++.+..... .+...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999998865 3 566889999999999999999999998877642 333344333 3478899999999999
Q ss_pred HhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHH----HHHHHHHHHhc
Q 043124 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEI----AHIAVNELMIL 239 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 239 (331)
+.+.+. ...++...+..+..++...|++++|+..+++. ...| +...+..+...+...|++++ |...++++++.
T Consensus 201 ~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998833 22233445555677889999999999999874 3445 46677788888999999985 89999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 240 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.|++...+..++.++.+.|++++|...+++..+.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999864
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.6e-17 Score=149.14 Aligned_cols=305 Identities=14% Similarity=0.059 Sum_probs=206.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
+......+.+.|++++|+..|++..+. .|+...|..+..+|...|++++|+..++.+++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334555566666666666666666553 4555566666666666666666666666666553 2244455555555555
Q ss_pred hCCHHHHH------------------------------------------------------------------------
Q 043124 89 CGSLDRSL------------------------------------------------------------------------ 96 (331)
Q Consensus 89 ~g~~~~a~------------------------------------------------------------------------ 96 (331)
.|++++|+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 55555554
Q ss_pred ----------------------------HHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Q 043124 97 ----------------------------LVFFKLREK------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142 (331)
Q Consensus 97 ----------------------------~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 142 (331)
+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 333333211 22346666777778888999999988888763 3345
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHH
Q 043124 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGC 220 (331)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~ 220 (331)
..|..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|+..|++. ...|+ ...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 677778888888999999999999887332 334778888888999999999999999873 45564 66677777788
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccc----eEEe-------CC
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSS----WIEM-------ER 289 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~~-------~~ 289 (331)
.+.|++++|...+++++...|+++..+..++.++...|++++|...|++..+...... +... ++.. ..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999886543211 1000 0000 00
Q ss_pred EE----EEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 290 KV----YQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 290 ~~----~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
.. ..+......+|++..++..+++++...++
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 00 00000015678888888888888876554
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.3e-16 Score=145.57 Aligned_cols=251 Identities=12% Similarity=0.081 Sum_probs=207.2
Q ss_pred CCChhHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 043124 19 NKQFREALDAFNEMKNSG-ISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 96 (331)
.+++++|...|++..+.+ ..| ....+..+...+...|++++|+..+++.++.. +.....|..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 367899999999998764 223 45578888888899999999999999998874 334668888999999999999999
Q ss_pred HHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC
Q 043124 97 LVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173 (331)
Q Consensus 97 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (331)
..|++..+ .+..+|..+...+...|++++|...|++.++.+ +.+...+..+...+.+.|++++|+..|++..+..
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99997764 356789999999999999999999999999874 4467777788889999999999999999988332
Q ss_pred CCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcH-H-------HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNA-V-------IWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
+.+...++.+..++...|++++|++.|++ +...|+. . .++..+..+...|++++|.+++++++..+|++.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 44577889999999999999999999987 3344431 1 112222223446999999999999999999988
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..+..++.++.+.|++++|...|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88999999999999999999999998765
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=2.4e-18 Score=141.71 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=111.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (331)
.+...+.+.|++++|++++++......+| |..-|..+...+...++++.|++.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997655443233 4455556666777899999999999999887633 56677777777 789
Q ss_pred CCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 043124 90 GSLDRSLLVFFKLRE--KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFL 166 (331)
Q Consensus 90 g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 166 (331)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999887643 466678888899999999999999999987643 35677788888899999999999999999
Q ss_pred hhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 167 SMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 167 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
+..+. .| +......++..+...|+.+++.++++... ...|...+..+..++...|+.++|..++++..+..|++
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99943 44 57788899999999999999887776532 23455667888999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+.....++.++...|+.++|.++.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887653
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=3.7e-15 Score=144.65 Aligned_cols=263 Identities=14% Similarity=0.062 Sum_probs=182.4
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhH------------HHHHHHHHccCCchHHHHHHHHHHHhC
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPD-QVTM------------ATVLSACAHLGALDLGREIHLYVMQIG 71 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 71 (331)
|...+..|...+.+.|++++|+..|++..+...... ...+ ......+...|++++|+..++++++..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 566777788888888888888888888776532211 1111 122335567788888888888877764
Q ss_pred CCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHH-------------------------------------
Q 043124 72 FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWN------------------------------------- 111 (331)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------------------------------------- 111 (331)
+.+...+..+..++...|++++|++.|++..+. +...+.
T Consensus 382 -P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 382 -NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 345666777788888888888888888776532 122222
Q ss_pred -----HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHH--
Q 043124 112 -----SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM-- 184 (331)
Q Consensus 112 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 184 (331)
.+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al 537 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGL 537 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 23334556788888888888888764 3355666778888888999999999988887332 1122222222
Q ss_pred ------------------------------------------HHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhh
Q 043124 185 ------------------------------------------VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL 222 (331)
Q Consensus 185 ------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~ 222 (331)
...+...|+.++|..+++.. .++...+..+...+..
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQ 615 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHH
Confidence 22344455555555555532 2334456667777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.|++++|...++++++..|++...+..++.+|...|++++|.+.++...+.
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999987653
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.7e-16 Score=134.50 Aligned_cols=268 Identities=15% Similarity=0.114 Sum_probs=214.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhhCCHHHHHH
Q 043124 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF--DIDVYIGSALVDMYAKCGSLDRSLL 97 (331)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 97 (331)
-+..+|+.+|.+.... +..+.+....+..+|...+++++|+.+|+.+.+... -.+..+|.+.+-.+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568899999995554 455667888999999999999999999999987631 2367788887766543222211111
Q ss_pred HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc
Q 043124 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177 (331)
Q Consensus 98 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (331)
-+-.+....+.+|.++.++|.-+++++.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+... ..+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 1222223467899999999999999999999999999864 3378999999889999999999999999988 334
Q ss_pred HhHHH---HHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 178 VEHYG---CMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 178 ~~~~~---~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
+.+|+ .|...|.+.++++.|.-.|++. .+.|. ......+...+-+.|+.++|+++++++..++|.++..-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 44554 5566799999999999999874 57774 5666667777899999999999999999999999988888999
Q ss_pred HHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhc
Q 043124 253 MYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321 (331)
Q Consensus 253 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 321 (331)
.+...+++++|+..++++++ ..|+...++..++++|..++..
T Consensus 566 il~~~~~~~eal~~LEeLk~---------------------------~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE---------------------------LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH---------------------------hCcchHHHHHHHHHHHHHHccc
Confidence 99999999999999999973 4578888999999999988763
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=2.3e-14 Score=139.19 Aligned_cols=252 Identities=9% Similarity=0.031 Sum_probs=164.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHH--------------
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG-------------- 79 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 79 (331)
..+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++++... .+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHH
Confidence 34455555555555555555542 22344444555555555555555555555554421 111111
Q ss_pred ----------------------------HHHHHHHHhhCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHH
Q 043124 80 ----------------------------SALVDMYAKCGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALA 128 (331)
Q Consensus 80 ----------------------------~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 128 (331)
..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|..
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223344456777777777776653 2 34556667777777777777777
Q ss_pred HHHHHHHcCCCCcHHHHHHH--------------------------------------------HHHHhccCcHHHHHHH
Q 043124 129 MFDRMIYENVEPNGVTFISV--------------------------------------------LSACTHAGLVEEGRRR 164 (331)
Q Consensus 129 ~~~~m~~~~~~p~~~~~~~l--------------------------------------------l~~~~~~~~~~~a~~~ 164 (331)
.++++.+.. +.+...+..+ ...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 777766542 2222222222 2333444555555555
Q ss_pred HHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
++. .+.+...+..+...+.+.|++++|++.+++. ...| +...+..++..+...|++++|.+.++.+.+..|+
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 441 1345556777888999999999999999874 3455 4778888999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
+...+..+..++...|++++|.++++++....
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888889999999999999999999987643
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=1.2e-14 Score=136.00 Aligned_cols=261 Identities=11% Similarity=0.020 Sum_probs=208.6
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56778888877776 7888999988888776 466555445555567899999999999987654 444555667788
Q ss_pred HHHhhCCHHHHHHHHhhcCCCChhhHHHH---HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSI---IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
++.+.|+.++|...+++..+.++...+.. ...+.+.|++++|...+++..+. .|+...+..+...+.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999988876544333333 33444559999999999999886 45788888899999999999999
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 239 (331)
+..|++..... +.+...++.+..++...|++++|++.+++. ...| +...+..+..++...|++++|...++++++.
T Consensus 629 ~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999988332 334677888888999999999999999873 4556 4677888888899999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 240 EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 240 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.|++..+.........+..+++.|.+-+++--..+
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99998888888899999999999998888765443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=9.9e-14 Score=129.20 Aligned_cols=263 Identities=12% Similarity=-0.003 Sum_probs=148.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..+
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445555556666666666666666665542 22334 5555556666666666666666666653 2234444445555
Q ss_pred HHhhCCHHHHHHHHhhcCC-------------------------------------------------CChhh---H---
Q 043124 86 YAKCGSLDRSLLVFFKLRE-------------------------------------------------KNLFC---W--- 110 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~-------------------------------------------------~~~~~---~--- 110 (331)
+...|..++|++.++.... .++.. +
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 5444554444433332111 00000 0
Q ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC--cHhHHHHHHH
Q 043124 111 -NSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP--EVEHYGCMVD 186 (331)
Q Consensus 111 -~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 186 (331)
...+..+...|++++|+..|+++.+.+.+ |+. ....+..++...|++++|+..|+++.......+ .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 00012334556777777777777665421 222 112245567777777777777777662211110 1234455566
Q ss_pred HHHHcCCHHHHHHHHHhCC-CCC-------------c---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 043124 187 LLSKAGLLEDALELIRSSK-FQP-------------N---AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTL 249 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~~-~~p-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 249 (331)
++...|++++|...++++. ..| + ...+..+...+...|+.++|++.++++....|++...+..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6777777777777776542 112 2 1233445555777777888888877777777777777777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 043124 250 LLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 250 l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
++.++...|++++|++.+++..+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 77777777888888877777764
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=7.6e-14 Score=130.82 Aligned_cols=228 Identities=10% Similarity=-0.001 Sum_probs=187.6
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC--CChhhHHHHHHHH
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGL 117 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~ 117 (331)
+...|..+..++.. ++..+|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56778888877776 89999999888887763 5554444556666789999999999998764 3445677788889
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
.+.|+.++|...+++..+.+ +++...+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|++++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998875 33444444444455567999999999999983 356788899999999999999999
Q ss_pred HHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 198 LELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 198 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
+..+++. ...|+ ...++.+..++...|+.++|...++++++..|+++.++..+..++...|++++|...+++..+..
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999974 45665 66777777789999999999999999999999999999999999999999999999999998543
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.5e-16 Score=130.98 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=115.3
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHG 121 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~ 121 (331)
.+...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55778889999999999996655443 2446667777788888899999999999999865 34567777777 7899
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHH
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 201 (331)
++++|.+++++..+. .++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356677778888899999999999999998755555678888999999999999999999999
Q ss_pred HhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCC
Q 043124 202 RSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRC 279 (331)
Q Consensus 202 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 279 (331)
++. ...|+ ......++..+...|+.+++.++++...+..|+++..+..+..+|...|+.++|+..+++...
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~------- 242 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK------- 242 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc-------
Confidence 974 45675 777888999999999999999999999888788899999999999999999999999999873
Q ss_pred CccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcC
Q 043124 280 PGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLAS 322 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g 322 (331)
.+|+++.+...++.++...|..+
T Consensus 243 --------------------~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 243 --------------------LNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp --------------------HSTT-HHHHHHHHHHHT------
T ss_pred --------------------ccccccccccccccccccccccc
Confidence 45888889989888877666544
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=2.5e-13 Score=117.06 Aligned_cols=247 Identities=12% Similarity=0.021 Sum_probs=172.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCchHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhhCCHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMA-TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG--SALVDMYAKCGSLDRS 95 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a 95 (331)
.|++++|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+. .|+.... ......+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 589999988777765542 2233333 3344557889999999999988775 3444322 2346788889999999
Q ss_pred HHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCcHHHHHHHH
Q 043124 96 LLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG-------VTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
...++++.+. ++.....+...|.+.|+|++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999887653 5667888889999999999999999999887644322 12333343334445566667777
Q ss_pred HhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
+.+.+.. +.++.....+...+...|+.++|.+.+++. ...|+.... ++.+....++.+++.+.+++..+.+|+++
T Consensus 253 ~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 253 KNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred HhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 7765322 446667777888888888888888888753 334454322 23333455888888888888888888888
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..+..+...+.+.|+|++|.+.|+...+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888888888887743
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=5.2e-13 Score=124.42 Aligned_cols=265 Identities=11% Similarity=0.031 Sum_probs=161.7
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
.+...+..+...+...|++++|..+|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 344457888888888899999999998888763 3456667777788888899999999988888773 44555 77888
Q ss_pred HHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHH-----------------------------
Q 043124 84 DMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFD----------------------------- 131 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~----------------------------- 131 (331)
.++...|+.++|+..++++.+. +...+..+..++...+..++|++.++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 8888889999999888887642 34455556666666666555554444
Q ss_pred -----------------HHHHc-CCCCcHH-HHH----HHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 132 -----------------RMIYE-NVEPNGV-TFI----SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 132 -----------------~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.....|+. ....+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 33221 0111110 110 01223345566777777777766322111221 111235566
Q ss_pred HHcCCHHHHHHHHHhCC-CCCc-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---------------cchH
Q 043124 189 SKAGLLEDALELIRSSK-FQPN-----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN---------------SGYC 247 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---------------~~~~ 247 (331)
...|++++|+..|+++. ..|. ......+..++...|++++|..+++++....|.. ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 67777777777666531 2221 2334445555666777777777777766655421 1233
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 248 TLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 248 ~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
..++..+...|+.++|+.+++++..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666677777777777776654
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=3.1e-13 Score=117.12 Aligned_cols=261 Identities=10% Similarity=-0.032 Sum_probs=187.2
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 9 WTTMITCYS--QNKQFREALDAFNEMKNSGISPDQVT-MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 9 ~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
+..+..+.. ..|+++.|.+.+.+..+. .|++.. +-....+....|+.+.|.+.+.++.+....+...+.......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444443 469999999999888775 455433 345566778889999999999998876422223344556888
Q ss_pred HHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH---hccCcHH
Q 043124 86 YAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC---THAGLVE 159 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~ 159 (331)
+...|+++.|.+.++.+.+. +..++..+...+...|+|++|.+.+..+.+.++.+.......-..++ ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988753 66788899999999999999999999999987543332211111111 2233333
Q ss_pred HHHHHHHhhhhcC--CCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHH-HHHHHH--HhhcCCHHHHHHHH
Q 043124 160 EGRRRFLSMTCGY--SITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIW-GALLGG--CKLHRNLEIAHIAV 233 (331)
Q Consensus 160 ~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~-~~l~~~--~~~~~~~~~a~~~~ 233 (331)
.+...+..+.+.. ..+.+...+..+...+...|+.++|.+.+++. ...||.... ..++.. ....++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3334555544221 11237788888999999999999999999874 445665421 012222 34568889999999
Q ss_pred HHHHhcCCCCc--chHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 234 NELMILEPNNS--GYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 234 ~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
++..+..|+++ .....++..+.+.|++++|.+.|+...
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 99999999999 888899999999999999999999543
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=9.4e-13 Score=113.53 Aligned_cols=250 Identities=9% Similarity=0.039 Sum_probs=196.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMA--TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG 90 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 90 (331)
..+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|...++.+.+.. +-+..+...+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 44557899999999999999875 55654333 33567889999999999999999886 457888999999999999
Q ss_pred CHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 91 SLDRSLLVFFKLREKNL-----------FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 91 ~~~~a~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
++++|.+++..+.+... .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 99999999998875321 13444444444555667777777776543 3557788888999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
+|..++++..+ . +++.... ++.+.+..++.+++++.+++. ...|+ ......+...|.+.+++++|.+.|+.+.
T Consensus 281 ~A~~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999983 2 5554222 344455669999999999864 45565 5567788888999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 238 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+..|++.. +..+..++.+.|+.++|.+++++-..
T Consensus 356 ~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999554 57899999999999999999998764
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=9.8e-14 Score=119.08 Aligned_cols=255 Identities=12% Similarity=0.050 Sum_probs=204.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCchHHHHHH-HHHHHhCCCCchhHHHHHHHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGI--SPDQVTMATVLSACAHLGALDLGREIH-LYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
..+.++|...+++++|..+|+.+.+... .-+.++|++.+-.+-+ +-++..+ +.+.+.. +-.+.+|.++.++|
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcf 431 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALGNCF 431 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchh
Confidence 4567899999999999999999987631 1266788888765532 2223333 3344442 45688999999999
Q ss_pred HhhCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH---HHHHHHhccCcHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKN---LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI---SVLSACTHAGLVEE 160 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~ 160 (331)
.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. |+..|+ .+...|.+.++.+.
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhH
Confidence 99999999999999988654 478999999999999999999999998653 444444 56678899999999
Q ss_pred HHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 161 GRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
|+-.|++.. .+.| +......+...+-+.|+.++|++++++. .+.| |+..-..-+..+...+++++|...++++.
T Consensus 508 Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 508 AEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 999999998 3445 4666677788899999999999999974 3444 45555556667788999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 238 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
++.|++...|..++..|.+.|+.+.|+.-|--+.+...+
T Consensus 585 ~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 585 ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999999988887765443
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=4.4e-13 Score=109.59 Aligned_cols=261 Identities=15% Similarity=0.204 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
.+|.+||.++|+-...+.|.++|++-.....+.+..+||.+|.+-+-.. ..+++.+|.+..+.||..|+|+++.+.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 4455555555555555555555555554444555555555554432111 144555555555555555555555555
Q ss_pred HhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH-HHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE-GRRRF 165 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~ 165 (331)
.+.|+++.|. ..|.+++.+|++.|+.|+..+|..+|..+++.++..+ +..++
T Consensus 284 akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 284 AKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 5555555443 2467788889999999999999989888888877644 44444
Q ss_pred Hhhhh---cCCCC---C-cHhHHHHHHHHHHHcCCHHHHHHHHHh--CC-----CCCc---HHHHHHHHHHHhhcCCHHH
Q 043124 166 LSMTC---GYSIT---P-EVEHYGCMVDLLSKAGLLEDALELIRS--SK-----FQPN---AVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 166 ~~~~~---~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~-----~~p~---~~~~~~l~~~~~~~~~~~~ 228 (331)
..+.. ...++ | +...+..-+..|.+..+.+-|.++-.- -| +.|+ ..-|..+....+.....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 11222 2 345566667777788888877776432 11 2233 2335566666777888888
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCch
Q 043124 229 AHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305 (331)
Q Consensus 229 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 305 (331)
....++.++- ..|.+. +...++++..-.|.++-.-+++..+.+.|-..+ -.++..+...+..++.||..+
T Consensus 417 ~~~~Y~~lVP~~y~p~~~-~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r------~~l~eeil~~L~~~k~hp~tp 488 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQ-TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR------SDLREEILMLLARDKLHPLTP 488 (625)
T ss_pred HHHHHHHhccceecCCch-hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh------HHHHHHHHHHHhcCCCCCCCh
Confidence 8888888876 456644 447788899999999999999999998874433 112222223344457777655
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=1.2e-11 Score=114.05 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=119.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC----CCCcHhHHHHHHHHHHH
Q 043124 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----ITPEVEHYGCMVDLLSK 190 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 190 (331)
-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|+.+|..+....+ .+++......|..+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 34566778888888888888777655556777788888899999999999998863321 22344445778888889
Q ss_pred cCCHHHHHHHHHhCCC----------------CCcH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 191 AGLLEDALELIRSSKF----------------QPNA-VIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 191 ~~~~~~a~~~~~~~~~----------------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
++++++|..+++++.- .||- ..+..++..+.-.|+..+|++.++++....|.+......+..+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999888876421 1222 2334455567888999999999999988899999998889999
Q ss_pred HHhcCCchHHHHHHHHHHh
Q 043124 254 YAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 254 ~~~~g~~~~a~~~~~~m~~ 272 (331)
+...|...+|...++....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 460 YLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHhcCCHHHHHHHHHHHhh
Confidence 9999999999999977653
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.4e-12 Score=106.23 Aligned_cols=255 Identities=13% Similarity=0.075 Sum_probs=193.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhhCC
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF--DIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 91 (331)
.++-...+.+++++-.......|.+.+...-+....+.....|++.|+.+|+++.+... -.|..+|+.++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555566777777777777777655544444444455667888888888888877631 1245666665433222111
Q ss_pred HHH-HHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhh
Q 043124 92 LDR-SLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170 (331)
Q Consensus 92 ~~~-a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (331)
+.- |..+ -.+-+--+.|..++.+.|.-.+++++|...|++.++.+ +-....|+.+..-|....+...|+.-|+...+
T Consensus 315 Ls~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111 2221 12222345677778888888999999999999999986 45677888888999999999999999999993
Q ss_pred cCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 043124 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCT 248 (331)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 248 (331)
-. +.|-..|-.|.++|.-.+...-|+-.|++. .++| |...|.+|..+|.+.++.++|++.|.+++..+-.+...+.
T Consensus 393 i~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 IN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred cC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 22 457889999999999999999999999974 4666 6889999999999999999999999999997766778889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 043124 249 LLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 249 ~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.|+..|.+.++.++|...|++-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=2.1e-12 Score=103.28 Aligned_cols=196 Identities=14% Similarity=0.048 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44556666667777777777777765543 234566667777777777888888777777654 34455666677777
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
...|++++|...+++.............+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888888887732222223456666777788888888888888763 2334 3556777777888889999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 231 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
..++++....|.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999988887777777777788888888999998888877654
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=3.2e-11 Score=111.23 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=89.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG 90 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 90 (331)
.++..+...|+.++|+..+++.... -.........+...+...|++++|+++++++.+.. +.+..++..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 6777777778888888888887721 11122223333557777788888888888888875 335666777778888888
Q ss_pred CHHHHHHHHhhcCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 91 SLDRSLLVFFKLREKNLF--CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
+.++|++.++++.+.+.. .+..++..+...++..+|++.++++.+.+ |-+...+..+..++.+
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQR 215 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888888888888765443 33333333333555555888888887763 3334444444444433
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.6e-11 Score=106.46 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=186.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQV--TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
|-....+..+.|+++.|.+.|.+..+.. |+.. ........+...|+++.|...++.+.+.. |-+..++..+...+
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAY 197 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3344577788899999999999988753 4443 33345777888999999999999999986 44678889999999
Q ss_pred HhhCCHHHHHHHHhhcCCC---ChhhHH----HHHHHHHhCCCHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhccC
Q 043124 87 AKCGSLDRSLLVFFKLREK---NLFCWN----SIIEGLAVHGFAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAG 156 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~---~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~ 156 (331)
...|++++|.+.+..+.+. +...+. .........+..+++.+.+..+.+... +.+...+..+...+...|
T Consensus 198 ~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 198 IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 9999999999999988754 222221 111122233333334445555554421 137788888999999999
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhH---HHHHHHHHHHcCCHHHHHHHHHh-CCCCCcH---HHHHHHHHHHhhcCCHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEH---YGCMVDLLSKAGLLEDALELIRS-SKFQPNA---VIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~---~~~~~l~~~~~~~~~~~~a 229 (331)
+.++|.+.+++..+. .|+... ...........++.+.+.+.+++ ....|+. ....++...+.+.|++++|
T Consensus 278 ~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 278 DHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred ChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 999999999999943 333221 11112223445788888888876 3345543 4556788889999999999
Q ss_pred HHHHHH--HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 230 HIAVNE--LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 230 ~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.+.|++ ..+..|++.. +..+...+.+.|+.++|.+++++...
T Consensus 355 ~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 355 ADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999994 6668888555 57999999999999999999998643
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=7.4e-12 Score=112.59 Aligned_cols=260 Identities=13% Similarity=-0.000 Sum_probs=183.1
Q ss_pred CchhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---------ccCCchHHHHHHHHHHH
Q 043124 4 RDIISWTTMITCYSQ-----NKQFREALDAFNEMKNSGISPDQVTMATVLSACA---------HLGALDLGREIHLYVMQ 69 (331)
Q Consensus 4 p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 69 (331)
.+...|...+++-.. .+++++|..+|++..+.. +-+...|..+..++. ..+++++|...++++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 455666666666422 234678999999998864 224556666655443 23457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 043124 70 IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146 (331)
Q Consensus 70 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 146 (331)
.. +.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|...+++..+.+.. +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 75 44678888888899999999999999998764 3 4567888999999999999999999999887522 333333
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCcHHHH-HHHHHHHhhc
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK-FQPNAVIW-GALLGGCKLH 223 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~-~~l~~~~~~~ 223 (331)
.++..+...|++++|...+++..+.. +| +...+..+..++...|++++|...+++.. ..|+.... +.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34445667889999999999987332 23 35556777888889999999999998753 44554443 4444446666
Q ss_pred CCHHHHHHHHHHHHh---cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 224 RNLEIAHIAVNELMI---LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
| +.|...++++.+ ..|.++.. +...|.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6 477787777766 33443333 55666677887777666 7776654
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.4e-11 Score=97.44 Aligned_cols=273 Identities=14% Similarity=0.071 Sum_probs=177.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhhCCHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI-D--VYIGSALVDMYAKCGSLDR 94 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~ 94 (331)
-+++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++.+.+.++.--+ + ..+...|..=|...|-+|+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4578999999999999863 3355566789999999999999999999888752111 1 2344457778999999999
Q ss_pred HHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCcHHHHHHHHHh
Q 043124 95 SLLVFFKLREKN---LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG----VTFISVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 95 a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 167 (331)
|+++|..+.+.+ ..+...|+..|-..++|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999998743 346778889999999999999999988877644432 2233344444455666666666666
Q ss_pred hhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHh------
Q 043124 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-FQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMI------ 238 (331)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 238 (331)
..... +..+..--.+.+.....|+++.|.+.++... -.|+ ..+...|..+|...|+.++...++.++.+
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 66221 1122233334455666666666666665432 2232 33445555666666666666665555544
Q ss_pred ---------------------------cCCCCcchHHHHHHHHH---hcCCchHHHHHHHHHHhcCCCCCCCccceEEeC
Q 043124 239 ---------------------------LEPNNSGYCTLLLNMYA---EVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288 (331)
Q Consensus 239 ---------------------------~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 288 (331)
.+|+... +..|+..-. ..|...+-..+++.|....++.. |.+.+...+
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~-~~YRC~~CG 361 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK-PRYRCQNCG 361 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc-CCceecccC
Confidence 3444222 233443332 23456777778888877777766 777777776
Q ss_pred CEEEEee
Q 043124 289 RKVYQFA 295 (331)
Q Consensus 289 ~~~~~~~ 295 (331)
...+.+.
T Consensus 362 F~a~~l~ 368 (389)
T COG2956 362 FTAHTLY 368 (389)
T ss_pred Ccceeee
Confidence 6666554
No 38
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=2.5e-14 Score=84.28 Aligned_cols=50 Identities=34% Similarity=0.665 Sum_probs=47.9
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH 53 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 53 (331)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=9.2e-12 Score=99.59 Aligned_cols=199 Identities=14% Similarity=0.045 Sum_probs=142.9
Q ss_pred CCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 043124 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIE 115 (331)
Q Consensus 39 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~ 115 (331)
.....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 345667777778888888888888888877764 34566777778888888888888888876653 24456777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCH
Q 043124 116 GLAVHGFAHEALAMFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194 (331)
Q Consensus 116 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (331)
.+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCH
Confidence 88888888888888888876432 2234455667777888888888888888877322 23456677778888888888
Q ss_pred HHHHHHHHhCC-C-CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 195 EDALELIRSSK-F-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 195 ~~a~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
++|...+++.. . ..+...+..+...+...|+.+.|..+.+.+....
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888877532 2 3345556666677778888888888877766543
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.6e-11 Score=101.47 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=185.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH------------------------------------HHHHccCCch
Q 043124 15 CYSQNKQFREALDAFNEMKNSGISPDQVTMATVL------------------------------------SACAHLGALD 58 (331)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~------------------------------------~~~~~~~~~~ 58 (331)
-+.++|+++.|+++++-+.+..-+.-...-+.|- +.....|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 4778899999999888776653221111111111 1112236778
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR---EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 135 (331)
+|.+.+++.+.....-....|| +.-.+-..|++++|++.|-++. ..++.+...+.+.|-...++..|++++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 8888888877664333333343 3445677899999999887654 45777788888889999999999999988766
Q ss_pred cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCcHHHHH
Q 043124 136 ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-FQPNAVIWG 214 (331)
Q Consensus 136 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 214 (331)
. ++.|+.....|...|-+.|+-..|++.+-.--+ -++.+..+..-|...|....-+++++..|++.. ++|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 5 677788899999999999999999998766552 235678888888899999999999999999854 799999999
Q ss_pred HHHHHH-hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 043124 215 ALLGGC-KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRW 260 (331)
Q Consensus 215 ~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 260 (331)
.++..| .+.|++++|.++++...+..|.+......|++.+...|..
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 888775 5789999999999999999999999999999999888753
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.2e-10 Score=94.68 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=172.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 98 (331)
.|+|.+|+++..+-.+.+-. ....|..-..+..+.|+.+.+-+++.++.+..-.++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999999998887644 34556666778888999999999999988874466777788888889999999999887
Q ss_pred HhhcC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCcHHHHHHHHHhh
Q 043124 99 FFKLR---EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG-------VTFISVLSACTHAGLVEEGRRRFLSM 168 (331)
Q Consensus 99 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 168 (331)
+.++. ..++........+|.+.|+|..+..++.+|.+.|.-.++ .++..++.-+...+..+.-.+.|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 76654 457788999999999999999999999999998865443 45666777666667777666777777
Q ss_pred hhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc--------------------------------HHHHHH
Q 043124 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN--------------------------------AVIWGA 215 (331)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~--------------------------------~~~~~~ 215 (331)
..+. .-++..-.+++.-+.+.|+.++|.+++++ ++-.-| +..+.+
T Consensus 256 pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 256 PRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred cHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 6433 34455566677778888888888777654 221111 233444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
|...|.+.+.+.+|...|+.+++..|+ ...|..+..++.+.|+.++|.++.++..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444455555555555555555554444 3334555555555555555555555444
No 42
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.5e-11 Score=100.81 Aligned_cols=245 Identities=10% Similarity=0.182 Sum_probs=127.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCCchHHHH-HHHHHHHhCCCCchhHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSA--CAHLGALDLGRE-IHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l 82 (331)
+.+=|.|++.- ..|....+.-+|+.|.+.|+..++..-..|+.. |.+..++--+++ .|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 44556666654 567788888999999999988888776666653 333333332221 222233222 1122222
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
+.|.+.+ ++-+...+...+|.+||.++|+--..+.|.+++++..+...+.+..+||.+|.+-+-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 2333322 333444444555666666666655566666666655555455555566655554332222 4
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHH----H---HHhCCCCCcHHHHHHHHHHHhhcCCHH-HHHHHHH
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE----L---IRSSKFQPNAVIWGALLGGCKLHRNLE-IAHIAVN 234 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~---~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~ 234 (331)
+++.+|. ...+.||..|+|+++++..+.|+++.|.. + ++++|+.|...+|..+|..+.+.++.. .+..++.
T Consensus 259 ~Lv~EMi-sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 259 KLVAEMI-SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHH-HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 4555555 44555666666666666666665554422 2 233455666666666665555544432 2333333
Q ss_pred HHHh---------cCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 043124 235 ELMI---------LEPNNSGYCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 235 ~~~~---------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
++.. ..|++..+|..-+..|.+..+.+-|.++..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ 380 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHG 380 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3322 334444445555555555555555555443
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=3.1e-12 Score=113.22 Aligned_cols=232 Identities=16% Similarity=0.203 Sum_probs=143.5
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCC
Q 043124 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106 (331)
Q Consensus 27 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 106 (331)
.++..+...|+.|+..||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678888999999999999999999999999998 9999988888888999999999999999887775 788
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 107 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
..+|+.|..+|..+||... ++..++ ....+...+...|.-..-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8999999999999999765 222222 11122333344444444444444433222233332 22344
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 043124 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHR-NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 265 (331)
...-.|-++.+++++..++......++..+++-+.... .+++-....+...+ .|+ +..|..++.+-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 44555556666666655542111111111233333222 23333333333333 343 4555666666666666666666
Q ss_pred HHHHHHhcCCCCCCCccce
Q 043124 266 IRVAMKELGIEKRCPGSSW 284 (331)
Q Consensus 266 ~~~~m~~~~~~~~~~~~~~ 284 (331)
++.+|++.|++.+ +++.|
T Consensus 226 ll~emke~gfpir-~HyFw 243 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIR-AHYFW 243 (1088)
T ss_pred HHHHHHHcCCCcc-cccch
Confidence 6666666666666 55555
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=1.3e-11 Score=106.64 Aligned_cols=231 Identities=15% Similarity=0.111 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHh-----C-CCCchhH-HHHHHHHHHhhCCHHHHHHHHhhcCC-------C--
Q 043124 42 VTMATVLSACAHLGALDLGREIHLYVMQI-----G-FDIDVYI-GSALVDMYAKCGSLDRSLLVFFKLRE-------K-- 105 (331)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-- 105 (331)
.+...+...|...|+++.|+.++++.++. | ..|.+.+ .+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667888999999999999999988775 2 1233333 33478889999999999999987763 1
Q ss_pred --ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCcH-HHHHHHHHHHhccCcHHHHHHHHHhhhhcCC--C
Q 043124 106 --NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-----N-VEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYS--I 174 (331)
Q Consensus 106 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 174 (331)
-..+++.|..+|.+.|++++|...+++..+. | ..|.. ..++.+...|...+++++|..++....+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2357888999999999999988888876542 2 12332 3355677788999999999999987664222 1
Q ss_pred CC----cHhHHHHHHHHHHHcCCHHHHHHHHHhC-------C--CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh--
Q 043124 175 TP----EVEHYGCMVDLLSKAGLLEDALELIRSS-------K--FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMI-- 238 (331)
Q Consensus 175 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 238 (331)
.+ ...+++.|...|...|++++|.+++++. . ..+. ...++.+...|.+.+++..|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2468999999999999999999998853 1 2233 55678888889999999999999998876
Q ss_pred --cC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 239 --LE---PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 239 --~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.+ |+....|..|+.+|.+.|+++.|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 45556788999999999999999999988763
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-10 Score=98.24 Aligned_cols=260 Identities=10% Similarity=0.024 Sum_probs=211.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
+...-.-..-|...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-++...
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444566778899999999999998874 667777777777888899988777777777776 46678899999999
Q ss_pred HHhhCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 86 YAKCGSLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
|.-.|+..+|.+.|.+...-|. ..|-.++..|+-.|..++|...|...-+. ++-...-+.-+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998765543 58999999999999999999999887665 2222222333555688999999999
Q ss_pred HHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-cHHHHHHHHHHHhhcCCHHHHHHH
Q 043124 163 RRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK--------FQP-NAVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
++|.... ++.| |+...+-+.-.....+.+.+|...|+... -.+ ...+++.|..+|.+.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999988 4445 57777777777778899999999887521 112 456788899999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 233 VNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 233 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+++++...|.+..+|..++-.|...|+++.|.+.|.+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.9e-12 Score=100.15 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=194.4
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhC
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVH 120 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 120 (331)
-+.+..+|.+.|.+.+|...++..++. .|-+.||..|-.+|.+..+...|+.+|.+-.+. |+....-+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 357888999999999999999988886 456778888999999999999999999988763 444555677888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHH
Q 043124 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200 (331)
Q Consensus 121 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 200 (331)
++.++|.++|+...+.. +.+.....++...|.-.++.+.|.++|+++. ..|+. ++..|+.+..+|.-.++++-++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998874 5677888888888999999999999999999 66754 677899999999999999999999
Q ss_pred HHhCC---CCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 201 IRSSK---FQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 201 ~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
|++.. .+|+ ...|..+-...+..||+..|.+.|+-++..+|++...++.|...-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88632 3454 4578888888899999999999999999999999999999999999999999999999987754
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=2.4e-10 Score=101.79 Aligned_cols=264 Identities=16% Similarity=0.171 Sum_probs=157.7
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
...|.+|...|-+.|+.+++...+-..-..+ +-|...|..+.....+.|+++.|.-.|.++++.. +++....-.-...
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L 250 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSL 250 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHH
Confidence 3444445555555555544444433332221 2233444444444444555555555555555543 2333333334445
Q ss_pred HHhhCCHHHHHHHHhhcCCCCh--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccC
Q 043124 86 YAKCGSLDRSLLVFFKLREKNL--------FCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAG 156 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~ 156 (331)
|-+.|+...|.+.|.++.+.++ ..-...+..+...++.+.|.+.++.....+ -..+...++.++..+.+..
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 5555555555555555543211 111122344444555555555555554421 1223344455555555555
Q ss_pred cHHHHHHHHHhhhh------------------------------------------------------------cCCC--
Q 043124 157 LVEEGRRRFLSMTC------------------------------------------------------------GYSI-- 174 (331)
Q Consensus 157 ~~~~a~~~~~~~~~------------------------------------------------------------~~~~-- 174 (331)
.++.|......+.. ...+
T Consensus 331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 55555555444442 0011
Q ss_pred CCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 043124 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ---PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLL 251 (331)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 251 (331)
.-+...|.-+..+|...|++.+|+.+|..+... -+...|..+.++|...|.+++|.+.+++++...|++......|.
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 112446667778889999999999999876422 24668899999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHH
Q 043124 252 NMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 252 ~~~~~~g~~~~a~~~~~~m~ 271 (331)
..+.+.|+.++|.+.+..+.
T Consensus 491 sl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhcCCHHHHHHHHhccc
Confidence 99999999999999998876
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.3e-10 Score=92.25 Aligned_cols=223 Identities=15% Similarity=0.048 Sum_probs=159.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
|-.-..+--+.|+++.+-.++.+.-+.--.++...+-+........|+.+.|..-.+++.+.+ +.+..+.....++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 333344555566777777766666654223344444455555666667777766666666664 3345556666667777
Q ss_pred hCCHHHHHHHHhhcCC---------------------------------------------CChhhHHHHHHHHHhCCCH
Q 043124 89 CGSLDRSLLVFFKLRE---------------------------------------------KNLFCWNSIIEGLAVHGFA 123 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~---------------------------------------------~~~~~~~~li~~~~~~~~~ 123 (331)
.|++.....++..+.+ .++..-..++.-+.+.|+.
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 7776666666655542 1344455666778889999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
++|.++..+..+.+..|+.. ..-.+.+-++.+.-++..+...+..+..| ..+.+|...|.+.+.+.+|...|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999888887766622 22356677888877777777775554444 6888899999999999999999996
Q ss_pred -CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 204 -SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 204 -~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
+...|+..+|+.+..++.+.|+..+|.+..++.+.
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56889999999999999999999999999999886
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=5e-13 Score=78.66 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=42.2
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 105 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888764
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.4e-10 Score=96.12 Aligned_cols=251 Identities=11% Similarity=0.073 Sum_probs=199.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 15 CYSQNKQFREALDAFNEMKNSGI--SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+.-...++++|+.+|+++.+... --|..+|+.++-+-.... .+..+.+-...--+-.+.|+..+.+.|.-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 34456899999999999998742 126678887775543221 222332222111123466888899999999999
Q ss_pred HHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 93 DRSLLVFFKLREKN---LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 93 ~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
++|...|++..+-| ..+|+.++.-|....+...|.+.|+..++.+ |.|-..|-.|..+|.-.+.+.-|.-+|++..
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 99999999887644 4689999999999999999999999999985 6688899999999999999999999999988
Q ss_pred hcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-------cC
Q 043124 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI-------LE 240 (331)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~ 240 (331)
... +-|...|.+|..+|.+.++.++|+++|+..- -..+...+..|...+-+.++.++|...+++.++ ..
T Consensus 426 -~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 -ELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred -hcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 331 4468999999999999999999999999742 244668899999999999999999999999887 34
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
|....+...|..-+.+.+++++|.........
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 54455555688889999999999987766553
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=8.6e-11 Score=93.01 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=179.2
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC-CCh------hhHHHHHH
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNL------FCWNSIIE 115 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------~~~~~li~ 115 (331)
.|..=++.+ -+.+.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|.+|+|+.+-+.+.+ ||. .+...|..
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 344334433 4578999999999999864 44677888999999999999999999988765 433 35566788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc----HhHHHHHHHHHHHc
Q 043124 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCMVDLLSKA 191 (331)
Q Consensus 116 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 191 (331)
-|...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|+.+-+++. +.+-.+. ...|.-|...+...
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhh
Confidence 8999999999999999998865 3445677789999999999999999999888 3332222 23456666666778
Q ss_pred CCHHHHHHHHHhC-CCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCCchHHHHHHH
Q 043124 192 GLLEDALELIRSS-KFQPNAVIWG-ALLGGCKLHRNLEIAHIAVNELMILEPNNS-GYCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 192 ~~~~~a~~~~~~~-~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
.+.++|...+.+. ...|+..--+ .+.......|+++.|.+.++.+.+.+|+.. .+...|..+|...|+.++....+.
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8999999999863 4555543333 444558899999999999999999888743 345678899999999999999999
Q ss_pred HHHhcCCCCC
Q 043124 269 AMKELGIEKR 278 (331)
Q Consensus 269 ~m~~~~~~~~ 278 (331)
++.+....++
T Consensus 274 ~~~~~~~g~~ 283 (389)
T COG2956 274 RAMETNTGAD 283 (389)
T ss_pred HHHHccCCcc
Confidence 9887654443
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=5.1e-11 Score=107.22 Aligned_cols=227 Identities=12% Similarity=-0.028 Sum_probs=170.8
Q ss_pred CHhhHHHHHHHHH-----ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------hCCHHHHHHHHhhcCCC
Q 043124 40 DQVTMATVLSACA-----HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK---------CGSLDRSLLVFFKLREK 105 (331)
Q Consensus 40 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~ 105 (331)
+...|...+.+-. ..++.++|...++++++.. +.+...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555555431 2245679999999998874 3345667666665542 24488999999987753
Q ss_pred ---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHH
Q 043124 106 ---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHY 181 (331)
Q Consensus 106 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 181 (331)
+..++..+...+...|++++|...|++..+.+ |.+...+..+...+...|++++|...+++..+. .|+ ...+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 56788889999999999999999999999885 455677888889999999999999999999833 343 2233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC--CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 182 GCMVDLLSKAGLLEDALELIRSSK--FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
..++..+...|++++|...+++.. ..|+ ...+..+..++...|+.++|...++++....|........+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 344555777899999999998752 2354 4456667777889999999999999988888887777777888888888
Q ss_pred CchHHHHHHHHHHhc
Q 043124 259 RWAEVTKIRVAMKEL 273 (331)
Q Consensus 259 ~~~~a~~~~~~m~~~ 273 (331)
+.|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4788878777653
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.2e-11 Score=96.53 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=194.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (331)
+-+.++|.+.|-+.+|...|+...+. .|-+.||..|-.+|.+..++..|+.++.+-++. ++-++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45789999999999999999999886 677889999999999999999999999988876 455665566678889999
Q ss_pred CCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 043124 90 GSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166 (331)
Q Consensus 90 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 166 (331)
++.++|.++|+...+. ++.+...+...|.-.++++-|+..|+++.+.|+ -++..|+.+.-+|.-.+++|-+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988753 566666777788889999999999999999996 477888889999999999999999999
Q ss_pred hhhhcCCCCCc--HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 167 SMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 167 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
+.. ..--.|+ ..+|-.+....+..|++.-|.+.|+-. .-.| +...++.|...-.+.|+++.|..++..+..+.|+
T Consensus 383 RAl-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RAL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 887 3333344 457777888888999999999999853 2333 4778898888889999999999999999998887
Q ss_pred Ccc
Q 043124 243 NSG 245 (331)
Q Consensus 243 ~~~ 245 (331)
-..
T Consensus 462 m~E 464 (478)
T KOG1129|consen 462 MAE 464 (478)
T ss_pred ccc
Confidence 443
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=5.4e-11 Score=102.93 Aligned_cols=231 Identities=11% Similarity=0.061 Sum_probs=176.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC-CCCHhh-HHHHHHHHHccCCchHHHHHHHHHHHh-----CC--C
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNS-----GI-SPDQVT-MATVLSACAHLGALDLGREIHLYVMQI-----GF--D 73 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 73 (331)
+...|...|...|+++.|+.++++..+. |. .|...+ .+.+...|...+++++|..+|+.++.. |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3445899999999999999999988764 21 233333 344777889999999999999998764 21 1
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhhcCC----------CCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC
Q 043124 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----------KNL-FCWNSIIEGLAVHGFAHEALAMFDRMIYE---NVE 139 (331)
Q Consensus 74 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~ 139 (331)
--..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245788888899999999998887776542 122 25777888899999999999999877643 112
Q ss_pred C----cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC----C--CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 043124 140 P----NGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----S--ITPEVEHYGCMVDLLSKAGLLEDALELIRSS----- 204 (331)
Q Consensus 140 p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----- 204 (331)
+ ...+++.+...|.+.|++++|..+++...... + ..-....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 34678899999999999999999999877422 1 1222567788899999999999888888752
Q ss_pred --C-CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 205 --K-FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 205 --~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
| ..|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 3454 57899999999999999999999999875
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.41 E-value=1.3e-09 Score=97.19 Aligned_cols=280 Identities=13% Similarity=0.073 Sum_probs=192.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
........|++++|..++.+..+.. +.+...|..|..+|-+.|+.+++...+-.+.-.+ +-|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 3444555699999999999999875 5578899999999999999999988875554443 4467899999999999999
Q ss_pred HHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHhccCcHHHHHHH
Q 043124 92 LDRSLLVFFKLREKNL---FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV----TFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 92 ~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~ 164 (331)
+++|.-.|.+..+.++ ..+-.-+..|-+.|+...|...|.++.....+.|-. +.-..+..+...++-+.|.+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998876443 344445678999999999999999999874222222 223345667777888999999
Q ss_pred HHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC------------------------------CCCc-----
Q 043124 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK------------------------------FQPN----- 209 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------------~~p~----- 209 (331)
++......+-..+...++.++..|.+...++.|...+.... ..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 98887544444456677788888888887777765543210 0111
Q ss_pred -------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhc
Q 043124 210 -------------------------------AVIWGALLGGCKLHRNLEIAHIAVNELMILEPN-NSGYCTLLLNMYAEV 257 (331)
Q Consensus 210 -------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 257 (331)
...|.-+..++...|+++.|.+++..+....+. +...|..++++|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 122344445555566666666666665554432 233455566666666
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 258 SRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 258 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
|.+++|.+.|+... ...|++..+...|+.|+..++.
T Consensus 463 ~e~e~A~e~y~kvl---------------------------~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVL---------------------------ILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred hhHHHHHHHHHHHH---------------------------hcCCCchhhhhhHHHHHHhcCC
Confidence 66666666666655 4556777777777777665543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.8e-10 Score=93.56 Aligned_cols=307 Identities=15% Similarity=0.110 Sum_probs=214.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPD-QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
.+-...+-|.++|++++|++.|.+..+. .|| +.-|.....+|...|+++.+.+.-...++.+ +.-+..+.--.+++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 3455667789999999999999999985 677 6778888888999999999988887777653 11244555555566
Q ss_pred HhhCCHHHHHH----------------------HHh---------hcCC------CC-----------------------
Q 043124 87 AKCGSLDRSLL----------------------VFF---------KLRE------KN----------------------- 106 (331)
Q Consensus 87 ~~~g~~~~a~~----------------------~~~---------~~~~------~~----------------------- 106 (331)
-..|++++|+. +++ .+.+ |.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 66666666552 010 0000 00
Q ss_pred ----------------------------------------------------hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043124 107 ----------------------------------------------------LFCWNSIIEGLAVHGFAHEALAMFDRMI 134 (331)
Q Consensus 107 ----------------------------------------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~ 134 (331)
..+...-...+.-.|+.-.|..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0001111111334567777888888887
Q ss_pred HcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHH
Q 043124 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVI 212 (331)
Q Consensus 135 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~ 212 (331)
+.... +...|..+...|...++.++.++.|+....-. +-++.+|..-.+.+.-.+++++|..-|++. .+.|+ ...
T Consensus 354 ~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred hcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 76433 23337778888999999999999999998322 334678888888899999999999999874 46664 666
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC---CCccceEEeCC
Q 043124 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR---CPGSSWIEMER 289 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~~~~~ 289 (331)
|-.+..+..+.+++++++..|++.++..|+.+..|+....++...++++.|.+.|+...+.-.... +.....|....
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 777777778899999999999999999999999999999999999999999999999876543311 01111222222
Q ss_pred EEEEeec-----------CCCCCCCchHHHHHHHHHHHHHHh
Q 043124 290 KVYQFAA-----------SDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 290 ~~~~~~~-----------~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
.+.++-. .-+.+|....++..|+++--++++
T Consensus 511 l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 511 LVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 2222110 017888888888888887655543
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=5.9e-10 Score=92.27 Aligned_cols=229 Identities=13% Similarity=-0.019 Sum_probs=150.1
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 043124 20 KQFREALDAFNEMKNSG-ISPD--QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96 (331)
Q Consensus 20 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 96 (331)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|+++++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34456777777777542 1222 3457777778888899999999998888875 446788888889999999999999
Q ss_pred HHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC
Q 043124 97 LVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173 (331)
Q Consensus 97 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (331)
+.|++..+ | +..+|..++.++...|++++|.+.|++..+.+ |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 98888754 3 45678888888888999999999999888764 332222222233445678889998887655221
Q ss_pred CCCcHhHHHHHHHHHHHcCCHH--HHHHHHHh-CCC----CC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC-CCc
Q 043124 174 ITPEVEHYGCMVDLLSKAGLLE--DALELIRS-SKF----QP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEP-NNS 244 (331)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~-~~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~ 244 (331)
.|+...+ .+.. ...|+.. ++++.+.+ ... .| ....|..+...+...|++++|...|+++++..| +..
T Consensus 196 -~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 -DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred -CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3332222 2332 2344443 33333332 111 12 235677888888899999999999999998886 444
Q ss_pred chHHHHHHHHHh
Q 043124 245 GYCTLLLNMYAE 256 (331)
Q Consensus 245 ~~~~~l~~~~~~ 256 (331)
.+-..++.....
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 443444444433
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=3.7e-10 Score=101.34 Aligned_cols=267 Identities=10% Similarity=0.038 Sum_probs=188.9
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCCH------hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNS---GISPDQ------VTMATVLSACAHLGALDLGREIHLYVMQIGFDI 74 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 74 (331)
+-....|.+...+...|++.+|...|.+.+.. ...+|. .+-..+....-..++.+.|.+.+..+++.. +-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~ 528 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PG 528 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-ch
Confidence 34455677777777777777777777776654 112222 122234455556667777777777777653 22
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGVTFISVLS 150 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~ 150 (331)
-...|.-++......+...+|...+..... .++.++..+...+.....|..|.+-|+...+.- ..+|.++...|.+
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 233333333333344667777777776654 466788888888888888988888777766542 2367777767766
Q ss_pred HHhc------------cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHH
Q 043124 151 ACTH------------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGAL 216 (331)
Q Consensus 151 ~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l 216 (331)
.|.. .+..++|+++|.++.+.. +.+...-|.+.-.++..|++.+|.++|.+.. ..-...+|..+
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 5542 256788999999988322 5577788888888999999999999998754 22345678889
Q ss_pred HHHHhhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 217 LGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 217 ~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..+|+..|++-.|.+.|+..++ ..-+++.+...|.+++.+.|++.+|.+.....+..
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988 33466778889999999999999999888777654
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=2.8e-09 Score=95.93 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=197.2
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGIS--PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
..|.+..+.|.+.|...|++..+..+...+...... .-...|-.+.+++...|+++.|...|.+..+....-....+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 456777888999999999999999999888765311 123457788999999999999999998777654221234455
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHG----FAHEALAMFDRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
-+...|.+.|+++.+...|+.+.+. +..+..+|...|...+ ..+.|..++.+..+.- +-|...|..+...+-
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 6788999999999999999988653 5567778888887775 4577777777776653 556777777766655
Q ss_pred ccCcHHHHHHHHHhhhh---cCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC------CCCcH------HHHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTC---GYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK------FQPNA------VIWGALLG 218 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~p~~------~~~~~l~~ 218 (331)
..+-+ .+...|..... ..+-.+.+...|.+...+...|++++|...|++.. ..+|. .+-..+..
T Consensus 426 ~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 44433 33555544331 22334667788999999999999999999887531 22332 23444566
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..-..++.+.|.+.+..+++..|.....|..++.+-...++..+|...++...+.
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 6677889999999999999999998888888886666778889999999887754
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.8e-10 Score=96.06 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=177.9
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHH
Q 043124 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 126 (331)
.+.-.|+.-.|..-|+..++....+ ...|--+..+|....+-++....|....+ .|+.+|..-...+.-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 3456789999999999999875443 33477778889999999999999987764 3677899888888889999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CC
Q 043124 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SK 205 (331)
Q Consensus 127 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~ 205 (331)
..=|++.+..+ +-+...|.-+..+..+.+.+++++..|++.++++ +.-+..|+.....+...+++++|.+.|+. +.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999875 4567788888888889999999999999999654 55577899999999999999999999985 33
Q ss_pred CCCc---------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 206 FQPN---------AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 206 ~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+.|+ ....-.++.. .=.+++..|..+++++++++|.....|..|...-.+.|+.++|+++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333 2222222222 1238999999999999999999999999999999999999999999998653
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.5e-09 Score=87.63 Aligned_cols=229 Identities=10% Similarity=0.022 Sum_probs=123.9
Q ss_pred CCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHH
Q 043124 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSI 113 (331)
Q Consensus 37 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l 113 (331)
.+.|......+...+...|+.+.|+..|++....+ +-+........-.+.+.|++++...+...+... ....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 45566667777777777788888877777766543 112222333333345556666555554444322 22334444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCC-CcHhHHHHHHHHHHHcC
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT-PEVEHYGCMVDLLSKAG 192 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 192 (331)
+..+...++++.|+.+-++.++.+ +-+...|..-...+...++.++|.-.|+... .+. .+...|..|+..|...|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhc
Confidence 444445555555555555555443 2233444444445555555555555555554 112 23455555555555555
Q ss_pred CHHHHH------------------------------------HHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 193 LLEDAL------------------------------------ELIRS-SKFQPN-AVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 193 ~~~~a~------------------------------------~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
.+.+|. .++++ +..+|+ ....+.+...|...|..+.+..+++
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 555554 33332 234444 3344455555666666666666666
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 235 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+.+...|+.. ....|+..+...+.+++|.+.|....
T Consensus 463 ~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 463 KHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666633 33666666666666666666666655
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=3.6e-10 Score=93.55 Aligned_cols=213 Identities=11% Similarity=0.001 Sum_probs=153.4
Q ss_pred cCCchHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHH
Q 043124 54 LGALDLGREIHLYVMQIG-FDID--VYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEAL 127 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 127 (331)
.+..+.++.-+.+++... ..|+ ...|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346677777777777542 2222 45678888899999999999999988764 35679999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC--
Q 043124 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-- 205 (331)
Q Consensus 128 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 205 (331)
..|++..+.. +-+..++..+...+...|++++|.+.|+...+. .|+..........+...+++++|...+++..
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999864 335677888888899999999999999999833 4442222222223446788999999996532
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 206 FQPNAVIWGALLGGCKLHRNLEIAHIAVNELM-------ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 206 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
..|+...+ .+. ....|+...+ ..++.+. +..|.....|..++..+.+.|++++|...|++..+.+
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332222 222 2234554433 2444443 3456667789999999999999999999999998654
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.34 E-value=6.5e-09 Score=89.94 Aligned_cols=262 Identities=10% Similarity=-0.013 Sum_probs=217.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
..+|+.-...|.+.+.++-|..+|....+.- +-+...|......--..|..++...+++++... .+-....|-....-
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 3578888889999999999999999998863 446677877777777789999999999999887 34466677777888
Q ss_pred HHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 86 YAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
+...|++..|..++...-+ .+...|.+-+.....+.+++.|..+|.+.... .|+...|..-+...--.++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 8899999999999887754 25568999999999999999999999998774 678888877777777789999999
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
+++++..+.+ +.-...|..+.+.+-+.++.+.|.+.|.. ....|+ +..|..|...--+.|++-+|..++++..-.+
T Consensus 672 rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9999988543 22356788888889999999999988875 445565 5667777777778889999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
|.+...|...|++-.+.|+.+.|..++.+.+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988877653
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=5.8e-09 Score=90.22 Aligned_cols=266 Identities=8% Similarity=0.010 Sum_probs=149.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
|-...+.+-..|+...|..++.+..+.. +.+...|-..+..-.....++.|..+|.+.... .|+..+|..-++...-
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 3333444444555555555555555543 224455555555555555555555555544442 2344444444444444
Q ss_pred hCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 89 CGSLDRSLLVFFKLREK--N-LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
.++.++|.+++++..+. + ...|-.+...+-+.++.+.|.+.|..-.+. .|-....|..+...--+.|..-.|..++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 45555555555544432 1 123444444555555555555554443322 2222333333333334444555555555
Q ss_pred HhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHH----------------------------------HHHhCCCCCcHH
Q 043124 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE----------------------------------LIRSSKFQPNAV 211 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----------------------------------~~~~~~~~p~~~ 211 (331)
++..-++ +-+...|-..|++-.+.|+.+.|.. -+++. .-|..
T Consensus 743 drarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dph 818 (913)
T KOG0495|consen 743 DRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPH 818 (913)
T ss_pred HHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCch
Confidence 5544221 3344455555555555555554443 33333 23444
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceE
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWI 285 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 285 (331)
....+...+-...++++|.+.|.+++..+|++-.+|..+...+.+.|.-+.-.++++..... .|. -|..|.
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~-hG~~W~ 889 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPT-HGELWQ 889 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCC-CCcHHH
Confidence 55566667888899999999999999999999999999999999999988888999887743 444 444453
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.6e-09 Score=89.83 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH----------------------------------HHHH
Q 043124 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG----------------------------------RRRF 165 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a----------------------------------~~~~ 165 (331)
.|++++|.+.|.+.+..+-..+...||. .-.+-..|+.++| ++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677777777777766543333333332 2223344444444 4444
Q ss_pred HhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SK-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
-+.. .-++.|+.....|...|-+.|+-..|+++.-+ -. +.-+..+...|...|....-+++++.+|+++.-+.|+.
T Consensus 582 ~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 4433 12344577777888888888888888777543 33 44467777778777888888999999999998899996
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
...-..+..++.+.|++.+|.++++....
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65555566778889999999999998864
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=9e-10 Score=83.39 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
+...|...|.+.|+...|..-+++.++.. |.+..++..+...|.+.|..+.|.+.|++..... +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHH
Confidence 34455566666666666666666666653 3345556666666666666666666666666211 22355566666666
Q ss_pred HHcCCHHHHHHHHHhCCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 043124 189 SKAGLLEDALELIRSSKFQPN----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 264 (331)
|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 666666666666665322221 3455556556666667777777777776666666666666666666667776666
Q ss_pred HHHHHHHhcC
Q 043124 265 KIRVAMKELG 274 (331)
Q Consensus 265 ~~~~~m~~~~ 274 (331)
.+++.....+
T Consensus 194 ~~~~~~~~~~ 203 (250)
T COG3063 194 LYLERYQQRG 203 (250)
T ss_pred HHHHHHHhcc
Confidence 6666665444
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=7.3e-09 Score=90.87 Aligned_cols=259 Identities=12% Similarity=0.044 Sum_probs=183.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh---
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC--- 89 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 89 (331)
...+...|++++|++.++.-.+. +......+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34567889999999999886654 44344555677888999999999999999999997 44666666666666333
Q ss_pred --CCHHHHHHHHhhcCCCCh--hhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 043124 90 --GSLDRSLLVFFKLREKNL--FCWNSIIEGLAVHGFA-HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 90 --g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 164 (331)
.+.+...++|+++.+.-+ .+...+.-.+.....+ ..+...+..+...|+|+ +|+.+-..|......+-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 256777888887764322 2222222222221223 34556667778888654 455555566655555555555
Q ss_pred HHhhhhcC-------------CCCCcH--hHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHH
Q 043124 165 FLSMTCGY-------------SITPEV--EHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLE 227 (331)
Q Consensus 165 ~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~ 227 (331)
+....... .-+|+. .++..+.+.|-..|++++|++++++ +...|+ +..|..-.+.+-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55543211 113444 3456667888999999999999996 556776 677777888899999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 228 IAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 228 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
+|.+.++.+..+++.+.-.-+-.+..+.+.|++++|.+++..+-..+..
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 9999999999999988777667788889999999999999998766653
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=7.2e-09 Score=78.60 Aligned_cols=200 Identities=14% Similarity=-0.014 Sum_probs=122.4
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAV 119 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 119 (331)
+..-|.-.|...|+...|..-++++++.. +.+..+|..+...|.+.|+.+.|.+.|++..+ .+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34455556667777777777777776664 33455666666677777777777777765543 244566666667777
Q ss_pred CCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHH
Q 043124 120 HGFAHEALAMFDRMIYEN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 198 (331)
.|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.. +-.......+.......|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777666542 11223456666666666777777777777766221 112334555666666777777776
Q ss_pred HHHHhC--CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc
Q 043124 199 ELIRSS--KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245 (331)
Q Consensus 199 ~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 245 (331)
.+++.. +..++..+....|+.-...|+.+.+.++=..+.+..|.+..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 666542 23356666666666666677777776666666666666443
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.6e-09 Score=89.30 Aligned_cols=246 Identities=11% Similarity=0.012 Sum_probs=194.0
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
+++...+-.=|.++...|+..+-..+=.++.+. .+-.+.+|-++.--|...|+..+|++.|.+...... .-...|-.+
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~f 352 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAF 352 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHH
Confidence 345556666688999999999988888888887 355778899998888888999999999998877642 235678899
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
...|+-.|..|+|+..+....+ .....+--+.--|.+.++.+.|.+.|.+.... .|.|+...+-+.-.....+.+.
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhH
Confidence 9999999999999998876543 22233444556788899999999999999876 3567777777777777889999
Q ss_pred HHHHHHHhhhhcC-CCC----CcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCcHHHHHHHHHHHhhcCCHHHHHHH
Q 043124 160 EGRRRFLSMTCGY-SIT----PEVEHYGCMVDLLSKAGLLEDALELIRSS-KF-QPNAVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 160 ~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
+|..+|+.....- .+. --..+++.|..+|.+.+.+++|+..+++. .. +-+..++.++.-.+...|+++.|.+.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 9999998876211 111 12346888999999999999999999973 33 44788889998899999999999999
Q ss_pred HHHHHhcCCCCcchHHHHH
Q 043124 233 VNELMILEPNNSGYCTLLL 251 (331)
Q Consensus 233 ~~~~~~~~p~~~~~~~~l~ 251 (331)
|.+++.+.|++..+-..|.
T Consensus 512 fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHhcCCccHHHHHHHH
Confidence 9999999999876634333
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=1.2e-09 Score=97.32 Aligned_cols=249 Identities=13% Similarity=0.104 Sum_probs=183.3
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
.||.+||..+|..||..|+.+.|- +|.-|+-...+.+...|+.++.+....++.+.+. .|...+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 488899999999999999999998 9999988888888999999999999999888776 6788999999
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
..+|...||+.- .+..++ -...+...+...|.-.....++..+.-. +.-||..+ .+......|-++.+
T Consensus 90 l~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaql 158 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHH
Confidence 999999999876 222222 1223444555666656566665553322 24455544 44456667888888
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHH-HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLL-SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
.+++..+-......|... .++-+ .....+++-....+...-.|+..++..++.+....|+.+.|..++.+|.+.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 888877763222223222 12222 2334555555555555446999999999999999999999999999999844
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCcc
Q 043124 241 -PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS 282 (331)
Q Consensus 241 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 282 (331)
|-..++|..|+.+ .|+..-+..+++.|.+.|+.|+ +..
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~-seT 273 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG-SET 273 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC-cch
Confidence 7777777777665 8888899999999999999998 444
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=6.9e-10 Score=90.72 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=164.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
++.+.-.|++..++.-.+ ........+......+.+++...|..+.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 556667888988886655 332222223345556778888888876543 3443433 66666666666555544556
Q ss_pred HHHHHHHhhcC-CC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh
Q 043124 93 DRSLLVFFKLR-EK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 93 ~~a~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 167 (331)
+.+..-+++.. ++ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666665543 22 2222333345567789999999888652 3566677788889999999999999999
Q ss_pred hhhcCCCCCcHhHHHHHHHHHHH----cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 043124 168 MTCGYSITPEVEHYGCMVDLLSK----AGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241 (331)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 241 (331)
|. +. ..| .+...+..++.. .+.+.+|..+|+++. ..+++.+.+.+..+....|++++|.+++++++..+|
T Consensus 157 ~~-~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQ-QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HH-CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HH-hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 98 32 334 333345554432 347899999999864 457788888888889999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCc-hHHHHHHHHHHhc
Q 043124 242 NNSGYCTLLLNMYAEVSRW-AEVTKIRVAMKEL 273 (331)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 273 (331)
+++.+...++.+....|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999988999988888888 5677788887643
No 72
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8.7e-08 Score=80.20 Aligned_cols=266 Identities=12% Similarity=0.108 Sum_probs=193.1
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC---chhHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI---DVYIG 79 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 79 (331)
+|+..+|++.|+.=.+.+.++.|..+|++..-. .|+..+|-.....--+.|....+..+++.+.+. +.. +...+
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d~~~e~lf 247 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDDEEAEILF 247 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 588888999998888888889999988888764 578888877777777888888888888877654 111 12233
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcC--------------------------------------------CC---ChhhHHH
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLR--------------------------------------------EK---NLFCWNS 112 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~--------------------------------------------~~---~~~~~~~ 112 (331)
.+....-.++..++.|..+|+-.. +. |-.+|--
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 333333344455555554443211 01 2346777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHH---HhccCcHHHHHHHHHhhhhcCCCCCcHhHHH
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNG-------VTFISVLSA---CTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (331)
.+..--..|+.+...++|++.+.. ++|-. ..|.-+=-+ -....+.+.+.++|+... + -|+....|+.
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l-~-lIPHkkFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL-D-LIPHKKFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-h-hcCcccchHH
Confidence 777777889999999999999876 56632 122211111 135688999999999988 3 3444455655
Q ss_pred HHHHHH----HHcCCHHHHHHHHHh-CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 043124 183 CMVDLL----SKAGLLEDALELIRS-SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 183 ~l~~~~----~~~~~~~~a~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 257 (331)
.+--.| .++.++..|.+++.. +|..|...+|...|..-.+.++++.+..++++.++.+|.+..+|......-...
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence 544444 578899999999875 788899999999999989999999999999999999999888888888888888
Q ss_pred CCchHHHHHHHHHHhcC
Q 043124 258 SRWAEVTKIRVAMKELG 274 (331)
Q Consensus 258 g~~~~a~~~~~~m~~~~ 274 (331)
|+.+.|..+|+-.....
T Consensus 485 gdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQP 501 (677)
T ss_pred hhHHHHHHHHHHHhcCc
Confidence 88888888888776543
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=6.6e-09 Score=88.62 Aligned_cols=251 Identities=14% Similarity=0.099 Sum_probs=184.9
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHH
Q 043124 51 CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEAL 127 (331)
Q Consensus 51 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 127 (331)
+.+.|++.+|.-.|+...+.. |-+...|.-|.......++-..|+..+++..+- |..+.-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456678888888888888775 447888888888888888888888888877653 5567777777888888888888
Q ss_pred HHHHHHHHcCCC--------CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHH
Q 043124 128 AMFDRMIYENVE--------PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199 (331)
Q Consensus 128 ~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 199 (331)
..++.=+....+ ++..+-.. ..+.......+..++|-++....+..+|+.++..|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543211 00000000 12233344556666777766566656788888989889999999999999
Q ss_pred HHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 043124 200 LIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 200 ~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 277 (331)
+|+. +.++| |...||.|...++...+.++|...|++++++.|........|+..|...|.+++|...|=+.+...-.-
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9996 56778 578899999999999999999999999999999999999999999999999999999887776543221
Q ss_pred CCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhc
Q 043124 278 RCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 321 (331)
. ...+..++ +..++..|+.....|+..
T Consensus 532 ~----------------~~~~~~~~-se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 532 R----------------NHNKAPMA-SENIWQTLRLALSAMNRS 558 (579)
T ss_pred c----------------ccccCCcc-hHHHHHHHHHHHHHcCCc
Confidence 1 00011122 567888888766666543
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.4e-08 Score=80.01 Aligned_cols=287 Identities=11% Similarity=0.019 Sum_probs=186.4
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHc--cCCchHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCC
Q 043124 30 NEMKNSGISPDQVTMATVLSACAH--LGALDLGREIHLYVMQ-IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN 106 (331)
Q Consensus 30 ~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 106 (331)
..|-...+.|+-.+....+.+++. .++...+.+.+-.+.. .-++.++.....+..++...|+.++|+..|++...-|
T Consensus 183 ~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d 262 (564)
T KOG1174|consen 183 LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN 262 (564)
T ss_pred hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC
Confidence 355555566666666666666543 3444445554433333 3366788899999999999999999999999887655
Q ss_pred hhh---HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHH
Q 043124 107 LFC---WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183 (331)
Q Consensus 107 ~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 183 (331)
+.+ .....-.+.+.|+.+....+...+.... .-+...|-.-+......++++.|..+-++.+... +-+...+-.
T Consensus 263 py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alil 339 (564)
T KOG1174|consen 263 PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALIL 339 (564)
T ss_pred hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHh
Confidence 443 3344556778899999998888887652 2344444444555667889999999988887221 223334433
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHhhcCCHHHHHH------------------------------
Q 043124 184 MVDLLSKAGLLEDALELIRSSK-FQP-NAVIWGALLGGCKLHRNLEIAHI------------------------------ 231 (331)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~------------------------------ 231 (331)
=..++...|+.++|.--|+... +.| +...|.-|+.+|...|++.+|.-
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh
Confidence 3456788999999988888643 454 67888889988888777765544
Q ss_pred ------HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCC-Cccce--E-----EeCCEEEEeecC
Q 043124 232 ------AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRC-PGSSW--I-----EMERKVYQFAAS 297 (331)
Q Consensus 232 ------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~--~-----~~~~~~~~~~~~ 297 (331)
++++.+.+.|....+...+...+...|+.++++.++++.... .+++ .+.-. + +.......+...
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444445566666666677888888999999999998887643 2220 00000 0 000011111112
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhc
Q 043124 298 DKSHPASDEIYSSLSKLDEQLKLA 321 (331)
Q Consensus 298 ~~~~p~~~~~~~~l~~l~~~~~~~ 321 (331)
-..+|++.....-+..+-+.+++.
T Consensus 498 Lr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 498 LRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HhcCccchHHHHHHHHHHhccCCC
Confidence 277888888888877776666543
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.1e-08 Score=83.66 Aligned_cols=227 Identities=13% Similarity=0.051 Sum_probs=152.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD-IDVYIGSALVDMY 86 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 86 (331)
..--+.+++...|+++.++ .+..+.. .|.......+...+....+-+.+..-+++....... .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3445678888888877544 4444433 666666666655554434444444444333323222 2333333344567
Q ss_pred HhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----ccCcHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT----HAGLVEEGR 162 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~ 162 (331)
...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++. ..+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHHHHHHHHHHhCchhHHHHH
Confidence 7789999999988876 566777788899999999999999999998763 34333 33444433 345789999
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhc
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQP-NAVIWGALLGGCKLHRNL-EIAHIAVNELMIL 239 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 239 (331)
.+|+++..+ ..+++.+.+.+..++...|++++|.+++.+ +...| +..+...++.+....|+. +.+.+++..+...
T Consensus 188 y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999843 467888999999999999999999999987 44445 466777777777777777 7788999999999
Q ss_pred CCCCcc
Q 043124 240 EPNNSG 245 (331)
Q Consensus 240 ~p~~~~ 245 (331)
.|+++.
T Consensus 266 ~p~h~~ 271 (290)
T PF04733_consen 266 NPNHPL 271 (290)
T ss_dssp TTTSHH
T ss_pred CCCChH
Confidence 998543
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=3.2e-07 Score=78.51 Aligned_cols=258 Identities=10% Similarity=-0.054 Sum_probs=132.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA----HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (331)
..+...|++++|..++++..+.. +.|...+.. ...+. ..+..+.+.+.++. .....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 34456677777777777776652 223333332 11222 23344444444433 1111122233444555667777
Q ss_pred CCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHHhccCcHHHHHH
Q 043124 90 GSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV-EPNG--VTFISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 90 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~ 163 (331)
|++++|.+.+++..+. +...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777766542 445667777777777888888877777766431 1222 234456667777788888888
Q ss_pred HHHhhhhcCCCCCcHhHH-H--HHHHHHHHcCCHHHHHHH--H-Hh---C-CCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 164 RFLSMTCGYSITPEVEHY-G--CMVDLLSKAGLLEDALEL--I-RS---S-KFQPNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~-~~---~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
++++........+..... + .++..+...|....+.+. + .. . ..............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777765221111111111 1 222222333322222221 1 11 1 00011111123444567777888888888
Q ss_pred HHHHhcC-C---C-----CcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 234 NELMILE-P---N-----NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 234 ~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
+.+.... . . ..........++...|++++|.+.+.+....+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7776511 1 1 12222334455667888888888877766543
No 77
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=3.7e-08 Score=91.92 Aligned_cols=214 Identities=11% Similarity=0.072 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhCCCHHHHHHHH
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------NLFCWNSIIEGLAVHGFAHEALAMF 130 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~ 130 (331)
.|.+ |+..... -|-+...|-..|......+++++|.+++++.... -.-.|.++++.....|.-+...++|
T Consensus 1443 saeD-ferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAED-FERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHH-HHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 4444 3333333 2445677888999999999999999999987642 2347888888888888899999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc
Q 043124 131 DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN 209 (331)
Q Consensus 131 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~ 209 (331)
+++.+.. -.-..|..|...|.+.+..++|.++|+.|.++++ .....|...+..+.+..+-++|..++.+ +..-|.
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 9998862 2345677899999999999999999999998776 5677899999999999999999999986 444443
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 210 ---AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 210 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
.......+..-.+.|+.+++..+|+..+.-.|.....|..+++.-.+.|+.+.++.+|++..+.++.+-
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 445555666677899999999999999999999999999999999999999999999999999988765
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.8e-06 Score=73.90 Aligned_cols=268 Identities=12% Similarity=0.006 Sum_probs=171.7
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHh-hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH-
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQV-TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA- 81 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 81 (331)
....|..+...+...|+.+.+...+....+... .++.. ........+...|++++|..++++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 345577777778888889998777777665422 22221 22233445677899999999999998874 334444442
Q ss_pred --HHHHHHhhCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 043124 82 --LVDMYAKCGSLDRSLLVFFKLREKN---LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156 (331)
Q Consensus 82 --l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 156 (331)
+.......|..+.+.+.+......+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222223456666666666533222 2345566678899999999999999999875 455677788888999999
Q ss_pred cHHHHHHHHHhhhhcCCCCCcH--hHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC--c-HHHH-H--HHHHHHhhcCCHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEV--EHYGCMVDLLSKAGLLEDALELIRSSK-FQP--N-AVIW-G--ALLGGCKLHRNLE 227 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~~~~~ 227 (331)
++++|...+++........++. ..|..+...+...|++++|..++++.. ..| . .... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999988432222332 345578888999999999999999852 223 1 2111 1 2233344444433
Q ss_pred HHHHH--H-HHHHhcCCCCcchH--HHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 228 IAHIA--V-NELMILEPNNSGYC--TLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 228 ~a~~~--~-~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.+.++ + .......|.....+ .....++...|+.+.|..+++.+....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33333 1 11111112222222 356778889999999999999987643
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=2.1e-06 Score=69.34 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=120.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHccCCchHHHHHHHHHHHhCCCCch-hHHHHHHHHH
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATV---LSACAHLGALDLGREIHLYVMQIGFDIDV-YIGSALVDMY 86 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 86 (331)
-|.+.+...|++..|+.-|....+. |+..|..+ ...|...|+...|+.-++..++. +||- ..-..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3556677788888888888887754 33444443 34667778888888888887775 4442 2222345567
Q ss_pred HhhCCHHHHHHHHhhcCCCCh------h------------hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNL------F------------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~------~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 148 (331)
.+.|.+++|..=|+.+.+.++ . .....+..+...|+...|++....+++.. +-+...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 788888888888887764322 1 12223444556788888888888887763 5566677777
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN 209 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~ 209 (331)
..+|...|++..|+.-++... +.. .-++...--+...+...|+.+.++..+++ +.+.||
T Consensus 196 akc~i~~~e~k~AI~Dlk~as-kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQAS-KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHH-hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 777788888887777666665 222 12233333455566666666666665554 334444
No 80
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=1.9e-06 Score=72.39 Aligned_cols=256 Identities=11% Similarity=0.026 Sum_probs=190.6
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 043124 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96 (331)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 96 (331)
-.++++..|..+|+..+.... -+...|.--+..-.+...+..|..+|+.+... +|.-...|-..+.+--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345677889999999987653 35666666677777888999999999999887 3333445666677777889999999
Q ss_pred HHHhhcC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCC
Q 043124 97 LVFFKLR--EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI 174 (331)
Q Consensus 97 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (331)
++|++-. +|+..+|++.|..-.+-+.++.|..+|++.+-. .|++.+|......-.+.|+...|..+|....+..|-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9999765 689999999999999999999999999998874 599999999998889999999999999998854432
Q ss_pred C-CcHhHHHHHHHHHHHcCCHHHHHHHHHh----CCCCCcHHHHHHHHHHHhhcCCH---HHHHH-----HHHHHHhcCC
Q 043124 175 T-PEVEHYGCMVDLLSKAGLLEDALELIRS----SKFQPNAVIWGALLGGCKLHRNL---EIAHI-----AVNELMILEP 241 (331)
Q Consensus 175 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~---~~a~~-----~~~~~~~~~p 241 (331)
. .+...+.+....-.+++.++.|.-+++- ++-.-....|..+...--+-|+. +.+.- -++..++.+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 1 1233445555555567888888888763 33222244444444433344443 43332 3445566889
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 043124 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 277 (331)
-+..+|...++.-...|+.+...++|++.... ++|
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 99999999999999999999999999998754 444
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=3.4e-07 Score=80.58 Aligned_cols=225 Identities=11% Similarity=0.062 Sum_probs=158.3
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCCh--hh-HHHHHHHHHh----
Q 043124 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL--FC-WNSIIEGLAV---- 119 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~-~~~li~~~~~---- 119 (331)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.+.|+ .. |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 344567889999999999876555 455677788889999999999999999999986543 34 4445555422
Q ss_pred -CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH-HHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 120 -HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV-EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 120 -~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+. ..|+++ +++.|-..|....+..-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l-~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQL-RKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHH-hcCCch---HHHHHHHHHcChhHHHHH
Confidence 235778888999887653 4444433333233332333 34556666666 557654 566666666655544444
Q ss_pred HHHHHh----CC-------------CCCcHH--HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 198 LELIRS----SK-------------FQPNAV--IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 198 ~~~~~~----~~-------------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
.+++.. +. -.|+.. ++.-+...|-..|++++|.++++++++..|..+..|..-++.|-+.|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 444432 11 124443 34555666889999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhcCCCCC
Q 043124 259 RWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 259 ~~~~a~~~~~~m~~~~~~~~ 278 (331)
++++|.+.++..+.......
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADR 262 (517)
T ss_pred CHHHHHHHHHHHHhCChhhH
Confidence 99999999999998776554
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.2e-07 Score=71.88 Aligned_cols=256 Identities=11% Similarity=0.028 Sum_probs=171.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH-HHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA-LVDMYA 87 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 87 (331)
|.+++..+.+..++..|++++..-.+.. +.+....+.|..+|....++..|-..++++-..- |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5566666777777888888877766653 2266677777777777777777777777765542 33222221 123334
Q ss_pred hhCCHHHHHHHHhhcCC-----------------------------------CChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 043124 88 KCGSLDRSLLVFFKLRE-----------------------------------KNLFCWNSIIEGLAVHGFAHEALAMFDR 132 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~-----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 132 (331)
+.+.+..|+.+...|.. .+..+.+.......+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 44555555554444432 2344555556667789999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCC-------------Cc--------HhHHHHHHHH----
Q 043124 133 MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT-------------PE--------VEHYGCMVDL---- 187 (331)
Q Consensus 133 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~--------~~~~~~l~~~---- 187 (331)
..+-+---....|+.. -++.+.++.+.|.+...++. ..|+. || ..+-+.++.+
T Consensus 170 AlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 9886533456678744 45677899999999988887 33432 11 1123344443
Q ss_pred ---HHHcCCHHHHHHHHHhCC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 043124 188 ---LSKAGLLEDALELIRSSK----FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRW 260 (331)
Q Consensus 188 ---~~~~~~~~~a~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 260 (331)
+.+.|+++.|.+-+..|+ -..|+.|.+.+.-. -..+++....+-++-++++.|-...+|..++-.|++..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 457789999999988886 33566776655432 2345677777778888888998888999999999999999
Q ss_pred hHHHHHHHHH
Q 043124 261 AEVTKIRVAM 270 (331)
Q Consensus 261 ~~a~~~~~~m 270 (331)
+.|.+++.+-
T Consensus 327 ~lAADvLAEn 336 (459)
T KOG4340|consen 327 DLAADVLAEN 336 (459)
T ss_pred hHHHHHHhhC
Confidence 9998888763
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.2e-07 Score=81.25 Aligned_cols=250 Identities=10% Similarity=0.002 Sum_probs=187.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
..-+.+.|++.+|.-+|+...+.+ +-+...|..|.......++-..|+..+.+.++.. +.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678999999999999999885 4478899999999999999999999999999875 44778888899999999999
Q ss_pred HHHHHHHhhcCCCCh-hhHHHHH---------HHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 93 DRSLLVFFKLREKNL-FCWNSII---------EGLAVHGFAHEALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 93 ~~a~~~~~~~~~~~~-~~~~~li---------~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
..|.+.++.-..... ..|.... ..+.....+....++|-++.. .+..+|......|.-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998875532100 0000000 122222334556666666554 34346777778888889999999999
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMIL 239 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 239 (331)
...|+...... +-|..+||.|.-.++...+.++|+.-|++ +.++|+ +.....|.-+|...|.+++|.+.|-.++.+
T Consensus 450 iDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999998321 34588999999999999999999999987 468887 566677888899999999999999999874
Q ss_pred CCC-----C-----cchHHHHHHHHHhcCCchHHHHH
Q 043124 240 EPN-----N-----SGYCTLLLNMYAEVSRWAEVTKI 266 (331)
Q Consensus 240 ~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 266 (331)
.+. . ..+|..|=.++.-.++.|.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 433 1 24666666667777776655443
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.95 E-value=2.9e-07 Score=73.89 Aligned_cols=181 Identities=11% Similarity=-0.045 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH--HHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NL---FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG--VTFI 146 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 146 (331)
....+..++..+.+.|++++|...|+++... +. .++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555666666677777777766655432 11 34566666777777777777777777664311111 1333
Q ss_pred HHHHHHhcc--------CcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHH
Q 043124 147 SVLSACTHA--------GLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALL 217 (331)
Q Consensus 147 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~ 217 (331)
.+..++... |+.+.|.+.|+.+.+. .|+ ...+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 333344333 6788888888888733 233 222222211100 11100 00112455
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 218 GGCKLHRNLEIAHIAVNELMILEPNN---SGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..+...|++++|...+++++...|++ ...+..++.++.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56889999999999999999976654 467788999999999999999999888654
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=1.2e-06 Score=76.25 Aligned_cols=267 Identities=13% Similarity=0.102 Sum_probs=197.4
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
+.....|-.++++| ..+++...+.+.+.+.+. .+-...+.....-.+...|+-++|........+..+. +.+.|+.+
T Consensus 5 ~KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~ 81 (700)
T KOG1156|consen 5 PKENALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVL 81 (700)
T ss_pred hHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHH
Confidence 33445567777766 667899999999888884 3445567766666777889999999998888776543 67889999
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
.-.+....++++|.+.|..... .|...|.-+...-.+.|+++..........+.. +.....|..+..+..-.|+..
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 9889999999999999987653 466788888777888899999999999888863 445667778888888899999
Q ss_pred HHHHHHHhhhhcCCCCCcHhHHHHHHH------HHHHcCCHHHHHHHHHhCC-CCCcHHHH-HHHHHHHhhcCCHHHHHH
Q 043124 160 EGRRRFLSMTCGYSITPEVEHYGCMVD------LLSKAGLLEDALELIRSSK-FQPNAVIW-GALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~a~~ 231 (331)
.|..+++.......-.|+...+..... ...+.|.+++|.+.+.... ...|...+ ..-...+.+.+++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999999854433566555544332 3456788888888776543 11232222 223334788999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHH-hcCCchHHHHHHHHHHhc
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYA-EVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 273 (331)
+++.++...|++..+|..+..++. -.+..+....+|....+.
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 999999999999999988888886 333333333666665543
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=4.8e-06 Score=73.96 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=41.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (331)
+.--|+..++.+.|.+...+..+.+-.-+...+..+...+...+++.+|+.+.+...+..+
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 3334566677788888887777775556677777777777777777777777776665443
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.87 E-value=1.2e-06 Score=81.15 Aligned_cols=229 Identities=10% Similarity=0.094 Sum_probs=138.2
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQ-VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (331)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ .+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 455667777888887888888888887766654 3333 3444444456666665555444 22222
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
.....++.-+..+...|.. .+..++..++.+|-+.|+.++|..+|+++++.+ +-|....|.+...++.. +.+
T Consensus 93 ----~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 93 ----FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ----cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 1111111111111111111 122366778888888888888888888888876 55677888888888888 888
Q ss_pred HHHHHHHhhhhcCCCCCcHhHHHHHHHH---HH--HcCCHHHHHHHHHh----CCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 043124 160 EGRRRFLSMTCGYSITPEVEHYGCMVDL---LS--KAGLLEDALELIRS----SKFQPNAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~~~~~~a~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
+|.+++.+....+ .+..-|+.+... ++ ...+++.-..+.+. .+..--+.++..+-..|...++++++.
T Consensus 167 KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 167 KAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 8888888776321 111111111111 11 11222222222222 222333455566667788899999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 231 IAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 231 ~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
.+++.+++.+|.+..+...++.+|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999999988888888886
No 88
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=3.3e-06 Score=70.25 Aligned_cols=217 Identities=12% Similarity=0.017 Sum_probs=116.1
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC-CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCH--H
Q 043124 51 CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-SLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFA--H 124 (331)
Q Consensus 51 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~--~ 124 (331)
+...+..++|+...+++++.. +-+..+|+....++...| ++++++..++++.+. +..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 334455555666655555543 223344444444444444 355566655554432 233444444344444432 4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc---CCH----HHH
Q 043124 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA---GLL----EDA 197 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a 197 (331)
+++..++++.+.+ +-+..+|+....++...|++++++..++++.+.. +.+...|+.....+.+. |.. ++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 5566666666553 3345556555555666666666666666666321 22344444444333332 112 344
Q ss_pred HHHHH-hCCCCC-cHHHHHHHHHHHhhc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------------
Q 043124 198 LELIR-SSKFQP-NAVIWGALLGGCKLH----RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS------------- 258 (331)
Q Consensus 198 ~~~~~-~~~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 258 (331)
+++.. .+...| |...|+.+...+... ++..+|.+.+.+.....|.++.+...|+..|....
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 44443 344445 355566555555542 34456777777777777887777788888887632
Q ss_pred -----CchHHHHHHHHHH
Q 043124 259 -----RWAEVTKIRVAMK 271 (331)
Q Consensus 259 -----~~~~a~~~~~~m~ 271 (331)
..++|..+++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 2366888887773
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=1.2e-06 Score=80.05 Aligned_cols=128 Identities=13% Similarity=-0.043 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHH
Q 043124 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALL 217 (331)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~ 217 (331)
+...+..|.....+.|..++|..+|+... .+.|+ ......+...+.+.+++++|+..+++. ...|+ ......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34444444444444555555555554444 11332 333334444444455555554444432 22332 22333333
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
.++.+.|++++|..+|+++...+|++...+..+..++.+.|+.++|...|++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444555555555555544444444444444555555555555555554443
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=2.6e-07 Score=67.70 Aligned_cols=89 Identities=10% Similarity=-0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 043124 183 CMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRW 260 (331)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 260 (331)
.+...+...|++++|...|+.. ...| +...+..+..++...|++++|...|++++..+|+++..+..++.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3455555666666666666542 2333 3455555555566666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHH
Q 043124 261 AEVTKIRVAMK 271 (331)
Q Consensus 261 ~~a~~~~~~m~ 271 (331)
++|...|++..
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=5e-07 Score=72.50 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=43.5
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
.+...+.+.|++++|...++...+.+.-.| ....+..+..++...|++++|...++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667888888888888888874432222 35677788888888899888888887654
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=5.9e-07 Score=79.07 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=124.2
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 73 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
+|-...-..+...+.+.|-...|..+|+++. .|..+|.+|...|+..+|..+..+..+ -+||+..|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 4444445567777888888888888888764 577788888888888888888877776 367777777776665
Q ss_pred hccCcHHHHHHHHHhhhhc--C-----------------------CC-CCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CC
Q 043124 153 THAGLVEEGRRRFLSMTCG--Y-----------------------SI-TPEVEHYGCMVDLLSKAGLLEDALELIRS-SK 205 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~--~-----------------------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~ 205 (331)
....-+++|..+.+....+ . .+ +....+|-.+..+..+.++++.|.+.|.. ..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 5555555555555443311 0 00 11233444445555566666666666654 33
Q ss_pred CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 206 FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 206 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..|| ...||.+-.+|.+.++..+|...+.++++.+-.+..+|.+.+....+.|.+++|.+.+.++.+.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4554 5566777666777777777777777776655555666666666666777777777776666544
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=4.4e-07 Score=70.29 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=74.2
Q ss_pred cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHH-HhhcCC--HHHH
Q 043124 155 AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGG-CKLHRN--LEIA 229 (331)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a 229 (331)
.++.+++...++...+.. +.+...|..+...|...|++++|...+++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655222 445666666777777777777777777653 2344 35555555554 345555 4777
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.++++++++.+|++...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777654
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=2.2e-06 Score=76.06 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=105.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhh
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKL 222 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~ 222 (331)
+......+.+.+..++|...+.+...- .+.....|......+...|+.++|.+.|.. .-+.|+ +....++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334556677888889998888887722 233466777777788899999999998875 456775 7788899999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 223 HRNLEIAHI--AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 223 ~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.|+...|.. ++..+++++|.+...|..|+..+.+.|+.+.|.+.|....+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999888888 999999999999999999999999999999999999987654
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=6.8e-09 Score=54.93 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=21.5
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhhc
Q 043124 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 102 (331)
|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=5.1e-07 Score=79.45 Aligned_cols=219 Identities=15% Similarity=0.090 Sum_probs=133.4
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCH
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFA 123 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 123 (331)
|..++.+|...|+..+|..+..+-.+ -+|+...|..+++.....--+++|.++++....+ +-..+.....+.+++
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhH
Confidence 33333344444444444444333333 1334444444444433333344444444333222 111112222345778
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 043124 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIR 202 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 202 (331)
+++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|.... ...|+ ...||.+-.+|.+.++-.+|...++
T Consensus 502 s~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 502 SEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 88888888776664 4556777777777889999999999999988 23555 7899999999999999999999998
Q ss_pred hC-CC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCC---chHHHHHHHHHH
Q 043124 203 SS-KF-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLLLNMYAEVSR---WAEVTKIRVAMK 271 (331)
Q Consensus 203 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~ 271 (331)
+. +. .-+...|...+....+.|.+++|.+.+.++.... -.+..+-..++....+.-. -+++........
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~k 653 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLK 653 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHH
Confidence 74 32 2345667777778889999999999999998722 2234444555555544332 344444444433
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=4.2e-06 Score=78.86 Aligned_cols=241 Identities=13% Similarity=0.089 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhhCCHHHHHHHH
Q 043124 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI-GFDI---DVYIGSALVDMYAKCGSLDRSLLVF 99 (331)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 99 (331)
.|.+.-+..+.. +.+...|-.-|....+.++.+.|+++.++++.. ++.- -..+|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 444443333332 445667888888889999999999999998875 2221 2347778888877888888899999
Q ss_pred hhcCCC-C-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc
Q 043124 100 FKLREK-N-LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177 (331)
Q Consensus 100 ~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (331)
++..+- | -..|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+...-.-.
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 998764 3 357889999999999999999999999876 4467788999999999999999999999998832111113
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSSK-FQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTLLLNM 253 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~ 253 (331)
.......+..-.+.|+.+++..+|+..- ..| -...|+..+..-.++|+.+.+..+|++++. +.|....++.-.---
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 4555566677789999999999998742 334 467899999999999999999999999998 446666555444444
Q ss_pred HH-hcCCchHHHHHH
Q 043124 254 YA-EVSRWAEVTKIR 267 (331)
Q Consensus 254 ~~-~~g~~~~a~~~~ 267 (331)
|. ..|+-+.+..+=
T Consensus 1680 yEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHhcCchhhHHHHH
Confidence 44 446655444443
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=6.1e-09 Score=55.11 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=28.5
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMK 33 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 33 (331)
+||+.+||+||.+|++.|++++|.++|++|.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999884
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=6.4e-06 Score=79.56 Aligned_cols=263 Identities=13% Similarity=0.008 Sum_probs=175.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCchHHHHHHHHHHHhCC---CC--chhHHHHHH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQ----VTMATVLSACAHLGALDLGREIHLYVMQIGF---DI--DVYIGSALV 83 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 83 (331)
...+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++.....- .+ ...++..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34566789999999999998764212222 2345566677889999999999988875311 11 123555667
Q ss_pred HHHHhhCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC--cHHHHHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLRE-------K----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--VEP--NGVTFISV 148 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l 148 (331)
..+...|++++|...+++... + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 788899999999998876542 1 11234556667788899999999998876531 112 23344456
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CcH----HHHHHHH
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY-----GCMVDLLSKAGLLEDALELIRSSKF-Q-PNA----VIWGALL 217 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~-~-p~~----~~~~~l~ 217 (331)
...+...|+.+.|...+...............+ ...+..+...|+.+.|...+..... . ... ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667788999999999988875311111111111 1122445568999999999876431 1 111 1134566
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 043124 218 GGCKLHRNLEIAHIAVNELMILE------PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 275 (331)
.++...|+.++|...++++.... +........+..++.+.|+.++|...+.+..+..-
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 66888999999999999998732 12233456678899999999999999999887553
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=3.5e-06 Score=65.26 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=111.9
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++..+.+ +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777788777665554433221 01223566788888888877764 667888888889999999999999
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLL-SKAGL--LEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
..|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...|++++
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888322 33577777777764 66676 58999999874 4556 46777777778899999999999999999
Q ss_pred hcCCCCcchHH
Q 043124 238 ILEPNNSGYCT 248 (331)
Q Consensus 238 ~~~p~~~~~~~ 248 (331)
+..|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 97766555533
No 101
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=3e-05 Score=64.61 Aligned_cols=236 Identities=13% Similarity=0.067 Sum_probs=162.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
+++.+-..+...++.++|+.++.++.+.. +-+..+|+.-..++...| ++++++..++++.+.. +.+..+|+....++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45566666777889999999999999864 224456666666666677 6799999999999885 34666777666666
Q ss_pred HhhCCH--HHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---Cc-
Q 043124 87 AKCGSL--DRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA---GL- 157 (331)
Q Consensus 87 ~~~g~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~- 157 (331)
.+.|+. +++..+++++.+ .|..+|+....++...|+++++++.++++++.+ +-+...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 666763 677888877764 466789999999999999999999999999986 34566666555444443 22
Q ss_pred ---HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcC----
Q 043124 158 ---VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA----GLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHR---- 224 (331)
Q Consensus 158 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---- 224 (331)
.+.+..+...+.... +-+...|+.+...+... +...+|.+++.+. ...| +......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 246677776666232 44577888777777763 3456687777663 3344 4666777777776532
Q ss_pred --------------CHHHHHHHHHHHHhcCCCCcchHH
Q 043124 225 --------------NLEIAHIAVNELMILEPNNSGYCT 248 (331)
Q Consensus 225 --------------~~~~a~~~~~~~~~~~p~~~~~~~ 248 (331)
..++|.++++.+.+.+|-...+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 235667777666545555444443
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.3e-05 Score=62.56 Aligned_cols=151 Identities=18% Similarity=0.064 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 156 (331)
..+-..+.-.|+-+....+...... .|....+..+....+.|++.+|...+++..... ++|..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344444445555554444444321 123334445555555555555555555554442 445555555555555555
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ--PNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
+.+.|..-|.+..+-. .-+...++.+...+.-.|+.+.|..++...... -|...-..+.......|+++.|+++.
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555555221 112334455555555555555555555542211 13444444544555555555555543
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.2e-05 Score=62.71 Aligned_cols=250 Identities=12% Similarity=0.035 Sum_probs=164.8
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
|+-..|| ++-+.-.|++..++..-....... -+...-..+.++|...|.+..... ++.... .|.......+.
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLA 79 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHH
Confidence 4444555 677777888888877655554432 344445556777877787754433 333332 33444444444
Q ss_pred HHHHhhCCHHHHH-HHHhhcCCC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 043124 84 DMYAKCGSLDRSL-LVFFKLREK----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158 (331)
Q Consensus 84 ~~~~~~g~~~~a~-~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 158 (331)
.....-++.+.-. ++.+.+..+ +......-...|+..|++++|++...... +......=+..+.+..+.
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 4443344433322 333444333 22333444567889999999999887721 222233333456778899
Q ss_pred HHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH----cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 043124 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK----AGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
+.|.+.++.|. +- -+..+.+.|..++.+ .+.+.+|.-+|+++. ..|+..+.+....++...|++++|+.+
T Consensus 154 d~A~~~lk~mq-~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQ-QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHH-cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 99999999998 21 234566666666654 567889999999874 678999999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 043124 233 VNELMILEPNNSGYCTLLLNMYAEVSRWAEV-TKIRVAMK 271 (331)
Q Consensus 233 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 271 (331)
++.++..+++++.+...++..-...|.-.++ .+.+.+++
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999999988888888888877554 34555554
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.5e-05 Score=65.33 Aligned_cols=160 Identities=10% Similarity=0.004 Sum_probs=100.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHH----
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV---- 185 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---- 185 (331)
.-.++++..+..++..|.+.+....+.. -+..-++....++...|.+......-....+. |-. ...-|+.+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHH-HHHHHHHHHHHHH
Confidence 3445555666666777777777766653 34444455556666666665555444443321 110 112222222
Q ss_pred ---HHHHHcCCHHHHHHHHHhCC---CCCcHHH-------------------------HHHHHHHHhhcCCHHHHHHHHH
Q 043124 186 ---DLLSKAGLLEDALELIRSSK---FQPNAVI-------------------------WGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 186 ---~~~~~~~~~~~a~~~~~~~~---~~p~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
.+|.+.++++.|+..+.+.- ..|+..+ ...-...+.+.|++..|.+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34555667777777765421 1122211 1111334778999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 235 ELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 235 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+++..+|++...|....-+|.+.|.+..|+.-.+.-.+.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999877776654
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=5.4e-06 Score=64.53 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=129.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHH
Q 043124 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185 (331)
Q Consensus 106 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 185 (331)
|... ..+-..+...|+-+....+....... .+-+.......+....+.|++..|...+++... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 4445 66777788888888888888776543 244555566688888999999999999999883 3377899999999
Q ss_pred HHHHHcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 043124 186 DLLSKAGLLEDALELIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 263 (331)
-+|-+.|+++.|..-|.+ ..+.| +....+.+...+.-.|+.+.|..++.......+.+..+-..|..+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999888876 34444 4667788888889999999999999999988888888889999999999999999
Q ss_pred HHHHHH
Q 043124 264 TKIRVA 269 (331)
Q Consensus 264 ~~~~~~ 269 (331)
.++...
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887655
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=8.7e-07 Score=64.95 Aligned_cols=122 Identities=7% Similarity=-0.021 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 043124 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KF 206 (331)
Q Consensus 128 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~ 206 (331)
.+|++..+. .|+. +......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555553 3443 4456677788889999999888887321 445778888888888899999999888863 34
Q ss_pred CC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 207 QP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 207 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
.| +...+..+..++...|+.++|...++++++..|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45 57777888888888999999999999999999988888766655543
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.0001 Score=63.32 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC---CCC-cHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK---FQP-NAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
.+....+++++.....+.|+ .+|..++..-.+..-++.|..+|.+.+ ..+ ++..+.+++.-++ .+|.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44555566666644555555 467778888888899999999998764 334 6777777777665 67899999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 234 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+-.++..++++.+-...+.-+...|+-..+..+|++....++.++
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 999999999888878888999999999999999999998866655
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.6e-05 Score=61.64 Aligned_cols=191 Identities=15% Similarity=0.111 Sum_probs=136.6
Q ss_pred ccCCchHHHHHHHHHHHh---C-CCCchh-HHHHHHHHHHhhCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHH
Q 043124 53 HLGALDLGREIHLYVMQI---G-FDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGFAH 124 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~ 124 (331)
...+.++..+++.+++.. | ..++.. +|..++-+....|+.+-|..+++.+...=+ .+--.-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 345677777777777542 3 344443 344556666778888888888887764312 12222222345678999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
+|+++|+.+.+.+ |.|..++---+...-..|..-+|++-++...+. +..|...|.-+...|...|++++|.-+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999886 566777776666777788888999999988844 4778999999999999999999999999985
Q ss_pred C-CCCc-HHHHHHHHHHHh---hcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 205 K-FQPN-AVIWGALLGGCK---LHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 205 ~-~~p~-~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
- .+|. ...+..+...+. ...+++.+.+++.+++++.|.+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 3 5664 555555665533 3446788999999999998854433
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=4.5e-05 Score=66.76 Aligned_cols=271 Identities=13% Similarity=0.128 Sum_probs=156.0
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
..+.++|+.+.-.+....++++|+.+|......+ +.|...+.-+.-.-++.|+++.......+..+.. +.....|..+
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHH
Confidence 3567889999999999999999999999988764 3344444433333334444444444443333331 1122333333
Q ss_pred HHHHH------------------------------------------hhCCHHHHHHHHhhcCCC---ChhhHHHHHHHH
Q 043124 83 VDMYA------------------------------------------KCGSLDRSLLVFFKLREK---NLFCWNSIIEGL 117 (331)
Q Consensus 83 ~~~~~------------------------------------------~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~ 117 (331)
..++. +.|..++|.+.+...... ....-..-...+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 33333 444455555444433321 112233445567
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhccCcHHHHH-HHHHhhhhcCC--CCCc--------HhHHHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISV-LSACTHAGLVEEGR-RRFLSMTCGYS--ITPE--------VEHYGCMV 185 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~-~~~~~~~~~~~--~~~~--------~~~~~~l~ 185 (331)
.+.+++++|..++..++..+ ||...|... ..++.+-.+.-++. .+|....+... -.|- -.-+...+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 77888888888888888763 565555544 44443333333343 66666553221 0110 00111111
Q ss_pred HHHH----HcC-------------CHHHHHHHHHh--------CC-------------CCCcHHH--HHHHHHHHhhcCC
Q 043124 186 DLLS----KAG-------------LLEDALELIRS--------SK-------------FQPNAVI--WGALLGGCKLHRN 225 (331)
Q Consensus 186 ~~~~----~~~-------------~~~~a~~~~~~--------~~-------------~~p~~~~--~~~l~~~~~~~~~ 225 (331)
+-|. +.| +..++- ++++ +. -.|.... +.-++..+-..|+
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 1111 111 111111 2221 11 1344443 4455566889999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 226 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
++.|..+++.++...|.-+..|..=.+++...|+.++|...+++..+.+....
T Consensus 387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 99999999999999999888888889999999999999999999987665433
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=1e-05 Score=74.12 Aligned_cols=144 Identities=9% Similarity=-0.085 Sum_probs=118.5
Q ss_pred CCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHH
Q 043124 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSI 113 (331)
Q Consensus 37 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l 113 (331)
...+...+..|..+..+.|.+++|..+++.+.+.. +.+......+..++.+.+++++|+..+++.... +....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45567888899999999999999999999999874 446778888999999999999999999988764 44678888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHH
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 184 (331)
..++.+.|++++|.++|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHH
Confidence 899999999999999999999843 4457888889999999999999999999988433 3444454443
No 111
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=2.6e-06 Score=72.29 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 157 (331)
....|+..+...++++.|.++|+++.+.++.....++..+...++..+|.+++++..... +-+......-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566677778899999999999988888888888888888888889999999888663 4566666667777889999
Q ss_pred HHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043124 158 VEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208 (331)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p 208 (331)
.+.|..+.+++.+ ..|+ -.+|..|..+|...|+++.|+..++.+++.|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999882 2454 6689999999999999999999888876443
No 112
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.62 E-value=0.00013 Score=64.02 Aligned_cols=261 Identities=14% Similarity=0.196 Sum_probs=162.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNS-GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
.|-.-+....++|+.......|+..+.. -+......|...+......+-++.+..+++..++.. | ..-...+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHH
Confidence 3445555566677777777777766554 222233456666666666677777777777766642 2 2245566677
Q ss_pred HhhCCHHHHHHHHhhcCCC--------------------------------C----------------hhhHHHHHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREK--------------------------------N----------------LFCWNSIIEGLA 118 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~--------------------------------~----------------~~~~~~li~~~~ 118 (331)
++.+++++|-+.+..+... | ...|+.|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 7777777777666555410 0 125778888888
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh---------------------------------------------
Q 043124 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT--------------------------------------------- 153 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--------------------------------------------- 153 (331)
+.|.+++|..+|++.... ..+..-|..+..+|+
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 888888888888876543 112222222222221
Q ss_pred ---------------------ccCcHHHHHHHHHhhhhcCCCCCc------HhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 043124 154 ---------------------HAGLVEEGRRRFLSMTCGYSITPE------VEHYGCMVDLLSKAGLLEDALELIRSSKF 206 (331)
Q Consensus 154 ---------------------~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (331)
..|+..+-...|.+..+ .+.|. ...|..+.+.|-..|+++.|..+|++...
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11445555555655552 22332 34677888889999999999999987542
Q ss_pred CC--c----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC--CC----------------CcchHHHHHHHHHhcCCchH
Q 043124 207 QP--N----AVIWGALLGGCKLHRNLEIAHIAVNELMILE--PN----------------NSGYCTLLLNMYAEVSRWAE 262 (331)
Q Consensus 207 ~p--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~----------------~~~~~~~l~~~~~~~g~~~~ 262 (331)
.| . ..+|..-...-.++.+++.|.++++++...- |. +...|..+++.-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 22 1 2345555555667888999999988886521 11 23445666666677788888
Q ss_pred HHHHHHHHHhcCCC
Q 043124 263 VTKIRVAMKELGIE 276 (331)
Q Consensus 263 a~~~~~~m~~~~~~ 276 (331)
...+++++.+..+-
T Consensus 496 tk~vYdriidLria 509 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888876653
No 113
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=9.8e-06 Score=65.86 Aligned_cols=212 Identities=11% Similarity=-0.007 Sum_probs=89.1
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC-------HHHHH
Q 043124 55 GALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF-------AHEAL 127 (331)
Q Consensus 55 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~ 127 (331)
++-+.|++++--+.+. -| .....|+-.|.+.+++.+|..+.+++...++.-|-.-.-.++..|+ ..-|.
T Consensus 268 rngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred eCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 3445555555444432 12 2223344455566666666666555544444333333333333332 22333
Q ss_pred HHHHHHHHcCCCCc-HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 043124 128 AMFDRMIYENVEPN-GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK- 205 (331)
Q Consensus 128 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 205 (331)
+.|+-.-+.+..-| ..--.++...+.-..++++.+.+++.+. .+=..-|...+| +.++++..|++.+|.++|-.+.
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC
Confidence 33333323222211 1112233333444445555555555555 222222333333 4555555555555555554432
Q ss_pred --CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 206 --FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS-GYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 206 --~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
++.+..-...|.++|.+.+.++.|..++-++ ..|.+. .....+..-|.+.+.+--|.+.|+.+...+
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 1222222233344455555555555444222 112211 112223344555555555555555554433
No 114
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.58 E-value=1.2e-07 Score=50.54 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISP 39 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 39 (331)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3688999999999999999999999998888877
No 115
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.1e-07 Score=50.96 Aligned_cols=35 Identities=34% Similarity=0.630 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQ 41 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 41 (331)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=2.1e-05 Score=73.11 Aligned_cols=203 Identities=10% Similarity=0.049 Sum_probs=149.3
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAV 119 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 119 (331)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++.-+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 45678899999999999999999999777763 33445555555577777776665443 34555556
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHH
Q 043124 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 199 (331)
..++.-+..+...|... .-+...+-.+..+|-+.|+.++|..+|+++. +.. +-++...|.+...|... ++++|.+
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLV-KAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 66776666666677664 3455677789999999999999999999999 444 55688999999999999 9999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchH--------------------HHHHHHHHhcCC
Q 043124 200 LIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC--------------------TLLLNMYAEVSR 259 (331)
Q Consensus 200 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~--------------------~~l~~~~~~~g~ 259 (331)
++.+.- ..+...+++..+.++|.++....|++...+ ..+-..|...++
T Consensus 171 m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 171 YLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 887642 125556677777777777777777655443 333456667778
Q ss_pred chHHHHHHHHHHhc
Q 043124 260 WAEVTKIRVAMKEL 273 (331)
Q Consensus 260 ~~~a~~~~~~m~~~ 273 (331)
|+++..+++.+.+.
T Consensus 239 ~~~~i~iLK~iL~~ 252 (906)
T PRK14720 239 WDEVIYILKKILEH 252 (906)
T ss_pred hhHHHHHHHHHHhc
Confidence 88999999888754
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=2.8e-05 Score=69.95 Aligned_cols=211 Identities=13% Similarity=0.080 Sum_probs=138.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCC---------CCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSG---------ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 75 (331)
+-..|..|.++|.+.++.+-|.-++-.|.... -.|+ .+=..........|.+++|+.++.+-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 34568888888888888877777766664321 1222 22222233345667888888888776653
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHH----------HHcC-------
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREK-NLFCWNSIIEGLAVHGFAHEALAMFDRM----------IYEN------- 137 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m----------~~~~------- 137 (331)
..|=..|...|.|++|.++-+.--+- =-.||......+-..++.+.|++.|++. +...
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 23344566778888888776543322 1246777777777788888888888763 2111
Q ss_pred --CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHH
Q 043124 138 --VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215 (331)
Q Consensus 138 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ 215 (331)
-..|...|.-....+-..|+.+.|+.+|...+ + |-++++..|-.|+.++|-.+-++.+ |......
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYh 972 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYH 972 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHH
Confidence 11244445555555667788888888888777 2 4556777777888888888887776 5566777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHh
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
|.+.|-..|++.+|..+|-++..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Confidence 88888888888888888877754
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.3e-05 Score=67.85 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=50.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 93 (331)
..+...+++++|.+.-.++...+ +-|...+..-+-+..+.+.+++|+.+.+.-.. ...+...+---.-+..+.+..|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 33444455555555555555443 22333344444444555555555433221100 0000000001122333445555
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
+|...++.....+..+...-...+.+.|++++|+.+|+.+.+.
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5555555333333334444444455555555555555555444
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.00022 Score=69.09 Aligned_cols=263 Identities=12% Similarity=0.027 Sum_probs=168.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCC------CCC--HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc----hhH
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGI------SPD--QVTMATVLSACAHLGALDLGREIHLYVMQIGFDID----VYI 78 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 78 (331)
.....+...|+++++...+......-- .+. ......+...+...|+++.|...+++..+.-...+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344556678999999999887754311 111 12222334455678999999999998876421112 124
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-cH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLRE-------K--NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVE--P-NG 142 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~ 142 (331)
.+.+...+...|++++|...+++... + -..++..+...+...|++++|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45666777889999999998877652 1 1235566777888999999999998887653 211 1 22
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhhhhc---CCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCcHHHH--
Q 043124 143 VTFISVLSACTHAGLVEEGRRRFLSMTCG---YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK----FQPNAVIW-- 213 (331)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~p~~~~~-- 213 (331)
..+..+...+...|++++|...+.+.... .+.......+..+...+...|++++|.+.+.+.. .......+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 33445556677789999999998887531 1111123445556667888999999988876531 11111111
Q ss_pred ---HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch----HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 214 ---GALLGGCKLHRNLEIAHIAVNELMILEPNNSGY----CTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 214 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...+..+...|+.+.|..++.......+..... +..+..++...|++++|...+++....
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111233556889999999987765532222211 346778899999999999999987654
No 120
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=9.4e-05 Score=60.35 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=154.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--hCCHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVL-SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK--CGSLDR 94 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~ 94 (331)
-.-.+.+|+++|.+.... .|.-...+.-+ -+|.+..-++-+.++++--++. ++.+....|....-..+ .|+..+
T Consensus 163 mR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhH
Confidence 344688999999998876 34555555433 3456777778888888776665 34444444443333222 233222
Q ss_pred HH--HHHhhcC-------------------------------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 043124 95 SL--LVFFKLR-------------------------------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141 (331)
Q Consensus 95 a~--~~~~~~~-------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 141 (331)
++ ++-+... +.=+.+.-.|+-.|.+.+++.+|..+..++. |.+
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----Ptt 315 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTT 315 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCC
Confidence 21 1111111 1113456667778899999999999887752 223
Q ss_pred HHHHH--HHHH-----HHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHH
Q 043124 142 GVTFI--SVLS-----ACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAV 211 (331)
Q Consensus 142 ~~~~~--~ll~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~ 211 (331)
+.-|. .+.. -........-|.+.|+.+- ..+..-| +.--.++...+.-..++++++-.++.+. +..|..
T Consensus 316 P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 316 PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 33332 2221 1222334566888887766 4444333 3344566777778889999999888765 444444
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.-..+..+.+..|++.+|+++|-++..-+- +...+...|.++|.+.++.+.|++++-++..
T Consensus 395 Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 395 FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 445578889999999999999988766443 3344446778999999999999988876643
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=6.2e-06 Score=70.08 Aligned_cols=124 Identities=11% Similarity=0.059 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 043124 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGC 220 (331)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 220 (331)
.....++..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++.+. ...| +..........|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33445677777889999999999999933 355 4455788888899999999998863 3344 555566666668
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
...++++.|..+.+++....|++...|..|..+|...|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998875
No 122
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.51 E-value=0.00014 Score=59.06 Aligned_cols=229 Identities=10% Similarity=0.067 Sum_probs=165.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCH--------------hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHH
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISPDQ--------------VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG 79 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 79 (331)
..+.+.|.+++|..=|+...+....... +.....+..+...|+...|+.....+++.. +-+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 3467889999999999999887421111 112233445667899999999999999874 5588889
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH----HHHH----
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKL---REKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT----FISV---- 148 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l---- 148 (331)
..-..+|...|+...|+.=++.. ...+...+..+-..+...|+.+.++...++.++. .||... |-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 99999999999999998665544 4456777777888888999999999999988875 455432 1111
Q ss_pred -----HHHHhccCcHHHHHHHHHhhhhcCCCCC---cHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHH
Q 043124 149 -----LSACTHAGLVEEGRRRFLSMTCGYSITP---EVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLG 218 (331)
Q Consensus 149 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~ 218 (331)
+......++|.++..-.+.+. +..... ....+..+-.++...+++.+|++...+ +.+.|+ +.++--=..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vl-k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVL-KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 122345677888888888777 332221 123444555667788999999988876 456665 777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
+|.....++.|+.-|+.+.+.+|++..+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 8888889999999999999988876544
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.9e-05 Score=64.23 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=163.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH-------
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA------- 81 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 81 (331)
+..+.++.-+..+++.|++.+....... -+..-++....++...|.+.......+...+.|.. ...-++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567778888889999999999888764 24444566666788888888888777777766532 2233333
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEE 160 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 160 (331)
+..+|.+.++++.|...|++...+... -....+....+++....+...-.+ |.. .-.-.-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHH
Confidence 334566677888888888875432111 112233344556666555554433 332 122223667788999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
|+..|.++++.. +-|...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|++.++
T Consensus 377 Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999443 567899999999999999999998877753 34554 55666666677788899999999999999
Q ss_pred cCCCCcchHHHHHHHHHh
Q 043124 239 LEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 239 ~~p~~~~~~~~l~~~~~~ 256 (331)
.+|++..+-..+.++...
T Consensus 455 ~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 999987775555555543
No 124
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=1.9e-05 Score=58.06 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc--hhHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPD---QVTMATVLSACAHLGALDLGREIHLYVMQIGFDID--VYIGSAL 82 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 82 (331)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455566655 3677777777777777653 222 12222344566677777777777777777652222 1233445
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREK--NLFCWNSIIEGLAVHGFAHEALAMFDRM 133 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 133 (331)
..++...|++++|+..++....+ ....+.....++.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66677777777777777665433 2345566677777777777777777653
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=4.5e-06 Score=60.64 Aligned_cols=96 Identities=10% Similarity=-0.001 Sum_probs=42.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhc
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLH 223 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 223 (331)
..+...+...|++++|...|+.+.... +.+...+..+...+...|++++|...+++. ...| +...+..+..++...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 334444444555555555555444111 223344444444444445555554444432 1222 233344444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 043124 224 RNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~~~p~~ 243 (331)
|++++|...++++++..|++
T Consensus 99 g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 99 GEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 55555555555554444443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.1e-05 Score=58.65 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 179 EHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
.....+...+...|++++|.+.++.. ...| +...+..+..++...|++++|...++.+++..|++...+..+..+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34444555566666666666666653 2233 445555555566666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHhc
Q 043124 257 VSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 257 ~g~~~~a~~~~~~m~~~ 273 (331)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00011 Score=57.61 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=143.7
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHH-
Q 043124 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL- 127 (331)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~- 127 (331)
+-+.-.|++..++..-....... -+...-.-+-++|...|.+.....-...-..+.......+...+..-++-+.-.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 34445688877766654443331 234444446677887887665544333333334444444444444444444433
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 043124 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQ 207 (331)
Q Consensus 128 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 207 (331)
++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|...+++|.--
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344455444444444444455567899999999999988744 2223333355677888999999999998744
Q ss_pred CcHHHHHHHHHHHh----hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 208 PNAVIWGALLGGCK----LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 208 p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.+..|.+.|..+++ ..+.+..|.-+|+++.+..|.++...+-...++...|++++|..++++..+..
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 56777777777754 34569999999999999666667777888999999999999999999988653
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=2.4e-05 Score=56.87 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSSK-FQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
....-.+...+...|++++|..+|+-+- ..| +..-|..|..++-..|++++|+..+..+..++|+++..+..+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3344456667789999999999999743 455 46667778888899999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhc
Q 043124 256 EVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~~~ 273 (331)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.7e-05 Score=63.02 Aligned_cols=198 Identities=11% Similarity=-0.053 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHh
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS-VLSACT 153 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~ 153 (331)
-+++.+..+.+..+++.|++++..-.++ +......+..+|....++..|-..|+++-.. .|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3555566666777777777776655443 4456677777777778888888888887664 455444432 245566
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH--HHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL--LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 231 (331)
+.+.+..|.++...|. +. ++...-..-+.+ .-..+++..+..++++.+-..+..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~-D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLL-DN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhc-CC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 7788888888888887 31 222111111111 23567888888888887655556665556556778999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCcc
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS 282 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 282 (331)
-|+.+.+..--++..-..+.-+..+.|+++.|+++..++.++|++.. |..
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~H-PEl 215 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQH-PEL 215 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcC-Ccc
Confidence 99999996544444444577777888999999999999999998765 443
No 130
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.39 E-value=0.00064 Score=59.88 Aligned_cols=265 Identities=14% Similarity=0.121 Sum_probs=150.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC----------------------CchHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG----------------------ALDLGREIH 64 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------------~~~~a~~~~ 64 (331)
..|++|.+.|.+.|.+++|.++|++.... ..+..-|..+..+|+.-. +++....-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 45788888888888888888888877664 224444555555443211 111112222
Q ss_pred HHHHHhC-----------CCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---C------ChhhHHHHHHHHHhCCCHH
Q 043124 65 LYVMQIG-----------FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---K------NLFCWNSIIEGLAVHGFAH 124 (331)
Q Consensus 65 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~ 124 (331)
+.+...+ -+.++..|..-+..+ .|+..+-..+|.+..+ | -...|..+...|-..|+.+
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 2222211 111223333322222 2444444555544432 1 1135777888888888888
Q ss_pred HHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCC---------CC-------cHhHHHHHH
Q 043124 125 EALAMFDRMIYENVEPN---GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI---------TP-------EVEHYGCMV 185 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------~~-------~~~~~~~l~ 185 (331)
.|..+|++..+...+.- ..+|......-.+..+++.|.++.+....--.. .| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 88888888877643321 234444445555667788888877776621000 00 223455555
Q ss_pred HHHHHcCCHHHHHHHHHhCC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHh---
Q 043124 186 DLLSKAGLLEDALELIRSSK----FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE--PNNSGYCTLLLNMYAE--- 256 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~--- 256 (331)
+..-..|-++....+++++- ..|- ........+-.+.-++++.+++++.+.+. |.-...|+..+..+.+
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55556667777777776532 2333 22222223445667889999999988855 4555566655554443
Q ss_pred cCCchHHHHHHHHHHhcCCCCC
Q 043124 257 VSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 257 ~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
.-+.+.|..+|++.++ |++|.
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHH
Confidence 2367889999999998 66665
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=7.9e-07 Score=47.59 Aligned_cols=33 Identities=36% Similarity=0.740 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN 141 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 141 (331)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00017 Score=62.69 Aligned_cols=219 Identities=11% Similarity=-0.032 Sum_probs=146.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCCh--hhHHHHHHHHHhCCCH
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL--FCWNSIIEGLAVHGFA 123 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~ 123 (331)
+=++.+...|++++|.+...+++..+ +.+...+..-+-+..+.+++++|+.+.+.-..... .-+..-..++.+.+..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 34466788899999999999999886 55677777778889999999999977665443222 1112334455688999
Q ss_pred HHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCC-CcHhHHHHHHHHHHHcCCHHHHHHHH
Q 043124 124 HEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT-PEVEHYGCMVDLLSKAGLLEDALELI 201 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 201 (331)
++|+..++- ..+ +..+...-...|.+.|++++|..+|+.+. +++.. .+...-..+ ...+-...+. ++
T Consensus 96 Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~dd~d~~~r~nl----~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 96 DEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLA-KNNSDDQDEERRANL----LAVAAALQVQ-LL 164 (652)
T ss_pred HHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCchHHHHHHHHH----HHHHHhhhHH-HH
Confidence 999999982 222 33355555677899999999999999998 33322 112222222 2222222222 56
Q ss_pred HhCCCCCcHHHHHH---HHHHHhhcCCHHHHHHHHHHHHh-----c---CCC-------CcchHHHHHHHHHhcCCchHH
Q 043124 202 RSSKFQPNAVIWGA---LLGGCKLHRNLEIAHIAVNELMI-----L---EPN-------NSGYCTLLLNMYAEVSRWAEV 263 (331)
Q Consensus 202 ~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~-----~---~p~-------~~~~~~~l~~~~~~~g~~~~a 263 (331)
+..+..|+ .+|.. ....+...|++.+|+++++.+.+ + +-+ -..+...|..++...|+.++|
T Consensus 165 q~v~~v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 66776663 23333 33446789999999999999933 1 111 113445678888999999999
Q ss_pred HHHHHHHHhcCCCC
Q 043124 264 TKIRVAMKELGIEK 277 (331)
Q Consensus 264 ~~~~~~m~~~~~~~ 277 (331)
..++..........
T Consensus 244 ~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 244 SSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999988776543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00013 Score=61.90 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=99.5
Q ss_pred HHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHH
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 228 (331)
.....|+.+.|+..++.+.+. .+-|+..+......+.+.++.++|.+.++++ ...|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 456678999999999998833 2455777777788899999999999999874 46676 5566677778999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
|.+++++.....|+++..|..|.++|...|+..++.....+....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888877776543
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=1.1e-06 Score=46.72 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP 140 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 140 (331)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777766
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00015 Score=56.40 Aligned_cols=183 Identities=12% Similarity=0.072 Sum_probs=136.5
Q ss_pred CCHHHHHHHHhhcCC--------CCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 90 GSLDRSLLVFFKLRE--------KNL-FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 90 g~~~~a~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... ++-+...-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 344555555554432 222 35667777888899999999999998876 43333322222233556899999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS--KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
|+++|+.+.++. +.|..++-.=+-..-..|+--+|++-+.+- .+..|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999543 556667766666677788888888777653 2567899999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHhcCC
Q 043124 239 LEPNNSGYCTLLLNMYAEVS---RWAEVTKIRVAMKELGI 275 (331)
Q Consensus 239 ~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 275 (331)
..|.++.++..+.+.+.-.| +.+-+..+|.+..+...
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999998988876665 55668888888876654
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=9.9e-05 Score=54.25 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc--HhHHHHHHHHHHHcCCH
Q 043124 120 HGFAHEALAMFDRMIYENVEPN---GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLL 194 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 194 (331)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.. ....|+ ......|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 556666666666665542 222 12222344555566666666666666662 221121 12233345555566666
Q ss_pred HHHHHHHHhCCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 195 EDALELIRSSKFQ-PNAVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 195 ~~a~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
++|+..++...-. .....+.....++...|+.++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666666553211 12233333444456666666666665543
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=3.5e-05 Score=69.36 Aligned_cols=241 Identities=13% Similarity=0.133 Sum_probs=151.2
Q ss_pred chhhHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhC--------CCC
Q 043124 5 DIISWTTMIT--CYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG--------FDI 74 (331)
Q Consensus 5 ~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~ 74 (331)
|..|-.+++. .|...|+.+.|.+-.+-++ +...|..+.+.|.+..+.+-|.-.+-.|.... .+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444542 3566788888877766654 34678889999988888887776665554321 111
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
+...-....-.-...|.+++|+.+|.+.++ |..|=..|...|.|++|+++-+.--. +.. ..||-.-...+-.
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYNYAKYLEA 870 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHHHHHHHHh
Confidence 112222233344577899999999988875 44566678888999999988765322 222 2344445555666
Q ss_pred cCcHHHHHHHHHhhhhcCCC-------------------CCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHH
Q 043124 155 AGLVEEGRRRFLSMTCGYSI-------------------TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215 (331)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ 215 (331)
.++.+.|+..|++.. .+.+ ..|...|.-....+-..|+.+.|+.++.... -|-.
T Consensus 871 r~Di~~AleyyEK~~-~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------D~fs 943 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAG-VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------DYFS 943 (1416)
T ss_pred hccHHHHHHHHHhcC-ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------hhhh
Confidence 778888888777543 1110 1123333333444445677777777776544 3445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+++..+-+|+.++|-++.++- .+..+...|.+.|...|++.+|..+|.+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556666677777777766543 234455669999999999999998887764
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.29 E-value=0.00012 Score=65.25 Aligned_cols=140 Identities=15% Similarity=0.208 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 158 (331)
|..+.+.|...|+++.|+++|-+.- .++-.|..|.+.|+|+.|.++-++. .|...+...|..-..-+-+.|++
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcch
Confidence 4444555555555555555554432 2334455555555555555554443 22233344444444444555555
Q ss_pred HHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043124 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235 (331)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 235 (331)
.+|.++|-.+. .|+. -|..|-+.|..+..+++.++-.-..-..|...+..-+-..|+.+.|+.-|-+
T Consensus 841 ~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 841 AEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 55555544433 2321 2344555555555555544321001112333344445555555555554433
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.29 E-value=2e-05 Score=67.12 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=54.4
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCH
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNL 226 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 226 (331)
...+...|+++.|+..|++..+.. +.+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 344455566666666666666221 223455555556666666666666666542 2334 344555555556666666
Q ss_pred HHHHHHHHHHHhcCCCCcchH
Q 043124 227 EIAHIAVNELMILEPNNSGYC 247 (331)
Q Consensus 227 ~~a~~~~~~~~~~~p~~~~~~ 247 (331)
++|...+++++++.|++..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 666666666666666655543
No 140
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=7e-05 Score=68.75 Aligned_cols=180 Identities=11% Similarity=-0.007 Sum_probs=117.3
Q ss_pred CHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh
Q 043124 91 SLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 91 ~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 167 (331)
+...|...|-+..+.|+ ..|..|...|+..-+...|.+.|++..+.+ +.+..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 35666666655544443 467778888877777888888888877764 34556666777788888888888777433
Q ss_pred hhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc
Q 043124 168 MTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245 (331)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 245 (331)
..+......-...|....-.|.+.++...|..-|+. +...| |...|..+..+|...|++..|.++|.++..++|.+.-
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 331211111122333344456677777887777775 34455 5677788888888888888888888888888887654
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 246 YCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 246 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
.-.......+..|++++|+..+....
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555666777777777776654
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.0016 Score=59.50 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=153.7
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 043124 16 YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSA--CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93 (331)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 93 (331)
....+++.+|+.-..++.+. .|+.. |...+.+ ..+.|+.++|..+++.....+.. |..+...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34678899999999998876 34433 3334444 46889999999888777665533 8889999999999999999
Q ss_pred HHHHHHhhcCCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----------cHHHH
Q 043124 94 RSLLVFFKLREK--NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG----------LVEEG 161 (331)
Q Consensus 94 ~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a 161 (331)
+|..+|++.... +......+..+|.+.+.+.+-.++--+|-+. ++-+...|.+++......- -..-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999999865 4445555667788888776655554444443 5666777777777655331 13457
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCC--cHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SK-FQP--NAVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
.+.++.+.++.|-.-+..-.......+-..|++++|.+++.. .. ..+ +...-+.-+..+...+++.+..++..+++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 778888885554111222222223445678999999999852 22 122 33333455556788899999999999999
Q ss_pred hcCCCC
Q 043124 238 ILEPNN 243 (331)
Q Consensus 238 ~~~p~~ 243 (331)
..++++
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 988887
No 142
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00055 Score=63.36 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
..|+.+.++-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..+.+..-.|. +-+.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHH
Confidence 45888888888888888887766442 2667888888888888888888888776666654444 345688888
Q ss_pred HhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 166 (331)
++.+++.+.++++ ..||+.....+..-|...|.++.|.-+|... ..|..|...+...|++..|...-+
T Consensus 1177 Akt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888776553 3455555555666666666666665555433 224444444555555555444333
Q ss_pred hhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
+.. +..+|..+-.+|...+.+.-|.-+= +.+-....-..-++..|-..|-+++-..+++..+.+...+..+
T Consensus 1245 KAn-------s~ktWK~VcfaCvd~~EFrlAQiCG--L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1245 KAN-------STKTWKEVCFACVDKEEFRLAQICG--LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred hcc-------chhHHHHHHHHHhchhhhhHHHhcC--ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 222 3334444444444433332221100 0011122233344555555555555555555555544444444
Q ss_pred HHHHHHHHHh
Q 043124 247 CTLLLNMYAE 256 (331)
Q Consensus 247 ~~~l~~~~~~ 256 (331)
|..|...|++
T Consensus 1316 fTELaiLYsk 1325 (1666)
T KOG0985|consen 1316 FTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.7e-06 Score=53.52 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=44.2
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
...|++++|.+.++++....|++..++..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889999999999998998888888899999999999999998888764
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.26 E-value=1.4e-06 Score=45.13 Aligned_cols=31 Identities=39% Similarity=0.829 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGI 37 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 37 (331)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.23 E-value=0.0019 Score=53.85 Aligned_cols=110 Identities=10% Similarity=0.151 Sum_probs=77.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhc
Q 043124 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223 (331)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~ 223 (331)
+.+..+.-|...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... + -++..|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS-K--KSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--CCCCChHHHHHHHHHC
Confidence 44455666677787777777766655 57778888888888888888887776554 2 2346777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 224 RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
|+..+|..+..++ . +..-+..|.+.|++.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k~--------~-~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI--------P-DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC--------C-hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888777661 1 255677788888888887665443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=2.4e-05 Score=52.36 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 181 YGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
+..+...+...|++++|...+++. ...|+ ...+..+...+...+++++|.+.+++.....|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888777763 33343 3556666666777788888888888888877777777777888888888
Q ss_pred CchHHHHHHHHHHhc
Q 043124 259 RWAEVTKIRVAMKEL 273 (331)
Q Consensus 259 ~~~~a~~~~~~m~~~ 273 (331)
+++.|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776543
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.8e-05 Score=63.04 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=75.2
Q ss_pred HHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHH
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~ 228 (331)
-+.+.+++.+|+..|.+.+ ... +-|...|..-..+|++.|.++.|++-.+. +.+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI-~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI-ELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH-hcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3567788888888888888 221 33566777778888888888888776664 456665 6788888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
|.+.|+++++++|++..+...|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888877555544433
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00077 Score=57.47 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=66.9
Q ss_pred HccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCCHHHHHH
Q 043124 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--N-LFCWNSIIEGLAVHGFAHEALA 128 (331)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~ 128 (331)
...|+++.|+..++.+++. .+-|...+......+.+.|+..+|.+.++++... + ...+-.+..+|.+.|++.+|..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3556666666666666555 2345555555566666666666666666666542 2 3345556666666666666666
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 043124 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 129 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 163 (331)
+++...... +-|+..|..|..+|...|+..++..
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 666665543 5566666666666666666555443
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.18 E-value=0.0026 Score=52.88 Aligned_cols=247 Identities=14% Similarity=0.106 Sum_probs=155.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQV--TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS 95 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 95 (331)
-.|+++.|.+-|+.|... |... -...|.-...+.|+.+.|.++-+..-..- +.-...+...+...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357777777777777652 2221 22233334456677777777766665543 22356677778888888888888
Q ss_pred HHHHhhcCC-----CChh--hHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHHH
Q 043124 96 LLVFFKLRE-----KNLF--CWNSIIEGLA---VHGFAHEALAMFDRMIYENVEPNGV-TFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 96 ~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 164 (331)
+++++.-.+ +++. .--.|+.+-. -..+...|...-.+..+. .|+.. .-.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhH
Confidence 888775442 3332 1112222211 123455566555555443 45432 223355788899999999999
Q ss_pred HHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh---C-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 043124 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS---S-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL 239 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 239 (331)
++.+. +. .|.+..+... .+.+.|+. +++-++. + .++| +..+-..+..+....|++..|..--+.+...
T Consensus 286 lE~aW-K~--ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAW-KA--EPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHH-hc--CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99999 33 5555555432 23455543 3333332 1 1345 4666777888888999999999988888888
Q ss_pred CCCCcchHHHHHHHHHh-cCCchHHHHHHHHHHhcCCCCC
Q 043124 240 EPNNSGYCTLLLNMYAE-VSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 240 ~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
.|. ..+|..|.+.-.- .|+-.++.+.+.+.....-.|.
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 898 6677777776654 4999999999999887765555
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=9.1e-05 Score=56.21 Aligned_cols=109 Identities=19% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLA 118 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 118 (331)
+..+...+...|++++|...+++..+....+. ...+..+..++.+.|++++|...+++..+ .+...+..+...+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44444444445555555555555444322111 23444445555555555555555544432 12333444444444
Q ss_pred hCCC--------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 043124 119 VHGF--------------AHEALAMFDRMIYENVEPNGVTFISVLSACTHAG 156 (331)
Q Consensus 119 ~~~~--------------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 156 (331)
..|+ +++|.+++++....+ |+. +..++..+...|
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTG 165 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcC
Confidence 4333 566777777766643 332 444444444433
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.16 E-value=8.3e-06 Score=51.42 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHHhc
Q 043124 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS-RWAEVTKIRVAMKEL 273 (331)
Q Consensus 209 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 273 (331)
+...|..+...+...|++++|+..|+++++.+|+++.+|..+..+|.+.| ++++|+..+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677888888999999999999999999999999999999999999999 799999999987754
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=5.4e-05 Score=53.40 Aligned_cols=92 Identities=14% Similarity=-0.051 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHH
Q 043124 182 GCMVDLLSKAGLLEDALELIRSSK-FQPN----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN---SGYCTLLLNM 253 (331)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 253 (331)
-.++..+.+.|++++|.+.+++.. ..|+ ...+..+..++...|+++.|...++.+....|++ ...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444555555555555554421 1121 2233344444555555555555555555544442 2334445555
Q ss_pred HHhcCCchHHHHHHHHHHhc
Q 043124 254 YAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 254 ~~~~g~~~~a~~~~~~m~~~ 273 (331)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555543
No 153
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.16 E-value=0.00069 Score=60.73 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=35.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
...+.|.+|+.+++.+...+ .-..-|..+..-|+..|+++.|.++|-+.- .++--|..|.+.|+++.|
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 34445555555555554432 122234444455555555555555554432 123334455555555555
Q ss_pred HHHHHh
Q 043124 198 LELIRS 203 (331)
Q Consensus 198 ~~~~~~ 203 (331)
.++-.+
T Consensus 811 ~kla~e 816 (1636)
T KOG3616|consen 811 FKLAEE 816 (1636)
T ss_pred HHHHHH
Confidence 555443
No 154
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.12 E-value=4.8e-05 Score=63.19 Aligned_cols=261 Identities=11% Similarity=0.034 Sum_probs=171.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCchHHHHHHHHH--HHh--CCC-CchhHHHHHHH
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISPDQ----VTMATVLSACAHLGALDLGREIHLYV--MQI--GFD-IDVYIGSALVD 84 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~l~~ 84 (331)
.-+++.|+......+|+...+.|-. |. .+|+.|.++|.-.+++++|+++...= +.. |-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4478999999999999999998743 43 35677777888888999998876431 111 111 12334455677
Q ss_pred HHHhhCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHhCCC--------------------HHHHHHHHHHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLRE-------K--NLFCWNSIIEGLAVHGF--------------------AHEALAMFDRMIY 135 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~ 135 (331)
.+--.|.+++|...-.+-.. + ...++..+...|...|+ ++.|.+.|.+=++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 77777888888765433221 1 23456666777765543 2334444433221
Q ss_pred ----cC-CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh---hcCCCC-CcHhHHHHHHHHHHHcCCHHHHHHHHHh---
Q 043124 136 ----EN-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMT---CGYSIT-PEVEHYGCMVDLLSKAGLLEDALELIRS--- 203 (331)
Q Consensus 136 ----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 203 (331)
.| --.-...|..|...|.-.|+++.|+...+.-. +.+|-. .....+..|..++.-.|+++.|.+.++.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11 01112345555556666789999887655422 233322 2356778888899999999999988874
Q ss_pred ----CC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 204 ----SK-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE------PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 204 ----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
++ -.....++.+|...|.-..++++|+.++.+-+.+. ......+..|..+|...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33 23456678889999999999999999998877621 23456678899999999999999998887765
Q ss_pred cCC
Q 043124 273 LGI 275 (331)
Q Consensus 273 ~~~ 275 (331)
...
T Consensus 344 ~s~ 346 (639)
T KOG1130|consen 344 SSL 346 (639)
T ss_pred HHH
Confidence 443
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.11 E-value=1.3e-05 Score=49.90 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=48.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+...+...|++++|.+.|+++++..|++...+..++.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456788889999999999999988988888888899999999999999998888754
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.10 E-value=0.00061 Score=56.20 Aligned_cols=93 Identities=10% Similarity=0.060 Sum_probs=41.6
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC----CCCcH
Q 043124 110 WNSIIEGLAVH-GFAHEALAMFDRMIYE----NVEPN--GVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----ITPEV 178 (331)
Q Consensus 110 ~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 178 (331)
+..+...|-.. |++++|.+.|++..+. | .+. ...+..+...+.+.|++++|..+|+++....- ...+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33444555555 5666666666655432 2 111 23344455556666666666666666552210 01111
Q ss_pred h-HHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 179 E-HYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 179 ~-~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
. .+-..+-++...|++..|...+++
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 222223344555666666666654
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=0.0001 Score=51.96 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=55.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHH
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN----AVIWGALLGG 219 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~ 219 (331)
..+...+.+.|++++|...|..+.....-.+ ....+..+..++.+.|++++|...++.. ...|+ ...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444555566666666666666653221101 1234444556666666666666666643 12222 3345555556
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
+...|+.++|.+.++++++..|++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666777777777777777766665544
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=5.7e-05 Score=50.42 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
|..+...+...|++++|...|++..+.. +.+...+..+..++...++++.|.+.++...+.. +.+..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556666666777777777777766553 2233555566666666677777777776666653 2334455566666666
Q ss_pred hCCHHHHHHHHhhc
Q 043124 89 CGSLDRSLLVFFKL 102 (331)
Q Consensus 89 ~g~~~~a~~~~~~~ 102 (331)
.|++++|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666666554
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=5e-06 Score=54.78 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN-AVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|+.++++....|+ ......+..++.+.|++++|.+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 445555555555552211111222333344555555555555555544222222 1222233344455555555555544
Q ss_pred H
Q 043124 235 E 235 (331)
Q Consensus 235 ~ 235 (331)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00014 Score=59.75 Aligned_cols=128 Identities=12% Similarity=0.077 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSA-CAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
..|-.+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468889999999999999999999998653 2344555544444 33457777899999999887 56788889999999
Q ss_pred HHhhCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 86 YAKCGSLDRSLLVFFKLREK------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
+.+.|+.+.|..+|++.... -...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988753 2347888888888899999999999888875
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.06 E-value=6.8e-06 Score=42.46 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYEN 137 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 137 (331)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=1.6e-05 Score=52.32 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHH
Q 043124 120 HGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 198 (331)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. . ..+. .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 46667777777777665321 1333344466667777777777777766 2 1111 12233334466666777777777
Q ss_pred HHHHh
Q 043124 199 ELIRS 203 (331)
Q Consensus 199 ~~~~~ 203 (331)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66653
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.05 E-value=0.00036 Score=57.38 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA-CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (331)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46666666666666777777777776443 2222333332222 223455666777777766443 4455666666777
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 188 LSKAGLLEDALELIRSS-KFQPNA----VIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+.++.+++.+.-|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 77777777777777652 222222 367777777667777777777777777766653
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.00019 Score=54.26 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=54.9
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDI--DVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIE 115 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~ 115 (331)
...|..+...+...|++++|...++........+ ...++..+..++...|++++|+..+++.... ...++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455566666666777777777777776553222 2246666777777777777777777665432 2334444554
Q ss_pred HHH-------hCCCHHHHHHHHHH
Q 043124 116 GLA-------VHGFAHEALAMFDR 132 (331)
Q Consensus 116 ~~~-------~~~~~~~a~~~~~~ 132 (331)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 66776655444443
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.00066 Score=60.57 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHhC--C---CHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhcc--------CcHHHHHHHHHhhhhc
Q 043124 106 NLFCWNSIIEGLAVH--G---FAHEALAMFDRMIYENVEPN-GVTFISVLSACTHA--------GLVEEGRRRFLSMTCG 171 (331)
Q Consensus 106 ~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~ 171 (331)
+..+|...+.+.... + +...|..+|++..+.. |+ ...+..+..++... .++..+.+........
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 455666666654332 2 2556777777776653 33 33343332222111 1122333333332211
Q ss_pred CCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc
Q 043124 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245 (331)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 245 (331)
.....+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.+++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 112223345555544444556666666666542 34555555666666666666666666666666666666554
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.03 E-value=9.8e-05 Score=49.95 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccC--------cHHHHHHHHHhhhhcCCCCCcHh
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENV-EPNGVTFISVLSACTHAG--------LVEEGRRRFLSMTCGYSITPEVE 179 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 179 (331)
+....|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. ..-+...+|+.|. ..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 344556667777999999999999999998 889999999988876542 3446678888888 678889989
Q ss_pred HHHHHHHHHHH
Q 043124 180 HYGCMVDLLSK 190 (331)
Q Consensus 180 ~~~~l~~~~~~ 190 (331)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00067 Score=56.62 Aligned_cols=257 Identities=13% Similarity=0.014 Sum_probs=160.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
...+.+..++..|+..+....+.. +-+..-|..-...+...|+++++.--.++-.+.. +-....+.-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 344556667778888888887764 2234445555555555666666655444433321 11122333334444444444
Q ss_pred HHHHHHHhhc---------------CC-----CChhhHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 043124 93 DRSLLVFFKL---------------RE-----KNLFCWNSI-IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151 (331)
Q Consensus 93 ~~a~~~~~~~---------------~~-----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 151 (331)
.+|.+.++.- .. |....|..+ ..++.-.|++++|..+--..++.+ +.+......=..+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccc
Confidence 4444443311 11 111223222 335666788888888877777653 2233222222233
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcHhHH---HHHH----------HHHHHcCCHHHHHHHHHh-CCCC-----CcHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHY---GCMV----------DLLSKAGLLEDALELIRS-SKFQ-----PNAVI 212 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~----------~~~~~~~~~~~a~~~~~~-~~~~-----p~~~~ 212 (331)
+.-.++.+.|...|++.. ...|+...- .... .-..+.|++..|.+.+.+ +++. |+...
T Consensus 213 ~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred cccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 456788999999999988 234542211 1111 223578999999999986 4444 45556
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 043124 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 275 (331)
|........+.|+.++|+.-.+++++++|.....|..-..++.-.++|++|.+-++...+..-
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666666788999999999999999999999888888889999999999999999998876543
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=9.3e-05 Score=59.04 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=84.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcC
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAG 192 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 192 (331)
..-+.+.+++.+|+..|.+.++.. +-|.+.|..=..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 445778899999999999999974 5677888888999999999999999888877 23444 678999999999999
Q ss_pred CHHHHHHHHHh-CCCCCcHHHHHHHHHH
Q 043124 193 LLEDALELIRS-SKFQPNAVIWGALLGG 219 (331)
Q Consensus 193 ~~~~a~~~~~~-~~~~p~~~~~~~l~~~ 219 (331)
++++|++.|++ +.+.|+-.+|-.=+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999987 5688987766555544
No 169
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0024 Score=59.42 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=170.9
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
.-|...|..++....+.|.+++-...+.-.++..-+|...+ .|+-+|++.++..+.+++. ..|+......+
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQV 1200 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHH
Confidence 45788899999999999999999999887777766666554 7889999999988776654 36788888888
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
.+-|...|.++.|.-+|..+ .-|..|...+...|++..|...-++. .+..||-.+-.+|...+.+.-|.
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~v-----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNV-----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH
Confidence 99999999999998887654 46888999999999999888776553 36678888888888877765443
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-c
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQ-PNAVIWGALLGGCKLHRNLEIAHIAVNELMI-L 239 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 239 (331)
|- ..++.....-..-++..|-..|-+++.+.+++. +|.. .....|+.|.-.|++- ++++..+.++-... +
T Consensus 1270 -----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRv 1342 (1666)
T KOG0985|consen 1270 -----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRV 1342 (1666)
T ss_pred -----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc
Confidence 22 233344556677888999999999999999885 4532 3455566665555543 44544444444433 1
Q ss_pred C-------CCCcchHHHHHHHHHhcCCchHHHH
Q 043124 240 E-------PNNSGYCTLLLNMYAEVSRWAEVTK 265 (331)
Q Consensus 240 ~-------p~~~~~~~~l~~~~~~~g~~~~a~~ 265 (331)
+ .+....|..|.-.|.+-..|+.|.-
T Consensus 1343 NipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1343 NIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1 2235567777777777777776543
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.02 E-value=0.00014 Score=55.25 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=58.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
...+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...+++++...|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556666677777777777777653 22222 3566677777888888888888888888888887777777788
Q ss_pred HHHhcCC
Q 043124 253 MYAEVSR 259 (331)
Q Consensus 253 ~~~~~g~ 259 (331)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.00077 Score=55.60 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=75.9
Q ss_pred HHHHHHHHhcc-CcHHHHHHHHHhhhhcCCC--CC--cHhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCCcHH
Q 043124 145 FISVLSACTHA-GLVEEGRRRFLSMTCGYSI--TP--EVEHYGCMVDLLSKAGLLEDALELIRSSK--------FQPNAV 211 (331)
Q Consensus 145 ~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~p~~~ 211 (331)
+..+...|... |+++.|...|++..+-+.- .+ -..++..+...+.+.|++++|.++|++.. .+.+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455567777 8999999999887642211 11 14566777888999999999999998642 122222
Q ss_pred -HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHHhcCCch---HHHHHHHH
Q 043124 212 -IWGALLGGCKLHRNLEIAHIAVNELMILEPNNS-----GYCTLLLNMYAEVSRWA---EVTKIRVA 269 (331)
Q Consensus 212 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~---~a~~~~~~ 269 (331)
.+...+-++...||...|.+.+++.....|.-. .+...|+.++. .|+.+ .++.-|+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcc
Confidence 233344456778999999999999998877432 23345666664 34444 44444443
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=0.0003 Score=49.30 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=65.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 043124 12 MITCYSQNKQFREALDAFNEMKNSGISPD--QVTMATVLSACAHLGALDLGREIHLYVMQIGFDI--DVYIGSALVDMYA 87 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 87 (331)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++.......+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888877775543 2355566777777888888888887776652110 2222233344566
Q ss_pred hhCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 043124 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGL 117 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 117 (331)
..|+.++|.+.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776655444444444444444
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.99 E-value=0.00019 Score=48.61 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------CchHHHHHHHHHHHhCCCCchhHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGI-SPDQVTMATVLSACAHLG--------ALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
..-|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456777788999999999999999999 899999999998876543 2345677889999999999999999
Q ss_pred HHHHHHHh
Q 043124 81 ALVDMYAK 88 (331)
Q Consensus 81 ~l~~~~~~ 88 (331)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887765
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.97 E-value=7.3e-05 Score=57.03 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=75.0
Q ss_pred CCchhhHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC----------------CchHHH
Q 043124 3 ARDIISWTTMITCYSQN-----KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG----------------ALDLGR 61 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~ 61 (331)
..|..+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.|+.++-+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 56788899999998865 677778888899999999999999999999876522 447889
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999877654
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00018 Score=54.36 Aligned_cols=94 Identities=10% Similarity=-0.137 Sum_probs=72.6
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLL 251 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 251 (331)
....|..+...+...|++++|+..|++. ...|+ ..++..+...+...|++++|...+++++...|.....+..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788889999998888863 22232 346777888899999999999999999998888888777788
Q ss_pred HHHH-------hcCCchHHHHHHHHH
Q 043124 252 NMYA-------EVSRWAEVTKIRVAM 270 (331)
Q Consensus 252 ~~~~-------~~g~~~~a~~~~~~m 270 (331)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7877 788888766666554
No 176
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.0003 Score=60.39 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=91.6
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Q 043124 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144 (331)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 144 (331)
+.+.+......+++.+....+++.+..++.+.... -..+.+++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33455666777788887888888888888777642 234667899999999999999999988888899999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (331)
++.|+..+.+.|++..|.++...|. ..+...+..++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~-lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMM-LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHH-HhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888877 344445555655545554444
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00026 Score=60.37 Aligned_cols=104 Identities=12% Similarity=-0.003 Sum_probs=83.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (331)
.....+...|++++|++.|+++++.+ +-+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHh
Confidence 34566778899999999999999875 4567788888899999999999999999998332 33577888889999999
Q ss_pred CCHHHHHHHHHh-CCCCCcHHHHHHHHH
Q 043124 192 GLLEDALELIRS-SKFQPNAVIWGALLG 218 (331)
Q Consensus 192 ~~~~~a~~~~~~-~~~~p~~~~~~~l~~ 218 (331)
|++++|+..|++ +.+.|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999987 346676555444443
No 178
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=0.0015 Score=60.48 Aligned_cols=174 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhh
Q 043124 22 FREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK 101 (331)
Q Consensus 22 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 101 (331)
...|+..|-+..+... .=...|..|...|+...+...|...|+.+.+.. ..+........+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555554421 123466677777766666677777777666654 23555666667777777777777776443
Q ss_pred cCCCCh-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC
Q 043124 102 LREKNL-----FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176 (331)
Q Consensus 102 ~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (331)
..+.+. ..|....-.|...++...|..-|+...... |-|...+..+..+|.+.|.+..|.++|.+.. . +.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs-~--LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS-L--LRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH-h--cCc
Confidence 333221 233344555666677777777777666553 3455666677777777777777777776665 1 233
Q ss_pred cHhHHHH--HHHHHHHcCCHHHHHHHHH
Q 043124 177 EVEHYGC--MVDLLSKAGLLEDALELIR 202 (331)
Q Consensus 177 ~~~~~~~--l~~~~~~~~~~~~a~~~~~ 202 (331)
+. .|.. ..-..+..|.+.+|.+.+.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 31 2221 1223455667777666554
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.88 E-value=6.5e-05 Score=47.86 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=50.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
..+.+.++++.|.+++++++..+|+++..+...+.++.+.|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457888999999999999999999999999999999999999999999999988554
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.0053 Score=45.79 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCC
Q 043124 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----KNLFCWNSIIEGLAVHGF 122 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~ 122 (331)
+..+..+.=|++...+-..+-. ...|++...-.|..+..+.|+..+|...|++... .|....-.+..+....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3334444444544333222222 2345666666667777777777777777766543 355566666666666777
Q ss_pred HHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHH
Q 043124 123 AHEALAMFDRMIYEN---VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALE 199 (331)
Q Consensus 123 ~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 199 (331)
+..|...++++.+.+ -.|| +...+.+.+...|....|+.-|+... ++ .|+...-......+.+.|+..++..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~-~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAI-SY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHH-Hh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 777777777766543 2222 33445566667777777777777766 33 3443333333444566666655544
Q ss_pred H
Q 043124 200 L 200 (331)
Q Consensus 200 ~ 200 (331)
-
T Consensus 215 q 215 (251)
T COG4700 215 Q 215 (251)
T ss_pred H
Confidence 3
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00053 Score=49.95 Aligned_cols=94 Identities=4% Similarity=-0.119 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 043124 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR---EKNLFCWNSIIEGLA 118 (331)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 118 (331)
...-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.... ..|+.++..+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344456666778899999999999988875 3366677788999999999999999998654 347788999999999
Q ss_pred hCCCHHHHHHHHHHHHHc
Q 043124 119 VHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~~ 136 (331)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988765
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.0025 Score=56.97 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
..|..+...+...|++++|...+++.. .. .|+...|..+.+.+...|+.++|.+.+++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl-~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAI-DL--EMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444333334455555555555555 11 23444555555555555555555555543
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.81 E-value=0.0071 Score=45.16 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=94.4
Q ss_pred CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCc---HHHH
Q 043124 138 VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-FQPN---AVIW 213 (331)
Q Consensus 138 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~---~~~~ 213 (331)
..|+...-..|..++...|+..+|...|.+.. ..-+.-|....-.+.++....+++..|...++.+. .+|+ +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 35777777778888888999999999998887 43345567777778888888899998888888643 2221 2234
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 214 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
..+.+.+...|.+..|+..|+.+...-|+ +..-......+.++|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45667788889999999999888887776 444345667778888777766544444
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0022 Score=51.59 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHh---hcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 043124 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQ-PNAVIWGALLGGCK---LHRNLEIAHIAVNELMILEPNNSGYCTL 249 (331)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 249 (331)
+-|...|-.|...|...|+++.|..-|.+. .+. ++...+..+..++. ....-.++..++++++..+|++......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557889999999999999999999999863 233 35666666666633 2334678899999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcCC
Q 043124 250 LLNMYAEVSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 250 l~~~~~~~g~~~~a~~~~~~m~~~~~ 275 (331)
|...+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999997643
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00065 Score=58.37 Aligned_cols=120 Identities=14% Similarity=0.097 Sum_probs=97.4
Q ss_pred CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC----CChhh
Q 043124 36 GISPDQVTMATVLSACAHLGALDLGREIHLYVMQI--GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE----KNLFC 109 (331)
Q Consensus 36 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~ 109 (331)
+.+.+......+++.+....+++.+..++-..... ....-..+.+++++.|.+.|..+++++++..=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34567778888888888888889898888777654 2223355667999999999999999999887654 68899
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 155 (331)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777778877777766655
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.0037 Score=50.20 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=98.6
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCCh---h---hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLREKNL---F---CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH- 154 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 154 (331)
....+...|++++|.+.|+.+....+ . ..-.++.++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445566777777777777764211 1 2234566777778888888888877766322122223223333221
Q ss_pred -cC---------------c---HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHH
Q 043124 155 -AG---------------L---VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGA 215 (331)
Q Consensus 155 -~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ 215 (331)
.+ | ...|+..|+.+. ..|=.+.-..+|...+..+....-... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 10 1 123334444444 222223334444443333221101111 13
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPNNS---GYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+.+-|.+.|.+..|..-++.+++.-|+.. .+...++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45558889999999999999999666644 445567899999999999998877654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.76 E-value=0.00019 Score=44.52 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=44.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 184 MVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888863 3445 466777777778888888888888888888888753
No 188
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.72 E-value=0.0069 Score=52.60 Aligned_cols=205 Identities=12% Similarity=0.081 Sum_probs=138.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC---CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 043124 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG---ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96 (331)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 96 (331)
...+++..+++.....-..-+..+|..+...--..- ..+....++++++......-.-+|..+++.-.+..-+..|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 346777777777665434446666665554322222 35667777777766533333456778888888888899999
Q ss_pred HHHhhcCCC-----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc
Q 043124 97 LVFFKLREK-----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171 (331)
Q Consensus 97 ~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (331)
.+|.+..+. ++.++++++..+| +++.+-|.++|+--.+. +.-++.-....+..+...|+-..|..+|++....
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999888752 5667788887776 47888899999876554 3344455556778888889999999999999844
Q ss_pred CCCCCc--HhHHHHHHHHHHHcCCHHHHHHHHHhC----C--CCCcHHHHHHHHHHHhhcCCHH
Q 043124 172 YSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS----K--FQPNAVIWGALLGGCKLHRNLE 227 (331)
Q Consensus 172 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~ 227 (331)
++.++ ...|..++..-..-|++..+.++-+++ + ..+....-..++..|.-.+...
T Consensus 465 -~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 465 -VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred -cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 56655 678999999888999999888876542 1 2222233344555555555443
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.72 E-value=0.007 Score=51.10 Aligned_cols=164 Identities=16% Similarity=0.044 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCcHHHH
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLREK-------NLFCWNSIIEGLAV---HGFAHEALAMFDRMIYENVEPNGVTF 145 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 145 (331)
..+...++-.|....+++...++++.+... ....-...+-++.+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445666799999999999999998764 22333445566777 89999999999996666667888888
Q ss_pred HHHHHHHhc---------cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC-HHH---HHHHH---H----hCC
Q 043124 146 ISVLSACTH---------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL-LED---ALELI---R----SSK 205 (331)
Q Consensus 146 ~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~---a~~~~---~----~~~ 205 (331)
..+.+.|-. ....++|+..|.+.- .+.|+..+--.++..+...|. ++. ..++- . +-+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 887776532 234678888887755 334553332233333333333 221 12221 1 111
Q ss_pred ---CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 206 ---FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 206 ---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
-..+-..+.+++.+++-.|+.++|.+..+++.+..|.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2345566778888888899999999999999887766
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.68 E-value=0.00065 Score=51.99 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCChhhHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc----------------CcHHHHH
Q 043124 104 EKNLFCWNSIIEGLAV-----HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA----------------GLVEEGR 162 (331)
Q Consensus 104 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 162 (331)
.++-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666777777777788888888888877765432 2334566
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (331)
+++++|. .+|+-||..++..++..+.+.+.
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 6666666 56666666666666666655543
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.022 Score=45.79 Aligned_cols=176 Identities=11% Similarity=0.027 Sum_probs=96.4
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhhCCHHHHHHHHhhcCCCC----hhhHHH
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG---SALVDMYAKCGSLDRSLLVFFKLREKN----LFCWNS 112 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~ 112 (331)
+...+-.....+...|+++.|.+.|+.+...-.. +.... -.++.++.+.+++++|...|++..+.. ...|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334445566789999999999999886422 23332 356778889999999999998886421 122322
Q ss_pred HHHHHH--hC---------------CC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC
Q 043124 113 IIEGLA--VH---------------GF---AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172 (331)
Q Consensus 113 li~~~~--~~---------------~~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 172 (331)
.+.+.+ .. .+ ..+|++.|+++++. -|+. .-..+|...+..+....
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHH
Confidence 233222 11 12 23455556665554 1222 22333433333333110
Q ss_pred CCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC----C-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSS----K-FQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
...--.+.+.|.+.|.+..|..-++.+ + ..........++.+|...|..++|......+
T Consensus 175 -----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 -----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111123556677777777776666543 1 1223445556667777777777777665543
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.64 E-value=0.0037 Score=43.88 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHH
Q 043124 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPN--GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDL 187 (331)
Q Consensus 111 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 187 (331)
..+..++-..|+.++|+.+|++..+.|.... ...+..+...+...|+.++|..+|+.....+.-.+ +......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455667778888888888888888775543 33455667777888888888888888774321100 22222334456
Q ss_pred HHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 043124 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGC 220 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~ 220 (331)
+...|+.++|+..+-..- .++...|..-|..|
T Consensus 85 L~~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 677788888877765421 23333444444444
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.56 E-value=0.041 Score=47.02 Aligned_cols=61 Identities=15% Similarity=0.031 Sum_probs=51.4
Q ss_pred HHHHHHHHHH--HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 210 AVIWGALLGG--CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 210 ~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
...-|.|..| +..+|++.++.-+-.-+.++.| ++.+|..++-++....++++|+.++..+.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3455666666 6688999999988888888999 58999999999999999999999998864
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.55 E-value=0.00049 Score=43.19 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHh
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQI 70 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 70 (331)
+...|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556666666667777777777776666653 234556666666666666 566666666666554
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.025 Score=51.18 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=148.8
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHccCCchHHHHHHHHHHHhC---------
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS----PDQVTMATVLSACAHLGALDLGREIHLYVMQIG--------- 71 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 71 (331)
...+|..+.+.--..|+++.|..+++.=...+.. .+..-+...+.-+..+|+.+....++-.+...-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888889999998877643322210 122235556667778888888888776665431
Q ss_pred --CCCchhHHHHHHH--------HHHhhCCHHHHHHHHh--hcC-----CCChhhHHHHHHHHHhCCCHHH---------
Q 043124 72 --FDIDVYIGSALVD--------MYAKCGSLDRSLLVFF--KLR-----EKNLFCWNSIIEGLAVHGFAHE--------- 125 (331)
Q Consensus 72 --~~~~~~~~~~l~~--------~~~~~g~~~~a~~~~~--~~~-----~~~~~~~~~li~~~~~~~~~~~--------- 125 (331)
.+.....|.-+++ .+.+.++..++...|. ... +.-..........+.+.....-
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 1112222322222 0111122222222111 100 0111122233334444333221
Q ss_pred -HHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 126 -ALAMFDRMIY-ENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 126 -a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
-+.+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-++
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1122222221 1333444455556667788899999999888887 68888888888999999999998888776
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 204 SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 204 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
.. .+.-|..+..+|.+.|+.++|.+++-+.-. +.....+|.+.|++.+|.++--+-
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 64 245677789999999999999988755421 125788999999999998776543
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0013 Score=53.20 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSS-KFQPNA----VIWGALLGGCKLHRNLEIAHIAVNELMILEPNN---SGYCTLLL 251 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 251 (331)
.|..-+..+.+.|++++|+..|+.. ...|+. ..+..+..+|...|+++.|...|+.++...|++ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556777777666653 233432 355566666777777777777777777655553 33344456
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 043124 252 NMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 252 ~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.++...|++++|..+++++.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777777664
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0048 Score=48.66 Aligned_cols=140 Identities=10% Similarity=0.026 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhh
Q 043124 22 FREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK 101 (331)
Q Consensus 22 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 101 (331)
.+..+.+|++-.. ...+.+++.+...|.+.-....+.+.++...+.++.....|++.-.+.|+.+.|...|++
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3555555555332 234455666666677777777777777766566677777777777777888887777775
Q ss_pred cCCC----Ch-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 102 LREK----NL-----FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 102 ~~~~----~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..+. |. .+.......|.-.+++..|...|.+....+ +.|....|.-.-+..-.|+...|.+..+.|.
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5431 22 222333444556677777777777776654 3455555555555556677777887777777
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.49 E-value=0.03 Score=43.68 Aligned_cols=184 Identities=12% Similarity=0.049 Sum_probs=96.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGI--SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
+...+-.....+...|++.+|...|+.+..... +--....-.++.++.+.|+++.|...++.+++.-......-+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 333444456667788899999999999887522 112234556777888889999999999988876322222222222
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKN-------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 155 (331)
+.+.+.-....... ...+| ...+..++.-|=.+.-..+|...+..+.+. .-..-+ .+...|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHHHCT
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHc
Confidence 22222111111111 11111 123445555555555566666655555432 111112 255667778
Q ss_pred CcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHH
Q 043124 156 GLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 197 (331)
|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888888877755321111 23445566677777766644
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.48 E-value=0.00065 Score=49.97 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----hcCCCCC
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK-----ELGIEKR 278 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~ 278 (331)
....++..+...|+++.|.+++++++..+|.+...|..++.+|...|+...|.++|+++. +.|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 455667778889999999999999999999999999999999999999999999999873 4577766
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.00085 Score=41.92 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=31.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
...|++++|++.|+++.+.. |-+......+..+|.+.|++++|..+++.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666653 3345555556666666666666666666666
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.022 Score=45.03 Aligned_cols=135 Identities=11% Similarity=-0.031 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHH----
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM---- 184 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 184 (331)
+.+.++..+.-.|.+.-....+++.++.+.+-++.....+.+.-.+.||.+.|...|+++.+..+ ..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 55667777778888888899999998877666777788888888899999999999997774333 2333333333
Q ss_pred -HHHHHHcCCHHHHHHHHHhCCC-C-CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 185 -VDLLSKAGLLEDALELIRSSKF-Q-PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 185 -~~~~~~~~~~~~a~~~~~~~~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
...|.-++++..|...+.++.. . -|+...|.-.-+..-.|+...|.+.++.++...|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3345667888888888877642 2 2444455555555667899999999999999888743
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.11 Score=48.30 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=129.5
Q ss_pred CchhhHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 043124 4 RDIISWTTMITC--YSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81 (331)
Q Consensus 4 p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (331)
||.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...+..++|..+|+.+.... |+......
T Consensus 40 Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~ 115 (932)
T KOG2053|consen 40 PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYH 115 (932)
T ss_pred CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHH
Confidence 4444 4444544 45789999999999888777644 88899999999999999999999999988863 56777778
Q ss_pred HHHHHHhhCCHHH----HHHHHhhcCCCChhhHHHHHHHHHhCCC---------HHHHHHHHHHHHHcC-CCCcHHHHHH
Q 043124 82 LVDMYAKCGSLDR----SLLVFFKLREKNLFCWNSIIEGLAVHGF---------AHEALAMFDRMIYEN-VEPNGVTFIS 147 (331)
Q Consensus 82 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~-~~p~~~~~~~ 147 (331)
+..+|.+.+.+.+ |+++++...+.--..|+.+--.+..... ..-|.+.++.+.+.+ ..-+..-...
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 8888998887765 5566665554433444433222222111 234666677776654 2222222223
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
-...+...|.+++|..++..-....-...+...-+.-+..+...+++.+..++-.++
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 334456788899999999443312222334445556677788888988887776653
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.059 Score=45.09 Aligned_cols=109 Identities=15% Similarity=0.022 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
+.+..|.-+...|+...|.++-.+. . -|+...|...+.+++..++|++-.++-.. + -++.-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCCChHHHHHHH
Confidence 4555567777888888888876665 2 47888888888999999999877765432 1 2346688888888
Q ss_pred HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043124 189 SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 235 (331)
.+.|+..+|..++.++. + ..-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~~--~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP--D-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC--h-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999988888743 1 3345667788888888766444
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.00041 Score=44.77 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHh----cC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMI----LE---PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
.+++.+...|...|++++|+..+++++. .+ |....++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666667777777777777777765 11 1223456667777777777777777777654
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.0038 Score=45.87 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=66.0
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 043124 185 VDLLSKAGLLEDALELIRSSK-FQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 262 (331)
..-+-..|++++|..+|+-+- ..| +..-+..|..++-..+++++|...+..+..++++++..+.....+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 344567888888888887532 222 444556666667778888888888888888888888887888888888888888
Q ss_pred HHHHHHHHHh
Q 043124 263 VTKIRVAMKE 272 (331)
Q Consensus 263 a~~~~~~m~~ 272 (331)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.34 E-value=0.0039 Score=44.18 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=43.9
Q ss_pred CCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 137 NVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 137 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35688888888888888889999999999888888888888888888887543
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.32 E-value=0.038 Score=43.13 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=36.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHH
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPNNSGY---CTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~ 264 (331)
+...|.+.|.+..|...++.+++.-|++... ...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4555888999999999999999988875533 456788888888877543
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.31 E-value=0.0015 Score=55.88 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=59.7
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNA----VIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLL 251 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 251 (331)
+...++.+..+|...|++++|+..|++ +.+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 356677777777777777777777776 4566663 24677777777777777777777777775321 122111
Q ss_pred H--HHHhcCCchHHHHHHHHHHhcCCC
Q 043124 252 N--MYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 252 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
. .+....+.++..++++.....|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 111223344666677777766654
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00019 Score=37.78 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 043124 233 VNELMILEPNNSGYCTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 233 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 264 (331)
++++++.+|+++..|..|..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0042 Score=52.02 Aligned_cols=60 Identities=12% Similarity=-0.041 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+++.|..++.+.+++..|++...+.++.+|+|......-..++...|+++.|+..|+++.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 456666677788888888888888888888888777777888888888888888888876
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.22 E-value=0.00084 Score=37.77 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
++..+...|...|++++|.++++++++..|+++..+..|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778888999999999999999999999999888776653
No 212
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.073 Score=41.78 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=110.6
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCC--hhhHHHHHHHHHhC
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN--LFCWNSIIEGLAVH 120 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~ 120 (331)
.|.....+|....++++|...+.+..+. ...+...|++ ...++.|--+.+++.+-+ +..|+.-...|...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555556667777777777766665543 2323333322 122344444444444321 12344455566666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc----CCCCCcHhHHHHHHHHHHHcCCHHH
Q 043124 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG----YSITPEVEHYGCMVDLLSKAGLLED 196 (331)
Q Consensus 121 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (331)
|.++.|-..+++.-+. ....+++.|+++|++...- .....-...+..+...+++...+.+
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 6666555555543221 2233444555555443211 0111123345555566778888888
Q ss_pred HHHHHHhCC-------CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHhcCCchHHH
Q 043124 197 ALELIRSSK-------FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMI----LEPNNSGYCTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 197 a~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~ 264 (331)
|-..+.+.+ ..|+ -..|...|-.+....|+..|++.++.-.. .+|.+......|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 766665432 1222 23345555556677899999999988665 4577777778888887 567778776
Q ss_pred HHHH
Q 043124 265 KIRV 268 (331)
Q Consensus 265 ~~~~ 268 (331)
+++.
T Consensus 248 kvl~ 251 (308)
T KOG1585|consen 248 KVLS 251 (308)
T ss_pred HHHc
Confidence 6654
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0081 Score=48.70 Aligned_cols=94 Identities=11% Similarity=-0.020 Sum_probs=60.7
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHHhhcCC--C----ChhhHHHHH
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLRE--K----NLFCWNSII 114 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li 114 (331)
.|........+.|++++|...|+.+++...... ..++-.+..+|...|++++|...|+.+.+ | ...++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777777632110 23555677777777777777777777753 2 234555566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 043124 115 EGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
..+...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777778888888888877765
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.086 Score=47.65 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=48.0
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC------------CCCc
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE------------PNNS 244 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------p~~~ 244 (331)
+....-.+.+++.+.|.-++|.+.+-+.+ .|. ..+..|...+++.+|.++.++..--. -.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA 924 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc
Confidence 33445556677777777777777665544 222 23445556666666655554431100 0001
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.. ..-|..+.++|++=+|.+++.+|.++
T Consensus 925 ~~-~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 925 NH-MEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred ch-HHHHHHhhhcccchhHHHHHHHHhHH
Confidence 11 22455666677776777776666544
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.10 E-value=0.17 Score=45.47 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch----------HH
Q 043124 179 EHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY----------CT 248 (331)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----------~~ 248 (331)
.+...+...+.+...+.-|-++|.+++-. -.++......+++.+|..+.++.-+..|+-... |.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHH
Confidence 33444444444555555566666655511 123344455566666666655554444432211 12
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 249 LLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 249 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
.--.+|.++|+-.+|.++++++-...+.
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 2334667778888888888877655443
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.0091 Score=43.84 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHH-----HhCCCCchhH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVM-----QIGFDIDVYI 78 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 78 (331)
...++..+...|++++|..+.+.+.... +-|...|..+|.++...|+...|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455555666666666666666553 3355566666666666666666666665543 2355555443
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.036 Score=44.83 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---CcHHHHHHHHHhhhhcCCCCCcHhHHH
Q 043124 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA---GLVEEGRRRFLSMTCGYSITPEVEHYG 182 (331)
Q Consensus 106 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (331)
|...|-.|..+|...|+.+.|...|.+..+.. +++...+..+..++..+ ....++..+|+++.+.. +-++....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHHH
Confidence 66677788888888888888888887777652 45555555555554433 23456777777777322 33455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 043124 183 CMVDLLSKAGLLEDALELIRSSK-FQPNAVIWGALLG 218 (331)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~l~~ 218 (331)
.|...+...|++.+|...++.|- .-|....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 66677777888888877777642 3333333444443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.97 E-value=0.002 Score=41.47 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCC-HhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNS----GI-SPD-QVTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
.+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34666666677777777777766666532 11 111 33455666666666666666666665543
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.12 Score=45.99 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=33.8
Q ss_pred CHHHHHHHHhhcCC--CChhhHHH-HHHHHHhCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccCcHHHHHHH
Q 043124 91 SLDRSLLVFFKLRE--KNLFCWNS-IIEGLAVHGFAHEALAMFDRMIYEN---VEPNGVTFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 91 ~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~ 164 (331)
..+.|.++++.+.+ |+...|.. -.+.+...|+.++|++.|++..... .+.....+--+...+....+|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44455555555544 33322221 2233444455555555555433210 011112222233444555555555555
Q ss_pred HHhhhhc
Q 043124 165 FLSMTCG 171 (331)
Q Consensus 165 ~~~~~~~ 171 (331)
|..+.+.
T Consensus 328 f~~L~~~ 334 (468)
T PF10300_consen 328 FLRLLKE 334 (468)
T ss_pred HHHHHhc
Confidence 5555533
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.96 E-value=0.19 Score=42.41 Aligned_cols=209 Identities=14% Similarity=0.083 Sum_probs=101.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHH
Q 043124 53 HLGALDLGREIHLYVMQIGFDIDVYI--GSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEAL 127 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 127 (331)
-.|+.+.|.+-|+.|... |.... ...|.-.-.+.|..+.|...-++.... -...+...+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 346666666666666542 11111 111222223445555555555544322 2235666677777777777777
Q ss_pred HHHHHHHHcC-CCCcHHH--HHHHHHHHh---ccCcHHHHHHHHHhhhhcCCCCCcHhH-HHHHHHHHHHcCCHHHHHHH
Q 043124 128 AMFDRMIYEN-VEPNGVT--FISVLSACT---HAGLVEEGRRRFLSMTCGYSITPEVEH-YGCMVDLLSKAGLLEDALEL 200 (331)
Q Consensus 128 ~~~~~m~~~~-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 200 (331)
++.+.-++.. +.++..- -..|+.+-. -..+...|...-.+.. .+.|+..- -..-..++.+.|+..++-.+
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 7776655432 3333221 112222111 1123334443333322 33444221 11224566777777777777
Q ss_pred HHhC-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHH---HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 201 IRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL---MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 201 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
++.+ +..|.+..+...+ ..+.|+ .+..-++++ ..+.|++......+.++-...|++..|..--+...
T Consensus 286 lE~aWK~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 286 LETAWKAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred HHHHHhcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 7653 3344444332221 223333 333333333 33667777776667777777777776665555443
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.94 E-value=0.0087 Score=47.75 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCchhhHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC----------------CchHHH
Q 043124 3 ARDIISWTTMITCYSQN-----KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG----------------ALDLGR 61 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~ 61 (331)
++|..+|-+.+..+... +..+-.-..++.|.+.|+.-|..+|+.|++.+-+.. .-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 46778888888777654 566777778899999999999999999999875542 335678
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
.++++|...|+.||-.+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 999999999999999999999999988775
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0058 Score=38.67 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=31.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..|.+.+++++|.++++.+...+ |.+...+......+...|++++|...|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34555666666666666666553 3344455555555666666666666666655
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.87 E-value=0.15 Score=43.35 Aligned_cols=166 Identities=12% Similarity=0.028 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhc---cCcHHHHHHHHHhhhhcCCCCCcHhHH
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYEN---VEPNGVTFISVLSACTH---AGLVEEGRRRFLSMTCGYSITPEVEHY 181 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (331)
.+...++-+|....+|+...++.+.+...- +.-+...-....-++.+ .|+.++|.+++..+. ...-.+++.+|
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHH
Confidence 344456667999999999999999998751 11122222233445666 899999999999955 23446777788
Q ss_pred HHHHHHHHH---------cCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHhhcCC-HH---HHHHHH---HHHHh----cC
Q 043124 182 GCMVDLLSK---------AGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRN-LE---IAHIAV---NELMI----LE 240 (331)
Q Consensus 182 ~~l~~~~~~---------~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~~~----~~ 240 (331)
..+...|-. ....++|++.+.+. .++||..+--.++..+...|. .+ +..++- ..+.. ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 887776632 22467788888762 345554332222222222332 22 222222 11111 11
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 241 -PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 241 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
-.+...+..++.+..-.|++++|.+..++|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2334556789999999999999999999998663
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.21 Score=40.53 Aligned_cols=175 Identities=13% Similarity=0.015 Sum_probs=114.3
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc
Q 043124 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171 (331)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (331)
-+...++++++..+....-..-.......|++.+|...|....... +-+...-..+++++...|+.+.|..++..+-.+
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3445555666655433323333445677899999999999988764 334555667888999999999999999987732
Q ss_pred CCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCcchHH
Q 043124 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL--EPNNSGYCT 248 (331)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 248 (331)
.. .........-+..+.+.....+..++-.+..-.| |...-..+...+...|+.+.|.+.+-.+++. .-.+...-.
T Consensus 198 ~~-~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 198 AQ-DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred ch-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 11 1111122223445555555555555555554556 5666677778889999999999888777773 344566677
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 043124 249 LLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 249 ~l~~~~~~~g~~~~a~~~~~ 268 (331)
.|+..+.-.|.-+.+...++
T Consensus 277 ~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 277 TLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 88888888886555444443
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.78 E-value=0.22 Score=44.35 Aligned_cols=158 Identities=14% Similarity=0.057 Sum_probs=109.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHhc----cCcHHHHHHHHHhhhhcCCCCCcHhHHHH
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYEN-VEPNG-----VTFISVLSACTH----AGLVEEGRRRFLSMTCGYSITPEVEHYGC 183 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 183 (331)
++...=.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ..+.+.|.+++..+.+. -|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~ 271 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLF 271 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 334455789999999998876643 22211 223333333332 46788999999999944 466555543
Q ss_pred H-HHHHHHcCCHHHHHHHHHhCC------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHH-HHHHH
Q 043124 184 M-VDLLSKAGLLEDALELIRSSK------FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL-LNMYA 255 (331)
Q Consensus 184 l-~~~~~~~~~~~~a~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~ 255 (331)
. .+.+...|++++|++.|++.. -+.....+.-+...+....++++|.+.+.++.+....+..+|..+ +.++.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3 455678999999999999632 122334555666678889999999999999999777766666544 55667
Q ss_pred hcCCc-------hHHHHHHHHHHhcC
Q 043124 256 EVSRW-------AEVTKIRVAMKELG 274 (331)
Q Consensus 256 ~~g~~-------~~a~~~~~~m~~~~ 274 (331)
..|+. ++|..++++.....
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHHH
Confidence 78888 88999999886543
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.04 Score=47.44 Aligned_cols=63 Identities=3% Similarity=-0.213 Sum_probs=38.4
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc-h---hHHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-V---YIGSALVDMYAKCGSLDRSLLVFFKLRE 104 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 104 (331)
+...++.+..+|...|++++|+..|++.++.. |+ . .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666666666666666666653 22 2 2366666666666666666666665544
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.028 Score=47.25 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHh-CCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 179 EHYGCMVDLLSKAGLLEDALELIRS-SKF-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~a~~~~~~-~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
.++..+.-++.+.+++.+|+...++ +.. ++|+.....=..++...|+++.|...|++++++.|+|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3567788889999999999998876 333 45677777778889999999999999999999999998888888888777
Q ss_pred cCCchHH-HHHHHHHHhc
Q 043124 257 VSRWAEV-TKIRVAMKEL 273 (331)
Q Consensus 257 ~g~~~~a-~~~~~~m~~~ 273 (331)
...+.+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666554 7788888643
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.70 E-value=0.12 Score=36.45 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=84.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
.-.|..++..++..+.... .+..-+|.+|.-....-+-+-..++++.+-+-+++ ...|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3457777777777776654 24444555555545555555555666555533322 234455555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 043124 198 LELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 198 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 277 (331)
...+-.++ .+.......+.++...|+-+.-.++.+.+.+..-.++.+...+..+|.+.|+..++.+++++.-+.|++.
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kE 153 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLKE 153 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHH
Confidence 55555544 3444556677788899999999999999886444447777889999999999999999999999988753
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.68 E-value=0.12 Score=44.30 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC--CChhh-HHHHHHHHH
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIG-FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFC-WNSIIEGLA 118 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~li~~~~ 118 (331)
.|...++.-.+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+--.. +|... -+..+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444444444444445555554444444 3344444444444443 2344444444443221 22222 122333444
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 119 VHGFAHEALAMFDRMIYENVEPN--GVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..++-+.|..+|+..+.. +..+ ...|..+|..-..-|+...+..+=+++.
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 444444555555433322 1111 2334444444444455544444444444
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.64 E-value=0.11 Score=45.53 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=104.0
Q ss_pred HHHHhCCChhHHHHHHH--HHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 14 TCYSQNKQFREALDAFN--EMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
+...-.++++++.+..+ ++.. .+ .....+.+++-+.+.|..+.|+++.. |.. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455678888776664 2221 12 24457788888888898888888742 221 23456678899
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc
Q 043124 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171 (331)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (331)
++.|.++.++.. +...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877665 566899999999999999999999988643 445666677788887777777666622
Q ss_pred CCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 043124 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP 208 (331)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p 208 (331)
| -++.-..++.-.|+.++..+++.+.+..|
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 2 24555666777788888888888877444
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.62 E-value=0.056 Score=44.90 Aligned_cols=222 Identities=14% Similarity=0.014 Sum_probs=93.8
Q ss_pred HhCCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCCchHHHHHHH-HH---HHhC-CCCchhHHHHHHHHHHhh
Q 043124 17 SQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALDLGREIHL-YV---MQIG-FDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~---~~~~-~~~~~~~~~~l~~~~~~~ 89 (331)
...++.++|+..+.+...+- ..---.+|..+..+.+..|.+++++..-- +| .+.. -..--..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666554431 01111344445555555555555443211 11 1110 000122333444444444
Q ss_pred CCHHHHHHHHhhcCC-C-------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhccC
Q 043124 90 GSLDRSLLVFFKLRE-K-------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-----VEPNGVTFISVLSACTHAG 156 (331)
Q Consensus 90 g~~~~a~~~~~~~~~-~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~ 156 (331)
-++.+++.+-..-.. | .-...-++..++...+.++++++.|+...+.- .......+..|...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 444444443332211 1 11223334555555556666666666554321 1112234555556666666
Q ss_pred cHHHHHHHHHhhhh---cCCCCCcHhHHHH-----HHHHHHHcCCHHHHHHHHHh-------CCCCCc-HHHHHHHHHHH
Q 043124 157 LVEEGRRRFLSMTC---GYSITPEVEHYGC-----MVDLLSKAGLLEDALELIRS-------SKFQPN-AVIWGALLGGC 220 (331)
Q Consensus 157 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~-------~~~~p~-~~~~~~l~~~~ 220 (331)
|+++|..+..+..+ ..++.--..-|.. +.-++...|....|.+..++ +|-+|. ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66666555544331 1221111111221 22234445555555444443 222221 22233444445
Q ss_pred hhcCCHHHHHHHHHHHHh
Q 043124 221 KLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~ 238 (331)
...|+.+.|+.-++.+..
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 566666666666655544
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.57 E-value=0.047 Score=38.74 Aligned_cols=82 Identities=9% Similarity=0.042 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNS---------------GISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
|..++.++|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567788888888888888888777655211 1345556666666666666666666666665544
Q ss_pred h-CCCCchhHHHHHHHHH
Q 043124 70 I-GFDIDVYIGSALVDMY 86 (331)
Q Consensus 70 ~-~~~~~~~~~~~l~~~~ 86 (331)
. +++.+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 3 4444555566555543
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=96.56 E-value=0.037 Score=40.78 Aligned_cols=86 Identities=9% Similarity=-0.032 Sum_probs=71.0
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhCCCHHH
Q 043124 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL---REKNLFCWNSIIEGLAVHGFAHE 125 (331)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~ 125 (331)
.-+...|++++|..+|.-+.-.++. +..-+..|..++-..+++++|...|... ...|+.++.....++...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3445789999999999988876533 5666788889999999999999998743 34577788888999999999999
Q ss_pred HHHHHHHHHH
Q 043124 126 ALAMFDRMIY 135 (331)
Q Consensus 126 a~~~~~~m~~ 135 (331)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.55 E-value=0.0062 Score=34.17 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
..+..+...|.+.|++++|.+++++..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3577899999999999999999999984
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.50 E-value=0.25 Score=38.21 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 107 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
+.+||-+.-.+...|+++.|.+.|+...+.+.. ...++..-.-++.-.|++.-|.+-+...-....-.|-...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 468899999999999999999999999887532 233332222234456888888877776663332223222332222
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCC
Q 043124 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN-------SGYCTLLLNMYAEVSR 259 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 259 (331)
-..-++.+|..-+.+.-...|..-|...|..+.- |++. .+.+++++.....++ ..+|..|..-+...|+
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2345677776665543334555566555555322 2211 123444444422232 3456778888999999
Q ss_pred chHHHHHHHHHHhcCC
Q 043124 260 WAEVTKIRVAMKELGI 275 (331)
Q Consensus 260 ~~~a~~~~~~m~~~~~ 275 (331)
.++|..+|+-....++
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999998776543
No 236
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.3 Score=44.41 Aligned_cols=206 Identities=13% Similarity=0.091 Sum_probs=112.5
Q ss_pred CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh-CCCCchhHHHHHH-------HHHHhhCCHHHHHHHHhhcCCCChhh
Q 043124 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQI-GFDIDVYIGSALV-------DMYAKCGSLDRSLLVFFKLREKNLFC 109 (331)
Q Consensus 38 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~~~~~~~~~~~ 109 (331)
.|.+..|..+.......-.++.|+..|-+.... |++. +.-...+. ..-+--|++++|+++|-++-++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh--
Confidence 466667777766666666666666666443321 2211 00111110 011112667777777766666553
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENV--EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (331)
.|..+.+.|+|-.+.++++.-- .+. ..-...++.+...+.....|++|.+.|..-. . ....+.+
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-~---------~e~~~ec 831 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-D---------TENQIEC 831 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---------hHhHHHH
Confidence 3556666777766665554311 010 1113456666677777777777777766544 1 1334566
Q ss_pred HHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 043124 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
+.+..++++-..+.+.++ -+....-.+...+.+.|--++|.+.+-+- ..|. .-+..|...++|.+|.++-
T Consensus 832 ly~le~f~~LE~la~~Lp--e~s~llp~~a~mf~svGMC~qAV~a~Lr~--s~pk------aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLP--EDSELLPVMADMFTSVGMCDQAVEAYLRR--SLPK------AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHhhhhHHHHHHhcC--cccchHHHHHHHHHhhchHHHHHHHHHhc--cCcH------HHHHHHHHHHHHHHHHHHH
Confidence 666666666555555554 23344455666677777777776655322 2232 2455677777787777776
Q ss_pred HHH
Q 043124 268 VAM 270 (331)
Q Consensus 268 ~~m 270 (331)
++.
T Consensus 902 q~~ 904 (1189)
T KOG2041|consen 902 QRF 904 (1189)
T ss_pred Hhc
Confidence 654
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.28 E-value=0.22 Score=35.91 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=42.9
Q ss_pred HHHHHHcCCHHHHHHHHHhCC----CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 185 VDLLSKAGLLEDALELIRSSK----FQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
.....+.|++++|.+.|+.+. ..| ....-..|+.++.+.++++.|...+++.++++|.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 444567788888888877652 122 34555667777888888888888888888877766543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.051 Score=43.43 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC---CCCcchHHHHH
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSS-KFQP----NAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLLL 251 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~ 251 (331)
.|+.-+ .+...|++..|..-|..- .--| ....+..|..++...|+++.|..+|..+.+.. |.-+..+.-|.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455433 344556677777666642 1112 22344556777777777777777777777743 33445566677
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 043124 252 NMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 252 ~~~~~~g~~~~a~~~~~~m~~ 272 (331)
....+.|+.++|...|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 777777777777777777664
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.18 E-value=0.092 Score=44.45 Aligned_cols=231 Identities=10% Similarity=0.003 Sum_probs=142.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHH--HH--CCC-CCCHhhHHHHHHHHHccCCchHHHHHHHHH----HHhCCC-Cchh
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEM--KN--SGI-SPDQVTMATVLSACAHLGALDLGREIHLYV----MQIGFD-IDVY 77 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m--~~--~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~ 77 (331)
.|.-|..+|.-.+++++|++.-..= +. .|- .-...+...|.+.+-..|.+++|.-....- .+.|-. ....
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 4677777788888888888764211 11 110 112234445666666678888876654322 222211 1233
Q ss_pred HHHHHHHHHHhhCC--------------------HHHHHHHHhhcCC-------C--ChhhHHHHHHHHHhCCCHHHHHH
Q 043124 78 IGSALVDMYAKCGS--------------------LDRSLLVFFKLRE-------K--NLFCWNSIIEGLAVHGFAHEALA 128 (331)
Q Consensus 78 ~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~ 128 (331)
.+-.+.+.|...|+ ++.|.++|.+=.+ + .-.+|..|...|.-.|+++.|+.
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 44457777766553 2333344432111 0 22467777777778899999987
Q ss_pred HHHHHH----HcCCC-CcHHHHHHHHHHHhccCcHHHHHHHHHhhhh----cCCCCCcHhHHHHHHHHHHHcCCHHHHHH
Q 043124 129 MFDRMI----YENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTC----GYSITPEVEHYGCMVDLLSKAGLLEDALE 199 (331)
Q Consensus 129 ~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 199 (331)
.-+.-+ +-|-. .-...+..+..++.-.|+++.|.+.|+.... -..-.....+.-+|...|.-..++++|+.
T Consensus 217 ~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 217 FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 765432 22311 2345677788899999999999998887441 11112234455567788888889999988
Q ss_pred HHHh-------CC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 200 LIRS-------SK-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 200 ~~~~-------~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.+.+ ++ ..-....+.+|..++...|.-++|..+.+..++
T Consensus 297 Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8753 22 223567888999999999999999998888766
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.13 E-value=0.33 Score=35.24 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
...++..+...+.+......++.+...+ +.+...++.++..|++.+. ......+.. ..+.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 4455666666667777777777776665 3556666777777765432 333333332 011222334566666
Q ss_pred HcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 190 KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH-RNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
+.+.++++..++.+++... ..+..+... ++.+.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6777777777777666221 122222333 667777666654 233445555555544
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.09 E-value=0.078 Score=42.55 Aligned_cols=98 Identities=9% Similarity=0.047 Sum_probs=68.2
Q ss_pred HHHhhcC--CCChhhHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc--------------
Q 043124 97 LVFFKLR--EKNLFCWNSIIEGLAVH-----GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA-------------- 155 (331)
Q Consensus 97 ~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------------- 155 (331)
+.|.... ++|-.+|-..+..+... +..+-....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 44556666666655432 44566666777788888888888888888776443
Q ss_pred --CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHH
Q 043124 156 --GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195 (331)
Q Consensus 156 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (331)
.+-+-++.++++|. .+|+.||-.+-..|+.++.+.+-.-
T Consensus 135 YP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred CchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 23356788889998 8899999888888888888877543
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.09 E-value=0.55 Score=37.42 Aligned_cols=158 Identities=15% Similarity=0.045 Sum_probs=85.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH--
Q 043124 115 EGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK-- 190 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 190 (331)
....+.|++++|.+.|+.+.... -+-...+...++-++.+.++++.|....++..+.++-.|+. -|...|.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhc
Confidence 33445566666666666655431 11123344444555556666666666666655444444432 22223333321
Q ss_pred -----cCCHHHHHHHHHhC-------C---CCCcHHH----------H--HHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 191 -----AGLLEDALELIRSS-------K---FQPNAVI----------W--GALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 191 -----~~~~~~a~~~~~~~-------~---~~p~~~~----------~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
..+...+..-+..+ + ..||... . ..+.+-|.+.|.+..|..-++++++.-|+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 12222222222211 1 2222221 1 234445889999999999999999976665
Q ss_pred cch---HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 244 SGY---CTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 244 ~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
... +..+..+|...|..++|...-+-+..+
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 544 455778899999999998877665543
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.01 E-value=0.9 Score=39.29 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=84.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHhhhhcCC-CCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcHHHH-HHHHHHH
Q 043124 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNAVIW-GALLGGC 220 (331)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~~~~-~~l~~~~ 220 (331)
.|...+.+..+..-.+.|..+|-+.. +.+ +.+++..+++++..++ .|+..-|..+|+- +..-||...| +..+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34455666666777788888888888 445 5667778888776554 5677778888774 3334554433 4555556
Q ss_pred hhcCCHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 221 KLHRNLEIAHIAVNELMILEP--NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...++-+.|..+|+..++.-. .-...|..++.--..-|+...+..+-++|.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777888888888887665221 22456777777777778877777666666543
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.97 E-value=0.36 Score=40.36 Aligned_cols=216 Identities=11% Similarity=0.016 Sum_probs=91.0
Q ss_pred ccCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHHHHHHH-------hhcCCC--ChhhHHHHHHHHHhCC
Q 043124 53 HLGALDLGREIHLYVMQIG--FDIDVYIGSALVDMYAKCGSLDRSLLVF-------FKLREK--NLFCWNSIIEGLAVHG 121 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~-------~~~~~~--~~~~~~~li~~~~~~~ 121 (331)
.+.+.++++..|.+.+..- ....-.++..+..+..+.|.+++++..- .+..+. -..+|..+..++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443320 0111234444555555555555544321 111111 1134445555555555
Q ss_pred CHHHHHHHHHHHHHc-CCCC---cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC----CCCCcHhHHHHHHHHHHHcCC
Q 043124 122 FAHEALAMFDRMIYE-NVEP---NGVTFISVLSACTHAGLVEEGRRRFLSMTCGY----SITPEVEHYGCMVDLLSKAGL 193 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 193 (331)
++.+++.+-..-... |..| ......++..++...+.++++.+.|+...+-. +......++..|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555444433222 1111 11222234455555555555555555543211 111223455555555666666
Q ss_pred HHHHHHHHHh-------CCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHh--cC----CCCcchHHHHHHHHH
Q 043124 194 LEDALELIRS-------SKFQPNA-----VIWGALLGGCKLHRNLEIAHIAVNELMI--LE----PNNSGYCTLLLNMYA 255 (331)
Q Consensus 194 ~~~a~~~~~~-------~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----p~~~~~~~~l~~~~~ 255 (331)
+++|.-+..+ .++..-. .....+..++...|....|.+..+++.+ +. |........+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 5555443321 2211111 1122233345555555555555555544 11 222222334555555
Q ss_pred hcCCchHHHHHHH
Q 043124 256 EVSRWAEVTKIRV 268 (331)
Q Consensus 256 ~~g~~~~a~~~~~ 268 (331)
..|+.+.|+.-|+
T Consensus 258 ~~gd~e~af~rYe 270 (518)
T KOG1941|consen 258 SRGDLERAFRRYE 270 (518)
T ss_pred hcccHhHHHHHHH
Confidence 6666555554444
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.96 E-value=0.57 Score=36.59 Aligned_cols=193 Identities=20% Similarity=0.108 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-
Q 043124 77 YIGSALVDMYAKCGSLDRSLLVFFKLRE-----KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS- 150 (331)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~- 150 (331)
.........+...+++..+...+..... .....+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444444555555555555554444321 123344444445555555555555555555432222 111111112
Q ss_pred HHhccCcHHHHHHHHHhhhhcCCC--CCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc--HHHHHHHHHHHhhcCC
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGYSI--TPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN--AVIWGALLGGCKLHRN 225 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 225 (331)
.+...|+++.|...+..... ... ......+......+...++.+.+...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45555555555555555541 110 011222222233344455555555555542 22222 3444444555555555
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 226 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
++.+...+.......|.....+..+...+...|.++.+...+.+..
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666665555433333444444444455555555555544
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.95 E-value=0.97 Score=39.11 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHH-c---cCCchHHHHHHHHHHHhCCCC
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATV-------LSACA-H---LGALDLGREIHLYVMQIGFDI 74 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------~~~~~-~---~~~~~~a~~~~~~~~~~~~~~ 74 (331)
+.+|..++....+.++..+|.+.+.-+... .|+...-.-+ -+..+ . .-+...-+.+|+.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 346788888888888888888888766654 3443321111 11121 1 112223345555555544332
Q ss_pred chhHHHHHHH---HHHhhCC-HHHHHHHHhhcCC---CChhhHHHHHH----HHH---hCCCHHHHHHHHHHHHHcCCCC
Q 043124 75 DVYIGSALVD---MYAKCGS-LDRSLLVFFKLRE---KNLFCWNSIIE----GLA---VHGFAHEALAMFDRMIYENVEP 140 (331)
Q Consensus 75 ~~~~~~~l~~---~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~li~----~~~---~~~~~~~a~~~~~~m~~~~~~p 140 (331)
.. .-.-|+. -+.+.|. -++|..+++.+.+ .|..+-|.+.. .|. ......+-+.+-+-+.+.|++|
T Consensus 376 qQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 21 1122222 2444455 6777777776653 24433332221 111 1233444555555555667665
Q ss_pred cHH----HHHHHH--HHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHH
Q 043124 141 NGV----TFISVL--SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG 214 (331)
Q Consensus 141 ~~~----~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~ 214 (331)
-.. .-|.|. ..+...|++.++...-..+. .+.|++.+|..+.-++....++++|.+++..++ |+..+++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 332 222222 23456677777765544444 457788888877777778888888888888776 4555554
Q ss_pred H
Q 043124 215 A 215 (331)
Q Consensus 215 ~ 215 (331)
.
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 3
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.71 Score=40.72 Aligned_cols=135 Identities=15% Similarity=0.044 Sum_probs=100.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
....+.++..+-+.|..+.|+++- .|+. .-.....+.|+++.|.++.++ .++...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 344788889999999999998763 2433 234556678999999887542 3467799999999
Q ss_pred HHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
..+.|+++-|++.|++... +..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++
T Consensus 357 AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999875 77788888899999888888888777762 444555566678888888888
Q ss_pred Hhhh
Q 043124 166 LSMT 169 (331)
Q Consensus 166 ~~~~ 169 (331)
.+..
T Consensus 426 ~~~~ 429 (443)
T PF04053_consen 426 IETG 429 (443)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7654
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.098 Score=41.85 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=37.3
Q ss_pred hCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C-CCcHHHHHHHHHHHhccCcHHH
Q 043124 89 CGSLDRSLLVFFKLREK------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-V-EPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
.|++..|...|....+. ...++.-|..++...|++++|..+|..+.+.- - +--+..+..|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555544431 12234445555555555555555555544431 0 1112334444444455555555
Q ss_pred HHHHHHhhhh
Q 043124 161 GRRRFLSMTC 170 (331)
Q Consensus 161 a~~~~~~~~~ 170 (331)
|..+|+++.+
T Consensus 234 A~atl~qv~k 243 (262)
T COG1729 234 ACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHH
Confidence 5555555553
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.78 E-value=0.078 Score=43.02 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCC
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE-----LGIEKR 278 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 278 (331)
.++..++..+...|+.+.+...+++....+|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 45667788888889999999999999999999999999999999999999999999988755 556655
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.76 E-value=0.7 Score=36.05 Aligned_cols=222 Identities=17% Similarity=0.064 Sum_probs=158.7
Q ss_pred CCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCCchHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhhCCHHHHH
Q 043124 19 NKQFREALDAFNEMKNSGIS-PDQVTMATVLSACAHLGALDLGREIHLYVMQI-GFDIDVYIGSALVDMYAKCGSLDRSL 96 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 96 (331)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666655322 13567777778888899999999988887763 23445667777888888889999999
Q ss_pred HHHhhcCCC--C-hhhHHHHHH-HHHhCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccCcHHHHHHHHHhhhh
Q 043124 97 LVFFKLREK--N-LFCWNSIIE-GLAVHGFAHEALAMFDRMIYENV--EPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170 (331)
Q Consensus 97 ~~~~~~~~~--~-~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (331)
+.+...... + ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999887753 2 223344444 78899999999999999866321 12334444445556788999999999999883
Q ss_pred cCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 171 GYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 171 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
.. .. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 32 23 3667788888899999999999998864 34454 445555555555777899999999999998887
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.42 Score=39.57 Aligned_cols=148 Identities=9% Similarity=0.008 Sum_probs=80.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhhCCHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI---GFDIDVYIGSALVDMYAKCGSLDRS 95 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 95 (331)
+|++.+|-..++++.+. .+.|...+...=.+|.-.|+...-...++++... ++|-...+...+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555565666666654 3445555555555666666666666666655443 2222233344444455566777777
Q ss_pred HHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhccCcHHHHHHHHHh
Q 043124 96 LLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV---EPNGVTFISVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 167 (331)
++.-++..+- |.-+..++...+-..|++.++.+...+-...-- ..-...|-...-.+...+.++.|..+|+.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 7766655543 444555566666666777777766655432210 01112233333345555777777777665
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.70 E-value=0.03 Score=29.12 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
.+|..+..++...|++++|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666667777777777777777777777775
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.70 E-value=0.95 Score=37.59 Aligned_cols=126 Identities=10% Similarity=0.125 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--h----CCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhCCC-
Q 043124 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAK--C----GSLDRSLLVFFKLREK-------NLFCWNSIIEGLAVHGF- 122 (331)
Q Consensus 57 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~- 122 (331)
++....+++.+.+.|+.-+..++-+..-.... . ....+|.++|+.|++. +-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788889999998887766653333332 1 2356788999999863 33455555443 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCc--HHHHHHHHHhhhhcCCCCCcHhHHHHHH
Q 043124 123 ---AHEALAMFDRMIYENVEPNG--VTFISVLSACTHAGL--VEEGRRRFLSMTCGYSITPEVEHYGCMV 185 (331)
Q Consensus 123 ---~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 185 (331)
.+.++.+|+.+.+.|+..+. .....++..+..... ...+..+++.+. +.++++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHH
Confidence 46778888888888866543 333334433333322 347888888888 668888887777554
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.67 E-value=0.044 Score=28.39 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
.+..+...+...|++++|.+.+++++++.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 44556666777777777777777777777653
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.2 Score=38.08 Aligned_cols=148 Identities=10% Similarity=-0.004 Sum_probs=69.4
Q ss_pred HccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCCh---------------hhHHHHHHH
Q 043124 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL---------------FCWNSIIEG 116 (331)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------------~~~~~li~~ 116 (331)
...|+.++|.++--..++.. ..+....-.-..++.-.++.+.|...|++-...++ ..+..-.+-
T Consensus 180 ~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 44555555555554444432 11222222222233344555555555555543221 123333444
Q ss_pred HHhCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcC
Q 043124 117 LAVHGFAHEALAMFDRMIYEN---VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAG 192 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 192 (331)
..+.|++..|.+.|.+.+... +.|+...|........+.|+.++|+.--++.. .+.++ +..|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655432 33444455555555556666666666555555 12222 222222233444556
Q ss_pred CHHHHHHHHHh
Q 043124 193 LLEDALELIRS 203 (331)
Q Consensus 193 ~~~~a~~~~~~ 203 (331)
+|++|.+-+++
T Consensus 336 ~~e~AV~d~~~ 346 (486)
T KOG0550|consen 336 KWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHHHH
Confidence 66666555553
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.76 Score=38.14 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHh--HHHHHH--HHHHHcCCHH
Q 043124 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE--HYGCMV--DLLSKAGLLE 195 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~--~~~~~~~~~~ 195 (331)
.|++.+|-..++++.+. .|.|...+...=.+|.-.|+.+.-...++++... ..++.. +|..=| -++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444455554443 3444444444444455555554444444444411 122221 111111 1223445555
Q ss_pred HHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 196 DALELIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 196 ~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
+|.+.-++ +.++| |...-.++...+-..++.+++.+++.+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55554443 22222 3333344444444455555555544443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.63 E-value=0.56 Score=34.01 Aligned_cols=43 Identities=7% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH 53 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 53 (331)
..++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344455554555555555555554443 2344444555555543
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=95.61 E-value=0.45 Score=41.36 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=89.5
Q ss_pred HHH--HHHHHHHhc-----cCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHc---------CCHHHHHHHHHh-C
Q 043124 143 VTF--ISVLSACTH-----AGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKA---------GLLEDALELIRS-S 204 (331)
Q Consensus 143 ~~~--~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~-~ 204 (331)
..| ...+++... ..+.+.|..+|.+......+.|+ ...|..+..++... ....+|.+..+. .
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 445555443 23456788899988855556665 44444444433221 223344444443 2
Q ss_pred CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 205 KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 205 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...| |......+..+....++++.|...|+++..++|+....|........-.|+.++|.+.+++..+.
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 3344 56666666666777888999999999999999999999998999999999999999999986544
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.58 E-value=0.34 Score=34.17 Aligned_cols=88 Identities=16% Similarity=-0.028 Sum_probs=65.2
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC----C---hhhHHHHHHHHHhCC
Q 043124 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK----N---LFCWNSIIEGLAVHG 121 (331)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~~li~~~~~~~ 121 (331)
.+.+..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+- + -.+|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35667888888888888888763 457788888888888888888888777765531 1 124555566677788
Q ss_pred CHHHHHHHHHHHHHcC
Q 043124 122 FAHEALAMFDRMIYEN 137 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~ 137 (331)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888887776
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.51 E-value=1.2 Score=36.82 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=29.5
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH-------HHHccC-CchHHHHHHHHHHH
Q 043124 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLS-------ACAHLG-ALDLGREIHLYVMQ 69 (331)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-------~~~~~~-~~~~a~~~~~~~~~ 69 (331)
.+.|+++.|..++.+........++.....|.. .....+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 467888889888888766431223222222222 223344 67777666665544
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.35 E-value=0.57 Score=35.59 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPN--GVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+..+...|++.|+.+.|++.|.++.+....+. ...+..+|+.....+++..+.....+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444445555555555555555444322222 1222334444444555555444444433
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=1.6 Score=40.76 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=11.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhc
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~ 102 (331)
+.|+.+|.+.++.++-.++.+..
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcC
Confidence 34455555555555544444443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=0.94 Score=33.83 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHh-HHHHH--
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV-TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVE-HYGCM-- 184 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l-- 184 (331)
.|..-+. +.+.+..++|+..|..+.+.|...-+. ...-........|+...|...|+++-.... .|.+. -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHH
Confidence 4443333 456677788888888887776432221 111233445677788888888888774332 22221 11111
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 185 VDLLSKAGLLEDALELIRSSKFQPN---AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.-.+..+|.++......+.+...-+ ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1234567777777666665432111 12223444445677777777777777665
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.99 E-value=0.21 Score=35.17 Aligned_cols=88 Identities=22% Similarity=0.166 Sum_probs=62.8
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCcc---hHHHHHHHHHhcCCc
Q 043124 187 LLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL-EPNNSG---YCTLLLNMYAEVSRW 260 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~---~~~~l~~~~~~~g~~ 260 (331)
++...|+.+.|++.|.+. .+-| ....||.=..++.-.|+.++|.+=+++++++ +|...+ .|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888888763 3333 5677888888888888888888888888873 344332 244456677788888
Q ss_pred hHHHHHHHHHHhcC
Q 043124 261 AEVTKIRVAMKELG 274 (331)
Q Consensus 261 ~~a~~~~~~m~~~~ 274 (331)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877666
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.84 E-value=0.94 Score=32.13 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhhCCHH
Q 043124 17 SQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIG---SALVDMYAKCGSLD 93 (331)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~ 93 (331)
.-.|..++..++..+..+.. +..-+|-++--....-+-+-..++++. .|---|...+ ...+.+|++.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCchhhcchHHHHHHHHHhcchH
Confidence 34566666666666665532 333344343333333344444333333 2221222221 22344444444332
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC
Q 043124 94 RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173 (331)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (331)
......+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++..++++.- +.|
T Consensus 87 --------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG 150 (161)
T PF09205_consen 87 --------------EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC-EKG 150 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT
T ss_pred --------------HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhc
Confidence 234456677788888888888888887643 6777777888888888888888888888876 445
Q ss_pred C
Q 043124 174 I 174 (331)
Q Consensus 174 ~ 174 (331)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.84 E-value=0.078 Score=28.07 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEM 32 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m 32 (331)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666666666666666653
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=1.9 Score=35.27 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=82.9
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCC-hhhH---HHHHHHHHhCCCHHH
Q 043124 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN-LFCW---NSIIEGLAVHGFAHE 125 (331)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~---~~li~~~~~~~~~~~ 125 (331)
.....|++..|...|+...... +-+..+-..+..+|...|+.+.|..++..+.... ...+ ..-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4557788888888888888774 3356666778889999999999999998886431 1112 223344444444433
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC
Q 043124 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192 (331)
Q Consensus 126 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (331)
...+-.+.-+. +-|...-..+...+...|+.+.|...+-.+.++..-.-+...-..++..+...|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333221 225555555667777778888777666555533222233344445555444433
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.74 E-value=0.67 Score=35.23 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=35.1
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDID--VYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
.+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+++...-.|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455666666666666666666666655533322 2344455666666666666665555443
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.09 Score=27.83 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMI 134 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~ 134 (331)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666677777777777766643
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=1.7 Score=34.45 Aligned_cols=203 Identities=12% Similarity=0.116 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA 87 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (331)
.|..-..+|...+++++|-..+.+..+. .+.+...|.. ...++.|.-+.+++.+. .--+..++.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3555566777788888888877776542 2333332221 12233444444444432 122344555566677
Q ss_pred hhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---C--CCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE---N--VEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
..|..+-|-..+++.-+ ....-++++|+++|++.... + ..--...+..+-+.+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 77776666555544321 12344566666666654321 1 0111233444555666666666665
Q ss_pred HHHHhhhh---cCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHh---CC--CC-CcHHHHHHHHHHHhhcCCHHHHHHH
Q 043124 163 RRFLSMTC---GYSITPE-VEHYGCMVDLLSKAGLLEDALELIRS---SK--FQ-PNAVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 163 ~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~---~~--~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
..+.+-.. ...-.++ ...|...|-.+.-..++..|..+++. ++ .. -+..+...|+.+| ..||.+++.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 54443220 1111223 24456666667777788888888876 33 22 2466777777776 46777777665
Q ss_pred H
Q 043124 233 V 233 (331)
Q Consensus 233 ~ 233 (331)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=94.66 E-value=2.8 Score=36.70 Aligned_cols=113 Identities=9% Similarity=-0.055 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHh-CCCCc-hhHHHHHHHHHHhh---------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCC
Q 043124 56 ALDLGREIHLYVMQI-GFDID-VYIGSALVDMYAKC---------GSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHG 121 (331)
Q Consensus 56 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 121 (331)
+.+.|..+|.+.... ...|+ ...|..+..++... ....+|.++-++..+ .|..+...+..++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 446677778777722 22333 44454444443321 223344444444332 35556666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+++.|...|++....+ |-...+|......+.-.|+.++|.+.+++..
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6777777777776653 2234444444445556677777777777755
No 272
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.63 E-value=0.33 Score=32.46 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 123 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
.-+..+-++.+...++.|++....+.+++|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34677777777778888999999999999999999999999999998665533 336776654
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=4 Score=38.31 Aligned_cols=214 Identities=12% Similarity=0.047 Sum_probs=131.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH----CC------------CCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhC
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKN----SG------------ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 71 (331)
+.|.++.+|...+.+-.-.-++.+... .+ ..........-+....+...++.|+.+- +..+
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LA---k~~~ 361 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLA---KSQH 361 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHH---HhcC
Confidence 456777777777776554444443322 12 0112233455666677777777776653 3444
Q ss_pred CCCc--hhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 043124 72 FDID--VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149 (331)
Q Consensus 72 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 149 (331)
..++ ..++....+.+.+.|++++|...|-+-...-.. ..+|.-|.......+-..+++.+.+.|+. +...-..|+
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLL 438 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLL 438 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHH
Confidence 3333 234455566677889999998887655432111 12455566667777888888888888864 445556688
Q ss_pred HHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHH
Q 043124 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 229 (331)
.+|.+.++.+.-.++.+... +.-+.-| ....+..+.+.+-.++|..+-.+.+. +......+ +-..+++++|
T Consensus 439 ncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~il---le~~~ny~eA 509 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDIL---LEDLHNYEEA 509 (933)
T ss_pred HHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHH---HHHhcCHHHH
Confidence 99999999988777766654 2111112 34456667777788888777776653 33333333 3467889999
Q ss_pred HHHHHHH
Q 043124 230 HIAVNEL 236 (331)
Q Consensus 230 ~~~~~~~ 236 (331)
.+++..+
T Consensus 510 l~yi~sl 516 (933)
T KOG2114|consen 510 LRYISSL 516 (933)
T ss_pred HHHHhcC
Confidence 9887664
No 274
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.60 E-value=0.5 Score=38.49 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhh----cCCCCCcHhHHHH
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC----GYSITPEVEHYGC 183 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 183 (331)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456777788888888888888888888874 66788888888888888888888888887663 4577777776665
Q ss_pred HHHH
Q 043124 184 MVDL 187 (331)
Q Consensus 184 l~~~ 187 (331)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.57 E-value=0.63 Score=34.30 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=33.9
Q ss_pred HHcCCHHHHHHHHHhCC-CCCcHHHHHHHH-HHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 189 SKAGLLEDALELIRSSK-FQPNAVIWGALL-GGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~~~-~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
.+.++.+++..++..+. +.|.......+- ..+...|++.+|.++|+++.+..|..+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~ 80 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYA 80 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHH
Confidence 45667777777776653 445433332222 12566777777777777766666654444
No 276
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.48 E-value=0.85 Score=32.44 Aligned_cols=91 Identities=9% Similarity=0.103 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHHHhhcCC---HHHHHHHHHHHHh-cCCCCc-chHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCc
Q 043124 207 QPNAVIWGALLGGCKLHRN---LEIAHIAVNELMI-LEPNNS-GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPG 281 (331)
Q Consensus 207 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 281 (331)
.++..+--.+..++++..+ ..+...++++..+ -.|... .....|.-++.+.++++.++++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--------- 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--------- 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh---------
Confidence 4555555566666665544 5566778888876 445432 2334577788889999999999888873
Q ss_pred cceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCcc
Q 043124 282 SSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYV 324 (331)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~ 324 (331)
..|++.++...=..+++.|.+.|++
T Consensus 100 ------------------~e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 100 ------------------TEPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ------------------hCCCcHHHHHHHHHHHHHHhhccee
Confidence 4577778887777888888887754
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.44 E-value=0.25 Score=28.89 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCc
Q 043124 248 TLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASY 323 (331)
Q Consensus 248 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~ 323 (331)
..+..++.+.|++++|.+..+.+.+ .+|++..+......+-+.+.+.|+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~---------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE---------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH---------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh---------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 4577889999999999999999984 468899999988889888888874
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.43 E-value=0.095 Score=38.23 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=55.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG 90 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 90 (331)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++. .+..-...+++.+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666777778888888888888766556677778888888888777777776651 11122334566666667
Q ss_pred CHHHHHHHHhhcC
Q 043124 91 SLDRSLLVFFKLR 103 (331)
Q Consensus 91 ~~~~a~~~~~~~~ 103 (331)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777666666554
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.36 E-value=0.12 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
+|..+...+...|++++|.+.|++.++..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555566677777777777777777776663
No 280
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.36 E-value=1.4 Score=31.89 Aligned_cols=77 Identities=6% Similarity=-0.081 Sum_probs=47.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGI--SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (331)
.....+.|++++|.+.|+.+...-. +-....--.|+.++.+.++++.|...++..++........-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444567778888888877776521 1133445566777777888888888887777765433334455555554443
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.28 E-value=2.6 Score=34.76 Aligned_cols=215 Identities=10% Similarity=0.010 Sum_probs=117.9
Q ss_pred HccCCchHHHHHHHHHHHhC--CCCchh------HHHHHHHHHHhhC-CHHHHHHHHhhcC----------C--CC----
Q 043124 52 AHLGALDLGREIHLYVMQIG--FDIDVY------IGSALVDMYAKCG-SLDRSLLVFFKLR----------E--KN---- 106 (331)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~g-~~~~a~~~~~~~~----------~--~~---- 106 (331)
.+.|+.+.|..++.++.... ..|+.. .|+. .....+.+ +++.|...+++.. + ++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999998887643 233321 2322 23334455 8777766654332 1 22
Q ss_pred -hhhHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHH
Q 043124 107 -LFCWNSIIEGLAVHGFAH---EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG 182 (331)
Q Consensus 107 -~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (331)
..+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+.+.+.+.+|....+ -....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHH
Confidence 246788888998887755 5666666665442 22345555567777779999999999999994433 1223444
Q ss_pred HHHHHH---HHcCCHHHHHHHHHhC---CCCCcHH-HHH-HHHHH-H--hhcCC------HHHHHHHHHHHHh--cCCCC
Q 043124 183 CMVDLL---SKAGLLEDALELIRSS---KFQPNAV-IWG-ALLGG-C--KLHRN------LEIAHIAVNELMI--LEPNN 243 (331)
Q Consensus 183 ~l~~~~---~~~~~~~~a~~~~~~~---~~~p~~~-~~~-~l~~~-~--~~~~~------~~~a~~~~~~~~~--~~p~~ 243 (331)
.++..+ .... ...|...+..+ .+.|... ... .++.. + ...++ ++....++....+ ..|-+
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 444443 4333 34444444331 2333332 111 11111 1 12111 4445555554333 23333
Q ss_pred cchH---HHH----HHHHHhcCCchHHHHHHHHHH
Q 043124 244 SGYC---TLL----LNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 244 ~~~~---~~l----~~~~~~~g~~~~a~~~~~~m~ 271 (331)
..+- ..| +..+.+.++|+.|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 222 344667899999999998543
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.08 E-value=3.9 Score=36.08 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHH
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCM 184 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 184 (331)
.+-..+..++.+.|+.++|.+.|.+|.+.... -.......|+.++...+.+.++..++.+.. +...+.+ ...|+.-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd-Di~lpkSAti~YTaA 337 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD-DISLPKSATICYTAA 337 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc-cccCCchHHHHHHHH
Confidence 34455777778888899999988888765311 123345568888888888888888888865 3222222 4455543
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.07 E-value=6.5 Score=38.55 Aligned_cols=112 Identities=14% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
|.+....+...+.+++|.-.|+..-+ ....+.+|...|+|.+|..+..++.. +-.--..+-..|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHH
Confidence 33344444445555555555544321 12234555666666666666665541 10111122245666666
Q ss_pred HcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 190 KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
..+++-+|-++..+-.-.|.. .+..+++...+++|.++.....
T Consensus 1011 e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 677777776666654433322 2333455566777766665543
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.06 E-value=2.5 Score=33.79 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
.+.+.|.+.|.+..|..-++.|.+.+.-.+ .....-.+..+|...|-.++|.+.-+-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 355667777777777777777774321111 123344455667777777666555443
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.05 E-value=0.51 Score=31.26 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
+.-++.+-++.+...+..|++....+.+++|.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777788888888899999999999999999999999999988744432 3446665553
No 286
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.03 E-value=0.36 Score=36.87 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=59.7
Q ss_pred HHHhccCcHHHHHHHHHhhhhcCCCCCc---HhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcC
Q 043124 150 SACTHAGLVEEGRRRFLSMTCGYSITPE---VEHYGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHR 224 (331)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~ 224 (331)
.-+.+.|++++|..-|..........++ ...|..-..++.+.+.++.|++-..+ +.+.|+ ......-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3466778888888888877733211111 22344444556677777777665544 344453 222222233466777
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 225 NLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
.++.|..=+.++++.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 7788888888877777775544443333
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.00 E-value=0.13 Score=42.56 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=74.2
Q ss_pred HHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCcHHHHHHHHHHHhhcCCH
Q 043124 150 SACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS-KF-QPNAVIWGALLGGCKLHRNL 226 (331)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~ 226 (331)
..|.+.|.+++|+..|..-. .+.| +..++..-..+|.+.+.+..|..-.... .+ ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45889999999999999877 2345 7888888889999999998876655542 21 11234455555555567888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 043124 227 EIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263 (331)
Q Consensus 227 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 263 (331)
.+|.+=++..+++.|.+... -..+.+.....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL----KKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhh
Confidence 88888888889999995444 3344444444443
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.95 E-value=1.9 Score=31.90 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=51.8
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCcHHHHHHHHHHHhhcCCHHHHHH
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF-QPNAVIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~ 231 (331)
.+.++.+.+..++..+.--..-.+...++.. ..+...|++.+|..+|+++.- .|.......|+..|....+-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH
Confidence 4556777777777776621111122333332 335677777777777776542 2333333334433333222222223
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 265 (331)
+.+++++..++ +.. ..|+..+....+...|..
T Consensus 99 ~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 99 YADEVLESGAD-PDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHhcCCC-hHH-HHHHHHHHHhccccchhh
Confidence 33344444443 434 345555555555555444
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.93 E-value=3.6 Score=35.09 Aligned_cols=236 Identities=11% Similarity=0.028 Sum_probs=121.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCC---C-CchhHHHHHHHHHHh
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF---D-IDVYIGSALVDMYAK 88 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~l~~~~~~ 88 (331)
..+.-+.|+++...+........ .++...+..+... ..++.+++....+.+...-. . .....|........+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45677888998855555444432 2344455444433 77888888888877654311 0 011222222222333
Q ss_pred hCC---HHHHHHHHhhcCCCChh-------hHHHHHHHHHhCCC---HHHHHHHHHHHHH--cCCCCcHHHHHHHHHHHh
Q 043124 89 CGS---LDRSLLVFFKLREKNLF-------CWNSIIEGLAVHGF---AHEALAMFDRMIY--ENVEPNGVTFISVLSACT 153 (331)
Q Consensus 89 ~g~---~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~~~---~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~ 153 (331)
... ++++.++....... .. .|..-+... ..+ ++..+.+-..+.. ........++..++..+.
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 333 33333333222110 11 222222111 111 2222222222222 112344567778888888
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCC---cHhHHHHHHHHHHHcCCHHHHHHHHHhCC---CCC-------------------
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITP---EVEHYGCMVDLLSKAGLLEDALELIRSSK---FQP------------------- 208 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~p------------------- 208 (331)
+.|.++.|...+..+. ..+... .+.....-++.+-..|+..+|+..+++.- ...
T Consensus 158 k~g~~~~A~~~l~~~~-~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 158 KAGNFQLALSALNRLF-QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HCCCcHHHHHHHHHHh-ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 8999999988888877 322111 23344445667778888888877765321 000
Q ss_pred -------cH-------HHHHHHHHHHhhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 209 -------NA-------VIWGALLGGCKLH------RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 209 -------~~-------~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
+. ..+..+..-+... ++.+.+...|+.+....|.....|..+...+.+
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 1122222222233 677888888888888888777776666665544
No 290
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=2.5 Score=33.32 Aligned_cols=53 Identities=6% Similarity=-0.198 Sum_probs=30.1
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcch-------HHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGY-------CTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
-+..+++.+|.++|++.....-++... +..-+.++.-..+.-.+...+++..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 467789999999999987744333221 11112222223455556666666554
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.88 E-value=5.4 Score=39.05 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=38.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVT--FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (331)
+.+|...|+|.+|+.+-.++... -+... -..|+.-+...+++-+|-++..+.. . . ..--+..||+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~-s---d-----~~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL-S---D-----PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh-c---C-----HHHHHHHHhhH
Confidence 34455555555555555444211 11111 1335555556666666666655554 1 1 12233445666
Q ss_pred CCHHHHHHHHHhC
Q 043124 192 GLLEDALELIRSS 204 (331)
Q Consensus 192 ~~~~~a~~~~~~~ 204 (331)
..+++|+.+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 6666666665543
No 292
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=5.7 Score=36.88 Aligned_cols=103 Identities=12% Similarity=-0.052 Sum_probs=75.8
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
++.+.+..+++..-...+.+--+.-+...|+-.+|.++-.+.+ -||...|..-+.+++..+++++-+++-+....
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskks---- 743 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---- 743 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----
Confidence 3334444444444444455556667788899999999888887 58888998899999999999987776654422
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 243 NSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+.-|.-...+|.+.|+.++|..++-+..
T Consensus 744 -PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 744 -PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 4456778899999999999999987653
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.76 E-value=0.57 Score=33.95 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=31.1
Q ss_pred HcCCHHHHHHHHHhCC-CCCcHHHHHHHH-HHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 190 KAGLLEDALELIRSSK-FQPNAVIWGALL-GGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 190 ~~~~~~~a~~~~~~~~-~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
..++++++..++..+. +.|+..-...+- ..+...|++++|.++|++..+..|..+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 4667777777766653 344432222221 124567777777777777766555533
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.71 E-value=2.2 Score=31.91 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=73.7
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC--CHHHHHHHHhhcC
Q 043124 26 LDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG--SLDRSLLVFFKLR 103 (331)
Q Consensus 26 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 103 (331)
.+.++.+.+.+++|+...+..++..+.+.|.+... .+++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45556666778888888888888888888876443 34455555555554443332222211 1233444444443
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 104 EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 104 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..+..++..+...|++-+|++..+.....+ .++. ..++.+..+.+|...=..+|+-..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 245566677777888888888776643321 1122 234555555665554444444443
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.69 E-value=3.6 Score=34.26 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--c----CCchHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhhCC-
Q 043124 22 FREALDAFNEMKNSGISPDQVTMATVLSACAH--L----GALDLGREIHLYVMQIGF---DIDVYIGSALVDMYAKCGS- 91 (331)
Q Consensus 22 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 91 (331)
+++.+.+++.|.+.|.+-+..+|-+....... . ....++..+++.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677889999999998887777654443332 2 235678899999988642 2344455555433 3333
Q ss_pred ---HHHHHHHHhhcCC-----CCh-hhHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 043124 92 ---LDRSLLVFFKLRE-----KNL-FCWNSIIEGLAVHGF--AHEALAMFDRMIYENVEPNGVTFISVL 149 (331)
Q Consensus 92 ---~~~a~~~~~~~~~-----~~~-~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll 149 (331)
.+.++.+|+.+.+ .|. .....++...-.... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3456666666654 232 333333333322222 458899999999999998888777554
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.68 E-value=5.1 Score=36.07 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 151 (331)
+..+|+..++.-.+.|+.+.+.-.|++..-|-. ..|-..+......|+.+-|..++....+--++-++.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 467888889999999999999999999887633 45666667677779999999988887776544444443333334
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcH-hHHHHHHHHHHHcCCHHHHH---HHHHhCC---CCCcH--HHHHHHHHH-Hh
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEV-EHYGCMVDLLSKAGLLEDAL---ELIRSSK---FQPNA--VIWGALLGG-CK 221 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~---~~p~~--~~~~~l~~~-~~ 221 (331)
+-..|+++.|..+++.+..+. |+. ..-..-+....+.|+.+.+. .++.... ..+.. ..+....+- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 556789999999999999443 542 22222344566788888887 4444321 22221 122222222 45
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
-.++.+.|..++.++....|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999988877766
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.44 E-value=0.16 Score=26.45 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 043124 65 LYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL 96 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 96 (331)
++.++.. |-+..+|+.+..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 335666666666666666666664
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=3.2 Score=37.46 Aligned_cols=150 Identities=15% Similarity=0.057 Sum_probs=83.6
Q ss_pred HhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFL 166 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 166 (331)
.-.|+++.|..++..+.+ ...+.++..+-+.|..++|+++ .+|+... .....+.|+.+.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 345666666665555542 2344455556666666666543 2222211 122345677777777665
Q ss_pred hhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 167 SMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
+.. +..-|..|..+....+++..|.++|.+.. -|..|+-.+...|+-+....+-....+.+.++..
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 544 44567777777777788877777777543 1233444555556655554554444444444222
Q ss_pred HHHHHHHHHhcCCchHHHHHHHH
Q 043124 247 CTLLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 247 ~~~l~~~~~~~g~~~~a~~~~~~ 269 (331)
..+|...|+++++.+++.+
T Consensus 728 ----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHHh
Confidence 2355566777766666654
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.18 E-value=5.7 Score=35.12 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=66.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCc--HHHHHHHHHHHh
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-F-QPN--AVIWGALLGGCK 221 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-~p~--~~~~~~l~~~~~ 221 (331)
..+..++-+.|+.++|++.++++.+.............|+.++...+.+.++..++.+-. + -|. ...|+..+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 346667778999999999999998555333345677889999999999999999988643 1 233 345555443333
Q ss_pred hcCC---------------HHHHHHHHHHHHhcCCCC
Q 043124 222 LHRN---------------LEIAHIAVNELMILEPNN 243 (331)
Q Consensus 222 ~~~~---------------~~~a~~~~~~~~~~~p~~ 243 (331)
..++ -..|.+.+.++.+.+|-.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2222 123557777877766653
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.16 E-value=2.8 Score=31.40 Aligned_cols=137 Identities=9% Similarity=0.081 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc--CCHHHHHHHHHhC
Q 043124 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA--GLLEDALELIRSS 204 (331)
Q Consensus 127 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 204 (331)
.+.++.+.+.|++|+...+..++..+.+.|.+..-.+++. +++-+|.......+-.+... .-..-|++.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 4556666777888998999999999999998765444433 34455544333333222221 1134456667776
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 205 KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 205 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
+. .+..++..+...|++-+|.++.+.....+. ... ..++++-...++...-..+++-+.+++.+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~--~~~-~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS--VPA-RKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc--CCH-HHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 62 334566778889999999998877644321 122 45677777888877777777777665543
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.99 E-value=0.3 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
+++.|...|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555544
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.89 E-value=2 Score=33.03 Aligned_cols=67 Identities=10% Similarity=-0.049 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhCCCHHHH
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-------EKNLFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a 126 (331)
.|.+.|-++...+.-.++.....|...|. ..+.+++..++.+.. +.|+..+..|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555444444444444544444 345555555554332 23455666666666666666555
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.72 E-value=0.29 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=15.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455566666666666666665554
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.36 E-value=4 Score=31.25 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=38.6
Q ss_pred HHhccCcHHHHHHHHHhhhhcCCCCCcHhHHH-----HHHHHHHHcCCHHHHHHHHHhCCCCCcHHH--HHHHHHHHhhc
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-----CMVDLLSKAGLLEDALELIRSSKFQPNAVI--WGALLGGCKLH 223 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~--~~~l~~~~~~~ 223 (331)
.+...|++++|...++... .. +.| ..+. .|.+.....|.+++|+..++... .++-.. ...-..++...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l-~~--t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQAL-AQ--TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHH-cc--chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHc
Confidence 4455566666666665554 11 111 1111 22334445556666665555443 121111 11222235555
Q ss_pred CCHHHHHHHHHHHHhcC
Q 043124 224 RNLEIAHIAVNELMILE 240 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~~~ 240 (331)
|+-++|..-|++++...
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 66666666665555544
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.26 E-value=1.4 Score=29.30 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 21 QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+... ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445677777777777888888888888888888888888888888766432 22344555544
No 306
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.22 E-value=9.2 Score=35.09 Aligned_cols=169 Identities=13% Similarity=0.050 Sum_probs=86.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHH-----HHHHHHccCCchHHHHHHHHHHH--hCC-CCchhHHHHH
Q 043124 12 MITCYSQNKQFREALDAFNEMKNSGISPD-QVTMAT-----VLSACAHLGALDLGREIHLYVMQ--IGF-DIDVYIGSAL 82 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~~~~~l 82 (331)
+...|+-.|+|.+|-++|.+- |.... ...|+- ...-+...|+.++-..+.++-.+ ..+ +|. +-
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aA 709 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AA 709 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HH
Confidence 346677788888888888653 22211 111111 11223334444433333322111 011 221 23
Q ss_pred HHHHHhhCCHHHHHHHH-------------hhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 043124 83 VDMYAKCGSLDRSLLVF-------------FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 149 (331)
...+..+|+.++|..+. +++...+..+...+...+.+...+.-|-++|.+|-+. ..++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 44555666666665543 3333334555666666666667777788888776432 2356
Q ss_pred HHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043124 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202 (331)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 202 (331)
..+...++|++|+.+-+... + +.|++ |-...+-++...++++|.+.|.
T Consensus 781 qlHve~~~W~eAFalAe~hP-e--~~~dV--y~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHP-E--FKDDV--YMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred hheeecccchHhHhhhhhCc-c--ccccc--cchHHHHhhhhhhHHHHHHHHH
Confidence 67778888888888877766 2 24442 3333344444444444444443
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=4 Score=30.65 Aligned_cols=118 Identities=9% Similarity=-0.003 Sum_probs=54.8
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhhCCHHHHHHHHhhcCCCCh--hhH-----HHHHHHHHhCCCHH
Q 043124 53 HLGALDLGREIHLYVMQIGFDIDVY-IGSALVDMYAKCGSLDRSLLVFFKLREKNL--FCW-----NSIIEGLAVHGFAH 124 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~-----~~li~~~~~~~~~~ 124 (331)
+.+..++|+.-|..+.+.|...-+. ..--........|+...|...|.++...+. ... ---.-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 4455566666666665554431111 111122334455666666666665543211 111 11122344455555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhh
Q 043124 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (331)
.+..-.+-+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555544433333333334444455556666666666666553
No 308
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.91 E-value=9.4 Score=34.51 Aligned_cols=96 Identities=7% Similarity=0.058 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-PNNSGYCTLLLNMY 254 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~ 254 (331)
..+|...+..-...|+++.+.-+++... +..-...|-..+.-....|+.+.|..++.+..+.. |..+.....-....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 4566666666667777777776666532 22223334344444444477777777776666633 44444432223334
Q ss_pred HhcCCchHHHHHHHHHHhc
Q 043124 255 AEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 255 ~~~g~~~~a~~~~~~m~~~ 273 (331)
-..|++..|..+++.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 4456777887777777654
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.74 E-value=1.7 Score=29.26 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++... .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 566677777777888888888888888888888888888888776652 333336666554
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.52 E-value=0.55 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKN 34 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 34 (331)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666677777777666666543
No 311
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.51 E-value=0.1 Score=38.09 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=79.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHH
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHE 125 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 125 (331)
.++..+.+.+.+.....+++.+...+...+...++.++..|++.++.++.+++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777888888889999888776566788889999999999887888877773332 333456666667777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC
Q 043124 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193 (331)
Q Consensus 126 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (331)
|.-++.++....- .+..+...++++.|.++..+. ++...|..+++.+...+.
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~-------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV-------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC-------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCc
Confidence 7776666432211 111133444555555322222 235566666666655443
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.42 E-value=5.2 Score=30.64 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHhhCCHHHHHHHHhhcCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 84 DMYAKCGSLDRSLLVFFKLREKNLF--CWNSIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
+.....|.+|+|+.+++....++-. ....-...+...|+-++|..-|++.++.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444455555555555555444222 2333344455555555555555555544
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.38 E-value=0.61 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNS 35 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (331)
+|..+...|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555666666666666666666666553
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.17 E-value=1.2 Score=36.24 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh-------hhhc------------------CCCCCc
Q 043124 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS-------MTCG------------------YSITPE 177 (331)
Q Consensus 123 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~------------------~~~~~~ 177 (331)
-.+|+++|.-+.+.. --..+-+.++.++-...+..+|...+.. +... .++..|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 357888888777653 1223334456666666665555544432 2210 123345
Q ss_pred HhHHHHHHHHHHH-cCCHHHHHHHHHhC-C-C--------CCcH-----H----HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 178 VEHYGCMVDLLSK-AGLLEDALELIRSS-K-F--------QPNA-----V----IWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 178 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~-~-~--------~p~~-----~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
..-|...+.-.-+ +-.++++.++...- | . .-|. . +++...+.|...|.+.+|.++.++++
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5556555554332 34466666665543 1 1 1111 2 23444556899999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----hcCCCCC
Q 043124 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK-----ELGIEKR 278 (331)
Q Consensus 238 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~ 278 (331)
..+|-+...+..|+..+...|+--.|..-++++. +.|+..+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999878877777663 3455544
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.98 E-value=3.4 Score=27.72 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043124 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIY 135 (331)
Q Consensus 56 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 135 (331)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456777777776665422 23333334556788899999999999988889888887744 567888888888888887
Q ss_pred cCCCCcHHHHHH
Q 043124 136 ENVEPNGVTFIS 147 (331)
Q Consensus 136 ~~~~p~~~~~~~ 147 (331)
.| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566666543
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.91 E-value=0.46 Score=24.32 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..+..++..+...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999998764
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=3.3 Score=34.22 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=71.9
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-Ch-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Q 043124 71 GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-NL-----FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144 (331)
Q Consensus 71 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 144 (331)
|.+....+...++..-....+++.++..+-+++.. +. .+-.+.++.+. .-++++++-++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 44445555666666666678899998888777642 11 12222333333 3467789988888889999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhh
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTC 170 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (331)
++.++..+.+.+++.+|.++...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999888887773
No 318
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.34 E-value=7 Score=30.20 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHH
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNG-----VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDL 187 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 187 (331)
..-+...|++++|..-|.+.++. +++.. ..|..-..++.+.+.++.|+.--.... . +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai-e--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI-E--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH-h--cCchhHHHHHHHHHH
Confidence 45577888888888888888876 34332 233333456677788888887766666 2 2332 2222233446
Q ss_pred HHHcCCHHHHHHHHHhCC-CCCcH
Q 043124 188 LSKAGLLEDALELIRSSK-FQPNA 210 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~~-~~p~~ 210 (331)
|-+...+++|++=++++. ..|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 777788888888777653 44543
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.16 E-value=5.7 Score=28.96 Aligned_cols=64 Identities=6% Similarity=-0.081 Sum_probs=35.0
Q ss_pred ccCCchHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhhCCHHHHHHHHhhcCCCCh-hhHHHHHHHHH
Q 043124 53 HLGALDLGREIHLYVMQIGFDIDV-YIGSALVDMYAKCGSLDRSLLVFFKLREKNL-FCWNSIIEGLA 118 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~ 118 (331)
..++.+.+..+++.+.-.. |+. ..-..-...+...|++++|..+|+++.+... ..|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 4667777777776665542 222 2222223445667777777777777765432 24444333333
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.08 E-value=6.3 Score=30.43 Aligned_cols=73 Identities=15% Similarity=-0.030 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC--CCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY--SITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
+.|.+.|-++...+.--++.... .+..|....+.+++.+++....+.. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555554444322222222 2223333445555555555444211 1133445555555555555555544
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.94 E-value=11 Score=32.01 Aligned_cols=185 Identities=16% Similarity=-0.015 Sum_probs=92.4
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHh
Q 043124 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--------NLFCWNSIIEGLAV 119 (331)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~ 119 (331)
..+..+.|+++...+........ .++...+.++... +.|+.+++....+..... ....|......+.+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45667888888855544433321 2344555554433 788899888887766531 22233333333333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-----cCc---HHHHHHHHHhhhhc-CCCCCcHhHHHHHHHHHHH
Q 043124 120 HGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-----AGL---VEEGRRRFLSMTCG-YSITPEVEHYGCMVDLLSK 190 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-----~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 190 (331)
.....+..++.+-..... .+......++..... .++ ++....+-..+... ........+|..+++.+.+
T Consensus 81 lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 333333333333221110 001111111111110 111 22222222222210 0123345678888888888
Q ss_pred cCCHHHHHHHHHhCCCCC------cHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 191 AGLLEDALELIRSSKFQP------NAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 191 ~~~~~~a~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.|.++.|...+.++.-.. .......-++.+-..|+..+|...++..+.
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999888877653211 333444445556777888888888887776
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.88 E-value=1.5 Score=36.53 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=60.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (331)
-.+-|.+.|.+++|+..|....... +-+.+++..-..+|.+...+..|+.--+.... .| ...+++|.+.+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 3457899999999999999987753 33889998888999999999888776666551 11 23455555554
Q ss_pred -------CHHHHHHHHHh-CCCCCcH
Q 043124 193 -------LLEDALELIRS-SKFQPNA 210 (331)
Q Consensus 193 -------~~~~a~~~~~~-~~~~p~~ 210 (331)
...+|.+-++. +.+.|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 44444444433 3466763
No 323
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=10 Score=31.11 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh-------HHHHHHHHHccCCchHHHHHH
Q 043124 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVT-------MATVLSACAHLGALDLGREIH 64 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~ 64 (331)
+.+...+.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45566677888888888888888887776644 334556677777766555554
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=9.6 Score=31.66 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYEN---VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 185 (331)
+...++..-....+++.+...+-++...- ..|+...+ ++++.|.+ -+.++++.++..=. .+|+-||..+++.+|
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npI-qYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPI-QYGIFPDQFTFCLLM 142 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcc-hhccccchhhHHHHH
Confidence 34444444444566777777776665431 12222222 23333333 35557777777766 678888888888888
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 043124 186 DLLSKAGLLEDALELIRS 203 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~ 203 (331)
+.+.+.+++.+|..+...
T Consensus 143 D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTE 160 (418)
T ss_pred HHHHhcccHHHHHHHHHH
Confidence 888888888777766554
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.60 E-value=15 Score=32.85 Aligned_cols=177 Identities=9% Similarity=0.033 Sum_probs=119.7
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 043124 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150 (331)
Q Consensus 73 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 150 (331)
+.|.....+++..+.....+.-++.+-.+|.. .+-..|..++.+|... ..+.-..+|+++.+..+ +...+.--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 34666677888888888888888888888764 4567888899999888 67778889998888753 4344443444
Q ss_pred HHhccCcHHHHHHHHHhhhhcCCCCCc------HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHH
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGYSITPE------VEHYGCMVDLLSKAGLLEDALELIRSS----KFQPNAVIWGALLGGC 220 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~l~~~~ 220 (331)
.+...++.+.+...|..+.. .+-|- ...|..|... -..+.+..+.+..++ +..--...+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44455888888888888772 22331 2244444422 134556655555443 3333445555566668
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
....++++|.+++..+++.+..+..+...++.-+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 888999999999999988777777776667666544
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.51 E-value=0.54 Score=22.63 Aligned_cols=22 Identities=9% Similarity=-0.077 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 043124 247 CTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 247 ~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456667777777777776654
No 327
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.29 E-value=34 Score=36.68 Aligned_cols=66 Identities=8% Similarity=-0.055 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 043124 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 210 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 277 (331)
..+|....+.....|.++.|...+-.+.+..+ +..+...+..+...|+...|+.++++..+...+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 46788888888889999999998888877663 4466778999999999999999999998766543
No 328
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=1.3 Score=35.01 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=50.3
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcH-hHHHHHHHHHHHcCCHHHHHHH-HHhCCCCCcHHHHHHHHHH-HhhcCCHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEV-EHYGCMVDLLSKAGLLEDALEL-IRSSKFQPNAVIWGALLGG-CKLHRNLEI 228 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~p~~~~~~~l~~~-~~~~~~~~~ 228 (331)
|.....++.|+..|.+.. -+.|+. .-|..-+.++.+..+++.+..- .+.+.+.||..--...+.. +.....++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 445566777777666666 335554 3445556666667777766443 3345566665544444444 556667777
Q ss_pred HHHHHHHHHh
Q 043124 229 AHIAVNELMI 238 (331)
Q Consensus 229 a~~~~~~~~~ 238 (331)
|+..++++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777755
No 329
>PRK10941 hypothetical protein; Provisional
Probab=89.29 E-value=3.4 Score=33.77 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--+..|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556667899999999999999999999999988888899999999999999999988754
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.24 E-value=2.5 Score=32.97 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc-CCCCCcHhHHHHHHHH
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPEVEHYGCMVDL 187 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 187 (331)
.+.-++.+.+.+...+++...++-++.+ |.+..+-..++..++-.|+|++|..-++-.-+- -...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667777777888888777766653 445555566777778888888887766665410 1122334555555543
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.83 E-value=2.1 Score=33.40 Aligned_cols=63 Identities=24% Similarity=0.172 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 181 YGCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
.+..+..+.+.+.+.+++...++ .+.+|. ..+-..++..++-.|++++|..-++-.-.+.|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44456677788888888877764 455564 4444556667888888888888887777777763
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.72 E-value=2.5 Score=24.66 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 215 ALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 215 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
.+.-++.+.|++++|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45557889999999999999999999998766
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.44 E-value=18 Score=32.35 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
...-+++..+..+..+.-...+-.+|...| -+...|..++.+|... ..+.-..+|+.+.+..+. |+..-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 345567788888888888888888888865 3667788888888777 566677888888887654 455555566666
Q ss_pred HhhCCHHHHHHHHhhcCCC------Ch---hhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhccC
Q 043124 87 AKCGSLDRSLLVFFKLREK------NL---FCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAG 156 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~ 156 (331)
-+ ++.+.+...|.+...+ +. ..|..+...- ..+.+..+.+..++... |..--...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 55 7778888777766432 11 2455554422 34566666666666543 44445566666667788889
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
++.+|++++..+.+ ++ ..|...-..++..+
T Consensus 220 N~~eai~Ilk~il~-~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 220 NWTEAIRILKHILE-HD-EKDVWARKEIIENL 249 (711)
T ss_pred CHHHHHHHHHHHhh-hc-chhhhHHHHHHHHH
Confidence 99999999997773 22 34444555555444
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.21 E-value=1.4 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=13.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 043124 214 GALLGGCKLHRNLEIAHIAVNELMILEP 241 (331)
Q Consensus 214 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p 241 (331)
..+...+...++++.|...++..++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444455555555555555544444
No 335
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.13 E-value=8.4 Score=31.40 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=42.4
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC-CC---ChhhHHHHHHHHH---
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR-EK---NLFCWNSIIEGLA--- 118 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~---~~~~~~~li~~~~--- 118 (331)
.=|.+++..+++.++....-+--+..-+....+....|-.|.+.|+...+.++-..-. .| +...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3455666666666665543222211111123344455556666666666665544322 12 3334555554443
Q ss_pred --hCCCHHHHHHHH
Q 043124 119 --VHGFAHEALAMF 130 (331)
Q Consensus 119 --~~~~~~~a~~~~ 130 (331)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777777665
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=21 Score=32.65 Aligned_cols=155 Identities=17% Similarity=0.091 Sum_probs=98.7
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 97 (331)
-.|+++.|..++.... ....+.+...+.+.|-.+.|+++- ..|+. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHH
Confidence 4577777766544332 234456666777777777666542 22322 2334567788998888
Q ss_pred HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc
Q 043124 98 VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE 177 (331)
Q Consensus 98 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (331)
+..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+.-..+-.... +.|. .+
T Consensus 659 la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~-~~g~-~N 725 (794)
T KOG0276|consen 659 LAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK-KQGK-NN 725 (794)
T ss_pred HHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH-hhcc-cc
Confidence 76554 3556789999999999999999999887654 3345556666777665555544444 3332 22
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~ 209 (331)
.-.-+|...|+++++.+++.+-+.-|.
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~t~r~pe 752 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLISTQRLPE 752 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHhcCcCcH
Confidence 223356788999999999887654443
No 337
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.89 E-value=24 Score=33.16 Aligned_cols=244 Identities=10% Similarity=-0.009 Sum_probs=124.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+..+.+.+++...+..+.. .+.+...-.....+....|+.++|......+-..| ......++.++..+.+.|.+
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 3445566777766653211 23455555666777777787776666555554444 22345566666666655543
Q ss_pred H------------------HHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH---HHHHH
Q 043124 93 D------------------RSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI---SVLSA 151 (331)
Q Consensus 93 ~------------------~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~ 151 (331)
. .|..+...+..........++... .+...+...+.. ++|+...-. ..+.-
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~R 251 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFAS 251 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHH
Confidence 3 332222222110001111111111 122222222211 222321111 11222
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCc--HhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHhhcCCHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSSK-FQPNAVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 228 (331)
+ ...+.+.|...+.......++.+. ...+..+.......+...+|...+.... ...+......-+......++++.
T Consensus 252 l-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 252 V-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred H-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHH
Confidence 2 344568888888887544444443 2334444444444433566777776643 22344445555556568888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+...+..|-...-.......=+++++...|+.++|...|++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888877654222223333347778777888888888888864
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.76 E-value=1.8 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566667777777777777777776553
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.54 E-value=1.1 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 249 LLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 249 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.|..+|...|+.+.|..+++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999988543
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.19 E-value=0.82 Score=23.10 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 247 CTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 247 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+..++.++.+.|++++|...|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456888999999999999999999864
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.15 E-value=12 Score=32.99 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=84.1
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a 229 (331)
-...|++-.|-+-+....+.+.-.|+.... ....+...|+++.+...+.... +.....+...+++...+.|+++.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 345577766655444444344334443333 3344678899999999887542 345667788899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
....+.|+...-.++.....-...-...|-++++...|+++...+.+.+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999999885554454433333444556888999999999876554433
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.87 E-value=5 Score=28.25 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
+..+.++.+...++.|++......+++|.+.+|+..|.++|+-++.+. .+....|-.++ ++...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH---------HHHHHHHHHh
Confidence 566677777777889999999999999999999999999999998544 33333455544 3445566666
Q ss_pred CC
Q 043124 205 KF 206 (331)
Q Consensus 205 ~~ 206 (331)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 63
No 343
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.94 E-value=7.5 Score=25.37 Aligned_cols=65 Identities=8% Similarity=0.024 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHH
Q 043124 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEAL 127 (331)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 127 (331)
.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. +.+..|..++.++...|..+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4556666666532 22222222222224567777777777777 67777777777777776655543
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.63 E-value=16 Score=28.78 Aligned_cols=180 Identities=12% Similarity=0.029 Sum_probs=105.2
Q ss_pred HccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChh-hHHHH--HHHHHhCCCHHHHHH
Q 043124 52 AHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLF-CWNSI--IEGLAVHGFAHEALA 128 (331)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~ 128 (331)
-..|-...|+--|.+.+... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+ .-++.-.|+++-|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 33455555555566655543 334678999998999999999999999999876653 22222 233445789999988
Q ss_pred HHHHHHHcCC-CCcHHHHHHHHHHHhccCcHHHHHHHH-HhhhhcCCCCCcHhHHHH-HHHHHHHcCCHHHHHHHHHhCC
Q 043124 129 MFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRRF-LSMTCGYSITPEVEHYGC-MVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 129 ~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
=+...-+.+. .|-...|.-+. -..-++.+|..-+ ++.. ..|..-|.. ++..|...=..+.+.+-...-.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 8877776641 22222232222 2334555665444 3343 223333433 3333333323333333332211
Q ss_pred ------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 206 ------FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 206 ------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
.+.=..||--|.+-+...|+.++|..+|+-++..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 01123467777788899999999999999888744
No 345
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.45 E-value=9.4 Score=26.05 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=54.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043124 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 133 (331)
....++|..+.+.+...+- -...+--+-+..+.+.|++++|+..=.....||...|.+|- -.+.|..+++..-+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3456788888888877653 23333334455677888888885555555567777776653 45778888888888877
Q ss_pred HHcCCCCcHHHHH
Q 043124 134 IYENVEPNGVTFI 146 (331)
Q Consensus 134 ~~~~~~p~~~~~~ 146 (331)
...| .|....|.
T Consensus 96 a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG-SPELQAFA 107 (116)
T ss_dssp CT-S-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6665 45554443
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.27 E-value=2.8 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=15.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYEN 137 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~ 137 (331)
+..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666443
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.77 E-value=3.5 Score=26.26 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=31.5
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALEL 200 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 200 (331)
..++.+.|+..|....++..-.++ -.+...++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888877744333333 34566677778888888877665
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.15 E-value=22 Score=29.26 Aligned_cols=115 Identities=9% Similarity=0.076 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhc-cCc-HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHH
Q 043124 122 FAHEALAMFDRMIY-ENVEPNGVTFISVLSACTH-AGL-VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDAL 198 (331)
Q Consensus 122 ~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 198 (331)
...+|+++|+..-. ..+--|......+++.... .+. ...-.++.+-+...++-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566776663221 2244566666666666654 222 22222333334434455667777777888888888888888
Q ss_pred HHHHhCC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 199 ELIRSSK----FQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 199 ~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
++++... ..-|...|..+|......|+..-..++.++.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 8877532 2336677888888888888877777666655
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.97 E-value=22 Score=29.00 Aligned_cols=222 Identities=14% Similarity=0.223 Sum_probs=120.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh----CC-CCchhHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNS---GI--SPDQVTMATVLSACAHLGALDLGREIHLYVMQI----GF-DIDVYIG 79 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 79 (331)
.-+|....+.+++++....|.++... .+ .-+..+.++++.--+.+.+.+.-..+++.-++. .- ..=-.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 44567777778888887777777432 11 124455666666555556665555555443221 00 0001233
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCC--------C-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREK--------N-------LFCWNSIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGV 143 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~--------~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~ 143 (331)
+.|...|...|.+.+..++++++.+. | ...|..-|..|....+-.....+|++..... .-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 45677777788888887777766521 1 2467777788888888777778887765432 234444
Q ss_pred HHHHHHHHHh-----ccCcHHHHHHHHHhhhhcCCCC--Cc---HhHHHHHHHHHHHcCCHHHHHHHHHh--C---CCCC
Q 043124 144 TFISVLSACT-----HAGLVEEGRRRFLSMTCGYSIT--PE---VEHYGCMVDLLSKAGLLEDALELIRS--S---KFQP 208 (331)
Q Consensus 144 ~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~--~---~~~p 208 (331)
... +|+-|+ +.|.+++|..-|-+.-+.+.-. |. ..-|-.|...+.+.|- .=|+. . .-.|
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDP 302 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCH
Confidence 333 555554 5688888765444333233211 21 1223333344443331 00111 1 1346
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 209 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.....+.++.+|- .+++.+.++++..-..
T Consensus 303 EIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 303 EILAMTNLVAAYQ-NNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHhhhc
Confidence 6677778887774 4566666555544433
No 350
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.76 E-value=31 Score=30.68 Aligned_cols=154 Identities=14% Similarity=0.025 Sum_probs=94.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC-CCCcH--------HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcH--hHH
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYEN-VEPNG--------VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV--EHY 181 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 181 (331)
++.+-.-.|++.+|++-...|++.- -.|.+ .....+...|+..|-++.|+.-|....+. .-..|. ..-
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~n 407 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCN 407 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHH
Confidence 3334445799999999999998752 22331 11122233456778999999999887732 222232 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHH--------HHHHH--HhhcCCHHHHHHHHHHHHhcC--CC----Ccc
Q 043124 182 GCMVDLLSKAGLLEDALELIRSSKFQPNAVIWG--------ALLGG--CKLHRNLEIAHIAVNELMILE--PN----NSG 245 (331)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~--------~l~~~--~~~~~~~~~a~~~~~~~~~~~--p~----~~~ 245 (331)
..+.-.|.+.|+.+.-.++++.++ .|+..++. .++.+ ....+++.+|.+++++.++.. -+ ..-
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 345567889999999888888876 22222111 11222 357899999999999998843 11 111
Q ss_pred hHHHHHHHHHhcCCchHHHHHHH
Q 043124 246 YCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 246 ~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
....|...+...|+..++.+..+
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccc
Confidence 22345566677788777765443
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.72 E-value=6.6 Score=34.57 Aligned_cols=120 Identities=10% Similarity=0.023 Sum_probs=74.3
Q ss_pred HHHHhCCChhHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 14 TCYSQNKQFREAL-DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 14 ~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
.-....|+.-.|- +++..+....-.|+.... ........|+++.+.+.+...... +.....+...+++...+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 3344556666554 455555544334444433 334456779999998888776654 445677888889999999999
Q ss_pred HHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 93 DRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 93 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
++|..+-+-|... +...........-..|-++++...|+++...
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999888777643 2222222222233445567777777776544
No 352
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.34 E-value=34 Score=32.01 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=13.5
Q ss_pred HHHHHhCCChhHHHHHHHH
Q 043124 13 ITCYSQNKQFREALDAFNE 31 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~ 31 (331)
...+.-.|+|+.|++.+-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 3556677889999888766
No 353
>PRK09687 putative lyase; Provisional
Probab=83.20 E-value=25 Score=29.10 Aligned_cols=234 Identities=11% Similarity=-0.001 Sum_probs=149.3
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc----hHHHHHHHHHHHhCCCCchhH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL----DLGREIHLYVMQIGFDIDVYI 78 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 78 (331)
.+|....-..+.++...|. +++...+..+.+. +|...-...+.+++..|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4666677778888888875 4455555555543 3566666677778888874 4566666666443 456666
Q ss_pred HHHHHHHHHhhCC-----HHHHHHHHh-hcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 79 GSALVDMYAKCGS-----LDRSLLVFF-KLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 79 ~~~l~~~~~~~g~-----~~~a~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
....+.++...+. ..++...+. .+..++..+-...+.++.+.++ .++...+-.+.+. ++...-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 6666666665542 123444443 3445677788888889988887 4577777776653 4445555566666
Q ss_pred hccC-cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 043124 153 THAG-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 153 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 231 (331)
++.+ ....+...+..+.. .++..+-..-+.++.+.|+....-.+++.+. .++. ....+.++...|+. +|..
T Consensus 184 g~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hHHH
Confidence 6653 24466777777662 3466667777888999988544444444454 3442 34677888888886 6889
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHH
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
.+..+....|+ ..+-...+.++.
T Consensus 256 ~L~~l~~~~~d-~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDD-NEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCC-hhHHHHHHHHHh
Confidence 99998887775 444444555543
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.19 E-value=21 Score=29.26 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=23.1
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH-----cCCHHHHHHHH
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK-----AGLLEDALELI 201 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 201 (331)
|-.|.+.+....+.++-.......+ .-+..-|..++..|.. .|.+++|.++.
T Consensus 125 ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3345555555555555544442111 1112224444444432 35555555555
No 355
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=82.56 E-value=14 Score=26.18 Aligned_cols=42 Identities=5% Similarity=-0.024 Sum_probs=31.6
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 043124 228 IAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 228 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 269 (331)
.+.++|..|.. ++-..+.+|......+...|++++|..+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777766 5566677788888888888888888888865
No 356
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.42 E-value=26 Score=28.84 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=52.8
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhccCcHHHHHHHHHh----hhhcCCCCCcHh
Q 043124 105 KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-NVEPNGVTFISVLSACTHAGLVEEGRRRFLS----MTCGYSITPEVE 179 (331)
Q Consensus 105 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~ 179 (331)
.+..+--..+..++..++|..-+++++..... +..-|..-|...|..-...|+..-...+.++ ..+++++..+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~ 279 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDE 279 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHH
Confidence 34555666677777777777777777666544 3444566677777777777777766666665 122566666665
Q ss_pred HHHHHHHHHH
Q 043124 180 HYGCMVDLLS 189 (331)
Q Consensus 180 ~~~~l~~~~~ 189 (331)
.-..+-..+.
T Consensus 280 L~~~L~~LF~ 289 (292)
T PF13929_consen 280 LRSQLSELFK 289 (292)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 357
>PRK09687 putative lyase; Provisional
Probab=82.40 E-value=27 Score=28.91 Aligned_cols=219 Identities=10% Similarity=0.007 Sum_probs=139.3
Q ss_pred CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH----HHHHHHHhhc--CCCChhhHH
Q 043124 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL----DRSLLVFFKL--REKNLFCWN 111 (331)
Q Consensus 38 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~--~~~~~~~~~ 111 (331)
.+|.......+.++...|..+ +...+..+.. .++...-...+.++...|+. +++...+..+ .+++..+..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 356667777777887777644 3333444443 34566666777888888863 5678888766 456777777
Q ss_pred HHHHHHHhCCCH-----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 112 SIIEGLAVHGFA-----HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 112 ~li~~~~~~~~~-----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
..+.++...+.. ..+...+..... .++...-...+.++++.++ +.+...+-.+.+ .++...-..-+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 777777665432 234444444433 3455666677888888887 456666666662 234445555556
Q ss_pred HHHHcC-CHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 043124 187 LLSKAG-LLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK 265 (331)
Q Consensus 187 ~~~~~~-~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 265 (331)
++.+.+ ....+...+..+-..++...-...+.++.+.++. .+...+-+.++.. + .....+.++...|.. +|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~-~---~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG-T---VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC-c---hHHHHHHHHHhcCCH-hHHH
Confidence 666653 2446666666544467777777888888888884 4555555555432 2 345688899999984 6888
Q ss_pred HHHHHHhcC
Q 043124 266 IRVAMKELG 274 (331)
Q Consensus 266 ~~~~m~~~~ 274 (331)
.+..+.+..
T Consensus 256 ~L~~l~~~~ 264 (280)
T PRK09687 256 VLDTLLYKF 264 (280)
T ss_pred HHHHHHhhC
Confidence 888887643
No 358
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=46 Score=31.51 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=24.6
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKN-----LFCWNSIIEGLAVHGFAHEALAMFDRMI 134 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 134 (331)
++.+.+.+.+++|+++.+.....- ...+...|..+.-.|++++|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 344445555555555554443211 1234445555555555555555555543
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.10 E-value=32 Score=29.65 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHH-HhcCCchHHHHHHHHHHh
Q 043124 217 LGGCKLHRNLEIAHIAVNELMILEPN-NSGYCTLLLNMY-AEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 217 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 272 (331)
+..+.+.|-+..|.++.+-+..++|. |+......|+.| .+.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34477888888888888888888887 666656666666 456777777777776554
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.07 E-value=13 Score=30.56 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhc
Q 043124 45 ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 45 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 102 (331)
+...+.|..+|.+.+|.++.+..+... +.+...+-.|++.+...|+--.|.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334445556666666666666655553 345555556666666666654554444444
No 361
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.62 E-value=34 Score=29.64 Aligned_cols=172 Identities=14% Similarity=0.089 Sum_probs=76.5
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-------------Ch
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGF--DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-------------NL 107 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~~ 107 (331)
.+.-+...|...|+++.|++.+.......- ......|-.+|..-.-.|+|........+..+. ..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 455555666666666666666655433210 112223334444444445555444444333221 11
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHH
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYEN------VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (331)
.++..+.. ...+++..|.+.|-...... +.|+..+.-..+.++.--++-+--..+.....-+.=...++..+
T Consensus 232 ~C~agLa~--L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLAN--LLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 22222322 23335666655554332110 33444443334455444444333222222211000012234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC--------CCCcHHHHHHHHH
Q 043124 182 GCMVDLLSKAGLLEDALELIRSSK--------FQPNAVIWGALLG 218 (331)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~~--------~~p~~~~~~~l~~ 218 (331)
..+.+.| .+++...+++++++. +.|.+.+...+|+
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 5544443 457888889888764 4455555554444
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.45 E-value=13 Score=24.59 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=16.0
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 237 MILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 237 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
++.+|++......+...+...|++++|++.+-++.
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445544444445555555555555554444444
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.33 E-value=1.9 Score=27.48 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=33.5
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHH
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNS---GYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
....+-++|...|+++++..++.. .+...|+.+|+..|++.+++++-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888554433 34456778888888888877653
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.12 E-value=46 Score=30.74 Aligned_cols=181 Identities=12% Similarity=0.049 Sum_probs=104.0
Q ss_pred HHHHHHHHhhcCCC-ChhhHHHHHHH-----HHhCCCHHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHhcc---
Q 043124 92 LDRSLLVFFKLREK-NLFCWNSIIEG-----LAVHGFAHEALAMFDRMIY-------ENVEPNGVTFISVLSACTHA--- 155 (331)
Q Consensus 92 ~~~a~~~~~~~~~~-~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~--- 155 (331)
...|.+.++...+. ++..-..++.+ +...++.+.|+..|+.+.+ .|.++ ....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCC
Confidence 45677777766654 33333333333 3355678899999988866 44222 344455555553
Q ss_pred -C-cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCcHHHHHHHHHHH----hhcCCHHH
Q 043124 156 -G-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK-AGLLEDALELIRSSKFQPNAVIWGALLGGC----KLHRNLEI 228 (331)
Q Consensus 156 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~ 228 (331)
. +.+.|..+|.... ..| .|+....-..+..... ..+...|.++|......-.+..+..+..+| ....+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAA-ELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHH-hcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 2 6778999988887 444 3443333222222222 246788999888643222333333333332 23457889
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
|..++.++.+.++.....-...+..+.. ++++.+.-.+..+.+.|....
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHH
Confidence 9999998888773322222233344444 788888888877777775544
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.03 E-value=4.2 Score=20.14 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 224 RNLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
|+.+.|..+|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788888888888888877777765554
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.00 E-value=55 Score=31.56 Aligned_cols=215 Identities=13% Similarity=-0.026 Sum_probs=114.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCch-------hHHHHHH-HHHHhhCCHHHHHHHHhhcCC--------CChhhHHHHHH
Q 043124 52 AHLGALDLGREIHLYVMQIGFDIDV-------YIGSALV-DMYAKCGSLDRSLLVFFKLRE--------KNLFCWNSIIE 115 (331)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~ 115 (331)
....++.+|..+..++...-..|+. ..++.|- ......|+.++|+++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3457888888888877654222221 1233332 223356788888877665432 25567777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH-----HHHhccCcH--HHHHHHHHhhhhcCCC-----CCcHhHHHH
Q 043124 116 GLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL-----SACTHAGLV--EEGRRRFLSMTCGYSI-----TPEVEHYGC 183 (331)
Q Consensus 116 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~~~~-----~~~~~~~~~ 183 (331)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|.. .+....|......... .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988887776553233433333222 224455632 2233333333321111 111234444
Q ss_pred HHHHHHHcCCHHHHHHHHH---hCC--CCCc--HHH--HHHHHHHHhhcCCHHHHHHHHHHHHh--cCCCCcchHHH---
Q 043124 184 MVDLLSKAGLLEDALELIR---SSK--FQPN--AVI--WGALLGGCKLHRNLEIAHIAVNELMI--LEPNNSGYCTL--- 249 (331)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~---~~~--~~p~--~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~--- 249 (331)
+..++.+ .+.+..-.. +.+ ..|. ... +..|+......|+.++|...++++.. ..+.....|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 333322222 111 1222 222 23567778899999999999999987 23321222221
Q ss_pred --HHHHHHhcCCchHHHHHHHH
Q 043124 250 --LLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 250 --l~~~~~~~g~~~~a~~~~~~ 269 (331)
-.......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 12233457888877766655
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.99 E-value=21 Score=26.08 Aligned_cols=83 Identities=6% Similarity=0.069 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHccCC-chHHHHHHHHHHHhCCCCchhHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGI-----SPDQVTMATVLSACAHLGA-LDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
...|.++.-....+++...+.+++.+..... ..+...|.+++.+.++... --.+..+|..+++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777777777888888877777743210 2355678888888866665 445667778888777788888888
Q ss_pred HHHHHHHhh
Q 043124 81 ALVDMYAKC 89 (331)
Q Consensus 81 ~l~~~~~~~ 89 (331)
.++.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888877654
No 368
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=42 Score=28.97 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=136.6
Q ss_pred cCCchHHHHHHHHHHH-----hCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHH
Q 043124 54 LGALDLGREIHLYVMQ-----IGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 128 (331)
.++.+.|.+-+-...+ .+...+..++..++..|...++|+.--+... ...-+.|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHH
Confidence 4555555554433322 1233345566667777777777776433222 22234566665554
Q ss_pred H--HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc---HhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 129 M--FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE---VEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 129 ~--~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
- .+-|.-..-.||..|-..++..+ +.+. ...+-.. ...-..|.+.+-..|+.++|.+++.+
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tL-------------r~Vt-egkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~e 156 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETL-------------RTVT-EGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCE 156 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHH-------------HHhh-cCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 2 22232223356666666555443 2222 1121111 23345567778889999999999887
Q ss_pred CCCCC------c--HHHHHHHHHHHhhcCCHHHHHHHHHHHHh---cCCCC----cchHHHHHHHHHhcCCchHHHHHHH
Q 043124 204 SKFQP------N--AVIWGALLGGCKLHRNLEIAHIAVNELMI---LEPNN----SGYCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 204 ~~~~p------~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
.++.. . +....--++.|...+|+-.|.-+-+++.. -.|+. ..+|..++......+.+=.+-+.|+
T Consensus 157 l~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yr 236 (439)
T KOG1498|consen 157 LQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYR 236 (439)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 65321 1 11122334558889999999888888766 22432 3568888888889999999999999
Q ss_pred HHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCccCccccc
Q 043124 269 AMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330 (331)
Q Consensus 269 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~p~~~~~ 330 (331)
...+.|.... ...-|++.....--|. ...|-..+--+.+.++- .-++..-.|+.+.+
T Consensus 237 aiy~t~~vk~-d~~kw~~vL~~iv~f~---~LAp~dneQsdll~~is-~dKkL~e~p~~k~l 293 (439)
T KOG1498|consen 237 AIYDTGNVKE-DPEKWIEVLRSIVSFC---VLAPHDNEQSDLLARIS-NDKKLSELPDYKEL 293 (439)
T ss_pred HHhccccccc-ChhhhhhhhhhheeEE---eecCCCcHHHHHHHHHh-cccccccCccHHHH
Confidence 9887765443 2333444444443443 23444444444444443 33444445555443
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.64 E-value=20 Score=27.21 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 226 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+++|.+.|+++...+|++. .|..-+... .+|-++..++.+.+....
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhhhh
Confidence 6677778888888999955 445555554 246777777777765544
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.23 E-value=36 Score=27.81 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=115.1
Q ss_pred CCchhhHHHHHHHH-HhCCChhHHHHHHHHHHHCCCCCCHhhHH---HHHHHHHccCCchHHHHHHHHHHHh---CCC--
Q 043124 3 ARDIISWTTMITCY-SQNKQFREALDAFNEMKNSGISPDQVTMA---TVLSACAHLGALDLGREIHLYVMQI---GFD-- 73 (331)
Q Consensus 3 ~p~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-- 73 (331)
+||+..=|-.-.+- .+....++|+.-|.+..+.......+.|. .++....+.+++++....+.+++.. .+.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 45665544332221 23347888888888887764444555444 4567778888988888888877532 121
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhhcCC-----CCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CC
Q 043124 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-----KNL----FCWNSIIEGLAVHGFAHEALAMFDRMIYENV----EP 140 (331)
Q Consensus 74 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p 140 (331)
-+....|++++......+.+--.++|+.-.+ .+. .+.+.|...|...+.+.+..+++.++...-. .-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 1345566777766656665555554443221 122 2456677788888888888888888765421 11
Q ss_pred cH-------HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH-----HHHcCCHHHH
Q 043124 141 NG-------VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL-----LSKAGLLEDA 197 (331)
Q Consensus 141 ~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a 197 (331)
|. ..|..-|..|....+-..-..+|++...-..--|.+..... |+- ..+.|++++|
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKA 250 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHH
Confidence 21 34555566677777777777777776633333455444432 332 3456777776
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.00 E-value=19 Score=25.49 Aligned_cols=46 Identities=4% Similarity=0.005 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE 104 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 104 (331)
+..+-+..+....+-|++.+...-++++.+.+++.-|..+|+.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555556666677777777777777777777777777776653
No 372
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.67 E-value=47 Score=28.88 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCC------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---------CCCC
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLRE------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE---------NVEP 140 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p 140 (331)
...+.-+.+.|..+|+++.|.+.|.+... .-+..|-.+|..-.-.|+|..+.....+..+. .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34667788999999999999999999653 13446777888888889999888888877654 1334
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC-----CCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCcH
Q 043124 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-----ITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK----FQPNA 210 (331)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~p~~ 210 (331)
-...+..+...+. +++..|.+.|-....... +.| |+.+|.. +.+++--++-+--+.+..... ....+
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALAtfdr~~Lk~~vi~n~~Fk~flel~P 306 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALATFDRQDLKLNVIKNESFKLFLELEP 306 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhccCCHHHHHHHHHcchhhhhHHhcCh
Confidence 4444444444433 477777776655542222 122 3444432 233332222222223333211 11222
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.....+..-| .+++....++++++..
T Consensus 307 qlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 307 QLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2333333323 4577778888777755
No 373
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.46 E-value=67 Score=30.52 Aligned_cols=181 Identities=16% Similarity=0.106 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhCCCC---chhHHHHHHHHHHhhCCHHHHHHHHhhcCC-CCh----------hhHHHHHHHHHhCCCHHH
Q 043124 60 GREIHLYVMQIGFDI---DVYIGSALVDMYAKCGSLDRSLLVFFKLRE-KNL----------FCWNSIIEGLAVHGFAHE 125 (331)
Q Consensus 60 a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~----------~~~~~li~~~~~~~~~~~ 125 (331)
-..++.+|...--.| ...+...++-.|....+++...++.+.++. ||. ..|.-.++---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 344556666542223 345566777888888999999988887764 211 123333333345678888
Q ss_pred HHHHHHHHHHcC--CCCcHHHH-----HH--HHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC-CHH
Q 043124 126 ALAMFDRMIYEN--VEPNGVTF-----IS--VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG-LLE 195 (331)
Q Consensus 126 a~~~~~~m~~~~--~~p~~~~~-----~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 195 (331)
|+.+.-.+.+.. +.||.... -- +-..|...+..+.|...|++.- .+.|+...--.+...+...| .++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 998887777542 56665432 11 1123445577788999998876 44666443333333333333 233
Q ss_pred HHHHHH------Hh-CCCCC---cHHHH---HHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 196 DALELI------RS-SKFQP---NAVIW---GALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 196 ~a~~~~------~~-~~~~p---~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
...++- .. ++.+- +...| ...+.+-+-.+++.+|....+.|.+++|..
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 332221 11 11111 11111 223444566789999999999999988773
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.69 E-value=41 Score=27.73 Aligned_cols=117 Identities=8% Similarity=-0.023 Sum_probs=60.7
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCchh-------HHHHHHHHHHhhCCHHHHHHHHhhc-------CCC-ChhhHHHHHH
Q 043124 51 CAHLGALDLGREIHLYVMQIGFDIDVY-------IGSALVDMYAKCGSLDRSLLVFFKL-------REK-NLFCWNSIIE 115 (331)
Q Consensus 51 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~-~~~~~~~li~ 115 (331)
..+.+++++|+..+..++..|+..+.. +...+...|.+.|+...--+..... .+| ......+++.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 456678888888888888887665543 3445777888888765544433322 222 2223444444
Q ss_pred HHHhCC-CHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHh
Q 043124 116 GLAVHG-FAHEALAMFDRMIYENVEPNG-----VTFISVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 116 ~~~~~~-~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~ 167 (331)
-+-... .++..+.+.....+.-..-.. ..=..++..+.+.|.+.+|..+.+.
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 433322 244444444444332111111 1112355556666666666554443
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.33 E-value=22 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIY 135 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 135 (331)
-|..++..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777788888887777765
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.06 E-value=28 Score=25.43 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLRE---------KNLFCWNSIIEGLAVHGF-AHEALAMFDRMIYENVEPNGVTFISV 148 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 148 (331)
.+.++......+++.....+++.+.. .+...|++++.+..+..- --.+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34445544555555555555554421 133345555555433333 22344455555554455555555555
Q ss_pred HHHHhcc
Q 043124 149 LSACTHA 155 (331)
Q Consensus 149 l~~~~~~ 155 (331)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5554443
No 377
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.58 E-value=84 Score=30.70 Aligned_cols=163 Identities=11% Similarity=0.019 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccCcH--HHHHHHHHhhhhcCCCCCcHhHHH-
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYEN---VEPNGVTFISVLSACTHAGLV--EEGRRRFLSMTCGYSITPEVEHYG- 182 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 182 (331)
-|..|+..|...|++++|+++|.+..+.. -..-...+..++..+.+.+.. +-.+++-....++ ...-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeec
Confidence 58899999999999999999999987632 111122233455555555544 4444444444421 1110011111
Q ss_pred -----------HHHHHHHHcCCHHHHHHHHHhCC---CCCcHHHHHHHHHHHhhcC--------CHHHHHHH-----HHH
Q 043124 183 -----------CMVDLLSKAGLLEDALELIRSSK---FQPNAVIWGALLGGCKLHR--------NLEIAHIA-----VNE 235 (331)
Q Consensus 183 -----------~l~~~~~~~~~~~~a~~~~~~~~---~~p~~~~~~~l~~~~~~~~--------~~~~a~~~-----~~~ 235 (331)
.-+-.|......+-+...++.+. -.++....+.++..|+..= +-+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 12233556667777777777654 2345555566665554321 11223222 122
Q ss_pred HHh----cCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 236 LMI----LEPN-------NSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 236 ~~~----~~p~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
++. .+|. ...+|......+.+.|+.++|+.++-....
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222 1221 245566666677799999999998877654
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.47 E-value=40 Score=26.96 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHhcc-CcHHHHHHHHHhhhhcCCCCCcH----hHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCcHHHH---HHH
Q 043124 148 VLSACTHA-GLVEEGRRRFLSMTCGYSITPEV----EHYGCMVDLLSKAGLLEDALELIRSSK---FQPNAVIW---GAL 216 (331)
Q Consensus 148 ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~p~~~~~---~~l 216 (331)
+...|-.. .+++.|+..|+..-+-+...... ..+--+...-...+++.+|+++|++.. +..+..-| ..+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 56667777776655322222111 122222333456788999999988643 22222222 122
Q ss_pred HHH---HhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 217 LGG---CKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 217 ~~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
+.+ ..-..|.-.+.+.+++..+.+|.-...
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 222 223367777788888888888864433
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.23 E-value=41 Score=26.99 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=40.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-ccCCchHHHHHHHHHHH
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACA-HLGALDLGREIHLYVMQ 69 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 69 (331)
-+++.+-+.++++++...++++...+...+..--+.|..+|- ..|....+.+++.....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356777788999999999999998887777777777766662 24555566666655544
No 380
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.77 E-value=71 Score=29.52 Aligned_cols=246 Identities=12% Similarity=0.024 Sum_probs=129.3
Q ss_pred HHhCCChhHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHccC-----CchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 16 YSQNKQFREALDAFNEMKN-------SGISPDQVTMATVLSACAHLG-----ALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
+....+++.|+..|+.+.+ .| ++.....+..+|.+.. +.+.|..++.+..+.|.+ +.... +.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HH
Confidence 4456788889998888866 44 3345556677776543 556788888888877743 33322 33
Q ss_pred HHHHhh---CCHHHHHHHHhhcCCC-ChhhHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 043124 84 DMYAKC---GSLDRSLLVFFKLREK-NLFCWNSIIEGLA----VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155 (331)
Q Consensus 84 ~~~~~~---g~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 155 (331)
.++... .+..+|.++|....+. .+.++-.+..+|. -..+...|...+.+.-+.| .|....-...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 333322 3567888888877654 3333333333332 2346888888888888887 3332222334444444
Q ss_pred CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH---HH----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhh----cC
Q 043124 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL---SK----AGLLEDALELIRSSKFQPNAVIWGALLGGCKL----HR 224 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 224 (331)
+..+.+...+..+. ..+.+.....-..++... .. ..+...+...+.+...+-+......+-..|.. ..
T Consensus 411 ~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 66666666655555 333222111111111111 00 12444455555544333344444444444322 23
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHhc
Q 043124 225 NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS---RWAEVTKIRVAMKEL 273 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 273 (331)
+.+.|...+..+.... ......+..++...- .+..|.+++++..+.
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 5666766666665544 222233554443321 145666666666543
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.65 E-value=12 Score=33.91 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SK-FQPNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
|+.-.|...+.......... .-.....|.....+.|..-.|-.++.+ +. ....+.++..+.+++....+++.|++.|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 55555555555544111111 112233344445555555555555443 22 1233455555666666666666666666
Q ss_pred HHHHhcCCCCcchHHHHH
Q 043124 234 NELMILEPNNSGYCTLLL 251 (331)
Q Consensus 234 ~~~~~~~p~~~~~~~~l~ 251 (331)
+.+++..|+++..-+.|.
T Consensus 700 ~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHhcCCCChhhHHHHH
Confidence 666666666655544443
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.37 E-value=58 Score=28.35 Aligned_cols=55 Identities=5% Similarity=-0.045 Sum_probs=39.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHh--ccCcHHHHHHHHHhhh
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGV--TFISVLSACT--HAGLVEEGRRRFLSMT 169 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~ 169 (331)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556889999999999999887 666554 3334444443 4567888999998877
No 383
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=74.30 E-value=4.1 Score=28.46 Aligned_cols=38 Identities=42% Similarity=0.829 Sum_probs=27.0
Q ss_pred ccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCccCccccc
Q 043124 281 GSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVPELEAM 330 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~p~~~~~ 330 (331)
+++|++. ..|++++..+|.. .+...+...||.|+.+.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~ 39 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEV 39 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhh
Confidence 4566666 8899999999998 445556667777766543
No 384
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.18 E-value=53 Score=27.80 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=59.7
Q ss_pred CchhhHHHHHHHHHhCCC------------hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhC
Q 043124 4 RDIISWTTMITCYSQNKQ------------FREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 71 (331)
.|+.+|-.++..--..-. .+.-+.++++..+.+ +-+.......+..+.+.-+.+...+-|+.++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 457777777755433321 345567777777764 3456666777777777777788788888887763
Q ss_pred CCCchhHHHHHHHHHHhh---CCHHHHHHHHhh
Q 043124 72 FDIDVYIGSALVDMYAKC---GSLDRSLLVFFK 101 (331)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~ 101 (331)
+-+...|...++..... -.++....+|.+
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 33566777766655442 235555555443
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.06 E-value=8.6 Score=31.71 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 149 (331)
-|+..|....+.||+++|+.++++.++.|..--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46688888888888888888888888888766666665443
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.62 E-value=15 Score=24.32 Aligned_cols=53 Identities=8% Similarity=-0.071 Sum_probs=35.8
Q ss_pred HhhcCCHHHHHHHHHHHHhcC-----CC----CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 220 CKLHRNLEIAHIAVNELMILE-----PN----NSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~-----p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
..+.|++..|.+.+.+..... +. .......+.......|++++|...+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457788888877777776621 11 011223466777888999999999988764
No 387
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=73.52 E-value=49 Score=27.99 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh------ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHH
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACT------HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (331)
..++++.++++....+. |.++.....|.++- ..-+|.....+|+.+. . +.|++.+--+-.-+..+..-.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~-~--~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE-Q--AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH-H--hCCCCeEeehHHHHHHHhhhHH
Confidence 45788888888888874 78888887776654 2346777788888777 3 3455333222344556666677
Q ss_pred HHHHHHHhCCCCC--cHHHHHHHHHH--HhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 196 DALELIRSSKFQP--NAVIWGALLGG--CKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 196 ~a~~~~~~~~~~p--~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
.++...+.++-.| +......-.++ +.+.|+.++|...|++++.+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 7777777665443 22222222222 7788999999999999988776643
No 388
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.47 E-value=65 Score=28.45 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=12.1
Q ss_pred CcHHHHHHHHHhhhhcCCCCCcHhH
Q 043124 156 GLVEEGRRRFLSMTCGYSITPEVEH 180 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (331)
++.+.|..++..|. ..|..|....
T Consensus 244 sd~~aal~~l~~~l-~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARML-EAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHH-HcCCCHHHHH
Confidence 45555555555555 4444444333
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.32 E-value=62 Score=28.19 Aligned_cols=55 Identities=5% Similarity=-0.062 Sum_probs=34.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHH--HccCCchHHHHHHHHHHHh
Q 043124 15 CYSQNKQFREALDAFNEMKNSGISPDQV--TMATVLSAC--AHLGALDLGREIHLYVMQI 70 (331)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 70 (331)
.+...+++..|.++|+.+... ++++.. .+..+..+| ....++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444677888888888887776 554444 333443433 3456777777777766554
No 390
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.09 E-value=40 Score=27.18 Aligned_cols=88 Identities=18% Similarity=-0.002 Sum_probs=59.9
Q ss_pred HHHHHcCCHHHHHHHHHh---------CCCCCcHHH-----------HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc
Q 043124 186 DLLSKAGLLEDALELIRS---------SKFQPNAVI-----------WGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~---------~~~~p~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 245 (331)
.-+.+.|++.+|...+++ +.-+|...- +...-.++...|++-++++--.+.+...|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566777776655542 123343322 223334466788888888888888889999888
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 246 YCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 246 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+|..-..+.+..=+.++|..=|....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 8887788777777778888888777754
No 391
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.08 E-value=2.5 Score=35.25 Aligned_cols=116 Identities=13% Similarity=0.045 Sum_probs=51.8
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcHH-HHHHHHHHHhhcCCHHHHH
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNAV-IWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 230 (331)
...|.++.|+..|...++.. ++....|..-..++.+.++...|++=+.. +.+.||.. .|-.=-.+-...|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34555666666666555221 33344444444555555555555544442 23344421 1111112233445666666
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 231 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
+.++.+.+++-+. ..=..|-...-..+..++-...+++.+
T Consensus 203 ~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 6666555544331 111223344444444444444444443
No 392
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.64 E-value=6.2 Score=29.86 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----chHHHHHHHHH
Q 043124 226 LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR----WAEVTKIRVAM 270 (331)
Q Consensus 226 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 270 (331)
+++|..-|++++.++|+...++..++.+|...+. ..+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4556666777777999988898889988876543 33444444443
No 393
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.17 E-value=45 Score=26.29 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=21.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.....++....+.|++++|.+.|.++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34455677788888888888888888754
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.98 E-value=10 Score=33.40 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHhccCcHHHHHHHHHhhhhcCCCCCcHhHH-HHHHHHHHHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCH
Q 043124 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHY-GCMVDLLSKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNL 226 (331)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~ 226 (331)
......+.++.|..++.+.. ...|+...| ..-..++.+.+++..|+.=+.+ +...|+ ...|..=..++...+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34445566666666666666 224543322 2223556666666666443332 334443 22232222334445555
Q ss_pred HHHHHHHHHHHhcCCCCcch
Q 043124 227 EIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 227 ~~a~~~~~~~~~~~p~~~~~ 246 (331)
.+|...|+....+.|+++.+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHH
Confidence 66666666666666665544
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.48 E-value=16 Score=20.70 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=16.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVL 48 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 48 (331)
+.|-..++..++++|.+.|...+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.45 E-value=1.6e+02 Score=32.19 Aligned_cols=149 Identities=12% Similarity=0.036 Sum_probs=90.5
Q ss_pred HHHHHHHccCCchHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhh-cCCCChhhHHHHHHHHHhC
Q 043124 46 TVLSACAHLGALDLGREIHLYV----MQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFK-LREKNLFCWNSIIEGLAVH 120 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~ 120 (331)
.+..+-.+++.+.+|...+++- ++.. .....+-.+...|...+++|+...+... ...++ ....|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 4444556777888888877762 2221 1233344455588888888887777663 33332 23344556677
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHH-HHHHHHcCCHHHHHH
Q 043124 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM-VDLLSKAGLLEDALE 199 (331)
Q Consensus 121 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 199 (331)
|+|..|...|+.+.+.+ ++...+++-++......+.++..+...+-... +..+....++.+ +.+--+.++++....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 88888888888888764 34467777777777777888777776666552 223333333332 333456666666655
Q ss_pred HHH
Q 043124 200 LIR 202 (331)
Q Consensus 200 ~~~ 202 (331)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.33 E-value=23 Score=27.23 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=28.8
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 043124 205 KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241 (331)
Q Consensus 205 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 241 (331)
...|+...|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777778888888888888888777777
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.77 E-value=21 Score=27.43 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=18.0
Q ss_pred CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
..|+..+|..++.++...|+.++|.+...++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555556666666666666666665555543
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.47 E-value=1.1e+02 Score=29.73 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=120.7
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHh-------hHHHHHH-HHHccCCchHHHHHHHHHHHhC----CCCchhHHHHHH
Q 043124 16 YSQNKQFREALDAFNEMKNSGISPDQV-------TMATVLS-ACAHLGALDLGREIHLYVMQIG----FDIDVYIGSALV 83 (331)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 83 (331)
.....++.+|..+..+....-..|+.. .++.|-. .....|+++.+.++.+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445688999999998887653232221 2333322 2345789999999988877651 223455667777
Q ss_pred HHHHhhCCHHHHHHHHhhcCC----CChhhHH---HH--HHHHHhCCC--HHHHHHHHHHHHHcC---CC---CcHHHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLRE----KNLFCWN---SI--IEGLAVHGF--AHEALAMFDRMIYEN---VE---PNGVTFI 146 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~---~l--i~~~~~~~~--~~~a~~~~~~m~~~~---~~---p~~~~~~ 146 (331)
.+..-.|++++|..+..+..+ .++..+. .+ ...+...|+ +.+.+..|....... .+ +-.-++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988766543 2444332 22 223556673 344444444443321 11 2233444
Q ss_pred HHHHHHhccC-cHHHHHHHHHhhhhcCCCCCcHhHH--HHHHHHHHHcCCHHHHHHHHHhCC-------CCCcHHHHHHH
Q 043124 147 SVLSACTHAG-LVEEGRRRFLSMTCGYSITPEVEHY--GCMVDLLSKAGLLEDALELIRSSK-------FQPNAVIWGAL 216 (331)
Q Consensus 147 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~-------~~p~~~~~~~l 216 (331)
.++.++.+.. ...++..-+.--. .....|-.... ..|+......|++++|...+.++. ..++-.+-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555421 1122222222222 22222222222 367788889999999988887641 12333333333
Q ss_pred HHH--HhhcCCHHHHHHHHHH
Q 043124 217 LGG--CKLHRNLEIAHIAVNE 235 (331)
Q Consensus 217 ~~~--~~~~~~~~~a~~~~~~ 235 (331)
+.. ....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 433 3467888777776666
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.38 E-value=36 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhhCCHHHHHHHHhh
Q 043124 59 LGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFK 101 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 101 (331)
.+.++|+.|.+.|+... ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888887776543 45566777777888888888887764
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.36 E-value=12 Score=25.70 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 244 SGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...|..|+..|...|.+++|++++.+..+.
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 345789999999999999999999998863
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.44 E-value=30 Score=30.21 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLRE-----------KNLFCWNSIIEGLAVHGFAHEALAMFDRMI 134 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 134 (331)
...|++.++-.|++..|+++++.+.- -.+.++.-++-+|...+++.+|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888999999888876641 134567778888888888888888888764
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.34 E-value=5.6 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=25.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
...|.-..|-.+|.+|++.|-+||. ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999988875 56666543
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.23 E-value=6.4 Score=32.43 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=16.2
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 275 (331)
|+...+|+.-|..-.+.|++++|+.++++....|+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33334444444444444444444444444444443
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.84 E-value=34 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCcHH
Q 043124 187 LLSKAGLLEDALELIRSSKFQPNAV 211 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~~~~p~~~ 211 (331)
.|.+.|.+++|.+++++.--.|+..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCCCch
Confidence 3555666666666665532244433
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.35 E-value=39 Score=30.95 Aligned_cols=125 Identities=8% Similarity=-0.050 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
-+-.++..|..- +.|--...|...--+...|+...|...+..+........-+....|.+...+.|....|-.++.+..
T Consensus 591 ~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 344555555432 3333334444333345678998888888776554322233344557777778888888887776544
Q ss_pred C---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 043124 104 E---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150 (331)
Q Consensus 104 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 150 (331)
. ..+.++..+.+++....+.+.|++.|++..+.. +-+...-+.|..
T Consensus 670 ~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 670 AINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred hhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 3 355678888889999999999999999887763 334444444443
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.51 E-value=36 Score=24.76 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 043124 195 EDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259 (331)
Q Consensus 195 ~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 259 (331)
+.|.++.+-+| ...............|++.-|.++.+.++..+|++...-.....+|...|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45666666676 223333445557789999999999999999999998887777787776654
No 408
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.93 E-value=98 Score=27.89 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=110.8
Q ss_pred CchhhHHHHHHHHHhCC------ChhHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc
Q 043124 4 RDIISWTTMITCYSQNK------QFREALDAFNEMKNSG-ISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID 75 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~------~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 75 (331)
|+...|+..|..|...- ....-+.+|+.....+ ..+ ....|..+...+.......++ -..+...++..+
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~---a~~l~~e~f~~s 389 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV---AVKLTTELFRDS 389 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH---HHHhhHHHhcch
Confidence 56667888888777643 3444556666655443 233 344666666666555544333 222333334445
Q ss_pred hhHHHHHHHHHHhhC-CHHHH-HHHHhhcC----CCChhhHHHHHHHHHhCCC-HH--HHHHHHHHHHHcCCCCcHHHH-
Q 043124 76 VYIGSALVDMYAKCG-SLDRS-LLVFFKLR----EKNLFCWNSIIEGLAVHGF-AH--EALAMFDRMIYENVEPNGVTF- 145 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g-~~~~a-~~~~~~~~----~~~~~~~~~li~~~~~~~~-~~--~a~~~~~~m~~~~~~p~~~~~- 145 (331)
...|-.-+....+.. +.+-- .+.|..+. .+-...|+... .|+ .. .-..++......+ .|+..|+
T Consensus 390 ~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~ 463 (568)
T KOG2396|consen 390 GKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLK 463 (568)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehh
Confidence 555554444444221 11111 11122221 11223333333 111 11 1112223333332 3444443
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH--cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHh
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK--AGLLEDALELIRSSK--FQPNAVIWGALLGGCK 221 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~ 221 (331)
+.++.-+...|-..+|...+..+.. -.+|+...|..+|+.-.. .-+...+..+++.+- +-.|+..|...+.--.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 3455666667777777777777762 225566666666654221 122555566665431 2245555655555555
Q ss_pred hcCCHHHHHHHHHHHHh-cCCC
Q 043124 222 LHRNLEIAHIAVNELMI-LEPN 242 (331)
Q Consensus 222 ~~~~~~~a~~~~~~~~~-~~p~ 242 (331)
..|..+.+-.++.++.+ +.|.
T Consensus 542 ~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred cCCCcccccHHHHHHHHhhChh
Confidence 67777777666666655 4444
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.83 E-value=50 Score=24.14 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 27 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
++.+.+++.|++++..= ..++..+...++.-.|.++++.+.+.+...+..|--.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 45566777888776553 35667777777778999999999988766655544444566666654
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.30 E-value=49 Score=23.90 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=38.9
Q ss_pred CCcHhHHHHHHHHHHHcCCHH---HHHHHHHhCC--CCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 175 TPEVEHYGCMVDLLSKAGLLE---DALELIRSSK--FQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
.++..+--.+..++.+..+-+ +.+.+++++- -.|+ -....-|.-++.+.++++.+.++++.+++..|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444444555555554433 3344555431 2232 1223334445677777777777777777777776554
No 411
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.08 E-value=1.2e+02 Score=28.39 Aligned_cols=189 Identities=14% Similarity=0.075 Sum_probs=105.9
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHH-HhCCCCc--hhHHHHHHHHHH-hhCCHHHHHHHHhhcCC----CCh----
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVM-QIGFDID--VYIGSALVDMYA-KCGSLDRSLLVFFKLRE----KNL---- 107 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~----~~~---- 107 (331)
+...|..||.. |+..++.+. +..++|. ..++-.+...+. ...+++.|+..+++... ++.
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44556666654 345555555 3334443 334445566655 67888888888876531 211
Q ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCcHHHHHHH-HHHHhccCcHHHHHHHHHhhhhcCC--CCCcHh
Q 043124 108 -FCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVEPNGVTFISV-LSACTHAGLVEEGRRRFLSMTCGYS--ITPEVE 179 (331)
Q Consensus 108 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 179 (331)
.+-..++..+.+.+... |...+++.++. +..+-...|..+ +..+...++...|.+.++.+..... -.|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 13345566666666655 88888876653 222334444444 3333334788889888888774332 233344
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHhC-------C-----CCCcHHHHHHHHHH--HhhcCCHHHHHHHHHHHHh
Q 043124 180 HYGCMVDLLS--KAGLLEDALELIRSS-------K-----FQPNAVIWGALLGG--CKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 180 ~~~~l~~~~~--~~~~~~~a~~~~~~~-------~-----~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 238 (331)
++-.++.+.. +.+..+++.+.++++ . ..|-..+|..++.. +...|+++.+...++.+..
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555443 445556666555432 1 12345566666665 4567777777776666644
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.87 E-value=37 Score=22.27 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 043124 25 ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97 (331)
Q Consensus 25 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 97 (331)
+.++++...+.|+- +......+-.+-...|+.+.|.+++..+. .| ...|..+++++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 55778888888854 55555555444456789999999998887 54 3468889999999888766643
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=64.06 E-value=87 Score=26.28 Aligned_cols=111 Identities=14% Similarity=-0.033 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhhcCCC---CCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 158 VEEGRRRFLSMTCGYSI---TPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 158 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
.+.|.+.|+.......- ..++.....+.....+.|+.+.-..+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888887743121 345556666777777788766655555554445577777888899888889988888998
Q ss_pred HHHhcC-CCCcchHHHHHHHHHhcCCc--hHHHHHHHH
Q 043124 235 ELMILE-PNNSGYCTLLLNMYAEVSRW--AEVTKIRVA 269 (331)
Q Consensus 235 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~a~~~~~~ 269 (331)
.++..+ -..... ..++..+...+.. +.+.+.+..
T Consensus 226 ~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 888842 222333 3455555534443 566665553
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.54 E-value=63 Score=28.33 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC----CCC-------cHhHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Q 043124 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS----ITP-------EVEHYGCMVDLLSKAGLLEDALELIRSSKF--- 206 (331)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 206 (331)
+......++.++....++.+.....+.-..... ... .-.+...|++.++-.|++..|+++++.+.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 444444556666666666555554444321110 000 112445666777888999999999886431
Q ss_pred ------C-CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 207 ------Q-PNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 207 ------~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
. -.+.++..+.-+|...+++.+|.+.|...+-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1355677777788888999999999888766
No 415
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.51 E-value=23 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhC
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIG 71 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 71 (331)
+++..+.++.-.++|+++++.+.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34455555666777777777777766
No 416
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=49 Score=30.68 Aligned_cols=86 Identities=16% Similarity=0.005 Sum_probs=66.1
Q ss_pred HHHcCCHHHHHHHHHh-CCCCC-c------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 043124 188 LSKAGLLEDALELIRS-SKFQP-N------AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~-~~~~p-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 259 (331)
..+..++..+.+.|.. +..-| | ......+--+|....+.|.|.++++++.+.+|.++-.-..+..+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3456788888888764 43222 1 23456666678899999999999999999999988776777888889999
Q ss_pred chHHHHHHHHHHhc
Q 043124 260 WAEVTKIRVAMKEL 273 (331)
Q Consensus 260 ~~~a~~~~~~m~~~ 273 (331)
-++|+.+.......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999998877643
No 417
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.88 E-value=80 Score=25.45 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=69.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHH-HHHHHHHHcCCH
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-CMVDLLSKAGLL 194 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 194 (331)
|.....++.|...|.+.+.. .|+. .-|..=+..+.+..+++.+..--.+.. .+.|+..--. .+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 44556788899988777764 5666 445566667778888888776666655 3466644333 344556677888
Q ss_pred HHHHHHHHhC-------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043124 195 EDALELIRSS-------KFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235 (331)
Q Consensus 195 ~~a~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 235 (331)
++|+..+.+. .+.|.......|..+=-..=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888777642 3445555566665553333334444454444
No 418
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=62.70 E-value=92 Score=26.11 Aligned_cols=42 Identities=10% Similarity=-0.002 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
++|+.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 444444444555544444444444444444445555554443
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.65 E-value=17 Score=28.79 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=45.1
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 275 (331)
..+.++.+.+.+++.+++++.|.....|..+...-.+.|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45677888888888888888888777888888888888888888888888876543
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.62 E-value=1.1e+02 Score=26.89 Aligned_cols=198 Identities=11% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHhh--HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhhCCHHHHHHHHhh
Q 043124 26 LDAFNEMKNSGISPDQVT--MATVLSACAHLGALDLGREIHLYVMQIGFDIDVY--IGSALVDMYAKCGSLDRSLLVFFK 101 (331)
Q Consensus 26 ~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 101 (331)
.++++.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. ....-+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred cCCCChhhHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCcHHHHHHHHHhhhhcCCCCC
Q 043124 102 LREKNLFCWN---SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI--SVLSACTHAGLVEEGRRRFLSMTCGYSITP 176 (331)
Q Consensus 102 ~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (331)
-...+..... +.+...+..|+. ++++.+.+.|..|+..... +.+...+..|+.+-+..+++.-. .+..
T Consensus 91 ~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~---~~~~ 163 (413)
T PHA02875 91 GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA---CLDI 163 (413)
T ss_pred CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---CCCC
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
....-.+.+...+..|+.+-+.-+++.-. -..+.....+++...+..|+.+-+.-+++
T Consensus 164 ~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.45 E-value=46 Score=26.89 Aligned_cols=56 Identities=7% Similarity=-0.085 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhc---CC---CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 215 ALLGGCKLHRNLEIAHIAVNELMIL---EP---NNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 215 ~l~~~~~~~~~~~~a~~~~~~~~~~---~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
.+..-|...|++++|.++|+.+... +. -...+...+..++.+.|+.+....+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444477777777777777777541 11 11233345666677777777766655444
No 422
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.60 E-value=1.4e+02 Score=28.01 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=82.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc-------hHHHHHHHHHHHhCCCCchh---HHH
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL-------DLGREIHLYVMQIGFDIDVY---IGS 80 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~---~~~ 80 (331)
++|-.|.++|++++|.++.....+. .......+...+..+....+- +....-|++..+.....|+. +|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 4788899999999999999665544 455566777788887664322 34444455444432211322 333
Q ss_pred HHHHHHHhhCCHHH----HHHH--Hh--hcCCC--------Chhh---------------------HHHHHHHHHhCCCH
Q 043124 81 ALVDMYAKCGSLDR----SLLV--FF--KLREK--------NLFC---------------------WNSIIEGLAVHGFA 123 (331)
Q Consensus 81 ~l~~~~~~~g~~~~----a~~~--~~--~~~~~--------~~~~---------------------~~~li~~~~~~~~~ 123 (331)
.+..+=.......+ .++. |+ -+.+. +..+ .-.....+.-.|++
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqF 274 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLLLTGQF 274 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHHHTT-H
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHhhH
Confidence 33111110000100 1111 00 00000 0001 11223445667888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH---cCCHHHHHHH
Q 043124 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK---AGLLEDALEL 200 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 200 (331)
+.|.+.+.+ ..+...+.+++...+..+.-.+-.+... ..+.....-.|....+..||..|++ ..+..+|.+.
T Consensus 275 E~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~Y 349 (613)
T PF04097_consen 275 EAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQY 349 (613)
T ss_dssp HHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHHHHHH
T ss_pred HHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHHH
Confidence 888888877 2223556666666555544332222211 2222111111122557778888876 4577888888
Q ss_pred HHhCC
Q 043124 201 IRSSK 205 (331)
Q Consensus 201 ~~~~~ 205 (331)
+--+.
T Consensus 350 ~~li~ 354 (613)
T PF04097_consen 350 LYLIC 354 (613)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 76554
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.05 E-value=14 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHHhCCCCc
Q 043124 55 GALDLGREIHLYVMQIGFDID 75 (331)
Q Consensus 55 ~~~~~a~~~~~~~~~~~~~~~ 75 (331)
|.-..|-.+|+.|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344444555555555555554
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.09 E-value=23 Score=21.43 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=11.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHH
Q 043124 46 TVLSACAHLGALDLGREIHLYVM 68 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~ 68 (331)
.++.++...|++++|.++.+.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555443
No 425
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.98 E-value=19 Score=29.94 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHcCCHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 189 SKAGLLEDALELIRS-SKFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
.+.|+.++|..+|+. +.+.|+ +.....+....-..+++-+|-.++-+++...|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 356666667666664 334443 2222222222334455666666666666666665544
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.86 E-value=30 Score=19.60 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=19.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 150 (331)
.+.|-.+++...+++|.+.|+-.+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666666666666666555555555443
No 427
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=59.57 E-value=15 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHhcCccC
Q 043124 304 SDEIYSSLSKLDEQLKLASYVP 325 (331)
Q Consensus 304 ~~~~~~~l~~l~~~~~~~g~~p 325 (331)
...+...|..+|..+++.||.|
T Consensus 14 ~~~~~~iL~~Vy~AL~EKGYnP 35 (79)
T PF06135_consen 14 EKEIREILKQVYAALEEKGYNP 35 (79)
T ss_pred hhhHHHHHHHHHHHHHHcCCCh
Confidence 4577888999999999999998
No 428
>PRK10941 hypothetical protein; Provisional
Probab=58.69 E-value=1e+02 Score=25.36 Aligned_cols=72 Identities=13% Similarity=-0.013 Sum_probs=39.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHH----HhCCCCCcHHHHHHHHHHH
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELI----RSSKFQPNAVIWGALLGGC 220 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~p~~~~~~~l~~~~ 220 (331)
+.+-.+|.+.++++.|.++.+.+. . +.|+ +.-+.--.-.|.+.|.+..|..=+ ++.+-.|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll-~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALL-Q--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 345556667777777777777766 2 2333 334444444566777777665433 3344445555555544443
No 429
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.72 E-value=1.5e+02 Score=27.05 Aligned_cols=24 Identities=13% Similarity=0.591 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356777888888888888888885
No 430
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=57.64 E-value=95 Score=24.67 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=51.9
Q ss_pred CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC---chhHH--HHHHHHHHhhCCHHHHHHHHhhcCC----CChh
Q 043124 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI---DVYIG--SALVDMYAKCGSLDRSLLVFFKLRE----KNLF 108 (331)
Q Consensus 38 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~ 108 (331)
.+...-++.|+--|.....+.+|...|. ...|+.| +...+ ..-|......|++++|.+....+.. .|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 4455555555555544444555555553 3344444 22222 2346667788888888888776652 3432
Q ss_pred hHHHH----HHHHHhCCCHHHHHHHHHHH
Q 043124 109 CWNSI----IEGLAVHGFAHEALAMFDRM 133 (331)
Q Consensus 109 ~~~~l----i~~~~~~~~~~~a~~~~~~m 133 (331)
.+..+ +--+.+.|..++|++..+.=
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222 22345677778888777654
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.61 E-value=73 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=10.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYEN 137 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~ 137 (331)
+..+...+++-.|.++++++.+.+
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhC
Confidence 333333333344444444444443
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.45 E-value=82 Score=25.46 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=35.9
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCC----CCCcHhHHHHHHHHHHHcCCHHHHHHHH
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYS----ITPEVEHYGCMVDLLSKAGLLEDALELI 201 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 201 (331)
.+...|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.+..+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456677777888888888877654332 2344555666667777777777766553
No 433
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.06 E-value=52 Score=21.42 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=25.3
Q ss_pred hhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHH
Q 043124 88 KCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 126 (331)
...+.+++.++++.+..++..+|..+..++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 334566677777777777777777777777666654433
No 434
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.00 E-value=1.1e+02 Score=25.39 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=12.2
Q ss_pred HHHHHhccCcHHHHHHHHHhhh
Q 043124 148 VLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
.+..+...|++..|++++....
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455566666666655554
No 435
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.75 E-value=1.4e+02 Score=26.91 Aligned_cols=103 Identities=8% Similarity=0.030 Sum_probs=73.2
Q ss_pred HHHHhhCCHHHHHHHHhhcCC---C---------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCc---
Q 043124 84 DMYAKCGSLDRSLLVFFKLRE---K---------NLFCWNSIIEGLAVHGFAHEALAMFDRMIY-------ENVEPN--- 141 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~---~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~p~--- 141 (331)
..+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445667999999998876531 1 123578888888888888887777777663 354442
Q ss_pred --------HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 142 --------GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 142 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
..+|| ..-.+...|++-.|.+.|......+ ..++..|-.|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 24455 3345778899999999999988554 556778888888775
No 436
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.65 E-value=49 Score=27.69 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCchHHHHHHHH
Q 043124 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTL-LLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 209 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~ 269 (331)
|+..|...+.-..+.|-+.+...++.+++..+|.+...|.. -..-|...++++.+..+|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh
Confidence 44444444444444555666666666666666666655432 22334455666666666555
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.15 E-value=22 Score=21.52 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH
Q 043124 11 TMITCYSQNKQFREALDAFNEMKN 34 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~ 34 (331)
.+|.++.+.|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468999999999999999988865
No 438
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=55.86 E-value=70 Score=22.58 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=9.4
Q ss_pred HHHHhcCCchHHHHHHHH
Q 043124 252 NMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 252 ~~~~~~g~~~~a~~~~~~ 269 (331)
.++...|+.++|...|+.
T Consensus 108 ~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 344555666666655553
No 439
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.68 E-value=1.1e+02 Score=24.93 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=46.3
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchH-HHHHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC-TLLLNMYA 255 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~ 255 (331)
++.....+...|.+.|++.+|..-|-.-. .|+...+..++......|. |.+...| ...+-.|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHHH
Confidence 56677778888889998888887765443 3333333223333222232 3323333 34455677
Q ss_pred hcCCchHHHHHHHHHHhc
Q 043124 256 EVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~~~ 273 (331)
-.|+...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788888888888777654
No 440
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.66 E-value=63 Score=22.94 Aligned_cols=40 Identities=5% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 043124 229 AHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 229 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
..++|..|.. ++-..+.+|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455666655 445556666777777777777777777765
No 441
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.58 E-value=53 Score=22.70 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
++..+.++...++|+++.+.|.+.| ..+...-+.|-..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566677888888888888877 3344444444333
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.87 E-value=60 Score=21.47 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=11.8
Q ss_pred HHHHhccCcHHHHHHHHHhhh
Q 043124 149 LSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~ 169 (331)
.......|++++|...+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334455566666666666554
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.03 E-value=1.1e+02 Score=24.35 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
++.++...|+.+.|+.+++.+.-.. .+......++.. ...+.+.+|+.+-+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 5555555666666666665542211 112222222222 34456666665555544
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.61 E-value=1.4e+02 Score=25.38 Aligned_cols=53 Identities=8% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHH
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELI 201 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 201 (331)
.-+..+.|+..+|.+.++.+.++..+..-...-..|+.++....-+.++..++
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667777777777776644432222334455666666665555555444
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.35 E-value=1.4e+02 Score=25.35 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=28.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGV---TFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+.-+..+.|+..+|.+.|+.+.+. .|-.. ....++.+|....-+.....++-+.-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445566777777777666544 12211 22346666666555555555544443
No 446
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=53.30 E-value=45 Score=23.01 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 043124 12 MITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA 56 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 56 (331)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 334444444445555555555555444444444444444444443
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.50 E-value=1.4e+02 Score=28.17 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccCc
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYEN--VEPNGVTFISVLSACTHAGL 157 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~ 157 (331)
+|..+|...|++-.+.++++.....+ -+.-...+|..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 44455555555555555555544332 11122334444444444444
No 448
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.26 E-value=1.4e+02 Score=25.06 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 128 AMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 128 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
++|+.|...++.|.-.+|.-+.-.+.+.=.+...+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555566665555555555555555666666666655
No 449
>PRK12798 chemotaxis protein; Reviewed
Probab=52.20 E-value=1.7e+02 Score=25.82 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=111.6
Q ss_pred hCCHHHHHHHHhhcCCC----ChhhHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCcHH
Q 043124 89 CGSLDRSLLVFFKLREK----NLFCWNSIIEGLA-VHGFAHEALAMFDRMIYENVEPNG----VTFISVLSACTHAGLVE 159 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~ 159 (331)
.|+-.++.+.+..+... ....|-.|+.+-. ...++..|++.|+...-. .|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999988753 4456777776654 456799999999998754 3332 22333344567889988
Q ss_pred HHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043124 160 EGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAG---LLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNE 235 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 235 (331)
++..+-.....++...|= ...+..+..++.+.+ ..+.-..++..|.-.--...|..+.+.-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877666665544433332 223333344444433 3344455555554222356788888889999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHH-----hcCCchHHHHHHHHHHhcC
Q 043124 236 LMILEPNNSGYCTLLLNMYA-----EVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 236 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~~ 274 (331)
+..+....... ...+..|. -..+++++.+.+..+....
T Consensus 283 A~~L~~~~~~~-~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 283 ALKLADPDSAD-AARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHhccCCCcc-hHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 98854322211 22333332 2345666666655554433
No 450
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.81 E-value=53 Score=27.78 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=25.0
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 269 (331)
...|++..|+.=...++..+|.+...|..=..++....++++|....++
T Consensus 130 ~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 130 LYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555554444555555555555444444
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.59 E-value=52 Score=20.18 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=26.3
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 106 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
....++.++...++..-.++++..+.++...|. .+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 344555566666655556666666666666653 345555555554444
No 452
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.06 E-value=1.4e+02 Score=24.92 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhCCCHH
Q 043124 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--NLFCWNSIIEGLAVHGFAH 124 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~ 124 (331)
++....+..+.....+.++.+... ..-...+..+...|++..|+++..+..+- ....|+.+=.. ..+++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~v------~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L---~~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKTV------QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHL---SSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHH---hHHHH
Confidence 444455555555555555555432 22334566777889999998887766532 11111111111 11222
Q ss_pred HHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhccCcHHHHHHHHH
Q 043124 125 EALAMFDRMIYEN-----VEPNGVTFISVLSACTHAGLVEEGRRRFL 166 (331)
Q Consensus 125 ~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 166 (331)
+-....+++.+.. ..-|+..|..+..+|.-.|+...+..-+.
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333333322211 14678889999999998888776654333
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.93 E-value=72 Score=24.45 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 043124 217 LGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLL 251 (331)
Q Consensus 217 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 251 (331)
+..|.+.|.+++|.+++++..+ +|++...-.-|.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 3458999999999999999988 777665533333
No 454
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.80 E-value=1.2e+02 Score=23.58 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCC------ChhhHHHHHH-HHHhCCC--HHHHHHHHHHHHHc
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREK------NLFCWNSIIE-GLAVHGF--AHEALAMFDRMIYE 136 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~ 136 (331)
+..+-.....|++++|..-++++.+. -...|..+.. +++.++. +-+|..++.-+...
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 33344455567777777666655421 2223444433 4444443 44555555554443
No 455
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.29 E-value=2.1e+02 Score=29.21 Aligned_cols=156 Identities=11% Similarity=0.036 Sum_probs=97.8
Q ss_pred HHHHhCCCHHHHHH------HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhh------cCCCCCcHhHHH
Q 043124 115 EGLAVHGFAHEALA------MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC------GYSITPEVEHYG 182 (331)
Q Consensus 115 ~~~~~~~~~~~a~~------~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~ 182 (331)
......|.+.+|.+ ++......-.++....|..+...+.+.++.++|+..=....- ..+.+-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33445666776666 555322222355677788888889999999998876544220 111122355666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC----C-----CCCcHHH-HHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCC---Cc
Q 043124 183 CMVDLLSKAGLLEDALELIRSS----K-----FQPNAVI-WGALLGGCKLHRNLEIAHIAVNELMI-----LEPN---NS 244 (331)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~----~-----~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~ 244 (331)
.+.......++...|...+.+. . ..|.... ++.+-..+...++++.|.++.+.+.+ ..|. +.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6766667777887777776532 1 3455433 34443335566899999999999977 2333 34
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 245 GYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
..|..+.+.+...+++..|....+.-
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 55677888888888888776665543
No 456
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.98 E-value=2.4e+02 Score=27.03 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=57.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC
Q 043124 116 GLAVHGFAHEALAMFDRMIYENVEPNGV--TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193 (331)
Q Consensus 116 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (331)
++..-|+-++|..+.++|.... .|-.. -.-.+..+|+..|+.....+++.-.. .++.-|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aV--sD~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV--SDVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccc--cccchHHHHHHHHHheeeEecC
Confidence 3444555666666666666542 22111 11234455666666666666655544 2334445555555555555566
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHH--HHHhhcCCHHHHHHHHHHHHh
Q 043124 194 LEDALELIRSSK--FQPNAVIWGALL--GGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 194 ~~~a~~~~~~~~--~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~ 238 (331)
++....+..-+. .+|.+..-.++. -+|+..| ..+|..+++.+..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 666555544322 234333222222 2233333 3456666666544
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.69 E-value=87 Score=23.60 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=24.6
Q ss_pred HcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCH
Q 043124 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194 (331)
Q Consensus 135 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (331)
+.|+..+..-. .++..+...++.-.|.++++.+. ..+...+..|.-.-+..+.+.|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444443332 23333333344445555555555 333333333322234455555544
No 458
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=49.46 E-value=84 Score=25.75 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=49.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.++...++++.|.+..++.+..+|.++.-..--+.+|.+.|...-|..-+....+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 44888999999999999999999998877777889999999999999998887654
No 459
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.43 E-value=76 Score=20.79 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 27 DAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 27 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
++|+-....|+..|+..|..++......-.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777777666555566666666666544
No 460
>PRK05473 hypothetical protein; Provisional
Probab=48.24 E-value=28 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhcCccC
Q 043124 306 EIYSSLSKLDEQLKLASYVP 325 (331)
Q Consensus 306 ~~~~~l~~l~~~~~~~g~~p 325 (331)
.+...|..+|..+.+.||.|
T Consensus 19 ~v~eiL~~Vy~AL~EKGYNP 38 (86)
T PRK05473 19 DVREILTTVYDALEEKGYNP 38 (86)
T ss_pred HHHHHHHHHHHHHHHcCCCh
Confidence 67888999999999999998
No 461
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.04 E-value=1.5e+02 Score=24.19 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=43.4
Q ss_pred HHHhCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHHccCCch-HHHHHHHHHHH---hCCC--CchhHHHHHHH
Q 043124 15 CYSQNKQFREALDA----FNEMKNSGISPDQVTMATVLSACAHLGALD-LGREIHLYVMQ---IGFD--IDVYIGSALVD 84 (331)
Q Consensus 15 ~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~l~~ 84 (331)
.+.+.|+...|-++ .+...+.+.++|......++..+...+.-+ .-..+.+.+++ .+-. -+...+..+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 45556665554443 344444566666666566666554443221 12233333322 2211 25667777778
Q ss_pred HHHhhCCHHHHHHHHhhcCCC
Q 043124 85 MYAKCGSLDRSLLVFFKLREK 105 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~ 105 (331)
.|.+.|++.+|+..|-.-..+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HH
T ss_pred HHHhhccHHHHHHHHHhcCCh
Confidence 888888888777766554433
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.99 E-value=1.7e+02 Score=24.58 Aligned_cols=106 Identities=10% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCC--------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 043124 92 LDRSLLVFFKLRE--------KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 92 ~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 163 (331)
.+.|.+.|+.... .++.....+.....+.|..+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556666665442 1333455556666667765554444444443 3456666777888888888888888
Q ss_pred HHHhhhhcCC-CCCcHhHHHHHHHHHHHcCCH--HHHHHHHHh
Q 043124 164 RFLSMTCGYS-ITPEVEHYGCMVDLLSKAGLL--EDALELIRS 203 (331)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~ 203 (331)
+++... ..+ +.+. ... .++..+...+.. +.+.+++.+
T Consensus 223 ~l~~~l-~~~~v~~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLL-SNDKVRSQ-DIR-YVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHH-CTSTS-TT-THH-HHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHc-CCcccccH-HHH-HHHHHHhcCChhhHHHHHHHHHH
Confidence 888887 333 4433 233 334444433433 667776653
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.46 E-value=1.3e+02 Score=23.31 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=33.0
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCC--------------CCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSI--------------TPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
++-.|.+.-+|.++.++++.+.+ ..+ .+-...-|.-...+.+.|.++.|+.++++.
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45566677777777777777662 221 222334455555566667777776666653
No 464
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.15 E-value=81 Score=20.77 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCch
Q 043124 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN--NSGYCTLLLNMYAEVSRWA 261 (331)
Q Consensus 209 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 261 (331)
|...-..+...+...|+++.|.+.+-.++..+|+ +...-..|+..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456666777788888888888888888886654 3555567777777777644
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.12 E-value=48 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMK 33 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~ 33 (331)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456667777789999988887763
No 466
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.52 E-value=3.4e+02 Score=27.72 Aligned_cols=148 Identities=9% Similarity=0.075 Sum_probs=86.6
Q ss_pred HHHhCCChhHHHHHHHHHHHC-----------------------CCCCCH-----hhHHHHHHHHHccCCchHHHHHHHH
Q 043124 15 CYSQNKQFREALDAFNEMKNS-----------------------GISPDQ-----VTMATVLSACAHLGALDLGREIHLY 66 (331)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~-----------------------~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~ 66 (331)
+|...|...+|+.+|.+.... |-.|.+ .-|...++.+-+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 366677788888887765431 222221 2256677777778888888888777
Q ss_pred HHHhCCCCc----hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhCCCHH------------HHHH
Q 043124 67 VMQIGFDID----VYIGSALVDMYAKCGSLDRSLLVFFKLREK--NLFCWNSIIEGLAVHGFAH------------EALA 128 (331)
Q Consensus 67 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~------------~a~~ 128 (331)
+++. ++++ ..+++++.+.....|.+-+|.+.+-.-... ...+...++..++..|.++ +...
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~ 1087 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVED 1087 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHH
Confidence 7665 3332 346677778888888888887766544321 2234555666666666543 3444
Q ss_pred -HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHH
Q 043124 129 -MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 129 -~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 163 (331)
+++..-.....-....|..|-..+...+++.+|-.
T Consensus 1088 ~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1088 FLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 33332222222223445655566677777776544
No 467
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.44 E-value=1.8e+02 Score=24.67 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHhhhh---cCCCCCcHhHHHHHHHHHH-----HcCCHHHHHHHHHhCC---CCCcH
Q 043124 142 GVTFISVLSACTHAGLVEEGRRRFLSMTC---GYSITPEVEHYGCMVDLLS-----KAGLLEDALELIRSSK---FQPNA 210 (331)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~---~~p~~ 210 (331)
..........|++.||.+.|.+.+++..+ ..|.+.|+..+..-+..+. -....++|..++++-| -+.-.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555667778888888888887776542 2355566555544333322 2345666777777654 11112
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.+|..+- |....++.+|-.+|-+.+.
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3333332 4456678888888777766
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.91 E-value=2e+02 Score=24.92 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=44.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-ccCcHHHHHHHHHhhh
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT-HAGLVEEGRRRFLSMT 169 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 169 (331)
.|..+.+.|-+..|+++.+-+...+..-|+......|..|+ +.++++--+++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 46678889999999999999998875547777777777664 6777877777777765
No 469
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.79 E-value=3.5e+02 Score=27.77 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhhcC---CC--------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Q 043124 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLR---EK--------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE-----N 137 (331)
Q Consensus 74 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 137 (331)
+....|..|...+-+.|+.++|...-.... ++ +...|..+.......++...|...+.+.... |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 344556666666667777777666543321 11 2234555544445555555565555554432 1
Q ss_pred --CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 138 --VEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 138 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
.||...+++.+-..+...++.+.|.++++.+.
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESAL 1084 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 23334444433333444455666665555544
No 470
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.79 E-value=40 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=20.8
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 47 VLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
++......+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 334444444455555666555555544444433333455555543
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.29 E-value=43 Score=20.55 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=23.9
Q ss_pred CCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 39 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
|+...++.++...+.-.-.+.++..+.++.+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555553 344444444444433
No 472
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.62 E-value=1.8e+02 Score=23.97 Aligned_cols=128 Identities=10% Similarity=-0.009 Sum_probs=79.4
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHH-HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 194 LEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLE-IAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 194 ~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
+.+-++.+.++. ...|-..|+.==......|++. .-+++.+.|+..+..+.++|..--.++..-+.++.-+.+..++
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444445555431 1224444433222233445655 6678888888888888888888888888888899999999999
Q ss_pred HhcCCCCCCCccc-----eEEeCCEEEEeecC---------CCCCCCchHHHHHHHHHHHHHHhcCcc
Q 043124 271 KELGIEKRCPGSS-----WIEMERKVYQFAAS---------DKSHPASDEIYSSLSKLDEQLKLASYV 324 (331)
Q Consensus 271 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~p~~~~~~~~l~~l~~~~~~~g~~ 324 (331)
.+..+.-+ +++. +........+.... -...|++..++.-|.-++.. +.|+.
T Consensus 174 le~Di~NN-SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~--d~gl~ 238 (318)
T KOG0530|consen 174 LEEDIRNN-SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL--DSGLS 238 (318)
T ss_pred HHHhhhcc-chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh--ccCCc
Confidence 88888766 4443 11111111101100 17789999999998888765 56654
No 473
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.56 E-value=83 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHH
Q 043124 109 CWNSIIEGLAVHGFA-HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGR 162 (331)
Q Consensus 109 ~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 162 (331)
.|..++++---+.+- --|.+.++.+ .+|.-|+.+++..|+.+...
T Consensus 296 vWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 296 VWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 577777654333221 1233333333 35677888888888877554
No 474
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.10 E-value=3e+02 Score=26.51 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=54.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISP---DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (331)
|+-+.+.+.+++|++.-+.... ..| -.......+..+...|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3456677778888776655432 233 2344556667777777777777766655543 344444444445554
Q ss_pred CCHHHHHHHHhhcCC-CChhhHHHHHHHHHh
Q 043124 90 GSLDRSLLVFFKLRE-KNLFCWNSIIEGLAV 119 (331)
Q Consensus 90 g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~ 119 (331)
++......++-.-.. -+...|..++..+..
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 444333222211111 144566666666655
No 475
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.90 E-value=1.3e+02 Score=22.03 Aligned_cols=62 Identities=10% Similarity=0.207 Sum_probs=39.7
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHc-cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 30 NEMKNSGISPDQVTMATVLSACAH-LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 30 ~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+.+.+.|++++..-. .++..+.. .+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345666777665544 34444444 345778899999998887665655544556677766654
No 476
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.79 E-value=2.3e+02 Score=25.08 Aligned_cols=234 Identities=12% Similarity=-0.055 Sum_probs=127.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
|+++...| +.+...+-...... ++...+.....++.. ++-..+...+-.... .++..+....+.++...+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~-~~~~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLA-QEDALDLRSVLAVLQ---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhc-cCChHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCch
Confidence 66777777 56677666666432 344444444444433 232232233322222 34555777888888888877
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC
Q 043124 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172 (331)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 172 (331)
+-...+..-+...+.......+.++...+. .+...+....+ .++...-...+.+++..+..+. ...+..+. .
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a-~~~L~~al-~- 188 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLS-ESTLRLYL-R- 188 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccc-hHHHHHHH-c-
Confidence 666666666666677666666666665442 23444444443 4566666667777777776533 33344444 1
Q ss_pred CCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
.++..+-..-+.+....|. .+|...+......++......+...+...|.. ++...+..+.+- |. +-...+.
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d-~~---vr~~a~~ 260 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQA-AA---TRREALR 260 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-hHHHHHHHHhcC-hh---hHHHHHH
Confidence 3455555556677777887 66666655422234444434444444333333 555555444432 22 3345666
Q ss_pred HHHhcCCchHHHHHHHHH
Q 043124 253 MYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 253 ~~~~~g~~~~a~~~~~~m 270 (331)
++.+.|+...+--+.+.|
T Consensus 261 AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHcCCcchHHHHHHHh
Confidence 666777766555555544
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.66 E-value=1.2e+02 Score=21.61 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCc-hhHHHHHHHHHHhhCCHHHHHHHHh
Q 043124 60 GREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFF 100 (331)
Q Consensus 60 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 100 (331)
..++|..|.+.|+... ...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444555554444322 2223334444444555555555443
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.53 E-value=64 Score=22.22 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 158 (331)
.++..+...+.+-.|.++++.+.+.+...+..|.--.+..+...|-.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555566667788888887776666666655566666666543
No 479
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.19 E-value=1.6e+02 Score=26.08 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred HhCCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 202 RSSKFQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 202 ~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
....++|. ..+...-+..+.+.+++..|-.+.++++++.|..
T Consensus 290 Thc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 290 THCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 34455554 4456667777889999999999999999998864
No 480
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.05 E-value=63 Score=29.97 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhc
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~ 102 (331)
.-.-++..|.+.|-.+.|.++.+.+
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555555555555555555444
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.75 E-value=2.1e+02 Score=24.17 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=26.9
Q ss_pred HCCCCCCHhhHHHHHH-HHHccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHH
Q 043124 34 NSGISPDQVTMATVLS-ACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVF 99 (331)
Q Consensus 34 ~~~~~p~~~~~~~l~~-~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 99 (331)
..| .|.+..++.|.+ .+.+.| -..-|.++|+..+... ..+.++..+.+.+.-++-+++|
T Consensus 159 ~nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff 219 (412)
T KOG2297|consen 159 SNG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF 219 (412)
T ss_pred hCC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc
Confidence 345 455566666554 233333 2233445554443221 2345555555544444444443
No 482
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.60 E-value=1.7e+02 Score=23.28 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---cHHHHH--HHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEP---NGVTFI--SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGC 183 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 183 (331)
-+|.|+--|.-...+.+|-+.|.. +.|+.| +..++. .-|......|+++.|+...+.+. ..-+..|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccchhHHHH
Confidence 344554444444445555555543 234444 233332 34556677777777777776655 1122222212222
Q ss_pred HHH----HHHHcCCHHHHHHHHHh
Q 043124 184 MVD----LLSKAGLLEDALELIRS 203 (331)
Q Consensus 184 l~~----~~~~~~~~~~a~~~~~~ 203 (331)
|.. =+.+.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 13466677777777664
No 483
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.41 E-value=39 Score=21.48 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.7
Q ss_pred CCchHHHHHHHHHHHHHHhcCccC
Q 043124 302 PASDEIYSSLSKLDEQLKLASYVP 325 (331)
Q Consensus 302 p~~~~~~~~l~~l~~~~~~~g~~p 325 (331)
+....+-..|..+|..+.+.||.|
T Consensus 15 ~~~~~v~e~L~~VY~sL~ekGYNp 38 (88)
T COG4472 15 SDKKDVKETLNDVYNSLEEKGYNP 38 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHcCCCh
Confidence 555677888999999999999998
No 484
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.96 E-value=2.2e+02 Score=24.18 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
+.-+.++++.++.+ +-+.......+..+.+..+.+...+.|+++...+ +-+...|...+...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHH
Confidence 34455666666553 3445555556666666666666666666666332 22455555555443
No 485
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.90 E-value=3.1e+02 Score=26.05 Aligned_cols=223 Identities=8% Similarity=-0.096 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhCCCHHHHHHH
Q 043124 55 GALDLGREIHLYVMQIG-FDID--VYIGSALVDMYAKCGSLDRSLLVFFKLREK--NLFCWNSIIEGLAVHGFAHEALAM 129 (331)
Q Consensus 55 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~ 129 (331)
.+.+.|...+....... +.+. ..+...+.......+...++...+...... +......-+....+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34466666666543322 2111 122333333333332245556666554332 333444444455577778777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCC-----------C--------CcHh------HHHHH
Q 043124 130 FDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSI-----------T--------PEVE------HYGCM 184 (331)
Q Consensus 130 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~--------~~~~------~~~~l 184 (331)
+..|-... .-...-.--+.+++...|+.++|...|+.+....++ + |... .-..-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 77764432 222233334566666678888887777776532111 1 0000 00111
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCch
Q 043124 185 VDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE---PNNSGYCTLLLNMYAEVSRWA 261 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 261 (331)
+..+...|....|...+..+....+......+.......|..+.+..........+ -.-+..|...+..+.+.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 23445667777776666554323454555555555667777777777665443311 112334666777777766777
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043124 262 EVTKIRVAMKELGIEKR 278 (331)
Q Consensus 262 ~a~~~~~~m~~~~~~~~ 278 (331)
.++-.----.|.++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 76644444457777777
No 486
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=41.62 E-value=2e+02 Score=23.59 Aligned_cols=88 Identities=22% Similarity=0.151 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-------chHHHHHHH
Q 043124 181 YGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS-------GYCTLLLNM 253 (331)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~ 253 (331)
|-.++-.|.|.-+...--.+|...| .|. .|+..|.+.|+++.|-.++--+....+.+. ..-..|+..
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~ 229 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM 229 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 4445555666666666666777776 443 477788889999999887766655443222 223457777
Q ss_pred HHhcCCchHHHHHHHHHHhcC
Q 043124 254 YAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 254 ~~~~g~~~~a~~~~~~m~~~~ 274 (331)
....|+|+-+.++.+-+...+
T Consensus 230 a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 230 ALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHhcccHHHHHHHHHHHHHhC
Confidence 888999999999998877544
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.48 E-value=1.8e+02 Score=27.46 Aligned_cols=48 Identities=6% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCCch
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNSG--ISPDQVTMATVLSACAHLGALD 58 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~ 58 (331)
+|..+|..+|++.++.++++.....+ -+.=...+|.-++...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 78999999999999999999987652 2223456788888888888774
No 488
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.36 E-value=65 Score=28.65 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=55.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTM-ATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS 91 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 91 (331)
...+...+.++.|..++.+..+. .||...| ..-..++.+.+++..|+.=...+++.. +--...|.--..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 45566778888888888888875 5554443 334467778888888888777777654 1122233333344555566
Q ss_pred HHHHHHHHhhcC
Q 043124 92 LDRSLLVFFKLR 103 (331)
Q Consensus 92 ~~~a~~~~~~~~ 103 (331)
..+|...|+...
T Consensus 88 ~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 88 FKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHhh
Confidence 666666666554
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.53 E-value=1.7e+02 Score=25.00 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPN---NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 277 (331)
++.-=+...-..--.+++...+..++..-|+ -..+|.++++.....|.+++++.+|++....|..|
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
No 490
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.40 E-value=1.3e+02 Score=21.28 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHH-------HHHHhCC-CCCc-HHHHHHHHH----HHhhcCCHHHHHHHHHHHHh
Q 043124 178 VEHYGCMVDLLSKAGLLEDAL-------ELIRSSK-FQPN-AVIWGALLG----GCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~-------~~~~~~~-~~p~-~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~ 238 (331)
...+..|..++...|++++++ ..|++-+ ++-| ...|-..+- ++-..|+.++|...|+..-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 445667777888888887764 4455544 3333 444443332 36678999999988887654
No 491
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.30 E-value=68 Score=26.91 Aligned_cols=77 Identities=6% Similarity=0.007 Sum_probs=43.8
Q ss_pred CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHH-HHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 043124 174 ITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGA-LLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL 250 (331)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 250 (331)
+.-|+..|...+..-.+.|.+.+.-.++.+. ..+|+ +..|-. --.-+...++++.+..+|.+.++.+|+++..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445666665555555556666666665542 33443 333321 11114567778888888888888777777665543
No 492
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=4e+02 Score=26.57 Aligned_cols=61 Identities=10% Similarity=-0.106 Sum_probs=31.8
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHh----CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRS----SKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
|..++..-...+...|++..|++++.+ .+-.++...|-.++..+...|-- ....+++.+..
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~~~ 1294 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNWMR 1294 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhhee
Confidence 444454445555666777777666543 33455555565555555544433 33344444433
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.35 E-value=88 Score=18.93 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=5.4
Q ss_pred CCCHHHHHHHHHHH
Q 043124 120 HGFAHEALAMFDRM 133 (331)
Q Consensus 120 ~~~~~~a~~~~~~m 133 (331)
.|++=+|-++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444443
No 494
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.09 E-value=3.4e+02 Score=25.58 Aligned_cols=184 Identities=10% Similarity=0.001 Sum_probs=96.4
Q ss_pred HhhCCHHHHHHHHhhcCCC-----C-------hhhHHHHHHHHHhCCCHHHHHHHHH--------HHHHcCCCCcHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREK-----N-------LFCWNSIIEGLAVHGFAHEALAMFD--------RMIYENVEPNGVTFI 146 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~-----~-------~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~ 146 (331)
+-.|++..|...+..+.+. + +..+...+-.+...|+.+.|+..|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3468888888888877631 1 2334444445667899999999998 343444444444433
Q ss_pred HH--HHHHh--ccCcHHH--HHHHHHhhhhcCCCCCc--HhHHHHH-HHHHHHcC---------CHHHHHHHH-HhCCCC
Q 043124 147 SV--LSACT--HAGLVEE--GRRRFLSMTCGYSITPE--VEHYGCM-VDLLSKAG---------LLEDALELI-RSSKFQ 207 (331)
Q Consensus 147 ~l--l~~~~--~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~~---------~~~~a~~~~-~~~~~~ 207 (331)
.+ +-.+. ...+.++ +..+++.+.....-.|+ ..++..+ +.++.... .+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 11112 2222333 77788777633232332 3333433 33332211 223334444 333311
Q ss_pred CcHHHHHHHHHH-HhhcCCHHHHHHHHHHHHh---cCCCCc-chH-----HHHHHHHHhcCCchHHHHHHHHHH
Q 043124 208 PNAVIWGALLGG-CKLHRNLEIAHIAVNELMI---LEPNNS-GYC-----TLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 208 p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~---~~p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
--......++.. +. .|+..+..+....... ..|+.. ..| ..+...+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111222334444 33 6887777666666554 223322 222 345566888999999999887764
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.05 E-value=4.1e+02 Score=26.54 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=38.2
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
+...-...+.++...|..+.+...+...-..++...=...+.++...+.. ++...+..++. +|+ ...-...+.++.+
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~-D~~-~~VR~~A~~aL~~ 864 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALVEALT-DPH-LDVRKAAVLALTR 864 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHHHHhc-CCC-HHHHHHHHHHHhc
Confidence 44455555556666655444333232222234443334444455544432 23333333332 222 3333444555554
Q ss_pred cCCchHHHHHHHHH
Q 043124 257 VSRWAEVTKIRVAM 270 (331)
Q Consensus 257 ~g~~~~a~~~~~~m 270 (331)
.+.-..+...+...
T Consensus 865 ~~~~~~a~~~L~~a 878 (897)
T PRK13800 865 WPGDPAARDALTTA 878 (897)
T ss_pred cCCCHHHHHHHHHH
Confidence 42223444444443
No 496
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.03 E-value=3.2e+02 Score=25.38 Aligned_cols=58 Identities=12% Similarity=-0.010 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 77 YIGSALVDMYAKCGSLDRSLLVFFKLREKN-LFCWNSIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
..+..|++.+.. =+.+.-.++++++.. . ...+..++++....|-.....-+.+.+...
T Consensus 311 ~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 311 AKFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 344444444332 233444444444433 2 345555556666655555444444444443
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.77 E-value=1.1e+02 Score=20.02 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=41.1
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
+...|..-++.....+ .+++ ++|+-....|+..|..+|..+++...-.=-.+...++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4455555544332222 2333 788888888999999999998887776666666667766664
No 498
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=38.51 E-value=1.5e+02 Score=21.30 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=28.4
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 257 (331)
+...-+.+.|..+|+++++..|+.......||..+...
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 44455679999999999999999998888888877553
No 499
>PRK09857 putative transposase; Provisional
Probab=38.42 E-value=2.3e+02 Score=23.66 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+..++.-....++.++..++++...+..|........+..-+.+.|.-+++..+.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667777777787777776665555556777888888888889999999999888754
No 500
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.92 E-value=2.1e+02 Score=22.84 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=23.1
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
++.++...|+.+.|..+++.+. - ...+......++.. ..++.+.+|+.+.+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~-p--~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG-P--PLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC-C--CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 4444444555555555555544 1 11112222222222 4445555555555543
Done!