BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043130
         (157 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C3LLU1|BTUD_VIBCM Vitamin B12 import ATP-binding protein BtuD OS=Vibrio cholerae
           serotype O1 (strain M66-2) GN=btuD PE=3 SV=1
          Length = 251

 Score = 30.0 bits (66), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 114 NTRPSFALGVLALIALSVPTSAAVLC 139
           N +PSF L V   +ALSVP + A+ C
Sbjct: 78  NNKPSFQLHVFQYLALSVPANVALEC 103


>sp|Q9KSL1|BTUD_VIBCH Vitamin B12 import ATP-binding protein BtuD OS=Vibrio cholerae
           serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
           GN=btuD PE=3 SV=1
          Length = 251

 Score = 30.0 bits (66), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 114 NTRPSFALGVLALIALSVPTSAAVLC 139
           N +PSF L V   +ALSVP + A+ C
Sbjct: 78  NNKPSFQLHVFQYLALSVPANVALEC 103


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,570,808
Number of Sequences: 539616
Number of extensions: 2340081
Number of successful extensions: 5633
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5631
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)