BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043127
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M72|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
          Length = 314

 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 189 KGKKFLSTVANPTSQI-SVIGNLVGAQAAANMGWKECAVCLFSLGMVHYLVLFVTLYQRL 247
           +G  F     +P+  + +V  N   A + A +G+ +     F  GM+ +++    L Q L
Sbjct: 129 QGGVFEQKSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHL 188

Query: 248 SGGNRLPAMLRPVFFLFFAAPSVASLAWASI-AGAFDTASKMX-XXXXXXXXXXXVCRPA 305
              +  P   R    +  A P V   A+ SI  G  DT +K+                P 
Sbjct: 189 RISSLEP-QFRATMGIVLAPPFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFLLRLFPW 247

Query: 306 LFKRSMRRFNVAWWAYSFPLTVLALASTEY 335
           + ++ +   N+  WA+SFPL  +A ++T +
Sbjct: 248 IVEKGL---NIGLWAFSFPLASMANSATAF 274


>pdb|3M76|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
          Length = 314

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 189 KGKKFLSTVANPTSQI-SVIGNLVGAQAAANMGWKECAVCLFSLGMVHYLVLFVTLYQRL 247
           +G  F     +P+  + +V  N   A + A +G+ +     F  GM+ +++    L Q L
Sbjct: 129 QGGVFEQKSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHL 188

Query: 248 SGGNRLPAMLRPVFFLFFAAPSVASLAWASI-AGAFDTASKMX-XXXXXXXXXXXVCRPA 305
              +  P   R    +  A   V   A+ SI  G  DT +K+                P 
Sbjct: 189 RISSLEP-QFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFLLRLFPW 247

Query: 306 LFKRSMRRFNVAWWAYSFPLTVLALASTEY 335
           + ++ +   N+  WA+SF L  +A ++T +
Sbjct: 248 IVEKGL---NIGLWAFSFGLASMANSATAF 274


>pdb|3M71|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
 pdb|3M7B|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
 pdb|3M7C|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
 pdb|3M7E|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
          Length = 314

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 189 KGKKFLSTVANPTSQI-SVIGNLVGAQAAANMGWKECAVCLFSLGMVHYLVLFVTLYQRL 247
           +G  F     +P+  + +V  N   A + A +G+ +     F  GM+ +++    L Q L
Sbjct: 129 QGGVFEQKSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHL 188

Query: 248 SGGNRLPAMLRPVFFLFFAAPSVASLAWASI-AGAFDTASKMX-XXXXXXXXXXXVCRPA 305
              +  P   R    +  A   V   A+ SI  G  DT +K+                P 
Sbjct: 189 RISSLEP-QFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFLLRLFPW 247

Query: 306 LFKRSMRRFNVAWWAYSFPLTVLALASTEY 335
           + ++ +   N+  WA+SF L  +A ++T +
Sbjct: 248 IVEKGL---NIGLWAFSFGLASMANSATAF 274


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,593,502
Number of Sequences: 62578
Number of extensions: 332755
Number of successful extensions: 916
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 9
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)