Query 043130
Match_columns 157
No_of_seqs 47 out of 49
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 23:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v7mv_ a.26.1.2 (V:) Thrombop 33.3 24 0.0017 25.8 4.3 56 65-120 5-76 (145)
2 d1y7ya1 a.35.1.3 (A:5-73) Rest 32.8 15 0.0011 21.8 2.6 35 60-94 4-47 (69)
3 d1f46a_ d.129.4.1 (A:) Cell-di 29.4 14 0.00099 25.7 2.2 21 55-75 108-136 (139)
4 d1w74a_ b.62.1.1 (A:) Peptidyl 26.8 7.5 0.00055 27.0 0.4 16 56-72 134-150 (171)
5 d2vvpa1 c.121.1.1 (A:3-158) Al 17.2 33 0.0024 24.5 2.3 20 66-85 136-155 (156)
6 d2croa_ a.35.1.2 (A:) cro 434 16.0 15 0.0011 21.6 0.0 33 63-95 1-42 (65)
7 d1m70a2 a.3.1.4 (A:93-190) Cyt 16.0 69 0.005 20.1 3.5 52 56-110 44-96 (98)
8 d2c3ba1 b.62.1.1 (A:1-171) Cyc 15.8 14 0.001 25.7 -0.1 13 56-68 133-146 (171)
9 d1b0na2 a.35.1.3 (A:1-68) SinR 15.8 24 0.0017 20.7 1.0 40 68-107 4-56 (68)
10 d2iu5a2 a.121.1.1 (A:72-180) T 15.8 24 0.0018 24.3 1.1 22 82-103 55-77 (109)
No 1
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.31 E-value=24 Score=25.77 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcC----------------CCCCchHHHHHhhhccchhHHHHHHHHHHHHHhhcCchHH
Q 043130 65 VLRKRIHEMKMIERNY----------------EPPENWMEWEKKYYTGYDSYICEAMGVLQAQLMNTRPSFA 120 (157)
Q Consensus 65 VLRkRI~Emkm~E~~y----------------e~P~~WmeWEK~~y~~Y~sdVc~a~g~LQ~~LMntRP~vA 120 (157)
||-|=|+|.|-+|..- ..--+.-+|||+--..=..+|-.++.+|+--.+..|..++
T Consensus 5 VL~~~i~EA~dae~~~~~C~e~~~L~~~v~vP~t~v~f~~Wk~~~~~~ka~EV~~gL~LL~eav~~aq~~l~ 76 (145)
T d1v7mv_ 5 VLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLG 76 (145)
T ss_dssp HHHHHHHHHHHHHHGGGSSSSCCCCSSCEEEECCCCCCHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCceeeCcceeeHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 7889999999998432 1224789999998776677888888888877777777665
No 2
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=32.77 E-value=15 Score=21.82 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=26.7
Q ss_pred ccchHHHHHHHHHHHH---------HHhcCCCCCchHHHHHhhh
Q 043130 60 DENMIVLRKRIHEMKM---------IERNYEPPENWMEWEKKYY 94 (157)
Q Consensus 60 DE~MiVLRkRI~Emkm---------~E~~ye~P~~WmeWEK~~y 94 (157)
+.+++.+-+||+++|. +|...-.++.+..||+--.
T Consensus 4 ~~~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~ 47 (69)
T d1y7ya1 4 YADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHhHhCCCHHHHHHHHCCCC
Confidence 4578889999999995 3555667888888888544
No 3
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.37 E-value=14 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=14.7
Q ss_pred CCCccccch--------HHHHHHHHHHHH
Q 043130 55 RHRLVDENM--------IVLRKRIHEMKM 75 (157)
Q Consensus 55 gg~LVDE~M--------iVLRkRI~Emkm 75 (157)
||.|+||+. --+|.||+|.+.
T Consensus 108 ~g~l~D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 108 GGVVLDDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp TCEEECTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 358888875 456778887764
No 4
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.75 E-value=7.5 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.9
Q ss_pred CCccc-cchHHHHHHHHH
Q 043130 56 HRLVD-ENMIVLRKRIHE 72 (157)
Q Consensus 56 g~LVD-E~MiVLRkRI~E 72 (157)
|++|| |||-||++ |.+
T Consensus 134 G~Vv~geGmdvl~~-I~~ 150 (171)
T d1w74a_ 134 GEVIDAESQRVVEA-ISK 150 (171)
T ss_dssp EEECSHHHHHHHHH-HHT
T ss_pred EEEeccccHHHHHH-HHc
Confidence 69998 99999986 543
No 5
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.18 E-value=33 Score=24.51 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCCCCc
Q 043130 66 LRKRIHEMKMIERNYEPPEN 85 (157)
Q Consensus 66 LRkRI~Emkm~E~~ye~P~~ 85 (157)
=-+||..|...|+.|+.|+.
T Consensus 136 h~~Rv~ki~~~e~~~~~~~~ 155 (156)
T d2vvpa1 136 HQRRIDILAEYERTHEAPPV 155 (156)
T ss_dssp HHHHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 35899999999999988763
No 6
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=16.03 E-value=15 Score=21.60 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHH---------HHhcCCCCCchHHHHHhhhc
Q 043130 63 MIVLRKRIHEMKM---------IERNYEPPENWMEWEKKYYT 95 (157)
Q Consensus 63 MiVLRkRI~Emkm---------~E~~ye~P~~WmeWEK~~y~ 95 (157)
|-.+..||++.|. +|.-.-.++.+..||+.-.+
T Consensus 1 M~~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~ 42 (65)
T d2croa_ 1 MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK 42 (65)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHCcCHhHHHHHHCCCCC
Confidence 4457889999885 35666778888888886553
No 7
>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}
Probab=16.00 E-value=69 Score=20.14 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=34.5
Q ss_pred CCccccchHHHHHHHHHHHHHHhcCCCCCchHHHHHhhhccc-hhHHHHHHHHHHH
Q 043130 56 HRLVDENMIVLRKRIHEMKMIERNYEPPENWMEWEKKYYTGY-DSYICEAMGVLQA 110 (157)
Q Consensus 56 g~LVDE~MiVLRkRI~Emkm~E~~ye~P~~WmeWEK~~y~~Y-~sdVc~a~g~LQ~ 110 (157)
.+|.--.-.-|.++++..|.-++...+|..=|. .+...+ +.|+-+++.++++
T Consensus 44 P~L~G~~~~Yl~~qL~~~~~g~r~~~~~~~~M~---~~~~~lsd~di~~la~Yias 96 (98)
T d1m70a2 44 PKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMR---GVAAKLSNKDIEALSSYIQG 96 (98)
T ss_dssp CCCTTCCHHHHHHHHHHHHHTSCCTTTTTCHHH---HHHTTCCHHHHHHHHHHHHT
T ss_pred CccccchHHHHHHHHHHHHhccccCCchhhhHH---HHHHhCCHHHHHHHHHHHHH
Confidence 455555556678888888888887777777663 333334 5667777777654
No 8
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}
Probab=15.81 E-value=14 Score=25.69 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=11.0
Q ss_pred CCccc-cchHHHHH
Q 043130 56 HRLVD-ENMIVLRK 68 (157)
Q Consensus 56 g~LVD-E~MiVLRk 68 (157)
|+++| +||-||++
T Consensus 133 G~Vie~~G~dvl~~ 146 (171)
T d2c3ba1 133 GEVADEKSYSVVKE 146 (171)
T ss_dssp EEECSHHHHHHHHH
T ss_pred EEEEeccCHHHHHH
Confidence 58998 79999976
No 9
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=15.81 E-value=24 Score=20.72 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=23.7
Q ss_pred HHHHHHHH---------HHhcCCCCCchHHHHHh--hhccch--hHHHHHHHH
Q 043130 68 KRIHEMKM---------IERNYEPPENWMEWEKK--YYTGYD--SYICEAMGV 107 (157)
Q Consensus 68 kRI~Emkm---------~E~~ye~P~~WmeWEK~--~y~~Y~--sdVc~a~g~ 107 (157)
.||+++|. ++.-.-+++....||+. +.++++ ..+|+++++
T Consensus 4 ~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v 56 (68)
T d1b0na2 4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDV 56 (68)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCC
Confidence 56777764 34445667788888873 335553 445555544
No 10
>d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=15.75 E-value=24 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.715 Sum_probs=17.5
Q ss_pred CCCchHHHHHhhhccchh-HHHH
Q 043130 82 PPENWMEWEKKYYTGYDS-YICE 103 (157)
Q Consensus 82 ~P~~WmeWEK~~y~~Y~s-dVc~ 103 (157)
.--+|.+.||.+-+.|++ .+|.
T Consensus 55 sdyhwsdleksficrynaaaica 77 (109)
T d2iu5a2 55 SDYHWSDLEKSFICRYNAAAICA 77 (109)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhhhhHhhhcchHHHhh
Confidence 346899999999999974 4554
Done!