Query 043126
Match_columns 67
No_of_seqs 109 out of 531
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 99.0 8.7E-14 3E-18 71.6 0.0 27 2-28 2-28 (29)
2 2ls4_A High affinity copper up 98.2 8.4E-10 2.9E-14 55.5 0.0 24 26-49 1-24 (26)
3 2k9p_A Pheromone alpha factor 34.5 51 0.0017 19.3 3.5 17 4-20 20-36 (80)
4 2jwa_A Receptor tyrosine-prote 27.3 61 0.0021 17.2 2.7 16 29-44 20-35 (44)
5 2klu_A T-cell surface glycopro 21.9 56 0.0019 19.1 2.0 12 34-45 12-23 (70)
6 1pp9_J Ubiquinol-cytochrome C 20.1 89 0.0031 17.5 2.6 25 23-47 13-37 (62)
7 4hyg_A Putative uncharacterize 19.6 1.9E+02 0.0066 21.0 4.9 40 3-42 44-83 (301)
8 2zt9_E Cytochrome B6-F complex 18.5 1.1E+02 0.0036 15.2 2.6 21 14-41 4-24 (31)
9 2w3z_A Putative deacetylase; P 18.1 26 0.00088 24.4 0.0 19 29-47 23-41 (311)
10 2i68_A Protein EMRE; transmemb 16.7 2E+02 0.007 17.7 6.0 39 10-48 37-82 (137)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=99.03 E-value=8.7e-14 Score=71.61 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043126 2 PTPKYYLSASHVAAGFLVMLAIMSFNG 28 (67)
Q Consensus 2 ~lira~l~~~q~~i~Y~LMLivMTfN~ 28 (67)
+++||++|++|.++||+|||++||||+
T Consensus 2 h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 2 HLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 689999999999999999999999997
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.24 E-value=8.4e-10 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHhhHHhhcccc
Q 043126 26 FNGGVFLVAVAGHTFGFFIFGSRV 49 (67)
Q Consensus 26 fN~~~~isvv~G~~~G~~~Fg~~~ 49 (67)
||+|+++||++|+++|||+|++++
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 899999999999999999999875
No 3
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=34.49 E-value=51 Score=19.35 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043126 4 PKYYLSASHVAAGFLVM 20 (67)
Q Consensus 4 ira~l~~~q~~i~Y~LM 20 (67)
-.++.|++|++.+-++.
T Consensus 20 ~~~I~~G~~iGAs~lll 36 (80)
T 2k9p_A 20 TQAILFGVRSGAAALTL 36 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999999985444
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.30 E-value=61 Score=17.17 Aligned_cols=16 Identities=50% Similarity=0.970 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhHHh
Q 043126 29 GVFLVAVAGHTFGFFI 44 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~ 44 (67)
++++.+++|..++.|+
T Consensus 20 Gvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 20 GILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhe
Confidence 3667778888877766
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.94 E-value=56 Score=19.11 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=7.1
Q ss_pred HHHHHHhhHHhh
Q 043126 34 AVAGHTFGFFIF 45 (67)
Q Consensus 34 vv~G~~~G~~~F 45 (67)
+++|.++|.++|
T Consensus 12 ivlGg~~~lll~ 23 (70)
T 2klu_A 12 IVLGGVAGLLLF 23 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 566666655544
No 6
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=20.11 E-value=89 Score=17.52 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHhhhhHHHHHHHHHHHhhHHhhcc
Q 043126 23 IMSFNGGVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 23 vMTfN~~~~isvv~G~~~G~~~Fg~ 47 (67)
++--|.-+..+|++|+.++...|+.
T Consensus 13 ~frRnS~y~~~i~~gaf~fe~~~d~ 37 (62)
T 1pp9_J 13 LFRRTSTFALTIVVGALFFERAFDQ 37 (62)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 3445667889999999999888864
No 7
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=19.63 E-value=1.9e+02 Score=20.99 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhH
Q 043126 3 TPKYYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGF 42 (67)
Q Consensus 3 lira~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~ 42 (67)
..++++|..-..+--.+||.++=||.--++..+++..+.+
T Consensus 44 ~sNs~~YI~~ILvfT~~mL~l~k~~~~~ii~~ii~~~i~~ 83 (301)
T 4hyg_A 44 VANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFM 83 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3567888888888888999999898876666665555444
No 8
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=18.53 E-value=1.1e+02 Score=15.22 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 043126 14 AAGFLVMLAIMSFNGGVFLVAVAGHTFG 41 (67)
Q Consensus 14 ~i~Y~LMLivMTfN~~~~isvv~G~~~G 41 (67)
.++|++.|.+ ++++.+|..+|
T Consensus 4 ~i~y~~~l~~-------~~~iA~GL~fG 24 (31)
T 2zt9_E 4 IVAYIGFLAL-------FTGIAAGLLFG 24 (31)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHH
Confidence 4556655543 34555555554
No 9
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=18.12 E-value=26 Score=24.43 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHhhcc
Q 043126 29 GVFLVAVAGHTFGFFIFGS 47 (67)
Q Consensus 29 ~~~isvv~G~~~G~~~Fg~ 47 (67)
.+|+++++|..++++++-.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (311)
T 2w3z_A 23 LLFSLLIIGLVLGVVLVQA 41 (311)
T ss_dssp -------------------
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 3667777887777765544
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=16.71 E-value=2e+02 Score=17.73 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhHHhhccc
Q 043126 10 ASHVAAGFLVMLAIM-------SFNGGVFLVAVAGHTFGFFIFGSR 48 (67)
Q Consensus 10 ~~q~~i~Y~LMLivM-------TfN~~~~isvv~G~~~G~~~Fg~~ 48 (67)
.+-..++|+++..++ .|..|.-+..++...+|.++|+..
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555666665555 344444555556666666665543
Done!