Query 043127
Match_columns 390
No_of_seqs 141 out of 910
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 23:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 5.2 7.2E+02 0.053 20.0 13.4 18 242-259 430-447 (447)
2 d1v54d_ f.23.1.1 (D:) Mitochon 4.5 5.3E+02 0.039 19.4 5.2 25 233-257 84-108 (144)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 2.5 8.2E+02 0.06 16.3 7.6 21 138-159 40-60 (103)
4 d2i5nm1 f.26.1.1 (M:1-323) M ( 2.0 1.4E+03 0.1 19.0 5.7 47 313-360 163-215 (323)
5 d3dtua1 f.24.1.1 (A:14-551) Ba 1.9 1.6E+03 0.12 20.0 6.4 46 343-388 482-532 (538)
6 d1fnla1 b.1.1.4 (A:3-86) Fc ga 1.7 4.6E+02 0.033 16.6 1.5 13 5-17 1-13 (84)
7 d1ghha_ d.57.1.1 (A:) DNA dama 1.5 5.6E+02 0.04 17.3 1.5 25 30-54 9-34 (81)
8 d2rh3a1 a.43.1.10 (A:82-202) V 1.5 3.5E+02 0.025 19.4 0.3 22 17-38 9-30 (121)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 1.5 3.8E+02 0.028 18.2 0.5 21 167-187 22-42 (91)
10 d3chbd_ b.40.2.1 (D:) Cholera 1.4 6.3E+02 0.046 17.2 1.7 25 27-51 49-73 (103)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.21 E-value=7.2e+02 Score=20.04 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=8.3
Q ss_pred HHHHHHHcCCCCCCCcch
Q 043127 242 TLYQRLSGGNRLPAMLRP 259 (390)
Q Consensus 242 lil~Rl~~~~~~p~~~~P 259 (390)
....+-.++++..++..|
T Consensus 430 ~~~~~~~r~~~~~~e~~P 447 (447)
T d1pw4a_ 430 VMIGEKRRHEQLLQELVP 447 (447)
T ss_dssp HHHHHHHHHHGGGGGSCC
T ss_pred HHHhccccHHHHHHhCCC
Confidence 333343444445555554
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.54 E-value=5.3e+02 Score=19.38 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCc
Q 043127 233 MVHYLVLFVTLYQRLSGGNRLPAML 257 (390)
Q Consensus 233 l~~~l~l~~lil~Rl~~~~~~p~~~ 257 (390)
+++.+.+...++.|....+++|..+
T Consensus 84 ~~i~~s~~i~~~~r~~v~p~~P~T~ 108 (144)
T d1v54d_ 84 FFIGFTALLLIWEKHYVYGPIPHTF 108 (144)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3334444455567777666666543
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.53 E-value=8.2e+02 Score=16.25 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=9.5
Q ss_pred cccchHHHHHHHHHccccCcCC
Q 043127 138 NYLFAPWISWLLLLQSAPFVAP 159 (390)
Q Consensus 138 ~f~~t~~ma~~~l~~~~~~~~~ 159 (390)
++.-++.-+..++ ....|++.
T Consensus 40 s~~~aly~~~vT~-tTvGYGDi 60 (103)
T d1r3jc_ 40 TYPRALWWSVETA-TTVGYGDL 60 (103)
T ss_dssp SHHHHHHHHHHHH-TTCCCSSS
T ss_pred chhhhhhhheeee-cccccCcc
Confidence 4444555555553 12335543
No 4
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=2.01 E-value=1.4e+03 Score=19.03 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=30.7
Q ss_pred CCccceehhcchhHHHHHHH------HHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 043127 313 RFNVAWWAYSFPLTVLALAS------TEYAQEVKGGIANVLMLLLSALSALVAI 360 (390)
Q Consensus 313 ~F~~~wWAfTFPl~~~a~at------~~l~~~~~~~~~~~l~~~l~~l~~~~~~ 360 (390)
|.-+|=|+--||.|+++--- +++++ .....++.++...+.-.++...
T Consensus 163 PilmGsWsea~PyGIf~HLDWt~~fs~~ygN-~~YNPfHmLsIaFlygsaLlfA 215 (323)
T d2i5nm1 163 PTLVGSWSEGVPFGIWPHIDWLTAFSIRYGN-FYYCPWHGFSIGFAYGCGLLFA 215 (323)
T ss_dssp HHHHTCGGGSCCBSHHHHHHHHHHHHHHTTC-GGGCHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhccccchhhHHHHHHHHHHHhcc-eeeCHHHHHHHHHHHHHHHHHH
Confidence 67788899999999987432 22222 2345788888777665555443
No 5
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.89 E-value=1.6e+03 Score=20.00 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC---cccccc--cCCC
Q 043127 343 IANVLMLLLSALSALVAICLTVFSLLNPKMLLPDND---PIASLH--IDSP 388 (390)
Q Consensus 343 ~~~~l~~~l~~l~~~~~~~v~~~tl~~~g~l~~~~~---~~~~~~--~~~~ 388 (390)
.+..+|.++..+..++..++.++++..++|.-.+|. .+.+|. .+||
T Consensus 482 ~i~tiG~~i~~~g~l~f~~~~~~s~~~g~~~~~~~~w~~~a~tlEW~~~sp 532 (538)
T d3dtua1 482 FVSSLGAFLSFASFLFFLGVIFYTLTRGARVTANNYWNEHADTLEWTLTSP 532 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSSCSSCTTCCSGGGGSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCCcCCCCCCcccCCCCC
Confidence 445666667777777777788888765555444332 366664 4444
No 6
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=1.74 E-value=4.6e+02 Score=16.64 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=9.7
Q ss_pred cCCCCCceEEEec
Q 043127 5 TQGSQSQIELTIL 17 (390)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (390)
|++|+|.|.+++.
T Consensus 1 e~lPkpvi~~~P~ 13 (84)
T d1fnla1 1 EDLPKAVVFLEPQ 13 (84)
T ss_dssp CCCCCCEEEEESC
T ss_pred CCCCCCEEEECCC
Confidence 5788888877764
No 7
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=1.51 E-value=5.6e+02 Score=17.30 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=17.1
Q ss_pred cCCCCchhhhhhhhhhHhhhhc-cCC
Q 043127 30 NQHSLPIVVARRIKESLRSILS-RFH 54 (390)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~l~-~~p 54 (390)
|+++.|....+-+..++.+|+. +||
T Consensus 9 K~~~lp~ga~~aL~~EL~kRl~~~fp 34 (81)
T d1ghha_ 9 KTSPLPAGAIDALAGELSRRIQYAFP 34 (81)
T ss_dssp TTSCCCTTHHHHHHHHHHHHHHHHCS
T ss_pred cccCCCchHHHHHHHHHHHHHHhhCC
Confidence 5678887777777776766654 444
No 8
>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=1.47 E-value=3.5e+02 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=15.8
Q ss_pred cCCCCcccccccccCCCCchhh
Q 043127 17 LPTPTIRTIATKNNQHSLPIVV 38 (390)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~ 38 (390)
+|+|.++++-|+---|.++..+
T Consensus 9 pPAp~vSk~yD~Lilqys~sks 30 (121)
T d2rh3a1 9 PPAPEVSKIYDNLILQYSPSKS 30 (121)
T ss_dssp CCCTTSCHHHHHHTTTSCHHHH
T ss_pred CCCccHHHHHHHHHHHhCchhH
Confidence 5778888877776666666655
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=1.46 E-value=3.8e+02 Score=18.18 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 043127 167 LWWIFAVPVVALDVKIYGQWF 187 (390)
Q Consensus 167 lw~i~~~l~l~~~~~~~~~~~ 187 (390)
+|...++...+....++..|.
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~r 42 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWK 42 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhee
Confidence 333333333333433443333
No 10
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=1.43 E-value=6.3e+02 Score=17.16 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=13.7
Q ss_pred ccccCCCCchhhhhhhhhhHhhhhc
Q 043127 27 TKNNQHSLPIVVARRIKESLRSILS 51 (390)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~l~ 51 (390)
|-+-..+-|+.||.+-.|+|++-+|
T Consensus 49 qvevpgsqh~~sqk~~~ermkdtlr 73 (103)
T d3chbd_ 49 QVEVPGSQHIDSQKKAIERMKDTLR 73 (103)
T ss_dssp EECCCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCcchhhhhhhhHHHHHHHHHH
Confidence 3344455667777655555555443
Done!