BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043131
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZSH|B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|B Chain B, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 110
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 43/144 (29%)
Query: 21 PSGKGKMWEEEQTDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLA 80
P K M E+ DG GMDELLAVLGY VRSS+M +VAQK+EQLE M Q D ++ LA
Sbjct: 7 PQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLA 66
Query: 81 TDTVHYDPSNLCTWLESMLTEFNPTMPAGLGLDPVPAPSVFDDSSFVAPAESSTITSLDF 140
T+TVHY+P+ L TWL+SMLT+ NP PS
Sbjct: 67 TETVHYNPAELYTWLDSMLTDLNP-------------PS--------------------- 92
Query: 141 SHQRVLEEPSTSDYDLKAIPGKAM 164
S ++YDLKAIPG A+
Sbjct: 93 ---------SNAEYDLKAIPGDAI 107
>pdb|1FZA|C Chain C, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|F Chain F, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|C Chain C, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|F Chain F, Crystal Structure Of Crosslinked Fragment D
pdb|1FZC|C Chain C, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|F Chain F, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|C Chain C, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZE|F Chain F, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZF|C Chain C, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|F Chain F, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|3E1I|C Chain C, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|3E1I|F Chain F, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2XNX|C Chain C, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|F Chain F, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|I Chain I, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|L Chain L, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|C Chain C, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|F Chain F, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
Length = 319
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 69 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 128
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 129 GHLSP---TGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 185
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 186 K-YRLTYAYFAGGD 198
>pdb|1N86|C Chain C, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N86|F Chain F, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N8E|C Chain C, Fragment Double-D From Human Fibrin
pdb|1N8E|F Chain F, Fragment Double-D From Human Fibrin
pdb|2HLO|C Chain C, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2HLO|F Chain F, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2Z4E|C Chain C, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
pdb|2Z4E|F Chain F, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
pdb|2Q9I|C Chain C, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide.
pdb|2Q9I|F Chain F, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide
Length = 324
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 69 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 128
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 129 GHLSP---TGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 185
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 186 K-YRLTYAYFAGGD 198
>pdb|2H43|C Chain C, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2H43|F Chain F, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2HOD|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|I Chain I, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|L Chain L, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HPC|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|I Chain I, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|L Chain L, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide
Length = 323
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 68 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 127
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 128 GHLSP---TGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 184
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 185 K-YRLTYAYFAGGD 197
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 156 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 215
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 216 GHLSP---TGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 272
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 273 K-YRLTYAYFAGGD 285
>pdb|3HUS|C Chain C, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3HUS|F Chain F, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 311
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 61 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 120
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 121 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 177
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 178 K-YRLTYAYFAGGD 190
>pdb|3BVH|C Chain C, Crystal Structure Of Recombinant Gammad364a Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3BVH|F Chain F, Crystal Structure Of Recombinant Gammad364a Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 293
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 55 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 114
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 115 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 171
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 172 K-YRLTYAYFAGGD 184
>pdb|3H32|C Chain C, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|F Chain F, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 317
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 62 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 121
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 122 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 178
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 179 K-YRLTYAYFAGGD 191
>pdb|3FIB|A Chain A, Recombinant Human Gamma-fibrinogen Carboxyl Terminal
Fragment (residues 143-411) Bound To Calcium At Ph 6.0:
A Further Refinement Of Pdb Entry 1fib, And Differs From
1fib By The Modelling Of A Cis Peptide Bond Between
Residues K338 And C339
Length = 249
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 13 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 72
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 73 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 129
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 130 KY-RLTYAYFAGGD 142
>pdb|1LT9|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D
pdb|1LT9|F Chain F, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D
pdb|1LTJ|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
Gly-His-Arg-Pro-Amide
pdb|1LTJ|F Chain F, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
Gly-His-Arg-Pro-Amide
pdb|1RE3|C Chain C, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE3|F Chain F, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE4|C Chain C, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
pdb|1RE4|F Chain F, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
pdb|2FFD|C Chain C, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
pdb|2FFD|F Chain F, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
Length = 311
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 61 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 120
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 121 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 177
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 178 K-YRLTYAYFAGGD 190
>pdb|2OYH|C Chain C, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2OYH|F Chain F, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2OYI|C Chain C, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|2OYI|F Chain F, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 311
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 61 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 120
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 121 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 177
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 178 K-YRLTYAYFAGGD 190
>pdb|1RF0|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF0|F Chain F, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF1|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1RF1|F Chain F, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 311
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 61 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 120
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 121 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 177
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 178 K-YRLTYAYFAGGD 190
>pdb|1FIC|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
Terminal Fragment
pdb|1FIC|B Chain B, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
Terminal Fragment
pdb|2FIB|A Chain A, Recombinant Human Gamma-Fibrinogen Carboxyl Terminal
Fragment (Residues 143-411) Complexed To The Peptide
Gly- Pro-Arg-Pro At Ph 6.0
pdb|1FIB|A Chain A, Recombinant Human Gamma-Fibrinogen Carboxyl Terminal
Fragment (Residues 143-411) Bound To Calcium At Ph 6.0
pdb|1FID|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
Terminal Fragment
Length = 269
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 431 LAQPGAIDKVLSVVKNIKPD--IFTVAEQEANHNG-PVFLDRFTESLHYYSTMFDSLEGS 487
+A GA L +K +K + E + + NG VF R S+ + EG
Sbjct: 14 IANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGF 73
Query: 488 VN-SPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGSNAY 546
+ SP TE ++GN+ ++++ + A L W R S+A + +G A
Sbjct: 74 GHLSPT---GTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEAD 130
Query: 547 KQASMLLALFAGGD 560
K + A FAGGD
Sbjct: 131 KY-RLTYAYFAGGD 143
>pdb|3C9G|A Chain A, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
pdb|3C9G|B Chain B, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
Length = 142
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 419 VAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGPVF-----LDRFTES 473
+A N E+ + + DKVL ++NI PD AE E + G V+ LDRF E
Sbjct: 4 LAKNVEIEIRTKIHPTESEDKVLKAIRNIFPD----AEIEISEEGEVYGRAYSLDRFREL 59
Query: 474 LHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNV 509
L + D+ + N K +T Y+ Q V
Sbjct: 60 LR-KQRILDTARSEILKGRNGKEVT-IYLNKQTATV 93
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 345 QALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR---GFVANSL 401
Q ++R G + G G +A TD + + K+ +L E++ + + V+N++
Sbjct: 231 QEKSVRSGTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKLKKYPNVNIVSNNV 290
Query: 402 ADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGA 436
A L + L P+ D+ A F+LH + G+
Sbjct: 291 ARLPNTTLITIPN-TDAQAKLIGFDLHNICVSSGS 324
>pdb|3MLE|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|B Chain B, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|C Chain C, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|D Chain D, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|E Chain E, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|F Chain F, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3QXC|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Atp
pdb|3QXH|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Adp And
8-Aminocaprylic Acid
pdb|3QXJ|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gtp
pdb|3QXS|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Anp
pdb|3QXX|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gdp And
8-Aminocaprylic Acid
pdb|3QY0|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gdp
Length = 242
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 411 IKPSEVD-SVAVNSVFELHKLLAQPGAIDKVLSVVKNI------KPDIFTVAEQEANHNG 463
+KP E + A+N + H L +D+ L++ K+I K +A+QE + N
Sbjct: 56 LKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTL-KDISFYRYHKVSAPLIAQQEEDPNA 114
Query: 464 PVFLDRFTESLHYYSTMFD 482
P+ D T+ LH ++ +D
Sbjct: 115 PIDTDNLTQRLHNFTKTYD 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,596,759
Number of Sequences: 62578
Number of extensions: 651359
Number of successful extensions: 1565
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1563
Number of HSP's gapped (non-prelim): 18
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)