BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043128
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 70 IHEALDSYDFELLKLLLDESNVTXXXXXXXXXXXXXCSPKVFKEVLNM---DSAGLNLKD 126
+H A ++ E++KLL+ + + KEV+ + A +N KD
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 127 ARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICR 170
+ G T LH AA V+ L+SKG + + SDG+T + + R
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 70 IHEALDSYDFELLKLLLDESNVTXXXXXXXXXXXXXCSPKVFKEVLNM---DSAGLNLKD 126
+H A ++ E++KLLL + + KE++ + A N KD
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 127 ARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICR 170
+ G T LH AA ++ LLSKG + + SDG+T + + R
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 123 NLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAV 166
N D+ G T LH AA ++ LLSKG + SDG+T +
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 55 NIAEVDPMHATRVRGIHEALDSYDFELLKLLLDESNVTXXXXXXXXXXXXXCSPKVFKEV 114
N A+V+ + +H A ++ E++KLLL + + KEV
Sbjct: 26 NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 85
Query: 115 LNM---DSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICR 170
+ + A N KD+ G T LH+AA V+ LLS+G + + SDG+T + + R
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 70 IHEALDSYDFELLKLLLDESNVTXXXXXXXXXXXXXCSPKVFKEVLNM---DSAGLNLKD 126
+H A E++KLL+ + + + KE++ + A +N KD
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 127 ARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICR 170
+ G T LH AA+ ++ L+SKG + + SDG+T + + R
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
EVL A +N KD G+T LH+AAR ++ LL G + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
+L + A +N KD G+T LH+AAR ++ LL G + DG T + + R
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQT 164
EVL A +N KD G+T LH+AAR ++ LL G + G+T
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
EVL A +N KD G+T LH+AAR ++ LL G + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
+L + A +N KD G+T LH+AAR ++ LL G + DG T + + R
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
EVL A +N KD G+T LH+AAR ++ LL G + G+T + R
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIR 143
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
EVL A +N KD G+T LH+AAR ++ LL G + DG T + + R
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
+L + A +N KD G+T LH+AAR ++ LL G + DG T + + R
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL A +N KD G+T LH+AAR ++ LL G + G+TA I
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
EVL + A +N KD+ G T LH+AARR ++ LL G + + S G T + + +
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL + A +N D+ G T LH+AA+R ++ LL G + G+TA I
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAI 168
+L + A +N KD G+T LH+AAR ++ LL G + G+TA I
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 120 AGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
A +N KD G T LH+AAR V+ LL G + +G+T + + R
Sbjct: 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 120 AGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGG 153
A +N KD G T LH+AAR V+ LL G
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.0 bits (71), Expect = 0.54, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 120 AGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
A +N + G+T LH+AA+ ++ LL+KG + + DG T + ++
Sbjct: 33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 118 DSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
+ L+ K A G+T LH AA +P L LL G+TA+ I R+
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRMT 173
+L + A +N D GHT LH+AA ++ LL G + T + G+T + +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPL----HLA 87
Query: 174 RRKDYIEAT----KQGQETN 189
D++E K G + N
Sbjct: 88 AWADHLEIVEVLLKHGADVN 107
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
+L + A +N D +G T LH+AA P ++ LL G + +DG T + +
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL A +N +DA G T LH+AA R ++ LL G + G+TA I
Sbjct: 97 EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|2R0F|A Chain A, Ligand Free Structure Of Fungal Lectin Cgl3
pdb|2R0F|B Chain B, Ligand Free Structure Of Fungal Lectin Cgl3
pdb|2R0H|A Chain A, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
pdb|2R0H|B Chain B, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
pdb|2R0H|C Chain C, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
pdb|2R0H|D Chain D, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
Length = 164
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 117 MDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKG 152
+D+ +NL +A+G +LH+ RR+E A + + G
Sbjct: 43 IDNTNVNLINAKGDVLLHIGIRRRENAFVFNSIPYG 78
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL + A +N KD G T LH+AA R ++ LL G + G+TA I
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 118 DSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRMTRRK 176
+ L+ K A G+T LH AA +P L LL G+TA+ I R+ ++
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 273
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL + A +N D GHT LH+AA ++ LL G + G+TA I
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 125 KDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRMTRRKDYIE 180
KDA G T LH+AA++ V+ LLS G DG I + D ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAI 168
+L + A + KD G T LH+AAR V+ LL G + G+TA I
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 119 SAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRMTRRKDY 178
A +N KD G T LH+AAR V+ LL G + +G+T + + R +
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL----HLAARNGH 80
Query: 179 IEATKQGQETNKD 191
+E K E D
Sbjct: 81 LEVVKLLLEAGAD 93
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 119 SAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
A +N KD G T LH+AAR V+ LL G + +G+T + + R
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAI 168
+L + A + KD G T LH+AAR V+ LL G G+TA I
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRM 172
EVL A ++ D G+T LH+AA ++ LL G + SDG T + + +
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW 123
Query: 173 TRRKDYIEAT----KQGQETN 189
Y+E K G + N
Sbjct: 124 G----YLEIVEVLLKHGADVN 140
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL A +N D GHT LH+AA+ ++ LL G + G+TA I
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRM 172
EVL + A +N D G T LH+AA ++ LL G + +DG T + + +
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY 123
Query: 173 TRRKDYIEATKQGQETN 189
+ K G + N
Sbjct: 124 GHLEIVEVLLKHGADVN 140
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRM 172
EVL + A +N D+ G T LH+AA R V+ LL G + +G T + + +
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Query: 173 TRRKDYIEATKQGQETN 189
+ K G + N
Sbjct: 124 GHLEIVEVLLKHGADVN 140
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 118 DSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRRMTR 174
++A NL GHT LH+AAR ++ LL K + T G T + + + +
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 129 GHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAICRR 171
G+T LH+AA++ + V +LL GG A+ + G T + + +
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
+L + A +N D +G+T LH+AA ++ LL G + +DG T + +
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 114 VLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQT 164
+L + A +N D G T LH+AA+R ++ LL G + + S G+T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL A +N KD G T LH+AA ++ LL G + G+TA I
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 113 EVLNMDSAGLNLKDARGHTVLHVAARRKEPAVLVTLLSKGGCASETTSDGQTAVAIC 169
EVL A +N D +G+T LH+AA ++ LL G + G+TA I
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,046,319
Number of Sequences: 62578
Number of extensions: 259062
Number of successful extensions: 759
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 102
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)