Query 043126
Match_columns 67
No_of_seqs 109 out of 531
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 13:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3386 Copper transporter [In 99.8 5.5E-20 1.2E-24 124.8 6.2 54 2-56 95-148 (155)
2 PF04145 Ctr: Ctr copper trans 99.8 4.2E-20 9.1E-25 118.5 2.7 44 2-45 101-144 (144)
3 PF11446 DUF2897: Protein of u 93.4 0.059 1.3E-06 31.3 1.8 28 24-51 1-28 (55)
4 COG2991 Uncharacterized protei 85.2 0.92 2E-05 28.2 2.4 25 28-53 8-32 (77)
5 PF06295 DUF1043: Protein of u 78.5 1.5 3.3E-05 28.6 1.7 18 29-46 1-18 (128)
6 COG3763 Uncharacterized protei 75.2 1.7 3.7E-05 26.7 1.2 20 28-47 8-27 (71)
7 PRK01061 Na(+)-translocating N 75.0 21 0.00046 26.2 7.0 60 1-60 147-221 (244)
8 PF03672 UPF0154: Uncharacteri 73.8 3.3 7.2E-05 24.8 2.2 19 29-47 2-20 (64)
9 PRK11677 hypothetical protein; 73.1 3.1 6.8E-05 27.8 2.2 18 29-46 5-22 (134)
10 PRK01844 hypothetical protein; 68.3 2.3 4.9E-05 26.1 0.6 16 30-45 10-25 (72)
11 PF06376 DUF1070: Protein of u 68.0 5.6 0.00012 21.2 2.0 14 11-24 14-27 (34)
12 PF14012 DUF4229: Protein of u 67.8 21 0.00046 21.1 4.8 35 18-52 18-58 (69)
13 PF01062 Bestrophin: Bestrophi 64.9 21 0.00045 25.0 5.0 51 2-52 214-265 (293)
14 PRK00523 hypothetical protein; 63.2 3.4 7.3E-05 25.4 0.7 16 30-45 11-26 (72)
15 PF12072 DUF3552: Domain of un 59.9 9.5 0.00021 26.3 2.5 20 29-48 5-24 (201)
16 PF13829 DUF4191: Domain of un 59.2 34 0.00074 24.9 5.3 38 13-50 39-76 (224)
17 PF10031 DUF2273: Small integr 52.9 40 0.00088 18.9 4.8 32 13-44 14-49 (51)
18 PF04206 MtrE: Tetrahydrometha 52.2 37 0.0008 25.4 4.6 43 2-47 55-97 (269)
19 TIGR03510 XapX XapX domain. Th 51.9 18 0.0004 20.5 2.4 25 30-55 2-26 (49)
20 PRK00972 tetrahydromethanopter 50.7 40 0.00086 25.5 4.6 42 2-47 62-103 (292)
21 COG5336 Uncharacterized protei 43.1 78 0.0017 21.1 4.7 44 11-54 58-101 (116)
22 PRK02898 cobalt transport prot 42.8 20 0.00044 23.1 1.8 25 4-44 66-90 (100)
23 TIGR01113 mtrE N5-methyltetrah 42.2 61 0.0013 24.5 4.5 43 2-47 55-97 (283)
24 PF06305 DUF1049: Protein of u 42.1 35 0.00076 19.0 2.6 19 28-46 22-40 (68)
25 COG3105 Uncharacterized protei 39.5 33 0.00071 23.4 2.5 17 29-45 10-26 (138)
26 PRK15051 4-amino-4-deoxy-L-ara 38.2 1E+02 0.0022 19.2 6.4 42 7-49 41-89 (111)
27 PF11772 EpuA: DNA-directed RN 37.5 13 0.00029 20.8 0.4 20 30-49 8-27 (47)
28 PF06612 DUF1146: Protein of u 37.0 38 0.00082 18.8 2.2 16 29-44 32-47 (48)
29 COG0472 Rfe UDP-N-acetylmuramy 36.1 1.4E+02 0.0031 22.1 5.6 25 26-50 188-212 (319)
30 PRK10255 PTS system N-acetyl g 34.3 1E+02 0.0022 25.5 5.0 37 10-47 73-114 (648)
31 PF15179 Myc_target_1: Myc tar 34.1 39 0.00084 24.3 2.3 16 30-45 25-40 (197)
32 TIGR02327 int_mem_ywzB conserv 33.3 49 0.0011 19.7 2.4 18 29-46 39-56 (68)
33 PRK02919 oxaloacetate decarbox 31.7 1.3E+02 0.0027 18.5 4.2 27 12-39 6-32 (82)
34 PF07790 DUF1628: Protein of u 31.2 80 0.0017 18.3 3.0 17 31-47 14-30 (80)
35 PF12270 Cyt_c_ox_IV: Cytochro 30.7 70 0.0015 21.6 3.0 31 28-58 39-69 (137)
36 PF10112 Halogen_Hydrol: 5-bro 30.6 1.7E+02 0.0037 19.7 6.4 26 20-45 23-48 (199)
37 COG3031 PulC Type II secretory 30.2 1.5E+02 0.0033 22.3 4.9 52 1-59 1-52 (275)
38 TIGR00908 2A0305 ethanolamine 30.1 1.4E+02 0.003 22.0 4.8 39 18-56 398-440 (442)
39 PRK10132 hypothetical protein; 29.9 58 0.0013 20.9 2.4 18 30-47 90-107 (108)
40 PF15050 SCIMP: SCIMP protein 29.1 64 0.0014 21.9 2.6 19 27-45 7-28 (133)
41 PF04113 Gpi16: Gpi16 subunit, 27.7 46 0.001 26.8 2.0 21 23-43 509-529 (564)
42 PF02116 STE2: Fungal pheromon 26.1 87 0.0019 23.2 3.1 20 4-24 34-53 (284)
43 PRK11431 multidrug efflux syst 26.1 1.8E+02 0.0038 18.3 6.2 43 7-49 33-82 (105)
44 PF01307 Plant_vir_prot: Plant 25.6 1E+02 0.0022 19.7 3.0 30 29-58 9-38 (104)
45 PF09527 ATPase_gene1: Putativ 25.5 1.2E+02 0.0027 16.4 3.3 15 30-44 10-24 (55)
46 PF12732 YtxH: YtxH-like prote 25.4 87 0.0019 18.0 2.5 17 28-44 3-19 (74)
47 PRK05151 electron transport co 24.8 1.4E+02 0.0031 21.0 3.9 23 2-24 129-151 (193)
48 TIGR01948 rnfE electron transp 24.8 1.4E+02 0.0031 21.1 3.8 26 1-26 118-143 (196)
49 PRK12456 Na(+)-translocating N 24.4 1.5E+02 0.0032 21.1 3.9 24 2-25 136-159 (199)
50 TIGR01940 nqrE NADH:ubiquinone 24.3 1.5E+02 0.0031 21.2 3.8 25 1-25 137-161 (200)
51 TIGR01939 nqrD NADH:ubiquinone 23.7 1.5E+02 0.0032 21.2 3.8 26 1-26 124-149 (207)
52 PF01102 Glycophorin_A: Glycop 22.7 76 0.0016 20.9 2.0 9 29-37 68-76 (122)
53 PF07916 TraG_N: TraG-like pro 22.7 3.1E+02 0.0067 20.5 5.5 24 1-24 332-355 (466)
54 PRK07718 fliL flagellar basal 22.3 1.4E+02 0.003 19.5 3.2 16 32-47 14-29 (142)
55 PF06679 DUF1180: Protein of u 21.9 92 0.002 21.5 2.4 31 24-54 93-123 (163)
56 PF02508 Rnf-Nqr: Rnf-Nqr subu 21.9 1.8E+02 0.004 20.1 3.9 24 2-25 127-150 (190)
57 PF06127 DUF962: Protein of un 21.7 2E+02 0.0044 17.5 6.1 44 7-50 22-70 (95)
58 PF04834 Adeno_E3_14_5: Early 21.7 2.3E+02 0.0051 18.2 4.6 25 28-52 31-56 (97)
59 PF12273 RCR: Chitin synthesis 21.3 95 0.0021 19.7 2.3 21 32-52 9-29 (130)
60 PF05365 UCR_UQCRX_QCR9: Ubiqu 21.1 1.3E+02 0.0029 17.1 2.6 25 23-47 8-32 (55)
61 PF06027 DUF914: Eukaryotic pr 20.6 2.7E+02 0.0058 21.0 4.8 40 9-48 239-284 (334)
62 PRK10650 multidrug efflux syst 20.5 2.4E+02 0.0052 17.9 6.2 44 6-49 38-88 (109)
63 COG5547 Small integral membran 20.4 2.1E+02 0.0045 17.1 4.7 29 16-44 17-49 (62)
No 1
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.5e-20 Score=124.81 Aligned_cols=54 Identities=33% Similarity=0.618 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhccccccCCCCC
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPP 56 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~~~~~~~~ 56 (67)
+++|+++|.+|++++|+|||++||||+|+++|+++|+++||++|+++.. .+.++
T Consensus 95 h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~-~~~~~ 148 (155)
T KOG3386|consen 95 HLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF-TPTSE 148 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc-cCCCc
Confidence 6899999999999999999999999999999999999999999999998 44433
No 2
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=99.79 E-value=4.2e-20 Score=118.54 Aligned_cols=44 Identities=32% Similarity=0.635 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhh
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIF 45 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~F 45 (67)
+++|+++|++|++++|+|||+|||||+|+++||++|.++||++|
T Consensus 101 ~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F 144 (144)
T PF04145_consen 101 HLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF 144 (144)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence 57899999999999999999999999999999999999999998
No 3
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=93.40 E-value=0.059 Score=31.32 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=23.6
Q ss_pred HhhhhHHHHHHHHHHHhhHHhhcccccc
Q 043126 24 MSFNGGVFLVAVAGHTFGFFIFGSRVFN 51 (67)
Q Consensus 24 MTfN~~~~isvv~G~~~G~~~Fg~~~~~ 51 (67)
|+.|+|+++.+++|..+|...-=+...+
T Consensus 1 ~~~~~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 1 STWNPWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence 6889999999999999999887555443
No 4
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.22 E-value=0.92 Score=28.22 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhhHHhhccccccCC
Q 043126 28 GGVFLVAVAGHTFGFFIFGSRVFNKS 53 (67)
Q Consensus 28 ~~~~isvv~G~~~G~~~Fg~~~~~~~ 53 (67)
.++|+.+++|..+|| +|+++.+..+
T Consensus 8 Fg~Fllvi~gMsiG~-I~krk~I~GS 32 (77)
T COG2991 8 FGIFLLVIAGMSIGY-IFKRKSIKGS 32 (77)
T ss_pred HHHHHHHHHHHhHhh-heeccccccc
Confidence 467889999999999 6677766443
No 5
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=78.53 E-value=1.5 Score=28.55 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhHHhhc
Q 043126 29 GVFLVAVAGHTFGFFIFG 46 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg 46 (67)
|++++.++|.++|+++..
T Consensus 1 y~~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGR 18 (128)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 567888899999987743
No 6
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.23 E-value=1.7 Score=26.68 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHhhHHhhcc
Q 043126 28 GGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 28 ~~~~isvv~G~~~G~~~Fg~ 47 (67)
.++.+|.++|...|+|+=.+
T Consensus 8 l~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999887443
No 7
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=74.96 E-value=21 Score=26.25 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHh--------------hhhHHHHHHHHHH-HhhHHhhccccccCCCCCCCCC
Q 043126 1 MPTPKYYLSASHVAAGFLVMLAIMS--------------FNGGVFLVAVAGH-TFGFFIFGSRVFNKSSPPPKTS 60 (67)
Q Consensus 1 ~~lira~l~~~q~~i~Y~LMLivMT--------------fN~~~~isvv~G~-~~G~~~Fg~~~~~~~~~~~~~~ 60 (67)
+++.+++.+++-.++||.|-|+.|. |.+.-+.-+.+|. .+.++-|......+|+..+++.
T Consensus 147 ~~~~~S~~~Glg~GlGftLALvl~a~iRErL~~~~iP~~~~G~pIafI~aGlmalAF~gf~G~~~~~~~~~~~~~ 221 (244)
T PRK01061 147 YPFIPMMIFSLGAGCGWWLAIVLFATIREKLAYSDVPKNLQGMGISFITTGLIAMAFMGLTGIDISKPSTSIQRA 221 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHhcccCeeecCCCCccccC
Confidence 3678899999999999999999985 6666666677776 5677777777777777644443
No 8
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=73.79 E-value=3.3 Score=24.80 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhHHhhcc
Q 043126 29 GVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg~ 47 (67)
.++++.++|..+|+|+=.+
T Consensus 2 ~iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARK 20 (64)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4678899999999987433
No 9
>PRK11677 hypothetical protein; Provisional
Probab=73.14 E-value=3.1 Score=27.83 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhHHhhc
Q 043126 29 GVFLVAVAGHTFGFFIFG 46 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg 46 (67)
+.+++.++|.++|+++-.
T Consensus 5 ~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788888888887744
No 10
>PRK01844 hypothetical protein; Provisional
Probab=68.34 E-value=2.3 Score=26.15 Aligned_cols=16 Identities=44% Similarity=0.683 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhHHhh
Q 043126 30 VFLVAVAGHTFGFFIF 45 (67)
Q Consensus 30 ~~isvv~G~~~G~~~F 45 (67)
.+++.++|..+|+|+=
T Consensus 10 ~I~~li~G~~~Gff~a 25 (72)
T PRK01844 10 GVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888999998873
No 11
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=67.97 E-value=5.6 Score=21.23 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 043126 11 SHVAAGFLVMLAIM 24 (67)
Q Consensus 11 ~q~~i~Y~LMLivM 24 (67)
+.-+++|+||+++-
T Consensus 14 iDqgiay~Lm~~Al 27 (34)
T PF06376_consen 14 IDQGIAYMLMLVAL 27 (34)
T ss_pred hhHHHHHHHHHHHH
Confidence 45689999998764
No 12
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=67.83 E-value=21 Score=21.06 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHHHHHHhhh------hHHHHHHHHHHHhhHHhhccccccC
Q 043126 18 LVMLAIMSFN------GGVFLVAVAGHTFGFFIFGSRVFNK 52 (67)
Q Consensus 18 ~LMLivMTfN------~~~~isvv~G~~~G~~~Fg~~~~~~ 52 (67)
.++++..... ....++++++..+++++|++.+..-
T Consensus 18 vi~~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~~R~~~ 58 (69)
T PF14012_consen 18 VIWLVGLLIGVEVPLLVAALLALVISMPLSYVLLRRLRDRA 58 (69)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 6688999999999999999876543
No 13
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=64.88 E-value=21 Score=24.99 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=35.3
Q ss_pred chHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhccccccC
Q 043126 2 PTPKYYLSASH-VAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNK 52 (67)
Q Consensus 2 ~lira~l~~~q-~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~~~~ 52 (67)
|++.+.-+.++ +...|++.+.+.--+..-.+.+++...++++.+|.+....
T Consensus 214 PiP~~Y~~~~~~~l~~y~~~lPf~l~~~~~~~~~~~~~l~~~~~~gl~~ig~ 265 (293)
T PF01062_consen 214 PIPFAYTQHLSRFLYIYLLLLPFGLVDSLGWLTPPITFLVSFFFLGLEEIGE 265 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444 4556877777776666666668888889999999887643
No 14
>PRK00523 hypothetical protein; Provisional
Probab=63.22 E-value=3.4 Score=25.38 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhHHhh
Q 043126 30 VFLVAVAGHTFGFFIF 45 (67)
Q Consensus 30 ~~isvv~G~~~G~~~F 45 (67)
.+++.++|...|+|+=
T Consensus 11 ~i~~li~G~~~Gffia 26 (72)
T PRK00523 11 GIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567888888888773
No 15
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=59.93 E-value=9.5 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhHHhhccc
Q 043126 29 GVFLVAVAGHTFGFFIFGSR 48 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg~~ 48 (67)
..+++.++|.++||++..+.
T Consensus 5 ~~i~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999885443
No 16
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=59.24 E-value=34 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhccccc
Q 043126 13 VAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVF 50 (67)
Q Consensus 13 ~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~~ 50 (67)
+.++.++.++.=+.=.|+++++.+|..+..++|+++..
T Consensus 39 ~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 39 IAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555455566889999999999999998753
No 17
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.91 E-value=40 Score=18.94 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhhH----HHHHHHHHHHhhHHh
Q 043126 13 VAAGFLVMLAIMSFNGG----VFLVAVAGHTFGFFI 44 (67)
Q Consensus 13 ~~i~Y~LMLivMTfN~~----~~isvv~G~~~G~~~ 44 (67)
..++.++=+.++++-.| +++.+++|..+|..+
T Consensus 14 ~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 14 GLIGLILALLILTFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888888777 666777777777653
No 18
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=52.16 E-value=37 Score=25.44 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhcc
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~ 47 (67)
|...+++.++--.++|.|| ..++.-.++++++|+.++-++-+.
T Consensus 55 P~aygl~~ai~g~iA~~lm---~~~~~~~i~ai~~Ga~vAa~v~g~ 97 (269)
T PF04206_consen 55 PPAYGLWCAIAGAIAWALM---SAFGLNPILAIAIGAAVAALVHGV 97 (269)
T ss_pred CchhhHHHHHHHHHHHHHH---HHcCccHHHHHHHHHHHHHHHHHH
Confidence 5666778888888888887 345666899999999998877543
No 19
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=51.90 E-value=18 Score=20.50 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhHHhhccccccCCCC
Q 043126 30 VFLVAVAGHTFGFFIFGSRVFNKSSP 55 (67)
Q Consensus 30 ~~isvv~G~~~G~~~Fg~~~~~~~~~ 55 (67)
+.+|...|..+|. +|+..+...|.|
T Consensus 2 ~llsl~~G~~vG~-~~~~l~vp~PAP 26 (49)
T TIGR03510 2 YLLSLGAGLLVGA-LYSLLKVPSPAP 26 (49)
T ss_pred cHHHHHHHHHHHH-HHHHhCCCCCCC
Confidence 3578888888887 677776666654
No 20
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=50.71 E-value=40 Score=25.55 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhcc
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~ 47 (67)
|..-+++.++--.++|.|| .+.+| .++++++|+.++-++.+.
T Consensus 62 P~aygl~~ai~g~vA~~lm--~~~~~--~vlAi~~Ga~vaa~vhg~ 103 (292)
T PRK00972 62 PVAYGLWCAIAGAVAWALM--AFGLN--PVLAIIVGAGVAALVHGV 103 (292)
T ss_pred CchhHHHHHHHHHHHHHHH--HcCcc--HHHHHHHHHHHHHHHHHH
Confidence 5666778888888998888 45554 567999999998877643
No 21
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.07 E-value=78 Score=21.06 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhccccccCCC
Q 043126 11 SHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS 54 (67)
Q Consensus 11 ~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~~~~~~ 54 (67)
+-++++|+|==.+=|=..++++..++|...|.+.--|+.-.+..
T Consensus 58 VGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rsag~va~ 101 (116)
T COG5336 58 VGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRSAGKVAE 101 (116)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44678888888888888999999999999999887776554444
No 22
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=42.81 E-value=20 Score=23.13 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHh
Q 043126 4 PKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFI 44 (67)
Q Consensus 4 ira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~ 44 (67)
+.++|+.+|..++ +.++|..+||+-
T Consensus 66 iESLLFaLQAAiG----------------AgiIgY~lG~~~ 90 (100)
T PRK02898 66 IESLLFALQAALG----------------AGIIGYILGYYK 90 (100)
T ss_pred HHHHHHHHHHHHh----------------hhhhheeeeehh
Confidence 5688999998887 667777777754
No 23
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=42.18 E-value=61 Score=24.48 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhcc
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~ 47 (67)
|..-+++.++.-.++|.||.-. +.-.++++++|+.++-++.+.
T Consensus 55 P~aygl~~~i~g~vA~~l~~~~---~~~~ilAi~~Ga~vaa~v~~~ 97 (283)
T TIGR01113 55 PVSYGLYCGIAGAVAYVLMSYF---GLPPLIALAVGAVIAALVHLA 97 (283)
T ss_pred CchhHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHH
Confidence 5666777888888888887533 555788999999988877543
No 24
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.08 E-value=35 Score=18.96 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhHHhhc
Q 043126 28 GGVFLVAVAGHTFGFFIFG 46 (67)
Q Consensus 28 ~~~~isvv~G~~~G~~~Fg 46 (67)
..++++.++|..+|.++..
T Consensus 22 l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777888888876654
No 25
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.53 E-value=33 Score=23.44 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhHHhh
Q 043126 29 GVFLVAVAGHTFGFFIF 45 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~F 45 (67)
+..++.|+|.+||+.+-
T Consensus 10 ~a~igLvvGi~IG~li~ 26 (138)
T COG3105 10 YALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788899999999763
No 26
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=38.23 E-value=1e+02 Score=19.23 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHhhHHhhcccc
Q 043126 7 YLSASHVAAGFLVMLAIMS-------FNGGVFLVAVAGHTFGFFIFGSRV 49 (67)
Q Consensus 7 ~l~~~q~~i~Y~LMLivMT-------fN~~~~isvv~G~~~G~~~Fg~~~ 49 (67)
.+-.+++++++.++..+|. |-.+- ++.+....+|+++|+.+.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~l 89 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPV 89 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence 3444777888888877775 55555 677788889999998664
No 27
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=37.46 E-value=13 Score=20.79 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhHHhhcccc
Q 043126 30 VFLVAVAGHTFGFFIFGSRV 49 (67)
Q Consensus 30 ~~isvv~G~~~G~~~Fg~~~ 49 (67)
.+++.++|..+||-+.|...
T Consensus 8 ~~~~l~iGlmIGY~viG~G~ 27 (47)
T PF11772_consen 8 AILALAIGLMIGYGVIGDGN 27 (47)
T ss_pred HHHHHHHHHHeeeeeeCCCC
Confidence 56788999999999888764
No 28
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=36.98 E-value=38 Score=18.82 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhHHh
Q 043126 29 GVFLVAVAGHTFGFFI 44 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~ 44 (67)
.+++|+.+|..++.|.
T Consensus 32 ~vllsIalGylvs~Ff 47 (48)
T PF06612_consen 32 IVLLSIALGYLVSSFF 47 (48)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4678888888887764
No 29
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=36.06 E-value=1.4e+02 Score=22.13 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHhhHHhhccccc
Q 043126 26 FNGGVFLVAVAGHTFGFFIFGSRVF 50 (67)
Q Consensus 26 fN~~~~isvv~G~~~G~~~Fg~~~~ 50 (67)
+...++.+.++|+.+||+.|++...
T Consensus 188 ~~~~~~~~al~ga~LGFL~~N~~PA 212 (319)
T COG0472 188 GELALICAALAGACLGFLWFNFYPA 212 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCChh
Confidence 4455888999999999999988753
No 30
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=34.25 E-value=1e+02 Score=25.49 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhHHhhcc
Q 043126 10 ASHVAAGFLVMLAIMS-----FNGGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 10 ~~q~~i~Y~LMLivMT-----fN~~~~isvv~G~~~G~~~Fg~ 47 (67)
++.-.++|++|..+|. .|.+++..+++|...++ ++.+
T Consensus 73 ala~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~-l~nk 114 (648)
T PRK10255 73 ALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGA-AYNR 114 (648)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHH-HHHH
Confidence 3455689999988754 47888999999998887 4443
No 31
>PF15179 Myc_target_1: Myc target protein 1
Probab=34.09 E-value=39 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHhh
Q 043126 30 VFLVAVAGHTFGFFIF 45 (67)
Q Consensus 30 ~~isvv~G~~~G~~~F 45 (67)
+++++++|..+|-++|
T Consensus 25 F~vSm~iGLviG~li~ 40 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIW 40 (197)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666665554
No 32
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=33.34 E-value=49 Score=19.75 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhHHhhc
Q 043126 29 GVFLVAVAGHTFGFFIFG 46 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg 46 (67)
.+++|+.+|..++.|..+
T Consensus 39 ~vllaIalGylvs~FfL~ 56 (68)
T TIGR02327 39 VVLIAIALGYTVSHFFLE 56 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478899999999988754
No 33
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=31.74 E-value=1.3e+02 Score=18.49 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 043126 12 HVAAGFLVMLAIMSFNGGVFLVAVAGHT 39 (67)
Q Consensus 12 q~~i~Y~LMLivMTfN~~~~isvv~G~~ 39 (67)
++.=|--||+.=|.+ +.+|+++++.+.
T Consensus 6 ll~~gl~lMvlGMg~-VfvFL~lLI~~i 32 (82)
T PRK02919 6 LLGEGFTLMFLGMGF-VLAFLFLLIFAI 32 (82)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344466788888988 788888888764
No 34
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=31.16 E-value=80 Score=18.28 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhHHhhcc
Q 043126 31 FLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 31 ~isvv~G~~~G~~~Fg~ 47 (67)
.+.+++.+.+|-++|+.
T Consensus 14 aitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 14 AITVILAAVVGAFVFGL 30 (80)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 35677777788888887
No 35
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=30.70 E-value=70 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhhHHhhccccccCCCCCCC
Q 043126 28 GGVFLVAVAGHTFGFFIFGSRVFNKSSPPPK 58 (67)
Q Consensus 28 ~~~~isvv~G~~~G~~~Fg~~~~~~~~~~~~ 58 (67)
+.+.++..++..+|.++--..+...+.|||+
T Consensus 39 ~aL~ls~~l~~mig~yl~~~~rr~~~rPED~ 69 (137)
T PF12270_consen 39 VALVLSGGLALMIGFYLRFTARRIGPRPEDR 69 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Confidence 3477888888888877654444445555444
No 36
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.62 E-value=1.7e+02 Score=19.67 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhHHhh
Q 043126 20 MLAIMSFNGGVFLVAVAGHTFGFFIF 45 (67)
Q Consensus 20 MLivMTfN~~~~isvv~G~~~G~~~F 45 (67)
...+..++...++++++|.+.+..++
T Consensus 23 ~~~~~~~~~~~~l~~l~~~~~~~~~~ 48 (199)
T PF10112_consen 23 LVSFFGFDHSFLLSLLIGAVAFAVVY 48 (199)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444566666667777776555443
No 37
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=30.16 E-value=1.5e+02 Score=22.35 Aligned_cols=52 Identities=13% Similarity=0.297 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhccccccCCCCCCCC
Q 043126 1 MPTPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKT 59 (67)
Q Consensus 1 ~~lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~~~~~~~~~~~ 59 (67)
||+.|==.|..| -|+ .|--|..+++++++-...-|..|.|.......|-++.
T Consensus 1 ~p~~~~p~~la~---m~w----~~ais~~itl~~~~ss~w~y~~f~~~~~an~qpvnkp 52 (275)
T COG3031 1 MPTLRFPFHLAN---MYW----VYAISLAITLSVFLSSFWLYYLFNRSLDANFQPVNKP 52 (275)
T ss_pred CCcccchHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHhhheEEEeecccccCCC
Confidence 566666666666 233 3344677888888888888889988877666654443
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=30.06 E-value=1.4e+02 Score=22.01 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=22.0
Q ss_pred HHHHHHHhhh-h--H-HHHHHHHHHHhhHHhhccccccCCCCC
Q 043126 18 LVMLAIMSFN-G--G-VFLVAVAGHTFGFFIFGSRVFNKSSPP 56 (67)
Q Consensus 18 ~LMLivMTfN-~--~-~~isvv~G~~~G~~~Fg~~~~~~~~~~ 56 (67)
+.+++.+.++ . . ..+.+.+..+++|++..|.+..+.+|+
T Consensus 398 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 440 (442)
T TIGR00908 398 CVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVSGTPE 440 (442)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhccCcc
Confidence 4445555443 2 1 235667777888888766655443333
No 39
>PRK10132 hypothetical protein; Provisional
Probab=29.90 E-value=58 Score=20.88 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhHHhhcc
Q 043126 30 VFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 30 ~~isvv~G~~~G~~~Fg~ 47 (67)
+-|+..+|..+|.++..|
T Consensus 90 vgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 90 VGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 556777888888876544
No 40
>PF15050 SCIMP: SCIMP protein
Probab=29.07 E-value=64 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=10.9
Q ss_pred hhHHHHHH---HHHHHhhHHhh
Q 043126 27 NGGVFLVA---VAGHTFGFFIF 45 (67)
Q Consensus 27 N~~~~isv---v~G~~~G~~~F 45 (67)
|.|+++|| +++.++|..+|
T Consensus 7 nFWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 44555543 45666666666
No 41
>PF04113 Gpi16: Gpi16 subunit, GPI transamidase component; InterPro: IPR007245 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins. Gpi16 is an essential N-glycosylated transmembrane glycoprotein. Gpi16 is largely found on the lumenal side of the ER. It has a single C-terminal transmembrane domain and a small C-terminal, cytosolic extension with an ER retrieval motif [].; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=27.74 E-value=46 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.2
Q ss_pred HHhhhhHHHHHHHHHHHhhHH
Q 043126 23 IMSFNGGVFLVAVAGHTFGFF 43 (67)
Q Consensus 23 vMTfN~~~~isvv~G~~~G~~ 43 (67)
-|-||+-.+.+++++.++|-.
T Consensus 509 SMPyNVI~lt~Tv~Al~FG~i 529 (564)
T PF04113_consen 509 SMPYNVIILTCTVMALAFGSI 529 (564)
T ss_pred CccchhhHHHHHHHHHHHHHH
Confidence 389999999999999999985
No 42
>PF02116 STE2: Fungal pheromone mating factor STE2 GPCR; InterPro: IPR000366 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures.; GO: 0004932 mating-type factor pheromone receptor activity, 0016020 membrane; PDB: 2K9P_A.
Probab=26.10 E-value=87 Score=23.16 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043126 4 PKYYLSASHVAAGFLVMLAIM 24 (67)
Q Consensus 4 ira~l~~~q~~i~Y~LMLivM 24 (67)
-.++.|+.|.+.+ ++||++|
T Consensus 34 ~~~I~yg~qiGA~-~~llivL 53 (284)
T PF02116_consen 34 RTAINYGVQIGAC-LLLLIVL 53 (284)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 3578999999999 6666555
No 43
>PRK11431 multidrug efflux system protein; Provisional
Probab=26.07 E-value=1.8e+02 Score=18.32 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhHHhhcccc
Q 043126 7 YLSASHVAAGFLVMLAIM-------SFNGGVFLVAVAGHTFGFFIFGSRV 49 (67)
Q Consensus 7 ~l~~~q~~i~Y~LMLivM-------TfN~~~~isvv~G~~~G~~~Fg~~~ 49 (67)
+...+-+.++|.++-.+| .|-.|--+.++.-..+|.+.|+.+.
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~ 82 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444566677877776666 6778888888888899999998664
No 44
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=25.58 E-value=1e+02 Score=19.66 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhHHhhccccccCCCCCCC
Q 043126 29 GVFLVAVAGHTFGFFIFGSRVFNKSSPPPK 58 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg~~~~~~~~~~~~ 58 (67)
+.++++++|..++-++|-..+...|..-|+
T Consensus 9 k~~l~~aiG~~lal~i~~ltr~tlPhvGDn 38 (104)
T PF01307_consen 9 KSYLAAAIGVSLALIIFTLTRSTLPHVGDN 38 (104)
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 456677777777777776666666654333
No 45
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.52 E-value=1.2e+02 Score=16.36 Aligned_cols=15 Identities=13% Similarity=0.485 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhHHh
Q 043126 30 VFLVAVAGHTFGFFI 44 (67)
Q Consensus 30 ~~isvv~G~~~G~~~ 44 (67)
+..++++|..+|+++
T Consensus 10 ~~~~i~~g~~~G~~l 24 (55)
T PF09527_consen 10 MAAPILVGFFLGYWL 24 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666655
No 46
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.43 E-value=87 Score=18.04 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHhhHHh
Q 043126 28 GGVFLVAVAGHTFGFFI 44 (67)
Q Consensus 28 ~~~~isvv~G~~~G~~~ 44 (67)
.++++..++|+.+|.+.
T Consensus 3 ~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46778888888888854
No 47
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=24.76 E-value=1.4e+02 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIM 24 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivM 24 (67)
++.+++.+++-.++||.+-++.|
T Consensus 129 ~~~~s~~~glg~GlGf~lal~ll 151 (193)
T PRK05151 129 NFLQSALYGFGAAVGFSLVLVLF 151 (193)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665554
No 48
>TIGR01948 rnfE electron transport complex, RnfABCDGE type, E subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the E subunit.
Probab=24.76 E-value=1.4e+02 Score=21.09 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhh
Q 043126 1 MPTPKYYLSASHVAAGFLVMLAIMSF 26 (67)
Q Consensus 1 ~~lira~l~~~q~~i~Y~LMLivMTf 26 (67)
+|..+|+.+++..++||.+-|+.|..
T Consensus 118 ~~~~~s~~dglg~GlGf~laL~lla~ 143 (196)
T TIGR01948 118 NGVLPSILDGLGMGLGFTLVLFVLGG 143 (196)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999988887753
No 49
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=24.43 E-value=1.5e+02 Score=21.09 Aligned_cols=24 Identities=8% Similarity=0.306 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMS 25 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMT 25 (67)
+..+++.+++-.++||.+-|+.|.
T Consensus 136 ~~~~s~~~glg~GlGftlal~l~a 159 (199)
T PRK12456 136 TFTESFVYGTGCGLGWMLAIISMA 159 (199)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888887777664
No 50
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=24.29 E-value=1.5e+02 Score=21.15 Aligned_cols=25 Identities=4% Similarity=0.107 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHh
Q 043126 1 MPTPKYYLSASHVAAGFLVMLAIMS 25 (67)
Q Consensus 1 ~~lira~l~~~q~~i~Y~LMLivMT 25 (67)
++..+|+.+++-.++||.+-|+.|.
T Consensus 137 ~~~~~S~~~glg~GlGf~lal~l~a 161 (200)
T TIGR01940 137 YNFGESVVYGFGSGLGWMLAIVALA 161 (200)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888877764
No 51
>TIGR01939 nqrD NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit. This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=23.73 E-value=1.5e+02 Score=21.24 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhh
Q 043126 1 MPTPKYYLSASHVAAGFLVMLAIMSF 26 (67)
Q Consensus 1 ~~lira~l~~~q~~i~Y~LMLivMTf 26 (67)
+|..+++.+++-.++||.+-|+.+..
T Consensus 124 ~~~~~S~~dGlg~GlGftlaL~lla~ 149 (207)
T TIGR01939 124 NPPIPSFLDGIGNGLGYGWVLVIIGF 149 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999998887753
No 52
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.67 E-value=76 Score=20.90 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 043126 29 GVFLVAVAG 37 (67)
Q Consensus 29 ~~~isvv~G 37 (67)
+++++|++|
T Consensus 68 ~Ii~gv~aG 76 (122)
T PF01102_consen 68 GIIFGVMAG 76 (122)
T ss_dssp HHHHHHHHH
T ss_pred ehhHHHHHH
Confidence 344444443
No 53
>PF07916 TraG_N: TraG-like protein, N-terminal region; InterPro: IPR012931 This domain is found in the N-terminal region of the TraG protein (P33790 from SWISSPROT) from Escherichia coli. This is a membrane-spanning protein, with three predicted transmembrane segments and two periplasmic regions []. The TraG protein is known to be essential for DNA transfer in the process of conjugation, with the N-terminal portion being required for F pilus assembly [, ]. The protein is thought to interact with the periplasmic domain of TraN (P24082 from SWISSPROT) to stabilise mating-cell interactions [].
Probab=22.67 E-value=3.1e+02 Score=20.46 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 043126 1 MPTPKYYLSASHVAAGFLVMLAIM 24 (67)
Q Consensus 1 ~~lira~l~~~q~~i~Y~LMLivM 24 (67)
+|..|+++.++-+.+.=+++++.+
T Consensus 332 lP~~~~~l~~i~~~~~Piv~~l~~ 355 (466)
T PF07916_consen 332 LPMMQAFLEMIIYALFPIVLLLSL 355 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888887777776666
No 54
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.29 E-value=1.4e+02 Score=19.47 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=7.6
Q ss_pred HHHHHHHHhhHHhhcc
Q 043126 32 LVAVAGHTFGFFIFGS 47 (67)
Q Consensus 32 isvv~G~~~G~~~Fg~ 47 (67)
+++.+|.+.+||++.+
T Consensus 14 ~~l~~~g~~~~~~~~~ 29 (142)
T PRK07718 14 IVIALIGTAALVLVMG 29 (142)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3444444555555444
No 55
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.89 E-value=92 Score=21.47 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=22.6
Q ss_pred HhhhhHHHHHHHHHHHhhHHhhccccccCCC
Q 043126 24 MSFNGGVFLVAVAGHTFGFFIFGSRVFNKSS 54 (67)
Q Consensus 24 MTfN~~~~isvv~G~~~G~~~Fg~~~~~~~~ 54 (67)
|+...-+++..+-+..+.||++...+.++++
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~ 123 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRLRRRN 123 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3455556777778888899999887777644
No 56
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=21.86 E-value=1.8e+02 Score=20.11 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMS 25 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMT 25 (67)
+..+++.+++-.++||.+-++.+.
T Consensus 127 ~~~~s~~~glg~glGf~lal~l~a 150 (190)
T PF02508_consen 127 SFLESLVDGLGAGLGFTLALVLLA 150 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888877777663
No 57
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=21.68 E-value=2e+02 Score=17.47 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHH----HHhhHHhhccccc
Q 043126 7 YLSASHVAAGFLVM-LAIMSFNGGVFLVAVAG----HTFGFFIFGSRVF 50 (67)
Q Consensus 7 ~l~~~q~~i~Y~LM-LivMTfN~~~~isvv~G----~~~G~~~Fg~~~~ 50 (67)
.+|.+-+-+.++.. +...+-+.++.+++.+. .++||+.|.++++
T Consensus 22 ~lH~igvp~~~~~~~~~~~~~~~~~~l~~~~~g~~~q~~GH~~~E~~~P 70 (95)
T PF06127_consen 22 ALHFIGVPLIIFSLLLLLARIPWWLALAVFVVGWGLQFIGHFFFEKNKP 70 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhHHHHHcCCC
Confidence 56666666555533 44444555655554433 4788888876654
No 58
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=21.66 E-value=2.3e+02 Score=18.18 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHh-hHHhhccccccC
Q 043126 28 GGVFLVAVAGHTF-GFFIFGSRVFNK 52 (67)
Q Consensus 28 ~~~~isvv~G~~~-G~~~Fg~~~~~~ 52 (67)
+-++.|.++|..+ +.|=|||.....
T Consensus 31 ~~v~~~t~~~l~iYp~f~~gWn~~~~ 56 (97)
T PF04834_consen 31 VLVFCSTFFSLAIYPCFDFGWNHPFA 56 (97)
T ss_pred HHHHHHHHHHHhhhheeeccccCccc
Confidence 5567777777655 455677776655
No 59
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.34 E-value=95 Score=19.73 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=10.9
Q ss_pred HHHHHHHHhhHHhhccccccC
Q 043126 32 LVAVAGHTFGFFIFGSRVFNK 52 (67)
Q Consensus 32 isvv~G~~~G~~~Fg~~~~~~ 52 (67)
+.+++-.+++.+.+.+++.++
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333455555566666655
No 60
>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa. Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....
Probab=21.08 E-value=1.3e+02 Score=17.12 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=19.1
Q ss_pred HHhhhhHHHHHHHHHHHhhHHhhcc
Q 043126 23 IMSFNGGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 23 vMTfN~~~~isvv~G~~~G~~~Fg~ 47 (67)
++--|..++.+|++|+.+....|+.
T Consensus 8 ~fkRns~y~~~i~~gaf~fe~~fd~ 32 (55)
T PF05365_consen 8 FFKRNSTYVLTIFAGAFFFERAFDS 32 (55)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHhH
Confidence 3445677888999999988888764
No 61
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=20.59 E-value=2.7e+02 Score=20.99 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHhhHHhhccc
Q 043126 9 SASHVAAGFLVMLAIM------SFNGGVFLVAVAGHTFGFFIFGSR 48 (67)
Q Consensus 9 ~~~q~~i~Y~LMLivM------TfN~~~~isvv~G~~~G~~~Fg~~ 48 (67)
|.+-..+-|.+|=+++ .+|..+..+...+..+|.++|+.+
T Consensus 239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~ 284 (334)
T PF06027_consen 239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYK 284 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcc
Confidence 4555566676664333 378888888888888887777654
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=20.54 E-value=2.4e+02 Score=17.89 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhHHhhcccc
Q 043126 6 YYLSASHVAAGFLVMLAIM-------SFNGGVFLVAVAGHTFGFFIFGSRV 49 (67)
Q Consensus 6 a~l~~~q~~i~Y~LMLivM-------TfN~~~~isvv~G~~~G~~~Fg~~~ 49 (67)
++...+-+.++|.++-.+| .|-.|--+.++.-..+|.+.|+.+.
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~ 88 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL 88 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455666777888886666 5777777777777888998888653
No 63
>COG5547 Small integral membrane protein [Function unknown]
Probab=20.42 E-value=2.1e+02 Score=17.09 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhH----HHHHHHHHHHhhHHh
Q 043126 16 GFLVMLAIMSFNGG----VFLVAVAGHTFGFFI 44 (67)
Q Consensus 16 ~Y~LMLivMTfN~~----~~isvv~G~~~G~~~ 44 (67)
+-++-+..|||-.| +++-+.+|..+|++.
T Consensus 17 glliAili~t~GfwKtilviil~~lGv~iGl~~ 49 (62)
T COG5547 17 GLLIAILILTFGFWKTILVIILILLGVYIGLYK 49 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777766 556667788888875
Done!