Query 043127
Match_columns 390
No_of_seqs 141 out of 910
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10764 potassium-tellurite e 100.0 1.5E-57 3.3E-62 448.9 33.9 314 48-380 4-321 (324)
2 TIGR00816 tdt C4-dicarboxylate 100.0 1.9E-52 4.1E-57 412.1 31.9 298 53-367 1-314 (320)
3 PF03595 SLAC1: Voltage-depend 100.0 8.1E-52 1.7E-56 408.3 30.3 302 51-367 1-329 (330)
4 COG1275 TehA Tellurite resista 100.0 2.4E-48 5.1E-53 381.6 30.4 311 46-374 2-321 (329)
5 PF03595 SLAC1: Voltage-depend 98.0 0.0012 2.6E-08 65.2 20.7 205 54-283 74-302 (330)
6 TIGR00816 tdt C4-dicarboxylate 97.8 0.0092 2E-07 59.0 23.3 197 55-280 73-284 (320)
7 COG1275 TehA Tellurite resista 97.1 0.23 5E-06 49.5 23.4 204 95-309 103-317 (329)
8 PRK10764 potassium-tellurite e 97.0 0.23 5E-06 49.3 22.3 190 57-279 83-275 (324)
9 KOG1485 Mitochondrial Fe2+ tra 42.5 62 0.0013 33.3 6.2 41 26-75 167-207 (412)
10 PF05297 Herpes_LMP1: Herpesvi 31.0 16 0.00035 35.6 0.0 50 313-363 131-186 (381)
11 PF01102 Glycophorin_A: Glycop 26.2 67 0.0015 27.4 2.9 35 84-119 55-89 (122)
12 PF05251 UPF0197: Uncharacteri 25.2 2E+02 0.0044 22.5 5.1 51 250-300 8-72 (77)
13 COG5264 VTC1 Vacuolar transpor 24.2 2.3E+02 0.0049 24.3 5.6 23 55-77 36-58 (126)
14 PRK12657 putative monovalent c 23.1 4.2E+02 0.0092 21.7 9.2 77 231-309 12-88 (100)
15 PF03839 Sec62: Translocation 22.7 1.8E+02 0.0038 27.6 5.3 57 53-123 105-164 (224)
No 1
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=100.00 E-value=1.5e-57 Score=448.86 Aligned_cols=314 Identities=23% Similarity=0.315 Sum_probs=283.7
Q ss_pred hhhccCChhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 043127 48 SILSRFHAGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTKMV 127 (390)
Q Consensus 48 ~~l~~~p~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~ 127 (390)
++++++|++||+++||++|+|++|++.++. .+.++.++++++.++.++|++++++|++|+.+||+++
T Consensus 4 ~~~~~~p~~~f~~~mG~~gL~~~~~~~~~~-------------~~~~~~i~~~~~~la~~l~~~l~~~~~~k~~~~p~~~ 70 (324)
T PRK10764 4 DKVLPLPAGYFGIVLGLIGLGFAWRYAAQL-------------WPLPAWIGEALVALASIIWALLILAYLYKWIRFPESV 70 (324)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHH-------------hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 457899999999999999999999987643 5677899999999999999999999999999999999
Q ss_pred HHHhhCcccccccchHHHHHHHHHccccCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcccccch
Q 043127 128 KVEFLNHVGVNYLFAPWISWLLLLQSAPFVAPKEVSYLVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQISVI 207 (390)
Q Consensus 128 ~~el~hP~~~~f~~t~~ma~~~l~~~~~~~~~~~~~~~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp~V 207 (390)
++|++||++++|++|++|+++++ +....+.....+.++|++|+++|+.+++.++++++.++ .+.|++||+|++|+|
T Consensus 71 ~~el~hPv~~~f~~t~~ms~~ll--~~~~~~~~~~~a~~lW~~g~~l~l~~~~~~~~~~~~~~--~~~~~~~PaW~ip~V 146 (324)
T PRK10764 71 LAELRHPVQSSFVSLIPITTMLV--AIGLVPYSRPLAVVLFSFGVVGQLAFAAWRTAGLWRGG--HPEEATTPGLYLPTV 146 (324)
T ss_pred HHHHcCcchhhhhhHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccCChhhhhccc
Confidence 99999999999999999998875 55545566678889999999999999999888887653 467899999999999
Q ss_pred hh-HHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhC-chhHH
Q 043127 208 GN-LVGAQAAANMGWKECAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASIAG-AFDTA 285 (390)
Q Consensus 208 g~-iV~a~~g~~l~~~~~~~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~g-~~~~~ 285 (390)
|. ++++.+|+.+++++.++++||+|+++|+++++++++|+.+++++|++.+|+++|.+||++++..||+++++ ..|.+
T Consensus 147 ~~~~v~~~a~~~~~~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~~~~~~~~ 226 (324)
T PRK10764 147 ANNFVSAMALGALGYHDAGLLFLGAGVFSWLSLEPVILQRLRSSGELPTALRPSLGIQLAPAFVGCSAYLSVNGGEGDTL 226 (324)
T ss_pred hhhhHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhHHHHHHHHHHHcCcchhHH
Confidence 65 69999999999899999999999999999999999999999999999999999999999999999999986 46889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCCccceehhcchhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043127 286 SKMLFFLSLFFFTSLVCRPALFKRSMRRFNVAWWAYSFPLTVLALASTEYAQEVKGGIANVLMLLLSALSALVAICLTVF 365 (390)
Q Consensus 286 a~~L~g~gl~~~~~~~~~~~~~~~~~~~F~~~wWAfTFPl~~~a~at~~l~~~~~~~~~~~l~~~l~~l~~~~~~~v~~~ 365 (390)
+..+|++|++|+++.+...++++| .||+++|||||||++++++++.++++..++..+++++.++.++++++|.++..|
T Consensus 227 ~~~l~~~~l~~~~~~l~~~~~~~~--~~F~~swWAfTFPl~A~~~at~~l~~~~~~~~~~~la~~~~~~~~~~~~~v~~~ 304 (324)
T PRK10764 227 AKMLFGYGLLQLLFLLRLMPWILS--QGFNASFWSFSFGVAALATTGLHLGHGSDNGFFHTLAVPLFIFANFIIALLLLR 304 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CCCCccHHHHccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876654444444 399999999999999999999999999999999999999999999999999999
Q ss_pred HH--HhcCCCCCCCCcc
Q 043127 366 SL--LNPKMLLPDNDPI 380 (390)
Q Consensus 366 tl--~~~g~l~~~~~~~ 380 (390)
|+ +++|+++..+++.
T Consensus 305 tl~~~~~g~l~~~~~~~ 321 (324)
T PRK10764 305 TLALLMQGKLLVRTERA 321 (324)
T ss_pred HHHHHHCCCccCCCCCC
Confidence 98 5899999876543
No 2
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=100.00 E-value=1.9e-52 Score=412.07 Aligned_cols=298 Identities=22% Similarity=0.232 Sum_probs=261.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhh
Q 043127 53 FHAGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTKMVKVEFL 132 (390)
Q Consensus 53 ~p~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~~~el~ 132 (390)
+||+||+++||||++|++|++.+++ .+.++.++++++++|+++|++++++++.|+.+||+++++|++
T Consensus 1 f~p~wF~~vMgtg~~s~~~~~~~~~-------------~~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~ 67 (320)
T TIGR00816 1 FPWGWFAIVLGTGGLALASLSYSFY-------------LPILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELK 67 (320)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhccc-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6899999999999999999988765 334688999999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHccccCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcccccchhhHHH
Q 043127 133 NHVGVNYLFAPWISWLLLLQSAPFVAPKEVSYLVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQISVIGNLVG 212 (390)
Q Consensus 133 hP~~~~f~~t~~ma~~~l~~~~~~~~~~~~~~~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp~Vg~iV~ 212 (390)
||++++|++|++|+++++ ++.........+..+||+++++++.+++...+++++++ +.+.|++||+|++|+||++++
T Consensus 68 ~p~~~~f~~t~~m~~~~l--~~~~~~~~~~~~~~lw~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~paw~lp~V~~~v~ 144 (320)
T TIGR00816 68 HPVLSSFIPLIPISTMLL--GIDFIIWGYPLALGLWYIGAIGQLLFSVIVPFYLFKNE-SIEIEHTHPGWYLPPVALIFI 144 (320)
T ss_pred CChhhhhhhHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccccCCchhhhcccHHHHH
Confidence 999999999999999986 33333333456778999999999999888888888664 356788999999999999999
Q ss_pred HhhhhhhcH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhC--chhH
Q 043127 213 AQAAANMGW---KECA---VCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASIAG--AFDT 284 (390)
Q Consensus 213 a~~g~~l~~---~~~~---~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~g--~~~~ 284 (390)
+.+|+.++. .+.. +.+||+|+++|+++++++++|+.+++++|++.+|++||.+||+|+++.|++++.+ +.+.
T Consensus 145 ~~~~~~l~~~~~~~~~~~~~~~~g~G~~l~l~i~~~~~~Rl~~~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~~~~~~~~ 224 (320)
T TIGR00816 145 SAAALAILPYLTHELTVLFYFGWGAGFFLYLSLEAVLLLRLRLHGLLPSALRPTMFINLAPIGVGIVALINIVNHGEFIT 224 (320)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhheeccHHHHHHHHHHHhhccchhh
Confidence 999887652 2344 4449999999999999999999999999999999999999999999999999532 2233
Q ss_pred -------HHHHHHHHHHHHHHHHHH-HhhhhhhccCCCccceehhcchhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 043127 285 -------ASKMLFFLSLFFFTSLVC-RPALFKRSMRRFNVAWWAYSFPLTVLALASTEYAQEVKGGIANVLMLLLSALSA 356 (390)
Q Consensus 285 -------~a~~L~g~gl~~~~~~~~-~~~~~~~~~~~F~~~wWAfTFPl~~~a~at~~l~~~~~~~~~~~l~~~l~~l~~ 356 (390)
++.++|++|+||+++++. ..++.| .+.||+++|||||||+|++++|+.++++..+++.++++|.++..+++
T Consensus 225 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~~F~~~wWA~tFPlg~~a~at~~l~~~~~~~~~~~~~~~~~~~~~ 303 (320)
T TIGR00816 225 IKEPFLILAIILWGFGLWQLLFAIRLLLWYVK-LKLPFAMGWWAFIFPLAAYANSTHLVYKGFDFKVFQYIGFGLYVFLN 303 (320)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccHHHHcChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788999999999998875 445544 23599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043127 357 LVAICLTVFSL 367 (390)
Q Consensus 357 ~~~~~v~~~tl 367 (390)
++|+++..+|+
T Consensus 304 ~~w~~~~~~tl 314 (320)
T TIGR00816 304 FFWAILLIRTV 314 (320)
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 3
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=100.00 E-value=8.1e-52 Score=408.31 Aligned_cols=302 Identities=29% Similarity=0.453 Sum_probs=248.4
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 043127 51 SRFHAGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTKMVKVE 130 (390)
Q Consensus 51 ~~~p~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~~~e 130 (390)
||+||+||+++||||++|++|+..+++ .+.++.++++++++++++|+++.++++.|+++|||++++|
T Consensus 1 k~~~~~~f~~~mGtg~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~e 67 (330)
T PF03595_consen 1 KHFPPAWFGMVMGTGGLSNLLYLLPYH-------------FGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAE 67 (330)
T ss_dssp --S-GGGGHHHHHHHHHHHHHHTTTTT-------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh-------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 799999999999999999999998765 2345899999999999999999999999999999999999
Q ss_pred hhCcccccccchHHHHHHHHHcccc-Cc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcccccchh
Q 043127 131 FLNHVGVNYLFAPWISWLLLLQSAP-FV-APKEVSYLVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQISVIG 208 (390)
Q Consensus 131 l~hP~~~~f~~t~~ma~~~l~~~~~-~~-~~~~~~~~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp~Vg 208 (390)
++||++++|++|++|++++++.... +. +.....++++||+++++++.+.+.++++++.++ +.+.|++||+|++|+||
T Consensus 68 l~~p~~~~f~~t~~m~~~~l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~p~w~lp~Vg 146 (330)
T PF03595_consen 68 LRHPVRSSFFPTFPMALMLLAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQ-PFKLEHINPSWFLPPVG 146 (330)
T ss_dssp HHSTTGGGGGGHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-S-SS-GGG--GGGHHHHTH
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccC-cccccccceeeeecchh
Confidence 9999999999999999998743222 21 124568899999999999999999998888764 35667899999999999
Q ss_pred hHHHHhhhhhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHh
Q 043127 209 NLVGAQAAANMG----------WKECAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASI 278 (390)
Q Consensus 209 ~iV~a~~g~~l~----------~~~~~~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l 278 (390)
+++++.+|+.++ ..+.++++||+|+++|+++.+++++|+++++.+|++++|+++|.+||+|+++.|++++
T Consensus 147 ~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l 226 (330)
T PF03595_consen 147 IMVSAVAGANLGPALPGAQALWIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSL 226 (330)
T ss_dssp HHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHh
Confidence 999999999887 4678999999999999999999999999999999999999999999999999999999
Q ss_pred hC--------------chhHHHHHHHHHHHHHHHHHHH-HhhhhhhccCCCccceehhcchhHHHHHHHHHHHHHhchhH
Q 043127 279 AG--------------AFDTASKMLFFLSLFFFTSLVC-RPALFKRSMRRFNVAWWAYSFPLTVLALASTEYAQEVKGGI 343 (390)
Q Consensus 279 ~g--------------~~~~~a~~L~g~gl~~~~~~~~-~~~~~~~~~~~F~~~wWAfTFPl~~~a~at~~l~~~~~~~~ 343 (390)
++ ..+.++.++|++|++++++++. ..+..|+. .||+++|||||||++++++|+.++++..+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~F~~~~Wa~tFP~~~~a~at~~l~~~~~~~~ 305 (330)
T PF03595_consen 227 GKAAVAFPPHGQILRGVADLFALLLWGFALWWFFLALLSLIRYLRRR-LPFSPSWWAFTFPLGAFALATLKLAQYLGSPF 305 (330)
T ss_dssp T-------------TT---HHHHHHHHHHHHHHHHHHHHHHHHTTT------GGGGGGHHHHHHHHHHHHHHTTSSHHHH
T ss_pred cccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCcchhHHhChHHHHHHHHHHHHHHhccHH
Confidence 84 2347788999999999998885 45555543 49999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043127 344 ANVLMLLLSALSALVAICLTVFSL 367 (390)
Q Consensus 344 ~~~l~~~l~~l~~~~~~~v~~~tl 367 (390)
+++++.++.++++++|+++..+|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~tl 329 (330)
T PF03595_consen 306 FRVLGLILLVLATLIWIYVLVRTL 329 (330)
T ss_dssp HHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999986
No 4
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=381.64 Aligned_cols=311 Identities=23% Similarity=0.358 Sum_probs=276.1
Q ss_pred HhhhhccCChhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 043127 46 LRSILSRFHAGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTK 125 (390)
Q Consensus 46 ~~~~l~~~p~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~ 125 (390)
+++++|++|++||+.+||||++|++|+.++.. +.+.+.++.++..++.++|+++.++++.|+++||+
T Consensus 2 ~~~~~~~~~~~~f~~~mg~~~~gl~~~~~~~~-------------~~~l~~~s~vl~~~~~~i~~l~~~~~i~k~i~y~~ 68 (329)
T COG1275 2 MRDKIRNFPPSWFASVMGTGGLGLALGLFSFS-------------FLLLRTLSYVLFYFALAIFFLLLIVWILKLIKYPN 68 (329)
T ss_pred CccccccCCHHHHhhcccHHHHHHHHHHhhhc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 56789999999999999999999999998765 34558999999999999999999999999999999
Q ss_pred HHHHHhhCcccccccchHHHHHHHHHcccc-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcccc
Q 043127 126 MVKVEFLNHVGVNYLFAPWISWLLLLQSAP-FVAPKEVSYLVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQI 204 (390)
Q Consensus 126 ~~~~el~hP~~~~f~~t~~ma~~~l~~~~~-~~~~~~~~~~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~l 204 (390)
++++|++||++++|++|++|+++++ ++. ........++++||+++++++.+.....+..++.+ +.+.|+++|+|++
T Consensus 69 ~~~~~l~~pv~~sf~~t~~ia~~~~--~~~~~~~~~~~~~~~lW~~~~~~~l~f~~~~~y~~~~~~-~~~~~~~~Psw~l 145 (329)
T COG1275 69 TVIADLNHPVVSSFVPTFPIATMLL--SSYLLYPGLPLLAYVLWWFGVALQLFFSAWFIYSLFRGK-KFELETITPSWFL 145 (329)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHH--HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccccCccceec
Confidence 9999999999999999999999986 333 34455678999999999999999988776666443 3567899999999
Q ss_pred cchhhHHHHhhhhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh--C
Q 043127 205 SVIGNLVGAQAAANMGW--KECAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASIA--G 280 (390)
Q Consensus 205 p~Vg~iV~a~~g~~l~~--~~~~~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~--g 280 (390)
|+||+++++.+++.++. .+.++.++|.|+..|+++++++++|++.++++|++.+|+.+|++||.|+.+.++..+. +
T Consensus 146 P~V~~~v~s~t~~~~~~~~~~~~~~~~~~g~~~~l~l~~iv~~r~~~~~~lp~~~~p~i~i~laP~~~~~~~~~~~~~~~ 225 (329)
T COG1275 146 PPVGIIVASLTASVLLGAYFVIGYVFFGAGFFSYLVLFPIVLYRLFTAGLLPPAARPTIFIQLAPIGLVGVGLLLIVNSG 225 (329)
T ss_pred cccHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCcchhhhccHHHHHHHHHHHhccC
Confidence 99999999999988876 7889999999999999999999999999999999999999999999999999998876 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH-HhhhhhhccCCCccceehhcchhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 043127 281 AFDTASKMLFFLSLFFFTSLVC-RPALFKRSMRRFNVAWWAYSFPLTVLALASTEYAQEVKGGIANVLMLLLSALSALVA 359 (390)
Q Consensus 281 ~~~~~a~~L~g~gl~~~~~~~~-~~~~~~~~~~~F~~~wWAfTFPl~~~a~at~~l~~~~~~~~~~~l~~~l~~l~~~~~ 359 (390)
..+.++.++||+|++++++++. ..+...| +||+++|||||||++++++++.++++..+...++.+|..+..++++.|
T Consensus 226 ~~~~~~~il~g~g~~~~~~~~~~~~~~~l~--~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~ 303 (329)
T COG1275 226 PSLTFVLILWGFGLLFLFFALLLLLRVLLR--LPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIW 303 (329)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999885 4552223 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HH--HhcCCCC
Q 043127 360 ICLTVF-SL--LNPKMLL 374 (390)
Q Consensus 360 ~~v~~~-tl--~~~g~l~ 374 (390)
+.+.++ |+ .++++..
T Consensus 304 ~~~lv~~t~~~~~k~~~~ 321 (329)
T COG1275 304 IVLLVAYTIRAIRKGKFL 321 (329)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999 54 3555554
No 5
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=97.98 E-value=0.0012 Score=65.19 Aligned_cols=205 Identities=16% Similarity=0.145 Sum_probs=123.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhC
Q 043127 54 HAGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTKMVKVEFLN 133 (390)
Q Consensus 54 p~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~~~el~h 133 (390)
.+-+.+..||+..+++.+..+..+ ....+..++|+++.++.+.+......++.++.+ .+.+|
T Consensus 74 ~~f~~t~~m~~~~l~~~~~~~~~~---------------~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~~---~~~~~ 135 (330)
T PF03595_consen 74 SSFFPTFPMALMLLAAFISPYGGP---------------WSPSLALVLWWIGVILHLVLSVIFVFRWFRKQP---FKLEH 135 (330)
T ss_dssp GGGGGHHHHHHHHHHHHHTTT--------------------HHHHHHHHHHHHHHHHHHHHHHTGGGGG-SS---S-GGG
T ss_pred cchHHHHHHHHHHHHHHHHhhhhh---------------hHHHHHHHHHHHHHHHHHHHHhhhheehhccCc---ccccc
Confidence 356778899999999887765211 125788889999988877766555554444322 34555
Q ss_pred cccccccchHHHHHHHHHccccCcC--------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccc
Q 043127 134 HVGVNYLFAPWISWLLLLQSAPFVA--------PKEVSYLVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQIS 205 (390)
Q Consensus 134 P~~~~f~~t~~ma~~~l~~~~~~~~--------~~~~~~~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp 205 (390)
..-+-+++.+....... .+....+ .....+..+|.+|..+.+......++|.+.++. .+++..|+-+++
T Consensus 136 ~~p~w~lp~Vg~~v~~~-~g~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~--~~~~~~p~~~I~ 212 (330)
T PF03595_consen 136 INPSWFLPPVGIMVSAV-AGANLGPALPGAQALWIIVISYFLFGIGFFLYLILFALVLYRLIFHGL--PPAALRPTLFIF 212 (330)
T ss_dssp --GGGHHHHTHHHHHHH-HHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----G-GGGGGGGGG
T ss_pred cceeeeecchhHHHHHH-HHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcccCCCeeee
Confidence 44444444433322221 1222222 123467788999999988888778888876642 345678888888
Q ss_pred chhhHHHHhhhhhhcH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHH
Q 043127 206 VIGNLVGAQAAANMGW----------------KECAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPS 269 (390)
Q Consensus 206 ~Vg~iV~a~~g~~l~~----------------~~~~~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~ 269 (390)
.-+.-+++.+...++. ...+..+++.|+..++...... .|..+++ .+-.|+.|-+.=|.+
T Consensus 213 ~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~F~~~~Wa~tFP~~ 288 (330)
T PF03595_consen 213 LGPPGLSALAYLSLGKAAVAFPPHGQILRGVADLFALLLWGFALWWFFLALLSL-IRYLRRR---LPFSPSWWAFTFPLG 288 (330)
T ss_dssp GHHHHHHHHHHHHHT-------------TT---HHHHHHHHHHHHHHHHHHHHH-HHHTTT--------GGGGGGHHHHH
T ss_pred cchHHHHHHHHHHhcccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccC---CCCCcchhHHhChHH
Confidence 7777776666544441 1256788888887765544443 4444333 567899999999999
Q ss_pred HHHHHHHHhhCchh
Q 043127 270 VASLAWASIAGAFD 283 (390)
Q Consensus 270 ~~~~a~l~l~g~~~ 283 (390)
..+.|-..+++..+
T Consensus 289 ~~a~at~~l~~~~~ 302 (330)
T PF03595_consen 289 AFALATLKLAQYLG 302 (330)
T ss_dssp HHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999888876433
No 6
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=97.78 E-value=0.0092 Score=58.98 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=120.0
Q ss_pred hhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhCc
Q 043127 55 AGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTKMVKVEFLNH 134 (390)
Q Consensus 55 ~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~~~el~hP 134 (390)
+-+.+..||+..+++.+..+. ...+..+|.++.++-+...+....++..+ ++ .+.+|.
T Consensus 73 ~f~~t~~m~~~~l~~~~~~~~-------------------~~~~~~lw~~~~~l~l~~~~~~~~~~~~~-~~--~~~~~~ 130 (320)
T TIGR00816 73 SFIPLIPISTMLLGIDFIIWG-------------------YPLALGLWYIGAIGQLLFSVIVPFYLFKN-ES--IEIEHT 130 (320)
T ss_pred hhhhHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--cccccC
Confidence 567788899999988877542 12445577777776555554445454443 21 344555
Q ss_pred ccccccchHHHHHHHHHccccCcCCh-hHHH---HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcccccchhhH
Q 043127 135 VGVNYLFAPWISWLLLLQSAPFVAPK-EVSY---LVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQISVIGNL 210 (390)
Q Consensus 135 ~~~~f~~t~~ma~~~l~~~~~~~~~~-~~~~---~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp~Vg~i 210 (390)
.-+-+++.++...... .+....+.. .... ..+|.+|....+......++|.+.++ ...++.-|+.+++.-+.-
T Consensus 131 ~paw~lp~V~~~v~~~-~~~~l~~~~~~~~~~~~~~~~g~G~~l~l~i~~~~~~Rl~~~~--~~p~~~~P~~~I~~gP~~ 207 (320)
T TIGR00816 131 HPGWYLPPVALIFISA-AALAILPYLTHELTVLFYFGWGAGFFLYLSLEAVLLLRLRLHG--LLPSALRPTMFINLAPIG 207 (320)
T ss_pred CchhhhcccHHHHHHH-HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccchhhhhhheeccHH
Confidence 5555555544333221 122221111 1122 33377777777766666777776553 344678899888877777
Q ss_pred HHHhhhhhhc----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh
Q 043127 211 VGAQAAANMG----WK-------ECAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASIA 279 (390)
Q Consensus 211 V~a~~g~~l~----~~-------~~~~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~ 279 (390)
+++.+...+. .. ..+..+|+.|....++..... .|..+ -+.+-.|+.|=+.=|.+..+.+-..++
T Consensus 208 ~~~~a~~~l~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~-~~~~~---~~~~F~~~wWA~tFPlg~~a~at~~l~ 283 (320)
T TIGR00816 208 VGIVALINIVNHGEFITIKEPFLILAIILWGFGLWQLLFAIRLL-LWYVK---LKLPFAMGWWAFIFPLAAYANSTHLVY 283 (320)
T ss_pred HHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---cCCCCCccHHHHcChHHHHHHHHHHHH
Confidence 7666554421 01 156788989987776655543 34432 235688999999999999888877776
Q ss_pred C
Q 043127 280 G 280 (390)
Q Consensus 280 g 280 (390)
.
T Consensus 284 ~ 284 (320)
T TIGR00816 284 K 284 (320)
T ss_pred H
Confidence 4
No 7
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.23 Score=49.54 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhCcccccccchHHHHHHHHHccccCcCChhHHHHHHHHHHHHH
Q 043127 95 PTAFLALWFLALVTLILLSFLYILRCLFFTKMVKVEFLNHVGVNYLFAPWISWLLLLQSAPFVAPKEVSYLVLWWIFAVP 174 (390)
Q Consensus 95 ~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~~~el~hP~~~~f~~t~~ma~~~l~~~~~~~~~~~~~~~~lw~i~~~l 174 (390)
...+..+|.++++.-+.+...+..+..+.. +-|++|..-+=+.|.++...... .+..........+...+++|...
T Consensus 103 ~~~~~~lW~~~~~~~l~f~~~~~y~~~~~~---~~~~~~~~Psw~lP~V~~~v~s~-t~~~~~~~~~~~~~~~~~~g~~~ 178 (329)
T COG1275 103 PLLAYVLWWFGVALQLFFSAWFIYSLFRGK---KFELETITPSWFLPPVGIIVASL-TASVLLGAYFVIGYVFFGAGFFS 178 (329)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcccccCccceeccccHHHHHHH-HhhhHhHHHHHHHHHHHHHHHHH
Confidence 578889999997777766666666655542 34667777776776666554432 12222221234566778888877
Q ss_pred HHHHHHHHHHHHhhccccccccccCCcccccchh--hHHHHhhhhhh-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043127 175 VVALDVKIYGQWFTKGKKFLSTVANPTSQISVIG--NLVGAQAAANM-G-WKECAVCLFSLGMVHYLVLFVTLYQRLSGG 250 (390)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp~Vg--~iV~a~~g~~l-~-~~~~~~~~~giGl~~~l~l~~lil~Rl~~~ 250 (390)
.++.-....+|.++.+. ......|+-.+...+ ...++.....- + ....+.+++|.|...+++.......|.
T Consensus 179 ~l~l~~iv~~r~~~~~~--lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~~~~il~g~g~~~~~~~~~~~~~~~--- 253 (329)
T COG1275 179 YLVLFPIVLYRLFTAGL--LPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLTFVLILWGFGLLFLFFALLLLLRVL--- 253 (329)
T ss_pred HHHHHHHHHHHHHHccC--CCcccCCcchhhhccHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 77666666666665432 223456655444433 32222222221 2 234678889999988877666666622
Q ss_pred CCCCCCcchhHHHhhhHHHHHHHHHHHhhC-----chhHHHHHHHHHHHHHHHHHH-H-Hhhhhhh
Q 043127 251 NRLPAMLRPVFFLFFAAPSVASLAWASIAG-----AFDTASKMLFFLSLFFFTSLV-C-RPALFKR 309 (390)
Q Consensus 251 ~~~p~~~~Ps~~I~laP~~~~~~a~l~l~g-----~~~~~a~~L~g~gl~~~~~~~-~-~~~~~~~ 309 (390)
....-.|+.|-+.=|.+..+.+-..+.. ..+.++..+..++.....++. . +.+..+|
T Consensus 254 --l~~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~lv~~t~~~~~k 317 (329)
T COG1275 254 --LRLPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIWIVLLVAYTIRAIRK 317 (329)
T ss_pred --hcCCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999988888777764 234556666666665555444 3 4444444
No 8
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=97.00 E-value=0.23 Score=49.33 Aligned_cols=190 Identities=14% Similarity=0.058 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhCccc
Q 043127 57 YFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALVTLILLSFLYILRCLFFTKMVKVEFLNHVG 136 (390)
Q Consensus 57 ~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr~~~~~~~~~~el~hP~~ 136 (390)
..+..|++-.++..++.+. ..++..+|+++.++-+.+......|+++++ .+.+|..-
T Consensus 83 ~~t~~ms~~ll~~~~~~~~-------------------~~~a~~lW~~g~~l~l~~~~~~~~~~~~~~----~~~~~~~P 139 (324)
T PRK10764 83 VSLIPITTMLVAIGLVPYS-------------------RPLAVVLFSFGVVGQLAFAAWRTAGLWRGG----HPEEATTP 139 (324)
T ss_pred hhHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccCCh
Confidence 3455666666666655421 346677788888776666666666666552 46677666
Q ss_pred ccccchHHHHHHHHHccccCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcccccchhhHHHHhhh
Q 043127 137 VNYLFAPWISWLLLLQSAPFVAPKEVSYLVLWWIFAVPVVALDVKIYGQWFTKGKKFLSTVANPTSQISVIGNLVGAQAA 216 (390)
Q Consensus 137 ~~f~~t~~ma~~~l~~~~~~~~~~~~~~~~lw~i~~~l~l~~~~~~~~~~~~~~~~~~~~~~~psW~lp~Vg~iV~a~~g 216 (390)
+-+++.++..+..-..+... + ....++.+|++|....+.+...+++|...++ ...++.-|+-++...+.-++..+-
T Consensus 140 aW~ip~V~~~~v~~~a~~~~-~-~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~--~lp~~~~P~l~I~lAP~~~~~~a~ 215 (324)
T PRK10764 140 GLYLPTVANNFVSAMALGAL-G-YHDAGLLFLGAGVFSWLSLEPVILQRLRSSG--ELPTALRPSLGIQLAPAFVGCSAY 215 (324)
T ss_pred hhhhccchhhhHHHhhcccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhhHHHHHHHH
Confidence 66666653321110012222 1 1346788899999888877777778877553 344567788777766665555544
Q ss_pred hhhc--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh
Q 043127 217 ANMG--W-KECAVCLFSLGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASIA 279 (390)
Q Consensus 217 ~~l~--~-~~~~~~~~giGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~ 279 (390)
-.++ . ...+..++++|++.++.+. .++.+. ...+-.|+.|=+.=|.+....+-..++
T Consensus 216 l~~~~~~~~~~~~~l~~~~l~~~~~~l----~~~~~~--~~~~F~~swWAfTFPl~A~~~at~~l~ 275 (324)
T PRK10764 216 LSVNGGEGDTLAKMLFGYGLLQLLFLL----RLMPWI--LSQGFNASFWSFSFGVAALATTGLHLG 275 (324)
T ss_pred HHHcCcchhHHHHHHHHHHHHHHHHHH----HHHHHH--cCCCCCccHHHHccHHHHHHHHHHHHH
Confidence 3332 2 2356778888887765421 111111 123577889988888877777666655
No 9
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=42.46 E-value=62 Score=33.29 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=32.7
Q ss_pred cccccCCCCchhhhhhhhhhHhhhhccCChhhHHHHHHHHHHHHHHHHcc
Q 043127 26 ATKNNQHSLPIVVARRIKESLRSILSRFHAGYFRISLSLGGQALLWKTLI 75 (390)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~F~~vMGtg~La~~~~~~~ 75 (390)
+.+-|++++|.-. .|++.+..-.++.+|++.|++++|....
T Consensus 167 ~~k~~~~~YP~G~---------~r~EtvG~i~~S~iMa~agv~ii~sSl~ 207 (412)
T KOG1485|consen 167 AKKKPTYEYPRGR---------GRVETVGLIAVSVIMAMAGVQIIWSSLR 207 (412)
T ss_pred hcCCChhhCCCCC---------CcccchhHHHHHHHHHHHHHHHHHHhHH
Confidence 3555677777655 4478889999999999999999998754
No 10
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.99 E-value=16 Score=35.63 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCccceehh-cchhHHHHHHHHHH--HHHhchhHHHHHHH---HHHHHHHHHHHHHH
Q 043127 313 RFNVAWWAY-SFPLTVLALASTEY--AQEVKGGIANVLML---LLSALSALVAICLT 363 (390)
Q Consensus 313 ~F~~~wWAf-TFPl~~~a~at~~l--~~~~~~~~~~~l~~---~l~~l~~~~~~~v~ 363 (390)
.+--+||-. .|=++ +.+|...+ +-.....+|.++.. .++.+++++|.|+.
T Consensus 131 ~~GAs~WtiLaFcLA-F~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H 186 (381)
T PF05297_consen 131 ELGASFWTILAFCLA-FLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVH 186 (381)
T ss_dssp ---------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678888842 34342 33443332 22223344444432 34677788888885
No 11
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.23 E-value=67 Score=27.41 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=20.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043127 84 DTARHVLRMFHPTAFLALWFLALVTLILLSFLYILR 119 (390)
Q Consensus 84 ~~~~~~~~~~~~~i~~il~~la~~l~~~l~~~~~lr 119 (390)
+++.|+|.+ +..++.++.+++-++..++++.|++|
T Consensus 55 ~ql~h~fs~-~~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 55 SQLVHRFSE-PAIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp -SSSSSSS--TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccc-cceeehhHHHHHHHHHHHHHHHHHHH
Confidence 334444443 25667777777777766666666654
No 12
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=25.19 E-value=2e+02 Score=22.53 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=38.2
Q ss_pred CCCCCCCcchhHHHhhhHHHHHHHHHHHhhC------ch--------hHHHHHHHHHHHHHHHHH
Q 043127 250 GNRLPAMLRPVFFLFFAAPSVASLAWASIAG------AF--------DTASKMLFFLSLFFFTSL 300 (390)
Q Consensus 250 ~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~g------~~--------~~~a~~L~g~gl~~~~~~ 300 (390)
..+.|++..|.+.+.+-..|+...|+..+.+ +. ...+.+..|+|..+.++.
T Consensus 8 ~sPV~p~~~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL~ 72 (77)
T PF05251_consen 8 TSPVNPALYPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLLW 72 (77)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4677889999999999999999888887642 11 145667888888776654
No 13
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=2.3e+02 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHcccC
Q 043127 55 AGYFRISLSLGGQALLWKTLIEP 77 (390)
Q Consensus 55 ~~~F~~vMGtg~La~~~~~~~~~ 77 (390)
..|-..+.=+|++|..+++...+
T Consensus 36 l~wl~~~vllg~l~~~l~n~~~~ 58 (126)
T COG5264 36 LSWLSVTVLLGGLGFALYNSGDR 58 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 34555555567788888886654
No 14
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.15 E-value=4.2e+02 Score=21.71 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043127 231 LGMVHYLVLFVTLYQRLSGGNRLPAMLRPVFFLFFAAPSVASLAWASIAGAFDTASKMLFFLSLFFFTSLVCRPALFKR 309 (390)
Q Consensus 231 iGl~~~l~l~~lil~Rl~~~~~~p~~~~Ps~~I~laP~~~~~~a~l~l~g~~~~~a~~L~g~gl~~~~~~~~~~~~~~~ 309 (390)
+++....+-..+.++|+..++..|++..-.-. ++-..++..+......+.+.+......++++-+.-.+...|+..|
T Consensus 12 ~a~~~l~~a~~l~l~Rlv~GPt~~DRivAlD~--l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~~ 88 (100)
T PRK12657 12 SALIIFGIALIICLFRLIKGPTTADRVVTFDT--TSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH--HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34333334444567899988888877643332 233334444444433222334444555666666655555565544
No 15
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=22.67 E-value=1.8e+02 Score=27.57 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=31.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 043127 53 FHAGYFRISLSLGGQALLWKTLIEPIDVDDTDTARHVLRMFHPTAFLALWFLALV---TLILLSFLYILRCLFF 123 (390)
Q Consensus 53 ~p~~~F~~vMGtg~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~la~~---l~~~l~~~~~lr~~~~ 123 (390)
=|.++...+||.+.+-......-.+ -+|..+-..++++++. +..++.++-++|++.|
T Consensus 105 e~~~~~~~l~~~~~~~~v~a~~lFP--------------lWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf 164 (224)
T PF03839_consen 105 EPSPLMQYLIGALLLVGVIAICLFP--------------LWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILF 164 (224)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhh--------------cChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677887788776665554433222 1355555555665543 3344445556676665
Done!