Query 043124
Match_columns 331
No_of_seqs 418 out of 2876
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 23:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.2E-32 4.2E-37 242.0 21.6 185 6-191 26-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2E-31 6.9E-36 234.3 20.8 199 23-222 7-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 9.9E-29 3.4E-33 224.0 31.6 281 4-316 303-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.6E-27 1.2E-31 213.8 30.4 265 2-274 80-437 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.5E-24 8.7E-29 184.9 33.1 309 3-319 64-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7E-24 2.4E-28 182.1 32.4 309 4-320 31-354 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.9E-23 1.7E-27 180.2 30.3 311 3-321 23-379 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 177.7 32.2 266 3-273 57-358 (450)
9 3hym_B Cell division cycle pro 99.9 7.1E-22 2.4E-26 165.4 29.2 280 4-315 20-314 (330)
10 3ieg_A DNAJ homolog subfamily 99.9 2E-20 6.9E-25 158.2 33.4 308 5-320 2-355 (359)
11 1fch_A Peroxisomal targeting s 99.9 7E-21 2.4E-25 162.0 24.3 262 5-270 63-356 (368)
12 4eqf_A PEX5-related protein; a 99.9 5.8E-21 2E-25 162.5 22.7 261 4-269 63-352 (365)
13 3cv0_A Peroxisome targeting si 99.9 1.1E-20 3.7E-25 158.0 21.5 262 5-271 20-313 (327)
14 1fch_A Peroxisomal targeting s 99.9 5.4E-20 1.8E-24 156.5 23.3 289 15-321 34-346 (368)
15 2gw1_A Mitochondrial precursor 99.9 5.2E-20 1.8E-24 163.5 23.7 263 5-273 5-367 (514)
16 2gw1_A Mitochondrial precursor 99.9 1.5E-19 5.3E-24 160.5 24.3 267 3-274 36-402 (514)
17 4eqf_A PEX5-related protein; a 99.9 1.3E-19 4.6E-24 154.1 22.4 263 40-320 64-342 (365)
18 3hym_B Cell division cycle pro 99.8 9.8E-19 3.4E-23 146.2 26.5 255 4-261 54-322 (330)
19 3mkr_A Coatomer subunit epsilo 99.8 3E-19 1E-23 146.9 21.6 245 13-272 6-263 (291)
20 3fp2_A TPR repeat-containing p 99.8 3.2E-18 1.1E-22 152.9 30.0 263 6-274 25-408 (537)
21 3fp2_A TPR repeat-containing p 99.8 2.6E-18 8.9E-23 153.5 23.4 267 3-273 56-457 (537)
22 3mkr_A Coatomer subunit epsilo 99.8 8.1E-18 2.8E-22 138.3 24.4 246 8-267 36-288 (291)
23 3cv0_A Peroxisome targeting si 99.8 8.5E-18 2.9E-22 140.3 23.0 262 40-320 20-301 (327)
24 1b89_A Protein (clathrin heavy 99.8 1.2E-19 4.1E-24 153.4 10.6 233 6-268 32-264 (449)
25 3ieg_A DNAJ homolog subfamily 99.8 5.3E-17 1.8E-21 137.1 26.5 268 3-274 34-336 (359)
26 3uq3_A Heat shock protein STI1 99.8 8.3E-18 2.8E-22 135.5 20.4 225 6-240 5-237 (258)
27 3spa_A Mtrpol, DNA-directed RN 99.8 8.2E-20 2.8E-24 166.4 9.1 151 38-192 124-286 (1134)
28 3uq3_A Heat shock protein STI1 99.8 3.6E-17 1.2E-21 131.7 22.6 220 41-273 5-236 (258)
29 2pl2_A Hypothetical conserved 99.8 5.1E-17 1.7E-21 127.8 19.7 196 73-271 2-212 (217)
30 1b89_A Protein (clathrin heavy 99.8 4.9E-19 1.7E-23 149.6 8.1 218 18-271 15-234 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.8 5.9E-19 2E-23 160.8 8.6 122 75-197 126-255 (1134)
32 3u4t_A TPR repeat-containing p 99.8 1.3E-16 4.5E-21 129.7 21.7 248 7-258 4-269 (272)
33 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.8E-16 6.1E-21 129.0 21.7 243 16-267 15-269 (275)
34 2h6f_A Protein farnesyltransfe 99.8 2.3E-16 7.7E-21 134.2 21.7 248 5-257 96-366 (382)
35 3sf4_A G-protein-signaling mod 99.8 4.2E-17 1.4E-21 140.3 17.5 297 3-321 6-363 (406)
36 2pl2_A Hypothetical conserved 99.8 1.9E-16 6.5E-21 124.5 19.8 196 3-204 2-211 (217)
37 3u4t_A TPR repeat-containing p 99.7 5.5E-16 1.9E-20 126.0 22.4 229 41-273 3-250 (272)
38 1ouv_A Conserved hypothetical 99.7 5.5E-15 1.9E-19 120.3 26.1 223 5-274 5-252 (273)
39 1ouv_A Conserved hypothetical 99.7 4.1E-15 1.4E-19 121.1 24.9 186 5-203 37-247 (273)
40 2h6f_A Protein farnesyltransfe 99.7 1.1E-15 3.7E-20 130.0 21.1 246 41-318 97-366 (382)
41 2ho1_A Type 4 fimbrial biogene 99.7 5.5E-15 1.9E-19 118.7 24.3 203 41-246 37-245 (252)
42 2q7f_A YRRB protein; TPR, prot 99.7 4E-16 1.4E-20 124.5 17.0 209 41-253 23-236 (243)
43 4a1s_A PINS, partner of inscut 99.7 2.2E-16 7.5E-21 136.3 16.6 266 7-273 49-372 (411)
44 2q7f_A YRRB protein; TPR, prot 99.7 3.9E-16 1.3E-20 124.6 16.9 196 75-273 22-222 (243)
45 2vq2_A PILW, putative fimbrial 99.7 6.3E-15 2.1E-19 116.0 23.0 192 78-271 10-209 (225)
46 2ho1_A Type 4 fimbrial biogene 99.7 4.6E-15 1.6E-19 119.1 22.4 197 76-274 37-239 (252)
47 3ro2_A PINS homolog, G-protein 99.7 3E-16 1E-20 131.1 15.9 267 6-273 5-332 (338)
48 2vq2_A PILW, putative fimbrial 99.7 6.6E-15 2.2E-19 115.9 22.8 207 6-247 8-219 (225)
49 4g1t_A Interferon-induced prot 99.7 4.6E-14 1.6E-18 124.0 27.1 269 5-276 50-366 (472)
50 2xm6_A Protein corresponding t 99.7 6.1E-13 2.1E-17 117.6 32.4 255 5-274 38-326 (490)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.1E-15 1.1E-19 121.6 15.1 218 52-273 16-244 (275)
52 3vtx_A MAMA; tetratricopeptide 99.7 3.6E-14 1.2E-18 108.3 20.1 165 106-273 4-170 (184)
53 2xm6_A Protein corresponding t 99.6 1.4E-12 4.7E-17 115.3 31.6 254 5-273 74-360 (490)
54 2ond_A Cleavage stimulation fa 99.6 1.6E-13 5.5E-18 113.7 24.1 236 5-244 7-275 (308)
55 4g1t_A Interferon-induced prot 99.6 1.6E-13 5.3E-18 120.6 23.3 265 7-276 137-462 (472)
56 4abn_A Tetratricopeptide repea 99.6 1.3E-14 4.5E-19 127.5 16.0 209 57-270 84-318 (474)
57 3nf1_A KLC 1, kinesin light ch 99.6 4.8E-15 1.6E-19 122.6 12.1 165 5-169 26-222 (311)
58 3nf1_A KLC 1, kinesin light ch 99.6 3.2E-15 1.1E-19 123.7 10.8 234 40-273 26-307 (311)
59 1xi4_A Clathrin heavy chain; a 99.6 1.6E-12 5.3E-17 122.9 26.7 235 5-268 1104-1340(1630)
60 3vtx_A MAMA; tetratricopeptide 99.6 4.6E-13 1.6E-17 102.1 19.4 162 5-169 4-168 (184)
61 1hz4_A MALT regulatory protein 99.6 7.7E-12 2.6E-16 106.4 28.4 264 10-273 18-322 (373)
62 4abn_A Tetratricopeptide repea 99.6 2.1E-13 7.1E-18 119.9 18.2 198 92-320 84-307 (474)
63 2ooe_A Cleavage stimulation fa 99.6 4.6E-12 1.6E-16 113.1 27.3 147 125-274 304-455 (530)
64 3ulq_A Response regulator aspa 99.6 6.1E-13 2.1E-17 113.7 20.6 227 12-238 109-367 (383)
65 1xi4_A Clathrin heavy chain; a 99.6 3.9E-12 1.3E-16 120.2 27.0 230 10-271 1053-1307(1630)
66 4gyw_A UDP-N-acetylglucosamine 99.5 2.5E-13 8.6E-18 124.3 18.7 163 107-272 9-173 (723)
67 2ond_A Cleavage stimulation fa 99.5 4E-12 1.4E-16 105.3 24.4 213 58-275 33-272 (308)
68 3sf4_A G-protein-signaling mod 99.5 2.6E-13 8.9E-18 116.5 17.8 236 38-273 6-296 (406)
69 4i17_A Hypothetical protein; T 99.5 4.3E-13 1.5E-17 106.0 17.5 205 75-316 6-225 (228)
70 4a1s_A PINS, partner of inscut 99.5 1.4E-13 4.9E-18 118.6 15.8 231 42-273 49-332 (411)
71 3ulq_A Response regulator aspa 99.5 3.3E-13 1.1E-17 115.4 17.6 226 47-273 109-368 (383)
72 3ro2_A PINS homolog, G-protein 99.5 1.6E-13 5.4E-18 114.5 14.5 232 42-273 6-292 (338)
73 3as5_A MAMA; tetratricopeptide 99.5 1.2E-12 4.1E-17 99.4 17.6 161 77-272 9-172 (186)
74 2ooe_A Cleavage stimulation fa 99.5 4.5E-11 1.5E-15 106.7 28.8 211 59-274 256-493 (530)
75 4i17_A Hypothetical protein; T 99.5 4.1E-12 1.4E-16 100.3 19.7 205 38-253 4-223 (228)
76 3as5_A MAMA; tetratricopeptide 99.5 6E-12 2E-16 95.5 19.9 159 41-203 8-169 (186)
77 3q15_A PSP28, response regulat 99.5 9.2E-12 3.2E-16 106.2 20.6 226 13-238 108-364 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.5 3.3E-12 1.1E-16 117.0 17.9 162 5-169 8-172 (723)
79 3e4b_A ALGK; tetratricopeptide 99.4 4E-11 1.4E-15 104.7 23.9 254 6-275 69-353 (452)
80 3edt_B KLC 2, kinesin light ch 99.4 1.1E-12 3.8E-17 106.7 12.9 152 18-169 13-196 (283)
81 1qqe_A Vesicular transport pro 99.4 1.2E-11 4E-16 101.7 18.7 197 48-244 44-274 (292)
82 3q15_A PSP28, response regulat 99.4 1.3E-11 4.6E-16 105.2 17.7 225 47-272 107-364 (378)
83 3edt_B KLC 2, kinesin light ch 99.4 9.7E-12 3.3E-16 101.0 16.0 218 56-273 23-281 (283)
84 3mv2_B Coatomer subunit epsilo 99.4 1.9E-10 6.4E-15 93.4 20.4 238 13-272 20-281 (310)
85 1qqe_A Vesicular transport pro 99.4 1.3E-10 4.3E-15 95.5 19.8 201 7-210 38-273 (292)
86 3qky_A Outer membrane assembly 99.4 1.4E-10 4.9E-15 93.4 19.6 206 75-321 14-248 (261)
87 1hz4_A MALT regulatory protein 99.3 4E-10 1.4E-14 95.8 22.6 230 44-273 17-282 (373)
88 3e4b_A ALGK; tetratricopeptide 99.3 8.4E-10 2.9E-14 96.3 23.4 255 7-276 107-390 (452)
89 4ga2_A E3 SUMO-protein ligase 99.3 9.7E-12 3.3E-16 91.4 8.5 142 148-319 3-148 (150)
90 3qky_A Outer membrane assembly 99.3 4.8E-10 1.6E-14 90.3 18.7 167 3-170 12-223 (261)
91 2fo7_A Synthetic consensus TPR 99.3 5.2E-10 1.8E-14 79.8 15.9 128 110-272 4-131 (136)
92 3qou_A Protein YBBN; thioredox 99.2 6.6E-10 2.3E-14 90.9 18.3 177 92-272 102-283 (287)
93 2fo7_A Synthetic consensus TPR 99.2 4.3E-10 1.5E-14 80.2 15.3 95 180-274 3-99 (136)
94 2yhc_A BAMD, UPF0169 lipoprote 99.2 9.6E-10 3.3E-14 86.5 18.5 184 76-276 4-216 (225)
95 2pzi_A Probable serine/threoni 99.2 3.6E-10 1.2E-14 103.7 18.1 149 17-169 402-561 (681)
96 2pzi_A Probable serine/threoni 99.2 7.9E-11 2.7E-15 108.1 13.0 169 87-259 402-583 (681)
97 3mv2_B Coatomer subunit epsilo 99.2 1.1E-09 3.7E-14 89.0 17.9 179 60-246 85-289 (310)
98 4ga2_A E3 SUMO-protein ligase 99.2 2E-11 6.9E-16 89.7 7.2 143 114-259 4-149 (150)
99 3urz_A Uncharacterized protein 99.2 1E-09 3.5E-14 85.2 16.8 183 9-216 7-196 (208)
100 3urz_A Uncharacterized protein 99.2 2.6E-09 8.9E-14 82.9 18.7 181 43-243 6-190 (208)
101 2ifu_A Gamma-SNAP; membrane fu 99.2 7E-10 2.4E-14 91.7 14.9 219 19-265 4-253 (307)
102 2r5s_A Uncharacterized protein 99.2 1.1E-09 3.7E-14 82.6 14.4 159 110-272 9-172 (176)
103 3rjv_A Putative SEL1 repeat pr 99.2 4.7E-09 1.6E-13 81.7 18.1 158 108-274 19-198 (212)
104 2vsy_A XCC0866; transferase, g 99.1 1.1E-09 3.7E-14 98.6 16.1 160 89-251 2-169 (568)
105 3qou_A Protein YBBN; thioredox 99.1 2.8E-09 9.6E-14 87.2 16.9 157 76-236 117-281 (287)
106 2vsy_A XCC0866; transferase, g 99.1 2.6E-09 8.8E-14 96.1 17.1 147 54-204 2-154 (568)
107 3dra_A Protein farnesyltransfe 99.1 2.1E-07 7.1E-12 76.2 26.4 230 18-252 45-301 (306)
108 4e6h_A MRNA 3'-END-processing 99.1 5.1E-08 1.7E-12 88.5 24.4 242 7-254 303-584 (679)
109 4gco_A Protein STI-1; structur 99.1 2.5E-09 8.5E-14 75.9 12.5 94 179-272 14-109 (126)
110 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.3E-08 4.4E-13 80.0 17.3 185 5-204 3-210 (225)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.1 6.6E-09 2.3E-13 80.7 15.5 128 5-137 5-151 (213)
112 3rjv_A Putative SEL1 repeat pr 99.1 2.2E-08 7.4E-13 78.0 18.2 170 24-203 4-193 (212)
113 2r5s_A Uncharacterized protein 99.1 4.2E-09 1.4E-13 79.4 13.6 52 50-102 15-66 (176)
114 3u3w_A Transcriptional activat 99.1 4.4E-08 1.5E-12 80.3 20.9 161 112-272 80-265 (293)
115 3dra_A Protein farnesyltransfe 99.0 1E-07 3.5E-12 78.0 21.7 216 53-272 45-286 (306)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.6E-08 5.5E-13 78.5 16.1 128 109-242 8-153 (213)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 1.1E-08 3.8E-13 84.4 15.2 196 19-231 29-253 (307)
118 2c2l_A CHIP, carboxy terminus 99.0 2.1E-09 7.1E-14 87.6 9.9 51 223-273 148-199 (281)
119 2vgx_A Chaperone SYCD; alterna 99.0 5.3E-09 1.8E-13 76.4 10.8 97 177-273 20-118 (148)
120 2qfc_A PLCR protein; TPR, HTH, 99.0 3.1E-08 1.1E-12 81.2 16.7 164 109-272 77-265 (293)
121 3gyz_A Chaperone protein IPGC; 98.9 1.1E-08 3.8E-13 74.8 11.6 101 174-274 31-134 (151)
122 3u3w_A Transcriptional activat 98.9 3.2E-07 1.1E-11 75.1 21.4 202 28-238 33-265 (293)
123 4gco_A Protein STI-1; structur 98.9 3E-08 1E-12 70.2 12.6 109 143-253 14-124 (126)
124 1a17_A Serine/threonine protei 98.9 4.1E-08 1.4E-12 72.7 14.0 127 144-272 15-145 (166)
125 4f3v_A ESX-1 secretion system 98.9 1.3E-07 4.4E-12 75.8 17.4 192 53-250 18-247 (282)
126 2lni_A Stress-induced-phosphop 98.9 3.2E-08 1.1E-12 70.3 12.6 94 178-271 16-111 (133)
127 2qfc_A PLCR protein; TPR, HTH, 98.9 1E-07 3.5E-12 78.1 16.6 164 40-203 74-262 (293)
128 2vyi_A SGTA protein; chaperone 98.9 3.6E-08 1.2E-12 69.6 12.2 118 141-260 11-130 (131)
129 1na0_A Designed protein CTPR3; 98.9 6.4E-08 2.2E-12 67.7 13.3 115 142-258 9-125 (125)
130 2c2l_A CHIP, carboxy terminus 98.9 2.3E-08 7.8E-13 81.4 11.9 189 40-238 3-198 (281)
131 2lni_A Stress-induced-phosphop 98.9 5.6E-08 1.9E-12 69.0 12.7 118 140-259 14-133 (133)
132 3sz7_A HSC70 cochaperone (SGT) 98.9 2.8E-08 9.6E-13 73.8 11.4 106 141-248 10-117 (164)
133 3upv_A Heat shock protein STI1 98.9 3.8E-08 1.3E-12 69.5 11.5 96 178-273 4-101 (126)
134 1na0_A Designed protein CTPR3; 98.8 1.2E-07 4.1E-12 66.2 13.6 94 6-101 9-102 (125)
135 2vyi_A SGTA protein; chaperone 98.8 9.3E-08 3.2E-12 67.4 13.0 117 177-320 11-129 (131)
136 2e2e_A Formate-dependent nitri 98.8 1.2E-08 4.2E-13 76.8 8.7 122 119-243 22-148 (177)
137 3gyz_A Chaperone protein IPGC; 98.8 4.7E-08 1.6E-12 71.4 11.5 123 9-143 12-138 (151)
138 3q7a_A Farnesyltransferase alp 98.8 6.4E-06 2.2E-10 68.2 25.4 238 9-251 57-344 (349)
139 1a17_A Serine/threonine protei 98.8 1.5E-07 5.2E-12 69.6 14.5 124 44-169 16-144 (166)
140 2xcb_A PCRH, regulatory protei 98.8 7.2E-08 2.5E-12 69.7 11.8 96 178-273 18-115 (142)
141 1p5q_A FKBP52, FK506-binding p 98.8 6.6E-08 2.3E-12 80.8 13.2 130 142-271 147-292 (336)
142 1elw_A TPR1-domain of HOP; HOP 98.8 2.5E-07 8.4E-12 63.9 14.0 93 179-271 5-99 (118)
143 4f3v_A ESX-1 secretion system 98.8 1.7E-07 5.9E-12 75.1 14.3 182 88-274 18-238 (282)
144 3gw4_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 73.1 12.6 21 147-167 112-132 (203)
145 4e6h_A MRNA 3'-END-processing 98.8 5.2E-07 1.8E-11 82.0 18.9 216 59-276 327-573 (679)
146 3gw4_A Uncharacterized protein 98.8 6.6E-08 2.3E-12 74.2 11.2 151 88-238 4-175 (203)
147 2vgx_A Chaperone SYCD; alterna 98.8 3.3E-08 1.1E-12 72.1 8.9 115 129-246 9-125 (148)
148 2fbn_A 70 kDa peptidylprolyl i 98.8 8E-09 2.7E-13 79.4 5.9 171 82-273 10-186 (198)
149 2dba_A Smooth muscle cell asso 98.8 2.7E-07 9.3E-12 66.7 13.4 94 178-271 28-126 (148)
150 2e2e_A Formate-dependent nitri 98.7 1.2E-07 4.1E-12 71.2 11.5 112 89-203 23-140 (177)
151 2fbn_A 70 kDa peptidylprolyl i 98.7 3.3E-08 1.1E-12 75.9 8.0 140 152-320 14-171 (198)
152 1p5q_A FKBP52, FK506-binding p 98.7 2.6E-07 8.9E-12 77.2 13.7 129 40-169 146-292 (336)
153 2kck_A TPR repeat; tetratricop 98.7 1.9E-07 6.6E-12 63.9 10.7 98 178-275 6-108 (112)
154 3dss_A Geranylgeranyl transfer 98.7 1.4E-05 4.7E-10 65.9 23.1 243 7-254 27-319 (331)
155 4gcn_A Protein STI-1; structur 98.7 4.2E-07 1.4E-11 64.3 12.0 99 44-145 11-119 (127)
156 1elw_A TPR1-domain of HOP; HOP 98.7 7.9E-07 2.7E-11 61.3 13.4 108 144-253 6-115 (118)
157 3q7a_A Farnesyltransferase alp 98.7 3.7E-06 1.3E-10 69.6 19.2 219 50-272 63-330 (349)
158 3q49_B STIP1 homology and U bo 98.7 4E-07 1.4E-11 65.0 12.1 98 176-273 7-106 (137)
159 3rkv_A Putative peptidylprolyl 98.7 2.4E-07 8.3E-12 68.5 10.9 85 210-321 63-148 (162)
160 2xcb_A PCRH, regulatory protei 98.7 4.2E-07 1.4E-11 65.6 11.6 94 42-136 19-115 (142)
161 3upv_A Heat shock protein STI1 98.7 5.9E-07 2E-11 63.3 12.2 108 144-253 6-121 (126)
162 4b4t_Q 26S proteasome regulato 98.6 1.6E-06 5.4E-11 74.9 17.2 191 48-238 11-244 (434)
163 2dba_A Smooth muscle cell asso 98.6 1.1E-06 3.8E-11 63.4 13.8 111 141-254 27-143 (148)
164 4gcn_A Protein STI-1; structur 98.6 2E-07 6.9E-12 65.9 9.4 93 180-272 10-111 (127)
165 1hxi_A PEX5, peroxisome target 98.6 2.1E-07 7.2E-12 65.2 9.2 94 180-273 19-114 (121)
166 3q49_B STIP1 homology and U bo 98.6 9.3E-07 3.2E-11 63.1 12.7 96 5-102 8-103 (137)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 9.8E-07 3.3E-11 65.3 13.2 92 109-203 13-104 (164)
168 2uy1_A Cleavage stimulation fa 98.6 2.8E-05 9.7E-10 68.3 24.4 89 181-270 289-380 (493)
169 2kck_A TPR repeat; tetratricop 98.6 3.4E-07 1.1E-11 62.6 9.8 96 5-102 5-103 (112)
170 4b4t_Q 26S proteasome regulato 98.6 4.3E-06 1.5E-10 72.2 18.6 192 13-204 11-242 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.6 8.4E-07 2.9E-11 62.4 11.6 96 178-273 4-108 (131)
172 3dss_A Geranylgeranyl transfer 98.6 2.3E-05 7.8E-10 64.6 21.1 228 42-273 27-304 (331)
173 1hxi_A PEX5, peroxisome target 98.6 4.7E-07 1.6E-11 63.4 9.2 92 9-102 20-111 (121)
174 2xev_A YBGF; tetratricopeptide 98.5 1.1E-06 3.7E-11 62.0 10.8 89 184-272 8-104 (129)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 7.6E-07 2.6E-11 77.7 11.7 148 123-271 250-413 (457)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.3E-06 4.3E-11 76.3 12.9 129 107-238 268-414 (457)
177 2hr2_A Hypothetical protein; a 98.5 7.2E-07 2.4E-11 64.8 9.4 62 212-273 59-131 (159)
178 1wao_1 Serine/threonine protei 98.5 3.9E-07 1.3E-11 79.9 9.4 118 150-269 14-135 (477)
179 1elr_A TPR2A-domain of HOP; HO 98.5 2.1E-06 7.2E-11 60.3 11.6 92 44-136 7-108 (131)
180 3ro3_A PINS homolog, G-protein 98.5 7.3E-07 2.5E-11 65.3 9.3 63 7-69 10-77 (164)
181 1ihg_A Cyclophilin 40; ppiase 98.4 1.8E-06 6.3E-11 73.0 11.7 89 177-265 272-362 (370)
182 1ihg_A Cyclophilin 40; ppiase 98.4 2.4E-06 8.3E-11 72.2 11.9 114 180-320 225-356 (370)
183 2xev_A YBGF; tetratricopeptide 98.4 6.9E-06 2.4E-10 57.7 12.3 97 149-247 9-113 (129)
184 3ro3_A PINS homolog, G-protein 98.4 1.9E-06 6.5E-11 63.0 9.6 128 42-169 10-156 (164)
185 3k9i_A BH0479 protein; putativ 98.4 4.2E-07 1.4E-11 63.2 5.4 61 211-271 28-88 (117)
186 3n71_A Histone lysine methyltr 98.4 2.7E-06 9.1E-11 74.4 10.7 124 151-274 318-465 (490)
187 2l6j_A TPR repeat-containing p 98.3 7.4E-06 2.5E-10 55.8 11.1 64 209-272 3-66 (111)
188 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.6E-11 72.9 8.4 146 108-273 180-328 (338)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 5.3E-06 1.8E-10 69.3 11.0 91 78-169 232-326 (338)
190 3k9i_A BH0479 protein; putativ 98.3 1.5E-06 5.1E-11 60.3 6.3 91 155-246 3-97 (117)
191 1na3_A Designed protein CTPR2; 98.3 7.1E-06 2.4E-10 53.6 9.3 61 211-271 10-70 (91)
192 1wao_1 Serine/threonine protei 98.3 4E-07 1.4E-11 79.9 3.9 122 8-131 8-134 (477)
193 3rkv_A Putative peptidylprolyl 98.3 4.7E-06 1.6E-10 61.5 9.1 67 178-244 63-131 (162)
194 1dce_A Protein (RAB geranylger 98.2 0.00012 4E-09 65.6 19.0 184 57-262 45-244 (567)
195 2uy1_A Cleavage stimulation fa 98.2 0.00066 2.2E-08 59.6 23.1 203 23-238 196-412 (493)
196 3n71_A Histone lysine methyltr 98.2 6.4E-06 2.2E-10 72.0 9.8 120 51-170 319-463 (490)
197 2l6j_A TPR repeat-containing p 98.2 9.4E-07 3.2E-11 60.4 3.7 93 177-269 3-103 (111)
198 3ma5_A Tetratricopeptide repea 98.2 1E-05 3.4E-10 54.3 8.7 65 209-273 6-70 (100)
199 2hr2_A Hypothetical protein; a 98.2 3.1E-05 1.1E-09 56.2 11.2 61 9-69 14-85 (159)
200 1na3_A Designed protein CTPR2; 98.1 5E-05 1.7E-09 49.4 10.4 83 5-89 8-90 (91)
201 1klx_A Cysteine rich protein B 98.1 6.4E-05 2.2E-09 53.7 11.4 110 20-137 9-127 (138)
202 2kat_A Uncharacterized protein 98.1 1.5E-05 5E-10 54.9 7.6 77 197-273 4-82 (115)
203 1dce_A Protein (RAB geranylger 98.0 0.00028 9.7E-09 63.1 17.1 166 123-318 45-239 (567)
204 1klx_A Cysteine rich protein B 97.9 6.2E-05 2.1E-09 53.8 8.5 50 223-274 74-127 (138)
205 1zu2_A Mitochondrial import re 97.8 2.1E-05 7.3E-10 56.9 5.2 103 119-246 14-127 (158)
206 1zu2_A Mitochondrial import re 97.8 1E-05 3.5E-10 58.6 3.4 82 192-273 16-120 (158)
207 3qwp_A SET and MYND domain-con 97.8 6.8E-05 2.3E-09 64.5 9.0 116 185-319 294-427 (429)
208 2kc7_A BFR218_protein; tetratr 97.8 9.6E-05 3.3E-09 49.1 8.0 61 186-246 8-71 (99)
209 2kat_A Uncharacterized protein 97.8 0.00017 5.9E-09 49.4 9.3 78 24-103 3-80 (115)
210 3bee_A Putative YFRE protein; 97.8 0.00035 1.2E-08 45.9 10.2 68 208-275 4-74 (93)
211 3ma5_A Tetratricopeptide repea 97.7 9.8E-05 3.4E-09 49.3 7.1 61 108-169 8-68 (100)
212 1pc2_A Mitochondria fission pr 97.7 0.00016 5.3E-09 51.9 8.1 89 208-323 30-123 (152)
213 3qww_A SET and MYND domain-con 97.6 0.00011 3.8E-09 63.1 7.4 83 190-272 310-410 (433)
214 3ly7_A Transcriptional activat 97.5 0.0054 1.8E-07 50.9 15.5 138 106-244 193-344 (372)
215 3qww_A SET and MYND domain-con 97.5 0.00043 1.5E-08 59.5 9.0 93 154-246 310-423 (433)
216 3qwp_A SET and MYND domain-con 97.5 0.0014 4.8E-08 56.4 12.0 99 148-246 293-412 (429)
217 3mkq_A Coatomer beta'-subunit; 97.4 0.021 7.1E-07 53.3 19.8 156 14-205 607-763 (814)
218 3mkq_A Coatomer beta'-subunit; 97.3 0.005 1.7E-07 57.5 14.5 99 86-205 609-708 (814)
219 1wy6_A Hypothetical protein ST 97.3 0.021 7.2E-07 39.6 15.1 143 117-278 17-159 (172)
220 2kc7_A BFR218_protein; tetratr 97.3 0.0025 8.5E-08 41.9 9.1 54 148-203 6-60 (99)
221 3ly7_A Transcriptional activat 97.3 0.0064 2.2E-07 50.5 13.1 72 139-213 274-346 (372)
222 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0047 1.6E-07 41.4 10.1 65 208-272 3-74 (104)
223 1nzn_A CGI-135 protein, fissio 97.2 0.0025 8.5E-08 43.9 8.5 64 208-271 33-101 (126)
224 3mkq_B Coatomer subunit alpha; 97.1 0.035 1.2E-06 40.8 13.9 103 85-205 14-116 (177)
225 1y8m_A FIS1; mitochondria, unk 97.0 0.03 1E-06 39.3 12.3 92 206-324 35-130 (144)
226 3u64_A Protein TP_0956; tetrat 96.9 0.0054 1.8E-07 48.9 8.7 84 194-277 179-273 (301)
227 1pc2_A Mitochondria fission pr 96.8 0.0091 3.1E-07 42.7 8.7 88 157-246 13-107 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.7 0.017 5.9E-07 38.5 9.3 73 178-250 5-86 (104)
229 3bee_A Putative YFRE protein; 96.7 0.014 4.8E-07 38.1 8.3 68 3-71 3-73 (93)
230 3o48_A Mitochondria fission 1 96.4 0.06 2.1E-06 37.2 10.0 91 205-322 35-129 (134)
231 3lvg_A Clathrin heavy chain 1; 96.3 1.2E-07 4E-12 80.2 -22.2 241 7-270 55-317 (624)
232 3mkq_B Coatomer subunit alpha; 96.3 0.2 7E-06 36.7 17.7 129 49-205 13-142 (177)
233 4h7y_A Dual specificity protei 95.8 0.17 5.7E-06 35.9 10.2 50 90-139 74-126 (161)
234 3u64_A Protein TP_0956; tetrat 95.6 0.11 3.6E-06 41.6 9.8 62 76-137 199-270 (301)
235 1nzn_A CGI-135 protein, fissio 95.5 0.2 6.9E-06 34.4 9.8 89 157-247 16-111 (126)
236 4gns_B Protein CSD3, chitin bi 95.3 0.088 3E-06 48.3 9.4 53 219-271 346-398 (754)
237 2ff4_A Probable regulatory pro 95.1 0.089 3.1E-06 44.5 8.5 66 213-278 174-244 (388)
238 3lvg_A Clathrin heavy chain 1; 95.1 0.0072 2.5E-07 51.8 1.6 116 2-126 79-218 (624)
239 1wy6_A Hypothetical protein ST 94.9 0.59 2E-05 32.5 12.7 66 108-175 92-157 (172)
240 1v54_E Cytochrome C oxidase po 94.5 0.3 1E-05 31.9 7.6 63 122-186 25-87 (109)
241 3ffl_A Anaphase-promoting comp 94.3 0.97 3.3E-05 32.7 10.8 61 9-69 23-91 (167)
242 4ady_A RPN2, 26S proteasome re 94.1 1.2 4.1E-05 41.9 13.7 154 114-271 497-656 (963)
243 4b4t_P 26S proteasome regulato 93.9 2.2 7.7E-05 36.7 14.6 184 20-204 30-244 (445)
244 4fhn_B Nucleoporin NUP120; pro 93.5 6 0.00021 38.6 19.9 24 80-103 846-869 (1139)
245 1zbp_A Hypothetical protein VP 92.9 1.6 5.5E-05 34.4 10.8 120 115-245 5-135 (273)
246 2ff4_A Probable regulatory pro 92.9 0.63 2.2E-05 39.3 9.4 59 44-103 174-232 (388)
247 2uwj_G Type III export protein 92.5 1.4 4.7E-05 28.6 9.8 89 54-147 19-107 (115)
248 2y69_E Cytochrome C oxidase su 92.4 0.87 3E-05 31.5 7.6 63 122-186 68-130 (152)
249 2p58_C Putative type III secre 92.3 1.5 5.2E-05 28.5 10.4 89 54-147 20-108 (116)
250 1v54_E Cytochrome C oxidase po 92.2 1.6 5.4E-05 28.5 9.6 63 21-84 25-87 (109)
251 4gns_B Protein CSD3, chitin bi 92.2 1.5 5.1E-05 40.4 11.3 122 45-169 252-398 (754)
252 4ady_A RPN2, 26S proteasome re 91.9 8.7 0.0003 36.3 16.4 184 23-213 471-664 (963)
253 4h7y_A Dual specificity protei 91.8 2.5 8.6E-05 30.0 11.9 110 39-176 11-127 (161)
254 1qsa_A Protein (soluble lytic 91.4 7.8 0.00027 34.9 23.5 50 13-67 79-128 (618)
255 3ffl_A Anaphase-promoting comp 91.4 1.7 5.8E-05 31.4 8.6 55 81-135 25-91 (167)
256 3txn_A 26S proteasome regulato 90.8 6.6 0.00023 33.0 17.9 23 44-66 22-44 (394)
257 2y69_E Cytochrome C oxidase su 90.2 3.4 0.00012 28.6 9.4 45 59-103 71-115 (152)
258 3esl_A Checkpoint serine/threo 90.0 4.1 0.00014 30.5 9.8 55 224-278 93-149 (202)
259 4fhn_B Nucleoporin NUP120; pro 89.7 7 0.00024 38.2 14.1 191 80-272 816-1049(1139)
260 1zbp_A Hypothetical protein VP 88.2 1.3 4.6E-05 34.8 6.5 55 188-242 7-63 (273)
261 3lpz_A GET4 (YOR164C homolog); 87.5 11 0.00036 30.9 16.1 22 8-29 37-58 (336)
262 3o48_A Mitochondria fission 1 86.8 5.3 0.00018 27.6 8.1 17 186-202 86-102 (134)
263 2wpv_A GET4, UPF0363 protein Y 86.1 12 0.00042 30.2 15.2 25 106-130 133-157 (312)
264 4a1g_A Mitotic checkpoint seri 85.8 7.6 0.00026 27.6 9.1 50 229-278 84-135 (152)
265 4b4t_R RPN7, 26S proteasome re 84.6 3.9 0.00013 34.9 8.3 97 77-173 132-239 (429)
266 3lpz_A GET4 (YOR164C homolog); 84.6 15 0.00052 30.0 20.0 168 78-272 37-215 (336)
267 3esl_A Checkpoint serine/threo 83.5 11 0.00038 28.2 9.1 61 54-114 92-153 (202)
268 4b4t_R RPN7, 26S proteasome re 83.4 18 0.00063 30.8 11.9 94 43-136 133-237 (429)
269 1y8m_A FIS1; mitochondria, unk 82.7 10 0.00035 26.6 9.9 72 175-246 36-113 (144)
270 2wvi_A Mitotic checkpoint seri 82.2 12 0.00041 27.0 8.8 50 229-278 79-130 (164)
271 1wdy_A 2-5A-dependent ribonucl 77.5 23 0.00078 27.5 11.9 247 10-278 6-280 (285)
272 4b4t_P 26S proteasome regulato 77.3 34 0.0012 29.3 23.4 184 55-238 30-246 (445)
273 3txn_A 26S proteasome regulato 76.5 33 0.0011 28.8 20.4 263 7-275 20-345 (394)
274 3ltm_A Alpha-REP4; protein eng 76.2 21 0.00072 26.4 16.8 48 75-122 63-110 (211)
275 4a1g_A Mitotic checkpoint seri 75.7 19 0.00064 25.6 8.4 49 94-142 83-136 (152)
276 2d2s_A Exocyst complex compone 74.5 16 0.00054 28.2 7.9 89 11-102 23-117 (235)
277 2ion_A PDCD4, programmed cell 73.0 18 0.00061 25.7 7.3 64 79-142 12-80 (152)
278 4aez_C MAD3, mitotic spindle c 72.8 12 0.00043 28.4 6.7 49 229-277 133-183 (223)
279 2wpv_A GET4, UPF0363 protein Y 71.9 38 0.0013 27.4 18.5 113 78-201 35-157 (312)
280 2nsz_A Programmed cell death p 71.5 22 0.00074 24.4 8.6 64 79-142 10-78 (129)
281 3eu9_A Huntingtin-interacting 69.4 11 0.00038 28.4 6.2 82 191-273 152-236 (240)
282 4b4t_S RPN3, 26S proteasome re 67.4 33 0.0011 30.0 9.0 64 178-241 231-301 (523)
283 3ltj_A Alpharep-4; protein eng 67.3 34 0.0012 25.0 17.9 42 81-122 64-105 (201)
284 4b4t_S RPN3, 26S proteasome re 66.3 46 0.0016 29.1 9.7 64 7-70 232-299 (523)
285 3bqo_A Telomeric repeat-bindin 65.1 33 0.0011 25.5 7.2 27 220-246 127-153 (211)
286 3ltm_A Alpha-REP4; protein eng 64.5 40 0.0014 24.9 19.9 154 74-238 31-184 (211)
287 2nsz_A Programmed cell death p 64.4 26 0.00087 24.0 6.5 67 8-75 9-77 (129)
288 3kea_A K1L; tropism, ANK repea 61.8 56 0.0019 25.6 9.4 16 221-236 169-184 (285)
289 3ygs_P Procaspase 9; apoptosis 61.1 16 0.00053 23.6 4.6 66 62-129 25-90 (97)
290 3mv2_A Coatomer subunit alpha; 59.7 69 0.0024 26.0 9.7 42 201-242 196-239 (325)
291 4gq2_M Nucleoporin NUP120; bet 57.5 1.3E+02 0.0046 28.6 12.3 85 148-238 816-925 (950)
292 3kae_A CDC27, possible protein 56.1 56 0.0019 23.8 9.0 110 152-270 12-140 (242)
293 2ion_A PDCD4, programmed cell 55.6 23 0.00079 25.1 5.1 67 8-75 11-79 (152)
294 4gq2_M Nucleoporin NUP120; bet 54.4 1.5E+02 0.0052 28.3 12.4 128 82-224 816-950 (950)
295 1k1a_A B-cell lymphoma 3-encod 53.3 68 0.0023 23.9 9.1 26 14-39 14-39 (241)
296 2d2s_A Exocyst complex compone 52.4 54 0.0019 25.2 7.1 85 114-202 25-115 (235)
297 2wvi_A Mitotic checkpoint seri 51.1 66 0.0022 23.1 8.8 78 37-117 59-137 (164)
298 1oyz_A Hypothetical protein YI 50.4 86 0.0029 24.3 22.2 154 104-271 102-261 (280)
299 2fe3_A Peroxide operon regulat 49.5 53 0.0018 22.8 6.2 36 133-169 13-48 (145)
300 3kae_A CDC27, possible protein 47.6 80 0.0027 23.1 16.1 78 89-168 46-140 (242)
301 4aez_C MAD3, mitotic spindle c 46.5 95 0.0032 23.6 8.0 78 37-117 113-191 (223)
302 2zu6_B Programmed cell death p 46.3 1E+02 0.0034 24.9 8.0 23 10-32 7-29 (307)
303 3eiq_C Programmed cell death p 46.0 1E+02 0.0035 25.4 8.2 80 80-159 221-305 (358)
304 2p1h_A APAF-1, apoptotic prote 45.8 55 0.0019 20.7 6.8 63 60-126 24-86 (94)
305 2o03_A Probable zinc uptake re 45.0 45 0.0015 22.7 5.2 45 48-92 17-61 (131)
306 2uwj_G Type III export protein 44.9 62 0.0021 21.1 7.8 47 187-236 48-94 (115)
307 1wdy_A 2-5A-dependent ribonucl 44.4 1E+02 0.0036 23.5 9.0 216 46-278 7-247 (285)
308 1mzb_A Ferric uptake regulatio 43.8 75 0.0026 21.7 7.5 62 31-93 8-70 (136)
309 2p58_C Putative type III secre 43.5 66 0.0023 21.0 8.9 87 19-113 20-106 (116)
310 2b7e_A PRE-mRNA processing pro 43.5 18 0.0006 20.9 2.3 29 23-51 3-31 (59)
311 2xig_A Ferric uptake regulatio 43.3 82 0.0028 22.0 6.5 14 123-136 42-55 (150)
312 4ets_A Ferric uptake regulatio 42.8 60 0.0021 23.2 5.7 34 135-169 26-59 (162)
313 2w57_A Ferric uptake regulatio 42.5 85 0.0029 22.0 7.3 63 30-93 6-69 (150)
314 2fe3_A Peroxide operon regulat 42.5 83 0.0028 21.8 7.6 62 30-92 11-72 (145)
315 3mwm_A ZUR, putative metal upt 41.8 41 0.0014 23.3 4.6 59 34-93 7-65 (139)
316 3ltj_A Alpharep-4; protein eng 41.3 99 0.0034 22.4 21.1 153 74-237 26-178 (201)
317 3eu9_A Huntingtin-interacting 40.7 64 0.0022 23.9 6.1 213 5-235 6-232 (240)
318 3ljn_A Hypothetical protein; a 40.2 1.5E+02 0.005 24.0 9.3 220 39-269 16-266 (364)
319 3eyy_A Putative iron uptake re 40.2 89 0.0031 21.7 6.2 61 30-92 8-68 (145)
320 2ijq_A Hypothetical protein; s 38.8 1.1E+02 0.0036 22.0 7.3 51 19-69 45-103 (161)
321 2fu4_A Ferric uptake regulatio 37.7 67 0.0023 19.4 7.4 62 30-92 6-68 (83)
322 1qsa_A Protein (soluble lytic 37.5 2.3E+02 0.0078 25.5 22.7 218 10-238 106-347 (618)
323 2dod_A Transcription elongatio 37.4 38 0.0013 21.0 3.4 33 157-190 15-47 (82)
324 3kea_A K1L; tropism, ANK repea 37.3 1.3E+02 0.0045 23.4 7.6 15 86-100 69-83 (285)
325 2qx5_A Nucleoporin NIC96; mRNA 36.8 2.4E+02 0.0083 25.6 17.3 16 255-270 549-564 (661)
326 1mzb_A Ferric uptake regulatio 36.8 60 0.002 22.3 4.8 48 10-57 21-69 (136)
327 4ets_A Ferric uptake regulatio 36.6 1.1E+02 0.0039 21.7 6.7 70 22-92 13-85 (162)
328 3qil_A Clathrin heavy chain 1; 36.5 32 0.0011 23.2 3.1 49 46-97 37-85 (125)
329 3hra_A Ankyrin repeat family p 36.3 1.1E+02 0.0039 21.8 6.8 16 263-278 157-172 (201)
330 2ijq_A Hypothetical protein; s 35.4 1.2E+02 0.0041 21.7 7.2 17 119-135 87-103 (161)
331 2xig_A Ferric uptake regulatio 34.6 1.2E+02 0.004 21.2 8.3 63 29-92 15-77 (150)
332 2r9g_A AAA ATPase, central reg 33.6 1.5E+02 0.0051 22.1 8.3 17 20-36 28-44 (204)
333 2o03_A Probable zinc uptake re 33.4 65 0.0022 21.9 4.5 46 112-157 15-60 (131)
334 1ug3_A EIF4GI, eukaryotic prot 33.2 1.4E+02 0.0048 24.3 7.2 25 9-33 14-38 (339)
335 1ya0_A SMG-7 transcript varian 32.4 1.8E+02 0.0061 25.3 7.9 42 225-266 167-208 (497)
336 1k1a_A B-cell lymphoma 3-encod 31.8 1.5E+02 0.0053 21.8 7.0 183 83-278 13-210 (241)
337 3mwm_A ZUR, putative metal upt 31.4 57 0.002 22.5 4.0 46 112-157 18-63 (139)
338 2zu6_B Programmed cell death p 31.2 2E+02 0.007 23.0 12.4 106 213-325 169-278 (307)
339 3eyy_A Putative iron uptake re 30.8 90 0.0031 21.7 4.9 11 159-169 34-44 (145)
340 3ljn_A Hypothetical protein; a 30.2 89 0.003 25.4 5.7 152 75-236 17-196 (364)
341 1q02_A Sequestosome 1; helical 30.2 74 0.0025 17.6 3.7 38 194-233 10-47 (52)
342 3qye_A TBC1 domain family memb 30.1 2.2E+02 0.0074 23.0 11.0 71 62-132 209-287 (331)
343 2yru_A Steroid receptor RNA ac 30.0 82 0.0028 21.2 4.3 42 28-69 48-89 (118)
344 2qfz_A TBC1 domain family memb 29.3 1.4E+02 0.0049 24.2 6.7 44 62-105 230-273 (345)
345 1oai_A Nuclear RNA export fact 29.0 48 0.0016 19.0 2.6 22 156-177 34-55 (59)
346 1uzc_A Hypothetical protein FL 28.9 57 0.002 19.6 3.0 32 157-189 13-44 (71)
347 2qq8_A TBC1 domain family memb 28.5 1.3E+02 0.0045 24.4 6.2 42 62-103 214-255 (334)
348 2w57_A Ferric uptake regulatio 27.6 69 0.0024 22.4 3.9 47 11-57 21-68 (150)
349 3b7b_A Euchromatic histone-lys 27.5 49 0.0017 24.7 3.4 53 219-272 183-235 (237)
350 2cwy_A Hypothetical protein TT 26.8 1.2E+02 0.0041 19.3 4.5 50 18-69 13-67 (94)
351 3no6_A Transcriptional activat 26.6 2.2E+02 0.0075 21.9 8.1 26 2-27 125-151 (248)
352 2rg8_A Programmed cell death p 26.4 1.6E+02 0.0056 21.0 5.7 25 81-105 15-39 (165)
353 3f3f_C Nucleoporin NUP85; stru 26.3 2.3E+02 0.0078 25.2 7.4 70 56-126 496-568 (570)
354 1ug3_A EIF4GI, eukaryotic prot 26.2 2.6E+02 0.009 22.7 10.8 25 181-205 144-168 (339)
355 2qq8_A TBC1 domain family memb 25.7 1.2E+02 0.0041 24.6 5.5 33 171-203 221-253 (334)
356 1oyz_A Hypothetical protein YI 25.5 2.3E+02 0.0078 21.7 18.5 231 4-253 35-276 (280)
357 3ibx_A TENA, HP1287, putative 25.5 1.6E+02 0.0055 22.1 5.9 26 2-27 109-134 (221)
358 3rjo_A Endoplasmic reticulum a 25.3 3E+02 0.01 23.0 13.5 31 107-137 267-297 (419)
359 4b4t_O 26S proteasome regulato 25.0 3E+02 0.01 22.9 8.5 84 184-267 82-192 (393)
360 3aji_A 26S proteasome non-ATPa 24.9 2.1E+02 0.007 21.0 7.8 180 10-202 7-193 (231)
361 3t5v_B Nuclear mRNA export pro 24.6 3.3E+02 0.011 23.3 9.2 18 259-276 396-413 (455)
362 2pk8_A Uncharacterized protein 24.5 79 0.0027 20.1 3.1 24 304-327 15-38 (103)
363 3hzj_A Rabgap1L, RAB GTPase-ac 24.3 2.2E+02 0.0074 22.7 6.8 69 62-131 175-251 (310)
364 3bge_A Predicted ATPase; struc 23.8 2.3E+02 0.0078 21.1 7.2 34 19-52 20-53 (201)
365 2f6m_A Suppressor protein STP2 23.6 1.2E+02 0.0041 17.8 4.3 45 110-155 5-49 (65)
366 3us6_A Histidine-containing ph 23.6 1.9E+02 0.0067 20.2 7.7 41 145-189 10-50 (153)
367 2cfu_A SDSA1; SDS-hydrolase, l 23.5 2.1E+02 0.0071 26.0 7.0 43 216-258 455-497 (658)
368 1bd8_A P19INK4D CDK4/6 inhibit 23.0 79 0.0027 21.6 3.6 19 13-31 6-24 (156)
369 3qye_A TBC1 domain family memb 22.5 3E+02 0.01 22.1 10.3 25 28-52 51-77 (331)
370 3jxi_A Vanilloid receptor-rela 22.5 1.7E+02 0.0057 22.1 5.7 55 13-67 9-72 (260)
371 3t5v_B Nuclear mRNA export pro 22.4 1.7E+02 0.0058 25.1 5.9 22 114-135 227-248 (455)
372 1bpo_A Protein (clathrin); cla 21.9 3.9E+02 0.013 23.1 11.8 140 54-206 342-484 (494)
373 2qx5_A Nucleoporin NIC96; mRNA 21.8 4.5E+02 0.016 23.9 9.1 33 178-210 533-570 (661)
374 2crb_A Nuclear receptor bindin 21.6 1.1E+02 0.0038 19.5 3.4 24 247-270 18-41 (97)
375 3bqo_A Telomeric repeat-bindin 21.6 1.7E+02 0.0058 21.8 4.9 19 50-68 126-144 (211)
376 1bd8_A P19INK4D CDK4/6 inhibit 21.4 1.3E+02 0.0043 20.5 4.4 16 86-101 9-24 (156)
377 3jxi_A Vanilloid receptor-rela 21.3 1.2E+02 0.004 23.0 4.5 161 115-277 10-211 (260)
378 2keb_A DNA polymerase subunit 21.2 1.7E+02 0.006 18.8 6.7 60 125-184 27-88 (101)
379 1n11_A Ankyrin; clathrin, BAND 21.0 1.8E+02 0.006 24.3 5.9 82 13-102 18-103 (437)
380 1zl8_A LIN-7; heterodimer, alp 20.3 1.2E+02 0.0042 16.7 4.4 20 21-40 8-27 (53)
381 4fn6_A Thiaminase-2, thiaminas 20.3 2.8E+02 0.0096 20.9 8.5 63 2-66 106-180 (229)
382 2yru_A Steroid receptor RNA ac 20.3 2E+02 0.0069 19.2 5.4 41 129-169 48-88 (118)
383 2cos_A Serine/threonine protei 20.1 1.3E+02 0.0044 16.9 4.1 40 61-105 10-51 (54)
384 3l6a_A Eukaryotic translation 20.0 3.7E+02 0.013 22.1 7.7 80 10-93 16-100 (364)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-32 Score=241.99 Aligned_cols=185 Identities=12% Similarity=0.141 Sum_probs=175.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC---------chHHHHHHHHHHHhCCCCch
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA---------LDLGREIHLYVMQIGFDIDV 76 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 76 (331)
...++.+|.+|++.|++++|+++|++|.+.|++||..+|++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 345888999999999999999999999999999999999999999987665 57899999999999999999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 77 YIGSALVDMYAKCGSLDRSLLVFFKLR----EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
.+|+++|++|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999996 4799999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA 191 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (331)
++.|+.++|.++|++|. +.++.|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999 779999999999999998763
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2e-31 Score=234.26 Aligned_cols=199 Identities=12% Similarity=0.092 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC---------H
Q 043124 23 REALDAFNEMKNSGISPDQV-TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS---------L 92 (331)
Q Consensus 23 ~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 92 (331)
..+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34566677888777765554 5889999999999999999999999999999999999999999987765 7
Q ss_pred HHHHHHHhhcC----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhh
Q 043124 93 DRSLLVFFKLR----EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSM 168 (331)
Q Consensus 93 ~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 168 (331)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999996 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHhh
Q 043124 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS---KFQPNAVIWGALLGGCKL 222 (331)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~ 222 (331)
. ..|+.||..+|++||.+|++.|++++|.+++++| +..|+..||+.++..|..
T Consensus 167 ~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 V-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp H-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred H-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9 7899999999999999999999999999999876 589999999999998765
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9.9e-29 Score=224.02 Aligned_cols=281 Identities=10% Similarity=0.017 Sum_probs=254.7
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
+|..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|++++|..+++++.+.. +.+..+++.++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 789999999999999999999999999999875 4478899999999999999999999999999774 56788999999
Q ss_pred HHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998753 467899999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHhhcCCHHHHHH
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-------KFQPN--AVIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~ 231 (331)
|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 460 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 460 ANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998432 446889999999999999999999999875 55787 7899999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHH
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSL 311 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 311 (331)
.++++.+..|++...|..++.+|.+.|++++|.+.++++.+ .+|+++.++..+
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---------------------------~~p~~~~~~~~l 590 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA---------------------------ISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh---------------------------cCCCChHHHHHH
Confidence 99999999999999999999999999999999999999985 347778888888
Q ss_pred HHHHH
Q 043124 312 SKLDE 316 (331)
Q Consensus 312 ~~l~~ 316 (331)
+++|.
T Consensus 591 ~~~~~ 595 (597)
T 2xpi_A 591 KRALE 595 (597)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 77764
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.6e-27 Score=213.76 Aligned_cols=265 Identities=9% Similarity=-0.065 Sum_probs=199.6
Q ss_pred CCCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 043124 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81 (331)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (331)
|.+++..|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|...|++++|..+++.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 4578899999999999999999999999999864 678899999999999999999999999987653 678899999
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCC-------------------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLREK-------------------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 142 (331)
++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.+.|++|.+.+. .+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhh
Confidence 999999999999999999965543 378999999999999999999999999987642 122
Q ss_pred HHHHHH--------------------------------------HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHH
Q 043124 143 VTFISV--------------------------------------LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM 184 (331)
Q Consensus 143 ~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 184 (331)
..+..+ +..|.+.|++++|..+|+++.+. +++..+++.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l 311 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHH
Confidence 222211 33344556666666666665521 3555566666
Q ss_pred HHHHHHcCCHHHHHHHHHhCC------------------------------------CCCcHHHHHHHHHHHhhcCCHHH
Q 043124 185 VDLLSKAGLLEDALELIRSSK------------------------------------FQPNAVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~------------------------------------~~p~~~~~~~l~~~~~~~~~~~~ 228 (331)
+.+|.+.|++++|.++|+++. ...+..++..++..|.+.|++++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 666666666666665555431 12246667777777777777777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
|.++|+++.+..|.+...|..++.+|.+.|++++|.++|+++.+.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777777777777777777777777776543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.5e-24 Score=184.88 Aligned_cols=309 Identities=14% Similarity=0.159 Sum_probs=226.8
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
+.+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4577889999999999999999999999998863 3356678899999999999999999999998875 3456677788
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
...+...|++++|.+.|+++.+ | +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 8888889999999999988763 2 45788888888999999999999998888764 445667777777778888888
Q ss_pred HHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
+|...|++..... +.+..++..+..++...|++++|++.++++ ...| +..++..+...+...|++++|...+++++
T Consensus 221 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887776321 234667777777788888888888877763 2344 35667777777777888888888888887
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeC------CEE----EEeecCCCCCCCchHH
Q 043124 238 ILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME------RKV----YQFAASDKSHPASDEI 307 (331)
Q Consensus 238 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~p~~~~~ 307 (331)
+..|++...+..++.++.+.|++++|...++++.+. .|+ ....+...+ ... ..+......+|+++.+
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 777777777777788888888888888888777653 222 111000000 000 0000001567888899
Q ss_pred HHHHHHHHHHHH
Q 043124 308 YSSLSKLDEQLK 319 (331)
Q Consensus 308 ~~~l~~l~~~~~ 319 (331)
+..++.++..++
T Consensus 376 ~~~lg~~~~~~~ 387 (388)
T 1w3b_A 376 YSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHhHHHHHHHcc
Confidence 999988877654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=7e-24 Score=182.13 Aligned_cols=309 Identities=12% Similarity=0.049 Sum_probs=253.4
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
.+...+..+...+...|++++|...++...+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 108 (388)
T 1w3b_A 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLA 108 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHH
Confidence 456677788889999999999999999998864 5678899999999999999999999999999874 44667899999
Q ss_pred HHHHhhCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEE 160 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 160 (331)
.++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998764 3 45678889999999999999999999999874 4567889999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 161 GRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
|...|+++.+.. +.+...+..+...+...|++++|...+++. ...| +..++..+...+...|++++|...++++++
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 188 AIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998432 335778889999999999999999999864 3455 478888999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeC------CEE----EEeecCCCCCCCchHHH
Q 043124 239 LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME------RKV----YQFAASDKSHPASDEIY 308 (331)
Q Consensus 239 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~p~~~~~~ 308 (331)
..|+++..|..++.++.+.|++++|...++++.+.. |+ ....+...+ ... ..+.......|++..++
T Consensus 266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999999999999999999999998763 22 111110000 000 00000116679999999
Q ss_pred HHHHHHHHHHHh
Q 043124 309 SSLSKLDEQLKL 320 (331)
Q Consensus 309 ~~l~~l~~~~~~ 320 (331)
..++.++...++
T Consensus 343 ~~l~~~~~~~g~ 354 (388)
T 1w3b_A 343 SNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHcCC
Confidence 998888765543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.9e-23 Score=180.19 Aligned_cols=311 Identities=12% Similarity=0.049 Sum_probs=229.4
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3466778889999999999999999999998763 4577888889999999999999999999998885 4467788889
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCC---h---hhHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLREKN---L---FCWNSI------------IEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 144 (331)
+.+|.+.|++++|.+.|+++.+.+ . .++..+ ...+...|++++|...|+++.+.. +.+...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999998886532 2 455544 444888889999999998888764 456777
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHH------
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGAL------ 216 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l------ 216 (331)
+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..++++ ...|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 8888888888888888888888887432 445778888888888888888888888764 23443 3334333
Q ss_pred ------HHHHhhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEE
Q 043124 217 ------LGGCKLHRNLEIAHIAVNELMILEPNNSG----YCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIE 286 (331)
Q Consensus 217 ------~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 286 (331)
...+...|++++|...++++++..|+++. .+..++.++.+.|++++|...++++.+.. |+ ....+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~-~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PD-NVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-CHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHH
Confidence 66678888888888888888888887643 56777888888888888888888877543 22 1111110
Q ss_pred eCCEE----------EEeecCCCCCCCchHHHHHHHHHHHHHHhc
Q 043124 287 MERKV----------YQFAASDKSHPASDEIYSSLSKLDEQLKLA 321 (331)
Q Consensus 287 ~~~~~----------~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 321 (331)
.+... ..+.......|+++.++..++.+....++.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 00000 000000167888999998888887776654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.2e-22 Score=177.72 Aligned_cols=266 Identities=13% Similarity=0.028 Sum_probs=228.9
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCch---hHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV---YIG 79 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 79 (331)
+.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+..++...|++++|...|+++.+.. +.+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 4578899999999999999999999999999875 4467889999999999999999999999998864 3344 555
Q ss_pred HHH------------HHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Q 043124 80 SAL------------VDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144 (331)
Q Consensus 80 ~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 144 (331)
..+ ...+.+.|++++|...|+++.+ .+..++..++.+|...|++++|.+.|+++.+.+ +.+..+
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 555 4458999999999999998763 467889999999999999999999999998874 567889
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHH------------HHHHHHcCCHHHHHHHHHhC-CCCCc--
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCM------------VDLLSKAGLLEDALELIRSS-KFQPN-- 209 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~-~~~p~-- 209 (331)
+..+...+...|++++|...|+++.... +.+...+..+ ...+.+.|++++|...|+++ ...|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999999998432 2234445444 78899999999999999874 24454
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 210 ---AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 210 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...+..+..++.+.|++++|...++++++..|++...+..++.+|...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4477888888999999999999999999999999999999999999999999999999999874
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.1e-22 Score=165.40 Aligned_cols=280 Identities=8% Similarity=-0.036 Sum_probs=241.8
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
.+...+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888999999999999999999998874 4466677788889999999999999999999875 45788899999
Q ss_pred HHHHhhC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 84 DMYAKCG-SLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 84 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
..+...| ++++|.+.|++..+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999999875 445566777889999999999
Q ss_pred HHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-----------CCCcHHHHHHHHHHHhhcCCHHH
Q 043124 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-----------FQPNAVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~p~~~~~~~l~~~~~~~~~~~~ 228 (331)
+|...+++..+.. +.+...+..+...+...|++++|...+++.- ...+...+..+..++...|++++
T Consensus 177 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998332 4457889999999999999999999987531 12345788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHH
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIY 308 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 308 (331)
|...++++++..|++...+..++.+|.+.|++++|...+++.. ...|+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------------------------~~~p~~~~~~ 307 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL---------------------------GLRRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT---------------------------TTCSCCHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------------ccCCCchHHH
Confidence 9999999999999999999999999999999999999999875 3457788888
Q ss_pred HHHHHHH
Q 043124 309 SSLSKLD 315 (331)
Q Consensus 309 ~~l~~l~ 315 (331)
..++..+
T Consensus 308 ~~l~~~~ 314 (330)
T 3hym_B 308 TMLGHCI 314 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=2e-20 Score=158.22 Aligned_cols=308 Identities=12% Similarity=0.050 Sum_probs=201.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667778888888888888888888887764 3466777788888888888888888888887764 335677778888
Q ss_pred HHHhhCCHHHHHHHHhhcCCCC------hhhHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLREKN------LFCWNSI------------IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 146 (331)
++...|++++|...|++..+.+ ...+..+ ...+...|++++|.+.++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 8888888888888888775432 2233333 467777788888888888877664 44566777
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHH----------
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWG---------- 214 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~---------- 214 (331)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...+++. ...|+ ...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 7777777788888888888777732 1345667777777777777777777777653 22232 22222
Q ss_pred --HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch----HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeC
Q 043124 215 --ALLGGCKLHRNLEIAHIAVNELMILEPNNSGY----CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEME 288 (331)
Q Consensus 215 --~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 288 (331)
.+...+...|++++|...++++.+..|++... +..++.++...|++++|...+++..+.. |+ ....+...+
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PD-NVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc-cHHHHHHHH
Confidence 12344666777777777777777766665432 3446666777777777777777766542 22 110000000
Q ss_pred CEE----------EEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 289 RKV----------YQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 289 ~~~----------~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
... ..+......+|+++.+...+..++..+++
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 000 00000016678888888888888877765
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7e-21 Score=162.01 Aligned_cols=262 Identities=10% Similarity=-0.050 Sum_probs=221.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 46678899999999999999999999999875 4577889999999999999999999999999985 457889999999
Q ss_pred HHHhhCCHHHHHHHHhhcCCC---ChhhHHH---------------HHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLREK---NLFCWNS---------------IIEGLAVHGFAHEALAMFDRMIYENVEP-NGVTF 145 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~ 145 (331)
+|...|++++|.+.|+++.+. +...+.. .+..+...|++++|...|+++.+..... +..++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 999999999999999987642 2222221 1333348899999999999999874221 57888
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhc
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLH 223 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 223 (331)
..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 899999999999999999999988432 445788999999999999999999999874 3344 578889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 224 RNLEIAHIAVNELMILEPNN-----------SGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
|++++|...++++++..|++ ...|..++.+|...|++++|..++++.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999988776 688899999999999999999888743
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.8e-21 Score=162.51 Aligned_cols=261 Identities=8% Similarity=-0.072 Sum_probs=217.6
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 456678999999999999999999999999875 4578899999999999999999999999999985 45688999999
Q ss_pred HHHHhhCCHHHHHHHHhhcCCCC-------------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHHHHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLREKN-------------LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEP--NGVTFISV 148 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l 148 (331)
.+|...|++++|.+.|+++.+.+ ...+..+...+...|++++|.+.|+++.+.+ +. +..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 99999999999999999886422 1233445889999999999999999999875 33 68889999
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCH
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNL 226 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 226 (331)
...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..+++. ...| +..++..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998442 446789999999999999999999999874 3445 478899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 043124 227 EIAHIAVNELMILEPN------------NSGYCTLLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 227 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 269 (331)
++|...++++++..|+ +...+..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999997765 367788999999999999988887765
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.1e-20 Score=157.97 Aligned_cols=262 Identities=8% Similarity=-0.053 Sum_probs=221.9
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 55667888999999999999999999998874 4477888899999999999999999999999985 457888999999
Q ss_pred HHHhhCCHHHHHHHHhhcCCC---ChhhHHHH--------------HH-HHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLREK---NLFCWNSI--------------IE-GLAVHGFAHEALAMFDRMIYENVEPNGVTFI 146 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 146 (331)
++...|++++|.+.|+++.+. +...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 999999999999999887643 23334333 33 4778899999999999999875 45788889
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcC
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHR 224 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 224 (331)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998432 445788999999999999999999999874 2334 5788889999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 225 NLEIAHIAVNELMILEPN------------NSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
++++|.+.+++++...|. +...+..+..++.+.|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999998888 67888999999999999999999987543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=5.4e-20 Score=156.50 Aligned_cols=289 Identities=12% Similarity=0.054 Sum_probs=222.1
Q ss_pred HHHhCCChhHHHH-HHHHHHHCCCC-C--CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 043124 15 CYSQNKQFREALD-AFNEMKNSGIS-P--DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG 90 (331)
Q Consensus 15 ~~~~~~~~~~a~~-~~~~m~~~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 90 (331)
++...|++++|.+ .|++....... | +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888888 88766543211 1 34668889999999999999999999999875 457888999999999999
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH---------------HHHHH
Q 043124 91 SLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS---------------VLSAC 152 (331)
Q Consensus 91 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------ll~~~ 152 (331)
++++|.+.|+++.+ .+..++..++..+...|++++|.+.++++.+... .+...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999997753 4678999999999999999999999999998742 22222211 23334
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
...|++++|...|+++.+...-.++..++..+...|...|++++|+..+++. ...| +...+..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4899999999999999854322225788999999999999999999999874 2344 5788999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHH
Q 043124 231 IAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSS 310 (331)
Q Consensus 231 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 310 (331)
..++++++..|++...+..++.+|.+.|++++|...+++..+...... + .....+|....++..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~--------------~~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR--G--------------PRGEGGAMSENIWST 335 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----------------------CCCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--C--------------ccccccchhhHHHHH
Confidence 999999999999999999999999999999999999999986532211 0 001335677889999
Q ss_pred HHHHHHHHHhc
Q 043124 311 LSKLDEQLKLA 321 (331)
Q Consensus 311 l~~l~~~~~~~ 321 (331)
++.++..+++.
T Consensus 336 l~~~~~~~g~~ 346 (368)
T 1fch_A 336 LRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHTCG
T ss_pred HHHHHHHhCCh
Confidence 99999887654
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.2e-20 Score=163.52 Aligned_cols=263 Identities=10% Similarity=-0.008 Sum_probs=202.2
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|......+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|+..++++++.+ +.+..++..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567777888889999999999999998864 688888889999999999999999999988875 446778888899
Q ss_pred HHHhhCCHHHHHHHHhhcCCCC----------------------------------------------------------
Q 043124 85 MYAKCGSLDRSLLVFFKLREKN---------------------------------------------------------- 106 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~~---------------------------------------------------------- 106 (331)
+|.+.|++++|...|+++.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999998887663211
Q ss_pred ------------------------hhhHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCC--------CCcHHHHH
Q 043124 107 ------------------------LFCWNSIIEGLAV---HGFAHEALAMFDRMIY-----ENV--------EPNGVTFI 146 (331)
Q Consensus 107 ------------------------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~p~~~~~~ 146 (331)
...+......+.. .|++++|...|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2223333333333 7888888888888877 311 22345667
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcC
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHR 224 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 224 (331)
.+...+...|++++|...|+.+.+. .|+...+..+...+...|++++|...+++. ...| +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 7778888888888888888888733 233777788888888888888888888763 3333 4667777788888888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 225 NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
++++|...++++++..|.+...+..++.+|...|++++|...++++.+.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888887753
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-19 Score=160.46 Aligned_cols=267 Identities=10% Similarity=-0.049 Sum_probs=225.5
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC--------
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI-------- 74 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 74 (331)
.||..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|...|+++.+.+...
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3788999999999999999999999999999875 4467889999999999999999999999988765211
Q ss_pred ----------------------------------------------------------------------chhHHHHHHH
Q 043124 75 ----------------------------------------------------------------------DVYIGSALVD 84 (331)
Q Consensus 75 ----------------------------------------------------------------------~~~~~~~l~~ 84 (331)
+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 1222333333
Q ss_pred HHHh---hCCHHHHHHHHhhcCC----------------C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Q 043124 85 MYAK---CGSLDRSLLVFFKLRE----------------K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT 144 (331)
Q Consensus 85 ~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 144 (331)
.+.. .|++++|...|+++.+ + +..++..++..+...|++++|...|+++.+.+ |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 3443 7999999999987655 1 34578899999999999999999999999875 33888
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhh
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKL 222 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 222 (331)
+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 8889999999999999999999998332 445778899999999999999999999874 2344 46788888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.|++++|...++++.+..|++...+..++.+|.+.|++++|...++++.+..
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999987653
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.3e-19 Score=154.08 Aligned_cols=263 Identities=12% Similarity=0.032 Sum_probs=207.6
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEG 116 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 116 (331)
+...+..+...+.+.|++++|+..|+++++.. +.+..++..+..+|...|++++|.+.|++..+ .+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558889999999999999999999999985 55788999999999999999999999998764 357799999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCc-----------HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHH
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPN-----------GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 185 (331)
|...|++++|...|+++.+.+ |+ ...+..+...+...|++++|...|+++.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998863 32 22233457788999999999999999995432222688999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 043124 186 DLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 263 (331)
..|...|++++|++.+++. ...| +..++..+..++...|++++|...++++++..|++...+..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999874 2334 5888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 264 TKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 264 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
...+++..+...... + .. .......+..++..++.++..+++
T Consensus 301 ~~~~~~al~~~~~~~--~-~~------------~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 301 VSNFLTALSLQRKSR--N-QQ------------QVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccC--C-Cc------------ccchhhhHHHHHHHHHHHHHHcCc
Confidence 999999986542211 0 00 001112245778888888877664
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=9.8e-19 Score=146.22 Aligned_cols=255 Identities=13% Similarity=0.019 Sum_probs=217.0
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++++.+.. +.+..++..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 131 (330)
T 3hym_B 54 FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAY 131 (330)
T ss_dssp TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHH
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 455667778899999999999999999999874 446788899999999999 9999999999998875 4467889999
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 83 VDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
..++...|++++|.+.|++..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHH
Confidence 9999999999999999998764 345778889999999999999999999999874 556788899999999999999
Q ss_pred HHHHHHHhhhhcCC-------CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 043124 160 EGRRRFLSMTCGYS-------ITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 160 ~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
+|...+++..+... .+.....+..+..++...|++++|...+++. ...| +...+..+..++...|++++|.
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence 99999999874221 1334678899999999999999999999874 2333 5678888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHH-HhcCCch
Q 043124 231 IAVNELMILEPNNSGYCTLLLNMY-AEVSRWA 261 (331)
Q Consensus 231 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 261 (331)
+.++++++..|++...+..+..++ ...|+.+
T Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999888 4566544
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3e-19 Score=146.88 Aligned_cols=245 Identities=10% Similarity=0.028 Sum_probs=189.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQ--VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG 90 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 90 (331)
|+.....|++..|+..+++.... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 56677789999999888776543 3333 3556677888899999988876644 2 3567778888888899999
Q ss_pred CHHHHHHHHhhcC----CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 91 SLDRSLLVFFKLR----EK-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 91 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998764 23 456777888889999999999999887 467778888888999999999999999
Q ss_pred HhhhhcCCCCCcHhH---HHHHHHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 166 LSMTCGYSITPEVEH---YGCMVDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
+++.+. .|+... ...++..+...|++++|..+|+++- ...+...++.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 998843 344221 1223344445588999999988752 34467888888888999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchH-HHHHHHHHHh
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAE-VTKIRVAMKE 272 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 272 (331)
|+++.++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876 5688888774
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=3.2e-18 Score=152.92 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=217.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.++++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888889999999999999888864 4477888888888888999999999999888875 4467788888888
Q ss_pred HHhhCCHHHHHHHHhhcC--------------------------------------------------------------
Q 043124 86 YAKCGSLDRSLLVFFKLR-------------------------------------------------------------- 103 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~-------------------------------------------------------------- 103 (331)
+...|++++|...|+.+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 888888888887664331
Q ss_pred -----------------------------------------------C--CC--------hhhHHHHHHHHHhCCCHHHH
Q 043124 104 -----------------------------------------------E--KN--------LFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 104 -----------------------------------------------~--~~--------~~~~~~li~~~~~~~~~~~a 126 (331)
+ |+ ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1 11 12456666778889999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 043124 127 LAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-K 205 (331)
Q Consensus 127 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~ 205 (331)
...|+++.+. .|+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++. .
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999986 4557888889999999999999999999988433 345778999999999999999999999874 2
Q ss_pred CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 206 FQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 206 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
..| +...+..+...+...|++++|...++++++..|++...+..++.++...|++++|...++++.+..
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 334 467788888999999999999999999999999999999999999999999999999999987654
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=2.6e-18 Score=153.50 Aligned_cols=267 Identities=10% Similarity=0.002 Sum_probs=216.4
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh------------
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI------------ 70 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------ 70 (331)
+.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+.+...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 3577889999999999999999999999998875 446788889999999999999998876422000
Q ss_pred --------------------------------------------------------------------------------
Q 043124 71 -------------------------------------------------------------------------------- 70 (331)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (331)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ---------------CCCCc--------hhHHHHHHHHHHhhCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCHHH
Q 043124 71 ---------------GFDID--------VYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNLFCWNSIIEGLAVHGFAHE 125 (331)
Q Consensus 71 ---------------~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~ 125 (331)
...|+ ..++..+...+...|++++|...|++..+ |+..+|..+...+...|++++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHH
Confidence 01122 22455666788889999999999998763 567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 043124 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS- 204 (331)
Q Consensus 126 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 204 (331)
|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999875 5568889999999999999999999999998432 334678888999999999999999999874
Q ss_pred CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch------HHHHHHHHHhc----------CCchHHHHHH
Q 043124 205 KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY------CTLLLNMYAEV----------SRWAEVTKIR 267 (331)
Q Consensus 205 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~----------g~~~~a~~~~ 267 (331)
...| +...+..+...+...|++++|...++++++..|++... +..+..++.+. |++++|...+
T Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 2334 46688888899999999999999999999976654433 33456778888 9999999999
Q ss_pred HHHHhc
Q 043124 268 VAMKEL 273 (331)
Q Consensus 268 ~~m~~~ 273 (331)
++..+.
T Consensus 452 ~~a~~~ 457 (537)
T 3fp2_A 452 TKACEL 457 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998854
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=8.1e-18 Score=138.35 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=199.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-chhHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI-DVYIGSALVDMY 86 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 86 (331)
..-.+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++.+.+..| +...+..+..++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 445678999999999999987755 2 35677888899999999999999999999999876434 566777888999
Q ss_pred HhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH---HHHHHHHhccCcHHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF---ISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~ 163 (331)
...|++++|++.+++ ..+..++..++..+.+.|++++|.+.|+++.+.+ |+.... ..++..+...|++++|..
T Consensus 112 ~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999999999999999 5678899999999999999999999999999874 443221 223344556699999999
Q ss_pred HHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHH-HHHHHHHHHhcC
Q 043124 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEI-AHIAVNELMILE 240 (331)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 240 (331)
+|+++.+.. +.+...++.+..++.+.|++++|...+++. ...| +..++..++..+...|+.++ +.++++++++.+
T Consensus 188 ~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 188 IFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999543 567889999999999999999999999973 4455 57788899999989999865 679999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHH
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
|+++.+. ....+.+.++++..-|
T Consensus 266 P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 266 RSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCChHHH----HHHHHHHHHHHHHHHc
Confidence 9976553 3455666666655433
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=8.5e-18 Score=140.30 Aligned_cols=262 Identities=12% Similarity=0.026 Sum_probs=208.9
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEG 116 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 116 (331)
+...+..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|.+.|+++.+ .+..++..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44566778888999999999999999999885 45778899999999999999999999998764 366789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH--------------HH-HHhccCcHHHHHHHHHhhhhcCCCCCcHhHH
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISV--------------LS-ACTHAGLVEEGRRRFLSMTCGYSITPEVEHY 181 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (331)
+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHH
Confidence 999999999999999998864 2222333222 22 3788999999999999998442 4467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 043124 182 GCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259 (331)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 259 (331)
..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++..|++...+..++.+|...|+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999874 2334 578889999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 260 WAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 260 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
+++|...+++..+...... .. ............+..++.++..+++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~---~~------------~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGT---TP------------TGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSC---C-----------------CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccc---cc------------cccchhhcCHHHHHHHHHHHHhcCC
Confidence 9999999999986543221 00 0000112256788888888876654
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-19 Score=153.37 Aligned_cols=233 Identities=12% Similarity=0.069 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++...+. .+++.+.+.++.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~ 103 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH
Confidence 35899999999999999999999965 357889999999999999999999988877764 4567889999999
Q ss_pred HHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+
T Consensus 104 Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 104 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -----CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence 999999999988875 477789999999999999999999999987 36889999999999999999999
Q ss_pred HhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc
Q 043124 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG 245 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 245 (331)
.++. ++.+|..++.+|+..|+++.|......+...|+. ...++..|.+.|++++|..+++..+..+|....
T Consensus 172 ~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 172 RKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp HHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred HHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 9883 6789999999999999999997777666656654 446888899999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHH
Q 043124 246 YCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 246 ~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
.|..|..+|++- +.++..+.++
T Consensus 243 ~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 243 MFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHH
Confidence 999998888876 3344444443
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=5.3e-17 Score=137.13 Aligned_cols=268 Identities=13% Similarity=0.014 Sum_probs=224.8
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCC--CchhHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD--IDVYIGS 80 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 80 (331)
+.+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.... .+...+.
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 3467889999999999999999999999999874 346788999999999999999999999999886420 3455555
Q ss_pred HH------------HHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 043124 81 AL------------VDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145 (331)
Q Consensus 81 ~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 145 (331)
.+ ...+...|++++|.+.|+++.+ .+..++..+...+...|++++|...++++.+.. +.+..++
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 191 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 55 5889999999999999998763 467789999999999999999999999999874 5678889
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCc-H-
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG------------CMVDLLSKAGLLEDALELIRSS-KFQPN-A- 210 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~- 210 (331)
..+...+...|++++|...|+...+.. +.+...+. .+...+.+.|++++|...+++. ...|+ .
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 999999999999999999999998443 22333332 2366799999999999999874 23344 2
Q ss_pred ---HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 211 ---VIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 211 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
..+..+..++...|++++|...++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2345577789999999999999999999999999999999999999999999999999998754
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.3e-18 Score=135.49 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCC--Cc----hhHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFD--ID----VYIG 79 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 79 (331)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666666667777777777776666654 55666666666666667777777666666554211 01 3445
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 159 (331)
..+..++...|++++|...|++..+.+.. ...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 55555555555555555555544321111 122333444555555555544432 222334444444444555555
Q ss_pred HHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 043124 160 EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELM 237 (331)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 237 (331)
+|...|++..+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++++
T Consensus 157 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555544221 223344444444444444444444444432 1112 23444444444444444444444444444
Q ss_pred hcC
Q 043124 238 ILE 240 (331)
Q Consensus 238 ~~~ 240 (331)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 433
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=8.2e-20 Score=166.36 Aligned_cols=151 Identities=16% Similarity=0.221 Sum_probs=101.0
Q ss_pred CCCHhhHHHHHHHHHccCCchHHHHHHHHHH---HhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC----CCChhhH
Q 043124 38 SPDQVTMATVLSACAHLGALDLGREIHLYVM---QIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR----EKNLFCW 110 (331)
Q Consensus 38 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 110 (331)
..-..||++||++|++.|++++|.++|++|. +.|+.||..+||+||++|++.|++++|.++|++|. .||+.||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3344567777777777777777777776654 34566777777777777777777777777777765 3567777
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCC----CcHhHHHHHH
Q 043124 111 NSIIEGLAVHGF-AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT----PEVEHYGCMV 185 (331)
Q Consensus 111 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~ 185 (331)
|++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++...+..+ |...+...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 777777777776 467889999999999999999999888665554 3444445554222222 1244555566
Q ss_pred HHHHHcC
Q 043124 186 DLLSKAG 192 (331)
Q Consensus 186 ~~~~~~~ 192 (331)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666555
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-17 Score=131.71 Aligned_cols=220 Identities=10% Similarity=-0.025 Sum_probs=192.5
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---C-------hhhH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---N-------LFCW 110 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-------~~~~ 110 (331)
...+..+...+...|++++|...++++.+.. .+..++..+..++...|++++|.+.|++..+. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999987 78899999999999999999999999987642 1 5789
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH
Q 043124 111 NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK 190 (331)
Q Consensus 111 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (331)
..+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHH
Confidence 99999999999999999999999986 3553 34666789999999999998321 3346788889999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 043124 191 AGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 191 ~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
.|++++|...+++. ...| +...+..+..++...|++++|...++++++..|++...+..++.++.+.|++++|...++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999874 2333 578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 043124 269 AMKEL 273 (331)
Q Consensus 269 ~m~~~ 273 (331)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=5.1e-17 Score=127.81 Aligned_cols=196 Identities=10% Similarity=-0.026 Sum_probs=147.0
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 043124 73 DIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVL 149 (331)
Q Consensus 73 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 149 (331)
+++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..|++..+.+ |.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777778888888888888888877654 255677788888888888888888888888764 44567777778
Q ss_pred HHHhcc-----------CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHH
Q 043124 150 SACTHA-----------GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALL 217 (331)
Q Consensus 150 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~ 217 (331)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 99999999999988432 334778888899999999999999999863 1126788888999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
.++...|++++|...++++++..|++...+..+..++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998764
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.9e-19 Score=149.64 Aligned_cols=218 Identities=13% Similarity=0.191 Sum_probs=95.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 97 (331)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567899999999998 2345999999999999999999999964 2577789999999999999999999
Q ss_pred HHhhcCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCC
Q 043124 98 VFFKLRE--KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175 (331)
Q Consensus 98 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (331)
.++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+.
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------ 149 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------ 149 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------
Confidence 7776654 356789999999999999999998884 3777899999999999999999999999873
Q ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 176 PEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
.|..++.++.+.|++++|.+.+++.+ ++.+|..++.+|...|+++.|......+. ..|+. ...++..|.
T Consensus 150 ----n~~~LA~~L~~Lg~yq~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~---l~~lv~~Ye 218 (449)
T 1b89_A 150 ----NFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LEELINYYQ 218 (449)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH---HHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh---HHHHHHHHH
Confidence 68999999999999999999999984 78999999999999999999977665432 55553 456999999
Q ss_pred hcCCchHHHHHHHHHH
Q 043124 256 EVSRWAEVTKIRVAMK 271 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~ 271 (331)
+.|++++|..+++...
T Consensus 219 k~G~~eEai~lLe~aL 234 (449)
T 1b89_A 219 DRGYFEELITMLEAAL 234 (449)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999999976
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=160.82 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLR-------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFIS 147 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 147 (331)
-..+|++||++|++.|++++|.++|.+|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997763 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCc-HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 148 VLSACTHAGL-VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 148 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
+|.++++.|+ .++|.++|++|. ..|+.||..+|++++....+.+-++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHH
Confidence 9999999998 478999999999 779999999999988766665444433
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.3e-16 Score=129.69 Aligned_cols=248 Identities=11% Similarity=-0.038 Sum_probs=188.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID--VYIGSALVD 84 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 84 (331)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+.+..++ ..++..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788899999999999999999874 33566888899999999999999999999988432222 234788999
Q ss_pred HHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
++...|++++|.+.|++..+ .+..+|..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987764 356789999999999999999999999998763 44566677666344455699999
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC---HHHHHHHHHhCC----CCCc------HHHHHHHHHHHhhcCCHHH
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL---LEDALELIRSSK----FQPN------AVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~----~~p~------~~~~~~l~~~~~~~~~~~~ 228 (331)
...|+++.+.. +.+...+..+...+...|+ +++|...+++.- ..|+ ...+..+...+...|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988432 3346677778888888887 777777776521 1233 2567778888899999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 229 AHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 229 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
|.+.++++++.+|++......+.......+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999998888776665554443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=1.8e-16 Score=129.01 Aligned_cols=243 Identities=12% Similarity=-0.067 Sum_probs=194.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 16 YSQNKQFREALDAFNEMKNSGIS---PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
....|++++|+..|+++.+.... .+..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999986321 245678889999999999999999999999985 45788999999999999999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 93 DRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 93 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
++|.+.|++..+ .+..++..++..+...|++++|...|+++.+.. |+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998764 367889999999999999999999999999864 444444445556677899999999998877
Q ss_pred hcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
... +++...+. ++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...+++++...|++
T Consensus 172 ~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 443 34444444 677788889999999999874 33332 5678888889999999999999999999999986
Q ss_pred cchHHHHHHHHHhcCCchHHHHHH
Q 043124 244 SGYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
... ...++...|++++|...+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 544 356778889999888766
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=2.3e-16 Score=134.17 Aligned_cols=248 Identities=9% Similarity=0.007 Sum_probs=206.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-chHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA-LDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
+...|+.+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35678889999999999999999999999875 3467889999999999996 999999999999986 44788999999
Q ss_pred HHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCcHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVE 159 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~ 159 (331)
.++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.+ +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998864 367889999999999999999999999999985 4578888888888888 56657
Q ss_pred HH-----HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCc-HHHHHHHHHHHhhcC-------
Q 043124 160 EG-----RRRFLSMTCGYSITPEVEHYGCMVDLLSKAG--LLEDALELIRSSKFQPN-AVIWGALLGGCKLHR------- 224 (331)
Q Consensus 160 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~p~-~~~~~~l~~~~~~~~------- 224 (331)
+| +..|++..+.. +-+...|..+..++...| ++++|++.++++...|+ ...+..+..++...|
T Consensus 253 eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 58888887332 335778888888888888 68999998887754554 677788888887763
Q ss_pred --CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 043124 225 --NLEIAHIAVNEL-MILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 225 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 257 (331)
..++|.++++++ .+.+|.....|..+...+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999898988887776543
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=4.2e-17 Score=140.30 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=227.1
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCchHHHHHHHHHHHh----CCCC
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPD----QVTMATVLSACAHLGALDLGREIHLYVMQI----GFDI 74 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 74 (331)
.+....+......+...|++++|...|+++.+.+. .+ ..++..+...+...|+++.|...++++.+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45666778888999999999999999999988742 23 356888889999999999999999987654 2122
Q ss_pred -chhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhCCC--------------------HH
Q 043124 75 -DVYIGSALVDMYAKCGSLDRSLLVFFKLREK-----N----LFCWNSIIEGLAVHGF--------------------AH 124 (331)
Q Consensus 75 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~ 124 (331)
...++..+..+|...|++++|...+++..+. + ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 3567888999999999999999999877641 2 3478899999999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc----HhHHHHHHHHHHHcCCHH
Q 043124 125 EALAMFDRMIYE----NVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCMVDLLSKAGLLE 195 (331)
Q Consensus 125 ~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 195 (331)
+|.+.+++..+. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887653 2112 2456778888999999999999999987732111112 347888899999999999
Q ss_pred HHHHHHHhC-------CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCch
Q 043124 196 DALELIRSS-------KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN------SGYCTLLLNMYAEVSRWA 261 (331)
Q Consensus 196 ~a~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 261 (331)
+|...+++. +..+. ..++..+...+...|++++|...++++++..+.. ...+..+..+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999998753 11111 4567788888999999999999999998854332 456788999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhc
Q 043124 262 EVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321 (331)
Q Consensus 262 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 321 (331)
+|...+++..+..-.. ...+....++..++.++..+++.
T Consensus 325 ~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREV---------------------GDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh---------------------cCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999987542111 12234456677777777777654
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.9e-16 Score=124.53 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=144.1
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSAL 82 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 82 (331)
+++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3577788889999999999999999999998874 4477888899999999999999999999999885 4467788889
Q ss_pred HHHHHhh-----------CCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 043124 83 VDMYAKC-----------GSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISV 148 (331)
Q Consensus 83 ~~~~~~~-----------g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 148 (331)
..++... |++++|+..|++..+ | +...|..+..++...|++++|+..|++..+.+ .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 9999888 888888888877653 2 45677778888888888888888888887776 567777777
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
..++...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 778888888888888888877332 334666777777777888888887777654
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=5.5e-16 Score=126.03 Aligned_cols=229 Identities=8% Similarity=-0.094 Sum_probs=186.6
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC--CCh----hhHHHHH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--KNL----FCWNSII 114 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li 114 (331)
...+......+...|++++|+..++++.+.. +.+..++..+..+|...|++++|.+.|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456677788899999999999999999875 34666888999999999999999999998765 232 2489999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCH
Q 043124 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL 194 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (331)
..+...|++++|++.|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 456678889999999999999999999999833 234567777777345555699
Q ss_pred HHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCch
Q 043124 195 EDALELIRSS-KFQPN-AVIWGALLGGCKLHRN---LEIAHIAVNELMILE---PNN-----SGYCTLLLNMYAEVSRWA 261 (331)
Q Consensus 195 ~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 261 (331)
++|.+.+++. ...|+ ...+..+..++...++ +++|...++++++.. |+. ...|..++..|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999874 34454 6777778888888888 888999999998843 442 257788999999999999
Q ss_pred HHHHHHHHHHhc
Q 043124 262 EVTKIRVAMKEL 273 (331)
Q Consensus 262 ~a~~~~~~m~~~ 273 (331)
+|...+++..+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999853
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=5.5e-15 Score=120.33 Aligned_cols=223 Identities=12% Similarity=-0.038 Sum_probs=118.5
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCchhHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAH----LGALDLGREIHLYVMQIGFDIDVYIGS 80 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (331)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666666666677776666666652 234555566666666 666666666666666654 445555
Q ss_pred HHHHHHHh----hCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 043124 81 ALVDMYAK----CGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV----HGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151 (331)
Q Consensus 81 ~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 151 (331)
.+..+|.. .+++++|.+.|++..+. +..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55556655 55555555555544332 34445555555555 555555555555555443 22333334444
Q ss_pred Hhc----cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhh----c
Q 043124 152 CTH----AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKL----H 223 (331)
Q Consensus 152 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~ 223 (331)
+.. .+++++|...|++..+. .+...+..+...+.. .
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~------------------------------------~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL------------------------------------KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHHHTCSSC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHcCCCCC
Confidence 443 44555555555544411 123344444444444 5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhcC
Q 043124 224 RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE----VSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 274 (331)
+++++|...++++.+.+| ...+..+..+|.. .+++++|...+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555433 3334445555555 555555555555555444
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=4.1e-15 Score=121.08 Aligned_cols=186 Identities=9% Similarity=-0.029 Sum_probs=155.8
Q ss_pred chhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCch
Q 043124 5 DIISWTTMITCYSQ----NKQFREALDAFNEMKNSGISPDQVTMATVLSACAH----LGALDLGREIHLYVMQIGFDIDV 76 (331)
Q Consensus 5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 76 (331)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|+..+++..+.+ +.
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 110 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA 110 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc
Confidence 45678889999999 999999999999999875 77888899999998 999999999999999875 67
Q ss_pred hHHHHHHHHHHh----hCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 043124 77 YIGSALVDMYAK----CGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV----HGFAHEALAMFDRMIYENVEPNGVTFIS 147 (331)
Q Consensus 77 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 147 (331)
..+..+...|.. .+++++|.+.|++..+. +..++..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 187 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFN 187 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 788899999999 99999999999987654 56788889999988 999999999999998875 4566777
Q ss_pred HHHHHhc----cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH----cCCHHHHHHHHHh
Q 043124 148 VLSACTH----AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK----AGLLEDALELIRS 203 (331)
Q Consensus 148 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 203 (331)
+...+.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 8888888 89999999999998832 2 24556666666766 6777777777665
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.1e-15 Score=129.97 Aligned_cols=246 Identities=9% Similarity=0.047 Sum_probs=206.1
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC-HHHHHHHHhhcCC---CChhhHHHHHHH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS-LDRSLLVFFKLRE---KNLFCWNSIIEG 116 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~li~~ 116 (331)
...|..+..++...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|++..+ .+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567888888999999999999999999985 4578899999999999997 9999999998874 366799999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH-cCCHH
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK-AGLLE 195 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 195 (331)
+...|++++|+..|+++++.+ +-+...|..+..++...|++++|+..|+++.+.. +-+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999985 5578889999999999999999999999999432 3457889999999999 66657
Q ss_pred HH-----HHHHHh-CCCCC-cHHHHHHHHHHHhhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 043124 196 DA-----LELIRS-SKFQP-NAVIWGALLGGCKLHR--NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS-------- 258 (331)
Q Consensus 196 ~a-----~~~~~~-~~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 258 (331)
+| ++.+++ +...| +...|..+...+...| ++++|.+.++++ +..|++..++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 466665 34556 4778888888888877 689999999998 889999999999999999875
Q ss_pred -CchHHHHHHHHH-HhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHH
Q 043124 259 -RWAEVTKIRVAM-KELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQL 318 (331)
Q Consensus 259 -~~~~a~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 318 (331)
.+++|..+++++ . +.+|.....|..+...+..+
T Consensus 332 ~~~~~A~~~~~~l~~---------------------------~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAK---------------------------EKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHH---------------------------TTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------------HhCchhHHHHHHHHHHHHHH
Confidence 258899999998 5 34577777888777766544
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=5.5e-15 Score=118.69 Aligned_cols=203 Identities=13% Similarity=-0.044 Sum_probs=123.4
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGL 117 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 117 (331)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.+.|+++.+ .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3455666666677777777777777776653 33555666666666677777777666665542 2445666666666
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (331)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666522223 34555556666666666666666666666321 2235556666666666666666
Q ss_pred HHHHHHhC-CCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 197 ALELIRSS-KFQ-PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 197 a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
|...+++. ... .+...+..+...+...|++++|.+.++++.+..|++...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666652 222 234555555556666666666666666666666665544
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=4e-16 Score=124.55 Aligned_cols=209 Identities=13% Similarity=0.075 Sum_probs=123.7
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGL 117 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 117 (331)
...|..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.+.|++..+ .+..++..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3445555666666666666666666666543 33455666666666666666666666665542 2455666667777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776653 3455666667777777777777777777766332 33455666677777777777777
Q ss_pred HHHHHhC-CCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 198 LELIRSS-KFQ-PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 198 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
.+.+++. ... .+..++..+..++...|++++|...++++++..|++...+..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 7777653 222 3456677777777777888888888888877777776665544433
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=2.2e-16 Score=136.30 Aligned_cols=266 Identities=11% Similarity=0.014 Sum_probs=208.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCchHHHHHHHHHHHh----C-CCCchh
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQ----VTMATVLSACAHLGALDLGREIHLYVMQI----G-FDIDVY 77 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 77 (331)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...+...|++++|...++++++. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4455677888999999999999999998742 233 46888889999999999999999988764 1 123456
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHhCCC-----------------HHHHHHHHH
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLREK---------NLFCWNSIIEGLAVHGF-----------------AHEALAMFD 131 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 131 (331)
++..+..+|...|++++|...|++..+. ...++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888999999999999999999876532 23578889999999999 999999998
Q ss_pred HHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc----HhHHHHHHHHHHHcCCHHHHHHHHH
Q 043124 132 RMIYE----NVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCMVDLLSKAGLLEDALELIR 202 (331)
Q Consensus 132 ~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 202 (331)
+..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87653 2112 2356778888999999999999999998732211111 2377888999999999999999987
Q ss_pred hCC-----CC---CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHH
Q 043124 203 SSK-----FQ---PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN------NSGYCTLLLNMYAEVSRWAEVTKIRV 268 (331)
Q Consensus 203 ~~~-----~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 268 (331)
+.- .. ....++..+...+...|++++|...+++++...+. ....+..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 531 11 12467788888899999999999999999885432 23477889999999999999999999
Q ss_pred HHHhc
Q 043124 269 AMKEL 273 (331)
Q Consensus 269 ~m~~~ 273 (331)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=3.9e-16 Score=124.62 Aligned_cols=196 Identities=11% Similarity=0.054 Sum_probs=155.3
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 151 (331)
....+..+...+...|++++|...|++..+ .+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 456777888899999999999999998764 356789999999999999999999999999874 4577888889999
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHhhcCCHHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQ-PNAVIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a 229 (331)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998433 446778888999999999999999999874 233 3577888889999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...++++++..|++...+..++.+|...|++++|...+++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999853
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=6.3e-15 Score=115.97 Aligned_cols=192 Identities=12% Similarity=-0.031 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
++..+...+...|++++|.+.|++..+ .+..++..++..+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 333344444444444444444433321 123344444444444455555555555444432 2234444445555555
Q ss_pred c-CcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 043124 155 A-GLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 155 ~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
. |++++|...++++.+ .+..| +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 5 555555555555542 11112 2344444555555555555555555442 1122 2444555555555555566666
Q ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 231 IAVNELMILEP-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 231 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
..++++++..| .+...+..+...+...|+.+.|..+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55555555555 555555555555555555555555555554
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=4.6e-15 Score=119.13 Aligned_cols=197 Identities=11% Similarity=-0.019 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSAC 152 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 152 (331)
...+..+...+...|++++|.+.|+++.+ .+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999998763 366789999999999999999999999999874 45778888899999
Q ss_pred hccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHH
Q 043124 153 THAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 229 (331)
...|++++|..+++++.. .+..| +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999984 32344 5678888999999999999999999874 2334 578888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 230 HIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
...++++.+..|++...+..+...+...|++++|...++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998653
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=3e-16 Score=131.08 Aligned_cols=267 Identities=12% Similarity=0.075 Sum_probs=207.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCchHHHHHHHHHHHh----CCCC-ch
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPD----QVTMATVLSACAHLGALDLGREIHLYVMQI----GFDI-DV 76 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 76 (331)
...+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++++.+. +..+ ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 44566677889999999999999999988742 23 357788889999999999999999887654 2122 35
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhCCC--------------------HHHHH
Q 043124 77 YIGSALVDMYAKCGSLDRSLLVFFKLRE-----KN----LFCWNSIIEGLAVHGF--------------------AHEAL 127 (331)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~ 127 (331)
.++..+..++...|++++|...+++..+ .+ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999987653 12 3478889999999999 99999
Q ss_pred HHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC----cHhHHHHHHHHHHHcCCHHHHH
Q 043124 128 AMFDRMIYE----NVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP----EVEHYGCMVDLLSKAGLLEDAL 198 (331)
Q Consensus 128 ~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 198 (331)
+.+++..+. +..+ ....+..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887643 2112 245677788889999999999999998773211111 1347888889999999999999
Q ss_pred HHHHhCC-C---CCc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHH
Q 043124 199 ELIRSSK-F---QPN----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN------SGYCTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 199 ~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 264 (331)
..+++.- . .++ ..++..+...+...|++++|...+++++...|.. ...+..+..+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9987531 1 111 4567778888999999999999999998854332 346778999999999999999
Q ss_pred HHHHHHHhc
Q 043124 265 KIRVAMKEL 273 (331)
Q Consensus 265 ~~~~~m~~~ 273 (331)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=6.6e-15 Score=115.85 Aligned_cols=207 Identities=14% Similarity=-0.008 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD----------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC-----------
Confidence 3445555555555555555555555554432 2234444455555555555555555555554442 22
Q ss_pred HHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCcHHHHHH
Q 043124 86 YAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVH-GFAHEALAMFDRMIYENVEP-NGVTFISVLSACTHAGLVEEGRR 163 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 163 (331)
+..++..++..+... |++++|...++++.+.+..| +...+..+...+...|++++|..
T Consensus 75 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 75 --------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 333445555555555 55555555555555421122 24445555556666666666666
Q ss_pred HHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 043124 164 RFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQ--PNAVIWGALLGGCKLHRNLEIAHIAVNELMILE 240 (331)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 240 (331)
.++++.+.. +.+...+..+...+...|++++|...+++. ... .+...+..+...+...|+.+.|..+++.+....
T Consensus 135 ~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 666655221 223555666666666666666666666542 122 234455555555667777777777777776667
Q ss_pred CCCcchH
Q 043124 241 PNNSGYC 247 (331)
Q Consensus 241 p~~~~~~ 247 (331)
|++....
T Consensus 213 p~~~~~~ 219 (225)
T 2vq2_A 213 PYSEELQ 219 (225)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 7665553
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=4.6e-14 Score=124.02 Aligned_cols=269 Identities=13% Similarity=0.046 Sum_probs=191.8
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhC-----
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNS--------GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG----- 71 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 71 (331)
....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987642 112245689999999999999999999999887641
Q ss_pred -CC-CchhHHHHHHHHHHhh--CCHHHHHHHHhhcCC--C-ChhhHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCCc
Q 043124 72 -FD-IDVYIGSALVDMYAKC--GSLDRSLLVFFKLRE--K-NLFCWNSIIEG---LAVHGFAHEALAMFDRMIYENVEPN 141 (331)
Q Consensus 72 -~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~ 141 (331)
.. ....++..+..++... +++++|.+.|++..+ | ++..+..+..+ +...++.++|++.+++..+.+ +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 1245666666666654 469999999998763 3 44555555544 445677888999999888764 445
Q ss_pred HHHHHHHHHHHh----ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHH
Q 043124 142 GVTFISVLSACT----HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGA 215 (331)
Q Consensus 142 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~ 215 (331)
...+..+...+. ..++.++|...+++..... +.+...+..+...|...|++++|+..+++. ...|+ ..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 555555554443 3467788999998887332 445677888899999999999999998864 34454 455555
Q ss_pred HHHHHhh-------------------cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 216 LLGGCKL-------------------HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 216 l~~~~~~-------------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
+..+|.. .+..+.|...++++.+.+|.+...+..++.+|...|++++|...|++..+....
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 5444322 233567777888888888888888888888888888888888888888765443
No 50
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=6.1e-13 Score=117.55 Aligned_cols=255 Identities=12% Similarity=-0.081 Sum_probs=156.6
Q ss_pred chhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCch
Q 043124 5 DIISWTTMITCYSQ----NKQFREALDAFNEMKNSGISPDQVTMATVLSACAH----LGALDLGREIHLYVMQIGFDIDV 76 (331)
Q Consensus 5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 76 (331)
|..++..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45566666666766 677777777777777654 45566667777766 677777777777777654 44
Q ss_pred hHHHHHHHHHHh----hCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 043124 77 YIGSALVDMYAK----CGSLDRSLLVFFKLREK-NLFCWNSIIEGLAV----HGFAHEALAMFDRMIYENVEPNGVTFIS 147 (331)
Q Consensus 77 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 147 (331)
..+..|...|.. .+++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 556666777766 66777777777765543 45566666666665 567777777777766654 4455555
Q ss_pred HHHHHhc----cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043124 148 VLSACTH----AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK----AGLLEDALELIRSSKFQPNAVIWGALLGG 219 (331)
Q Consensus 148 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~p~~~~~~~l~~~ 219 (331)
+...|.. .++.++|..+|++.. ..+ +...+..+...|.. .+++++|...|++.--..+...+..+...
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555 666777777776666 222 34455555555554 56666666666653222344445555555
Q ss_pred Hhh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHhcC
Q 043124 220 CKL----HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV-----SRWAEVTKIRVAMKELG 274 (331)
Q Consensus 220 ~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~ 274 (331)
+.. .++.++|..+++++.+. .++..+..|...|... +++++|...+++..+.|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 554 56666666666666543 2334445555666555 56666666666655543
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=3.1e-15 Score=121.61 Aligned_cols=218 Identities=10% Similarity=-0.083 Sum_probs=176.8
Q ss_pred HccCCchHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHH
Q 043124 52 AHLGALDLGREIHLYVMQIGF---DIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHE 125 (331)
Q Consensus 52 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 125 (331)
...|++++|+..++++.+... +.+..++..+..++...|++++|...|++..+ .+..+|..++..+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456889999999999988632 22567888999999999999999999998763 367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 043124 126 ALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS- 204 (331)
Q Consensus 126 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 204 (331)
|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999874 446788888999999999999999999999843 444444444555667789999999999653
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 205 KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN----NSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 205 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
...|+......++..+...++.++|...++++....|. +...+..++.+|.+.|++++|...+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 22233223334677788889999999999999886653 3677889999999999999999999999854
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=3.6e-14 Score=108.30 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=127.0
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHH
Q 043124 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMV 185 (331)
Q Consensus 106 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 185 (331)
+..+|..+...|...|++++|++.|++..+.+ |-+..++..+...+.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45567778888888888888888888877764 4456777777788888888888888888877332 33456666677
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 043124 186 DLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV 263 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 263 (331)
..+...++++.|...+.+. ...| +...+..+..++...|++++|.+.++++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7778888888888887753 2333 4667777778888888888888888888888888888888888888888999999
Q ss_pred HHHHHHHHhc
Q 043124 264 TKIRVAMKEL 273 (331)
Q Consensus 264 ~~~~~~m~~~ 273 (331)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888888754
No 53
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.4e-12 Score=115.31 Aligned_cols=254 Identities=11% Similarity=-0.066 Sum_probs=166.8
Q ss_pred chhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCch
Q 043124 5 DIISWTTMITCYSQ----NKQFREALDAFNEMKNSGISPDQVTMATVLSACAH----LGALDLGREIHLYVMQIGFDIDV 76 (331)
Q Consensus 5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 76 (331)
+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45566777777777 788888888888887764 55666667777766 678888888888877765 45
Q ss_pred hHHHHHHHHHHh----hCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 043124 77 YIGSALVDMYAK----CGSLDRSLLVFFKLRE-KNLFCWNSIIEGLAV----HGFAHEALAMFDRMIYENVEPNGVTFIS 147 (331)
Q Consensus 77 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 147 (331)
..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|.+.|++..+.| +...+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 566677777776 6778888888876654 356677777777776 677888888887777654 3444555
Q ss_pred HHHHHhc----cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043124 148 VLSACTH----AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK----AGLLEDALELIRSSKFQPNAVIWGALLGG 219 (331)
Q Consensus 148 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~p~~~~~~~l~~~ 219 (331)
+...+.. .++.++|..+|++.. ..+ +...+..+...|.. .+++++|++.|++..-.-+...+..+...
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSA-EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHH-TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555554 667777777777766 222 34455555666666 67777777777654222344555555555
Q ss_pred Hhhc-----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHhc
Q 043124 220 CKLH-----RNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS---RWAEVTKIRVAMKEL 273 (331)
Q Consensus 220 ~~~~-----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 273 (331)
+... +++++|..+++++.+.+ +...+..|...|...| ++++|...+++..+.
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 5555 67777777776666543 2334555666665544 566666666666554
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.6e-13 Score=113.75 Aligned_cols=236 Identities=10% Similarity=0.018 Sum_probs=152.9
Q ss_pred chhhHHHHHHHHHhC----CCh----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------ccCCc-------hHHHH
Q 043124 5 DIISWTTMITCYSQN----KQF----REALDAFNEMKNSGISPDQVTMATVLSACA-------HLGAL-------DLGRE 62 (331)
Q Consensus 5 ~~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~ 62 (331)
+...|...+....+. ++. ++|..+|++..... +.+...|..++..+. ..|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345666676665543 233 57777888887753 446667776666654 34775 77888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043124 63 IHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE--K-NLF-CWNSIIEGLAVHGFAHEALAMFDRMIYENV 138 (331)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 138 (331)
+|+++++.-.+.+...|..++..+.+.|++++|.++|++..+ | +.. +|..++..+.+.|++++|..+|++..+.+
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 888777731233455777777777788888888888877654 2 233 67777777777788888888887777653
Q ss_pred CCcHHHHHHHHHHH-hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC--cHH
Q 043124 139 EPNGVTFISVLSAC-THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK----FQP--NAV 211 (331)
Q Consensus 139 ~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~p--~~~ 211 (331)
+++...|....... ...|+.++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++.- +.| ...
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 33344443332222 12577777777777776332 2346667777777777777777777777531 244 245
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
.|..++......|+.+.|..+++++.+..|++.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 666667777777777777777777777777654
No 55
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.6e-13 Score=120.62 Aligned_cols=265 Identities=9% Similarity=-0.091 Sum_probs=179.0
Q ss_pred hhHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 043124 7 ISWTTMITCYSQ--NKQFREALDAFNEMKNSGISPDQVTMATVLSA---CAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81 (331)
Q Consensus 7 ~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (331)
.+|+.+..++.. .+++++|+..|++..+.. +-++..+..+..+ +...++.++|++.++++++.. +.+..++..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 455555555554 457999999999998864 2345555555544 345688899999999999875 445666766
Q ss_pred HHHHHHh----hCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 82 LVDMYAK----CGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 82 l~~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
+...+.. .|++++|.+.+++... .+..++..+...|...|++++|...+++..+.. |-+..++..+...|..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 6655554 4677889999887643 466789999999999999999999999999874 4456666666655532
Q ss_pred c-------------------CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHH--
Q 043124 155 A-------------------GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVI-- 212 (331)
Q Consensus 155 ~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~-- 212 (331)
. +..+.|...++...+.. +.+...+..+...|...|++++|++.|++. ...|+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 2 34677888888877432 334567888999999999999999999863 33444322
Q ss_pred --HHHHHHH-HhhcCCHHHHHHHHHHHHhc------------------------CCCCcchHHHHHHHHHhcCCchHHHH
Q 043124 213 --WGALLGG-CKLHRNLEIAHIAVNELMIL------------------------EPNNSGYCTLLLNMYAEVSRWAEVTK 265 (331)
Q Consensus 213 --~~~l~~~-~~~~~~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~g~~~~a~~ 265 (331)
+..+... ....|+.++|...+++++++ +|+++.+|..|+.+|...|++++|.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2233222 45778999999988887653 57778899999999999999999999
Q ss_pred HHHHHHhcCCC
Q 043124 266 IRVAMKELGIE 276 (331)
Q Consensus 266 ~~~~m~~~~~~ 276 (331)
.|++..+.|-.
T Consensus 452 ~y~kALe~~~~ 462 (472)
T 4g1t_A 452 DSERGLESGSL 462 (472)
T ss_dssp -----------
T ss_pred HHHHHHhcCCC
Confidence 99999876543
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=1.3e-14 Score=127.50 Aligned_cols=209 Identities=11% Similarity=-0.010 Sum_probs=176.9
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 043124 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL-DRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDR 132 (331)
Q Consensus 57 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 132 (331)
++.+...++..... .+.+...+..+..++...|++ ++|++.|++..+ .+..+|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555556554443 234678888999999999999 999999998764 3567999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcc---------CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc--------CCHH
Q 043124 133 MIYENVEPNGVTFISVLSACTHA---------GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA--------GLLE 195 (331)
Q Consensus 133 m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 195 (331)
..+.. |+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99864 6678888899999999 99999999999998432 34578889999999998 9999
Q ss_pred HHHHHHHhC-CCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 196 DALELIRSS-KFQP----NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 196 ~a~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
+|++.|++. ...| +...+..+..++...|++++|...++++++..|++...+..+..++...|++++|...+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999874 3455 68889999999999999999999999999999999999999999999999999998755443
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.8e-15 Score=122.65 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=120.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh------C
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNS-------GISPDQVTMATVLSACAHLGALDLGREIHLYVMQI------G 71 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 71 (331)
+..+|..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888999999999999999888763 22334566778888888899999999988888765 2
Q ss_pred C-CCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Q 043124 72 F-DIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-----------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE--- 136 (331)
Q Consensus 72 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 136 (331)
- +....++..+..+|...|++++|...|++..+. ...++..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567777888888888888888888766421 2345777777888888888888888877654
Q ss_pred ---CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 137 ---NVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 137 ---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+..| ...++..+...+...|++++|...++++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122 24456667777777888888888777776
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=123.73 Aligned_cols=234 Identities=11% Similarity=0.022 Sum_probs=170.3
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-------
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQI-------GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK------- 105 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 105 (331)
+..++..+...+...|++++|..+++++.+. ..+....++..+..+|...|++++|...|++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998874 23445678888999999999999999999876531
Q ss_pred ----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC--
Q 043124 106 ----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE------NVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGY-- 172 (331)
Q Consensus 106 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 172 (331)
...++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|..+++++.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2457889999999999999999999998865 2223 35667788899999999999999999987421
Q ss_pred ---C-CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCcH-------HHHHHHHHHHhhcCCHHHHHH
Q 043124 173 ---S-ITPEVEHYGCMVDLLSKAGLLEDALELIRSSK----------FQPNA-------VIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 173 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~p~~-------~~~~~l~~~~~~~~~~~~a~~ 231 (331)
+ .+.....+..+...|...|++++|.+.+++.- ..+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 12235678888999999999999999987531 11211 122222233445566666777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 232 AVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 232 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.++......|.....+..++.+|.+.|++++|..++++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777778888888999999999999999999999988753
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=1.6e-12 Score=122.85 Aligned_cols=235 Identities=13% Similarity=0.072 Sum_probs=192.3
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++..+.+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 4567889999999999999999999663 477888899999999999999999998877764 34444556899
Q ss_pred HHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 164 (331)
+|++.+++++...+. ..++...|..+...|...|++++|...|... ..|..+...+.+.|+++.|.+.
T Consensus 1176 aYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 999999988655443 4556777888999999999999999999985 3788899999999999999999
Q ss_pred HHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
+++.. +..+|..+..+|...|++..|..+...+. .+...+..++..|.+.|.+++|+++++..+.++|.+.
T Consensus 1244 arKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1244 ARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 98875 45789988999999999999998877543 4555666889999999999999999999999999999
Q ss_pred chHHHHHHHHHhcC--CchHHHHHHH
Q 043124 245 GYCTLLLNMYAEVS--RWAEVTKIRV 268 (331)
Q Consensus 245 ~~~~~l~~~~~~~g--~~~~a~~~~~ 268 (331)
.+|..|..+|++.. +..++.++|.
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99988888887753 3334444443
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=4.6e-13 Score=102.10 Aligned_cols=162 Identities=10% Similarity=0.019 Sum_probs=112.5
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|..+...|.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45567777777777777777777777777664 3356677777777777777777777777777664 335556666667
Q ss_pred HHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
.+...++++.|.+.+.+..+ .+..++..+...+.+.|++++|++.|++..+.+ |.+..++..+..++.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 77777777777777765542 345567777777777777777777777777653 44566666677777777777777
Q ss_pred HHHHHhhh
Q 043124 162 RRRFLSMT 169 (331)
Q Consensus 162 ~~~~~~~~ 169 (331)
...|++..
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 61
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=7.7e-12 Score=106.41 Aligned_cols=264 Identities=13% Similarity=-0.015 Sum_probs=192.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCCchHHHHHHHHHHHhCC--C-C--chhHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQV----TMATVLSACAHLGALDLGREIHLYVMQIGF--D-I--DVYIGS 80 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~--~~~~~~ 80 (331)
......+...|++++|...+++........+.. ++..+...+...|+++.|...+++..+... . + ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778999999999999988764222222 456677788889999999999998876421 1 1 123466
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CcHHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLRE----------K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE----PNGVTF 145 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~ 145 (331)
.+...+...|++++|...+++..+ + ...++..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 788889999999999999887653 1 1235677888999999999999999998765321 124567
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCc-----HHHHH
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG-----CMVDLLSKAGLLEDALELIRSSK-FQPN-----AVIWG 214 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~-~~p~-----~~~~~ 214 (331)
..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788889999999999999998763211111111121 23344779999999999999753 2221 23456
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 215 ALLGGCKLHRNLEIAHIAVNELMILEPN------NSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 215 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.+...+...|++++|...++++....+. ....+..+..++...|++++|...+++..+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7777899999999999999999874321 1235667788999999999999999988654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=2.1e-13 Score=119.87 Aligned_cols=198 Identities=12% Similarity=0.001 Sum_probs=168.5
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh
Q 043124 92 LDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFA-HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 92 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 167 (331)
++++...+++... .+...+..+...+...|++ ++|++.|++..+.. +.+...+..+...+...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3667899999999999999 99999999999875 45688899999999999999999999999
Q ss_pred hhhcCCCCCcHhHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhc--------CCHHH
Q 043124 168 MTCGYSITPEVEHYGCMVDLLSKA---------GLLEDALELIRSS-KFQP-NAVIWGALLGGCKLH--------RNLEI 228 (331)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~~ 228 (331)
..+ +.|+...+..+...|... |++++|++.+++. ...| +...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 993 357778899999999999 9999999999874 3445 578888898899888 99999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCch
Q 043124 229 AHIAVNELMILEP---NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASD 305 (331)
Q Consensus 229 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 305 (331)
|...++++++..| ++...|..++.+|...|++++|...|++..+. +|+++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---------------------------~p~~~ 292 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---------------------------DPAWP 292 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------CTTCH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------CCCCH
Confidence 9999999999999 89999999999999999999999999998753 46667
Q ss_pred HHHHHHHHHHHHHHh
Q 043124 306 EIYSSLSKLDEQLKL 320 (331)
Q Consensus 306 ~~~~~l~~l~~~~~~ 320 (331)
.++..++.++..+++
T Consensus 293 ~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 293 EPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766554
No 63
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=4.6e-12 Score=113.06 Aligned_cols=147 Identities=8% Similarity=0.024 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc--HhHHHHHHHHHHHcCCHHHHHHHHH
Q 043124 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VEHYGCMVDLLSKAGLLEDALELIR 202 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 202 (331)
+|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+++.+ +.|+ ...|..++..+.+.|++++|.++|+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666665421233455666666666667777777777777662 2333 2366666666667777777777776
Q ss_pred hC-CCCCc-HHHHHHHHHH-HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 203 SS-KFQPN-AVIWGALLGG-CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 203 ~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
+. ...|+ ...+...... +...|+.++|..+|+++++..|+++.++..++..+.+.|+.++|..+|++....+
T Consensus 381 ~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 381 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 53 22232 2222222212 2357888888888888888888888888888888888888888888888887653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=6.1e-13 Score=113.74 Aligned_cols=227 Identities=7% Similarity=-0.011 Sum_probs=126.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCC------CchhHHH
Q 043124 12 MITCYSQNKQFREALDAFNEMKNS----GISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFD------IDVYIGS 80 (331)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 80 (331)
....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...++++.+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344566677777777777777653 1111 2345666777777777777777777776653111 1134566
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCcHHHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREK-----N----LFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NV-EPNGVTFI 146 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 146 (331)
.+..+|...|++++|.+.|++..+. + ..++..+...|...|++++|.+.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666777777777777666655421 1 135666666666667777776666666552 22 22345555
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcC---CCCCcHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCc-HHHHHHHHHH
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGY---SITPEVEHYGCMVDLLSKAGL---LEDALELIRSSKFQPN-AVIWGALLGG 219 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~p~-~~~~~~l~~~ 219 (331)
.+...+...|++++|...+++..+.. +-+.....+..+...+...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66666666666666666666654211 001112223445555555555 5556666655543332 2334444555
Q ss_pred HhhcCCHHHHHHHHHHHHh
Q 043124 220 CKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~ 238 (331)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5566666666666665554
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=3.9e-12 Score=120.24 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=156.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKC 89 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (331)
..+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 335667778888999988888852 12222233332 567788888877643 2467788888888888
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 90 GSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 90 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+. .
T Consensus 1119 G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred CCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 8888888888664 677778888888888888888888888776654 22222234666777777766433332 1
Q ss_pred hcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--------
Q 043124 170 CGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEP-------- 241 (331)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-------- 241 (331)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++++....+
T Consensus 1192 -----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1192 -----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 1260 (1630)
T ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 234445555667777777777777777764 2666677777777777777777666643222
Q ss_pred -----------------CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 242 -----------------NNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 242 -----------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
.++..+..++..|.+.|.+++|+.+++...
T Consensus 1261 ve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred hhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 234456778889999999999999997765
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=2.5e-13 Score=124.31 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=131.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 107 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
..+|+.+...+.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4567788888888888888888888887763 3456777778888888888888888888877332 224677888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 043124 187 LLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 264 (331)
+|...|++++|++.|++. .+.| +...+..+..++...|++++|+..++++++++|++...+..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888763 3455 47788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043124 265 KIRVAMKE 272 (331)
Q Consensus 265 ~~~~~m~~ 272 (331)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=4e-12 Score=105.32 Aligned_cols=213 Identities=9% Similarity=0.001 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------hCCH-------HHHHHHHhhcCC---C-ChhhHHHHHHHHHh
Q 043124 58 DLGREIHLYVMQIGFDIDVYIGSALVDMYAK-------CGSL-------DRSLLVFFKLRE---K-NLFCWNSIIEGLAV 119 (331)
Q Consensus 58 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~ 119 (331)
++|..+|+++++.. +.+..+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998874 5578888888888764 5886 899999997754 3 45689999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCc-HH-HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH-HcCCHHH
Q 043124 120 HGFAHEALAMFDRMIYENVEPN-GV-TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS-KAGLLED 196 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 196 (331)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 443 33 78888999999999999999999998322 334455554433322 3799999
Q ss_pred HHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 197 ALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMIL---EPN-NSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 197 a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
|..+|++. ...| +...|..++..+...|++++|..+|++++.. .|+ ....|..++..+.+.|+.+.|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999874 2334 5788888888999999999999999999995 453 5678888999999999999999999999
Q ss_pred HhcCC
Q 043124 271 KELGI 275 (331)
Q Consensus 271 ~~~~~ 275 (331)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87643
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.6e-13 Score=116.50 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=184.9
Q ss_pred CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---------
Q 043124 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID---VYIGSALVDMYAKCGSLDRSLLVFFKLREK--------- 105 (331)
Q Consensus 38 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------- 105 (331)
.+....+......+...|++++|...++++.+...... ..++..+..++...|++++|...|++..+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677788889999999999999999998853211 357888999999999999999998876421
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CC-CcHHHHHHHHHHHhccCc--------------------HHH
Q 043124 106 NLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN----VE-PNGVTFISVLSACTHAGL--------------------VEE 160 (331)
Q Consensus 106 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~-p~~~~~~~ll~~~~~~~~--------------------~~~ 160 (331)
...++..+...+...|++++|...+++..+.. .+ ....++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 24578889999999999999999999887641 11 114477788888999999 999
Q ss_pred HHHHHHhhhhc---CCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHhhcCCHHH
Q 043124 161 GRRRFLSMTCG---YSITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK----FQPN----AVIWGALLGGCKLHRNLEI 228 (331)
Q Consensus 161 a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~ 228 (331)
|...+++.... .+..+ ....+..+...|...|++++|...+++.- ..++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999886531 11112 24578888899999999999999987531 1122 3467888888999999999
Q ss_pred HHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 229 AHIAVNELMILEPNN------SGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 229 a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
|...+++++...|.. ...+..++..|...|++++|...+++..+.
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999999855443 556788999999999999999999998754
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=4.3e-13 Score=106.03 Aligned_cols=205 Identities=11% Similarity=-0.078 Sum_probs=140.6
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLRE----KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLS 150 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 150 (331)
+...+......+...|++++|.+.|++..+ ++...+..+..++...|++++|+..|++..+.+ +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 456777778888888888888888876653 456666668888888888888888888887764 345667777778
Q ss_pred HHhccCcHHHHHHHHHhhhhcCCCCCcH-------hHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCc---HHHHHHHHHH
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGYSITPEV-------EHYGCMVDLLSKAGLLEDALELIRS-SKFQPN---AVIWGALLGG 219 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~---~~~~~~l~~~ 219 (331)
.+...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.+++ +...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 8888888888888888877432 2223 4466677777788888888888876 345565 3455555555
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCC
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDK 299 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (331)
+.. .+...++++....+.+...|..+. ....+.+++|...+++..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--------------------------- 208 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--------------------------- 208 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh---------------------------
Confidence 543 334556666666655544443332 3445667999999998874
Q ss_pred CCCCchHHHHHHHHHHH
Q 043124 300 SHPASDEIYSSLSKLDE 316 (331)
Q Consensus 300 ~~p~~~~~~~~l~~l~~ 316 (331)
..|+++.+...+.++..
T Consensus 209 l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 209 LSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HCTTCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 35777788877777654
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.4e-13 Score=118.58 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=182.2
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhhCCHHHHHHHHhhcCCC---------Chh
Q 043124 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV----YIGSALVDMYAKCGSLDRSLLVFFKLREK---------NLF 108 (331)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~ 108 (331)
..+..+...+...|++++|+..++++++.... +. .++..+..+|...|++++|...|++..+. ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556677888999999999999999998532 32 57888999999999999999998876531 345
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCCcHHHHHHHHHHHhccCc-----------------HHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYE----N-VEPNGVTFISVLSACTHAGL-----------------VEEGRRRFL 166 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 166 (331)
++..+...|...|++++|...+++..+. + .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999998764 1 12234577788889999999 999999998
Q ss_pred hhhhc---CCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC---Cc----HHHHHHHHHHHhhcCCHHHHHHHHH
Q 043124 167 SMTCG---YSITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK-FQ---PN----AVIWGALLGGCKLHRNLEIAHIAVN 234 (331)
Q Consensus 167 ~~~~~---~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~---p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 234 (331)
+..+. .+-.+ ....+..+...|...|++++|...+++.- .. ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86531 11111 24578888899999999999999988631 11 11 2367788888999999999999999
Q ss_pred HHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 235 ELMILEPNN------SGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 235 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+++...|.. ...+..++.+|...|++++|...+++..+.
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999855532 456788999999999999999999998754
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=3.3e-13 Score=115.40 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=174.5
Q ss_pred HHHHHHccCCchHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhhCCHHHHHHHHhhcCC-----C-----ChhhHH
Q 043124 47 VLSACAHLGALDLGREIHLYVMQI----GFDI-DVYIGSALVDMYAKCGSLDRSLLVFFKLRE-----K-----NLFCWN 111 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~ 111 (331)
....+...|++++|...++++.+. +-++ ...++..+..+|...|++++|...+++..+ + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998874 2112 346788899999999999999998877653 1 135789
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhc---CCC-CCcHhHHH
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYEN----VEP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCG---YSI-TPEVEHYG 182 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 182 (331)
.+...|...|++++|+..|++..+.. -++ ...++..+...|...|++++|...+++..+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 99999999999999999999987541 111 1247778899999999999999999998741 122 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC------CCCc-HHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 183 CMVDLLSKAGLLEDALELIRSSK------FQPN-AVIWGALLGGCKLHRN---LEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~------~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
.+...|.+.|++++|...+++.- -.|. ...+..+...+...|+ +++|..++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999987631 1222 2335666667888888 77888887776 333455667788999
Q ss_pred HHHhcCCchHHHHHHHHHHhc
Q 043124 253 MYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 253 ~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=1.6e-13 Score=114.48 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=180.1
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---------Chhh
Q 043124 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFDID---VYIGSALVDMYAKCGSLDRSLLVFFKLREK---------NLFC 109 (331)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~ 109 (331)
..+......+...|++++|...++++.+...... ..++..+...+...|++++|.+.+++..+. ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455667788899999999999999999753211 367888999999999999999999876531 2457
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCc--------------------HHHHHHH
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENV-EPN----GVTFISVLSACTHAGL--------------------VEEGRRR 164 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~ 164 (331)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999999875411 112 3467778888999999 9999999
Q ss_pred HHhhhhc---CCC-CCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C---CCc----HHHHHHHHHHHhhcCCHHHHHHH
Q 043124 165 FLSMTCG---YSI-TPEVEHYGCMVDLLSKAGLLEDALELIRSSK-F---QPN----AVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 165 ~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
+++.... .+. ......+..+...+...|++++|.+.+++.- . .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9886521 111 1124577888889999999999999987631 1 111 33677888889999999999999
Q ss_pred HHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 233 VNELMILEPNN------SGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 233 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+++++...|.. ...+..++.+|...|++++|...+++..+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99998855433 456778999999999999999999998754
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.2e-12 Score=99.42 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 043124 77 YIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
..+..+...+...|++++|.+.|+++.+. +..++..++..+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44555666666777777777777666542 34556666666666666666666666666542 334555555555566
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
..|++++|...++++.+.. +.+. ..+..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINF--------------------------------NVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCH--------------------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhH--------------------------------HHHHHHHHHHHHcCcHHHHHHHH
Confidence 6666666666666555221 2233 34444444455555555555555
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 234 NELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 234 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+++.+..|.+...+..++.++...|++++|...+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555443
No 74
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=4.5e-11 Score=106.68 Aligned_cols=211 Identities=9% Similarity=-0.013 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------hCCHH-------HHHHHHhhcCC---C-ChhhHHHHHHHHHhC
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAK-------CGSLD-------RSLLVFFKLRE---K-NLFCWNSIIEGLAVH 120 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~~li~~~~~~ 120 (331)
.+..+|++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4556677666653 4467778888888775 69987 89999998764 3 567899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCc-H-HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH-HHHcCCHHHH
Q 043124 121 GFAHEALAMFDRMIYENVEPN-G-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL-LSKAGLLEDA 197 (331)
Q Consensus 121 ~~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 197 (331)
|++++|..+|+++.+. +|+ . ..|...+..+.+.|+.++|..+|++..+.. +.+...|...+.. +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999986 443 3 578888888889999999999999998432 2223333332222 3468999999
Q ss_pred HHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 198 LELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG----YCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 198 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+..+.+++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999863 3345 5788889999999999999999999999997766554 77777888888999999999999987
Q ss_pred hcC
Q 043124 272 ELG 274 (331)
Q Consensus 272 ~~~ 274 (331)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 653
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=4.1e-12 Score=100.33 Aligned_cols=205 Identities=12% Similarity=0.038 Sum_probs=159.8
Q ss_pred CCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHH
Q 043124 38 SPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSII 114 (331)
Q Consensus 38 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li 114 (331)
+.|+..+......+...|++++|+..|+++++...+++...+..+..++...|++++|.+.|++..+. +..+|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34678888999999999999999999999999865467778888999999999999999999987643 456899999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc---HhHHHHH
Q 043124 115 EGLAVHGFAHEALAMFDRMIYENVEPNG-------VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE---VEHYGCM 184 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 184 (331)
.++...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|++..+ +.|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999999874 3345 4577788888999999999999999983 2454 5677777
Q ss_pred HHHHHHcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 185 VDLLSKAGLLEDALELIRSSK--FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
..+|...|+. .++++. ...+...+.... ....+.+++|...++++++..|++......+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777665543 233211 122344444433 3345679999999999999999988776655443
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=6e-12 Score=95.50 Aligned_cols=159 Identities=16% Similarity=0.035 Sum_probs=127.8
Q ss_pred HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 043124 41 QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGL 117 (331)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 117 (331)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.+.+++..+ .+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567778888999999999999999887764 44678889999999999999999999998753 3667899999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHH
Q 043124 118 AVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDA 197 (331)
Q Consensus 118 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 197 (331)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874 5577888888899999999999999999988432 23345555555666666666666
Q ss_pred HHHHHh
Q 043124 198 LELIRS 203 (331)
Q Consensus 198 ~~~~~~ 203 (331)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=9.2e-12 Score=106.21 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=126.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCCchHHHHHHHHHHHhCC-----CC-chhHHHH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGI-SPD----QVTMATVLSACAHLGALDLGREIHLYVMQIGF-----DI-DVYIGSA 81 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 81 (331)
...+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...++++.+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777664311 112 23566666677777777777777776655311 11 1345566
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCcHHHHHHH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLRE-----KN----LFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVEPNGVTFISV 148 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 148 (331)
+..+|...|++++|.+.|++..+ .+ ..+++.+..+|...|++++|.+.|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 66677777777777766665442 11 235666666666667777777666666551 122234555566
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCC---CCcHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCc-HHHHHHHHHHHh
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSI---TPEVEHYGCMVDLLSKAGL---LEDALELIRSSKFQPN-AVIWGALLGGCK 221 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~p~-~~~~~~l~~~~~ 221 (331)
...+.+.|++++|...+++..+...- +.....+..+...+...++ +.+|+..+++.+..|+ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 66666666666666666665532111 1112334444444555555 6666666665543333 223444555566
Q ss_pred hcCCHHHHHHHHHHHHh
Q 043124 222 LHRNLEIAHIAVNELMI 238 (331)
Q Consensus 222 ~~~~~~~a~~~~~~~~~ 238 (331)
..|++++|...++++++
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=3.3e-12 Score=116.99 Aligned_cols=162 Identities=9% Similarity=-0.009 Sum_probs=144.7
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+..+|+.|...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|+++++.. +.+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56789999999999999999999999999874 3367889999999999999999999999999985 446889999999
Q ss_pred HHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
+|.+.|++++|++.|++..+ .+..+|+.+..+|...|++++|++.|++.++.. +-+...+..+...+...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998764 366799999999999999999999999999874 44678888999999999999999
Q ss_pred HHHHHhhh
Q 043124 162 RRRFLSMT 169 (331)
Q Consensus 162 ~~~~~~~~ 169 (331)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888766
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=4e-11 Score=104.69 Aligned_cols=254 Identities=10% Similarity=-0.002 Sum_probs=152.4
Q ss_pred hhhHHHHHHHHHhCC-----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc---hHHHHHHHHHHHhCCCCchh
Q 043124 6 IISWTTMITCYSQNK-----QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL---DLGREIHLYVMQIGFDIDVY 77 (331)
Q Consensus 6 ~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ 77 (331)
...+..|...+...+ ++++|+..|++..+.|.. ..+..|...|...+.. ..+.+.+......| +..
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~ 142 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPE 142 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHH
Confidence 334455555444444 566777777777665422 2444555555443332 22333333333333 234
Q ss_pred HHHHHHHHHHhhC----CHHHHHHHHhhcCCCChhhHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 043124 78 IGSALVDMYAKCG----SLDRSLLVFFKLREKNLFCWNSIIEGLAVHG---FAHEALAMFDRMIYENVEPNGVTFISVLS 150 (331)
Q Consensus 78 ~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 150 (331)
.+..|...|...+ +.+++..+++.....++.++..+...|...| +.++|++.|++..+.| +++...+..+..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 4555566666655 3444555566666666667788888888888 7888888888887776 445554444555
Q ss_pred HHhcc----CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhc
Q 043124 151 ACTHA----GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL-L--SKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLH 223 (331)
Q Consensus 151 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~ 223 (331)
.|... ++.++|..+|++.. +-+...+..|... + ...+++++|++.|++.--.-+...+..|...|. .
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-E 295 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-c
Confidence 55544 67788888887765 2234455555555 3 457778888877776422235556666666655 4
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhcCC
Q 043124 224 R-----NLEIAHIAVNELMILEPNNSGYCTLLLNMYAE----VSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 224 ~-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 275 (331)
| ++++|.++|+++. |.++..+..|..+|.. ..++++|...|++..+.|.
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4 7778888777776 6667777777777766 3377777777777776553
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.44 E-value=1.1e-12 Score=106.67 Aligned_cols=152 Identities=11% Similarity=-0.010 Sum_probs=71.0
Q ss_pred hCCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh------CC-CCchhHHHHHH
Q 043124 18 QNKQFREALDAFNEMKNS-------GISPDQVTMATVLSACAHLGALDLGREIHLYVMQI------GF-DIDVYIGSALV 83 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 83 (331)
..|++++|+..|++..+. ..+....++..+...+...|++++|+..++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666666555441 11112334555555555566666666665555443 11 11234455555
Q ss_pred HHHHhhCCHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-cHHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLREK-----------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE------NVEP-NGVTF 145 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 145 (331)
.+|...|++++|.+.|++..+. ...++..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5555555555555555443310 1234444455555555555555555554432 0011 12334
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhh
Q 043124 146 ISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..+...+...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444555555555544444
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=1.2e-11 Score=101.70 Aligned_cols=197 Identities=10% Similarity=-0.056 Sum_probs=115.7
Q ss_pred HHHHHccCCchHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----C----hhhHHHH
Q 043124 48 LSACAHLGALDLGREIHLYVMQI----GFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREK-----N----LFCWNSI 113 (331)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l 113 (331)
...+...|++++|...|++..+. |-++. ..+|+.+..+|.+.|++++|+..|++..+- + ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566677777777777776553 21111 456777777777777777777777655431 1 2366777
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHcCC---CC-c-HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcH-----hHHH
Q 043124 114 IEGLAVH-GFAHEALAMFDRMIYENV---EP-N-GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV-----EHYG 182 (331)
Q Consensus 114 i~~~~~~-~~~~~a~~~~~~m~~~~~---~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 182 (331)
...|... |++++|+..|++..+... .+ . ..++..+...+...|++++|+..|++..+...-.+.. ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7777775 777777777777665311 00 0 2456666777777777777777777766321111111 1455
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCcHH------HHHHHHHHHh--hcCCHHHHHHHHHHHHhcCCCCc
Q 043124 183 CMVDLLSKAGLLEDALELIRSS-KFQPNAV------IWGALLGGCK--LHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
.+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|...++++..++|...
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 5666677777777777777763 3344321 2333444443 34557777777766666666543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=1.3e-11 Score=105.21 Aligned_cols=225 Identities=7% Similarity=-0.054 Sum_probs=169.9
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhhCCHHHHHHHHhhcCC-----C-----ChhhHH
Q 043124 47 VLSACAHLGALDLGREIHLYVMQIG--FD---IDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-----K-----NLFCWN 111 (331)
Q Consensus 47 l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~ 111 (331)
....+...|++++|+..++++.+.. .+ ....++..+..+|...|++++|...+++..+ + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4445678899999999999987642 11 1345788899999999999999988876542 1 134788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc---CCCCCcHhHHHH
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYE----NVE-PNGVTFISVLSACTHAGLVEEGRRRFLSMTCG---YSITPEVEHYGC 183 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 183 (331)
.+...|...|++++|.+.|++..+. +.+ ....++..+...+...|++++|...+++.... .+.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 9999999999999999999998763 211 12356778889999999999999999998841 022333677888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CC--CCc-HHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 184 MVDLLSKAGLLEDALELIRSS----KF--QPN-AVIWGALLGGCKLHRN---LEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
+...+.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999862 11 232 3445555555777888 77887777763 2334445667789999
Q ss_pred HHhcCCchHHHHHHHHHHh
Q 043124 254 YAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 254 ~~~~g~~~~a~~~~~~m~~ 272 (331)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998865
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=9.7e-12 Score=101.02 Aligned_cols=218 Identities=10% Similarity=-0.029 Sum_probs=152.8
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhCCCHH
Q 043124 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-----------NLFCWNSIIEGLAVHGFAH 124 (331)
Q Consensus 56 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~ 124 (331)
.+++|++++++......+....++..+..+|...|++++|...|++..+. ...++..+...+...|+++
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 35677777777665443446778889999999999999999998876521 3457889999999999999
Q ss_pred HHHHHHHHHHHc------C-CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc------CCCCCcHhHHHHHHHHHHHc
Q 043124 125 EALAMFDRMIYE------N-VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG------YSITPEVEHYGCMVDLLSKA 191 (331)
Q Consensus 125 ~a~~~~~~m~~~------~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 191 (331)
+|.+.|++..+. . .+....++..+...+...|++++|...+++..+. ...+....++..+...|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 999999998765 1 1234677888889999999999999999998743 11223467888899999999
Q ss_pred CCHHHHHHHHHhC----------CCCCcH-HHHHHHHHHHhhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 192 GLLEDALELIRSS----------KFQPNA-VIWGALLGGCKLH------RNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 192 ~~~~~a~~~~~~~----------~~~p~~-~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
|++++|...+++. ...+.. ..+..+....... ..+..+...++......|.....+..++.+|
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999988752 123332 2333333333222 2234444444443334466667788899999
Q ss_pred HhcCCchHHHHHHHHHHhc
Q 043124 255 AEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 255 ~~~g~~~~a~~~~~~m~~~ 273 (331)
...|++++|..++++..+.
T Consensus 263 ~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.36 E-value=1.9e-10 Score=93.41 Aligned_cols=238 Identities=11% Similarity=0.002 Sum_probs=167.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
|+-..-.|++..++.-..++. .......-..+.+++...|++..+. .-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc--
Confidence 566777899988887433322 1222233344567888888776421 2234443444444433 322
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCcHHHHHHHHHhh
Q 043124 93 DRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV-EPNGVTFISVLSACTHAGLVEEGRRRFLSM 168 (331)
Q Consensus 93 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 168 (331)
|++.|++..+ ++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777653 4555667888899999999999999999877653 236777888889999999999999999999
Q ss_pred hhcCCCCC-----cHhHHHHHHHH--HHHcC--CHHHHHHHHHhCC-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 169 TCGYSITP-----EVEHYGCMVDL--LSKAG--LLEDALELIRSSK-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 169 ~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.+. .| +..+...|+.+ ....| ++.+|..+|+++. ..|+..+...++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 832 55 34555556655 33334 8999999999864 345534444555588899999999999998776
Q ss_pred c----------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 239 L----------EPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 239 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
. +|+++.+...+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 5 58889898788888888887 88899999874
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=1.3e-10 Score=95.48 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCC---C--ch
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNS----GISPD-QVTMATVLSACAHLGALDLGREIHLYVMQIGFD---I--DV 76 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~ 76 (331)
..|+.....|...|++++|...|.+.... |-+++ ..+|+.+..+|...|++++|+..+++.++.... + ..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35788888999999999999999988653 22222 468899999999999999999999998765211 1 14
Q ss_pred hHHHHHHHHHHhh-CCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH----
Q 043124 77 YIGSALVDMYAKC-GSLDRSLLVFFKLREK-----N----LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG---- 142 (331)
Q Consensus 77 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---- 142 (331)
.+++.+..+|... |++++|+..|++..+. + ..+++.+...+.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 9999999999877642 1 346889999999999999999999999986432221
Q ss_pred --HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc------HhHHHHHHHHHH--HcCCHHHHHHHHHhCC-CCCcH
Q 043124 143 --VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE------VEHYGCMVDLLS--KAGLLEDALELIRSSK-FQPNA 210 (331)
Q Consensus 143 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~a~~~~~~~~-~~p~~ 210 (331)
..+..+..++...|++++|...|++..+ +.|+ ...+..++.++. ..+++++|+..|+++. ..|+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2567778889999999999999999883 2333 123444555554 4578999999998753 44543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=1.4e-10 Score=93.44 Aligned_cols=206 Identities=9% Similarity=-0.044 Sum_probs=136.2
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---C---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCcHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREK---N---LFCWNSIIEGLAVHGFAHEALAMFDRMIYENV--EPNGVTFI 146 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~ 146 (331)
+...+-.+...+.+.|++++|...|+++.+. + ..++..+..++.+.|++++|...|++..+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455556667777777777777777776542 2 45677777778888888888888888777531 12244555
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHH
Q 043124 147 SVLSACTH--------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLG 218 (331)
Q Consensus 147 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~ 218 (331)
.+..++.. .|++++|...|+++.+.. +.+......+.......+.. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 56666766 888888888888877432 11222222221111111111 112456777
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCCCCccceE
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNS---GYCTLLLNMYAEV----------SRWAEVTKIRVAMKELGIEKRCPGSSWI 285 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 285 (331)
.+...|++++|...++++++..|++. ..+..++.+|... |++++|...++++.+.. |+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~------- 227 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PD------- 227 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TT-------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CC-------
Confidence 89999999999999999999888854 4677888889876 89999999999998542 11
Q ss_pred EeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhc
Q 043124 286 EMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLA 321 (331)
Q Consensus 286 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~ 321 (331)
+|........+..++..+++.
T Consensus 228 ---------------~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 ---------------SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp ---------------CTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHHh
Confidence 233356667777777766653
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=4e-10 Score=95.78 Aligned_cols=230 Identities=12% Similarity=0.002 Sum_probs=167.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhhCCHHHHHHHHhhcCC-----CCh----hhH
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDV----YIGSALVDMYAKCGSLDRSLLVFFKLRE-----KNL----FCW 110 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~ 110 (331)
.......+...|+++.|...+++.+......+. .+++.+...+...|++++|.+.+++..+ .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334455667889999999999998886422222 2566778889999999999999987653 122 346
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC---CCCcHhH
Q 043124 111 NSIIEGLAVHGFAHEALAMFDRMIYE----NVE--P-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS---ITPEVEH 180 (331)
Q Consensus 111 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~ 180 (331)
..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++...... .......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 77888999999999999999988753 222 3 244566678889999999999999998773221 1112356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC---CCC-cHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc----hH
Q 043124 181 YGCMVDLLSKAGLLEDALELIRSSK---FQP-NAVIWG-----ALLGGCKLHRNLEIAHIAVNELMILEPNNSG----YC 247 (331)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~p-~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~ 247 (331)
+..+...+...|++++|...+++.. -.+ ....+. ..+..+...|++++|...++++....|.+.. .+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7778888999999999999987531 111 111121 2333477899999999999999886654322 35
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 248 TLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 248 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
..+..++...|++++|...+++..+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67889999999999999999988653
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=8.4e-10 Score=96.32 Aligned_cols=255 Identities=9% Similarity=-0.049 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFRE---ALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV 83 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 83 (331)
..+..|...|...+..++ +.+.+......| +...+..|...|...+.++.+........+.-...+...+..|.
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg 183 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELA 183 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356677777777665444 444455544444 34566677778877776666655544444332333445888888
Q ss_pred HHHHhhC---CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-H
Q 043124 84 DMYAKCG---SLDRSLLVFFKLREK---NLFCWNSIIEGLAVH----GFAHEALAMFDRMIYENVEPNGVTFISVLSA-C 152 (331)
Q Consensus 84 ~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~ 152 (331)
.+|...| +.++|.+.|++..+. +...+..+...|... +++++|+..|++.. .| +...+..+... +
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLY 259 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHH
Confidence 8999899 888999998877543 333446777777655 68999999999987 43 33444445544 3
Q ss_pred --hccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCcHHHHHHHHHHHhh---
Q 043124 153 --THAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG-----LLEDALELIRSSKFQPNAVIWGALLGGCKL--- 222 (331)
Q Consensus 153 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~--- 222 (331)
...++.++|...|++.. ..| +...+..|...|. .| ++++|++.|++.- .-+...+..|...|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYL 333 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTT
T ss_pred hCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCC
Confidence 56889999999999988 433 5566777777776 55 9999999999876 5667777777777665
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhcCCC
Q 043124 223 -HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE----VSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 223 -~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 276 (331)
..++++|..+++++.+. .++.....|..+|.. ..+.++|...++...+.|..
T Consensus 334 ~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp SSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 34899999999988763 345566778888875 45888999999998887743
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=9.7e-12 Score=91.42 Aligned_cols=142 Identities=14% Similarity=-0.011 Sum_probs=95.6
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcC
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPE-VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHR 224 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 224 (331)
|...+...|++++|+..+.... . ..|+ ...+-.+...|.+.|++++|++.|++. ...| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~-~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST-P--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS-C--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc-c--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3345566677777777777766 2 1332 444556777777888888888877763 3445 4667777777788888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCC
Q 043124 225 NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKI-RVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPA 303 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 303 (331)
++++|...++++++++|+++..+..++.+|.+.|++++|... +++..+ .+|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---------------------------l~P~ 132 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---------------------------LFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---------------------------HSTT
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------------------------hCcC
Confidence 888888888888888888788877888888888887765554 466552 3477
Q ss_pred chHHHHHHHHHHHHHH
Q 043124 304 SDEIYSSLSKLDEQLK 319 (331)
Q Consensus 304 ~~~~~~~l~~l~~~~~ 319 (331)
++.++...++++...|
T Consensus 133 ~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777665433
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=4.8e-10 Score=90.33 Aligned_cols=167 Identities=7% Similarity=-0.046 Sum_probs=113.0
Q ss_pred CCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCC--Cchh
Q 043124 3 ARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPD---QVTMATVLSACAHLGALDLGREIHLYVMQIGFD--IDVY 77 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 77 (331)
+.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|+..|+++++.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456667777888888899999999998888763 223 567777888888889999999998888887421 2245
Q ss_pred HHHHHHHHHHh--------hCCHHHHHHHHhhcCC--C-ChhhH-----------------HHHHHHHHhCCCHHHHHHH
Q 043124 78 IGSALVDMYAK--------CGSLDRSLLVFFKLRE--K-NLFCW-----------------NSIIEGLAVHGFAHEALAM 129 (331)
Q Consensus 78 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~--~-~~~~~-----------------~~li~~~~~~~~~~~a~~~ 129 (331)
++..+..++.. .|++++|...|+++.+ | +.... ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66677778887 8888888888887764 2 22223 4456666677777777777
Q ss_pred HHHHHHcCCCC--cHHHHHHHHHHHhcc----------CcHHHHHHHHHhhhh
Q 043124 130 FDRMIYENVEP--NGVTFISVLSACTHA----------GLVEEGRRRFLSMTC 170 (331)
Q Consensus 130 ~~~m~~~~~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~ 170 (331)
|+++.+..... ....+..+..++... |++++|...|+.+.+
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 77766643111 234455555555544 666777777776663
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=5.2e-10 Score=79.79 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.... +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR------------- 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CC-------------
Confidence 4444555555555555555555554432 2234444444455555555555555555544211 11
Q ss_pred HcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 043124 190 KAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 269 (331)
+...+..+...+...|++++|.+.++++....|.+...+..++.++.+.|++++|...+++
T Consensus 68 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 68 -------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 2333344444444555555555555555555554444445555555555555555555555
Q ss_pred HHh
Q 043124 270 MKE 272 (331)
Q Consensus 270 m~~ 272 (331)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=6.6e-10 Score=90.92 Aligned_cols=177 Identities=8% Similarity=-0.061 Sum_probs=143.3
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhc
Q 043124 92 LDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCG 171 (331)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (331)
.+...+.+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4455566666665566778889999999999999999999999874 456778888999999999999999999999833
Q ss_pred CCCCCcHhHHH-HHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cch
Q 043124 172 YSITPEVEHYG-CMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN--SGY 246 (331)
Q Consensus 172 ~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 246 (331)
.|+..... .....+...++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 34533332 2233466778888888888763 3445 57888889999999999999999999999999988 778
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 247 CTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 247 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+..++.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 89999999999999999999887653
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=4.3e-10 Score=80.19 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSSK-F-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 257 (331)
.+..+...+...|++++|..+++++. . ..+...+..+...+...|++++|...++++....|.+...+..++..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 46677888888899999988887642 2 235677888888899999999999999999999999888999999999999
Q ss_pred CCchHHHHHHHHHHhcC
Q 043124 258 SRWAEVTKIRVAMKELG 274 (331)
Q Consensus 258 g~~~~a~~~~~~m~~~~ 274 (331)
|++++|...++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999998754
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=9.6e-10 Score=86.53 Aligned_cols=184 Identities=15% Similarity=0.035 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-Cc-HHHHHH
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLRE--KN----LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PN-GVTFIS 147 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~ 147 (331)
...+..+...+.+.|++++|...|+++.+ |+ ...+..++.++.+.|++++|+..|+++.+.... +. ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556677888899999999999998764 32 246888889999999999999999998876421 11 123444
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 043124 148 VLSACTH------------------AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN 209 (331)
Q Consensus 148 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~ 209 (331)
+..++.. .|+.++|...|+++.+.+ +-+...+....... ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----~~~~~~----------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----FLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----HHHHHH-----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----HHHHHH-----------
Confidence 4444443 467888888888877332 22222222211110 000000
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS---GYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 210 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
......+...+...|++++|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113455668899999999999999999999875 55788999999999999999999998876543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=3.6e-10 Score=103.74 Aligned_cols=149 Identities=11% Similarity=-0.024 Sum_probs=78.5
Q ss_pred HhCCChhHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 17 SQNKQFREALDAFNEMK--------NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 17 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|+..++++++.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555555 221 2233445555555555555555555555555543 2244555555555555
Q ss_pred hCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 89 CGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
.|++++|.+.|++..+ .+...|..+..++.+.|++++ ++.|++..+.+ +.+...+..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432 133455555555555555555 55555555543 233445555555555555555555555
Q ss_pred Hhhh
Q 043124 166 LSMT 169 (331)
Q Consensus 166 ~~~~ 169 (331)
++..
T Consensus 558 ~~al 561 (681)
T 2pzi_A 558 DEVP 561 (681)
T ss_dssp HTSC
T ss_pred Hhhc
Confidence 5555
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=7.9e-11 Score=108.07 Aligned_cols=169 Identities=9% Similarity=-0.099 Sum_probs=136.7
Q ss_pred HhhCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 043124 87 AKCGSLDRSLLVFFKLR-----------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 155 (331)
...|++++|++.|++.. ..+...+..+..++...|++++|++.|+++.+.+ +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67889999999988775 2356788888999999999999999999988864 45677888888889999
Q ss_pred CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 156 GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
|++++|...|++..+.. +-+...+..+..++.+.|++++ ++.|++. ...| +...+..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988432 3346778888889999999999 8888863 3445 4678888888899999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCC
Q 043124 234 NELMILEPNNSGYCTLLLNMYAEVSR 259 (331)
Q Consensus 234 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 259 (331)
+++++.+|++...+..+..++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999988888888888877655
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=1.1e-09 Score=88.97 Aligned_cols=179 Identities=11% Similarity=0.005 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043124 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK-----NLFCWNSIIEGLAVHGFAHEALAMFDRMI 134 (331)
Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 134 (331)
++..+++..+.+ +++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777665 455566678899999999999999999987443 45678889999999999999999999998
Q ss_pred HcCCCC-----cHHHHHHHHHH--HhccC--cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 043124 135 YENVEP-----NGVTFISVLSA--CTHAG--LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 135 ~~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
+. .| +..+...++.+ ....| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 85 56 35555556655 33334 899999999999843 3543333444458899999999999987532
Q ss_pred -C----------CC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 206 -F----------QP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 206 -~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
. .| +..+...+|......|+ .|.++++++....|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 24 46666566666666776 8999999999999997655
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=2e-11 Score=89.69 Aligned_cols=143 Identities=8% Similarity=-0.078 Sum_probs=97.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL 193 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (331)
...+...|++++|++.+++..... +-+...+..+...|.+.|++++|+..|++..+.. +-+...|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 344455666777777777765431 1223444556677777777777777777777332 3346677777778888888
Q ss_pred HHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 043124 194 LEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHI-AVNELMILEPNNSGYCTLLLNMYAEVSR 259 (331)
Q Consensus 194 ~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 259 (331)
+++|+..|++. ...| +...+..+...+...|++++|.+ +++++++++|+++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888887763 3455 46677778888888888766554 4688888999988888877888877775
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=1e-09 Score=85.24 Aligned_cols=183 Identities=14% Similarity=0.063 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPD-QVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA 87 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (331)
+-.....+...|++++|+..|++..+.. |+ ...|... ..... ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 3344556667777777777777776642 32 2233220 00000 0001112233666666
Q ss_pred hhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc--HHHHH
Q 043124 88 KCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL--VEEGR 162 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~ 162 (331)
+.|++++|...|++..+ .+..+|..+..++...|++++|...|++..+.+ |.+..++..+...+...|. .+.+.
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77777777777666543 245566677777777777777777777776653 3345666666666554443 33445
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcHHHHHHH
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNAVIWGAL 216 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~~~~~~l 216 (331)
..++... ...|....+.....++...|++++|+..|++ +...|+......+
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555444 1122222333344455566777777777765 4456665544433
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=2.6e-09 Score=82.94 Aligned_cols=181 Identities=7% Similarity=-0.065 Sum_probs=125.6
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 122 (331)
.+......+...|++++|+..|+++++.. +.+...+... ..... ........+.+..++.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 34444556667788888888888887763 1122222110 01100 00112334558899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC--HHHHHHH
Q 043124 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL--LEDALEL 200 (331)
Q Consensus 123 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~ 200 (331)
+++|+..|++..+.+ |-+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|+ .+.+...
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999875 5578888999999999999999999999998432 3457788888888876654 4455666
Q ss_pred HHhCCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 201 IRSSKFQPNA--VIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 201 ~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
++... .|+. ..+.....++...|++++|...|++++++.|++
T Consensus 147 ~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 147 YKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66543 3443 344445556778899999999999999999984
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.17 E-value=7e-10 Score=91.70 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=145.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 98 (331)
.|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467888888888877642 111 0 11146777777776654 3456677888887777
Q ss_pred HhhcCCC-----C----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHH
Q 043124 99 FFKLREK-----N----LFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVEP-NGVTFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 99 ~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 164 (331)
|.+..+- + ..+|+.+...|...|++++|+..|++..+. |-+. ...++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7655421 1 346788888888888888888888887653 2111 13567777788888 999999999
Q ss_pred HHhhhhcC---CCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCc-HHHHHHHHHHHhhcCCHHHHHHH
Q 043124 165 FLSMTCGY---SITP-EVEHYGCMVDLLSKAGLLEDALELIRSSK-------FQPN-AVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 165 ~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
|++..+.. +-.+ ...++..+...|.+.|++++|+..+++.. ..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98876321 1111 14577788888999999999998887531 1111 22556666667788999999999
Q ss_pred HHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 043124 233 VNELMILEPNNSGY-----CTLLLNMYAEVSRWAEVTK 265 (331)
Q Consensus 233 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 265 (331)
+++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865433 23445555 5677666555
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=1.1e-09 Score=82.65 Aligned_cols=159 Identities=10% Similarity=0.048 Sum_probs=102.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH-H
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL-L 188 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 188 (331)
+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|...|+...... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 4445555666666666666666665542 3345556666666666677777777666665222 232222221111 1
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHH
Q 043124 189 SKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN--SGYCTLLLNMYAEVSRWAEVT 264 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~ 264 (331)
...+...+|+..+++. ...| +...+..+..++...|++++|...++++++..|+. ...+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223355566542 3445 47778888888999999999999999999988865 447788999999999999999
Q ss_pred HHHHHHHh
Q 043124 265 KIRVAMKE 272 (331)
Q Consensus 265 ~~~~~m~~ 272 (331)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=4.7e-09 Score=81.74 Aligned_cols=158 Identities=8% Similarity=-0.119 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----cHHHHHHHHHhhhhcCCCCCcHhHHHH
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG----LVEEGRRRFLSMTCGYSITPEVEHYGC 183 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 183 (331)
.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|..+|++.. ..+ +...+..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g---~~~a~~~ 90 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTT---CHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCC---CHHHHHH
Confidence 334444444444444444444444444433 22333333334443 3 4555555555544 211 2334444
Q ss_pred HHHHHHH----cCCHHHHHHHHHhC-CCCCc---HHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 043124 184 MVDLLSK----AGLLEDALELIRSS-KFQPN---AVIWGALLGGCKL----HRNLEIAHIAVNELMILEPNNSGYCTLLL 251 (331)
Q Consensus 184 l~~~~~~----~~~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 251 (331)
|...|.. .+++++|++.|++. ...|+ ...+..|...|.. .+++++|..+++++.+. |.++..+..|.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 4444444 45555555555542 22221 4455555555555 55666666666666665 33344555666
Q ss_pred HHHHhc-C-----CchHHHHHHHHHHhcC
Q 043124 252 NMYAEV-S-----RWAEVTKIRVAMKELG 274 (331)
Q Consensus 252 ~~~~~~-g-----~~~~a~~~~~~m~~~~ 274 (331)
.+|... | ++++|...+++..+.|
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666543 2 6666776666666555
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=1.1e-09 Score=98.55 Aligned_cols=160 Identities=13% Similarity=0.029 Sum_probs=123.9
Q ss_pred hCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHH
Q 043124 89 CGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRF 165 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 165 (331)
.|++++|.+.|++..+. +...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47899999999988753 56789999999999999999999999999874 456788888999999999999999999
Q ss_pred HhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhc---CCHHHHHHHHHHHHhcC
Q 043124 166 LSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLH---RNLEIAHIAVNELMILE 240 (331)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 240 (331)
++..+.. +.+...+..+..+|...|++++|.+.+++. ...| +...+..+..++... |+.++|.+.++++++..
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998432 345778899999999999999999999874 3344 577888888899999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 043124 241 PNNSGYCTLLL 251 (331)
Q Consensus 241 p~~~~~~~~l~ 251 (331)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888876555
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=2.8e-09 Score=87.17 Aligned_cols=157 Identities=8% Similarity=-0.036 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH-HHHHHH
Q 043124 76 VYIGSALVDMYAKCGSLDRSLLVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTF-ISVLSA 151 (331)
Q Consensus 76 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~ 151 (331)
...+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|...++++.... |+.... ......
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 33344444444444444444444444331 1 33344444444444444444444444443331 222111 111122
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc---HHHHHHHHHHHhhcCCHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN---AVIWGALLGGCKLHRNLE 227 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~ 227 (331)
+...++.+.|...+++..... +.+...+..+...+...|++++|++.+++. ...|+ ...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 333344444444444444221 223444444444445555555554444432 11221 334444444444555555
Q ss_pred HHHHHHHHH
Q 043124 228 IAHIAVNEL 236 (331)
Q Consensus 228 ~a~~~~~~~ 236 (331)
.|...+++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 554444444
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=2.6e-09 Score=96.12 Aligned_cols=147 Identities=9% Similarity=-0.099 Sum_probs=110.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHH
Q 043124 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMF 130 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 130 (331)
.|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|++..+. +..+|..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 446788999999999999999999999987653 5678999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 043124 131 DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA---GLLEDALELIRSS 204 (331)
Q Consensus 131 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 204 (331)
++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999874 4567888889999999999999999999988432 34577888899999999 9999999999863
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=2.1e-07 Score=76.17 Aligned_cols=230 Identities=9% Similarity=-0.012 Sum_probs=171.9
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--CchHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhh--
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG--ALDLGREIHLYVMQIGFDIDVYIGSALVDMY----AKC-- 89 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 89 (331)
+....++|+.+++++...+ +-+...|+.-..++...| ++++++..++.++... +-+..+|+.-..++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3344568999999999874 335567787777888888 9999999999999885 44666777665555 555
Q ss_pred -CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc------
Q 043124 90 -GSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAH--EALAMFDRMIYENVEPNGVTFISVLSACTHAGL------ 157 (331)
Q Consensus 90 -g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------ 157 (331)
+++++++++++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|-..|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 788999999988875 35667877777888888888 9999999999876 4567777766666666665
Q ss_pred HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHH-HHHHHHhCC-C----CCcHHHHHHHHHHHhhcCCHHHHHH
Q 043124 158 VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED-ALELIRSSK-F----QPNAVIWGALLGGCKLHRNLEIAHI 231 (331)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~ 231 (331)
+++++..++.+.... +-+...|+.+-..+.+.|+... +.++..+.- . ..+...+..+..++.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 888888888888432 5567888888888888877544 445555432 1 2356778888888888899999999
Q ss_pred HHHHHHh-cCCCCcchHHHHHH
Q 043124 232 AVNELMI-LEPNNSGYCTLLLN 252 (331)
Q Consensus 232 ~~~~~~~-~~p~~~~~~~~l~~ 252 (331)
+++.+.+ .+|....+|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999886 78887777765443
No 108
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=5.1e-08 Score=88.53 Aligned_cols=242 Identities=9% Similarity=-0.015 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHH-HHHHHHHHhCCCCchhH
Q 043124 7 ISWTTMITCYSQNK-------QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGR-EIHLYVMQIGFDIDVYI 78 (331)
Q Consensus 7 ~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 78 (331)
..|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|+.+.|. .+++.+... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45666665544332 134566789888876 3557788888888888889999996 999999876 4556777
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-------------CC------------hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLRE-------------KN------------LFCWNSIIEGLAVHGFAHEALAMFDRM 133 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m 133 (331)
|..++....+.|++++|.++|+++.+ |+ ..+|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889999999999999999998764 21 236888888888899999999999999
Q ss_pred HHc-CCCCcHHHHHHHHHHHhc-cCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--
Q 043124 134 IYE-NVEPNGVTFISVLSACTH-AGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-- 208 (331)
Q Consensus 134 ~~~-~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-- 208 (331)
.+. + .++...|...+..-.+ .++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 876 3 1223333332222223 356899999999998553 445667788888888999999999999973 3334
Q ss_pred --cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 209 --NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 209 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
....|...+..-...|+.+.+.++.+++.+..|++..+ ..++.-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~-~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL-EEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH-HHHHHHh
Confidence 35678888888889999999999999999999987654 4444444
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=2.5e-09 Score=75.85 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 179 EHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|++...|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666777777777766652 2333 456666666667777777777777777777777777777777777777
Q ss_pred cCCchHHHHHHHHHHh
Q 043124 257 VSRWAEVTKIRVAMKE 272 (331)
Q Consensus 257 ~g~~~~a~~~~~~m~~ 272 (331)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777776653
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=1.3e-08 Score=80.01 Aligned_cols=185 Identities=13% Similarity=0.025 Sum_probs=107.0
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCch---hHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGIS-P-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDV---YIG 79 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 79 (331)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++...|++++|+..|+++++.... +. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 3445666778888999999999999999876322 1 1356778888999999999999999999987432 22 244
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH---------------
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT--------------- 144 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------------- 144 (331)
..+..++...|.. .+ ..|..+...+...|++++|...|+++++.. |-+...
T Consensus 82 ~~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHH
Confidence 4555555543210 00 011112222223344444444444444331 111111
Q ss_pred --HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC-cHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 145 --FISVLSACTHAGLVEEGRRRFLSMTCGYSITP-EVEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 145 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
...+...+.+.|++++|...|+.+.+.+.-.| ....+..+..+|.+.|++++|.+.++.+
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 12345567777777777777777774431111 1245666777777777777777777653
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=6.6e-09 Score=80.70 Aligned_cols=128 Identities=13% Similarity=-0.011 Sum_probs=109.7
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~ 79 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 45567778889999999999999998873 5688899999999999999999999999999885 456788999999
Q ss_pred HHHhhCCHHHHHHHHhhcCCC---Ch----------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043124 85 MYAKCGSLDRSLLVFFKLREK---NL----------------FCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~---~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 137 (331)
+|...|++++|.+.|++..+. +. .++..+..++...|++++|.+.|++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999877541 22 678889999999999999999999998764
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=2.2e-08 Score=77.96 Aligned_cols=170 Identities=8% Similarity=-0.054 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC----CHHHHHHHH
Q 043124 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG----SLDRSLLVF 99 (331)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 99 (331)
+|++.|++..+.| ++..+..|...+...+++++|...|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 55666667777777777777777777776654 44556666666666 5 677777777
Q ss_pred hhcCCC-ChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhc----cCcHHHHHHHHHhhh
Q 043124 100 FKLREK-NLFCWNSIIEGLAV----HGFAHEALAMFDRMIYENVE-PNGVTFISVLSACTH----AGLVEEGRRRFLSMT 169 (331)
Q Consensus 100 ~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~ 169 (331)
++..++ +..++..+...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .++.++|..+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 766543 55566667776666 66777777777777665421 014555556666665 667777777777776
Q ss_pred hcCCCCCcHhHHHHHHHHHHHc-C-----CHHHHHHHHHh
Q 043124 170 CGYSITPEVEHYGCMVDLLSKA-G-----LLEDALELIRS 203 (331)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~ 203 (331)
+. ..+...+..|...|... | ++++|...|++
T Consensus 157 ~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 157 SL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp HT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 22 22334555566666543 2 67777777765
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=4.2e-09 Score=79.41 Aligned_cols=52 Identities=6% Similarity=-0.065 Sum_probs=21.0
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhc
Q 043124 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 102 (331)
.+...|++++|...++++++.. +.+...+..+..++...|++++|...|++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3334444444444444433331 123333444444444444444444444443
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=4.4e-08 Score=80.26 Aligned_cols=161 Identities=9% Similarity=-0.066 Sum_probs=118.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH----HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc----HhHHH
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYEN-VEPNGV----TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYG 182 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 182 (331)
..+..+...|++++|...+++..+.. ..|+.. .+..+...+...+++++|...|++..+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999998887643 122221 2334666677788999999999998842211222 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC--------CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC------CcchH
Q 043124 183 CMVDLLSKAGLLEDALELIRSS--------KFQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMILEPN------NSGYC 247 (331)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~ 247 (331)
.+...|...|++++|+..+++. ...+. ..++..+...|...|++++|...++++++..+. ...+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999998888753 11222 346788888899999999999999999884322 25678
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 043124 248 TLLLNMYAEVSR-WAEVTKIRVAMKE 272 (331)
Q Consensus 248 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 272 (331)
..++.+|.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999995 5999999888764
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=1e-07 Score=77.98 Aligned_cols=216 Identities=12% Similarity=0.031 Sum_probs=168.7
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC--CHHHHHHHHhhcCCC---ChhhHHHHHHHH----HhC---
Q 043124 53 HLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG--SLDRSLLVFFKLREK---NLFCWNSIIEGL----AVH--- 120 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~li~~~----~~~--- 120 (331)
.....++|+...+.++..+ +-+..+|+.-..++...| +++++++.++.+... +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3344579999999999986 446778888888888888 999999999988753 445666655555 455
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH--HHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC-----
Q 043124 121 GFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE--EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL----- 193 (331)
Q Consensus 121 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 193 (331)
++++++++.++++.+.+ +-+...++.-...+.+.|.++ +++..++++.+.. +-+-..|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence 78999999999999875 557778877777777788887 9999999999543 4566777776666666666
Q ss_pred -HHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHH
Q 043124 194 -LEDALELIRSS-KFQP-NAVIWGALLGGCKLHRN-LEIAHIAVNELMILE---PNNSGYCTLLLNMYAEVSRWAEVTKI 266 (331)
Q Consensus 194 -~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 266 (331)
++++++.+++. ...| |...|+.+-..+.+.|+ .+.+..+..++...+ |.++.+...++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88888888763 3445 67788877777877777 444667877777765 77888889999999999999999999
Q ss_pred HHHHHh
Q 043124 267 RVAMKE 272 (331)
Q Consensus 267 ~~~m~~ 272 (331)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=1.6e-08 Score=78.51 Aligned_cols=128 Identities=9% Similarity=-0.079 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...|++..+.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 45566667777777777777777662 4566677777777777777777777777776332 33456677777777
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-----------------cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 189 SKAGLLEDALELIRSS-KFQP-----------------NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
...|++++|++.+++. ...| ....+..+..++...|++++|...++++++..|+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777652 1112 1255666666677777777777777777777665
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=1.1e-08 Score=84.44 Aligned_cols=196 Identities=9% Similarity=-0.041 Sum_probs=121.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhhCCHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGF---DI--DVYIGSALVDMYAKCGSLD 93 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~ 93 (331)
.+++++|...|.+. ...|...|++++|...+.++.+... .+ -..+++.+..+|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 45666666666654 3456667777777777776655311 01 1346677777777777777
Q ss_pred HHHHHHhhcCC-------C--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHhccCcHH
Q 043124 94 RSLLVFFKLRE-------K--NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENV---EP--NGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 94 ~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~ 159 (331)
+|...|++..+ + -..+++.+...|.. |++++|+..|++..+... .+ ...++..+...+...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 77776665432 1 12467777777777 888888888887765311 01 1356677778888888888
Q ss_pred HHHHHHHhhhhc---CCCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcH------HHHHHHHHHHhhcCCHHHH
Q 043124 160 EGRRRFLSMTCG---YSITPE-VEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA------VIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 160 ~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a 229 (331)
+|+..|++..+. .+..+. ...+..+..++...|++++|...|++.-..|+. .....++.++ ..++.+.+
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 888888876632 121222 235666667777778888888888763244421 2233444444 56776666
Q ss_pred HH
Q 043124 230 HI 231 (331)
Q Consensus 230 ~~ 231 (331)
..
T Consensus 252 ~~ 253 (307)
T 2ifu_A 252 LR 253 (307)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=2.1e-09 Score=87.65 Aligned_cols=51 Identities=8% Similarity=-0.082 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHhc
Q 043124 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV-SRWAEVTKIRVAMKEL 273 (331)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 273 (331)
.|+.++|.+.++++++.+|++......+...+.+. +.+++|..+|++..+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57888888888888888887666656666656555 6677888888877654
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.98 E-value=5.3e-09 Score=76.43 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=74.1
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
+...+..+...+...|++++|+..|++. ...| +...|..+..++...|++++|...+++++...|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3555666777778888888888888763 2334 5667777777788888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHHHhc
Q 043124 255 AEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 255 ~~~g~~~~a~~~~~~m~~~ 273 (331)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887653
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=3.1e-08 Score=81.15 Aligned_cols=164 Identities=7% Similarity=-0.094 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccCcHHHHHHHHHhhhhcCC--CCCc--Hh
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG-----VTFISVLSACTHAGLVEEGRRRFLSMTCGYS--ITPE--VE 179 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 179 (331)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877765322111 2233455566778889999998888763211 1111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC------Cc
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSS-------KFQP--NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN------NS 244 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 244 (331)
+++.+...|...|++++|+..+++. +..+ ...++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999998888753 1112 1257788888899999999999999999874321 14
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 043124 245 GYCTLLLNMYAEVSRWAEV-TKIRVAMKE 272 (331)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 272 (331)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5678889999999999999 777777653
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=1.1e-08 Score=74.77 Aligned_cols=101 Identities=10% Similarity=-0.036 Sum_probs=83.4
Q ss_pred CCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 043124 174 ITPE-VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL 250 (331)
Q Consensus 174 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 250 (331)
+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 556777788888899999999988864 3445 577788888888999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcC
Q 043124 251 LNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 251 ~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
+.+|.+.|++++|...|++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999888653
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=3.2e-07 Score=75.09 Aligned_cols=202 Identities=7% Similarity=-0.049 Sum_probs=139.6
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchh---HHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 043124 28 AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY---IGSALVDMYAKCGSLDRSLLVFFKLRE 104 (331)
Q Consensus 28 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 104 (331)
.+.++......|+..+...+...+.-. ++ .++ ......+.. .+...+..+...|++++|.+.+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~--~~---~~~----~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIP--II---HFY----EVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCC--TH---HHH----HTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcC--HH---HHh----CCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 444555444567777766666655321 11 111 111122222 233346778899999999999988754
Q ss_pred C---Ch------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCcHHHHHHHHHhhhh
Q 043124 105 K---NL------FCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-PN----GVTFISVLSACTHAGLVEEGRRRFLSMTC 170 (331)
Q Consensus 105 ~---~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (331)
. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+...|...|++++|...|+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 13445777788888999999999999874322 22 33688899999999999999999999873
Q ss_pred c---C-CCCCc-HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 043124 171 G---Y-SITPE-VEHYGCMVDLLSKAGLLEDALELIRSS-------KFQPN-AVIWGALLGGCKLHR-NLEIAHIAVNEL 236 (331)
Q Consensus 171 ~---~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 236 (331)
. . +..+. ..++..+...|.+.|++++|+..+++. +..+. ..++..+..++...| ++++|.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1 1 11222 447888999999999999999988752 22222 667888888899999 579999999999
Q ss_pred Hh
Q 043124 237 MI 238 (331)
Q Consensus 237 ~~ 238 (331)
+.
T Consensus 264 l~ 265 (293)
T 3u3w_A 264 SF 265 (293)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=3e-08 Score=70.17 Aligned_cols=109 Identities=12% Similarity=-0.005 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 043124 143 VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGC 220 (331)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 220 (331)
..+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 455566777777788888888887776332 335667777778888888888888887763 3344 467788888889
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
...|++++|.+.|+++++++|++..++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999988887666543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=4.1e-08 Score=72.74 Aligned_cols=127 Identities=7% Similarity=-0.061 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHh
Q 043124 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCK 221 (331)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 221 (331)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455556666677777777777666322 234566666777777777777777777653 2233 4667777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHH--HHHHhcCCchHHHHHHHHHHh
Q 043124 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLL--NMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 272 (331)
..|++++|...++++++..|.+...+..+. ..+.+.|++++|...++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 889999999999999988888777764444 447788999999988887654
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.3e-07 Score=75.80 Aligned_cols=192 Identities=8% Similarity=-0.111 Sum_probs=116.0
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHH-------HHHHHhhCCHHHHHHHHhhcCCC---------C----------
Q 043124 53 HLGALDLGREIHLYVMQIGFDIDVYIGSAL-------VDMYAKCGSLDRSLLVFFKLREK---------N---------- 106 (331)
Q Consensus 53 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~---------~---------- 106 (331)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-.+- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4567777777777777664 3345556555 34454444444554444433321 1
Q ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc--Hh
Q 043124 107 -----LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE--VE 179 (331)
Q Consensus 107 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 179 (331)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+... ... .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHH
Confidence 1123345566777777777777777776543 433344445556777788888888887655 211 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC--CC-Cc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSSK--FQ-PN--AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLL 250 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 250 (331)
.+..+..++...|++++|+..|++.. -. |. .........++.+.|+.++|...|+++...+|+ ...+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 55566777778888888888887642 11 32 234555666677888888888888888888887 5554444
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=3.2e-08 Score=70.25 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++++..|++...+..++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444444555555555555555555542 2222 34445555555555555555555555555555555555555555555
Q ss_pred hcCCchHHHHHHHHHH
Q 043124 256 EVSRWAEVTKIRVAMK 271 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~ 271 (331)
+.|++++|...+++..
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555554
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=1e-07 Score=78.06 Aligned_cols=164 Identities=10% Similarity=-0.035 Sum_probs=117.1
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhhCCHHHHHHHHhhcCC-----CC---
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-----VYIGSALVDMYAKCGSLDRSLLVFFKLRE-----KN--- 106 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~--- 106 (331)
....+...+..+...|++++|.+.+++.++...... ...+..+...+...|++++|...|++..+ .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345666677788888999999999888877532211 12344566777888899999998876542 11
Q ss_pred -hhhHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCC--cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC---CCCC
Q 043124 107 -LFCWNSIIEGLAVHGFAHEALAMFDRMIY---EN-VEP--NGVTFISVLSACTHAGLVEEGRRRFLSMTCGY---SITP 176 (331)
Q Consensus 107 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 176 (331)
..+|+.+...|...|++++|...|++..+ .. ..+ ...++..+...|...|++++|...+++..+.. +...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 34788889999999999999999988873 21 111 12577788889999999999999998876321 1111
Q ss_pred -cHhHHHHHHHHHHHcCCHHHH-HHHHHh
Q 043124 177 -EVEHYGCMVDLLSKAGLLEDA-LELIRS 203 (331)
Q Consensus 177 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~ 203 (331)
-..+|..+..+|.+.|++++| ...+++
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 156788888899999999988 665654
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=3.6e-08 Score=69.63 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHH
Q 043124 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLG 218 (331)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 218 (331)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34555566666777777777777777766332 334566777777777778888887777653 2233 4667777788
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRW 260 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 260 (331)
.+...|++++|...++++++..|++...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888899999999999999998888888888888888888775
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=6.4e-08 Score=67.70 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCcHHHHHHHHHH
Q 043124 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK-F-QPNAVIWGALLGG 219 (331)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-~p~~~~~~~l~~~ 219 (331)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.- . ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3455556666666666777766666666322 2345566666666777777777777666531 2 2345667777777
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
+...|++++|...++++....|++...+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888887777777766665543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=2.3e-08 Score=81.45 Aligned_cols=189 Identities=11% Similarity=-0.062 Sum_probs=111.4
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEG 116 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 116 (331)
+...+..+...+...|++++|+..++++++.. +.+...+..+..+|.+.|++++|...+++..+. +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566667777777777777777777777764 336677777777888888888888887776642 45677778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHH
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPNG-VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLE 195 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (331)
+...|++++|...|++..+.+ |+. ..+...+....+... +... .... ......+......+... ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~---~~~~-~~~~-~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAK---KKRW-NSIE-ERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHH---HHHH-HHHH-HTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHH---HHHH-HHHH-HHHHhhhHHHHHHHHHH--HHHHHH
Confidence 888888888888888776642 211 011111111111111 1111 1111 12223444444433322 367888
Q ss_pred HHHHHHHh-CCCCCcHHHHHHHHHH-Hhhc-CCHHHHHHHHHHHHh
Q 043124 196 DALELIRS-SKFQPNAVIWGALLGG-CKLH-RNLEIAHIAVNELMI 238 (331)
Q Consensus 196 ~a~~~~~~-~~~~p~~~~~~~l~~~-~~~~-~~~~~a~~~~~~~~~ 238 (331)
+|++.+++ ....|+......-+.. +... +.+++|.++|+++.+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888765 3456654433333333 4443 567888888888765
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=5.6e-08 Score=68.98 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=82.3
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHH
Q 043124 140 PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALL 217 (331)
Q Consensus 140 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~ 217 (331)
.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++. ...| +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 345556666666777777777777777766221 234566666677777777777777777653 2223 466777777
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 043124 218 GGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSR 259 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 259 (331)
.++...|++++|.+.++++++..|.+...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788888888888888888888888888887778877776653
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.86 E-value=2.8e-08 Score=73.81 Aligned_cols=106 Identities=13% Similarity=-0.040 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHH
Q 043124 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLG 218 (331)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 218 (331)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++. ...| +...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566677777788888888888888877332 335667777777788888888888877753 2334 3667777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNSGYCT 248 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 248 (331)
++...|++++|...+++++++.|++...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 778888888888888888887777776543
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=3.8e-08 Score=69.49 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
...+..+...+.+.|++++|+..|++. ...| +...+..+..++...|++++|...++++++.+|++...|..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888763 2334 46777888888888888888888888888888888888888888888
Q ss_pred hcCCchHHHHHHHHHHhc
Q 043124 256 EVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~~~ 273 (331)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 889988888888888754
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.2e-07 Score=66.24 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043124 6 IISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDM 85 (331)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (331)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555555555555555555442 2234445555555555555555555555555442 2233444444444
Q ss_pred HHhhCCHHHHHHHHhh
Q 043124 86 YAKCGSLDRSLLVFFK 101 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~ 101 (331)
+...|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 4444444444444443
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=9.3e-08 Score=67.44 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=100.4
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|++...+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788888999999999999999874 2334 6778888888999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 255 AEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 255 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
...|++++|...+++..+. .|+++..+..++.++..+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---------------------------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---------------------------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---------------------------STTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc---------------------------CccchHHHHHHHHHHHHHhc
Confidence 9999999999999998753 36667788888888876654
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=1.2e-08 Score=76.80 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=54.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH-HHHcCCH--H
Q 043124 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL-LSKAGLL--E 195 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 195 (331)
..|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455555555555555442 3344455555555555555555555555554221 1233344444444 4444544 5
Q ss_pred HHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 043124 196 DALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN 243 (331)
Q Consensus 196 ~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 243 (331)
+|...+++. ...| +...+..+...+...|++++|...++++++..|++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 555444432 1222 23344444444445555555555555555544444
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=4.7e-08 Score=71.44 Aligned_cols=123 Identities=8% Similarity=-0.011 Sum_probs=98.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISP-DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA 87 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (331)
...+...+...+.+.+++. +.| +...+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|.
T Consensus 12 ~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4556666666655555532 233 44577788889999999999999999999985 457889999999999
Q ss_pred hhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Q 043124 88 KCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV 143 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 143 (331)
..|++++|...|++..+ .++..|..+..+|...|++++|...|++..+.. |+..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999998763 367789999999999999999999999999864 5543
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=6.4e-06 Score=68.22 Aligned_cols=238 Identities=8% Similarity=-0.032 Sum_probs=160.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYA 87 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (331)
++.+-....+.+..++|+++++++...+. -+..+|+.-..++...| ++++++.+++.++... +-+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444555666789999999998753 35667777777777777 5999999999999875 447778888877777
Q ss_pred hh-C-CHHHHHHHHhhcCCCC---hhhHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 88 KC-G-SLDRSLLVFFKLREKN---LFCWNSIIEGLAVHGFAH--------EALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 88 ~~-g-~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
+. + ++++++++++.+.+.+ ..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 77 7 8899999999988754 456666555555555555 8999999998875 4577778777777777
Q ss_pred cCc-------HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCH--------------------HHHHHHHHhCC-C
Q 043124 155 AGL-------VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL--------------------EDALELIRSSK-F 206 (331)
Q Consensus 155 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~-~ 206 (331)
.+. +++++..+++..... +-|...|+-+-..+.+.|+. ....++..++. .
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred ccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 665 678888888877332 44677777766666666654 22222222221 1
Q ss_pred -------CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHH-hcCCCCcchHHHHH
Q 043124 207 -------QPNAVIWGALLGGCKLHRNLEIAHIAVNELM-ILEPNNSGYCTLLL 251 (331)
Q Consensus 207 -------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 251 (331)
.++......++..|...|+.++|.++++.+. +.+|-...+|...+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2455566666667777777777777777775 35666555554443
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1.5e-07 Score=69.59 Aligned_cols=124 Identities=7% Similarity=-0.057 Sum_probs=61.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhC
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVH 120 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 120 (331)
+..+...+...|+++.|...+++..+.. +.+..++..+..++...|++++|...|++..+ .+..+|..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 4444444445555555555555554442 22344445555555555555555555544332 2334555555566666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCcHHHHHHHHHhhh
Q 043124 121 GFAHEALAMFDRMIYENVEPNGVTFI--SVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 121 ~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
|++++|...|++..+.. +.+...+. ..+..+...|++++|...+....
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666665543 22333332 22223455566666666665543
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=7.2e-08 Score=69.72 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYA 255 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 255 (331)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++..+|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556667777888888888887763 2334 56667777777888888888888888888888888888888888888
Q ss_pred hcCCchHHHHHHHHHHhc
Q 043124 256 EVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~~~ 273 (331)
..|++++|...+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877653
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=6.6e-08 Score=80.84 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC-------------cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043124 142 GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP-------------EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQ 207 (331)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~ 207 (331)
...+..+...+.+.|++++|...|++..+...-.+ ....|..+..+|.+.|++++|+..+++. ...
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445555555566666666666665552211000 1467888889999999999999998863 334
Q ss_pred C-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 043124 208 P-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEV-TKIRVAMK 271 (331)
Q Consensus 208 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 271 (331)
| +...+..+..++...|++++|...|++++++.|++...+..+..++.+.|++++| ..+++.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5788888999999999999999999999999999999999999999999999988 45666664
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=2.5e-07 Score=63.94 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 043124 179 EHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE 256 (331)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 256 (331)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|++...+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555666666666655542 1222 345555555556666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHH
Q 043124 257 VSRWAEVTKIRVAMK 271 (331)
Q Consensus 257 ~g~~~~a~~~~~~m~ 271 (331)
.|++++|...+++..
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666666654
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.7e-07 Score=75.07 Aligned_cols=182 Identities=9% Similarity=-0.070 Sum_probs=137.5
Q ss_pred hhCCHHHHHHHHhhcCCC---ChhhHHHH-------HHHHHhCCCHHHHHHHHHHHHHcCCCCc----------------
Q 043124 88 KCGSLDRSLLVFFKLREK---NLFCWNSI-------IEGLAVHGFAHEALAMFDRMIYENVEPN---------------- 141 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~~---~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 141 (331)
..++.+.|.+.|.+..+- ....|..+ ...+.+.++..+++..+..-.+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccc
Confidence 579999999999988753 44678777 46666666666776666665541 111
Q ss_pred ------HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCc----HH
Q 043124 142 ------GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN----AV 211 (331)
Q Consensus 142 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~----~~ 211 (331)
..........+...|++++|..+|+.+. .. .|+....-.+...+.+.+++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~-~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP-VA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC-CT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2233446677889999999999999998 32 45433555666788999999999999987653342 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMILE--PN-NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.+..+..++...|++++|++.|++..... |. ..........++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67778888999999999999999998632 55 44566788999999999999999999998754
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=1.1e-07 Score=73.07 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=9.0
Q ss_pred HHHHHHhccCcHHHHHHHHHh
Q 043124 147 SVLSACTHAGLVEEGRRRFLS 167 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~ 167 (331)
.+...+...|++++|...+++
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 333444444444444444444
No 145
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.78 E-value=5.2e-07 Score=82.00 Aligned_cols=216 Identities=8% Similarity=-0.078 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH-HHHhhcCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSL-LVFFKLRE--K-NLFCWNSIIEGLAVHGFAHEALAMFDRMI 134 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 134 (331)
.+..+|++++.. ++-...+|-..+..+.+.|+.++|. ++|++... | +...|...+...-+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456678888776 4557888888899899999999996 99987764 2 45567788888899999999999999998
Q ss_pred HcC---------CCCc------------HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc-C
Q 043124 135 YEN---------VEPN------------GVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA-G 192 (331)
Q Consensus 135 ~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 192 (331)
+.. ..|+ ...|...+....+.|+.+.|..+|....+..+ ......|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 641 0131 33577777888888999999999999984311 12233444333333344 4
Q ss_pred CHHHHHHHHHhC-C-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHH
Q 043124 193 LLEDALELIRSS-K-FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN---NSGYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 193 ~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
+.+.|..+|+.. . +.-+...+...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 599999999863 2 2234566677787788899999999999999997763 4566777888888899999999999
Q ss_pred HHHHhcCCC
Q 043124 268 VAMKELGIE 276 (331)
Q Consensus 268 ~~m~~~~~~ 276 (331)
+++.+.-..
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 999876543
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=6.6e-08 Score=74.23 Aligned_cols=151 Identities=15% Similarity=-0.046 Sum_probs=84.6
Q ss_pred hhCCHHHHHH---HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHhccCcHH
Q 043124 88 KCGSLDRSLL---VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVE-PNGVTFISVLSACTHAGLVE 159 (331)
Q Consensus 88 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~ 159 (331)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +.+ .....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 443322223456666666667777777777777666541 111 22345556666777777777
Q ss_pred HHHHHHHhhhhc---CCCCC--cHhHHHHHHHHHHHcCCHHHHHHHHHhCC------CCCc--HHHHHHHHHHHhhcCCH
Q 043124 160 EGRRRFLSMTCG---YSITP--EVEHYGCMVDLLSKAGLLEDALELIRSSK------FQPN--AVIWGALLGGCKLHRNL 226 (331)
Q Consensus 160 ~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~p~--~~~~~~l~~~~~~~~~~ 226 (331)
+|...+++.... .+-.+ ....+..+...+...|++++|...+++.- -.+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777765532 11111 13445666667777777777777665421 0111 22345555566677777
Q ss_pred HHHHHHHHHHHh
Q 043124 227 EIAHIAVNELMI 238 (331)
Q Consensus 227 ~~a~~~~~~~~~ 238 (331)
++|.+.++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=3.3e-08 Score=72.14 Aligned_cols=115 Identities=9% Similarity=-0.070 Sum_probs=80.9
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 043124 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQ 207 (331)
Q Consensus 129 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~ 207 (331)
.|+++.+.. +.+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|+..|++. ...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444432 2234555666777778888888888888877332 335667777778888888888888888763 233
Q ss_pred C-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 208 P-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 208 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
| +...+..+..++...|++++|...++++++..|+++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 4 45667777788888888888888888888888876655
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=8e-09 Score=79.42 Aligned_cols=171 Identities=11% Similarity=-0.057 Sum_probs=97.8
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV 158 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 158 (331)
.+.+....|+++++.+.++.-.+. ....+..+...+...|++++|...|++..+.. |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 334444455566555555433221 23456666666777777777777777766542 110000000 00
Q ss_pred HHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 159 EEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
+.-. .. .....+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|...++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01356777788888888898888888763 2334 5778888888899999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHH-HHHHHHHhc
Q 043124 237 MILEPNNSGYCTLLLNMYAEVSRWAEVT-KIRVAMKEL 273 (331)
Q Consensus 237 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 273 (331)
++..|++...+..+..++...++.+++. ..++.|...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999898999998888887776 566666543
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.7e-07 Score=66.73 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN----AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLN 252 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 252 (331)
...+..+...+...|++++|...+++. ...|+ ...+..+..++...|++++|...+++++...|++...+..+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444444555555555555555442 23343 3444444445555555555555555555555555555555555
Q ss_pred HHHhcCCchHHHHHHHHHH
Q 043124 253 MYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 253 ~~~~~g~~~~a~~~~~~m~ 271 (331)
++...|++++|...+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555554
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1.2e-07 Score=71.24 Aligned_cols=112 Identities=11% Similarity=0.016 Sum_probs=48.4
Q ss_pred hCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCcH--HHHH
Q 043124 89 CGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA-CTHAGLV--EEGR 162 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~--~~a~ 162 (331)
.|++++|...+++..+ .+...|..+...+...|++++|...|++..+.+ +.+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3444444444443321 233445555555555555555555555544432 2233344444444 3444444 5555
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
..|+...+.. +.+...+..+...|...|++++|...+++
T Consensus 102 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 102 AMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5555544221 12234444444455555555555555443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=3.3e-08 Score=75.94 Aligned_cols=140 Identities=11% Similarity=-0.040 Sum_probs=98.0
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-----------------HHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-----------------AVIW 213 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-----------------~~~~ 213 (331)
....|+++.+...|+.-.... ......+..+...+...|++++|+..|++. ...|+ ...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334455555555554333110 112344555666677777777777777652 11121 2677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEE
Q 043124 214 GALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQ 293 (331)
Q Consensus 214 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 293 (331)
..+..++...|++++|...+++++...|++...+..++.+|...|++++|...|++..+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------------------- 151 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-------------------- 151 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------------------
Confidence 888888999999999999999999999999999999999999999999999999998743
Q ss_pred eecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 294 FAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 294 ~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
+|++..++..+..++..+++
T Consensus 152 -------~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 152 -------NPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp -------STTCHHHHHHHHHHHHHHHH
T ss_pred -------CCCcHHHHHHHHHHHHHHHH
Confidence 46777888888888877655
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.71 E-value=2.6e-07 Score=77.21 Aligned_cols=129 Identities=9% Similarity=-0.116 Sum_probs=94.6
Q ss_pred CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHHHhhCCHHHHHHHHhhcCC-
Q 043124 40 DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID--------------VYIGSALVDMYAKCGSLDRSLLVFFKLRE- 104 (331)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 104 (331)
+...+..+...+...|++++|+..|+++++...... ..+|..+..+|.+.|++++|+..|++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777777777777777777777777642211 46778888888888888888888877653
Q ss_pred --CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH-HHHHHhhh
Q 043124 105 --KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG-RRRFLSMT 169 (331)
Q Consensus 105 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~ 169 (331)
.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.++| ...|..|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888888888888764 44566777777888888888877 44555554
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=1.9e-07 Score=63.86 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN--NSGYCTLLLNM 253 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 253 (331)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++++..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888763 2223 5667777888888899999999999999988888 88888888999
Q ss_pred HHhc-CCchHHHHHHHHHHhcCC
Q 043124 254 YAEV-SRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 254 ~~~~-g~~~~a~~~~~~m~~~~~ 275 (331)
+... |++++|.+.+++..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876543
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.70 E-value=1.4e-05 Score=65.93 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=145.5
Q ss_pred hhHHHHHHHH---HhCCChh-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC----------chHHHHHHHHHHHhCC
Q 043124 7 ISWTTMITCY---SQNKQFR-EALDAFNEMKNSGISPDQVTMATVLSACAHLGA----------LDLGREIHLYVMQIGF 72 (331)
Q Consensus 7 ~~~~~li~~~---~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~ 72 (331)
..|..+...+ .+.|.+. +|+.+++.+...+. -+..+|+.--.++...+. +++++.+++.++...
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~- 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-
Confidence 3455444433 3456655 78888888887642 244445543333333232 567788888888775
Q ss_pred CCchhHHHHHHHHHHhhC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHH
Q 043124 73 DIDVYIGSALVDMYAKCG--SLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGF-AHEALAMFDRMIYENVEPNGVTFI 146 (331)
Q Consensus 73 ~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~ 146 (331)
+-+..+|+.-..++.+.| .+++++++++.+.+ .|..+|+.-.-.+...|. ++++++.+.++.+.+ +-|...|+
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~ 183 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWH 183 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 446777777777777777 47888888887764 355677777777777777 588888888888775 44666666
Q ss_pred HHHHHHhcc--------------CcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHc-----------CCHHHHHHHH
Q 043124 147 SVLSACTHA--------------GLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKA-----------GLLEDALELI 201 (331)
Q Consensus 147 ~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 201 (331)
.....+.+. +.+++++..+....... +-|...|+-+-..+.+. +.++++++.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 554444433 45677777777777332 44566665444444333 3455666666
Q ss_pred HhC-CCCCcH-HHHHHHHH---HHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 202 RSS-KFQPNA-VIWGALLG---GCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 202 ~~~-~~~p~~-~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
+++ ...||. ..+..++. +.-..+..+++...+.++++++|.....|..+...+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 553 244542 12111111 112345666777777777777777666666554443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=4.2e-07 Score=64.30 Aligned_cols=99 Identities=8% Similarity=-0.034 Sum_probs=48.4
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCC----------hhhHHHH
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN----------LFCWNSI 113 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~l 113 (331)
+..+...+.+.|++++|+..|+++++.. +.+..+|..+..+|.+.|++++|++.|++..+.+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444442 2233444444444444444444444444333210 1245556
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTF 145 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 145 (331)
..++...|++++|++.|++.++. .|+....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66666777777777777776654 3454443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=7.9e-07 Score=61.28 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHh
Q 043124 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCK 221 (331)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 221 (331)
.+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34445555555555666655555555221 223445555555566666666666665542 1223 3555666666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 222 LHRNLEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
..|++++|.+.++++.+..|++...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777766655544443
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=3.7e-06 Score=69.62 Aligned_cols=219 Identities=13% Similarity=0.040 Sum_probs=155.9
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC-CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhC-C-CH
Q 043124 50 ACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCG-SLDRSLLVFFKLREK---NLFCWNSIIEGLAVH-G-FA 123 (331)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~-~-~~ 123 (331)
.....+..++|+++++.++..+ +-+..+|+.-..++...| .+++++++++.+... +..+|+.-...+.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3345556678999999999986 446778888888888888 599999999988754 456777777777766 6 89
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHH--------HHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCC--
Q 043124 124 HEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVE--------EGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGL-- 193 (331)
Q Consensus 124 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 193 (331)
+++++.++++.+.. +-+...++.-...+.+.|.++ +++..++++.+.. +-+...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccc
Confidence 99999999999875 456777776555555555555 8999999988443 4567788887777777776
Q ss_pred -----HHHHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCH--------------------HHHHHHHHHHHhcC------
Q 043124 194 -----LEDALELIRS-SKFQP-NAVIWGALLGGCKLHRNL--------------------EIAHIAVNELMILE------ 240 (331)
Q Consensus 194 -----~~~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------ 240 (331)
++++++.+++ +...| |...|+.+-..+.+.|+. ........++....
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6788888775 34455 566676665556555543 23333333333322
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 241 PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 241 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+.++.+...|+..|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45566678899999999999999999999864
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=4e-07 Score=65.03 Aligned_cols=98 Identities=13% Similarity=-0.002 Sum_probs=74.5
Q ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 043124 176 PEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 253 (331)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++++..|++...+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34566777777777888888887777753 2333 466777777778888888888888888888888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHhc
Q 043124 254 YAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 254 ~~~~g~~~~a~~~~~~m~~~ 273 (331)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888887754
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.66 E-value=2.4e-07 Score=68.52 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCC
Q 043124 210 AVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMER 289 (331)
Q Consensus 210 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 289 (331)
...|..+..++...|++++|...++++++++|++...|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4567777778888899999999999999888988888888899999999999999988887743
Q ss_pred EEEEeecCCCCCCCch-HHHHHHHHHHHHHHhc
Q 043124 290 KVYQFAASDKSHPASD-EIYSSLSKLDEQLKLA 321 (331)
Q Consensus 290 ~~~~~~~~~~~~p~~~-~~~~~l~~l~~~~~~~ 321 (331)
+|+++ .+...+..+...+++.
T Consensus 127 -----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 -----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 46666 5666777776666543
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=4.2e-07 Score=65.64 Aligned_cols=94 Identities=12% Similarity=-0.102 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 043124 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLA 118 (331)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 118 (331)
..+..+...+...|++++|+..|+.+.+.. +.+...|..+..+|.+.|++++|...|++..+ .+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345555666667777777777777777664 34566666777777777777777777776542 24556677777777
Q ss_pred hCCCHHHHHHHHHHHHHc
Q 043124 119 VHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~~ 136 (331)
..|++++|.+.|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777654
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=5.9e-07 Score=63.26 Aligned_cols=108 Identities=7% Similarity=-0.054 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHh
Q 043124 144 TFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCK 221 (331)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 221 (331)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++. ...| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34445555555666666666666555221 223455555666666666666666666542 2233 3556666666677
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHH
Q 043124 222 LHRNLEIAHIAVNELMILE------PNNSGYCTLLLNM 253 (331)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 253 (331)
..|++++|...++++++.. |.+..+...+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7777777777777777766 6655554444433
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.6e-06 Score=74.95 Aligned_cols=191 Identities=9% Similarity=-0.060 Sum_probs=99.6
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCc----------------hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----C
Q 043124 48 LSACAHLGALDLGREIHLYVMQIGFDID----------------VYIGSALVDMYAKCGSLDRSLLVFFKLREK-----N 106 (331)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 106 (331)
...+.+.|++++|++.|..+++...... ...+..++..|...|++++|.+.+..+.+. +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455677888888888887777532211 013555666677777777777666655421 1
Q ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC-C--
Q 043124 107 ----LFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVEPN-GVTFISVLSACTHAGLVEEGRRRFLSMTCGYS-I-- 174 (331)
Q Consensus 107 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-- 174 (331)
..+.+.+...+...|+++.|..++++.... +..+. ..++..+...+...|++++|..+++....... .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 112333334444556666666666655432 22222 33445556666666666666666665442111 0
Q ss_pred CC-cHhHHHHHHHHHHHcCCHHHHHHHHHhCC-----C-CC-c--HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 175 TP-EVEHYGCMVDLLSKAGLLEDALELIRSSK-----F-QP-N--AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 175 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.+ ....+..++..|...|++++|...+++.. . .| . ...+..+...+...+++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 13455555666666666666666554321 1 11 1 12333334445555666666666655554
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-06 Score=63.40 Aligned_cols=111 Identities=10% Similarity=-0.047 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHH
Q 043124 141 NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWG 214 (331)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~ 214 (331)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 455566666667777777777777777662 2343 566667777777788888887777653 2334 466777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 215 ALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 215 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
.+..++...|++++|...++++++..|++...+..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777888888888888888888888888777766555544
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=2e-07 Score=65.95 Aligned_cols=93 Identities=6% Similarity=-0.055 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHH
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSG-------YCTLL 250 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 250 (331)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.+++++++.|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666666666666666666652 2334 3555666666677777777777777777766554432 34556
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 043124 251 LNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 251 ~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+.++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666667777777777776654
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=2.1e-07 Score=65.23 Aligned_cols=94 Identities=15% Similarity=-0.001 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 257 (331)
.+..+...+.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++++++|++...+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3555677888999999999999874 3445 5778888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhc
Q 043124 258 SRWAEVTKIRVAMKEL 273 (331)
Q Consensus 258 g~~~~a~~~~~~m~~~ 273 (331)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=9.3e-07 Score=63.06 Aligned_cols=96 Identities=7% Similarity=-0.030 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++++++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44455555555555555555555555555442 2234445555555555555555555555555543 223444444444
Q ss_pred HHHhhCCHHHHHHHHhhc
Q 043124 85 MYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~ 102 (331)
++...|++++|...|++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 444444444444444433
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=9.8e-07 Score=65.34 Aligned_cols=92 Identities=10% Similarity=-0.041 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH
Q 043124 109 CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL 188 (331)
Q Consensus 109 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (331)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 44455555555555555555555555442 2244444555555555555555555555554221 22244455555555
Q ss_pred HHcCCHHHHHHHHHh
Q 043124 189 SKAGLLEDALELIRS 203 (331)
Q Consensus 189 ~~~~~~~~a~~~~~~ 203 (331)
...|++++|...|++
T Consensus 90 ~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 90 FDMADYKGAKEAYEK 104 (164)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHH
Confidence 555555555555543
No 168
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=2.8e-05 Score=68.32 Aligned_cols=89 Identities=6% Similarity=-0.111 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCC--cHHHHHHHHHH-HhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 043124 181 YGCMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGG-CKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~p--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 257 (331)
|...+..+.+.+..+.|..+|++.. .| +...|...... +...++.+.|..+|+.+++..|+++..+...+....+.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 4444444455667777777777652 22 22233222222 12233677788888887776676665555566666666
Q ss_pred CCchHHHHHHHHH
Q 043124 258 SRWAEVTKIRVAM 270 (331)
Q Consensus 258 g~~~~a~~~~~~m 270 (331)
|+.+.|..+|+++
T Consensus 368 ~~~~~aR~l~er~ 380 (493)
T 2uy1_A 368 GDEENARALFKRL 380 (493)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHH
Confidence 7777777666664
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=3.4e-07 Score=62.61 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCC--chhHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDI--DVYIGSAL 82 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 82 (331)
+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34445555555555555555555555555442 2234444455555555555555555555555442 22 23344444
Q ss_pred HHHHHhh-CCHHHHHHHHhhc
Q 043124 83 VDMYAKC-GSLDRSLLVFFKL 102 (331)
Q Consensus 83 ~~~~~~~-g~~~~a~~~~~~~ 102 (331)
..++... |++++|.+.+++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 4444444 4444444444443
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.3e-06 Score=72.19 Aligned_cols=192 Identities=13% Similarity=0.025 Sum_probs=140.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHccCCchHHHHHHHHHHHhC-CCCc
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQ----------------VTMATVLSACAHLGALDLGREIHLYVMQIG-FDID 75 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 75 (331)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999886432211 237788999999999999999998886641 1112
Q ss_pred h----hHHHHHHHHHHhhCCHHHHHHHHhhcCC-----C----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC
Q 043124 76 V----YIGSALVDMYAKCGSLDRSLLVFFKLRE-----K----NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE----NV 138 (331)
Q Consensus 76 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~ 138 (331)
. .+.+.+...+...|+.++|.++++.... . -..++..++..+...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444555567899999998876642 1 1347888999999999999999999987653 11
Q ss_pred CC-cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC---CCCCc--HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 139 EP-NGVTFISVLSACTHAGLVEEGRRRFLSMTCGY---SITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 139 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
.+ ...++..++..|...|++++|..++++..... ..++. ...+..+...+...|++++|...+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 24578888999999999999999999876321 11221 345666677778899999999888764
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=8.4e-07 Score=62.44 Aligned_cols=96 Identities=7% Similarity=-0.034 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQ-PNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN-------SGYCT 248 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 248 (331)
...+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...+++++...|.+ ...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888763 223 356778888888999999999999999999977765 67788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 249 LLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 249 ~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.++.++...|++++|...+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999998753
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=2.3e-05 Score=64.61 Aligned_cols=228 Identities=14% Similarity=0.043 Sum_probs=158.7
Q ss_pred hhHHHHHHH---HHccCCch-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC----------HHHHHHHHhhcCC---
Q 043124 42 VTMATVLSA---CAHLGALD-LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS----------LDRSLLVFFKLRE--- 104 (331)
Q Consensus 42 ~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~--- 104 (331)
..|..+... ..+.|.++ +|+...+.++..+ +-+..+|+.--.++...|. +++++.+++.+..
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P 105 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 105 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC
Confidence 345444443 34556655 8899999999875 3355666665555544443 6788888887764
Q ss_pred CChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-HHHHHHHHHhhhhcCCCCCcHhHH
Q 043124 105 KNLFCWNSIIEGLAVHG--FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL-VEEGRRRFLSMTCGYSITPEVEHY 181 (331)
Q Consensus 105 ~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 181 (331)
.+..+|+.-...+...+ .++++++.++++.+.. +-|...|+.-...+...|. +++++..++.+.+.. +-+...|
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW 182 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSW 182 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHH
Confidence 36677888777787877 4899999999999985 5577777776666777787 689999999998543 4567777
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhc-----------CCHHHHHHHHH
Q 043124 182 GCMVDLLSKA--------------GLLEDALELIRSS-KFQP-NAVIWGALLGGCKLH-----------RNLEIAHIAVN 234 (331)
Q Consensus 182 ~~l~~~~~~~--------------~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~ 234 (331)
+.....+.+. +.++++++.+.+. ...| |...|+-+-..+... +.++++.+.++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 7776666554 4577888888763 3455 456665444444433 45889999999
Q ss_pred HHHhcCCCCcchHHHHHHH---HHhcCCchHHHHHHHHHHhc
Q 043124 235 ELMILEPNNSGYCTLLLNM---YAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 235 ~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~ 273 (331)
++++..|++...+..++.. ....|..+++...+.++.+.
T Consensus 263 elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 263 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 9999999986555444332 23467788888899888753
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=4.7e-07 Score=63.42 Aligned_cols=92 Identities=11% Similarity=-0.074 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK 88 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (331)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..++++++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344445555555555555555555542 2244455555555555555555555555555543 2234445555555555
Q ss_pred hCCHHHHHHHHhhc
Q 043124 89 CGSLDRSLLVFFKL 102 (331)
Q Consensus 89 ~g~~~~a~~~~~~~ 102 (331)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555544
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.53 E-value=1.1e-06 Score=61.96 Aligned_cols=89 Identities=19% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCc-H---HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 043124 184 MVDLLSKAGLLEDALELIRSS-KFQPN-A---VIWGALLGGCKLHRNLEIAHIAVNELMILEPNN---SGYCTLLLNMYA 255 (331)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 255 (331)
+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...+++++...|++ +..+..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555555555555542 11222 1 244445555556666666666666666655555 444555566666
Q ss_pred hcCCchHHHHHHHHHHh
Q 043124 256 EVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 256 ~~g~~~~a~~~~~~m~~ 272 (331)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665553
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.52 E-value=7.6e-07 Score=77.69 Aligned_cols=148 Identities=10% Similarity=-0.008 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc-------------HhHHHHHHHHHH
Q 043124 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE-------------VEHYGCMVDLLS 189 (331)
Q Consensus 123 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~ 189 (331)
+++|...|+...+.. +-....+..+...+.+.|++++|+..|++..+...-.++ ...|..+..+|.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333321 123456667778888888888888888888742211111 467777888888
Q ss_pred HcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH-H
Q 043124 190 KAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTK-I 266 (331)
Q Consensus 190 ~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~ 266 (331)
+.|++++|+..+++. ...| +...+..+..++...|++++|...|++++++.|++..++..+..++.+.|+++++.. .
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888763 2334 577778888888888888888888888888888888888888888888888877653 4
Q ss_pred HHHHH
Q 043124 267 RVAMK 271 (331)
Q Consensus 267 ~~~m~ 271 (331)
++.|.
T Consensus 409 ~~~~f 413 (457)
T 1kt0_A 409 YANMF 413 (457)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 55543
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.52 E-value=1.3e-06 Score=76.28 Aligned_cols=129 Identities=6% Similarity=-0.130 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---------------HHHHHHHHHHHhccCcHHHHHHHHHhhhhc
Q 043124 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPN---------------GVTFISVLSACTHAGLVEEGRRRFLSMTCG 171 (331)
Q Consensus 107 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (331)
...|..+...+.+.|++++|...|++.++.. +.+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4578889999999999999999999998863 222 578888999999999999999999999843
Q ss_pred CCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHhhcCCHHHHHH-HHHHHHh
Q 043124 172 YSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPN-AVIWGALLGGCKLHRNLEIAHI-AVNELMI 238 (331)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 238 (331)
. +.+...|..+..+|...|++++|+..|++. .+.|+ ...+..+..++...++.+++.+ .+++|..
T Consensus 347 ~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 345788889999999999999999999873 45664 5667777777888888887764 4444443
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=7.2e-07 Score=64.80 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMIL-------EPNNSGYC----TLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
.|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777777788888888888888888887 88888888 88888888899999998888888754
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=3.9e-07 Score=79.90 Aligned_cols=118 Identities=7% Similarity=-0.073 Sum_probs=83.4
Q ss_pred HHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHH
Q 043124 150 SACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLE 227 (331)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 227 (331)
..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777776332 234667777777777888888887777753 2344 4667778888888889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 043124 228 IAHIAVNELMILEPNNSGYCTLLLNM--YAEVSRWAEVTKIRVA 269 (331)
Q Consensus 228 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 269 (331)
+|.+.++++++..|++...+..+..+ +.+.|++++|...+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999888888888887777777 7888888888888873
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=2.1e-06 Score=60.32 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=43.5
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---C-------hhhHHHH
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---N-------LFCWNSI 113 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-------~~~~~~l 113 (331)
+..+...+...|+++.|...++++.+.. +.+..++..+..++...|++++|...+++..+. + ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444432 223334444444444444444444444433211 1 3345556
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
..++...|++++|.+.|++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666666654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=7.3e-07 Score=65.30 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGIS-PD----QVTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666666665443100 01 12445555555666666666666655543
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=1.8e-06 Score=72.97 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=76.5
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY 254 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 254 (331)
+...|..+..+|.+.|++++|++.+++ +...| +...+..+..++...|++++|...+++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888999999999999999986 34555 4778888889999999999999999999999999998988888888
Q ss_pred HhcCCchHHHH
Q 043124 255 AEVSRWAEVTK 265 (331)
Q Consensus 255 ~~~g~~~~a~~ 265 (331)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=2.4e-06 Score=72.25 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-----------------CCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 043124 180 HYGCMVDLLSKAGLLEDALELIRSSK-----------------FQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEP 241 (331)
Q Consensus 180 ~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 241 (331)
.+..+...+.+.|++++|++.+++.- ..| +...|..+..++.+.|++++|...++++++..|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 45666677778888888877776531 233 356788888889999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 043124 242 NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKL 320 (331)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 320 (331)
++..++..+..+|...|++++|...+++..+ ..|++..++..+..++..+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---------------------------l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE---------------------------IAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------------------hCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874 347778888888888876654
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=6.9e-06 Score=57.72 Aligned_cols=97 Identities=13% Similarity=-0.024 Sum_probs=53.7
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcH---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHH
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEV---EHYGCMVDLLSKAGLLEDALELIRSS-KFQPN----AVIWGALLGGC 220 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~ 220 (331)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...+++. ...|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344455555555555555555221 1111 34444555566666666666665542 12222 34455566667
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcchH
Q 043124 221 KLHRNLEIAHIAVNELMILEPNNSGYC 247 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~p~~~~~~ 247 (331)
...|++++|...+++++...|++....
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 777777777777777777777655443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=1.9e-06 Score=63.02 Aligned_cols=128 Identities=13% Similarity=-0.019 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhhCCHHHHHHHHhhcCCC-----C----h
Q 043124 42 VTMATVLSACAHLGALDLGREIHLYVMQIGFD-ID----VYIGSALVDMYAKCGSLDRSLLVFFKLREK-----N----L 107 (331)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~ 107 (331)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45667777778888888888888777654211 01 135666777777778887777777665421 1 2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYE----NVEP-NGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
.++..+...+...|++++|.+.+++..+. +.++ ....+..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35666666777777777777777666532 1111 12344555556666666666666666554
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=4.2e-07 Score=63.21 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
..+..+..++...|++++|...++++++..|++...+..++.++...|++++|...+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555555555555544
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=2.7e-06 Score=74.40 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=98.4
Q ss_pred HHhccCcHHHHHHHHHhhhhcC--CCC---C-cHhHHHHHHHHHHHcCCHHHHHHHHHhC--------C-CCCc-HHHHH
Q 043124 151 ACTHAGLVEEGRRRFLSMTCGY--SIT---P-EVEHYGCMVDLLSKAGLLEDALELIRSS--------K-FQPN-AVIWG 214 (331)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~-~~p~-~~~~~ 214 (331)
.+...|++++|+.++++..+.. -+. | ...+++.|..+|...|++++|..++++. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998866421 111 2 3678999999999999999999987752 3 4555 56788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 043124 215 ALLGGCKLHRNLEIAHIAVNELMI-----LEPNNSGY---CTLLLNMYAEVSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 215 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 274 (331)
.|...|...|++++|+.+++++++ .+|+++.+ ...+..++...|.+++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 56766544 4567888889999999999999998743
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=7.4e-06 Score=55.78 Aligned_cols=64 Identities=6% Similarity=-0.090 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 209 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
+...+..+...+...|++++|...++++++..|++...+..++.++.+.|++++|...+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455666667777777888888888887777777777777777778888888888877777763
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.3e-06 Score=72.92 Aligned_cols=146 Identities=9% Similarity=-0.074 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (331)
..+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 35667777777888888888888887765 344331 23344444443322 1 1367778888
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCchHHH
Q 043124 188 LSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMY-AEVSRWAEVT 264 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 264 (331)
|.+.|++++|+..+++. ...| +...+..+..++...|++++|...|++++++.|++..++..|..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988863 3444 5778888888999999999999999999999998888877777663 4456677788
Q ss_pred HHHHHHHhc
Q 043124 265 KIRVAMKEL 273 (331)
Q Consensus 265 ~~~~~m~~~ 273 (331)
.+|++|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888887644
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=5.3e-06 Score=69.31 Aligned_cols=91 Identities=10% Similarity=-0.052 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-Hh
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA-CT 153 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 153 (331)
+|..+..+|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|...|++..+.. +-+...+..+... ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 455555666666666666666555432 244556666666666666666666666655432 1122233333222 12
Q ss_pred ccCcHHHHHHHHHhhh
Q 043124 154 HAGLVEEGRRRFLSMT 169 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~ 169 (331)
..+..+.+...|..+.
T Consensus 311 ~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 311 EKALYQKQKEMYKGIF 326 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344555555555555
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=1.5e-06 Score=60.32 Aligned_cols=91 Identities=10% Similarity=-0.011 Sum_probs=58.4
Q ss_pred cCcHHHHHHHHHhhhhcCC--CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 043124 155 AGLVEEGRRRFLSMTCGYS--ITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
.|++++|+..|++.. ..+ -+.+...+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 466677777777776 221 1223556667777777777777777777753 2334 3666677777778888888888
Q ss_pred HHHHHHHhcCCCCcch
Q 043124 231 IAVNELMILEPNNSGY 246 (331)
Q Consensus 231 ~~~~~~~~~~p~~~~~ 246 (331)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888877776554
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.28 E-value=7.1e-06 Score=53.62 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
..+..+...+...|++++|...++++++..|++...+..+..++.+.|++++|...+++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555555555555555554
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=4e-07 Score=79.86 Aligned_cols=122 Identities=8% Similarity=-0.014 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYA 87 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (331)
.|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..++++++.. +.+..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445556778899999999999998864 3467888899999999999999999999998874 446778888999999
Q ss_pred hhCCHHHHHHHHhhcCC--C-ChhhHHHHHHH--HHhCCCHHHHHHHHH
Q 043124 88 KCGSLDRSLLVFFKLRE--K-NLFCWNSIIEG--LAVHGFAHEALAMFD 131 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~--~~~~~~~~~a~~~~~ 131 (331)
..|++++|.+.|++..+ | +...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999987753 2 44566666666 778889999999888
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=4.7e-06 Score=61.46 Aligned_cols=67 Identities=18% Similarity=0.077 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++++.|++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 457777888888888888888888763 3344 477888888888999999999999999999998876
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=0.00012 Score=65.56 Aligned_cols=184 Identities=11% Similarity=-0.039 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC----------HHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC--
Q 043124 57 LDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGS----------LDRSLLVFFKLREK---NLFCWNSIIEGLAVHG-- 121 (331)
Q Consensus 57 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~-- 121 (331)
.++|++.+++++..+ +-+..+|+.-..++...|+ ++++++.++.+.+. +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 345566666666654 2244555555555555444 45555555544421 3334444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC-cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHH
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAG-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALEL 200 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 200 (331)
+++++++.++++.+.+ +-+...|+.-...+.+.| .++++.+.++++.+.. +-+...|+.....+.+.+...+
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~---- 196 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPD---- 196 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCC----
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccc----
Confidence 3455555555555443 234444444433444444 4444444444444211 2233334333333222111100
Q ss_pred HHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 043124 201 IRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAE 262 (331)
Q Consensus 201 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 262 (331)
.+ +.. -...+.++++.+.+++++..+|++..+|..+...+.+.++.++
T Consensus 197 ---~~--~~~---------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 ---SG--PQG---------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ---SS--SCC---------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ---cc--ccc---------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 00 000 0012557999999999999999999999999999988888555
No 195
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.22 E-value=0.00066 Score=59.65 Aligned_cols=203 Identities=10% Similarity=-0.048 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHH-HHHHhh
Q 043124 23 REALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRS-LLVFFK 101 (331)
Q Consensus 23 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 101 (331)
+.+..+|+++.... +.+...|...+..+...|+++.|..+++.+.+. +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 45677888887753 456777777777778889999999999998887 334333332 2222111111 112221
Q ss_pred cC--C-------C---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCcHHHHHHHHHhh
Q 043124 102 LR--E-------K---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTH-AGLVEEGRRRFLSM 168 (331)
Q Consensus 102 ~~--~-------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~ 168 (331)
.. + + ....|...+....+.+..+.|..+|++. .. .+.+...|...+..-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 0 0 1234666666666677788888888877 32 12233344322221112 23578888888887
Q ss_pred hhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 169 TCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.+..+ -++..+...++.....|+.+.|..+|+... .....|...+..-...|+.+.+..+++++..
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 74432 234455556676777788888888888763 2456666666666667888888777777765
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=6.4e-06 Score=72.01 Aligned_cols=120 Identities=5% Similarity=-0.110 Sum_probs=83.5
Q ss_pred HHccCCchHHHHHHHHHHHhC---CC----CchhHHHHHHHHHHhhCCHHHHHHHHhhcCC-------C---C-hhhHHH
Q 043124 51 CAHLGALDLGREIHLYVMQIG---FD----IDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-------K---N-LFCWNS 112 (331)
Q Consensus 51 ~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~---~-~~~~~~ 112 (331)
+...|++++|+.++++.++.. +. ....+++.|..+|...|++++|+.++++..+ + + ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 457788888888888876641 11 1356788888888888888888888776542 1 1 246888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhh
Q 043124 113 IIEGLAVHGFAHEALAMFDRMIYE-----N--VEPNGVTFISVLSACTHAGLVEEGRRRFLSMTC 170 (331)
Q Consensus 113 li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 170 (331)
|...|...|++++|+.++++..+. | .+....+.+.+-.++...+.+++|+.+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876642 3 222234445555666777788888888887764
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=9.4e-07 Score=60.42 Aligned_cols=93 Identities=15% Similarity=-0.041 Sum_probs=72.8
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNN------SGYCT 248 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 248 (331)
+...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|...++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888889999998888863 2334 57778888888999999999999999999999987 66667
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 043124 249 LLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 249 ~l~~~~~~~g~~~~a~~~~~~ 269 (331)
.+..++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 777777777777776655544
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.19 E-value=1e-05 Score=54.33 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 209 NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 209 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
+...+..+..++...|++++|...++++++.+|++...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888888999999999999999999999999999999999999999999999999988754
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=3.1e-05 Score=56.20 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSGISP------DQ-----VTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555666667777777766666542110 11 1444455555555555555555554444
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=5e-05 Score=49.41 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=61.0
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45667778888888888888888888887764 3356677778888888888888888888887764 335566666666
Q ss_pred HHHhh
Q 043124 85 MYAKC 89 (331)
Q Consensus 85 ~~~~~ 89 (331)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.08 E-value=6.4e-05 Score=53.71 Aligned_cols=110 Identities=8% Similarity=-0.074 Sum_probs=77.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hCCHHHH
Q 043124 20 KQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAK----CGSLDRS 95 (331)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 95 (331)
+++++|+..|++..+.| .|+.. |...|...+.++.|.+.|++..+.| +...+..|..+|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46778888888888776 23333 6666666677777888888877765 45666777777776 6777777
Q ss_pred HHHHhhcCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 043124 96 LLVFFKLRE-KNLFCWNSIIEGLAV----HGFAHEALAMFDRMIYEN 137 (331)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 137 (331)
.+.|++..+ .++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776654 355667777777776 677777777777777665
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=1.5e-05 Score=54.91 Aligned_cols=77 Identities=12% Similarity=-0.014 Sum_probs=53.8
Q ss_pred HHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 043124 197 ALELIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKEL 273 (331)
Q Consensus 197 a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 273 (331)
|++.+++ +...| +...+..+...+...|++++|...++++++..|++...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444443 23334 45666677777777778888888888877777777777777777788888888888777776643
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00028 Score=63.06 Aligned_cols=166 Identities=10% Similarity=-0.048 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc----------HHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC
Q 043124 123 AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL----------VEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG 192 (331)
Q Consensus 123 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (331)
.++|++.++++...+ +-+...|+.--..+...|+ ++++...++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence 467788888888764 3345556554445555555 888999999888443 446777877777777888
Q ss_pred --CHHHHHHHHHhCC-CCC-cHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc----------
Q 043124 193 --LLEDALELIRSSK-FQP-NAVIWGALLGGCKLHR-NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV---------- 257 (331)
Q Consensus 193 --~~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------- 257 (331)
++++++++++++- ..| +...|+.-...+...| .++++.+.++++++.+|.+..+|.....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6699999888752 333 5677777666777778 899999999999999999999999888887764
Q ss_pred ----CCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHH
Q 043124 258 ----SRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQL 318 (331)
Q Consensus 258 ----g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 318 (331)
+.++++.+.+++... .+|++..++..++.++...
T Consensus 202 ~~~~~~~~eel~~~~~ai~---------------------------~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFF---------------------------TDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHH---------------------------HCSSCSHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHHHHh---------------------------hCCCCccHHHHHHHHHhcC
Confidence 456778888877763 3477777887777776543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.90 E-value=6.2e-05 Score=53.79 Aligned_cols=50 Identities=20% Similarity=0.118 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhcC
Q 043124 223 HRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAE----VSRWAEVTKIRVAMKELG 274 (331)
Q Consensus 223 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 274 (331)
.+++++|.++++++.+. .++..+..|..+|.. .+++++|...+++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 44455555555554443 223344445555554 455555555555554443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=2.1e-05 Score=56.93 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=54.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcH----------HHHHHHHHhhhhcCCCCC-cHhHHHHHHHH
Q 043124 119 VHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLV----------EEGRRRFLSMTCGYSITP-EVEHYGCMVDL 187 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 187 (331)
+.+.+++|.+.+++..+.+ +.+...+..+..++...+++ ++|+..|++..+- .| ....|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence 3445566666666665553 34555555555555555543 2444444444411 22 23334444444
Q ss_pred HHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 188 LSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
|...|.+ .|+.. ...|++++|.+.|+++++++|++..+
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 4333322 22211 01268999999999999999986543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=1e-05 Score=58.59 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHhhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-
Q 043124 192 GLLEDALELIRSS-KFQP-NAVIWGALLGGCKLHRN----------LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS- 258 (331)
Q Consensus 192 ~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 258 (331)
+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|+...+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3445555555432 2233 34444444444444433 679999999999999999999999999999875
Q ss_pred ----------CchHHHHHHHHHHhc
Q 043124 259 ----------RWAEVTKIRVAMKEL 273 (331)
Q Consensus 259 ----------~~~~a~~~~~~m~~~ 273 (331)
++++|...|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999999864
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.83 E-value=6.8e-05 Score=64.54 Aligned_cols=116 Identities=10% Similarity=0.061 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC--------C-CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCC---Ccch
Q 043124 185 VDLLSKAGLLEDALELIRSS--------K-FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMI-----LEPN---NSGY 246 (331)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~ 246 (331)
+..+.+.|++++|+.++++. + ..|+ ..+++.|..+|...|++++|+.+++++++ ..|+ ....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999988752 1 2233 46788888899999999999999999986 3344 4455
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 043124 247 CTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLK 319 (331)
Q Consensus 247 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 319 (331)
++.|+..|...|++++|..++++..+.-.. .-...||...+++..|......++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999988643110 012456666677777777777665
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.82 E-value=9.6e-05 Score=49.06 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-cHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 186 DLLSKAGLLEDALELIRSS-KFQP-NAV-IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
..+...|++++|+..+++. ...| +.. .+..+..++...|++++|...++++++..|++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444555555555555442 1223 233 44444444555555555555555555555554444
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=0.00017 Score=49.38 Aligned_cols=78 Identities=9% Similarity=-0.055 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 24 EALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 24 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
.|+..|++..+.. +.+...+..+..++...|++++|+..++++++.. +.+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666543 3355566666666667777777777777666654 3345556666666666666666666665543
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.80 E-value=0.00035 Score=45.88 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=57.0
Q ss_pred CcHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 043124 208 PNAVIWGALLGGCKLHRN---LEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGI 275 (331)
Q Consensus 208 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 275 (331)
.+...+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777654444 79999999999999999999999999999999999999999999987654
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=9.8e-05 Score=49.34 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..+..+..++...|++++|+..|++..+.+ +.+...|..+..++...|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444445555555555555444432 2223344444444445555555555444443
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.74 E-value=0.00016 Score=51.85 Aligned_cols=89 Identities=9% Similarity=0.059 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCcc
Q 043124 208 PNAVIWGALLGGCKLHR---NLEIAHIAVNELMILE-P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPGS 282 (331)
Q Consensus 208 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 282 (331)
++..+...+..++++.+ +++++..++++..+.+ | +....+..|..+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 45555555555555555 4446666666666655 4 3344555566666666666666666666652
Q ss_pred ceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCc
Q 043124 283 SWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASY 323 (331)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~ 323 (331)
.+|++..+......+-+.+.+.|+
T Consensus 100 -----------------ieP~n~QA~~Lk~~ie~~~~kdgl 123 (152)
T 1pc2_A 100 -----------------TEPQNNQAKELERLIDKAMKKDGL 123 (152)
T ss_dssp -----------------HCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------cCCCCHHHHHHHHHHHHHHHHhhH
Confidence 345555666655555555555553
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00011 Score=63.13 Aligned_cols=83 Identities=13% Similarity=0.005 Sum_probs=64.7
Q ss_pred HcCCHHHHHHHHHhC--------C-CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCC---CcchHHHHH
Q 043124 190 KAGLLEDALELIRSS--------K-FQPN-AVIWGALLGGCKLHRNLEIAHIAVNELMI-----LEPN---NSGYCTLLL 251 (331)
Q Consensus 190 ~~~~~~~a~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~~~l~ 251 (331)
..|++++|+.++++. + ..|+ ..+++.|..+|...|++++|+.+++++++ .+|+ ....++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888887642 2 3344 46788888899999999999999999986 3444 445578899
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 043124 252 NMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 252 ~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.52 E-value=0.0054 Score=50.93 Aligned_cols=138 Identities=8% Similarity=-0.046 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHH--hCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---C-----cHHHHHHHHHhhhhcC
Q 043124 106 NLFCWNSIIEGLA--VHGF---AHEALAMFDRMIYENVEPNGVTFISVLSACTHA---G-----LVEEGRRRFLSMTCGY 172 (331)
Q Consensus 106 ~~~~~~~li~~~~--~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~-----~~~~a~~~~~~~~~~~ 172 (331)
+..+|...+.+.. ..++ ..+|..+|++.++.. |-....+..+..++... + ........+.......
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 5555655554432 2222 467777777777753 22244444333333210 0 1111111111111011
Q ss_pred CCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc
Q 043124 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSS-KFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNS 244 (331)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 244 (331)
..+.+..+|..+...+...|++++|...+++. ...|+...|..+...+.-.|++++|.+.+++++.++|...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 22445667776666666678888887777753 2456766666666667777888888888888887777744
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.49 E-value=0.00043 Score=59.54 Aligned_cols=93 Identities=12% Similarity=-0.071 Sum_probs=73.2
Q ss_pred ccCcHHHHHHHHHhhhhcC--CCCC----cHhHHHHHHHHHHHcCCHHHHHHHHHhC--------C-CCCc-HHHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGY--SITP----EVEHYGCMVDLLSKAGLLEDALELIRSS--------K-FQPN-AVIWGALL 217 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~-~~p~-~~~~~~l~ 217 (331)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. | ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999998866321 1122 2578999999999999999999988752 3 4565 56789999
Q ss_pred HHHhhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 043124 218 GGCKLHRNLEIAHIAVNELMI-----LEPNNSGY 246 (331)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 246 (331)
..|...|++++|+.+++++++ .+|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 66877655
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.47 E-value=0.0014 Score=56.36 Aligned_cols=99 Identities=14% Similarity=-0.004 Sum_probs=77.9
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCC--CCC----cHhHHHHHHHHHHHcCCHHHHHHHHHhC--------C-CCCc-HH
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYS--ITP----EVEHYGCMVDLLSKAGLLEDALELIRSS--------K-FQPN-AV 211 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~-~~p~-~~ 211 (331)
.+..+.+.|++++|..++++..+... +.| ...+++.+..+|...|++++|+.++++. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 45566788999999999998874221 122 2568899999999999999999988752 2 4555 56
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 043124 212 IWGALLGGCKLHRNLEIAHIAVNELMI-----LEPNNSGY 246 (331)
Q Consensus 212 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 246 (331)
+++.|...|...|++++|+.+++++++ .+|+++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 788899999999999999999999987 66877655
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.38 E-value=0.021 Score=53.34 Aligned_cols=156 Identities=11% Similarity=0.054 Sum_probs=96.6
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 14 TCYSQNKQFREALD-AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 14 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. |. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34456788888876 4422 1 1122336777778888888888776531 11 113445678999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcC
Q 043124 93 DRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGY 172 (331)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 172 (331)
++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+... ..
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~-~~ 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE-TT 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH-Hc
Confidence 99999987774 567899999999999999999999998743 2234444444666655544444433 11
Q ss_pred CCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 043124 173 SITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
| -++.-..+|.+.|++++|++++.+++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 12223334555566666666555544
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.29 E-value=0.005 Score=57.52 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHhhCCHHHHHH-HHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 043124 86 YAKCGSLDRSLL-VFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 86 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 164 (331)
....+++++|.+ ++..+. +......++..+.+.|.++.|+++.+. |. .- .......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHH
Confidence 345667777766 443332 011225566666667777776655421 11 11 2233456777777776
Q ss_pred HHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 043124 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
.+.+. +...|..+...+.+.++++.|.++|.+++
T Consensus 675 ~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 675 LTDES-------AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 55443 44677777777777777777777777665
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.28 E-value=0.021 Score=39.57 Aligned_cols=143 Identities=8% Similarity=0.008 Sum_probs=101.2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHH
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED 196 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (331)
+.-.|..++..++..+.... .+..-+|.+|.-....-+-+-..++++.+-+-+++ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467777777777777654 34555666665555666666666666666533322 24566666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 043124 197 ALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 197 a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 276 (331)
....+-.++ .+...+...+..+...|+-++-.++...++...|.++.+...+..+|.+.|+..+|.+++++.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666665 344556677888899999999999999976655555888888999999999999999999999999876
Q ss_pred CC
Q 043124 277 KR 278 (331)
Q Consensus 277 ~~ 278 (331)
..
T Consensus 158 EA 159 (172)
T 1wy6_A 158 EA 159 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.27 E-value=0.0025 Score=41.93 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCCCCcHh-HHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVE-HYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
....+...|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445566677777777777666321 22344 566666666677777777766665
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.27 E-value=0.0064 Score=50.51 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCcHHHH
Q 043124 139 EPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SKFQPNAVIW 213 (331)
Q Consensus 139 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~p~~~~~ 213 (331)
+.+..+|..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.+++ +.+.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 334455554444444455666666655555522 24444455555555555666666555543 2344554443
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.23 E-value=0.0047 Score=41.37 Aligned_cols=65 Identities=6% Similarity=-0.135 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 208 PNAVIWGALLGGCKLHRNLEIAHIAVNELMILE-------PNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 208 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
.+..-+..+...+...++++.|...++.+++.. +....++..|+.+|.+.|+++.|..++++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345566778888999999999999999998832 33456788999999999999999999999874
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.22 E-value=0.0025 Score=43.91 Aligned_cols=64 Identities=9% Similarity=-0.050 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHhhcCCHHH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 208 PNAVIWGALLGGCKLHRNLEI---AHIAVNELMILE-P-NNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 208 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
|+..+--.+..++++..+... ++.+++...+.+ | ........|..++.+.|++++|.+.++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444445555555544433 555555555543 3 223333445555666666666666666555
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.035 Score=40.78 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHH
Q 043124 85 MYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRR 164 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 164 (331)
.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344566666666665554 3455666666666666666666666666532 22233334445555554444
Q ss_pred HHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 043124 165 FLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
-+....+ | -++.-...+.-.|+++++.+++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4433311 1 13334444556666666666666665
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.00 E-value=0.03 Score=39.28 Aligned_cols=92 Identities=4% Similarity=-0.037 Sum_probs=64.5
Q ss_pred CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCCc
Q 043124 206 FQPNAVIWGALLGGCKLHRN---LEIAHIAVNELMILEPN-NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCPG 281 (331)
Q Consensus 206 ~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 281 (331)
-.|+..+--.+..++++..+ ..++..+++.+....|. .......|..++.+.|++++|.++.+.+.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--------- 105 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--------- 105 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---------
Confidence 35666666666677776664 34677777777776663 344445677888888888888888888773
Q ss_pred cceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCcc
Q 043124 282 SSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYV 324 (331)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~ 324 (331)
..|++..+......+-+.+.+.|++
T Consensus 106 ------------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ------------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 4577777777777777777777653
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.88 E-value=0.0054 Score=48.95 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=67.1
Q ss_pred HHHHHHHHHh-CCCCCc---HHHHHHHHHHHhh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchH
Q 043124 194 LEDALELIRS-SKFQPN---AVIWGALLGGCKL-----HRNLEIAHIAVNELMILEPNN-SGYCTLLLNMYAEV-SRWAE 262 (331)
Q Consensus 194 ~~~a~~~~~~-~~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 262 (331)
...|...+++ +.+.|+ ...|..+...|.. .|+.++|.+.|++++++.|+. ...+....+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3455666665 345666 5677777777877 499999999999999999975 88888899999884 99999
Q ss_pred HHHHHHHHHhcCCCC
Q 043124 263 VTKIRVAMKELGIEK 277 (331)
Q Consensus 263 a~~~~~~m~~~~~~~ 277 (331)
+.+.+++........
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999877663
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.0091 Score=42.73 Aligned_cols=88 Identities=15% Similarity=-0.022 Sum_probs=57.2
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcC---CHHHHHHHHHhCC-CC-C--cHHHHHHHHHHHhhcCCHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAG---LLEDALELIRSSK-FQ-P--NAVIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~a 229 (331)
....+.+.|.+.. ..+ .++..+.-.+..++++.+ +.++++.++++.- .. | ....+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~-~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEK-AAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHH-HTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHH-ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 3445555555554 222 245555555666677766 4556766666531 12 4 244555666678899999999
Q ss_pred HHHHHHHHhcCCCCcch
Q 043124 230 HIAVNELMILEPNNSGY 246 (331)
Q Consensus 230 ~~~~~~~~~~~p~~~~~ 246 (331)
.++++.+++.+|++..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 99999999999987766
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.71 E-value=0.017 Score=38.49 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSSK---------FQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCT 248 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 248 (331)
..-+-.|...+.+.|++..|...|+..- -.+....+..+..++.+.|+++.|...++++++..|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344456666777777777766665310 1234677888888899999999999999999999999876644
Q ss_pred HH
Q 043124 249 LL 250 (331)
Q Consensus 249 ~l 250 (331)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.67 E-value=0.014 Score=38.09 Aligned_cols=68 Identities=4% Similarity=-0.060 Sum_probs=44.5
Q ss_pred CCchhhHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhC
Q 043124 3 ARDIISWTTMITCYSQNKQ---FREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIG 71 (331)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 71 (331)
++|...+..+..++...++ .++|..+|++..+.. +-+......+...+...|++++|+..|+.+++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4455666666666654443 577777777777664 3355666666677777777777777777777654
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.36 E-value=0.06 Score=37.23 Aligned_cols=91 Identities=3% Similarity=-0.049 Sum_probs=61.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCCC
Q 043124 205 KFQPNAVIWGALLGGCKLHRN---LEIAHIAVNELMILEPN-NSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKRCP 280 (331)
Q Consensus 205 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 280 (331)
+-.|+..+--.+..++++..+ ..+++.+++++.+.+|. .......|..++.+.|++++|.+..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--------- 105 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--------- 105 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------
Confidence 334566665566666666654 34677777777776663 34555667778888888888888888776
Q ss_pred ccceEEeCCEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcC
Q 043124 281 GSSWIEMERKVYQFAASDKSHPASDEIYSSLSKLDEQLKLAS 322 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g 322 (331)
+..|++..+......|-+.+.+.|
T Consensus 106 ------------------~~eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 106 ------------------EHERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ------------------TTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hhCCCCHHHHHHHHHHHHHHHhhc
Confidence 345777777777777777766554
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.30 E-value=1.2e-07 Score=80.19 Aligned_cols=241 Identities=12% Similarity=0.113 Sum_probs=146.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMY 86 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (331)
..|+.|.+++...+...+|++.|-+ .-|+..|..++.++.+.|.++.-..++....+.. .+..+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 3477888888888888888765532 2266778889999999999998888886655542 3455567889999
Q ss_pred HhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------CCCcHHHHH
Q 043124 87 AKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYEN--------------------VEPNGVTFI 146 (331)
Q Consensus 87 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~~~~~ 146 (331)
++.+++.+-++++ ..||..-...++.-|...|.++.|.-+|..+.... -.-+..||-
T Consensus 127 Ak~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 127 AKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp HTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 9999877654332 23565556666777777777777766665542211 112445566
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCcHHHHHHHHHHHhhcC
Q 043124 147 SVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS-SK-FQPNAVIWGALLGGCKLHR 224 (331)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~-~~p~~~~~~~l~~~~~~~~ 224 (331)
-+-.+|...+.+.-|...--.+. - .++ ....++..|-..|.+++-+.+++. +| -+.....|+-|.-.|++-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniI-v---had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIV-V---HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHH-C---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhc-c---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 56666666666555544333333 1 111 122344556666777777777764 44 245677777777666655
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 043124 225 NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
++++..+.++-... .-+ . --++++|.+..-|.++.-++..-
T Consensus 277 ~PeKlmEHlklf~s-riN-i---pKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 277 KPQKMREHLELFWS-RVN-I---PKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp CTTHHHHHHTTSSS-SSC-C---TTTHHHHTTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-hcc-H---HHHHHHHHHHhhHHHHHHHHhcc
Confidence 33433333322222 111 1 12677888888888887766643
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.2 Score=36.72 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=90.7
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHH
Q 043124 49 SACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALA 128 (331)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 128 (331)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 4455779999998887654 3677899999999999999999999998875 5556666677788877776
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHH-HHcCCHHHHHHHHHhCC
Q 043124 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLL-SKAGLLEDALELIRSSK 205 (331)
Q Consensus 129 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~ 205 (331)
+-+.....| . ++.....+.-.|+++++.++|.+.. + .|. .-.+ ...|..+.|.++.++++
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~-r---~~e-------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG-S---LPL-------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT-C---HHH-------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC-C---hHH-------HHHHHHHcCcHHHHHHHHHHhC
Confidence 666655554 1 3444455667899999999987765 1 121 1112 23566777888877765
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.82 E-value=0.17 Score=35.93 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043124 90 GSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE 139 (331)
Q Consensus 90 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 139 (331)
++.++|.++|+.+.+. =...|-.....-.+.|+...|.+++.+.+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 5555555555544321 1234444455555666666677776666665533
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.62 E-value=0.11 Score=41.62 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhh-----CCHHHHHHHHhhcCC--C--ChhhHHHHHHHHHhC-CCHHHHHHHHHHHHHcC
Q 043124 76 VYIGSALVDMYAKC-----GSLDRSLLVFFKLRE--K--NLFCWNSIIEGLAVH-GFAHEALAMFDRMIYEN 137 (331)
Q Consensus 76 ~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~ 137 (331)
...|..|...|.+. |+.++|.++|++..+ | +..++......++.. |+.+++.+.+++.++..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 33455555555542 555555555554432 2 244555555555553 55555555555555543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.54 E-value=0.2 Score=34.42 Aligned_cols=89 Identities=16% Similarity=-0.006 Sum_probs=51.8
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHH---HHHHHHhCC-CC-C--cHHHHHHHHHHHhhcCCHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLED---ALELIRSSK-FQ-P--NAVIWGALLGGCKLHRNLEIA 229 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~a 229 (331)
....+.+.|...... + .++..+--.+..++++..+... ++.+++++- .. | .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444455544421 2 2444444445566666655544 556665532 12 3 123344455568888888888
Q ss_pred HHHHHHHHhcCCCCcchH
Q 043124 230 HIAVNELMILEPNNSGYC 247 (331)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~ 247 (331)
.++++.+++..|++..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 888888888888876663
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.088 Score=48.29 Aligned_cols=53 Identities=11% Similarity=-0.106 Sum_probs=49.9
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK 271 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 271 (331)
.|...|+++.|.++.+++....|.+..+|..|..+|...|+++.|+-.++-+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 37789999999999999999999999999999999999999999999999874
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.11 E-value=0.089 Score=44.49 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----hcCCCCC
Q 043124 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMK-----ELGIEKR 278 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~ 278 (331)
...++.++...|+.+++...++.+...+|.+...+..++.++.+.|+..+|++.|++.. +.|+.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34466677889999999999999999999999999999999999999999999998874 3588877
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.08 E-value=0.0072 Score=51.78 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=85.8
Q ss_pred CCCchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 043124 2 PARDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSA 81 (331)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (331)
...|...|..+|....+.|.+++-+..+.-.++..-.| ..=+.|+.+|++.++..+-.+++ ..|+..-...
T Consensus 79 kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~ 149 (624)
T 3lvg_A 79 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQ 149 (624)
T ss_dssp CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHH
Confidence 35677889999999999999999999887666553333 44458999999999987766554 2467666777
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC------------------------CChhhHHHHHHHHHhCCCHHHH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLRE------------------------KNLFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~li~~~~~~~~~~~a 126 (331)
..+-|...|.++.|.-+|..+.. .++.+|-.+-.+|...+.+.-|
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 88888888888888887776652 2566788877777766655433
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.94 E-value=0.59 Score=32.53 Aligned_cols=66 Identities=9% Similarity=0.085 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCC
Q 043124 108 FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSIT 175 (331)
Q Consensus 108 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (331)
...+..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|..++.+.- +.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC-KKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-HhhhH
Confidence 34455666777778878777777775443 36777777777788888888888887777776 44543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.46 E-value=0.3 Score=31.85 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
+.-+..+-++.+...++.|++....+.+++|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 456777888888888889999999999999999999999999999988655433 446776654
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.28 E-value=0.97 Score=32.65 Aligned_cols=61 Identities=5% Similarity=-0.124 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCH-------hhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMKNSG-ISPDQ-------VTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
+-.=++.+...+.++.|+-+.+.+.... ..|+. .++..+..++...|++..|...|+++++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3344667777888888877766654321 12221 2455666777788888888888887654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.06 E-value=1.2 Score=41.93 Aligned_cols=154 Identities=12% Similarity=-0.036 Sum_probs=72.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHH--HHHHHHHHc
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYG--CMVDLLSKA 191 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 191 (331)
...++-.|+.+....++..+.+.. .-+..-+..+.-++...|+.+.+..+.+.+.... .|....-. ++.-+|+..
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTS
T ss_pred hhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCC
Confidence 334455677766667776665532 1112222223333446677777777777766321 22222221 233456677
Q ss_pred CCHHHHHHHHHhCCCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHhcCCc-hHHHHHH
Q 043124 192 GLLEDALELIRSSKFQP--NAVIWGALLGGCKLHRNLEIAHIAVNELMIL-EPNNSGYCTLLLNMYAEVSRW-AEVTKIR 267 (331)
Q Consensus 192 ~~~~~a~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~a~~~~ 267 (331)
|+.....+++..+.-.+ ++.....+.-++...|+.+.+.++++.+... +|. ...-..+..+....|.. .++.+++
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~-VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAH-VRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHH-HHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhccCCCcHHHHHHH
Confidence 77766666666543222 2222222222344455555555555544432 221 22222333333334433 4566666
Q ss_pred HHHH
Q 043124 268 VAMK 271 (331)
Q Consensus 268 ~~m~ 271 (331)
..+.
T Consensus 653 ~~L~ 656 (963)
T 4ady_A 653 DPLT 656 (963)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6664
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=2.2 Score=36.66 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=111.6
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH----HHHHhhC
Q 043124 20 KQFREALDAFNEMKNS-----GISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV----DMYAKCG 90 (331)
Q Consensus 20 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g 90 (331)
|+++.|++.+..+.+. +..-+......++..|...|+++...+.+..+.+..-.. ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6788888877666542 223345567778888889999988877776554432222 12222333 3333333
Q ss_pred CHH--HHHHHHhhcCCC---C-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCc---HHHHHHHHHHHh
Q 043124 91 SLD--RSLLVFFKLREK---N-------LFCWNSIIEGLAVHGFAHEALAMFDRMIYE--NVEPN---GVTFISVLSACT 153 (331)
Q Consensus 91 ~~~--~a~~~~~~~~~~---~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~ 153 (331)
..+ .-..+.+.+..- - ......|...+...|++.+|.+++.++... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 233344433321 1 123456778888899999999999887642 22222 245666778888
Q ss_pred ccCcHHHHHHHHHhhhh---cCCCCCc--HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 043124 154 HAGLVEEGRRRFLSMTC---GYSITPE--VEHYGCMVDLLSKAGLLEDALELIRSS 204 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (331)
..+++..|..+++++.. .....|+ ...+...+..+...+++.+|...|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999988888642 1111222 345566677777888888887765544
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.53 E-value=6 Score=38.65 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=15.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
-.+..+|...|++++|.+.|++..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345566666777777777776553
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.92 E-value=1.6 Score=34.35 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=68.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCc----HhHHHHHHHHHHH
Q 043124 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPE----VEHYGCMVDLLSK 190 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 190 (331)
..+.+.|+.+++++....-++.. |-|...-..++..+|-.|+++.|.+-++...+. .|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34556777788877777766664 556666677777788888888887777776622 333 2233333332
Q ss_pred cCCHHHH-HHHHHh--CC--CCCcHHHHHHHHHH--HhhcCCHHHHHHHHHHHHhcCCCCcc
Q 043124 191 AGLLEDA-LELIRS--SK--FQPNAVIWGALLGG--CKLHRNLEIAHIAVNELMILEPNNSG 245 (331)
Q Consensus 191 ~~~~~~a-~~~~~~--~~--~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 245 (331)
+.. .++|.- .+ +.....-...++.+ ....|+.++|.++-..+.+..|....
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 122321 11 11122233444444 34567888888887777776665443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.87 E-value=0.63 Score=39.26 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 44 MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566666777777777776666653 4466677777777777777777777776554
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.54 E-value=1.4 Score=28.61 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043124 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 133 (331)
....++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+.+--||...|-+|.. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456888888888877653 33333334556788999999999999999999999987754 5788888888888888
Q ss_pred HHcCCCCcHHHHHH
Q 043124 134 IYENVEPNGVTFIS 147 (331)
Q Consensus 134 ~~~~~~p~~~~~~~ 147 (331)
...| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8776 566666654
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.39 E-value=0.87 Score=31.48 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH
Q 043124 122 FAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD 186 (331)
Q Consensus 122 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (331)
|.-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.+.+. ...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 45567777888888889999999999999999999999999999999866543 3556776654
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=92.26 E-value=1.5 Score=28.47 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=65.7
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 043124 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRM 133 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 133 (331)
....++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+.+--||...|-+|.. .+.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3466888888888777653 33333334556788999999999999999999999988754 5678888888888888
Q ss_pred HHcCCCCcHHHHHH
Q 043124 134 IYENVEPNGVTFIS 147 (331)
Q Consensus 134 ~~~~~~p~~~~~~~ 147 (331)
...| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 566666553
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.18 E-value=1.6 Score=28.50 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 21 QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++-++... .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455677778888888888899999889999999999999999888776653 334556766554
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.18 E-value=1.5 Score=40.36 Aligned_cols=122 Identities=11% Similarity=-0.056 Sum_probs=78.4
Q ss_pred HHHHHHHHccCC-chHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhhCC-HHHHHHHHhhc-----------CCCChh-
Q 043124 45 ATVLSACAHLGA-LDLGREIHLYVMQIGFDIDVYI--GSALVDMYAKCGS-LDRSLLVFFKL-----------REKNLF- 108 (331)
Q Consensus 45 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~-~~~a~~~~~~~-----------~~~~~~- 108 (331)
..++..+...++ .+.|..+++++.+.. |...+ ...++..+...++ --+|.+++.+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 455666666666 588999999988874 33332 2233333322221 12233333322 222221
Q ss_pred ---------hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 109 ---------CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 109 ---------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
..+.-...+...|+++-|+++-++.... .|-+-.+|..|..+|...|+++.|+-.++.+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222244567789999999999999887 24557899999999999999999999999873
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.85 E-value=8.7 Score=36.34 Aligned_cols=184 Identities=10% Similarity=0.016 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhhCCHHHHHHH
Q 043124 23 REALDAFNEMKNSGISPDQV--TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALV--DMYAKCGSLDRSLLV 98 (331)
Q Consensus 23 ~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~ 98 (331)
+++.+.+..+....- +... .--.|...+...|+.+....++..+.+.. +..+...+. -++.-.|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 456666666665421 1111 11233444567788887788877766532 223333333 344466888888777
Q ss_pred HhhcCC-CChhh-H---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCC
Q 043124 99 FFKLRE-KNLFC-W---NSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYS 173 (331)
Q Consensus 99 ~~~~~~-~~~~~-~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (331)
.+.+.. .+... | .++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+..
T Consensus 547 i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~- 624 (963)
T 4ady_A 547 ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH- 624 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-
Confidence 777653 33332 2 345567888999888888999888652 2333333333344555677777788887776322
Q ss_pred CCCcHhHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCcHHHH
Q 043124 174 ITPEVEHYGCMVDLLSKAGLL-EDALELIRSSKFQPNAVIW 213 (331)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~p~~~~~ 213 (331)
.|.+..-..+..+....|.. .++++.+..+.-.+|..+-
T Consensus 625 -d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 625 -NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp -CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred -CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 45555555555555555554 5677777766544554443
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.80 E-value=2.5 Score=30.00 Aligned_cols=110 Identities=8% Similarity=-0.024 Sum_probs=69.7
Q ss_pred CCHhhHHHHHHHHHccCCc------hHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHH
Q 043124 39 PDQVTMATVLSACAHLGAL------DLGREIHLYVMQIGFDIDV-YIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWN 111 (331)
Q Consensus 39 p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 111 (331)
.|..+|-..+....+.|++ ++.+++|+++... ++|+. ..|...+..+.+ .
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr----------------------Y 67 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR----------------------F 67 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----------------------H
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----------------------H
Confidence 3556666666666666777 7777888877776 45542 122222222221 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP 176 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (331)
++. ...++.++|.++|+.+++.+-.- ...+......-.+.|+...|.+++.... ..+..|
T Consensus 68 A~~---~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai-G~~~k~ 127 (161)
T 4h7y_A 68 AEL---KAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV-ERGAVP 127 (161)
T ss_dssp HHH---HHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBC
T ss_pred HHH---HHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh-ccCCCc
Confidence 111 12268889999999997764333 6666666677788999999999999988 444333
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.43 E-value=7.8 Score=34.90 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=23.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV 67 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 67 (331)
+..+.+.+++...+..+.. .+.+...-+....+....|+...|......+
T Consensus 79 l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 4455556666655553332 1234444444455555556554444433333
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.37 E-value=1.7 Score=31.40 Aligned_cols=55 Identities=15% Similarity=-0.011 Sum_probs=30.8
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCC-----CCh-------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLRE-----KNL-------FCWNSIIEGLAVHGFAHEALAMFDRMIY 135 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 135 (331)
.-+..+...|.++.|+-+...+.. +++ .++..+..++...|++..|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 335556666666666665554331 221 1445556666666666666666666543
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.85 E-value=6.6 Score=33.05 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCCchHHHHHHHH
Q 043124 44 MATVLSACAHLGALDLGREIHLY 66 (331)
Q Consensus 44 ~~~l~~~~~~~~~~~~a~~~~~~ 66 (331)
...|...|.+.|+.++..+++..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~ 44 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKV 44 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555554443
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.19 E-value=3.4 Score=28.63 Aligned_cols=45 Identities=7% Similarity=-0.040 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 59 LGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
+..+-++.+....+-|++.+..+.+++|.+.+++.-|..+|+.++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444555555555566666666666666666655554
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.97 E-value=4.1 Score=30.50 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 224 RNLEIAHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 224 ~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+....+..+|..|.. ++-..+.+|......+...|++++|..+|+.-.+++-+|.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335566666666655 4455566666677777777777777777777666655554
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.68 E-value=7 Score=38.18 Aligned_cols=191 Identities=6% Similarity=-0.031 Sum_probs=121.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------------
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE-------------------- 139 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------- 139 (331)
..++..+...|..+-+.++..-.. .+......++.++...|++++|.+.|++.-. |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 346666777888888877665554 4555556788899999999999999987521 110
Q ss_pred ---CcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC-c--HhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCcHHH
Q 043124 140 ---PNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP-E--VEHYGCMVDLLSKAGLLEDALELIRSSK-FQPNAVI 212 (331)
Q Consensus 140 ---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 212 (331)
.-..-|..++..+.+.+.++.+.++-....+..+-.+ + ...|..+.+.+...|++++|...+-.++ ..--...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 1123467788888888999988888777663322121 1 2368889999999999999988886553 1112345
Q ss_pred HHHHHHHHhhcCCHH------------HHHHHHHHHH-hc-CCCC-cchHHHHHHHHHhcCCchHHH-HHHHHHHh
Q 043124 213 WGALLGGCKLHRNLE------------IAHIAVNELM-IL-EPNN-SGYCTLLLNMYAEVSRWAEVT-KIRVAMKE 272 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~------------~a~~~~~~~~-~~-~p~~-~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 272 (331)
...|+..++..|..+ +..+++..-. .. .+.+ +.+|..|-.-+...|++..|- -+|+...+
T Consensus 974 Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 566666666555544 3333433222 12 2332 345666666667777777654 45555543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.20 E-value=1.3 Score=34.80 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 188 LSKAGLLEDALELIRS-SKFQP-NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
+.+.|++++|++.... ++-+| |...=..|+..++-.|++++|.+-++-..+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3455555555555442 33333 3333344445555566666666666555555555
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.49 E-value=11 Score=30.91 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHH
Q 043124 8 SWTTMITCYSQNKQFREALDAF 29 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~ 29 (331)
+|-++..-|.+.+++++|++++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL 58 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDIL 58 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHH
Confidence 3445555555666666655544
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.81 E-value=5.3 Score=27.59 Aligned_cols=17 Identities=18% Similarity=-0.097 Sum_probs=7.1
Q ss_pred HHHHHcCCHHHHHHHHH
Q 043124 186 DLLSKAGLLEDALELIR 202 (331)
Q Consensus 186 ~~~~~~~~~~~a~~~~~ 202 (331)
-++.+.|++++|.+..+
T Consensus 86 vg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 33444444444444443
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.06 E-value=12 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHH
Q 043124 106 NLFCWNSIIEGLAVHGFAHEALAMF 130 (331)
Q Consensus 106 ~~~~~~~li~~~~~~~~~~~a~~~~ 130 (331)
++..+..+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4555666666666666666666544
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=85.82 E-value=7.6 Score=27.59 Aligned_cols=50 Identities=10% Similarity=-0.051 Sum_probs=37.2
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 229 AHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 229 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+..+|..+.. ++-..+.+|......+...|++++|..+|+.-.+++-+|.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6677777766 5566677778888888888888888888888777766654
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.61 E-value=3.9 Score=34.92 Aligned_cols=97 Identities=10% Similarity=-0.060 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCcHHHHH-
Q 043124 77 YIGSALVDMYAKCGSLDRSLLVFFKLREK------NLFCWNSIIEGLAVHGFAHEALAMFDRMIYE---NVEPNGVTFI- 146 (331)
Q Consensus 77 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~- 146 (331)
.++..+...|.+.|++++|.+.|.++... -+..+-..+..+...++|..+...++++... +-.|+.....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36778999999999999999999988642 3457888889999999999999999987643 3233332211
Q ss_pred -HHHHHHhccCcHHHHHHHHHhhhhcCC
Q 043124 147 -SVLSACTHAGLVEEGRRRFLSMTCGYS 173 (331)
Q Consensus 147 -~ll~~~~~~~~~~~a~~~~~~~~~~~~ 173 (331)
.-...+...+++..|.+.|-+......
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 122234567899999888888764444
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.59 E-value=15 Score=30.01 Aligned_cols=168 Identities=11% Similarity=0.023 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHH----HHHHHcCCCCcHHHHHHHHHHHh
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMF----DRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +...+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666678888888888875433 23455566665554443 45556678888888777777766
Q ss_pred ccCcHH-HHHHHHHhhhh---cCC--CCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHH
Q 043124 154 HAGLVE-EGRRRFLSMTC---GYS--ITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLE 227 (331)
Q Consensus 154 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 227 (331)
.....+ .=.++.+++.+ +.| ..-++.....+...|.+.+++.+|..-|- .+..+....+..++..+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 554311 11122222221 112 23356666778888999999999988774 3444444666555555444332
Q ss_pred HHHHHHHHHHhcCCCCcchH-HHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 228 IAHIAVNELMILEPNNSGYC-TLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 228 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
|.....| ...+--|.-.++...|..+++.+.+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333333 3445667788899999888777664
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.52 E-value=11 Score=28.17 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=38.3
Q ss_pred cCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHH
Q 043124 54 LGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSII 114 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 114 (331)
.++...+..+|..|...|+... ...|......+...|++.+|.++|+.-.+........|.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3445677777777777766543 345666666777777777777777766555444444443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.45 E-value=18 Score=30.77 Aligned_cols=94 Identities=6% Similarity=-0.149 Sum_probs=69.2
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC-----CChhhHH----
Q 043124 43 TMATVLSACAHLGALDLGREIHLYVMQIG--FDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE-----KNLFCWN---- 111 (331)
Q Consensus 43 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---- 111 (331)
+...+...+.+.|+++.|.+.+.++.... ...-...+-..++.+...+++..+...+.+... ++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56778899999999999999999998753 233456777889999999999999988877642 2322211
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYE 136 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~ 136 (331)
.-+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1223345678999999998887654
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.67 E-value=10 Score=26.57 Aligned_cols=72 Identities=17% Similarity=0.028 Sum_probs=48.9
Q ss_pred CCcHhHHHHHHHHHHHcCCHH---HHHHHHHhCC-CCC--cHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 175 TPEVEHYGCMVDLLSKAGLLE---DALELIRSSK-FQP--NAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
.|+..+--.+..+++++.+.+ +++.+++++- ..| .......|.-++.+.|++++|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 456555555667777766554 4556665431 233 23344456667899999999999999999999998766
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.20 E-value=12 Score=26.99 Aligned_cols=50 Identities=8% Similarity=-0.058 Sum_probs=29.2
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 229 AHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 229 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
+..+|..|.. ++-..+.+|......+...|++.+|..+|+.-.+++-.|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3445555544 4445555666666666666666666666666666555544
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.55 E-value=23 Score=27.46 Aligned_cols=247 Identities=14% Similarity=0.055 Sum_probs=114.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchh--HHHHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQV----TMATVLSACAHLGALDLGREIHLYVMQIGFDIDVY--IGSALV 83 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~ 83 (331)
++.+...++.|+.+....++ +.|..++.. .+ +.+...+..|+.+ +++.+++.|..++.. .-.+.+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L 76 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF 76 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH
Confidence 34556667788877665554 445443322 22 3344455667764 444555666554321 111234
Q ss_pred HHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH------------HHHHH
Q 043124 84 DMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGV------------TFISV 148 (331)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------~~~~l 148 (331)
...+..|+.+-+..+++.-... +...++.+ ...+..|+.+-+ +.+.+.|..++.. .-...
T Consensus 77 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 4556678888777777654332 22223333 334456665543 3444444333211 00123
Q ss_pred HHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCH---HHHHHHHHhCCCCCcH---HHHHHHHHHHhh
Q 043124 149 LSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLL---EDALELIRSSKFQPNA---VIWGALLGGCKL 222 (331)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~p~~---~~~~~l~~~~~~ 222 (331)
+...+..|+.+-...+++....... ..+..-.+.+..+ +..+.. .+..+++-+.+..++. ... +.+...+.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~~ 228 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVE 228 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHHH
Confidence 3445567777666666554221111 1122222333333 334442 5555666555533322 112 23344456
Q ss_pred cCCHHHHHHHHHH-HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 223 HRNLEIAHIAVNE-LMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 223 ~~~~~~a~~~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
.|+.+-+..+++. -......+..-.. -+..-.+.|+.+ +.+.+.+.|..++
T Consensus 229 ~~~~~~v~~Ll~~~g~~~~~~~~~g~t-~l~~A~~~~~~~----i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 229 KKHLGLVQRLLEQEHIEINDTDSDGKT-ALLLAVELKLKK----IAELLCKRGASTD 280 (285)
T ss_dssp TTCHHHHHHHHHSSSCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHHSSCSC
T ss_pred cCCHHHHHHHHhccCCCccccCCCCCc-HHHHHHHcCcHH----HHHHHHHcCCCCC
Confidence 7887776666652 2222211121112 222334456554 4445555677666
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.27 E-value=34 Score=29.30 Aligned_cols=184 Identities=12% Similarity=0.058 Sum_probs=113.6
Q ss_pred CCchHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCC---hhh----HHHHHHHHHhCCC
Q 043124 55 GALDLGREIHLYVMQI-----GFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKN---LFC----WNSIIEGLAVHGF 122 (331)
Q Consensus 55 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~li~~~~~~~~ 122 (331)
|+++.|++.+-.+.+. ....+..+...++..|...|+++...+.+..+.+.. ... -+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888777666543 233356677788999999999999877776554321 112 2223333333333
Q ss_pred HHH--HHHHHHHHHH--cC-CCC---cHHHHHHHHHHHhccCcHHHHHHHHHhhhhc-CCCCCc---HhHHHHHHHHHHH
Q 043124 123 AHE--ALAMFDRMIY--EN-VEP---NGVTFISVLSACTHAGLVEEGRRRFLSMTCG-YSITPE---VEHYGCMVDLLSK 190 (331)
Q Consensus 123 ~~~--a~~~~~~m~~--~~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~l~~~~~~ 190 (331)
.+. -..+.+.... .| +-- .......|...+...|++.+|..++..+... .+.... ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332 2222222111 12 111 1223356778899999999999999997632 332222 4577788899999
Q ss_pred cCCHHHHHHHHHhCC-------CCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 191 AGLLEDALELIRSSK-------FQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 191 ~~~~~~a~~~~~~~~-------~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
.+++.+|..++++.. ..|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999988887642 2233 23345555557788888888888877765
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.47 E-value=33 Score=28.81 Aligned_cols=263 Identities=10% Similarity=0.001 Sum_probs=148.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHcc-CCchHHHHHHHHHHHhCCCCchh----
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNS-GISP---DQVTMATVLSACAHL-GALDLGREIHLYVMQIGFDIDVY---- 77 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~---- 77 (331)
.+...|...|.+.|+.++..+++...... +.-| .......++..+... +..+.-.++..+..+-.-. +..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34567888999999999999998876542 1111 233466777777654 3344444444444432100 112
Q ss_pred --HHHHHHHHHHhhCCHHHHHHHHhhcCC----CC-----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCcHHH
Q 043124 78 --IGSALVDMYAKCGSLDRSLLVFFKLRE----KN-----LFCWNSIIEGLAVHGFAHEALAMFDRMIYE--NVEPNGVT 144 (331)
Q Consensus 78 --~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~ 144 (331)
+-..++..|...|++.+|.+++.++.+ .| ...|-.-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 223688999999999999888877653 22 235677788899999999999999887643 23233333
Q ss_pred HHH--H--HHHHh-ccCcHHHHHHHHHhhhhcCCCCCc-----HhHHHHHHHHHHHcCCHHHHHHHHHh---C-CCCCcH
Q 043124 145 FIS--V--LSACT-HAGLVEEGRRRFLSMTCGYSITPE-----VEHYGCMVDLLSKAGLLEDALELIRS---S-KFQPNA 210 (331)
Q Consensus 145 ~~~--l--l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~---~-~~~p~~ 210 (331)
... . ...+. ..+++..|...|-+..+.+.-.-+ ...|..|... -.++..+...++.. . -..|+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccH
Confidence 221 1 22345 789999998888776533321111 2233332222 22332222222221 0 124555
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHh---------------------------cCCCCcchHHHHHHHHHhcCCchHH
Q 043124 211 VIWGALLGGCKLHRNLEIAHIAVNELMI---------------------------LEPNNSGYCTLLLNMYAEVSRWAEV 263 (331)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------~~p~~~~~~~~l~~~~~~~g~~~~a 263 (331)
..+..++.++ ..+++.....+++.... ..|-.......+...+. . ..+++
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~-l-s~~ev 333 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQ-L-PMPQV 333 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHT-C-CHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHC-c-CHHHH
Confidence 5555555554 45566555444443322 22333333344444432 2 56788
Q ss_pred HHHHHHHHhcCC
Q 043124 264 TKIRVAMKELGI 275 (331)
Q Consensus 264 ~~~~~~m~~~~~ 275 (331)
...+-+|...|.
T Consensus 334 E~~L~~lI~dg~ 345 (394)
T 3txn_A 334 EKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHCCC
Confidence 888888887774
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.23 E-value=21 Score=26.43 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 122 (331)
+..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333444444444443333333333333444444444444444443
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.73 E-value=19 Score=25.57 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCCCh-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Q 043124 94 RSLLVFFKLREKNL-----FCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG 142 (331)
Q Consensus 94 ~a~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 142 (331)
++.++|..|...++ ..|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36667776665533 34677777777788888888888887777766644
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=74.48 E-value=16 Score=28.19 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=44.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 11 TMITCYSQNKQFREALDAFNEMKNS--GISP----DQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
--++.+....+|++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467788888888888888776542 2221 1112222222222222233333333333 22 233444445556
Q ss_pred HHHhhCCHHHHHHHHhhc
Q 043124 85 MYAKCGSLDRSLLVFFKL 102 (331)
Q Consensus 85 ~~~~~g~~~~a~~~~~~~ 102 (331)
.+.+.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 666777777777666543
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=73.03 E-value=18 Score=25.69 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCcH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGF--AHEALAMFDRMIYENVEPNG 142 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 142 (331)
...++.=|...|+.++|...++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45577778888888888888888876522 234444445544322 44566777777766644433
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=72.84 E-value=12 Score=28.41 Aligned_cols=49 Identities=8% Similarity=0.046 Sum_probs=24.7
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC
Q 043124 229 AHIAVNELMI--LEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 229 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 277 (331)
+..+|..|.. ++-..+.+|......+...|++++|..+|+.-.+++-+|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444 334444555555555555555555555555555444443
No 279
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.86 E-value=38 Score=27.38 Aligned_cols=113 Identities=7% Similarity=0.045 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHH----HHHHHHcCCCCcHHHHHHHHHHHh
Q 043124 78 IGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM----FDRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 78 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
.|.++..=|.+.+++++|.+++..- ...+.+.|++..|-++ .+...+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666677778888887765443 2345566776655553 444555678888877777777665
Q ss_pred ccCcHH-HHHHHHHhhhh---cCC--CCCcHhHHHHHHHHHHHcCCHHHHHHHH
Q 043124 154 HAGLVE-EGRRRFLSMTC---GYS--ITPEVEHYGCMVDLLSKAGLLEDALELI 201 (331)
Q Consensus 154 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 201 (331)
.....+ .=.++.+.+.+ +.| ..-++.....+...|.+.|++.+|..-|
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 432111 01122222221 111 1235667777888888888888887755
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.48 E-value=22 Score=24.38 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCcH
Q 043124 79 GSALVDMYAKCGSLDRSLLVFFKLREKNL---FCWNSIIEGLAVHGF--AHEALAMFDRMIYENVEPNG 142 (331)
Q Consensus 79 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 142 (331)
...++.=|...|+.++|...++++..|.- .+...+..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 44567778888888888888888876522 234444445544432 35666777777766644433
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=69.44 E-value=11 Score=28.44 Aligned_cols=82 Identities=11% Similarity=-0.021 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHhCCCCCcHH---HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 043124 191 AGLLEDALELIRSSKFQPNAV---IWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 191 ~~~~~~a~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
.+......+++.+.+..++.. .-.+.+...+..|+.+-+.-+++.-......+..-. .-+....+.|+.+-+..++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHH
Confidence 344444555555544222211 111234444567777766666655322221111111 1333445667766666565
Q ss_pred HHHHhc
Q 043124 268 VAMKEL 273 (331)
Q Consensus 268 ~~m~~~ 273 (331)
+...+.
T Consensus 231 ~~~~~~ 236 (240)
T 3eu9_A 231 EARQAK 236 (240)
T ss_dssp HHC---
T ss_pred Hhhhcc
Confidence 554433
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.44 E-value=33 Score=30.01 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CcH--HHHH-HHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 043124 178 VEHYGCMVDLLSKAGLLEDALELIRSSKFQ----PNA--VIWG-ALLGGCKLHRNLEIAHIAVNELMILEP 241 (331)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----p~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p 241 (331)
...+|.+++.|...+.++.|..+..+..+. ++. ..|. .+.+.....+++.+|.+.+..+.+.-|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 455666666677777777777776654321 111 1121 222335556666666666666665444
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.30 E-value=34 Score=25.01 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGF 122 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 122 (331)
..+.++.+.|..+....+.+.+..++...-...+.++.+.++
T Consensus 64 ~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 64 AAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333344444433222233333333343333344444444333
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.32 E-value=46 Score=29.09 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH--hhH-HHHHHHHHccCCchHHHHHHHHHHHh
Q 043124 7 ISWTTMITCYSQNKQFREALDAFNEMKNSGI-SPDQ--VTM-ATVLSACAHLGALDLGREIHLYVMQI 70 (331)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 70 (331)
..+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+.++.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3456666666666666666666655431000 0111 111 12334444555666666555555443
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=65.13 E-value=33 Score=25.52 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=13.2
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcch
Q 043124 220 CKLHRNLEIAHIAVNELMILEPNNSGY 246 (331)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 246 (331)
|.+.|.+++|.+++++..+..+++...
T Consensus 127 Ciekg~Fk~A~eiLkr~f~~~~~~~~l 153 (211)
T 3bqo_A 127 CMENGNFKEAEEVFERIFGDPNSHMPF 153 (211)
T ss_dssp HHHTTCHHHHHHHHHHHC-----CCTT
T ss_pred HHHccchHHHHHHHHHHhcCCCCchHH
Confidence 566666666666666665544443333
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.53 E-value=40 Score=24.85 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=91.7
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 043124 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 74 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++...+..+ +...+.++.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 455555556666666666544555556666677777777777777777643 3444444443 356666666777777
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
+.++.+. ...+..+. . .++...-...+.++.+.+..+..-.+.+-+ -.++...-...+.++...+. ..+...+
T Consensus 107 ~~~~~~~-~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 107 QIGDERA-VEPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKAL-KDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHCCGGG-HHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HhCcHHH-HHHHHHHH-h---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 7777543 34444444 1 456666666777777777654333333334 36676666667777777766 3344444
Q ss_pred HHHHh
Q 043124 234 NELMI 238 (331)
Q Consensus 234 ~~~~~ 238 (331)
..+..
T Consensus 180 ~~~l~ 184 (211)
T 3ltm_A 180 EKLAE 184 (211)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.42 E-value=26 Score=24.01 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC--chHHHHHHHHHHHhCCCCc
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA--LDLGREIHLYVMQIGFDID 75 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 75 (331)
..+.++.-|...|+.++|...++++..-.. ....+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356788889999999999999988752111 112233334444444322 3456666666666665443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.77 E-value=56 Score=25.60 Aligned_cols=16 Identities=0% Similarity=0.148 Sum_probs=7.9
Q ss_pred hhcCCHHHHHHHHHHH
Q 043124 221 KLHRNLEIAHIAVNEL 236 (331)
Q Consensus 221 ~~~~~~~~a~~~~~~~ 236 (331)
+..|+.+-+.-+++.-
T Consensus 169 ~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 169 IKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHcC
Confidence 3455555555554443
No 289
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=61.12 E-value=16 Score=23.61 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAM 129 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 129 (331)
.+++.+.+.|+- +..-... |.......+.++|.+++..+..++..+|..++.++...|+..-|..+
T Consensus 25 ~vld~L~~~~vl-t~~~~e~-I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIED-IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHH-HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHH-HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 356666666643 2222221 11100114678899999999888888999999999877776665443
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=59.75 E-value=69 Score=25.98 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=33.4
Q ss_pred HHhCCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 043124 201 IRSSKFQPN--AVIWGALLGGCKLHRNLEIAHIAVNELMILEPN 242 (331)
Q Consensus 201 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 242 (331)
|....++|. ..+...-+..+.+.+++..|..+.++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344556664 456677777789999999999999999999886
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.52 E-value=1.3e+02 Score=28.65 Aligned_cols=85 Identities=5% Similarity=-0.198 Sum_probs=53.0
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC-c---------------
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSK--FQP-N--------------- 209 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~p-~--------------- 209 (331)
++..|...|..+-|..+...+. .++..--.+..+|...|++++|.++|++.. +.. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 6677778888877665443333 222222346677889999999999998642 111 0
Q ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 043124 210 -------AVIWGALLGGCKLHRNLEIAHIAVNELMI 238 (331)
Q Consensus 210 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 238 (331)
..-|..++..+-+.+-++.+.++.+.++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11355566666666777777777766665
No 292
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.13 E-value=56 Score=23.83 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=66.9
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHH-HHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVD-LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 230 (331)
+.+-.+++.+.-+-.-+. . ..| -|..|+. .+.-+|.+.+++-.+.... ..+..-|..| +|-+.+++..|.
T Consensus 12 s~kY~dYdt~~fLsa~L~-~--~~~---eY~lL~~I~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~ 82 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLL-P--CKP---EYRMLMSIVLYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAI 82 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CTHHHHHHHHHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHH
T ss_pred HhhcccccHHHHHHHHHc-c--CCh---HHHhhhhhhhhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHH
Confidence 445556666554433333 1 122 2333332 3456788888888887765 2222223222 567888999999
Q ss_pred HHHHHHHh--c---------------CCCCcch-HHHHHHHHHhcCCchHHHHHHHHH
Q 043124 231 IAVNELMI--L---------------EPNNSGY-CTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 231 ~~~~~~~~--~---------------~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
..++.+++ + +|.+..+ |..++..+...|+.++|+..+..-
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 99988884 2 2333344 566778889999999999988653
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.62 E-value=23 Score=25.09 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC--chHHHHHHHHHHHhCCCCc
Q 043124 8 SWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGA--LDLGREIHLYVMQIGFDID 75 (331)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 75 (331)
..+.+|.-|...|+.++|...++++..-. .....+...+..++-+.++ .+.+..++..+.+.++-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35678888888999999999998875211 1112233334444444322 3445566666666554433
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.39 E-value=1.5e+02 Score=28.30 Aligned_cols=128 Identities=13% Similarity=-0.054 Sum_probs=69.9
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHH
Q 043124 82 LVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEG 161 (331)
Q Consensus 82 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 161 (331)
++..+...|..+-|.++..-+.. ++..-..++.+|...|++++|...|++.- .|+..+..... .....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------GGHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------chhhh
Confidence 55666677777777665555544 44444567788888888888888887753 23322111000 00111
Q ss_pred HHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh----CC-CCCc--HHHHHHHHHHHhhcC
Q 043124 162 RRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRS----SK-FQPN--AVIWGALLGGCKLHR 224 (331)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~-~~p~--~~~~~~l~~~~~~~~ 224 (331)
..++.... .......-|..++..+-+.+.++-+.++-+. +. -.++ ...|+.+.++.+..|
T Consensus 884 ~~ll~~~e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11222221 0112234677888888888888888777553 22 1111 235666666655433
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.28 E-value=68 Score=23.93 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=14.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC
Q 043124 14 TCYSQNKQFREALDAFNEMKNSGISP 39 (331)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~p 39 (331)
...++.|+.+....+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33445566666666666555554433
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.37 E-value=54 Score=25.18 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc--CCCC----cHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHH
Q 043124 114 IEGLAVHGFAHEALAMFDRMIYE--NVEP----NGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDL 187 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (331)
+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 34555566666666666554422 1121 11112222333333333334444445553 2 3345555566677
Q ss_pred HHHcCCHHHHHHHHH
Q 043124 188 LSKAGLLEDALELIR 202 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~ 202 (331)
+.+.|+.++|.++|-
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 888888888877763
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.12 E-value=66 Score=23.12 Aligned_cols=78 Identities=8% Similarity=0.023 Sum_probs=50.7
Q ss_pred CCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHH
Q 043124 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115 (331)
Q Consensus 37 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 115 (331)
.+.|+.-....+...-.. +.+..+|..|...|+... ...|......+...|++.+|.++|+.-.+.+......|-.
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 355666555555433223 346778888888876544 4567777788888899999999998776655544444444
Q ss_pred HH
Q 043124 116 GL 117 (331)
Q Consensus 116 ~~ 117 (331)
.+
T Consensus 136 ~~ 137 (164)
T 2wvi_A 136 QH 137 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.37 E-value=86 Score=24.28 Aligned_cols=154 Identities=7% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CCChhhHHHHHHHHHhCCC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcH
Q 043124 104 EKNLFCWNSIIEGLAVHGF-----AHEALAMFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEV 178 (331)
Q Consensus 104 ~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 178 (331)
+++..+-...+.++...+. ...+...+..+.. .++...-...+.++...|+.+ +...+..+.. .++.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~ 173 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNG 173 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCH
Confidence 3444444444444444331 2334444433332 344444445555555555432 3333333331 2333
Q ss_pred hHHHHHHHHHHHcC-CHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 043124 179 EHYGCMVDLLSKAG-LLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEV 257 (331)
Q Consensus 179 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 257 (331)
..-...+.++...+ ....+...+..+-..++...-...+.++...++......+. ..+. +|+ .....+.++.+.
T Consensus 174 ~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~-~~l~-d~~---vr~~a~~aL~~i 248 (280)
T 1oyz_A 174 DVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLC-DELK-KNT---VYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHH-HHHT-SSS---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHH-HHhc-Ccc---HHHHHHHHHHhc
Confidence 33344444444443 12333333333222445554455555555555433222222 2222 122 223345555555
Q ss_pred CCchHHHHHHHHHH
Q 043124 258 SRWAEVTKIRVAMK 271 (331)
Q Consensus 258 g~~~~a~~~~~~m~ 271 (331)
|. ..+...+.++.
T Consensus 249 ~~-~~~~~~L~~~l 261 (280)
T 1oyz_A 249 GD-KTLLPVLDTML 261 (280)
T ss_dssp CC-GGGHHHHHHHH
T ss_pred Cc-hhhhHHHHHHH
Confidence 55 34444444444
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.52 E-value=53 Score=22.83 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=14.9
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 133 MIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 133 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+.+.|..++..-.. ++..+...+..-.|.++++.+.
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~ 48 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALE 48 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHG
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHH
Confidence 33444444433222 3333333333444555555554
No 300
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.56 E-value=80 Score=23.06 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=38.0
Q ss_pred hCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----------------Cc-HHHHHHHHHH
Q 043124 89 CGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVE----------------PN-GVTFISVLSA 151 (331)
Q Consensus 89 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------p~-~~~~~~ll~~ 151 (331)
.|.+.+++-++.....-+..-|..| +|-+.+++..|...++.+....+. .| ...++.+...
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Confidence 4555555555544432222222221 344455566666555555533222 12 2344555556
Q ss_pred HhccCcHHHHHHHHHhh
Q 043124 152 CTHAGLVEEGRRRFLSM 168 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~ 168 (331)
|...|+.++|+..+..-
T Consensus 124 ltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 124 CTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHhhhHhhhh
Confidence 66667777776666543
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.50 E-value=95 Score=23.62 Aligned_cols=78 Identities=8% Similarity=0.063 Sum_probs=54.1
Q ss_pred CCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHH
Q 043124 37 ISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDID-VYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIE 115 (331)
Q Consensus 37 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 115 (331)
.+.|+.-....+. |+. ..+.+..+|..|...|+... ...|......+...|++.+|.++|+.-.+........|..
T Consensus 113 YknD~RyLklWl~-Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 113 YKDDVRYLRIWMQ-YVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp GTTCHHHHHHHHH-HHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred ccCCHHHHHHHHH-HHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 4556655555554 333 23577899999999887654 4567788888999999999999998877655555554444
Q ss_pred HH
Q 043124 116 GL 117 (331)
Q Consensus 116 ~~ 117 (331)
.+
T Consensus 190 ~~ 191 (223)
T 4aez_C 190 KY 191 (223)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.28 E-value=1e+02 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEM 32 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m 32 (331)
..+|.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555566666666666655554
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.95 E-value=1e+02 Score=25.44 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHG--FAHEALAMFDRMIYENVEPNGVTFISVLSACTH 154 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 154 (331)
..++.=|...|+.++|...++++..| ...+...+..++-+.+ ..+.+.+++..+...|+-+.......+.+.+..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ 300 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 300 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Q ss_pred cCcHH
Q 043124 155 AGLVE 159 (331)
Q Consensus 155 ~~~~~ 159 (331)
..+..
T Consensus 301 ldDl~ 305 (358)
T 3eiq_C 301 IPDIN 305 (358)
T ss_dssp HHHHH
T ss_pred ccHhh
No 304
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=45.77 E-value=55 Score=20.66 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHH
Q 043124 60 GREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 126 (331)
...+++.+.+.|+-. ..-+..+.. .....++|..+++.+..++..+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 345666677666542 222222221 246678888888888888888888888888877765444
No 305
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.99 E-value=45 Score=22.71 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=22.7
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 48 LSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 333434444555666666665554444444444445555555543
No 306
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=44.94 E-value=62 Score=21.09 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 187 LLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 187 ~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
.+...|++++|..+.+... .||...|.+|-. .+.|--+++...+.++
T Consensus 48 SLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 4455666666666655554 556555544422 3555555555555333
No 307
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.38 E-value=1e+02 Score=23.50 Aligned_cols=216 Identities=13% Similarity=0.037 Sum_probs=102.1
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCchh---HHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHh
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVY---IGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAV 119 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 119 (331)
+.+...+..|+.+.+..+ ++.|..++.. .-.+.+...+..|+.+-+..+++.-..+ +..-++.+ ...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHH
Confidence 344555677887655444 4555443321 1123455667788888877777764433 22223333 33344
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCC---------cHhHHHHHHHH
Q 043124 120 HGFAHEALAMFDRMIYENVEPNG---VTFISVLSACTHAGLVEEGRRRFLSMTCGYSITP---------EVEHYGCMVDL 187 (331)
Q Consensus 120 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~l~~~ 187 (331)
.|+.+ +++.+.+.|..++. ...+ .+...+..|+.+-...+++.-. ...... +..-. ..+..
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~~~g~-t~L~~ 154 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGA-NVNLRRKTKEDQERLRKGGA-TALMD 154 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTC-CTTCCCCCCHHHHHTTCCCC-CHHHH
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCC-CcccccccHHHHHhhccCCC-cHHHH
Confidence 56554 44444555644432 2222 3444556677665555554422 111110 00011 23344
Q ss_pred HHHcCCHHHHHHHHHhCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc--CCC--CcchHHHHHHHHHhcCCc
Q 043124 188 LSKAGLLEDALELIRSSKFQPN---AVIWGALLGGCKLHRNLEIAHIAVNELMIL--EPN--NSGYCTLLLNMYAEVSRW 260 (331)
Q Consensus 188 ~~~~~~~~~a~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~--~~~~~~~l~~~~~~~g~~ 260 (331)
.+..|+.+-+..+++..+..++ ....+.+..+ +..++.....++++.+.+. +++ +..-. ..+....+.|+.
T Consensus 155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~ 232 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHL 232 (285)
T ss_dssp HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHHHcCCH
Confidence 5667888877777776553332 2223334333 3445533333444444442 222 22222 234445566776
Q ss_pred hHHHHHHHHHHhcCCCCC
Q 043124 261 AEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 261 ~~a~~~~~~m~~~~~~~~ 278 (331)
+-+..+++. .|..++
T Consensus 233 ~~v~~Ll~~---~g~~~~ 247 (285)
T 1wdy_A 233 GLVQRLLEQ---EHIEIN 247 (285)
T ss_dssp HHHHHHHHS---SSCCTT
T ss_pred HHHHHHHhc---cCCCcc
Confidence 544444331 455544
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.80 E-value=75 Score=21.71 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=41.8
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 043124 31 EMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93 (331)
Q Consensus 31 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 93 (331)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 46678888776544 4445555555 67789999999988876666665555667777766543
No 309
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=43.50 E-value=66 Score=21.00 Aligned_cols=87 Identities=14% Similarity=-0.075 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLV 98 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 98 (331)
....++|..+-+.+...+. ...+--+-++.+.+.|++++|..+.+.. ..||...|.+| +-.+.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 3567889888888887653 2222223334567899999998876533 36788877665 45678999999988
Q ss_pred HhhcCCCChhhHHHH
Q 043124 99 FFKLREKNLFCWNSI 113 (331)
Q Consensus 99 ~~~~~~~~~~~~~~l 113 (331)
+.++...+......+
T Consensus 92 L~~la~sg~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQDPRIQTF 106 (116)
T ss_dssp HHHHTTCCCHHHHHH
T ss_pred HHHHHhCCCHHHHHH
Confidence 877776544443333
No 310
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=43.50 E-value=18 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 043124 23 REALDAFNEMKNSGISPDQVTMATVLSAC 51 (331)
Q Consensus 23 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 51 (331)
++|...|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56677777766554344556777666666
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.27 E-value=82 Score=22.02 Aligned_cols=14 Identities=0% Similarity=-0.114 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHc
Q 043124 123 AHEALAMFDRMIYE 136 (331)
Q Consensus 123 ~~~a~~~~~~m~~~ 136 (331)
+-.|.++++.+.+.
T Consensus 42 ~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 42 HLSPEEITHSIRQK 55 (150)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444333
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.80 E-value=60 Score=23.16 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=15.0
Q ss_pred HcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 135 YENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 135 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+.|..++..- ..++..+...+..-.|.++++.+.
T Consensus 26 ~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 26 QGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIK 59 (162)
T ss_dssp HHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHH
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3444444332 223344444444445555555554
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.54 E-value=85 Score=21.95 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=43.1
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 043124 30 NEMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93 (331)
Q Consensus 30 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 93 (331)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456778888776544 4445555555 67789999999988866666665555667777777543
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.49 E-value=83 Score=21.82 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 30 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 456778888776544 34455555566778899999988876555655555566777776654
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.81 E-value=41 Score=23.27 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=33.7
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 043124 34 NSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLD 93 (331)
Q Consensus 34 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 93 (331)
+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 7 ~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 7 PVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp ---CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred CCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344443332 23445555555566677888888777665556555555667777777543
No 316
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.29 E-value=99 Score=22.37 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=86.0
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 043124 74 IDVYIGSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 74 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++...+..+ +...+.++.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444444555555555444444555555666666666677777777654 3344444443 356666666777777
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
+.++.+.... +..+. . .++..+-...+.++.+.+..+..-.+.+-+. .++...-...+.++...|+.+ +...+
T Consensus 102 ~~~~~~~~~~-L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~~-~~~~L 174 (201)
T 3ltj_A 102 QIGDERAVEP-LIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGER-VRAAM 174 (201)
T ss_dssp HHCCGGGHHH-HHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH-HHHHH
T ss_pred HhCcHHHHHH-HHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh-HHHHH
Confidence 7777543333 33343 1 3566666666777777776543333333343 567666666777777776643 44444
Q ss_pred HHHH
Q 043124 234 NELM 237 (331)
Q Consensus 234 ~~~~ 237 (331)
..+.
T Consensus 175 ~~~l 178 (201)
T 3ltj_A 175 EKLA 178 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.67 E-value=64 Score=23.94 Aligned_cols=213 Identities=14% Similarity=0.054 Sum_probs=95.1
Q ss_pred chhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhH---H
Q 043124 5 DIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVT--MATVLSACAHLGALDLGREIHLYVMQIGFDIDVYI---G 79 (331)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 79 (331)
|....+.|.. .++.|+.+....++ +.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -
T Consensus 6 d~~~~~~l~~-A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~ 76 (240)
T 3eu9_A 6 DDYSTWDIVK-ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLN 76 (240)
T ss_dssp SCGGGCCHHH-HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTT
T ss_pred ccccchHHHH-HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcC
Confidence 3333333444 45677776655444 4454433221 11344455666776544 44445554332111 1
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHh
Q 043124 80 SALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNG---VTFISVLSACT 153 (331)
Q Consensus 80 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~ 153 (331)
.+.+...+..|+.+-+..+++.-..+ +...++.+ ...+..|+.+-+ +.+.+.|..++. ...+.+..++.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~----~~Ll~~~~~~~~~~~~g~t~l~~a~~ 151 (240)
T 3eu9_A 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTSIV----AYLIAKGQDVDMMDQNGMTPLMWAAY 151 (240)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHHHH----HHHHhcCCCccccCCCCCcHHHHHHH
Confidence 23445556678888777777653332 22222333 334455666543 344444433321 11222333332
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCc---HHHHHHHHHHHhhcCCHHHHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPN---AVIWGALLGGCKLHRNLEIAH 230 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~ 230 (331)
.+......+++.......... +...-...+...+..|+.+-+.-+++. +..++ .... +.+....+.|+.+-+.
T Consensus 152 -~~~~~~~~~~L~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~-t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 152 -RTHSVDPTRLLLTFNVSVNLG-DKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGE-SALDLAKQRKNVWMIN 227 (240)
T ss_dssp -HCCSSTTHHHHHHTTCCTTCC-CTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSC-BHHHHHHHTTCHHHHH
T ss_pred -hCChHHHHHHHHhcCCCcchh-hccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCC-CHHHHHHHcCcHHHHH
Confidence 233233333333322111111 110111234455677887766666654 32322 1111 2334445677777665
Q ss_pred HHHHH
Q 043124 231 IAVNE 235 (331)
Q Consensus 231 ~~~~~ 235 (331)
-+++.
T Consensus 228 ~L~~~ 232 (240)
T 3eu9_A 228 HLQEA 232 (240)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 318
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.22 E-value=1.5e+02 Score=24.02 Aligned_cols=220 Identities=12% Similarity=0.010 Sum_probs=102.4
Q ss_pred CCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhhCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 043124 39 PDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYI--GSALVDMYAKCGSLDRSLLVFFKLREKNLFCWNSIIEG 116 (331)
Q Consensus 39 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 116 (331)
.|..-++.|.. .+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.-+++.-...+...-...+..
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 34445544444 34556665444443 4444433211 11234445566777777776665544333111223334
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcH--------------------HHHHHHHHHHhccC--cHHHHHHHHHhhhhcCCC
Q 043124 117 LAVHGFAHEALAMFDRMIYENVEPNG--------------------VTFISVLSACTHAG--LVEEGRRRFLSMTCGYSI 174 (331)
Q Consensus 117 ~~~~~~~~~a~~~~~~m~~~~~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 174 (331)
.+..|+.+-+..+++.....|..++. ...+ .+...+..| +.+-+..+++.-. ...
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~~ga-~~~- 167 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILVQLGA-SPT- 167 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHHHHTC-CTT-
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHHHcCC-CCc-
Confidence 45667777776666665444443332 1112 233344556 5555555554421 111
Q ss_pred CCcHhHHHHHHHHHHHcCCHHHHHHHHHhCC------C-CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcchH
Q 043124 175 TPEVEHYGCMVDLLSKAGLLEDALELIRSSK------F-QPNAVIWGALLGGCKLHRNLEIAHIAVNELMILEPNNSGYC 247 (331)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 247 (331)
..+..-.+. +...+..|+.+-+..+++.-. + ..+..-.+.| ...+..|+.+-+.-+++.-...+..+..-.
T Consensus 168 ~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 168 AKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp CCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred ccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 111112222 334457788777777776421 1 1122222223 334567777766655553322222222222
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 043124 248 TLLLNMYAEVSRWAEVTKIRVA 269 (331)
Q Consensus 248 ~~l~~~~~~~g~~~~a~~~~~~ 269 (331)
.. +..-.+.|+.+-+..+++.
T Consensus 246 tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 246 VP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CH-HHHHHHTCCHHHHHHHHHH
T ss_pred CH-HHHHHHhChHHHHHHHHHc
Confidence 22 3334456777766666665
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.19 E-value=89 Score=21.68 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=39.6
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 30 NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 30 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 445667888776543 3344444555 668899999988876555665555556777776654
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.76 E-value=1.1e+02 Score=21.96 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHHHHHCCCCC--CHhhHHHHHH-H-----HHccCCchHHHHHHHHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISP--DQVTMATVLS-A-----CAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 69 (331)
.|++-+|-++|+..-.....+ ....|..||. + ..+.|+.+.|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666665443333 3344555555 2 1345666666666665544
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.71 E-value=67 Score=19.42 Aligned_cols=62 Identities=10% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 30 NEMKNSGISPDQVTMATVLSACAHLG-ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 30 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
+.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 446677887776554 4455565554 5667888998888776555666666667777776643
No 322
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.52 E-value=2.3e+02 Score=25.49 Aligned_cols=218 Identities=12% Similarity=-0.017 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHH---HHhC-----------CCCc
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYV---MQIG-----------FDID 75 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~-----------~~~~ 75 (331)
.....+....|+..+|......+-..| ...+..+..++..+.+.|..... .++..| ...| ++++
T Consensus 106 c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~-~~~~R~~~al~~~~~~~a~~l~~~l~~~ 183 (618)
T 1qsa_A 106 CNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPL-AYLERIRLAMKAGNTGLVTVLAGQMPAD 183 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHhCCHH
Confidence 335566677787777777666665554 33455667777777766655332 122222 2222 1111
Q ss_pred hhH-HHHHHHHHHhhCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH----H
Q 043124 76 VYI-GSALVDMYAKCGSLDRSLLVFFKLREKNLF---CWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI----S 147 (331)
Q Consensus 76 ~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ 147 (331)
... ...++..+. +...+....... .++.. .+...+.-+.+ .+.+.|...+....... ..+..... .
T Consensus 184 ~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 257 (618)
T 1qsa_A 184 YQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDI 257 (618)
T ss_dssp GHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHH
Confidence 111 111111111 111222222221 11111 11122223333 37889999998886543 22332222 2
Q ss_pred HHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--cHHHHHHHHHHHhhcCC
Q 043124 148 VLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQP--NAVIWGALLGGCKLHRN 225 (331)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p--~~~~~~~l~~~~~~~~~ 225 (331)
+.......+...++...+.... .. ..+.....-.+....+.|+++.|...|+.+...+ ...-..-+.+++...|+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAI-MR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR 334 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHH-HT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHhcc-cc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC
Confidence 2333344453556666666654 22 2333334444555567799999999999887432 24445566777888899
Q ss_pred HHHHHHHHHHHHh
Q 043124 226 LEIAHIAVNELMI 238 (331)
Q Consensus 226 ~~~a~~~~~~~~~ 238 (331)
.++|..+|+.+..
T Consensus 335 ~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 335 EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999998888753
No 323
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=37.37 E-value=38 Score=21.02 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=20.6
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSK 190 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (331)
..++|...|..|+.+.+|.|+ .+|...+...+.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~ 47 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-STWEKELHKIVF 47 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 346777777777777777665 355555554443
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.27 E-value=1.3e+02 Score=23.39 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=7.0
Q ss_pred HHhhCCHHHHHHHHh
Q 043124 86 YAKCGSLDRSLLVFF 100 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~ 100 (331)
.+..|+.+-+..+++
T Consensus 69 A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 69 AATLEDTKIVKILLF 83 (285)
T ss_dssp HTTSSSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344455554444444
No 325
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.80 E-value=2.4e+02 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=8.9
Q ss_pred HhcCCchHHHHHHHHH
Q 043124 255 AEVSRWAEVTKIRVAM 270 (331)
Q Consensus 255 ~~~g~~~~a~~~~~~m 270 (331)
...|+++.|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 4556666665555543
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.78 E-value=60 Score=22.25 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred HHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc
Q 043124 10 TTMITCYSQNK-QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL 57 (331)
Q Consensus 10 ~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 57 (331)
-.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566666665 6777888888888776666666655555666655544
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.61 E-value=1.1e+02 Score=21.68 Aligned_cols=70 Identities=9% Similarity=0.207 Sum_probs=46.6
Q ss_pred hhHHHHHHHH-HHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhhCCH
Q 043124 22 FREALDAFNE-MKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQI--GFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 22 ~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
.+.+++-+.+ +.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455555544 456688876653 45566777777788899999999887 6555555544556777777754
No 328
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.53 E-value=32 Score=23.21 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=22.4
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 043124 46 TVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLL 97 (331)
Q Consensus 46 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 97 (331)
-.|...+.+++.+-|.++++...+.| +...|.+++-.|...=+.|-+++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34444444555555555555554443 33344444444444444444443
No 329
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.34 E-value=1.1e+02 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCCCC
Q 043124 263 VTKIRVAMKELGIEKR 278 (331)
Q Consensus 263 a~~~~~~m~~~~~~~~ 278 (331)
-.++++.+.+.|..++
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3555666666665555
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.38 E-value=1.2e+02 Score=21.66 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=9.4
Q ss_pred hCCCHHHHHHHHHHHHH
Q 043124 119 VHGFAHEALAMFDRMIY 135 (331)
Q Consensus 119 ~~~~~~~a~~~~~~m~~ 135 (331)
+.|++..|..++.+...
T Consensus 87 ~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 87 DFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 45556666666555543
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.65 E-value=1.2e+02 Score=21.23 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=40.9
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 043124 29 FNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSL 92 (331)
Q Consensus 29 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 92 (331)
-+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456678887665543 44555556666788999999998887655665555566777777654
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.55 E-value=1.5e+02 Score=22.13 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=8.3
Q ss_pred CChhHHHHHHHHHHHCC
Q 043124 20 KQFREALDAFNEMKNSG 36 (331)
Q Consensus 20 ~~~~~a~~~~~~m~~~~ 36 (331)
.+.+.|+-.+-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444554444
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.45 E-value=65 Score=21.86 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 157 (331)
.++..+...+.+-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4555555566667777888887776655565555555566665553
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.17 E-value=1.4e+02 Score=24.30 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 043124 9 WTTMITCYSQNKQFREALDAFNEMK 33 (331)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~ 33 (331)
-..++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777778888888887777764
No 335
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.36 E-value=1.8e+02 Score=25.34 Aligned_cols=42 Identities=12% Similarity=-0.037 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 043124 225 NLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKI 266 (331)
Q Consensus 225 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 266 (331)
.++.|..+|.++..+.|++...|+.|+......|+.-+|.-.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 345555566666556666555555555555555554444433
No 336
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.78 E-value=1.5e+02 Score=21.84 Aligned_cols=183 Identities=7% Similarity=-0.022 Sum_probs=86.7
Q ss_pred HHHHHhhCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHh
Q 043124 83 VDMYAKCGSLDRSLLVFFKLR-------EKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVT--FISVLSACT 153 (331)
Q Consensus 83 ~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~ 153 (331)
+...+..|+.+-+..+++.+. ..|..-++.+ ...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 445567788888877776322 1233333333 4445566665 3444455554443221 112444456
Q ss_pred ccCcHHHHHHHHHhhhhcCCCCC---cHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcH---HHHHHHHHHHhhcCCHH
Q 043124 154 HAGLVEEGRRRFLSMTCGYSITP---EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNA---VIWGALLGGCKLHRNLE 227 (331)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~ 227 (331)
..|+.+-...+++... ..++.+ +..-.+. +...+..|+.+-+..+++. +..++. ..-...+...+..|+.+
T Consensus 88 ~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAA-PGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HTTCHHHHHHHHHHSC-TTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHcCC-CccccccccCcCCCcH-HHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCCHH
Confidence 6777777666666543 111111 1112222 3334566776666655554 322211 11122334445677877
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 043124 228 IAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKELGIEKR 278 (331)
Q Consensus 228 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 278 (331)
-+..+++.-......+..-.. .+......|+.+ +++.+.+.|..++
T Consensus 165 ~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 165 MVQLLLQHGANVNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHHTTCCTTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 666666543322211111112 223334556654 4444455666655
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.44 E-value=57 Score=22.50 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 043124 112 SIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHAGL 157 (331)
Q Consensus 112 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 157 (331)
.++..+...+.+-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444555555555667777776666555555554445555555443
No 338
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.22 E-value=2e+02 Score=23.04 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCC--chHHHHHHHHHHhcCCCCCCCccceEEeC
Q 043124 213 WGALLGGCKLHRNLEIAHIAVNELMILEPNN--SGYCTLLLNMYAEVSR--WAEVTKIRVAMKELGIEKRCPGSSWIEME 288 (331)
Q Consensus 213 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 288 (331)
...++.-|...|+.++|.+.++++.. |.. .-.+..+..++.+.++ .+.+..++..+.+.|+-+. ......-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~--p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~---~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV---DQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH---HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH---HHHHHHH
Confidence 45566667777888888777777642 210 1111223333433322 3445566666665554332 0000000
Q ss_pred CEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCccC
Q 043124 289 RKVYQFAASDKSHPASDEIYSSLSKLDEQLKLASYVP 325 (331)
Q Consensus 289 ~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~p 325 (331)
..+...+ ++..-+.|.++..++.+.......|+.|
T Consensus 244 ~~vl~~l--~Dl~lDiP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 244 ERIYNEI--PDINLDVPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHH--HHHHHHCTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhc--cHhhcccccHHHHHHHHHHHHHHCCCCC
Confidence 0000000 0222245567777777777777777765
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.76 E-value=90 Score=21.65 Aligned_cols=11 Identities=0% Similarity=-0.164 Sum_probs=5.2
Q ss_pred HHHHHHHHhhh
Q 043124 159 EEGRRRFLSMT 169 (331)
Q Consensus 159 ~~a~~~~~~~~ 169 (331)
-.|.++++.+.
T Consensus 34 ~ta~ei~~~l~ 44 (145)
T 3eyy_A 34 ATPDDILGEVR 44 (145)
T ss_dssp BCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34445555444
No 340
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.23 E-value=89 Score=25.35 Aligned_cols=152 Identities=13% Similarity=-0.025 Sum_probs=76.3
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 043124 75 DVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSA 151 (331)
Q Consensus 75 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 151 (331)
|..-++ .+...+..|+.+-+..+++.-... |..-++.| ...+..|+.+-+.-++ +.|..++...-.+.+..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYLA----SVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHHH----HHCCCCCCBTTBCHHHH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHHHH----HCCCCccccCCCCHHHH
Confidence 444444 445556779999888888764433 22233333 3344567665444444 33433332111223344
Q ss_pred HhccCcHHHHHHHHHhhhhcCCCCCcH--------------------hHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCc
Q 043124 152 CTHAGLVEEGRRRFLSMTCGYSITPEV--------------------EHYGCMVDLLSKAG--LLEDALELIRSSKFQPN 209 (331)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~p~ 209 (331)
.+..|+.+-+..+++... ..+..++. .-.+. +...+..| +.+-+..+++. +..++
T Consensus 91 A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~-ga~~~ 167 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAK-ERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQL-GASPT 167 (364)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHH-TCCTT
T ss_pred HHHcCCHHHHHHHHHhcc-ccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHc-CCCCc
Confidence 556788877777776633 22222221 11223 33345666 55555555554 43322
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 043124 210 ---AVIWGALLGGCKLHRNLEIAHIAVNEL 236 (331)
Q Consensus 210 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 236 (331)
....+.| ...+..|+.+-+..+++..
T Consensus 168 ~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 168 AKDKADETPL-MRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp CCCTTSCCHH-HHHHHTTCHHHHHHHHHHC
T ss_pred ccCCCCCCHH-HHHHHcCCHHHHHHHHhcc
Confidence 2222333 3345678887777777654
No 341
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=30.20 E-value=74 Score=17.64 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 043124 194 LEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIAV 233 (331)
Q Consensus 194 ~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 233 (331)
+.+|+..+..||+..+..=...|+. .+.||+..|.+.+
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHh
Confidence 3445555555665433222233332 3556666665554
No 342
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=30.07 E-value=2.2e+02 Score=22.96 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--ChhhHHHH--HH----HHHhCCCHHHHHHHHHH
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--NLFCWNSI--IE----GLAVHGFAHEALAMFDR 132 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l--i~----~~~~~~~~~~a~~~~~~ 132 (331)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+... ....+-++ +. ...+..+.++....++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 45666677777777777777777777766677777777766432 22211111 11 12233467777776665
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.97 E-value=82 Score=21.15 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 043124 28 AFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 28 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 69 (331)
+|+.+.+..+.|+...--.-+..+...++++.|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555544333222233334567788888777766654
No 344
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=29.26 E-value=1.4e+02 Score=24.23 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK 105 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 105 (331)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+...
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~ 273 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE 273 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC
Confidence 45566677788877777777888888777788888888877643
No 345
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.97 E-value=48 Score=19.01 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=10.8
Q ss_pred CcHHHHHHHHHhhhhcCCCCCc
Q 043124 156 GLVEEGRRRFLSMTCGYSITPE 177 (331)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~ 177 (331)
-|++.|...|..+.....|+|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 4555555555555433444443
No 346
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=28.95 E-value=57 Score=19.56 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 157 LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
..++|...|..|.++.+|.|+ .+|...+..++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~ 44 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMII 44 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHc
Confidence 356677777777766666655 35555555444
No 347
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=28.47 E-value=1.3e+02 Score=24.41 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcC
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLR 103 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 103 (331)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 345555666777776666666666666666667777666554
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.57 E-value=69 Score=22.42 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=31.2
Q ss_pred HHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc
Q 043124 11 TMITCYSQNK-QFREALDAFNEMKNSGISPDQVTMATVLSACAHLGAL 57 (331)
Q Consensus 11 ~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 57 (331)
.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4555665555 6677888888888776666666655556666666644
No 349
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.45 E-value=49 Score=24.73 Aligned_cols=53 Identities=8% Similarity=-0.061 Sum_probs=24.5
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 043124 219 GCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVSRWAEVTKIRVAMKE 272 (331)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 272 (331)
..+..|+.+-+.-+++.-......+..- ..-+......|+...+.++.+.+.+
T Consensus 183 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 183 IAARENRYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566655544443322221111111 1123344456666677777766654
No 350
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.77 E-value=1.2e+02 Score=19.30 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=31.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HccCCchHHHHHHHHHHH
Q 043124 18 QNKQFREALDAFNEMKNSGISPDQVTMATVLSAC-----AHLGALDLGREIHLYVMQ 69 (331)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~ 69 (331)
..|++-+|-++++..-.....|....|..||... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4488888888888776654334445566666543 245666 6677766654
No 351
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=26.57 E-value=2.2e+02 Score=21.91 Aligned_cols=26 Identities=0% Similarity=-0.208 Sum_probs=18.7
Q ss_pred CCCchhhHHHHHHHHHhC-CChhHHHH
Q 043124 2 PARDIISWTTMITCYSQN-KQFREALD 27 (331)
Q Consensus 2 ~~p~~~~~~~li~~~~~~-~~~~~a~~ 27 (331)
|.|....|...+...+.. |++.+++.
T Consensus 125 ~~p~~~aYt~~ll~~a~~~g~~~~~la 151 (248)
T 3no6_A 125 WPPSGDHYIKHMYFNAFARENAAFTIA 151 (248)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 356777888888777777 77776544
No 352
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.39 E-value=1.6e+02 Score=20.98 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=13.7
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCC
Q 043124 81 ALVDMYAKCGSLDRSLLVFFKLREK 105 (331)
Q Consensus 81 ~l~~~~~~~g~~~~a~~~~~~~~~~ 105 (331)
.++.=|...|+.++|...++++..|
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3455555555566665555555544
No 353
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.32 E-value=2.3e+02 Score=25.15 Aligned_cols=70 Identities=4% Similarity=-0.119 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHH
Q 043124 56 ALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEA 126 (331)
Q Consensus 56 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 126 (331)
+....+...++++..=.-.+..-..-++..|.+.|-.+.|.++++.+-.. +...+ ..+..|++.|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 34445555555554421223334445666666667777777666665443 22233 444556666665543
No 354
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.21 E-value=2.6e+02 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC
Q 043124 181 YGCMVDLLSKAGLLEDALELIRSSK 205 (331)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~ 205 (331)
...++..+.+....+.+.+++.+.+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~s~ 168 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWREAG 168 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHcC
Confidence 4445566666777777777777643
No 355
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=25.73 E-value=1.2e+02 Score=24.65 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=17.5
Q ss_pred cCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 043124 171 GYSITPEVEHYGCMVDLLSKAGLLEDALELIRS 203 (331)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (331)
+.++.|...++.-++..+++.=.++.+..+++-
T Consensus 221 ~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~ 253 (334)
T 2qq8_A 221 KNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDV 253 (334)
T ss_dssp HTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred HcCCCccchHHHHHHHHhcccCCHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 356
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.52 E-value=2.3e+02 Score=21.74 Aligned_cols=231 Identities=9% Similarity=-0.030 Sum_probs=126.8
Q ss_pred CchhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCch----HHHHHHHHHHHhCCCCchhHH
Q 043124 4 RDIISWTTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALD----LGREIHLYVMQIGFDIDVYIG 79 (331)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~ 79 (331)
+|...-...+.++.+.+. ..+...+..+.+. ++...-...+.++...|... ....++..+... .++..+-
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 444444455666666664 4456666666643 46666566667777766432 222333322222 3456666
Q ss_pred HHHHHHHHhhCC-----HHHHHHHH-hhcCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 043124 80 SALVDMYAKCGS-----LDRSLLVF-FKLREKNLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACT 153 (331)
Q Consensus 80 ~~l~~~~~~~g~-----~~~a~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 153 (331)
...+.++.+.|. ...+...+ ..+..++..+-...+.++...|+.+ +...+.++.. .++...-...+.++.
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 666666666552 33454444 3455678777778888888888743 4555555544 345555555556666
Q ss_pred ccC-cHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 043124 154 HAG-LVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVIWGALLGGCKLHRNLEIAHIA 232 (331)
Q Consensus 154 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 232 (331)
..+ ....+...+..+.. .++..+-...+.++.+.|+....-.+...+. .|+ .-...+.++...|+ ..+...
T Consensus 185 ~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~ 256 (280)
T 1oyz_A 185 INKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPV 256 (280)
T ss_dssp HHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHH
T ss_pred hhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHH
Confidence 554 23455555555552 3456666667778888886554444444443 344 22345666666776 356666
Q ss_pred HHHHHhcCCCCcchHHHHHHH
Q 043124 233 VNELMILEPNNSGYCTLLLNM 253 (331)
Q Consensus 233 ~~~~~~~~p~~~~~~~~l~~~ 253 (331)
+.+++...++ ..+....+..
T Consensus 257 L~~~l~~~~~-~~~~~~~~~~ 276 (280)
T 1oyz_A 257 LDTMLYKFDD-NEIITSAIDK 276 (280)
T ss_dssp HHHHHTTSSC-CHHHHHHHHH
T ss_pred HHHHHhcCCC-cHHHHHHHHH
Confidence 6666654444 3333334433
No 357
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=25.51 E-value=1.6e+02 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=18.7
Q ss_pred CCCchhhHHHHHHHHHhCCChhHHHH
Q 043124 2 PARDIISWTTMITCYSQNKQFREALD 27 (331)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~ 27 (331)
|.|.+..|...+...+..|++.+++.
T Consensus 109 ~~p~~~aY~~~l~~~a~~~~~~~~~a 134 (221)
T 3ibx_A 109 PTLANKSYTSYMLAEGFKGSIKEVAA 134 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35677788888877777787776543
No 358
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=25.27 E-value=3e+02 Score=23.05 Aligned_cols=31 Identities=10% Similarity=-0.106 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043124 107 LFCWNSIIEGLAVHGFAHEALAMFDRMIYEN 137 (331)
Q Consensus 107 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 137 (331)
..--..++.+++...+.+...++++......
T Consensus 267 ~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 267 STEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 3345556666666666666666666555443
No 359
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.96 E-value=3e+02 Score=22.91 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC--C-----------------CCcHHHHHHHHHHHhhcCCHHHHHHHHHHHHh------
Q 043124 184 MVDLLSKAGLLEDALELIRSSK--F-----------------QPNAVIWGALLGGCKLHRNLEIAHIAVNELMI------ 238 (331)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~--~-----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 238 (331)
++.......+.+++.++++++. + .+-......+...+...++.+.|..+++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Q ss_pred -cCC-CCcchHHHHHHHHHhcCCchHHHHHH
Q 043124 239 -LEP-NNSGYCTLLLNMYAEVSRWAEVTKIR 267 (331)
Q Consensus 239 -~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~ 267 (331)
..| ....+|...+..|...+++..+....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 360
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.89 E-value=2.1e+02 Score=20.99 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHHHHHhCCCCchhHHH--HHHHHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLYVMQIGFDIDVYIGS--ALVDMYA 87 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 87 (331)
+..+...++.|+.+....+++.-...-..++....+.|..++.... .++++.+.+.|..++..... +.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred hhCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCcHHHHH
Q 043124 88 KCGSLDRSLLVFFKLREK---NLFCWNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFI--SVLSACTHAGLVEEGR 162 (331)
Q Consensus 88 ~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~ 162 (331)
..|+.+-+..+++.-... +..-++.+..+..... .++++.+.+.|..++..... +.+...+..|+.+-+.
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR-----HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Q ss_pred HHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043124 163 RRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIR 202 (331)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 202 (331)
.+++.-. .+......-.+-+...+..|+.+-+.-+++
T Consensus 157 ~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 157 ILLFYKA---STNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCC---CccccCCCCCCHHHHHHHCCCHHHHHHHHH
No 361
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.65 E-value=3.3e+02 Score=23.32 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=12.0
Q ss_pred CchHHHHHHHHHHhcCCC
Q 043124 259 RWAEVTKIRVAMKELGIE 276 (331)
Q Consensus 259 ~~~~a~~~~~~m~~~~~~ 276 (331)
+.++++-++-.+...|.-
T Consensus 396 ~~devEcIlA~LI~~G~I 413 (455)
T 3t5v_B 396 SPKNVENVLVTLINLGLL 413 (455)
T ss_dssp CSSCHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 566777777777766653
No 362
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=24.48 E-value=79 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHhcCccCcc
Q 043124 304 SDEIYSSLSKLDEQLKLASYVPEL 327 (331)
Q Consensus 304 ~~~~~~~l~~l~~~~~~~g~~p~~ 327 (331)
-..++..+..--+.++..|+.||.
T Consensus 15 lirIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCe
Confidence 346677778888899999999986
No 363
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=24.33 E-value=2.2e+02 Score=22.71 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCCC--ChhhHHHH--HH----HHHhCCCHHHHHHHHH
Q 043124 62 EIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLREK--NLFCWNSI--IE----GLAVHGFAHEALAMFD 131 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l--i~----~~~~~~~~~~a~~~~~ 131 (331)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+... ....+-++ +. ... ..+.++....++
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL-QADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH-TCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 45666777788888888888888887777788888888766532 22211111 10 112 247888888876
No 364
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.83 E-value=2.3e+02 Score=21.10 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043124 19 NKQFREALDAFNEMKNSGISPDQVTMATVLSACA 52 (331)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 52 (331)
..+.+.|+-.+-+|.+.|-.|.-..-..++.+..
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4667777777777777765444333334444443
No 365
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.59 E-value=1.2e+02 Score=17.82 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 043124 110 WNSIIEGLAVHGFAHEALAMFDRMIYENVEPNGVTFISVLSACTHA 155 (331)
Q Consensus 110 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 155 (331)
++.++..++...-.++++-.+.++.+.| ..+..+|..-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4455555555555667777777777766 34555565555555543
No 366
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.55 E-value=1.9e+02 Score=20.23 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHH
Q 043124 145 FISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLS 189 (331)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (331)
++.+...+...|-.++.+.-+..|. . .-+......++..|.
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~-~---~~~~~~~~ell~~Fl 50 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQ-D---ENNPEFVFEVVSLFF 50 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTC-B---TTBTTHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhh-c---CCCHHHHHHHHHHHH
Confidence 3444555555666664444444444 1 123334455555543
No 367
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.51 E-value=2.1e+02 Score=26.00 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 043124 216 LLGGCKLHRNLEIAHIAVNELMILEPNNSGYCTLLLNMYAEVS 258 (331)
Q Consensus 216 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 258 (331)
..+.....|++.-|.++++.++..+|++..+...+..+|.+.|
T Consensus 455 ~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 455 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3444678899999999999999999999888777888887765
No 368
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.98 E-value=79 Score=21.56 Aligned_cols=19 Identities=5% Similarity=0.113 Sum_probs=10.8
Q ss_pred HHHHHhCCChhHHHHHHHH
Q 043124 13 ITCYSQNKQFREALDAFNE 31 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~ 31 (331)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666666655
No 369
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.51 E-value=3e+02 Score=22.08 Aligned_cols=25 Identities=4% Similarity=0.062 Sum_probs=14.5
Q ss_pred HHHHHHHCCCCCCH--hhHHHHHHHHH
Q 043124 28 AFNEMKNSGISPDQ--VTMATVLSACA 52 (331)
Q Consensus 28 ~~~~m~~~~~~p~~--~~~~~l~~~~~ 52 (331)
-++++...|+++.. .+|..++....
T Consensus 51 ~l~~~~~~GIP~~lR~~vW~~Llg~~~ 77 (331)
T 3qye_A 51 KMHSAVGQGVPRHHRGEIWKFLAEQFH 77 (331)
T ss_dssp HHHHHHHTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCcch
Confidence 34455556876554 35777766554
No 370
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.45 E-value=1.7e+02 Score=22.13 Aligned_cols=55 Identities=5% Similarity=-0.187 Sum_probs=29.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHH--ccCCchHHHHHHHHH
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQV-------TMATVLSACA--HLGALDLGREIHLYV 67 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 67 (331)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334446677777777777666655544432 2233433332 456666665555543
No 371
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.37 E-value=1.7e+02 Score=25.13 Aligned_cols=22 Identities=14% Similarity=0.156 Sum_probs=12.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 043124 114 IEGLAVHGFAHEALAMFDRMIY 135 (331)
Q Consensus 114 i~~~~~~~~~~~a~~~~~~m~~ 135 (331)
+..+.-.+++.+|.+.+.....
T Consensus 227 Gr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 227 GRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHH
Confidence 3444555666666665555443
No 372
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.85 E-value=3.9e+02 Score=23.11 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=76.9
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCHHHHHHHH
Q 043124 54 LGALDLGREIHLYVMQIGFDIDVYIGSALVDMYAKCGSLDRSLLVFFKLRE---KNLFCWNSIIEGLAVHGFAHEALAMF 130 (331)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 130 (331)
..+.+.|.++ +.+.|++--...|..-.+.+...|++++|-++--...+ ++..|.+.+-..=..-|+..--+..|
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 3556655444 44566655555666667777888888888877665543 34444444443333445566666777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhhhcCCCCCcHhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 043124 131 DRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMTCGYSITPEVEHYGCMVDLLSKAGLLEDALELIRSSKF 206 (331)
Q Consensus 131 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (331)
..+.+.| ..+..--.-+++.-...|+.+-..+.+.+ ..+..+...=. ++ +..+..-|+.+|.+.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGD-LV----KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHH-HH----HHHCSHHHHHHHHHHCC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHh-hh----hhcCHHHHHHHHHHcCC
Confidence 7777665 33433223345555556665544444433 33344433222 12 44466667777766553
No 373
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.81 E-value=4.5e+02 Score=23.86 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=23.3
Q ss_pred HhHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCCcH
Q 043124 178 VEHYGCMVDL-----LSKAGLLEDALELIRSSKFQPNA 210 (331)
Q Consensus 178 ~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~p~~ 210 (331)
..++..|++. +...|+++.|++.++++++-|..
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 4455555443 37889999999999998876743
No 374
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.61 E-value=1.1e+02 Score=19.46 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 043124 247 CTLLLNMYAEVSRWAEVTKIRVAM 270 (331)
Q Consensus 247 ~~~l~~~~~~~g~~~~a~~~~~~m 270 (331)
+.-....+.+.|+|++|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344555566666666665554443
No 375
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.58 E-value=1.7e+02 Score=21.80 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=10.6
Q ss_pred HHHccCCchHHHHHHHHHH
Q 043124 50 ACAHLGALDLGREIHLYVM 68 (331)
Q Consensus 50 ~~~~~~~~~~a~~~~~~~~ 68 (331)
.|.+.|.+++|.++++...
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 4555566666666655543
No 376
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.43 E-value=1.3e+02 Score=20.47 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=8.0
Q ss_pred HHhhCCHHHHHHHHhh
Q 043124 86 YAKCGSLDRSLLVFFK 101 (331)
Q Consensus 86 ~~~~g~~~~a~~~~~~ 101 (331)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555544
No 377
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.26 E-value=1.2e+02 Score=23.05 Aligned_cols=161 Identities=11% Similarity=-0.073 Sum_probs=73.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCcHHH-------HHHHHHHHh--ccCcHHHHHHHHHhhhhc--------CCCC-C
Q 043124 115 EGLAVHGFAHEALAMFDRMIYENVEPNGVT-------FISVLSACT--HAGLVEEGRRRFLSMTCG--------YSIT-P 176 (331)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~--------~~~~-~ 176 (331)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-... ..+. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344556777777777776666554443221 222333321 556666666666553210 0000 1
Q ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCcHHH----------------HHHHHHHHhhcCCHHHHHHHHH---HHH
Q 043124 177 EVEHYGCMVDLLSKAGLLEDALELIRSSKFQPNAVI----------------WGALLGGCKLHRNLEIAHIAVN---ELM 237 (331)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~----------------~~~l~~~~~~~~~~~~a~~~~~---~~~ 237 (331)
+..-++. +...+..|+.+-+.-+++. +..++... -.+.+...+..|+.+-+..+++ .-.
T Consensus 90 d~~g~t~-L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 90 YYRGQTA-LHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp SEESBCH-HHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccCCCCH-HHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 1112222 3334566777766666653 32222111 1123334456788777777666 222
Q ss_pred hcCCCCcchHHHHHHHHHhcCC----chHHHHHHHHHHhcCCCC
Q 043124 238 ILEPNNSGYCTLLLNMYAEVSR----WAEVTKIRVAMKELGIEK 277 (331)
Q Consensus 238 ~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~~~~~~~ 277 (331)
.....+..-...|..+...... .+...++++.+.+.|..+
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 2222222222334333332222 222245666666666554
No 378
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.21 E-value=1.7e+02 Score=18.81 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-HH-HHHHHHHhhhhcCCCCCcHhHHHHH
Q 043124 125 EALAMFDRMIYENVEPNGVTFISVLSACTHAGL-VE-EGRRRFLSMTCGYSITPEVEHYGCM 184 (331)
Q Consensus 125 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~l 184 (331)
.|.++.++....|+.|+......++..|..-+- .+ -+.+++..-....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356666777777888888777777777665443 11 1222222222245667766555543
No 379
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.96 E-value=1.8e+02 Score=24.30 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHccCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHh
Q 043124 13 ITCYSQNKQFREALDAFNEMKNSGISPDQVT--MATVLSACAHLGALDLGREIHLYVMQIGFDIDVY--IGSALVDMYAK 88 (331)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 88 (331)
+...+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+-+..+ ++.|..++.. .-.+.+...+.
T Consensus 18 L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHH
Confidence 33444556665444443 4454443221 11233334455665544333 3344332211 11123334455
Q ss_pred hCCHHHHHHHHhhc
Q 043124 89 CGSLDRSLLVFFKL 102 (331)
Q Consensus 89 ~g~~~~a~~~~~~~ 102 (331)
.|+.+-+.-+++.-
T Consensus 90 ~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 90 IGHTNMVKLLLENN 103 (437)
T ss_dssp HTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCC
Confidence 56666555555543
No 380
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=20.31 E-value=1.2e+02 Score=16.65 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHHHHCCCCCC
Q 043124 21 QFREALDAFNEMKNSGISPD 40 (331)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~p~ 40 (331)
+...|+++++.+.+.|--|+
T Consensus 8 Dv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHcCCCCc
Confidence 45667777777766664443
No 381
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=20.29 E-value=2.8e+02 Score=20.86 Aligned_cols=63 Identities=5% Similarity=-0.091 Sum_probs=35.5
Q ss_pred CCCchhhHHHHHHHHHhC-CChhHHHHHH-----------HHHHHCCCCCCHhhHHHHHHHHHccCCchHHHHHHHH
Q 043124 2 PARDIISWTTMITCYSQN-KQFREALDAF-----------NEMKNSGISPDQVTMATVLSACAHLGALDLGREIHLY 66 (331)
Q Consensus 2 ~~p~~~~~~~li~~~~~~-~~~~~a~~~~-----------~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 66 (331)
|.|.+..|...+...+.. |++.+++..+ +.+.+.+..++...|...|..|. ..+..+.+.+..
T Consensus 106 ~~p~~~aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~--~~f~~~v~~~~~ 180 (229)
T 4fn6_A 106 WPPSGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYS--TEMDDIINVFES 180 (229)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCTTCCTTSTHHHHHHHHT--TTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHh--HHHHHHHHHHHH
Confidence 456777888888777777 8877754422 22222221112346777777776 445444443333
No 382
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.28 E-value=2e+02 Score=19.21 Aligned_cols=41 Identities=5% Similarity=-0.108 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 043124 129 MFDRMIYENVEPNGVTFISVLSACTHAGLVEEGRRRFLSMT 169 (331)
Q Consensus 129 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 169 (331)
+|+.+.+..+.|+...-..-+..+...++++.|..+...+.
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555554444444555667778888888877776
No 383
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.12 E-value=1.3e+02 Score=16.86 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCC--HHHHHHHHhhcCCC
Q 043124 61 REIHLYVMQIGFDIDVYIGSALVDMYAKCGS--LDRSLLVFFKLREK 105 (331)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~ 105 (331)
.+.++.+.+.|+++.. ...++.+.|. ++.|++.+.+|.-|
T Consensus 10 ~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 4556777777776542 2334555566 88888888877544
No 384
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.02 E-value=3.7e+02 Score=22.15 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCc--hHHHHHHHHHHHhCCCCchhHHHHHHH
Q 043124 10 TTMITCYSQNKQFREALDAFNEMKNSGISPD---QVTMATVLSACAHLGAL--DLGREIHLYVMQIGFDIDVYIGSALVD 84 (331)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~ 84 (331)
..+|.-|...|+.++|...++++. .|+ ......++......++. +.+-.++..+...++-+.......+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHhhCCHH
Q 043124 85 MYAKCGSLD 93 (331)
Q Consensus 85 ~~~~~g~~~ 93 (331)
.+....++.
T Consensus 92 lle~l~Dl~ 100 (364)
T 3l6a_A 92 VLDQCPKLE 100 (364)
T ss_dssp HHHTHHHHH
T ss_pred HHhhChHhc
Done!