Query 043126
Match_columns 67
No_of_seqs 109 out of 531
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 23:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043126.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043126hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 23.3 88 0.0064 19.9 5.3 44 6-49 6-49 (248)
2 d1ppjw_ f.23.14.1 (W:) Subunit 13.2 86 0.0062 16.4 2.8 20 27-46 17-36 (62)
3 d2gmga1 a.4.5.82 (A:1-105) Hyp 12.3 25 0.0018 20.4 0.3 16 41-58 74-89 (105)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 10.1 88 0.0064 14.2 1.9 13 30-42 10-22 (32)
5 d1q90m_ f.23.25.1 (M:) PetM su 9.6 77 0.0056 14.7 1.6 14 34-47 16-29 (34)
6 d1v54d_ f.23.1.1 (D:) Mitochon 8.5 88 0.0064 18.7 1.9 21 30-50 78-98 (144)
7 d1m56c_ f.25.1.1 (C:) Bacteria 8.5 1.9E+02 0.014 17.8 3.7 22 5-27 204-225 (265)
8 d1swya_ d.2.1.3 (A:) Phage T4 6.7 68 0.0049 18.3 0.7 11 20-30 98-108 (164)
9 d3cx5i1 f.23.14.1 (I:4-58) Sub 6.6 73 0.0053 16.3 0.7 20 27-46 11-30 (55)
10 d1xjua_ d.2.1.3 (A:) Endolysin 6.4 72 0.0053 18.1 0.7 11 20-30 80-90 (158)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=23.26 E-value=88 Score=19.92 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHhhcccc
Q 043126 6 YYLSASHVAAGFLVMLAIMSFNGGVFLVAVAGHTFGFFIFGSRV 49 (67)
Q Consensus 6 a~l~~~q~~i~Y~LMLivMTfN~~~~isvv~G~~~G~~~Fg~~~ 49 (67)
+++-.+.....|...++..-=+.++.+.+++-..++.++|.+++
T Consensus 6 ~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 6 SVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 46667777788877777766666666666666677777777654
No 2
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.18 E-value=86 Score=16.36 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhhHHhhc
Q 043126 27 NGGVFLVAVAGHTFGFFIFG 46 (67)
Q Consensus 27 N~~~~isvv~G~~~G~~~Fg 46 (67)
|.-+...|++|+.++.-.|.
T Consensus 17 nStf~~tI~~gAf~fE~~fD 36 (62)
T d1ppjw_ 17 TSTFALTIVVGALFFERAFD 36 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44577888899988887774
No 3
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=12.29 E-value=25 Score=20.41 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=11.9
Q ss_pred hHHhhccccccCCCCCCC
Q 043126 41 GFFIFGSRVFNKSSPPPK 58 (67)
Q Consensus 41 G~~~Fg~~~~~~~~~~~~ 58 (67)
|| +|. +.+++|+-|++
T Consensus 74 Gf-vFr-~~~kkPSRCP~ 89 (105)
T d2gmga1 74 GF-VFK-AEINIPSRCPK 89 (105)
T ss_dssp CC-BCC-CCSSCCSSCSS
T ss_pred CC-eec-ccCCCCCCCCC
Confidence 66 784 57888997776
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.13 E-value=88 Score=14.21 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhH
Q 043126 30 VFLVAVAGHTFGF 42 (67)
Q Consensus 30 ~~isvv~G~~~G~ 42 (67)
+|++...|..+|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566677777775
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.57 E-value=77 Score=14.69 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=10.2
Q ss_pred HHHHHHhhHHhhcc
Q 043126 34 AVAGHTFGFFIFGS 47 (67)
Q Consensus 34 vv~G~~~G~~~Fg~ 47 (67)
.++|..+|+.+.+-
T Consensus 16 tl~glaigfvllrv 29 (34)
T d1q90m_ 16 TLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheee
Confidence 46788888877653
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.55 E-value=88 Score=18.70 Aligned_cols=21 Identities=14% Similarity=-0.099 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhHHhhccccc
Q 043126 30 VFLVAVAGHTFGFFIFGSRVF 50 (67)
Q Consensus 30 ~~isvv~G~~~G~~~Fg~~~~ 50 (67)
++..+++|.++|.++|...+.
T Consensus 78 v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 78 VVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 7
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.48 E-value=1.9e+02 Score=17.84 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 043126 5 KYYLSASHVAAGFLVMLAIMSFN 27 (67)
Q Consensus 5 ra~l~~~q~~i~Y~LMLivMTfN 27 (67)
-+.+|++++.+|- ++|+++.+.
T Consensus 204 lTG~Hg~HV~~G~-i~l~~~~~~ 225 (265)
T d1m56c_ 204 ATGFHGFHVIVGT-IFLLVCLIR 225 (265)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Confidence 3678899998884 444444443
No 8
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=6.74 E-value=68 Score=18.31 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=9.1
Q ss_pred HHHHHhhhhHH
Q 043126 20 MLAIMSFNGGV 30 (67)
Q Consensus 20 MLivMTfN~~~ 30 (67)
.|+-|+||++.
T Consensus 98 alvs~~fNlG~ 108 (164)
T d1swya_ 98 ALINMVFQMGE 108 (164)
T ss_dssp HHHHHHHHHCH
T ss_pred HHeechhhcCC
Confidence 68999999763
No 9
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.61 E-value=73 Score=16.26 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHhhHHhhc
Q 043126 27 NGGVFLVAVAGHTFGFFIFG 46 (67)
Q Consensus 27 N~~~~isvv~G~~~G~~~Fg 46 (67)
|.-+...|++|+.++.-.|.
T Consensus 11 nSv~~~tI~~gAf~fe~~fD 30 (55)
T d3cx5i1 11 NAVFVGTIFAGAFVFQTVFD 30 (55)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33456788888888887774
No 10
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.41 E-value=72 Score=18.05 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=8.9
Q ss_pred HHHHHhhhhHH
Q 043126 20 MLAIMSFNGGV 30 (67)
Q Consensus 20 MLivMTfN~~~ 30 (67)
-|+-|+||++.
T Consensus 80 alvs~~fN~G~ 90 (158)
T d1xjua_ 80 AMTSAAFNMGC 90 (158)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHhhccCc
Confidence 47889999885
Done!