Query 043131
Match_columns 592
No_of_seqs 202 out of 727
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 13:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 3E-109 6E-114 880.0 37.0 359 226-587 1-374 (374)
2 PF12041 DELLA: Transcriptiona 100.0 1.4E-44 3.1E-49 296.8 4.7 69 39-107 1-69 (73)
3 PRK15451 tRNA cmo(5)U34 methyl 96.5 0.078 1.7E-06 53.8 14.6 191 301-539 34-226 (247)
4 TIGR02716 C20_methyl_CrtF C-20 94.0 1.7 3.6E-05 45.4 15.2 116 314-459 138-257 (306)
5 TIGR00740 methyltransferase, p 93.8 4.1 8.9E-05 40.8 17.0 106 325-455 53-159 (239)
6 TIGR02752 MenG_heptapren 2-hep 92.9 8.9 0.00019 37.9 17.7 113 315-455 35-149 (231)
7 PRK14103 trans-aconitate 2-met 92.5 6.7 0.00015 39.7 16.4 107 315-457 19-126 (255)
8 PF12847 Methyltransf_18: Meth 91.1 0.53 1.1E-05 40.7 5.8 105 328-456 4-110 (112)
9 PLN02233 ubiquinone biosynthes 90.9 21 0.00046 36.7 18.4 133 313-471 61-195 (261)
10 PRK06202 hypothetical protein; 87.8 18 0.00039 36.1 14.6 109 322-455 57-165 (232)
11 PF13489 Methyltransf_23: Meth 86.4 3.9 8.5E-05 37.2 8.4 98 323-460 20-119 (161)
12 PF09243 Rsm22: Mitochondrial 83.9 6.5 0.00014 41.0 9.6 138 309-474 13-156 (274)
13 PF01209 Ubie_methyltran: ubiE 83.7 1.9 4E-05 44.0 5.4 179 316-543 38-220 (233)
14 PF13649 Methyltransf_25: Meth 83.2 2.4 5.3E-05 36.5 5.2 94 329-446 1-95 (101)
15 PRK08317 hypothetical protein; 82.5 37 0.00081 32.8 13.8 42 317-364 11-52 (241)
16 PLN02396 hexaprenyldihydroxybe 82.4 27 0.00058 37.5 13.7 99 327-456 133-234 (322)
17 PF13847 Methyltransf_31: Meth 82.4 11 0.00023 35.0 9.5 105 324-455 2-108 (152)
18 smart00138 MeTrc Methyltransfe 82.0 2.2 4.8E-05 44.1 5.2 56 319-378 93-150 (264)
19 TIGR00477 tehB tellurite resis 81.5 9.8 0.00021 37.2 9.3 111 312-452 17-128 (195)
20 PTZ00098 phosphoethanolamine N 80.6 51 0.0011 34.0 14.6 46 311-364 38-83 (263)
21 PF03291 Pox_MCEL: mRNA cappin 80.0 11 0.00024 40.6 9.8 116 325-454 62-183 (331)
22 PF05269 Phage_CII: Bacterioph 79.6 0.95 2.1E-05 40.2 1.3 26 38-63 51-76 (91)
23 PLN02585 magnesium protoporphy 79.0 26 0.00055 37.6 12.1 103 325-455 144-248 (315)
24 PRK12335 tellurite resistance 77.7 18 0.00038 37.7 10.3 96 328-453 123-219 (287)
25 PRK01683 trans-aconitate 2-met 77.5 26 0.00055 35.4 11.1 113 313-458 19-131 (258)
26 TIGR03438 probable methyltrans 77.1 30 0.00064 36.4 11.8 121 316-457 56-177 (301)
27 TIGR03587 Pse_Me-ase pseudamin 77.0 33 0.00072 34.1 11.5 100 328-459 46-145 (204)
28 PLN02336 phosphoethanolamine N 74.8 34 0.00074 38.0 12.1 137 315-483 27-172 (475)
29 PRK11207 tellurite resistance 73.5 38 0.00083 33.2 10.9 111 314-454 19-131 (197)
30 PF03848 TehB: Tellurite resis 70.2 37 0.0008 34.0 9.9 111 315-455 20-131 (192)
31 COG2226 UbiE Methylase involve 69.7 1.4E+02 0.0031 30.9 16.9 191 301-540 26-221 (238)
32 PRK15001 SAM-dependent 23S rib 68.6 31 0.00068 37.9 9.8 109 328-457 231-340 (378)
33 TIGR01934 MenG_MenH_UbiE ubiqu 68.3 1.2E+02 0.0025 29.3 18.5 118 312-458 26-145 (223)
34 PF13679 Methyltransf_32: Meth 66.1 13 0.00029 34.5 5.6 40 321-364 21-61 (141)
35 TIGR02021 BchM-ChlM magnesium 61.0 71 0.0015 31.4 10.0 60 308-380 36-97 (219)
36 PF00891 Methyltransf_2: O-met 59.6 53 0.0011 32.9 8.9 111 315-461 90-204 (241)
37 PRK00216 ubiE ubiquinone/menaq 59.4 1.8E+02 0.0038 28.3 15.8 42 317-364 43-84 (239)
38 PLN02336 phosphoethanolamine N 59.1 1.3E+02 0.0029 33.4 12.7 113 314-456 255-368 (475)
39 TIGR02072 BioC biotin biosynth 57.1 1.9E+02 0.0041 28.0 14.1 100 325-456 34-134 (240)
40 COG0052 RpsB Ribosomal protein 56.1 9 0.00019 39.9 2.7 112 324-461 35-169 (252)
41 PRK14968 putative methyltransf 54.2 1.4E+02 0.003 28.0 10.4 43 325-380 23-65 (188)
42 PF08241 Methyltransf_11: Meth 54.0 45 0.00098 27.1 6.2 93 330-454 1-94 (95)
43 PRK03522 rumB 23S rRNA methylu 53.8 1.4E+02 0.0031 31.5 11.3 98 327-456 175-273 (315)
44 PRK05785 hypothetical protein; 53.0 1.1E+02 0.0024 30.8 10.0 94 326-457 52-146 (226)
45 PF12147 Methyltransf_20: Puta 51.5 1.2E+02 0.0026 32.8 10.1 159 322-539 132-294 (311)
46 PRK09489 rsmC 16S ribosomal RN 51.4 1.2E+02 0.0027 32.8 10.5 101 328-455 199-301 (342)
47 TIGR03439 methyl_EasF probable 49.6 1.5E+02 0.0034 31.9 10.9 150 316-483 69-234 (319)
48 TIGR00138 gidB 16S rRNA methyl 48.9 2.5E+02 0.0055 27.3 11.5 96 327-456 44-141 (181)
49 TIGR00537 hemK_rel_arch HemK-r 48.8 2.1E+02 0.0045 27.2 10.7 50 328-394 22-71 (179)
50 PF08242 Methyltransf_12: Meth 46.6 8.2 0.00018 32.9 0.6 29 330-365 1-29 (99)
51 PRK11036 putative S-adenosyl-L 46.6 1.6E+02 0.0035 29.8 10.1 111 315-455 35-147 (255)
52 PF07521 RMMBL: RNA-metabolisi 46.5 37 0.0008 25.7 4.1 38 417-456 1-39 (43)
53 PLN02244 tocopherol O-methyltr 46.1 3.6E+02 0.0078 28.9 13.1 100 325-454 118-220 (340)
54 COG0357 GidB Predicted S-adeno 46.1 2.3E+02 0.005 29.0 10.9 86 290-406 45-131 (215)
55 TIGR02081 metW methionine bios 44.5 3E+02 0.0065 26.5 11.5 39 316-364 6-44 (194)
56 PRK10909 rsmD 16S rRNA m(2)G96 42.9 2.5E+02 0.0055 28.0 10.6 106 327-462 55-164 (199)
57 TIGR02085 meth_trns_rumB 23S r 42.8 2.1E+02 0.0046 31.1 10.9 97 328-456 236-333 (374)
58 COG4106 Tam Trans-aconitate me 42.5 1.2E+02 0.0025 31.8 8.1 115 317-464 22-136 (257)
59 COG2227 UbiG 2-polyprenyl-3-me 42.2 60 0.0013 33.9 6.1 100 325-455 59-159 (243)
60 TIGR02469 CbiT precorrin-6Y C5 41.6 78 0.0017 27.3 6.1 42 328-380 22-63 (124)
61 PLN02490 MPBQ/MSBQ methyltrans 41.6 4.2E+02 0.009 28.9 12.7 100 325-455 113-213 (340)
62 PRK05134 bifunctional 3-demeth 41.6 3.6E+02 0.0077 26.6 14.7 21 522-542 184-204 (233)
63 PRK15068 tRNA mo(5)U34 methylt 40.7 2.7E+02 0.0059 29.7 11.1 102 327-456 124-225 (322)
64 TIGR00452 methyltransferase, p 40.5 2.6E+02 0.0055 30.1 10.8 113 316-456 112-224 (314)
65 PRK00107 gidB 16S rRNA methylt 38.8 3.9E+02 0.0086 26.3 12.3 96 327-456 47-144 (187)
66 PLN02446 (5-phosphoribosyl)-5- 37.4 41 0.0009 35.3 4.2 27 322-349 55-81 (262)
67 PRK00121 trmB tRNA (guanine-N( 37.4 1.9E+02 0.0041 28.5 8.7 110 325-455 40-154 (202)
68 PRK06922 hypothetical protein; 35.1 2.2E+02 0.0048 33.9 9.9 108 327-457 420-538 (677)
69 smart00650 rADc Ribosomal RNA 35.0 81 0.0018 29.9 5.5 53 315-380 3-55 (169)
70 COG1341 Predicted GTPase or GT 34.9 3.2E+02 0.007 30.6 10.6 104 322-459 99-211 (398)
71 PRK03646 dadX alanine racemase 34.9 78 0.0017 34.3 6.0 37 325-365 117-158 (355)
72 PRK11705 cyclopropane fatty ac 34.9 3.8E+02 0.0082 29.4 11.3 114 309-455 151-265 (383)
73 PRK10258 biotin biosynthesis p 32.8 5.1E+02 0.011 25.9 11.6 43 313-364 30-72 (251)
74 PF08499 PDEase_I_N: 3'5'-cycl 32.6 17 0.00036 30.1 0.3 27 72-101 5-31 (59)
75 PRK13255 thiopurine S-methyltr 32.5 4.2E+02 0.0091 26.7 10.4 119 326-466 38-168 (218)
76 COG2242 CobL Precorrin-6B meth 31.3 91 0.002 31.3 5.3 53 318-384 27-82 (187)
77 COG1093 SUI2 Translation initi 31.0 63 0.0014 34.1 4.2 43 353-395 219-261 (269)
78 PRK00274 ksgA 16S ribosomal RN 30.8 78 0.0017 32.8 5.0 54 302-364 14-72 (272)
79 PRK14751 tetracycline resistan 29.4 23 0.0005 24.6 0.5 10 83-92 7-16 (28)
80 PF02310 B12-binding: B12 bind 29.0 1.1E+02 0.0024 26.8 5.0 84 379-477 19-102 (121)
81 TIGR00044 pyridoxal phosphate 28.4 1.2E+02 0.0026 30.6 5.8 60 325-388 121-189 (229)
82 PF02353 CMAS: Mycolic acid cy 27.9 3.6E+02 0.0078 28.2 9.3 113 315-456 52-165 (273)
83 TIGR02129 hisA_euk phosphoribo 27.8 61 0.0013 33.9 3.5 24 322-349 50-73 (253)
84 PF05175 MTS: Methyltransferas 27.7 2.1E+02 0.0044 27.3 6.9 116 313-454 19-137 (170)
85 PRK11873 arsM arsenite S-adeno 27.1 4.5E+02 0.0098 26.7 9.7 102 327-455 79-181 (272)
86 KOG1165 Casein kinase (serine/ 26.1 38 0.00082 37.3 1.7 13 323-335 164-176 (449)
87 COG2096 cob(I)alamin adenosylt 25.8 55 0.0012 32.8 2.6 77 25-106 23-104 (184)
88 COG2813 RsmC 16S RNA G1207 met 25.5 1.2E+02 0.0026 32.6 5.3 56 314-380 147-202 (300)
89 TIGR01088 aroQ 3-dehydroquinat 24.6 83 0.0018 30.3 3.5 41 355-395 8-48 (141)
90 cd00635 PLPDE_III_YBL036c_like 24.4 3.2E+02 0.007 27.2 7.9 67 325-395 117-196 (222)
91 TIGR01716 RGG_Cterm transcript 23.9 1.3E+02 0.0028 29.4 4.9 55 226-280 127-182 (220)
92 PRK10507 bifunctional glutathi 23.5 2.4E+02 0.0052 33.3 7.6 86 332-429 353-443 (619)
93 PF11455 DUF3018: Protein of 23.3 48 0.0011 27.9 1.5 21 522-542 3-23 (65)
94 PRK07580 Mg-protoporphyrin IX 22.9 4.8E+02 0.01 25.4 8.7 99 324-454 62-162 (230)
95 PF14044 NETI: NETI protein 22.7 67 0.0015 26.4 2.1 23 518-540 4-26 (57)
96 PRK05395 3-dehydroquinate dehy 22.6 92 0.002 30.2 3.4 41 355-395 10-50 (146)
97 TIGR03533 L3_gln_methyl protei 22.2 7.8E+02 0.017 25.7 10.5 54 326-394 122-177 (284)
98 cd00466 DHQase_II Dehydroquina 22.0 94 0.002 29.9 3.3 67 355-424 8-74 (140)
99 PF01168 Ala_racemase_N: Alani 21.8 2.4E+02 0.0051 27.6 6.3 38 322-363 108-150 (218)
100 COG2230 Cfa Cyclopropane fatty 21.2 2.9E+02 0.0064 29.5 7.1 115 309-454 56-173 (283)
101 PRK07402 precorrin-6B methylas 20.9 2.5E+02 0.0054 27.2 6.2 62 309-381 24-85 (196)
102 smart00828 PKS_MT Methyltransf 20.9 7.3E+02 0.016 24.1 9.6 100 328-455 2-102 (224)
103 PRK13168 rumA 23S rRNA m(5)U19 20.7 8.7E+02 0.019 27.0 11.1 109 318-456 290-399 (443)
104 KOG1270 Methyltransferases [Co 20.5 2.5E+02 0.0053 30.1 6.2 103 319-450 86-188 (282)
105 COG0123 AcuC Deacetylases, inc 20.4 73 0.0016 34.6 2.5 27 315-343 146-174 (340)
106 PRK08287 cobalt-precorrin-6Y C 20.2 2.4E+02 0.0051 27.1 5.8 53 317-380 23-75 (187)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=2.6e-109 Score=879.96 Aligned_cols=359 Identities=51% Similarity=0.897 Sum_probs=335.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHhhccccCCCCchhhHHHHHHHHHHHHHhcCCCCC-----CCCC---CHHHH--H
Q 043131 226 LVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYGLYPQS-----PIDH---SFSEL--L 295 (592)
Q Consensus 226 Lv~LLlaCAeAV~~gd~~~A~~lL~~L~~las~~g~~~qRvA~yFaeAL~~Rl~~~~p~~-----~~~~---s~~~~--l 295 (592)
|++||++||+||+.||.+.|+.+|++|++++++.|+++||||+||++||++||.+..++. +... ...+. .
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999955431 1111 12222 2
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHH
Q 043131 296 EMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQ 375 (592)
Q Consensus 296 ~~~fye~~P~lkFAhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~e 375 (592)
+..||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.+.+.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999998878899999
Q ss_pred HHHHHHHHHHHcCceeEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCC----ChHHHHHHHHHhcCCcE
Q 043131 376 VGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQP----GAIDKVLSVVKNIKPDI 451 (592)
Q Consensus 376 tG~rL~~fA~~lgVpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~----~~~~~~L~~Ir~L~PkV 451 (592)
||+||.+||+++||||||++|+..+++++++++|++++ ||+|||||+|+||+|++++ .+++.||+.||+|+|+|
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~--~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRP--GEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccC--CcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999888999999999999995 6999999999999999643 36889999999999999
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHH-HhhcccchhhcccCCCccccccChHHHHHH
Q 043131 452 FTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEA-YMGNQICNVVACEGADRVERHETLAQWRTR 530 (592)
Q Consensus 452 vtlvEqEanhNsp~Fl~RF~EAL~yYsalFDSLea~~~~~s~~r~~~E~-~lgreI~NiVAcEG~~RvERhE~~~qWr~R 530 (592)
||++|+|+|||+|+|++||.|||+||+++|||||+++++.+.+|..+|+ +||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 9999999999999999999999999999999999999888888887775 599999999999999999999999999999
Q ss_pred HHcCCCccccCChhHHHHHHHHHHhcCCCCCcEEEeeCcEEEEeeCCceeEEEEeee
Q 043131 531 FSSAGFIPAHIGSNAYKQASMLLALFAGGDGYKVEENNGCLTLGWYTRPLIATSAWK 587 (592)
Q Consensus 531 m~~AGF~pvpLs~~a~~qA~~LL~~~~~~~gy~v~e~~g~L~LgWk~rpL~a~SAW~ 587 (592)
|.+|||+++|+|++++.||++||++|. ++||+|++++|||+||||++||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999997 89999999999999999999999999997
No 2
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=100.00 E-value=1.4e-44 Score=296.78 Aligned_cols=69 Identities=67% Similarity=1.046 Sum_probs=49.9
Q ss_pred hhhhhhhCCcccCCcHHHHHHHHHHHHHHhcccccccccccccCccccCCCccchHHHHHhhccCCCCC
Q 043131 39 DELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDTVHYDPSNLCTWLESMLTEFNPTMP 107 (592)
Q Consensus 39 d~~la~~gy~v~~~~m~~vaqkle~le~~m~~~~~d~~s~lasdtvhynpsdls~w~~sml~e~~~~~~ 107 (592)
|||||++|||||||||+||||||||||+|||++|+||||||||||||||||||++||||||+||||+|+
T Consensus 1 DellA~lGYkVrsSdmadVAQkLEqLE~vmg~~~~d~ls~lasDTVhyNPSDLs~WvesMLsEln~~~~ 69 (73)
T PF12041_consen 1 DELLAVLGYKVRSSDMADVAQKLEQLEMVMGNAQEDGLSQLASDTVHYNPSDLSSWVESMLSELNPPPN 69 (73)
T ss_dssp -HHHHTTT-B-BGGGHHHHHHHHHHHHHHHTT---------HCCHCCS-TTBHHHHHHHHHHC------
T ss_pred CchhhhhcccccchHHHHHHHHHHHHHHHHcccccchHHHhhhhhhccChHHHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999998765
No 3
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.45 E-value=0.078 Score=53.79 Aligned_cols=191 Identities=10% Similarity=0.144 Sum_probs=98.9
Q ss_pred hhCChhHHHHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 301 ETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 301 e~~P~lkFAhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
...|.+...|-.++..+-.-+. ..-+|+|+|.|.|.--..|.+.+. .|..++|||++ +...++...+++
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~----S~~ml~~A~~~~ 102 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDN----SPAMIERCRRHI 102 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeC----CHHHHHHHHHHH
Confidence 4678888777766643322232 224799999999973333333221 24579999994 345666665555
Q ss_pred HHHHHHcCceeEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCc-EEEEEecC
Q 043131 381 AQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPD-IFTVAEQE 458 (592)
Q Consensus 381 ~~fA~~lgVpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~Pk-VvtlvEqE 458 (592)
.++. ..-.++|.. .++.++. .. +.++++ +.+.||++.. ..+..+|+.| +.|+|. +++++|.=
T Consensus 103 ~~~~--~~~~v~~~~---~d~~~~~-----~~--~~D~vv--~~~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 103 DAYK--APTPVDVIE---GDIRDIA-----IE--NASMVV--LNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HhcC--CCCCeEEEe---CChhhCC-----CC--CCCEEe--hhhHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4321 111344432 2233322 11 224444 4466888742 3456676665 778997 45556643
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhhhhccCCCCchHHHHHHHHhhcccchhhcccCCCccccccChHHHHHHHHcCCCcc
Q 043131 459 ANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIP 538 (592)
Q Consensus 459 anhNsp~Fl~RF~EAL~yYsalFDSLea~~~~~s~~r~~~E~~lgreI~NiVAcEG~~RvERhE~~~qWr~Rm~~AGF~p 538 (592)
... .+.+-+.+.+..+.|. .... -+.+.+ .+. ...+. ++-+.++..+...+|+.|||..
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~------~~~g--~s~~ei-~~~--~~~~~---------~~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 167 SFE-DAKVGELLFNMHHDFK------RANG--YSELEI-SQK--RSMLE---------NVMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred CCC-cchhHHHHHHHHHHHH------HHcC--CCHHHH-HHH--HHHHH---------hhcccCCHHHHHHHHHHcCchh
Confidence 322 2233344443332221 1111 111111 010 01122 2344578899999999999987
Q ss_pred c
Q 043131 539 A 539 (592)
Q Consensus 539 v 539 (592)
+
T Consensus 226 v 226 (247)
T PRK15451 226 S 226 (247)
T ss_pred H
Confidence 5
No 4
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.00 E-value=1.7 Score=45.39 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce--e
Q 043131 314 NQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE--F 391 (592)
Q Consensus 314 NQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp--F 391 (592)
.+.|++.+.-.+.-+|+|+|.|.|. +..+++.+- |.+++|+++.| ..++.+.+ .++..|+. +
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-----~~~~~a~~----~~~~~gl~~rv 201 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-----GAIDLVNE----NAAEKGVADRM 201 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-----HHHHHHHH----HHHhCCccceE
Confidence 4667777765666799999999995 444454442 56899999853 23444333 34445553 4
Q ss_pred EEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCc-EEEEEecCC
Q 043131 392 EYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPD-IFTVAEQEA 459 (592)
Q Consensus 392 eF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~Pk-VvtlvEqEa 459 (592)
+|.. . +..+. .+ + +.+++.+. ..||...+ .....+|+.+ +.|+|. .++++|.-.
T Consensus 202 ~~~~--~-d~~~~-----~~-~-~~D~v~~~--~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 202 RGIA--V-DIYKE-----SY-P-EADAVLFC--RILYSANE--QLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEe--c-CccCC-----CC-C-CCCEEEeE--hhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 4443 2 22111 11 1 22444433 34565422 2345677655 789995 455567544
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.78 E-value=4.1 Score=40.82 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=59.0
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccC
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADL 404 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl 404 (592)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||++ +...++...+++.++. .+..++|.. .++.++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~----s~~ml~~a~~~~~~~~--~~~~v~~~~---~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDN----SQPMVERCRQHIAAYH--SEIPVEILC---NDIRHV 118 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeC----CHHHHHHHHHHHHhcC--CCCCeEEEE---CChhhC
Confidence 33479999999995 4455554421 24579999995 3455655555554321 122334432 233332
Q ss_pred CcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEE
Q 043131 405 DASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVA 455 (592)
Q Consensus 405 ~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlv 455 (592)
. .. +..+ |-|.+.||++.. .....+|+.+ +.|+|.-.+++
T Consensus 119 ~-----~~--~~d~--v~~~~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 E-----IK--NASM--VILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred C-----CC--CCCE--EeeecchhhCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 2 11 1233 335566788742 2345566655 67899877775
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=92.93 E-value=8.9 Score=37.85 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEE
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEY 393 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF 393 (592)
+.++..+.-...-+|+|+|.|.|.-.. .|+.+ .+|..++|||+. +...++...+++. ..+++ .+|
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~--~~~~~~v~gvD~----s~~~~~~a~~~~~----~~~~~~v~~ 100 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEA--VGPEGHVIGLDF----SENMLSVGRQKVK----DAGLHNVEL 100 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHH--hCCCCEEEEEEC----CHHHHHHHHHHHH----hcCCCceEE
Confidence 456666654444589999999998333 33332 124568999994 3344544444443 23332 233
Q ss_pred eeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEEEEE
Q 043131 394 RGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIFTVA 455 (592)
Q Consensus 394 ~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVvtlv 455 (592)
.. .+.+++. +..+.-+.|+.+ +.+|++.+ ...+|+ ..+.|+|.-.+++
T Consensus 101 ~~---~d~~~~~-----~~~~~fD~V~~~--~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 101 VH---GNAMELP-----FDDNSFDYVTIG--FGLRNVPD----YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EE---echhcCC-----CCCCCccEEEEe--cccccCCC----HHHHHHHHHHHcCcCeEEEE
Confidence 21 1222221 111111344444 45676532 345555 4577899855553
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.48 E-value=6.7 Score=39.74 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=61.0
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR 394 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~ 394 (592)
+.+++.+.-...-+|+|+|.|.|. +...|+.+- |..++|||+. +...+ +.|+..++.| .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~----s~~~~--------~~a~~~~~~~--~ 77 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDS----SPEMV--------AAARERGVDA--R 77 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEEC----CHHHH--------HHHHhcCCcE--E
Confidence 357777765566789999999994 555666652 3458999994 23333 3344445543 2
Q ss_pred eeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEEEEEec
Q 043131 395 GFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIFTVAEQ 457 (592)
Q Consensus 395 ~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVvtlvEq 457 (592)
. ...+++.+ . +.=+.++.| +.||++.+ . ..+|+ ..+.|+|.-.+++..
T Consensus 78 ~---~d~~~~~~-----~-~~fD~v~~~--~~l~~~~d---~-~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 78 T---GDVRDWKP-----K-PDTDVVVSN--AALQWVPE---H-ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred E---cChhhCCC-----C-CCceEEEEe--hhhhhCCC---H-HHHHHHHHHhCCCCcEEEEEc
Confidence 1 22232211 0 111344444 45788743 2 44555 457799997776653
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.09 E-value=0.53 Score=40.75 Aligned_cols=105 Identities=25% Similarity=0.286 Sum_probs=60.2
Q ss_pred EEEecccCCCCchHHHHHHHhc-CCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCc
Q 043131 328 HVIDFSMNQGMQWPALMQALAL-RPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDA 406 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~-RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~ 406 (592)
+|+|+|.|.|. +...|+. +++ .|+|||+. +...++...+++.+....-+| +|.. .++ .
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~~~----~~v~gvD~----s~~~~~~a~~~~~~~~~~~~i--~~~~---~d~----~ 62 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLFPG----ARVVGVDI----SPEMLEIARERAAEEGLSDRI--TFVQ---GDA----E 62 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHHTT----SEEEEEES----SHHHHHHHHHHHHHTTTTTTE--EEEE---SCC----H
T ss_pred EEEEEcCcCCH----HHHHHHhcCCC----CEEEEEeC----CHHHHHHHHHHHHhcCCCCCe--EEEE---Ccc----c
Confidence 68999999996 4444444 333 68999994 456676666666333333334 4432 122 1
Q ss_pred ccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 043131 407 SMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAE 456 (592)
Q Consensus 407 ~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvE 456 (592)
....... .-++++.+. +.+|.++.. .....+|+.+ +.|+|.-.++++
T Consensus 63 ~~~~~~~-~~D~v~~~~-~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 63 FDPDFLE-PFDLVICSG-FTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGTTTSS-CEEEEEECS-GSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCcccCC-CCCEEEECC-Cccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111110 124566665 566666543 4466777766 678998887764
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.92 E-value=21 Score=36.71 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=69.4
Q ss_pred HHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeE
Q 043131 313 ANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFE 392 (592)
Q Consensus 313 ANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFe 392 (592)
....+++.+.-...-+|+|+|.|.|. +...|+.+- +|.-+||||+. +.+.++...++....++...-..+
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~----S~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDF----SSEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEEC----CHHHHHHHHHHhhhhhhccCCCeE
Confidence 34444444443445589999999997 334455442 23458999994 355666665554322222222334
Q ss_pred EeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEE-EEEecCCCCCCCchHHHH
Q 043131 393 YRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIF-TVAEQEANHNGPVFLDRF 470 (592)
Q Consensus 393 F~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVv-tlvEqEanhNsp~Fl~RF 470 (592)
|.. .+.+++. +. ++..=+|-+.+.||++.+ ...+|+ ..|-|+|.=. +++|-.. ....|...+
T Consensus 131 ~~~---~d~~~lp-----~~--~~sfD~V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~~ 194 (261)
T PLN02233 131 WIE---GDATDLP-----FD--DCYFDAITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTSM 194 (261)
T ss_pred EEE---cccccCC-----CC--CCCEeEEEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHHH
Confidence 432 1223322 22 223445556677888743 344555 4577899743 4454432 223455544
Q ss_pred H
Q 043131 471 T 471 (592)
Q Consensus 471 ~ 471 (592)
.
T Consensus 195 ~ 195 (261)
T PLN02233 195 Q 195 (261)
T ss_pred H
Confidence 3
No 10
>PRK06202 hypothetical protein; Provisional
Probab=87.76 E-value=18 Score=36.06 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCc
Q 043131 322 DGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSL 401 (592)
Q Consensus 322 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sl 401 (592)
...+...|+|+|.|.|. +...|.....+ .| |..+||||+. +.+.++...++. ...++.|..- .+..+
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~-~g-~~~~v~gvD~----s~~~l~~a~~~~----~~~~~~~~~~--~~~~l 123 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR-DG-LRLEVTAIDP----DPRAVAFARANP----RRPGVTFRQA--VSDEL 123 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh-CC-CCcEEEEEcC----CHHHHHHHHhcc----ccCCCeEEEE--ecccc
Confidence 33456789999999997 33332222211 12 4578999995 334454433322 1224544332 22222
Q ss_pred ccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEE
Q 043131 402 ADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVA 455 (592)
Q Consensus 402 edl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlv 455 (592)
.. . ++..=+|-|.+.|||+.+. .+..+|+.+.++.-..+++.
T Consensus 124 ~~--------~--~~~fD~V~~~~~lhh~~d~--~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 124 VA--------E--GERFDVVTSNHFLHHLDDA--EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cc--------c--CCCccEEEECCeeecCChH--HHHHHHHHHHHhcCeeEEEe
Confidence 11 1 1223344444568998542 35578887766554555544
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=86.39 E-value=3.9 Score=37.20 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=53.5
Q ss_pred CCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcc
Q 043131 323 GKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLA 402 (592)
Q Consensus 323 g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sle 402 (592)
..+.-.|+|+|.|.| . +...|+.+ |. ++||+++ +...++. ..+.+.-.. ..
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~----~~~~~~~-----------~~~~~~~~~--~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDI----SPQMIEK-----------RNVVFDNFD--AQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEES----SHHHHHH-----------TTSEEEEEE--CH---
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEEC----CHHHHhh-----------hhhhhhhhh--hh---
Confidence 456669999999999 3 45555444 32 9999985 2333322 222222111 00
Q ss_pred cCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEE-EecCCC
Q 043131 403 DLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTV-AEQEAN 460 (592)
Q Consensus 403 dl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtl-vEqEan 460 (592)
..... ++-.=+|-|...||++.+ ...+|+.| +-|+|.-+++ .+....
T Consensus 71 -----~~~~~--~~~fD~i~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 -----DPPFP--DGSFDLIICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp -----THHCH--SSSEEEEEEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred -----hhhcc--ccchhhHhhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 00011 234445555577899863 55666666 5578865544 455443
No 12
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=83.92 E-value=6.5 Score=40.97 Aligned_cols=138 Identities=20% Similarity=0.312 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhhC----CCCeeEEEecccCCCC-chHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHH
Q 043131 309 AHFTANQAILEAFD----GKRRVHVIDFSMNQGM-QWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQL 383 (592)
Q Consensus 309 AhftANQAILEA~~----g~~~VHIIDfgI~~G~-QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~f 383 (592)
+++++-..||+.+. +.+--+|+|||-|-|. =|.. .+.+ +-..++|.|+. ...+.++|++|.+-
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~-----s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDR-----SPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecC-----CHHHHHHHHHHHhc
Confidence 56777777888775 4456699999999884 2321 2222 12468999984 23456777777543
Q ss_pred HHHcCceeEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEecCCCCC
Q 043131 384 AESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAEQEANHN 462 (592)
Q Consensus 384 A~~lgVpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvEqEanhN 462 (592)
..... ..+++. .+......+.+ .+-|++ .+.|-.|.. ..+..+++.+ +.+++ ++|+||...-.
T Consensus 81 ~~~~~-~~~~~~-------~~~~~~~~~~~--~DLvi~--s~~L~EL~~--~~r~~lv~~LW~~~~~-~LVlVEpGt~~- 144 (274)
T PF09243_consen 81 GPNNR-NAEWRR-------VLYRDFLPFPP--DDLVIA--SYVLNELPS--AARAELVRSLWNKTAP-VLVLVEPGTPA- 144 (274)
T ss_pred ccccc-cchhhh-------hhhcccccCCC--CcEEEE--ehhhhcCCc--hHHHHHHHHHHHhccC-cEEEEcCCChH-
Confidence 22111 011111 11111222322 122222 233444433 5677788777 55566 88888876543
Q ss_pred CCchHHHHHHHH
Q 043131 463 GPVFLDRFTESL 474 (592)
Q Consensus 463 sp~Fl~RF~EAL 474 (592)
+-.++.+.++.|
T Consensus 145 Gf~~i~~aR~~l 156 (274)
T PF09243_consen 145 GFRRIAEARDQL 156 (274)
T ss_pred HHHHHHHHHHHH
Confidence 445666666666
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=83.71 E-value=1.9 Score=44.00 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred HHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEee
Q 043131 316 AILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395 (592)
Q Consensus 316 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~ 395 (592)
.+++.+...+-.+|+|.+.|.|.-+..| +.+- .|.-+|||++. +.+.|+...+|+.+.... +| +|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~--~~~~~v~~vD~----s~~ML~~a~~k~~~~~~~-~i--~~v~ 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRV--GPNGKVVGVDI----SPGMLEVARKKLKREGLQ-NI--EFVQ 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGS--S---EEEEEES-----HHHHHHHHHHHHHTT---SE--EEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHC--CCccEEEEecC----CHHHHHHHHHHHHhhCCC-Ce--eEEE
Confidence 3455555666679999999999754444 3332 24459999984 456777777777654322 33 3332
Q ss_pred eecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEEE-EEecCCCCCCCchHHHHHHH
Q 043131 396 FVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIFT-VAEQEANHNGPVFLDRFTES 473 (592)
Q Consensus 396 v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVvt-lvEqEanhNsp~Fl~RF~EA 473 (592)
.+.+++ .+. ++..=+|-|.|.||++.+ .+..|+ ..|-|+|.=.+ ++|-.-..| .++.. .
T Consensus 105 ---~da~~l-----p~~--d~sfD~v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~~---~ 165 (233)
T PF01209_consen 105 ---GDAEDL-----PFP--DNSFDAVTCSFGLRNFPD----RERALREMYRVLKPGGRLVILEFSKPRN--PLLRA---L 165 (233)
T ss_dssp ----BTTB-------S---TT-EEEEEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHHH---H
T ss_pred ---cCHHHh-----cCC--CCceeEEEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEeeccCCCC--chhhc---e
Confidence 222332 333 456778889999999864 334444 55778996533 455432222 23333 3
Q ss_pred HHHHHHHhhh-hhccCCCCchHHHHHH-HHhhcccchhhcccCCCccccccChHHHHHHHHcCCCccccCCh
Q 043131 474 LHYYSTMFDS-LEGSVNSPENHKAMTE-AYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPAHIGS 543 (592)
Q Consensus 474 L~yYsalFDS-Lea~~~~~s~~r~~~E-~~lgreI~NiVAcEG~~RvERhE~~~qWr~Rm~~AGF~pvpLs~ 543 (592)
..+|...+== +...+. .++ .+ .||.+-|.+.. +-++-...|+.+||+.|....
T Consensus 166 ~~~y~~~ilP~~g~l~~---~~~--~~Y~yL~~Si~~f~------------~~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 166 YKFYFKYILPLIGRLLS---GDR--EAYRYLPESIRRFP------------SPEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp HHH---------------------------------------------------------------------
T ss_pred eeeeecccccccccccc---ccc--cccccccccccccc------------ccccccccccccccccccccc
Confidence 3344443221 111111 111 11 35666665433 234556778899998776543
No 14
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=83.15 E-value=2.4 Score=36.48 Aligned_cols=94 Identities=19% Similarity=0.325 Sum_probs=49.2
Q ss_pred EEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCccc
Q 043131 329 VIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASM 408 (592)
Q Consensus 329 IIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~~ 408 (592)
|+|+|.|.|.-=..|.+.+ . .| |..++|||+. +...++...++.. ..+++.+|.. .++.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~-~~-~~~~~~gvD~----s~~~l~~~~~~~~----~~~~~~~~~~---~D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--D-AG-PSSRVIGVDI----SPEMLELAKKRFS----EDGPKVRFVQ---ADARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-----HHHHHHHHHHSH----HTTTTSEEEE---SCTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHh--h-hc-ccceEEEEEC----CHHHHHHHHHhch----hcCCceEEEE---CCHhHCc---
Confidence 7999999998666666665 1 12 5689999993 4556655444333 2455666642 2333332
Q ss_pred ccccCCCCce-EEEEeccchhcccCCCChHHHHHHHHHh
Q 043131 409 LEIKPSEVDS-VAVNSVFELHKLLAQPGAIDKVLSVVKN 446 (592)
Q Consensus 409 L~lr~~~~Ea-LaVN~~f~LH~Ll~~~~~~~~~L~~Ir~ 446 (592)
.. ++.. +||.+...+|++. +..+..+|+.+.+
T Consensus 63 --~~--~~~~D~v~~~~~~~~~~~--~~~~~~ll~~~~~ 95 (101)
T PF13649_consen 63 --FS--DGKFDLVVCSGLSLHHLS--PEELEALLRRIAR 95 (101)
T ss_dssp --HH--SSSEEEEEE-TTGGGGSS--HHHHHHHHHHHHH
T ss_pred --cc--CCCeeEEEEcCCccCCCC--HHHHHHHHHHHHH
Confidence 11 2233 3333344478753 3456777776643
No 15
>PRK08317 hypothetical protein; Provisional
Probab=82.51 E-value=37 Score=32.79 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCC
Q 043131 317 ILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGP 364 (592)
Q Consensus 317 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~ 364 (592)
+++.+.-...-+|+|+|.|.|. |.. .++.+- +|.-++|||+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~ 52 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDR 52 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeC
Confidence 5666665666689999999985 333 333332 24568999984
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=82.44 E-value=27 Score=37.53 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=54.8
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCc--eeEEeeeecCCcccC
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHV--EFEYRGFVANSLADL 404 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgV--pFeF~~v~~~sledl 404 (592)
-.|+|+|.|.|. +...|+. .| .++|||+. +...++...++ ++..++ ..+|.. .+.+++
T Consensus 133 ~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~----s~~~i~~Ar~~----~~~~~~~~~i~~~~---~dae~l 192 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDA----VDKNVKIARLH----ADMDPVTSTIEYLC---TTAEKL 192 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeC----CHHHHHHHHHH----HHhcCcccceeEEe---cCHHHh
Confidence 479999999998 5556764 33 48999984 33444333222 222121 334443 223333
Q ss_pred CcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 043131 405 DASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAE 456 (592)
Q Consensus 405 ~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvE 456 (592)
.. . ++..=+|-|...|||+.+ .+.+|+.+ +-|+|.-.+++.
T Consensus 193 ~~-----~--~~~FD~Vi~~~vLeHv~d----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 193 AD-----E--GRKFDAVLSLEVIEHVAN----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hh-----c--cCCCCEEEEhhHHHhcCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 21 1 112334445567888754 34566666 556898877764
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=82.40 E-value=11 Score=34.99 Aligned_cols=105 Identities=23% Similarity=0.426 Sum_probs=58.7
Q ss_pred CCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcc
Q 043131 324 KRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLA 402 (592)
Q Consensus 324 ~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sle 402 (592)
.+..+|+|+|.|.|. +...|+.+- .|..+||||+. +...++ +..+.++..+++ .+|.. .+++
T Consensus 2 ~~~~~iLDlGcG~G~----~~~~l~~~~--~~~~~i~gvD~----s~~~i~----~a~~~~~~~~~~ni~~~~---~d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR----LLIQLAKEL--NPGAKIIGVDI----SEEMIE----YAKKRAKELGLDNIEFIQ---GDIE 64 (152)
T ss_dssp TTTSEEEEET-TTSH----HHHHHHHHS--TTTSEEEEEES----SHHHHH----HHHHHHHHTTSTTEEEEE---SBTT
T ss_pred CCCCEEEEecCcCcH----HHHHHHHhc--CCCCEEEEEEC----cHHHHH----HhhcccccccccccceEE---eehh
Confidence 356789999999997 444444211 13457999993 444453 334456677876 66654 3444
Q ss_pred cCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEEEEE
Q 043131 403 DLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIFTVA 455 (592)
Q Consensus 403 dl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVvtlv 455 (592)
++... +. . .-+.++.+.+ +|++.+ ...+|. ..+.|+|.-++++
T Consensus 65 ~l~~~-~~-~--~~D~I~~~~~--l~~~~~----~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 65 DLPQE-LE-E--KFDIIISNGV--LHHFPD----PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp CGCGC-SS-T--TEEEEEEEST--GGGTSH----HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccc-cC-C--CeeEEEEcCc--hhhccC----HHHHHHHHHHHcCCCcEEEE
Confidence 44422 22 1 1234444444 466532 334554 4688898876664
No 18
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=81.99 E-value=2.2 Score=44.09 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=37.5
Q ss_pred hhhCCCCeeEEEecccCCCCchHHHHHHHhcCCC--CCCeeEEeecCCCCCCChHHHHHHHH
Q 043131 319 EAFDGKRRVHVIDFSMNQGMQWPALMQALALRPG--GPPAFRLTGIGPPAADNTDQLQQVGW 378 (592)
Q Consensus 319 EA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rpg--GPP~LRITgIg~p~~~~~~~L~etG~ 378 (592)
+.....+.++|.|.|.+.|--.-+|--.|+..-. ..+.++|+|++. +...|+...+
T Consensus 93 ~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di----s~~~L~~Ar~ 150 (264)
T smart00138 93 ASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI----DLKALEKARA 150 (264)
T ss_pred HhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC----CHHHHHHHHc
Confidence 3333456799999999999887777666654321 134689999984 4556655544
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.46 E-value=9.8 Score=37.24 Aligned_cols=111 Identities=16% Similarity=0.283 Sum_probs=63.3
Q ss_pred HHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCcee
Q 043131 312 TANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEF 391 (592)
Q Consensus 312 tANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpF 391 (592)
++...|++++.-...-+|+|+|.|.|.-- ..||.+ + .++|||+. +...++.+ .+.++.-|++.
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a----~~la~~-g----~~V~~iD~----s~~~l~~a----~~~~~~~~~~v 79 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNS----LYLSLA-G----YDVRAWDH----NPASIASV----LDMKARENLPL 79 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHH----HHHHHC-C----CeEEEEEC----CHHHHHHH----HHHHHHhCCCc
Confidence 56678888887655679999999999833 344444 3 48999984 23344333 33445556664
Q ss_pred EEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEE
Q 043131 392 EYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIF 452 (592)
Q Consensus 392 eF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVv 452 (592)
.+... .+.... + .. .-+.++.+. .+|++.. ..+..+++.+ +.|+|.=.
T Consensus 80 ~~~~~---d~~~~~---~--~~-~fD~I~~~~--~~~~~~~--~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 80 RTDAY---DINAAA---L--NE-DYDFIFSTV--VFMFLQA--GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred eeEec---cchhcc---c--cC-CCCEEEEec--ccccCCH--HHHHHHHHHHHHHhCCCcE
Confidence 44321 111111 1 11 124444443 4566532 3456777765 67899965
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=80.62 E-value=51 Score=33.97 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCC
Q 043131 311 FTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGP 364 (592)
Q Consensus 311 ftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~ 364 (592)
+-+.+.|++.+.-...-+|+|+|.+.|.-- ..|+.+.+ .++|||+.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~ 83 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDI 83 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEEC
Confidence 344567777776566678999999999832 34444332 48999984
No 21
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=80.01 E-value=11 Score=40.63 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=67.7
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHc---CceeEEee--eecC
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESI---HVEFEYRG--FVAN 399 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~l---gVpFeF~~--v~~~ 399 (592)
...+|+|++.|.|.= |.+-...+.+ ++.||+. ....+++..+|..+.-+.. ...+.|.. +..+
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~i~-----~~vg~Di----s~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAKIK-----HYVGIDI----SEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD 129 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT-S-----EEEEEES-----HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST
T ss_pred CCCeEEEecCCCchh---HHHHHhcCCC-----EEEEEeC----CHHHHHHHHHHHHHhccccccccccccchhheeccc
Confidence 678999999998862 3333333322 5778884 3678999988886655332 22233322 2232
Q ss_pred CcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEE
Q 043131 400 SLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTV 454 (592)
Q Consensus 400 sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtl 454 (592)
....--...+ .+.....=+|+|+|.||...........+|+.| +.|+|.-+++
T Consensus 130 ~f~~~l~~~~--~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 130 CFSESLREKL--PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TCCSHHHCTS--SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccchhhhhc--cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 2211101111 211246789999999999998666677788877 7789987766
No 22
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=79.59 E-value=0.95 Score=40.21 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.9
Q ss_pred chhhhhhhCCcccCCcHHHHHHHHHH
Q 043131 38 MDELLAVLGYNVRSSDMVEVAQKIEQ 63 (592)
Q Consensus 38 ~d~~la~~gy~v~~~~m~~vaqkle~ 63 (592)
|--|||+|||+|..+||+++|+++.+
T Consensus 51 ~a~lLa~L~~~v~~~~i~~~~~~~~~ 76 (91)
T PF05269_consen 51 MAMLLAALELGVEDSEIARVAKQAAE 76 (91)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHH
Confidence 77899999999999999999998866
No 23
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=79.01 E-value=26 Score=37.57 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=57.7
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHH-Hc-CceeEEeeeecCCcc
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAE-SI-HVEFEYRGFVANSLA 402 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~-~l-gVpFeF~~v~~~sle 402 (592)
+...|+|+|.|.|. +...|+.+ | .++|||+. +...++...++..+.-. .. +...+|.. .+++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~----S~~ml~~A~~~~~~~~~~~~~~~~~~f~~---~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDI----SAAMVAEAERRAKEALAALPPEVLPKFEA---NDLE 207 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEEC----CHHHHHHHHHHHHhcccccccccceEEEE---cchh
Confidence 34689999999997 45556654 3 48999984 45566655555432100 00 22344543 2233
Q ss_pred cCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEE
Q 043131 403 DLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVA 455 (592)
Q Consensus 403 dl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlv 455 (592)
+++ +.-+.+ -|...|||+.+ .....+++.++.+.|+.+++.
T Consensus 208 ~l~--------~~fD~V--v~~~vL~H~p~--~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 208 SLS--------GKYDTV--TCLDVLIHYPQ--DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcC--------CCcCEE--EEcCEEEecCH--HHHHHHHHHHHhhcCCEEEEE
Confidence 321 111222 24445666543 245678888888888888774
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=77.75 E-value=18 Score=37.67 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=54.5
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcc
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDAS 407 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~ 407 (592)
+|+|+|.|.|. +...||.+ | .++|||+. +...++ .+.+.|+..++.+++... .+.+.
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~----s~~ai~----~~~~~~~~~~l~v~~~~~---D~~~~--- 179 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDI----NQQSLE----NLQEIAEKENLNIRTGLY---DINSA--- 179 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEEC----CHHHHH----HHHHHHHHcCCceEEEEe---chhcc---
Confidence 89999999997 44455554 3 58999984 334443 334455666776655432 12211
Q ss_pred cccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEE
Q 043131 408 MLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFT 453 (592)
Q Consensus 408 ~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvt 453 (592)
.+ . +.-+.++.+. .||++. +..+..+|+.+ +.|+|.-+.
T Consensus 180 ~~--~-~~fD~I~~~~--vl~~l~--~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 180 SI--Q-EEYDFILSTV--VLMFLN--RERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred cc--c-CCccEEEEcc--hhhhCC--HHHHHHHHHHHHHhcCCCcEE
Confidence 11 1 1123444444 467663 23466777665 678997653
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=77.53 E-value=26 Score=35.37 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=62.2
Q ss_pred HHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeE
Q 043131 313 ANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFE 392 (592)
Q Consensus 313 ANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFe 392 (592)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.. ...++...+++ -..+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s----~~~i~~a~~~~--------~~~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSS----PAMLAEARSRL--------PDCQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHhC--------CCCe
Confidence 35667777765666789999999994 445566552 33689999842 33443333321 1233
Q ss_pred EeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEecC
Q 043131 393 YRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQE 458 (592)
Q Consensus 393 F~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvEqE 458 (592)
|.. .+.+++.+. ..-+.++ |.+.||++.+ ....+-+..+.|+|.-.+++...
T Consensus 80 ~~~---~d~~~~~~~------~~fD~v~--~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 80 FVE---ADIASWQPP------QALDLIF--ANASLQWLPD---HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEE---CchhccCCC------CCccEEE--EccChhhCCC---HHHHHHHHHHhcCCCcEEEEECC
Confidence 332 122222110 0113444 4456777743 23334444577899988877543
No 26
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=77.06 E-value=30 Score=36.39 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEee
Q 043131 316 AILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395 (592)
Q Consensus 316 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~ 395 (592)
.|.+++.. ...|||+|.|.|.-=..|+++|.. ..++|||+. +.+.|+...++|.+ +.-++.+++
T Consensus 56 ~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDi----S~~mL~~a~~~l~~--~~p~~~v~~-- 119 (301)
T TIGR03438 56 EIAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDI----SADALKESAAALAA--DYPQLEVHG-- 119 (301)
T ss_pred HHHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEEC----CHHHHHHHHHHHHh--hCCCceEEE--
Confidence 35555532 346999999999866677777742 378999994 46778888887753 112444443
Q ss_pred eecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEec
Q 043131 396 FVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAEQ 457 (592)
Q Consensus 396 v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvEq 457 (592)
+.. +..+... .+. ....+..+++.+...+|++. +.....+|+.| +.|+|.=..++.-
T Consensus 120 i~g-D~~~~~~-~~~-~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 120 ICA-DFTQPLA-LPP-EPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEE-cccchhh-hhc-ccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 222 2222100 000 00012466666656677763 34456788877 5689976555433
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=76.98 E-value=33 Score=34.10 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=55.9
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcc
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDAS 407 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~ 407 (592)
.|+|+|.|.|..-..|.+.+ |..++|||+. +.+.++...+++. ++. |.. . .+.+ +
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDi----S~~~l~~A~~~~~------~~~--~~~--~-d~~~--~- 100 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEI----NEYAVEKAKAYLP------NIN--IIQ--G-SLFD--P- 100 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEEC----CHHHHHHHHhhCC------CCc--EEE--e-eccC--C-
Confidence 49999999996444443322 2358999984 3445554433221 232 221 1 1111 1
Q ss_pred cccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEecCC
Q 043131 408 MLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEA 459 (592)
Q Consensus 408 ~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvEqEa 459 (592)
.. ++..=+|-|...|||+. +..+..+++.+.+..=+.++++|...
T Consensus 101 ---~~--~~sfD~V~~~~vL~hl~--p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ---FK--DNFFDLVLTKGVLIHIN--PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CC--CCCEEEEEECChhhhCC--HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 11 12222333455577772 45678888888887777888888654
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=74.80 E-value=34 Score=37.96 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=70.6
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR 394 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~ 394 (592)
..|++.+.....-+|+|+|.|.|. +...|+.+ + -++|||+. +...++.. .++ . ...-..+|.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~----~~~~la~~-~----~~v~giD~----s~~~l~~a-~~~---~-~~~~~i~~~ 88 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGR----FTGELAKK-A----GQVIALDF----IESVIKKN-ESI---N-GHYKNVKFM 88 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCH----HHHHHHhh-C----CEEEEEeC----CHHHHHHH-HHH---h-ccCCceEEE
Confidence 456666665444489999999996 44445544 2 27999984 33444332 111 1 111122332
Q ss_pred eeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEecCCCCC--------CCc
Q 043131 395 GFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAEQEANHN--------GPV 465 (592)
Q Consensus 395 ~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvEqEanhN--------sp~ 465 (592)
. .++.+. .+.+. ++..=+|-|.+.||++.+ ..+..+|..+ |-|+|.-.++....+-++ .|+
T Consensus 89 ~---~d~~~~---~~~~~--~~~fD~I~~~~~l~~l~~--~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~ 158 (475)
T PLN02336 89 C---ADVTSP---DLNIS--DGSVDLIFSNWLLMYLSD--KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPT 158 (475)
T ss_pred E---eccccc---ccCCC--CCCEEEEehhhhHHhCCH--HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCC
Confidence 2 112111 11121 223334445567888843 2356777766 558999877753222221 233
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 043131 466 FLDRFTESLHYYSTMFDS 483 (592)
Q Consensus 466 Fl~RF~EAL~yYsalFDS 483 (592)
+. -...+|..+|..
T Consensus 159 ~~----~~~~~~~~~f~~ 172 (475)
T PLN02336 159 HY----REPRFYTKVFKE 172 (475)
T ss_pred ee----cChHHHHHHHHH
Confidence 32 125577777766
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=73.51 E-value=38 Score=33.16 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eE
Q 043131 314 NQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FE 392 (592)
Q Consensus 314 NQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-Fe 392 (592)
.+.+++.+.....-.|+|+|.|.|. +...||.+ + .++|||+. +...++...++ ++..++. .+
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~----S~~~i~~a~~~----~~~~~~~~v~ 81 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDK----NPMSIANLERI----KAAENLDNLH 81 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeC----CHHHHHHHHHH----HHHcCCCcce
Confidence 4456666655455689999999997 33445554 2 48999984 33444433322 3334543 33
Q ss_pred EeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEE
Q 043131 393 YRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTV 454 (592)
Q Consensus 393 F~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtl 454 (592)
+.. .++.++. +. +.-+.++.+. .+|++. +..+..+++.+ +.|+|.=.++
T Consensus 82 ~~~---~d~~~~~-----~~-~~fD~I~~~~--~~~~~~--~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 82 TAV---VDLNNLT-----FD-GEYDFILSTV--VLMFLE--AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred EEe---cChhhCC-----cC-CCcCEEEEec--chhhCC--HHHHHHHHHHHHHHcCCCcEEE
Confidence 322 1233322 11 1124454443 456652 23456677655 7789988643
No 30
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=70.20 E-value=37 Score=34.02 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR 394 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~ 394 (592)
..|++|++--+.--++|+|.|.|. -+| -||.+ | +.+|+++. +...+ .+|.+.|+.-+++.+..
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GR--Nal--yLA~~--G---~~VtAvD~----s~~al----~~l~~~a~~~~l~i~~~ 82 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGR--NAL--YLASQ--G---FDVTAVDI----SPVAL----EKLQRLAEEEGLDIRTR 82 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSH--HHH--HHHHT--T----EEEEEES----SHHHH----HHHHHHHHHTT-TEEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcH--HHH--HHHHC--C---CeEEEEEC----CHHHH----HHHHHHHhhcCceeEEE
Confidence 447778776667789999999985 122 24443 3 78999983 33444 45788899999996666
Q ss_pred eeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHH-hcCCcEEEEE
Q 043131 395 GFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVK-NIKPDIFTVA 455 (592)
Q Consensus 395 ~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir-~L~PkVvtlv 455 (592)
.. ++++. .+ . ++.=+|.+...+++|. +..++.++..++ .++|.-+.+.
T Consensus 83 ~~---Dl~~~---~~--~---~~yD~I~st~v~~fL~--~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 83 VA---DLNDF---DF--P---EEYDFIVSTVVFMFLQ--RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp E----BGCCB---S---T---TTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred Ee---cchhc---cc--c---CCcCEEEEEEEeccCC--HHHHHHHHHHHHhhcCCcEEEEE
Confidence 42 23322 22 1 2344555655567764 346788888875 5799755443
No 31
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=69.74 E-value=1.4e+02 Score=30.88 Aligned_cols=191 Identities=20% Similarity=0.262 Sum_probs=108.8
Q ss_pred hhCChhHHH-HHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHH
Q 043131 301 ETCPYLKFA-HFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWK 379 (592)
Q Consensus 301 e~~P~lkFA-hftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~r 379 (592)
....++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|- |.-+ |+.+-| .-+|||++. +...|....+|
T Consensus 26 ~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd-~a~~---~~k~~g---~g~v~~~D~----s~~ML~~a~~k 94 (238)
T COG2226 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD-MALL---LAKSVG---TGEVVGLDI----SESMLEVAREK 94 (238)
T ss_pred hhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH-HHHH---HHHhcC---CceEEEEEC----CHHHHHHHHHH
Confidence 356677775 46667777777654467899999999885 3333 333322 679999994 45677666666
Q ss_pred HHHHHHHcCce-eEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEec
Q 043131 380 LAQLAESIHVE-FEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAEQ 457 (592)
Q Consensus 380 L~~fA~~lgVp-FeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvEq 457 (592)
+. ..|+. ++|.. + +.++|. +. |+-.=+|.+.|.||++.+ ++.+|+-+ |=|+|...+++-.
T Consensus 95 ~~----~~~~~~i~fv~--~-dAe~LP-----f~--D~sFD~vt~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 95 LK----KKGVQNVEFVV--G-DAENLP-----FP--DNSFDAVTISFGLRNVTD----IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hh----ccCccceEEEE--e-chhhCC-----CC--CCccCEEEeeehhhcCCC----HHHHHHHHHHhhcCCeEEEEEE
Confidence 54 33332 44442 2 233332 32 455667888899998854 56777655 6689998776533
Q ss_pred CCCCCCCchHHHHHHHHH-HHHH-HhhhhhccCCCCchHHHHHHHHhhcccchhhcccCCCccccccChHHHHHHHHcCC
Q 043131 458 EANHNGPVFLDRFTESLH-YYST-MFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAG 535 (592)
Q Consensus 458 EanhNsp~Fl~RF~EAL~-yYsa-lFDSLea~~~~~s~~r~~~E~~lgreI~NiVAcEG~~RvERhE~~~qWr~Rm~~AG 535 (592)
=..+..+. |...++ ||.. ++=.+......+.... .||.+-| +++-+.+.-...|..+|
T Consensus 157 ~~~p~~~~----~~~~~~~~~~~~v~P~~g~~~~~~~~~y----~yL~eSi------------~~~p~~~~l~~~~~~~g 216 (238)
T COG2226 157 FSKPDNPV----LRKAYILYYFKYVLPLIGKLVAKDAEAY----EYLAESI------------RRFPDQEELKQMIEKAG 216 (238)
T ss_pred cCCCCchh----hHHHHHHHHHHhHhhhhceeeecChHHH----HHHHHHH------------HhCCCHHHHHHHHHhcC
Confidence 33333333 333444 4444 4444443332111111 2333333 23334456666777788
Q ss_pred Ccccc
Q 043131 536 FIPAH 540 (592)
Q Consensus 536 F~pvp 540 (592)
|..+.
T Consensus 217 f~~i~ 221 (238)
T COG2226 217 FEEVR 221 (238)
T ss_pred ceEEe
Confidence 88664
No 32
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=68.59 E-value=31 Score=37.94 Aligned_cols=109 Identities=11% Similarity=0.154 Sum_probs=58.1
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcc
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDAS 407 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~ 407 (592)
+|+|+|.|.|. +--.|+.+. |..+||+|+. +...++-+.+++......-.-.++|. ..+-++++...
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~----S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~ 297 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDE----SPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPF 297 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEEC----CHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCC
Confidence 79999999997 444555542 5679999994 45566665555532211100134443 22222222111
Q ss_pred cccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEEEEEec
Q 043131 408 MLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIFTVAEQ 457 (592)
Q Consensus 408 ~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVvtlvEq 457 (592)
.-+.++.|-.|...+-... .....+++ .-+-|+|.-.+.++.
T Consensus 298 -------~fDlIlsNPPfh~~~~~~~-~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 -------RFNAVLCNPPFHQQHALTD-NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -------CEEEEEECcCcccCccCCH-HHHHHHHHHHHHhcccCCEEEEEE
Confidence 1257777766643221111 12344554 446789987777653
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=68.30 E-value=1.2e+02 Score=29.25 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=60.6
Q ss_pred HHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCcee
Q 043131 312 TANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEF 391 (592)
Q Consensus 312 tANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpF 391 (592)
..-+.+++.+.......|+|+|.+.|. +...++.+ +|+..++++|+. +...++.+.+++. .+-..
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~----~~~~~~~~~~~~~-----~~~~i 90 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDF----SSEMLEVAKKKSE-----LPLNI 90 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEEC----CHHHHHHHHHHhc-----cCCCc
Confidence 344556666665567799999999986 33333333 233478999984 2344444444432 22223
Q ss_pred EEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHH-HHhcCCcEEEE-EecC
Q 043131 392 EYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSV-VKNIKPDIFTV-AEQE 458 (592)
Q Consensus 392 eF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~-Ir~L~PkVvtl-vEqE 458 (592)
.|.. .+..++. .. ++..=+|-+.+.+|++.+ .+.+|+. .+.|+|.-.++ +|..
T Consensus 91 ~~~~---~d~~~~~-----~~--~~~~D~i~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 91 EFIQ---ADAEALP-----FE--DNSFDAVTIAFGLRNVTD----IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred eEEe---cchhcCC-----CC--CCcEEEEEEeeeeCCccc----HHHHHHHHHHHcCCCcEEEEEEec
Confidence 3332 1222221 11 112333334455676532 3445554 46678876655 4544
No 34
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=66.06 E-value=13 Score=34.45 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=28.4
Q ss_pred hCCCCeeEEEecccCCCCchHHHHHHHhcCCC-CCCeeEEeecCC
Q 043131 321 FDGKRRVHVIDFSMNQGMQWPALMQALALRPG-GPPAFRLTGIGP 364 (592)
Q Consensus 321 ~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rpg-GPP~LRITgIg~ 364 (592)
-...+..+|||||-|.|. |=+.|+..-. -.|.++|+||+.
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~ 61 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDC 61 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEEC
Confidence 345789999999999996 5555554110 026799999994
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=61.02 E-value=71 Score=31.44 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhC--CCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 308 FAHFTANQAILEAFD--GKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 308 FAhftANQAILEA~~--g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
.+|-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+ + .+||||+. +.+.++...+++
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~----s~~~i~~a~~~~ 97 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDI----SEQMVQMARNRA 97 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEEC----CHHHHHHHHHHH
Confidence 345556667777776 3456789999999996 55666654 1 38999984 344555444444
No 36
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=59.63 E-value=53 Score=32.86 Aligned_cols=111 Identities=24% Similarity=0.255 Sum_probs=58.0
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR 394 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~ 394 (592)
..+++++.=.+.-+|||+|-+.|. +..+|+.+ =|.+|+|..+.|. .++. ++. .=..+|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~---~P~l~~~v~Dlp~-----v~~~-~~~--------~~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARA---YPNLRATVFDLPE-----VIEQ-AKE--------ADRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHH---STTSEEEEEE-HH-----HHCC-HHH--------TTTEEEE
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHH---CCCCcceeeccHh-----hhhc-ccc--------ccccccc
Confidence 456667665556689999999995 33444333 2678999999662 1211 111 2223333
Q ss_pred eeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCc---EEEEEecCCCC
Q 043131 395 GFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPD---IFTVAEQEANH 461 (592)
Q Consensus 395 ~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~Pk---VvtlvEqEanh 461 (592)
+- +-++. + |. .+++.+. .-||...+ .....+|+.+ +.|+|. .++|+|.=.+.
T Consensus 149 ~g--d~f~~-----~---P~-~D~~~l~--~vLh~~~d--~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 149 PG--DFFDP-----L---PV-ADVYLLR--HVLHDWSD--EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ES---TTTC-----C---SS-ESEEEEE--SSGGGS-H--HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred cc--cHHhh-----h---cc-ccceeee--hhhhhcch--HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 31 11111 1 21 2344443 44676644 2345566655 778886 66667764443
No 37
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=59.39 E-value=1.8e+02 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=26.5
Q ss_pred HHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCC
Q 043131 317 ILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGP 364 (592)
Q Consensus 317 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~ 364 (592)
+++.+.-....+|+|+|.|.|. +...++.+ +|+..++|+++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~ 84 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDF 84 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeC
Confidence 4444443345789999999986 23333332 234679999985
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=59.13 E-value=1.3e+02 Score=33.36 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=62.5
Q ss_pred HHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEE
Q 043131 314 NQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEY 393 (592)
Q Consensus 314 NQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF 393 (592)
...+++.+.-...-+|+|+|.|.|. +...|+.+.+ .++|||+.. ...++...++. ...+...+|
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS----~~~l~~A~~~~----~~~~~~v~~ 318 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS----VNMISFALERA----IGRKCSVEF 318 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC----HHHHHHHHHHh----hcCCCceEE
Confidence 3556666543445689999999995 4455666553 489999952 34454433322 233334555
Q ss_pred eeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHH-HHhcCCcEEEEEe
Q 043131 394 RGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSV-VKNIKPDIFTVAE 456 (592)
Q Consensus 394 ~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~-Ir~L~PkVvtlvE 456 (592)
... ++.++. +. ++..=+|-|...++|+.+ + +.+|+. .|.|+|.-.+++.
T Consensus 319 ~~~---d~~~~~-----~~--~~~fD~I~s~~~l~h~~d---~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 319 EVA---DCTKKT-----YP--DNSFDVIYSRDTILHIQD---K-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEc---CcccCC-----CC--CCCEEEEEECCcccccCC---H-HHHHHHHHHHcCCCeEEEEE
Confidence 431 222211 11 122334455556777643 3 345554 5778999887764
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=57.11 E-value=1.9e+02 Score=27.96 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=50.6
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccC
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADL 404 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl 404 (592)
+..+|+|+|.|.|.-. ..|+.+ + |..++|+|+. +...++....++. . ++ +|. ..+++++
T Consensus 34 ~~~~vLDlG~G~G~~~----~~l~~~--~-~~~~~~~~D~----~~~~~~~~~~~~~----~-~~--~~~---~~d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCGTGYLT----RALLKR--F-PQAEFIALDI----SAGMLAQAKTKLS----E-NV--QFI---CGDAEKL 92 (240)
T ss_pred CCCeEEEECCCccHHH----HHHHHh--C-CCCcEEEEeC----hHHHHHHHHHhcC----C-CC--eEE---ecchhhC
Confidence 3468999999999633 333332 2 4567999984 2333433333322 0 22 222 1233332
Q ss_pred CcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 043131 405 DASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAE 456 (592)
Q Consensus 405 ~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvE 456 (592)
. .....-++++ +.+.||++.+ ...+|..+ +.|+|.-++++.
T Consensus 93 ~-----~~~~~fD~vi--~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 93 P-----LEDSSFDLIV--SNLALQWCDD----LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred C-----CCCCceeEEE--EhhhhhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 2 1111113433 4455677632 34566665 567888766653
No 40
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=56.08 E-value=9 Score=39.93 Aligned_cols=112 Identities=19% Similarity=0.356 Sum_probs=65.0
Q ss_pred CCeeEEEecccCCCCchHHHHHH------HhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeee
Q 043131 324 KRRVHVIDFSMNQGMQWPALMQA------LALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFV 397 (592)
Q Consensus 324 ~~~VHIIDfgI~~G~QWpsLiqa------LA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~ 397 (592)
.+.|||||+.= .|+-|-.| .+..+| +|--||.. +...+-+.+||+.+|.++-.+-..
T Consensus 35 RngihIIDL~k----T~~~l~~A~~~v~~~~~~~g-----~ILfVgTK--------~~a~~~V~~~A~r~g~~yV~~RwL 97 (252)
T COG0052 35 RNGIHIIDLQK----TLERLREAYKFLRRIAANGG-----KILFVGTK--------KQAQEPVKEFAERTGAYYVNGRWL 97 (252)
T ss_pred cCCcEEEEHHH----HHHHHHHHHHHHHHHHcCCC-----EEEEEech--------HHHHHHHHHHHHHhCCceecCccc
Confidence 37899999984 35555444 444444 57777742 455567889999999987644333
Q ss_pred ---cCCcccCCccccccc-----C-C------CCceEEEEeccchhcccCCCChHHHHHHHHHhcC--CcEEEEEecCCC
Q 043131 398 ---ANSLADLDASMLEIK-----P-S------EVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIK--PDIFTVAEQEAN 460 (592)
Q Consensus 398 ---~~sledl~~~~L~lr-----~-~------~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~--PkVvtlvEqEan 460 (592)
..+|..+..+.-.++ . + +.|++- |. .+...++++|.-||.|+ |+++++++...+
T Consensus 98 gG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~------l~---re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e 168 (252)
T COG0052 98 GGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALM------LT---RELEKLEKSLGGIKDMKGLPDVLFVIDPRKE 168 (252)
T ss_pred CccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHH------HH---HHHHHHHHhhcchhhccCCCCEEEEeCCcHh
Confidence 222323222110000 0 0 112221 11 12345688888899886 999999988655
Q ss_pred C
Q 043131 461 H 461 (592)
Q Consensus 461 h 461 (592)
+
T Consensus 169 ~ 169 (252)
T COG0052 169 K 169 (252)
T ss_pred H
Confidence 4
No 41
>PRK14968 putative methyltransferase; Provisional
Probab=54.19 E-value=1.4e+02 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=28.4
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
+.-.|+|+|.+.|. +...|+.+ + .++||++. +.+.++.+.+++
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~----s~~~~~~a~~~~ 65 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDI----NPYAVECAKCNA 65 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEEC----CHHHHHHHHHHH
Confidence 34469999999998 55566655 2 58999983 344555444444
No 42
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=53.95 E-value=45 Score=27.08 Aligned_cols=93 Identities=24% Similarity=0.229 Sum_probs=49.5
Q ss_pred EecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcccc
Q 043131 330 IDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASML 409 (592)
Q Consensus 330 IDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~~L 409 (592)
+|+|.|.|.....|.+. +..++|++++ +...++...+ ..+..++. |. ..+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~----~~~~~~~~~~----~~~~~~~~--~~---~~d~~~l----- 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDI----SEEMLEQARK----RLKNEGVS--FR---QGDAEDL----- 54 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-----HHHHHHHHH----HTTTSTEE--EE---ESBTTSS-----
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeC----CHHHHHHHHh----cccccCch--he---eehHHhC-----
Confidence 58888888755555444 3468999984 3344443333 23334555 22 2233333
Q ss_pred cccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEE
Q 043131 410 EIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTV 454 (592)
Q Consensus 410 ~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtl 454 (592)
.+. ++-.=+|-+...+|++ .....+|+.+ |-|+|.=..+
T Consensus 55 ~~~--~~sfD~v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 55 PFP--DNSFDVVFSNSVLHHL----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SS---TT-EEEEEEESHGGGS----SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccc--cccccccccccceeec----cCHHHHHHHHHHHcCcCeEEe
Confidence 222 2345466666678887 3455566554 6778765544
No 43
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=53.76 E-value=1.4e+02 Score=31.53 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=58.0
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcccCC
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLADLD 405 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sledl~ 405 (592)
-+|+|++.|.|. +--.||.+ + -+++||+ .+...++.+.++ |+..|++ .+|.. .+.+++.
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD----~s~~av~~A~~n----~~~~~l~~v~~~~---~D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP-G----MQLTGIE----ISAEAIACAKQS----AAELGLTNVQFQA---LDSTQFA 234 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc-C----CEEEEEe----CCHHHHHHHHHH----HHHcCCCceEEEE---cCHHHHH
Confidence 579999999996 44445543 2 3899998 345556554433 3455653 55543 2233221
Q ss_pred cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEe
Q 043131 406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAE 456 (592)
Q Consensus 406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvE 456 (592)
.. .. +.-+.+++|=. +.+.-+.++..+.+++|+-++.+.
T Consensus 235 ~~---~~-~~~D~Vv~dPP--------r~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 235 TA---QG-EVPDLVLVNPP--------RRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred Hh---cC-CCCeEEEECCC--------CCCccHHHHHHHHHcCCCeEEEEE
Confidence 11 10 01257777721 334456788889999999888864
No 44
>PRK05785 hypothetical protein; Provisional
Probab=53.02 E-value=1.1e+02 Score=30.77 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred eeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCC
Q 043131 326 RVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLD 405 (592)
Q Consensus 326 ~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~ 405 (592)
.-.|+|+|.|.|.- ...|+.+.+ .++|||+. +.+.|+....+ .. + + ..+.+++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~----S~~Ml~~a~~~---------~~--~--~-~~d~~~l- 104 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDY----AENMLKMNLVA---------DD--K--V-VGSFEAL- 104 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECC----CHHHHHHHHhc---------cc--e--E-EechhhC-
Confidence 34799999999953 334444432 48999994 34445432211 11 1 1 1223332
Q ss_pred cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEec
Q 043131 406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAEQ 457 (592)
Q Consensus 406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvEq 457 (592)
... ++..=+|-|.+.||++.+ .+.+|+.+ |-|+|.+ +++|-
T Consensus 105 ----p~~--d~sfD~v~~~~~l~~~~d----~~~~l~e~~RvLkp~~-~ile~ 146 (226)
T PRK05785 105 ----PFR--DKSFDVVMSSFALHASDN----IEKVIAEFTRVSRKQV-GFIAM 146 (226)
T ss_pred ----CCC--CCCEEEEEecChhhccCC----HHHHHHHHHHHhcCce-EEEEe
Confidence 222 234445555667888643 45566655 5678854 34443
No 45
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=51.55 E-value=1.2e+02 Score=32.81 Aligned_cols=159 Identities=20% Similarity=0.311 Sum_probs=91.1
Q ss_pred CCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce--eEEeeeecC
Q 043131 322 DGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE--FEYRGFVAN 399 (592)
Q Consensus 322 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp--FeF~~v~~~ 399 (592)
+..+.|||+|.--|+|- -++.+|..-|..|-+++|--..+ ..-+-|+.|. ++.|+. ++|...-+
T Consensus 132 ~~g~pvrIlDIAaG~GR---YvlDal~~~~~~~~~i~LrDys~-------~Nv~~g~~li---~~~gL~~i~~f~~~dA- 197 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGR---YVLDALEKHPERPDSILLRDYSP-------INVEKGRALI---AERGLEDIARFEQGDA- 197 (311)
T ss_pred hcCCceEEEEeccCCcH---HHHHHHHhCCCCCceEEEEeCCH-------HHHHHHHHHH---HHcCCccceEEEecCC-
Confidence 45689999999999995 49999998887766666655542 2225566554 444443 34543211
Q ss_pred CcccCCcccc-cccCCCCceEEEEeccchhcccCCCChHHHHHHHHHh-cCCcEEEEEecCCCCCCCchHHHHHHHHHHH
Q 043131 400 SLADLDASML-EIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKN-IKPDIFTVAEQEANHNGPVFLDRFTESLHYY 477 (592)
Q Consensus 400 sledl~~~~L-~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~-L~PkVvtlvEqEanhNsp~Fl~RF~EAL~yY 477 (592)
++...+ .+.|. -.|+|-| -|+.|..+..-+..-|..+.. +.|.-.++-=.--.|-.-.|+.|...
T Consensus 198 ----fd~~~l~~l~p~--P~l~iVs--GL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lt----- 264 (311)
T PF12147_consen 198 ----FDRDSLAALDPA--PTLAIVS--GLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLT----- 264 (311)
T ss_pred ----CCHhHhhccCCC--CCEEEEe--cchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHh-----
Confidence 222221 12221 2455544 467777765556666666644 78877777533334443333443210
Q ss_pred HHHhhhhhccCCCCchHHHHHHHHhhcccchhhcccCCCccccccChHHHHHHHHcCCCccc
Q 043131 478 STMFDSLEGSVNSPENHKAMTEAYMGNQICNVVACEGADRVERHETLAQWRTRFSSAGFIPA 539 (592)
Q Consensus 478 salFDSLea~~~~~s~~r~~~E~~lgreI~NiVAcEG~~RvERhE~~~qWr~Rm~~AGF~pv 539 (592)
|. .+|..=|=|+-+...=....+.|||+-+
T Consensus 265 --------------sH------------------r~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 265 --------------SH------------------RDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred --------------cc------------------cCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 00 1344445555667777778889999733
No 46
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=51.36 E-value=1.2e+02 Score=32.76 Aligned_cols=101 Identities=23% Similarity=0.257 Sum_probs=57.8
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcc
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDAS 407 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~ 407 (592)
+|+|||.|.|. +-..|+.+ -|..++|+|+. +...++...+++. ..++..+|.. .+-++.+
T Consensus 199 ~VLDlGCG~G~----ls~~la~~---~p~~~v~~vDi----s~~Al~~A~~nl~----~n~l~~~~~~--~D~~~~~--- 258 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARH---SPKIRLTLSDV----SAAALESSRATLA----ANGLEGEVFA--SNVFSDI--- 258 (342)
T ss_pred eEEEeccCcCH----HHHHHHHh---CCCCEEEEEEC----CHHHHHHHHHHHH----HcCCCCEEEE--ccccccc---
Confidence 69999999997 44455544 14478999994 4556666655553 3455555542 2212211
Q ss_pred cccccCCCCceEEEEeccchhcccCC-CChHHHHHHH-HHhcCCcEEEEE
Q 043131 408 MLEIKPSEVDSVAVNSVFELHKLLAQ-PGAIDKVLSV-VKNIKPDIFTVA 455 (592)
Q Consensus 408 ~L~lr~~~~EaLaVN~~f~LH~Ll~~-~~~~~~~L~~-Ir~L~PkVvtlv 455 (592)
.+.-+.++.|-.| |.-... ....+.+++. .+-|+|.=..++
T Consensus 259 -----~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 259 -----KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred -----CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 1123677777654 543321 1234566665 466899766654
No 47
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=49.62 E-value=1.5e+02 Score=31.87 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=85.7
Q ss_pred HHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEe
Q 043131 316 AILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYR 394 (592)
Q Consensus 316 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~ 394 (592)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+-.+|+ -+.+.|++...+|. .-..| .+++
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plD----IS~~~L~~a~~~L~----~~~~p~l~v~ 135 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALD----VSRSELQRTLAELP----LGNFSHVRCA 135 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEE----CCHHHHHHHHHhhh----hccCCCeEEE
Confidence 3555553 23379999999999999999999732 21 35778888 35678988888886 12234 6777
Q ss_pred eeecCCcccCCc-ccccccCCCCceEEEEec-cchhcccCCCChHHHHHHHHHh--cCCcEEEEEecCCC---------C
Q 043131 395 GFVANSLADLDA-SMLEIKPSEVDSVAVNSV-FELHKLLAQPGAIDKVLSVVKN--IKPDIFTVAEQEAN---------H 461 (592)
Q Consensus 395 ~v~~~sledl~~-~~L~lr~~~~EaLaVN~~-f~LH~Ll~~~~~~~~~L~~Ir~--L~PkVvtlvEqEan---------h 461 (592)
+|..+--+.+.. ..-... ....+|-+. ..+.++ .+.....||+.+++ |+|.=..++=-|.. .
T Consensus 136 ~l~gdy~~~l~~l~~~~~~---~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY 210 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRPENR---SRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY 210 (319)
T ss_pred EEEecHHHHHhhccccccc---CCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence 775532111110 000011 122222222 234443 23456789999987 88876665533432 2
Q ss_pred CCC--chHHHHHHHHHHHHHHhhh
Q 043131 462 NGP--VFLDRFTESLHYYSTMFDS 483 (592)
Q Consensus 462 Nsp--~Fl~RF~EAL~yYsalFDS 483 (592)
|.+ .......+.|++--..++.
T Consensus 211 ~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 211 NDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred cCCcchhHHHHHHHHHHHHHHhCc
Confidence 322 2333345667777766654
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=48.91 E-value=2.5e+02 Score=27.29 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=50.9
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcccCC
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLADLD 405 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sledl~ 405 (592)
-+|+|+|.|.|. .++.=+.. . |..++|||+. +...++.+ .+.++..|++ ++|.. .+.+++.
T Consensus 44 ~~vLDiGcGtG~--~s~~la~~-~----~~~~V~~iD~----s~~~~~~a----~~~~~~~~~~~i~~i~---~d~~~~~ 105 (181)
T TIGR00138 44 KKVIDIGSGAGF--PGIPLAIA-R----PELKLTLLES----NHKKVAFL----REVKAELGLNNVEIVN---GRAEDFQ 105 (181)
T ss_pred CeEEEecCCCCc--cHHHHHHH-C----CCCeEEEEeC----cHHHHHHH----HHHHHHhCCCCeEEEe---cchhhcc
Confidence 389999999994 22221221 2 3468999984 23334333 2334455663 45443 2344431
Q ss_pred cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 043131 406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAE 456 (592)
Q Consensus 406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvE 456 (592)
. . +.-+.++.|+ +|. .+.++..+ +-|+|.-.++++
T Consensus 106 ~-----~-~~fD~I~s~~---~~~-------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 H-----E-EQFDVITSRA---LAS-------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred c-----c-CCccEEEehh---hhC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 1 1 1124666654 343 33455554 447998888875
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=48.83 E-value=2.1e+02 Score=27.24 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=31.6
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR 394 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~ 394 (592)
.|+|+|.|.|. +...++.+ |+ +++||+. +.+.++.+.+++. ..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~----s~~~~~~a~~~~~----~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDI----NPFAVKELRENAK----LNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEEC----CHHHHHHHHHHHH----HcCCceEEE
Confidence 49999999995 55556654 33 8999983 4555655555553 344444443
No 50
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=46.65 E-value=8.2 Score=32.86 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=19.0
Q ss_pred EecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCC
Q 043131 330 IDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPP 365 (592)
Q Consensus 330 IDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p 365 (592)
+|+|.|.|.==..|++.+ |..++||++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s 29 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDIS 29 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECC
Confidence 478888887444555554 78999999854
No 51
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=46.55 E-value=1.6e+02 Score=29.81 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce--eE
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE--FE 392 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp--Fe 392 (592)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|||+. +.+.++...+++ +..|+. .+
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~----s~~~l~~a~~~~----~~~g~~~~v~ 96 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDL----SAEMIQRAKQAA----EAKGVSDNMQ 96 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEEC----CHHHHHHHHHHH----HhcCCccceE
Confidence 45777765 344599999999994 55566655 2 48999984 344555444433 334542 33
Q ss_pred EeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEE
Q 043131 393 YRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVA 455 (592)
Q Consensus 393 F~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlv 455 (592)
|.. .+..++... ..+.-+.++ |...||++.+ +...+-...+-|+|.=.+++
T Consensus 97 ~~~---~d~~~l~~~----~~~~fD~V~--~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FIH---CAAQDIAQH----LETPVDLIL--FHAVLEWVAD---PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEE---cCHHHHhhh----cCCCCCEEE--ehhHHHhhCC---HHHHHHHHHHHcCCCeEEEE
Confidence 322 223333211 011113333 4455777743 33333344577899877764
No 52
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=46.53 E-value=37 Score=25.70 Aligned_cols=38 Identities=8% Similarity=0.310 Sum_probs=25.3
Q ss_pred ceEEEEecc-chhcccCCCChHHHHHHHHHhcCCcEEEEEe
Q 043131 417 DSVAVNSVF-ELHKLLAQPGAIDKVLSVVKNIKPDIFTVAE 456 (592)
Q Consensus 417 EaLaVN~~f-~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvE 456 (592)
|.+-|||.. .++ +.+ -...+.++.+|+.++|+-+++|-
T Consensus 1 e~i~v~a~v~~~~-fSg-Had~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 1 EMIPVRARVEQID-FSG-HADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp CEEE--SEEEESG-CSS-S-BHHHHHHHHHHHCSSEEEEES
T ss_pred CEEEeEEEEEEEe-ecC-CCCHHHHHHHHHhcCCCEEEEec
Confidence 345567643 344 433 35688999999999999999983
No 53
>PLN02244 tocopherol O-methyltransferase
Probab=46.12 E-value=3.6e+02 Score=28.90 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=54.3
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCc--eeEEeeeecCCcc
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHV--EFEYRGFVANSLA 402 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgV--pFeF~~v~~~sle 402 (592)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+. +...++.. .+.++..|+ ..+|.. . +..
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~----s~~~i~~a----~~~~~~~g~~~~v~~~~--~-D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITL----SPVQAARA----NALAAAQGLSDKVSFQV--A-DAL 178 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEEC----CHHHHHHH----HHHHHhcCCCCceEEEE--c-Ccc
Confidence 34479999999996 5556666543 48999984 23333322 233444454 345542 2 222
Q ss_pred cCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHH-HHHhcCCcEEEE
Q 043131 403 DLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLS-VVKNIKPDIFTV 454 (592)
Q Consensus 403 dl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~-~Ir~L~PkVvtl 454 (592)
++. +. ++..=+|-|...+||+.+ ...+|+ ..|-|+|.-.++
T Consensus 179 ~~~-----~~--~~~FD~V~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQP-----FE--DGQFDLVWSMESGEHMPD----KRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCC-----CC--CCCccEEEECCchhccCC----HHHHHHHHHHHcCCCcEEE
Confidence 221 11 223334455567788753 345555 457789964443
No 54
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=46.08 E-value=2.3e+02 Score=28.98 Aligned_cols=86 Identities=20% Similarity=0.323 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHhhCChhHHHHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCC
Q 043131 290 SFSELLEMQFYETCPYLKFAHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADN 369 (592)
Q Consensus 290 s~~~~l~~~fye~~P~lkFAhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~ 369 (592)
...++...||++-...+. -+.+. ..||||.|-|-|+ |.+.=|++. |.+++|-|++-. +.
T Consensus 45 ~~~e~~~rHilDSl~~~~------------~~~~~-~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~-Kk 103 (215)
T COG0357 45 DPEELWQRHILDSLVLLP------------YLDGK-AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLG-KK 103 (215)
T ss_pred CHHHHHHHHHHHHhhhhh------------ccccc-CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCc-hH
Confidence 346777788886332111 11111 5799999998887 888888763 667899998532 11
Q ss_pred hHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcccCCc
Q 043131 370 TDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLADLDA 406 (592)
Q Consensus 370 ~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sledl~~ 406 (592)
. .-|.+.++.+|++ .++.. .+.|++..
T Consensus 104 ~-------~FL~~~~~eL~L~nv~i~~---~RaE~~~~ 131 (215)
T COG0357 104 I-------AFLREVKKELGLENVEIVH---GRAEEFGQ 131 (215)
T ss_pred H-------HHHHHHHHHhCCCCeEEeh---hhHhhccc
Confidence 1 3456667788888 77765 34555553
No 55
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=44.45 E-value=3e+02 Score=26.55 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=25.9
Q ss_pred HHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCC
Q 043131 316 AILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGP 364 (592)
Q Consensus 316 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~ 364 (592)
.|.+.+.... +|+|+|.|.|. ++..|+.+.+ .+++||+.
T Consensus 6 ~i~~~i~~~~--~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPGS--RVLDLGCGDGE----LLALLRDEKQ----VRGYGIEI 44 (194)
T ss_pred HHHHhcCCCC--EEEEeCCCCCH----HHHHHHhccC----CcEEEEeC
Confidence 4555554333 79999999995 5667765532 35689984
No 56
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=42.86 E-value=2.5e+02 Score=27.99 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=59.0
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcccCC
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLADLD 405 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sledl~ 405 (592)
-.|+|++.|.|. --+.+|+... -++|+|+. +.+.++.+.+++ +..|+. .+|.. .++.+.-
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~a-----~~V~~vE~----~~~a~~~a~~Nl----~~~~~~~v~~~~---~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRYA-----AGATLLEM----DRAVAQQLIKNL----ATLKAGNARVVN---TNALSFL 115 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcCC-----CEEEEEEC----CHHHHHHHHHHH----HHhCCCcEEEEE---chHHHHH
Confidence 368999999984 2234555321 38999983 444454444443 333442 33321 1221110
Q ss_pred cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 043131 406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKN---IKPDIFTVAEQEANHN 462 (592)
Q Consensus 406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~---L~PkVvtlvEqEanhN 462 (592)
. ... ..-+.+++|=.|. .+..+.++..|.. ++|+-++++|.....+
T Consensus 116 ~---~~~-~~fDlV~~DPPy~-------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 116 A---QPG-TPHNVVFVDPPFR-------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred h---hcC-CCceEEEECCCCC-------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 0 011 0125777775531 2456778888877 6999999999877544
No 57
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=42.81 E-value=2.1e+02 Score=31.10 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=57.5
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCc-eeEEeeeecCCcccCCc
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHV-EFEYRGFVANSLADLDA 406 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgV-pFeF~~v~~~sledl~~ 406 (592)
+|+|++.|.|. +--.||.+ + -+++||+ .+...++.+.+++ +..|+ ..+|.. .+.+++..
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE----~~~~av~~a~~N~----~~~~~~~~~~~~---~d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIE----IESEAIACAQQSA----QMLGLDNLSFAA---LDSAKFAT 295 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEE----CCHHHHHHHHHHH----HHcCCCcEEEEE---CCHHHHHH
Confidence 68999999884 33444533 2 3799998 4555665554443 34455 344542 22222211
Q ss_pred ccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEe
Q 043131 407 SMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAE 456 (592)
Q Consensus 407 ~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvE 456 (592)
. +. . .-+++++|=. +.+....++..|..++|+-+|.|+
T Consensus 296 ~-~~-~--~~D~vi~DPP--------r~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 296 A-QM-S--APELVLVNPP--------RRGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred h-cC-C--CCCEEEECCC--------CCCCcHHHHHHHHhcCCCeEEEEE
Confidence 1 10 1 1267888832 335567889999999998888876
No 58
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=42.45 E-value=1.2e+02 Score=31.77 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=69.8
Q ss_pred HHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeee
Q 043131 317 ILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGF 396 (592)
Q Consensus 317 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v 396 (592)
+|.-+.-+.---|+|+|.|-|.+=- -|+.|- |.=.||||+. +.+.|++...+| ...+|..
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDs----S~~Mla~Aa~rl--------p~~~f~~- 81 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDS----SPAMLAKAAQRL--------PDATFEE- 81 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccC----CHHHHHHHHHhC--------CCCceec-
Confidence 3344455666789999999998543 445553 3468999993 456665544443 3444432
Q ss_pred ecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 043131 397 VANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEANHNGP 464 (592)
Q Consensus 397 ~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvEqEanhNsp 464 (592)
..+.+.+++ . +-..|.-|.+| |-|.+. .+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 82 --aDl~~w~p~-----~-~~dllfaNAvl--qWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 82 --ADLRTWKPE-----Q-PTDLLFANAVL--QWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred --ccHhhcCCC-----C-ccchhhhhhhh--hhcccc---HHHHHHHHHhhCCCceEEEECCCccCch
Confidence 112222221 1 12466677765 555443 4677788899999999988777776544
No 59
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=42.24 E-value=60 Score=33.85 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=62.7
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccC
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADL 404 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl 404 (592)
...-|.|+|.|-| .|-+.||.. | .++|||+. ....++.. ...|.+-|+..+|....+ |++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~----se~~I~~A----k~ha~e~gv~i~y~~~~~---edl 118 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDA----SEKPIEVA----KLHALESGVNIDYRQATV---EDL 118 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecC----ChHHHHHH----HHhhhhccccccchhhhH---HHH
Confidence 3456899999999 588888854 3 89999993 22233221 134556688888887543 333
Q ss_pred CcccccccCCCCceEEEEeccchhcccCCCChHHHHHHH-HHhcCCcEEEEE
Q 043131 405 DASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSV-VKNIKPDIFTVA 455 (592)
Q Consensus 405 ~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~-Ir~L~PkVvtlv 455 (592)
.... +-.=+|-|+=-|+|+.+ + +.|++. .+-++|.-+++.
T Consensus 119 ~~~~-------~~FDvV~cmEVlEHv~d---p-~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 119 ASAG-------GQFDVVTCMEVLEHVPD---P-ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HhcC-------CCccEEEEhhHHHccCC---H-HHHHHHHHHHcCCCcEEEE
Confidence 3211 23446778777888754 3 345554 577799766664
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=41.64 E-value=78 Score=27.30 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=26.4
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
+|+|+|.|.|. +...|+.+. |..++|+|+. +...++.+.+++
T Consensus 22 ~vldlG~G~G~----~~~~l~~~~---~~~~v~~vD~----s~~~~~~a~~~~ 63 (124)
T TIGR02469 22 VLWDIGAGSGS----ITIEAARLV---PNGRVYAIER----NPEALRLIERNA 63 (124)
T ss_pred EEEEeCCCCCH----HHHHHHHHC---CCceEEEEcC----CHHHHHHHHHHH
Confidence 89999999986 344444442 2378999994 334454444433
No 61
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=41.60 E-value=4.2e+02 Score=28.89 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=50.7
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccC
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADL 404 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl 404 (592)
...+|+|+|.|.|.-.. .|+.+-++ .++|+|+. +...++...++. ..-++. | ...+.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~----S~~mL~~A~~k~----~~~~i~--~---i~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQ----SPHQLAKAKQKE----PLKECK--I---IEGDAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEEC----CHHHHHHHHHhh----hccCCe--E---EeccHHhC
Confidence 35689999999997333 33433222 58999984 334454444332 112333 2 12233332
Q ss_pred CcccccccCCCCceEEEEeccchhcccCCCChHHHHHHH-HHhcCCcEEEEE
Q 043131 405 DASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSV-VKNIKPDIFTVA 455 (592)
Q Consensus 405 ~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~-Ir~L~PkVvtlv 455 (592)
. +..+.-+.++.+. .||++.+ .+.+|+. .+-|+|.=.+++
T Consensus 173 p-----~~~~sFDvVIs~~--~L~~~~d----~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 P-----FPTDYADRYVSAG--SIEYWPD----PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred C-----CCCCceeEEEEcC--hhhhCCC----HHHHHHHHHHhcCCCcEEEE
Confidence 2 1111113555543 4566543 2345554 477899866554
No 62
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=41.59 E-value=3.6e+02 Score=26.58 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=17.2
Q ss_pred cChHHHHHHHHcCCCccccCC
Q 043131 522 ETLAQWRTRFSSAGFIPAHIG 542 (592)
Q Consensus 522 E~~~qWr~Rm~~AGF~pvpLs 542 (592)
-+...|...+..+||+.+...
T Consensus 184 ~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 184 IKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CCHHHHHHHHHHCCCeEeeee
Confidence 356789999999999988653
No 63
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=40.67 E-value=2.7e+02 Score=29.75 Aligned_cols=102 Identities=21% Similarity=0.169 Sum_probs=50.3
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCc
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDA 406 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~ 406 (592)
-+|+|+|.|.|. ++..++.+ |+- +++||++. ...+.+. +...+++. .....+|... .++++..
T Consensus 124 ~~VLDIGCG~G~----~~~~la~~--g~~--~V~GiD~S----~~~l~q~-~a~~~~~~-~~~~i~~~~~---d~e~lp~ 186 (322)
T PRK15068 124 RTVLDVGCGNGY----HMWRMLGA--GAK--LVVGIDPS----QLFLCQF-EAVRKLLG-NDQRAHLLPL---GIEQLPA 186 (322)
T ss_pred CEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCC----HHHHHHH-HHHHHhcC-CCCCeEEEeC---CHHHCCC
Confidence 379999999996 34455544 322 59999942 2222111 11112221 1223344432 3333321
Q ss_pred ccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEe
Q 043131 407 SMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAE 456 (592)
Q Consensus 407 ~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvE 456 (592)
++.=++++ |+..|||+. ++.+.+-..-+.|+|.-.++.|
T Consensus 187 ------~~~FD~V~--s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 ------LKAFDTVF--SMGVLYHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ------cCCcCEEE--ECChhhccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 11113443 444567753 3445455555788998776665
No 64
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=40.46 E-value=2.6e+02 Score=30.08 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=55.3
Q ss_pred HHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEee
Q 043131 316 AILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395 (592)
Q Consensus 316 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~ 395 (592)
+|++.+...+-=+|+|+|.|.|. ++..++.+ |+ -+++||++. ...+.+. +...+++... -...|..
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS----~~ml~q~-~~~~~~~~~~-~~v~~~~ 177 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPT----VLFLCQF-EAVRKLLDND-KRAILEP 177 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCC----HHHHHHH-HHHHHHhccC-CCeEEEE
Confidence 35554433333489999999997 44455543 33 278999853 2233221 1222222111 1222322
Q ss_pred eecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEe
Q 043131 396 FVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAE 456 (592)
Q Consensus 396 v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvE 456 (592)
..++++... . .=++++. +..|||+ +++.+.+-..-+.|+|.-.++++
T Consensus 178 ---~~ie~lp~~----~--~FD~V~s--~gvL~H~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 ---LGIEQLHEL----Y--AFDTVFS--MGVLYHR---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ---CCHHHCCCC----C--CcCEEEE--cchhhcc---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 233444321 0 1134443 3446765 34455555555779998666654
No 65
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=38.77 E-value=3.9e+02 Score=26.29 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=53.7
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcccCC
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLADLD 405 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sledl~ 405 (592)
-.|+|+|.|.|. .+++ ++.+ .|..++|||+. +.+.++.+. +.++..+++ ++|..- +.+++.
T Consensus 47 ~~VLDiGcGtG~--~al~--la~~---~~~~~V~giD~----s~~~l~~A~----~~~~~~~l~~i~~~~~---d~~~~~ 108 (187)
T PRK00107 47 ERVLDVGSGAGF--PGIP--LAIA---RPELKVTLVDS----LGKKIAFLR----EVAAELGLKNVTVVHG---RAEEFG 108 (187)
T ss_pred CeEEEEcCCCCH--HHHH--HHHH---CCCCeEEEEeC----cHHHHHHHH----HHHHHcCCCCEEEEec---cHhhCC
Confidence 468999999984 3332 2222 13469999984 334444433 334455664 555432 233332
Q ss_pred cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 043131 406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAE 456 (592)
Q Consensus 406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvE 456 (592)
. . . .-+.++.|+. ..++.+++.+ +.|+|.=.+++.
T Consensus 109 ~---~-~--~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 109 Q---E-E--KFDVVTSRAV----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred C---C-C--CccEEEEccc----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 1 1 2257776642 2346677764 789999887765
No 66
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=37.44 E-value=41 Score=35.34 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=20.5
Q ss_pred CCCCeeEEEecccCCCCchHHHHHHHhc
Q 043131 322 DGKRRVHVIDFSMNQGMQWPALMQALAL 349 (592)
Q Consensus 322 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~ 349 (592)
.|.+.+||||++-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 689999999998866677 445666655
No 67
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=37.42 E-value=1.9e+02 Score=28.46 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=55.5
Q ss_pred CeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCc-eeEEeeeecCCc-c
Q 043131 325 RRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHV-EFEYRGFVANSL-A 402 (592)
Q Consensus 325 ~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgV-pFeF~~v~~~sl-e 402 (592)
..-.|+|+|.|.|.-...|.+ +. |.-++|||+. +.+.++...+++. ..++ .++|.. .+. +
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~----s~~~i~~a~~~~~----~~~~~~v~~~~---~d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEV----HEPGVGKALKKIE----EEGLTNLRLLC---GDAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEe----chHHHHHHHHHHH----HcCCCCEEEEe---cCHHH
Confidence 445799999999985544433 31 3468999994 3445554444433 2333 244432 222 3
Q ss_pred cCCcccccccCCCCceEEEEeccchhcccC--CCChHHHHHHHH-HhcCCcEEEEE
Q 043131 403 DLDASMLEIKPSEVDSVAVNSVFELHKLLA--QPGAIDKVLSVV-KNIKPDIFTVA 455 (592)
Q Consensus 403 dl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~--~~~~~~~~L~~I-r~L~PkVvtlv 455 (592)
.+.. . +.++.-+.+++|.....+.... .....+.+|+.+ +-|+|.=++++
T Consensus 102 ~l~~-~--~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLD-M--FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHH-H--cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 2210 0 1111124666665433222111 011246677776 58899765554
No 68
>PRK06922 hypothetical protein; Provisional
Probab=35.14 E-value=2.2e+02 Score=33.94 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=57.5
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCc
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDA 406 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~ 406 (592)
-.|+|+|.|.|. +...|+.+. |..++|||+.. ...++...+++ ...+..++|.. . +..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS----~~MLe~Ararl----~~~g~~ie~I~--g-Da~dLp- 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS----ENVIDTLKKKK----QNEGRSWNVIK--G-DAINLS- 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC----HHHHHHHHHHh----hhcCCCeEEEE--c-chHhCc-
Confidence 479999999995 455666542 45799999953 44565554443 22344444422 2 222221
Q ss_pred ccccccCCCCceEEEEeccchhcccC---------CCChHHHHHHHH-HhcCCcEEEE-Eec
Q 043131 407 SMLEIKPSEVDSVAVNSVFELHKLLA---------QPGAIDKVLSVV-KNIKPDIFTV-AEQ 457 (592)
Q Consensus 407 ~~L~lr~~~~EaLaVN~~f~LH~Ll~---------~~~~~~~~L~~I-r~L~PkVvtl-vEq 457 (592)
.. +. ++.+=+|-+.+.+|++.. .......+|+.+ +.|+|.-.++ +|.
T Consensus 481 ~~--fe--deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 SS--FE--KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cc--cC--CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 01 12 123333445556787642 012345566554 7899975444 443
No 69
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=34.99 E-value=81 Score=29.86 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
+.|++.+.-...=+|+|+|.|.|. |...|+.| + -++|+|+. +.+.++.+.+++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~----~~~~~~~~~~~~ 55 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEI----DPRLAPRLREKF 55 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEEC----CHHHHHHHHHHh
Confidence 356666654444489999999987 66666666 3 38999984 344555444443
No 70
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=34.93 E-value=3.2e+02 Score=30.63 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=58.6
Q ss_pred CCCCeeEEEecccCCCC-chHHHHHHHh--------cCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeE
Q 043131 322 DGKRRVHVIDFSMNQGM-QWPALMQALA--------LRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFE 392 (592)
Q Consensus 322 ~g~~~VHIIDfgI~~G~-QWpsLiqaLA--------~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFe 392 (592)
+.-.+|-|||.|+||-- -=|..| +|+ .+...|+....-|.-.|+......++-+ .||.++|+..
T Consensus 99 ~rG~~v~iiDaDvGQ~ei~pPg~I-SL~~~~s~~~~L~~l~~~~~~FvG~isP~~~~~~~i~~v-~rL~~~a~~~----- 171 (398)
T COG1341 99 ARGRKVAIIDADVGQSEIGPPGFI-SLAFPESPVISLSELEPFTLYFVGSISPQGFPGRYIAGV-ARLVDLAKKE----- 171 (398)
T ss_pred hcCceEEEEeCCCCCcccCCCceE-EeecccCCCCCHHHcCccceEEEeccCCCCChHHHHHHH-HHHHHHhhcc-----
Confidence 33456999999998731 111111 111 1122455555555556654443444333 4566666533
Q ss_pred EeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEecCC
Q 043131 393 YRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQEA 459 (592)
Q Consensus 393 F~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvEqEa 459 (592)
-+.++||+.-..+- ...++.-...|...+|++++.+|.+-
T Consensus 172 -----------------------~~~ilIdT~GWi~G----~~g~elk~~li~~ikP~~Ii~l~~~~ 211 (398)
T COG1341 172 -----------------------ADFILIDTDGWIKG----WGGLELKRALIDAIKPDLIIALERAN 211 (398)
T ss_pred -----------------------CCEEEEcCCCceeC----chHHHHHHHHHhhcCCCEEEEecccc
Confidence 13556665433331 14567778889999999999997764
No 71
>PRK03646 dadX alanine racemase; Reviewed
Probab=34.92 E-value=78 Score=34.27 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=26.6
Q ss_pred CeeEE-EecccC-CCCc---hHHHHHHHhcCCCCCCeeEEeecCCC
Q 043131 325 RRVHV-IDFSMN-QGMQ---WPALMQALALRPGGPPAFRLTGIGPP 365 (592)
Q Consensus 325 ~~VHI-IDfgI~-~G~Q---WpsLiqaLA~RpgGPP~LRITgIg~p 365 (592)
-+||| ||-|++ .|+. +..+++.+.. .|.|+|+||..-
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH 158 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSH 158 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcC
Confidence 37899 999996 7875 5566666543 356999999643
No 72
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=34.91 E-value=3.8e+02 Score=29.45 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 043131 309 AHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIH 388 (592)
Q Consensus 309 AhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lg 388 (592)
|....-..|++.+.-..-=+|+|+|.|.|. +...|+.+.+ .++|||+. +...++...++. + +
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDl----S~~~l~~A~~~~----~--~ 212 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTI----SAEQQKLAQERC----A--G 212 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeC----CHHHHHHHHHHh----c--c
Confidence 334444556666653444489999998775 4455565543 48999984 344554444433 2 2
Q ss_pred ceeEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEE
Q 043131 389 VEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVA 455 (592)
Q Consensus 389 VpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlv 455 (592)
+.++|.. .+..++. +.-+.++.+ ..++++.. ...+.+++.+ +-|+|.=.+++
T Consensus 213 l~v~~~~---~D~~~l~--------~~fD~Ivs~--~~~ehvg~--~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 213 LPVEIRL---QDYRDLN--------GQFDRIVSV--GMFEHVGP--KNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred CeEEEEE---CchhhcC--------CCCCEEEEe--CchhhCCh--HHHHHHHHHHHHHcCCCcEEEE
Confidence 3333332 1222221 111344333 33455521 2345566655 66788876665
No 73
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=32.82 E-value=5.1e+02 Score=25.87 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=29.6
Q ss_pred HHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCC
Q 043131 313 ANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGP 364 (592)
Q Consensus 313 ANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~ 364 (592)
.-+.+++.+.....-+|+|+|.|.|. +.+.|+.+ + -++|||+.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~ 72 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDL 72 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEEC
Confidence 34556676665444579999999994 55666654 2 48999984
No 74
>PF08499 PDEase_I_N: 3'5'-cyclic nucleotide phosphodiesterase N-terminal; InterPro: IPR013706 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This domain is found to the N terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (IPR002073 from INTERPRO).; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
Probab=32.58 E-value=17 Score=30.06 Aligned_cols=27 Identities=30% Similarity=0.700 Sum_probs=23.4
Q ss_pred ccccccccccCccccCCCccchHHHHHhhc
Q 043131 72 QADGINHLATDTVHYDPSNLCTWLESMLTE 101 (592)
Q Consensus 72 ~~d~~s~lasdtvhynpsdls~w~~sml~e 101 (592)
.||-+|.+-+|+| |++...||.||++-
T Consensus 5 ~edel~~i~~dsv---p~eVr~WLasTFtr 31 (59)
T PF08499_consen 5 EEDELSEIQSDSV---PDEVRDWLASTFTR 31 (59)
T ss_pred hhhhHhhcccccC---CHHHHHHHHHHHHh
Confidence 3566999999999 88899999999984
No 75
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=32.50 E-value=4.2e+02 Score=26.70 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=57.1
Q ss_pred eeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe------eeecC
Q 043131 326 RVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR------GFVAN 399 (592)
Q Consensus 326 ~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~------~v~~~ 399 (592)
.-.|+|.|.|.|. -+..||.+ | ..+|||+. +...++. +++..++..+.. .....
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-G----~~V~avD~----s~~Ai~~-------~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-G----HEVLGVEL----SELAVEQ-------FFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-C----CeEEEEcc----CHHHHHH-------HHHHcCCCccccccccccccccC
Confidence 3478999999884 44456653 3 68999994 2333432 334455543210 00001
Q ss_pred CcccCCcccccccCCC-CceEEEEeccchhcccCCCChHHHHHHHHHh-cCCc--EEEEEe--cCCCCCCCch
Q 043131 400 SLADLDASMLEIKPSE-VDSVAVNSVFELHKLLAQPGAIDKVLSVVKN-IKPD--IFTVAE--QEANHNGPVF 466 (592)
Q Consensus 400 sledl~~~~L~lr~~~-~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~-L~Pk--VvtlvE--qEanhNsp~F 466 (592)
++.-...+.+.+.+.+ +..=.|.-.-.+|+|. +..+..++..|.+ |+|. +++++. .+...++|.|
T Consensus 98 ~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~--~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 98 EITIYCGDFFALTAADLADVDAVYDRAALIALP--EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred ceEEEECcccCCCcccCCCeeEEEehHhHhhCC--HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 1111111112221110 1122233223456663 4567888888755 8999 555443 2333455543
No 76
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.34 E-value=91 Score=31.33 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=37.1
Q ss_pred HhhhCCCCeeEEEecccCCC---CchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHH
Q 043131 318 LEAFDGKRRVHVIDFSMNQG---MQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLA 384 (592)
Q Consensus 318 LEA~~g~~~VHIIDfgI~~G---~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA 384 (592)
|-+++-.+.=|++|+|-+.| .+|. + + .|..|+++|+ .+.+.++.+.+++.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~----~-----~p~~~v~AIe----~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-L----A-----GPSGRVIAIE----RDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-H----h-----CCCceEEEEe----cCHHHHHHHHHHHHHhC
Confidence 34455455559999999988 4665 2 1 3778999999 45677877877766554
No 77
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=30.98 E-value=63 Score=34.13 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEee
Q 043131 353 GPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395 (592)
Q Consensus 353 GPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~ 395 (592)
|+|..|||..++.-......|+++...+.+-++.+|..++|+-
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 7888888888754222346799999999999999999999975
No 78
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=30.84 E-value=78 Score=32.75 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=34.5
Q ss_pred hCChhHHHH-HHHHHHH----HhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCC
Q 043131 302 TCPYLKFAH-FTANQAI----LEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGP 364 (592)
Q Consensus 302 ~~P~lkFAh-ftANQAI----LEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~ 364 (592)
..|=-++++ |..|+.| ++.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~ 72 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEI 72 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEEC
Confidence 344444444 4444444 444444455689999999986 66777766 22 8999984
No 79
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=29.44 E-value=23 Score=24.64 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=8.3
Q ss_pred ccccCCCccc
Q 043131 83 TVHYDPSNLC 92 (592)
Q Consensus 83 tvhynpsdls 92 (592)
.||-||||-|
T Consensus 7 i~h~~psdks 16 (28)
T PRK14751 7 VMHKNPSDKS 16 (28)
T ss_pred eeecCCCcCc
Confidence 5899999965
No 80
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=28.96 E-value=1.1e+02 Score=26.79 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=48.9
Q ss_pred HHHHHHHHcCceeEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEecC
Q 043131 379 KLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAEQE 458 (592)
Q Consensus 379 rL~~fA~~lgVpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvEqE 458 (592)
.|+.+.+..|...++-.... +.+++.......+| +.|++++.+.-+. .....+.+.+|+.+|++.|++
T Consensus 19 ~la~~l~~~G~~v~~~d~~~-~~~~l~~~~~~~~p---d~V~iS~~~~~~~-----~~~~~l~~~~k~~~p~~~iv~--- 86 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANV-PPEELVEALRAERP---DVVGISVSMTPNL-----PEAKRLARAIKERNPNIPIVV--- 86 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB--HHHHHHHHHHTTC---SEEEEEESSSTHH-----HHHHHHHHHHHTTCTTSEEEE---
T ss_pred HHHHHHHHCCCeEEEECCCC-CHHHHHHHHhcCCC---cEEEEEccCcCcH-----HHHHHHHHHHHhcCCCCEEEE---
Confidence 56677778888887765322 22333332233344 5899987432221 124678888999999988886
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 043131 459 ANHNGPVFLDRFTESLHYY 477 (592)
Q Consensus 459 anhNsp~Fl~RF~EAL~yY 477 (592)
.++.+.....+.|++|
T Consensus 87 ---GG~~~t~~~~~~l~~~ 102 (121)
T PF02310_consen 87 ---GGPHATADPEEILREY 102 (121)
T ss_dssp ---EESSSGHHHHHHHHHH
T ss_pred ---ECCchhcChHHHhccC
Confidence 3343344444555554
No 81
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=28.41 E-value=1.2e+02 Score=30.60 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=35.5
Q ss_pred CeeEE-Eecc--cC-CCCchH---HHHHHHhcCCCCCCeeEEeecCCC--CCCChHHHHHHHHHHHHHHHHcC
Q 043131 325 RRVHV-IDFS--MN-QGMQWP---ALMQALALRPGGPPAFRLTGIGPP--AADNTDQLQQVGWKLAQLAESIH 388 (592)
Q Consensus 325 ~~VHI-IDfg--I~-~G~QWp---sLiqaLA~RpgGPP~LRITgIg~p--~~~~~~~L~etG~rL~~fA~~lg 388 (592)
-.||| ||-| ++ .|+.+. .+++.+ ..-|.|++.||-.- ..++.+..++.-..+.++.+.++
T Consensus 121 ~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i----~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (229)
T TIGR00044 121 LNVLLQINISDEESKSGIQPEELLELAIQI----EELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIK 189 (229)
T ss_pred ceEEEEEECCCCCCCCCCCHHHHHHHHHHH----hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 37888 8984 54 788653 444444 33577999999532 22334445555556666665543
No 82
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=27.86 E-value=3.6e+02 Score=28.23 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=60.3
Q ss_pred HHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEe
Q 043131 315 QAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYR 394 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~ 394 (592)
.-|+|.+.=+.-=||+|+|.| |=.++..+|.|-| .++|||.. +....+. ..+.++..|++-...
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitl----S~~Q~~~----a~~~~~~~gl~~~v~ 115 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITL----SEEQAEY----ARERIREAGLEDRVE 115 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-----HHHHHH----HHHHHHCSTSSSTEE
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEEC----CHHHHHH----HHHHHHhcCCCCceE
Confidence 456677654455589999876 5668889998875 58999983 3333333 334455667652222
Q ss_pred eeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEEe
Q 043131 395 GFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVAE 456 (592)
Q Consensus 395 ~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlvE 456 (592)
. ....+.++.. .-+ -++.| -.+-|+- ....+.|++.| +-|+|.=.+++.
T Consensus 116 v-~~~D~~~~~~-----~fD--~IvSi---~~~Ehvg--~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 116 V-RLQDYRDLPG-----KFD--RIVSI---EMFEHVG--RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp E-EES-GGG--------S-S--EEEEE---SEGGGTC--GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred E-EEeeccccCC-----CCC--EEEEE---echhhcC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1223444433 111 22333 2344442 23567888888 667999877763
No 83
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=27.80 E-value=61 Score=33.94 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=16.2
Q ss_pred CCCCeeEEEecccCCCCchHHHHHHHhc
Q 043131 322 DGKRRVHVIDFSMNQGMQWPALMQALAL 349 (592)
Q Consensus 322 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~ 349 (592)
.|.+.+||||+ +.+ ++ .+|..++.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~ 73 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALH 73 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHH
Confidence 58999999999 444 55 34444443
No 84
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=27.67 E-value=2.1e+02 Score=27.30 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=60.7
Q ss_pred HHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-e
Q 043131 313 ANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-F 391 (592)
Q Consensus 313 ANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-F 391 (592)
+-..+++.+...+.=+|+|+|.|.|. +=-.|+.+ -|..++|+++ .+...++-+.++ ++..+++ .
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~---~~~~~v~~vD----i~~~a~~~a~~n----~~~n~~~~v 83 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR---GPDAKVTAVD----INPDALELAKRN----AERNGLENV 83 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT---STCEEEEEEE----SBHHHHHHHHHH----HHHTTCTTE
T ss_pred HHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHh---CCCCEEEEEc----CCHHHHHHHHHH----HHhcCcccc
Confidence 33466666665566679999999995 32234433 3568899998 455566554444 3445555 3
Q ss_pred EEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCC-ChHHHHHH-HHHhcCCcEEEE
Q 043131 392 EYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQP-GAIDKVLS-VVKNIKPDIFTV 454 (592)
Q Consensus 392 eF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~-~~~~~~L~-~Ir~L~PkVvtl 454 (592)
++. ..+-++.+.. +.-+.++.|=. +|.-.++. ...+.|+. .-+-|+|.=..+
T Consensus 84 ~~~--~~d~~~~~~~-------~~fD~Iv~NPP--~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 84 EVV--QSDLFEALPD-------GKFDLIVSNPP--FHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp EEE--ESSTTTTCCT-------TCEEEEEE-----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccc--cccccccccc-------cceeEEEEccc--hhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 333 3333333321 12257777754 23211100 12344444 446778876553
No 85
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=27.10 E-value=4.5e+02 Score=26.69 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=49.3
Q ss_pred eEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeeeecCCcccCC
Q 043131 327 VHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGFVANSLADLD 405 (592)
Q Consensus 327 VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v~~~sledl~ 405 (592)
=+|+|+|.|.|.-...+.+.. | +.-+||||+. +...++...++ ++..+++ .+|.. .+++++.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~-----g-~~~~v~gvD~----s~~~l~~A~~~----~~~~g~~~v~~~~---~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRV-----G-PTGKVIGVDM----TPEMLAKARAN----ARKAGYTNVEFRL---GEIEALP 141 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHh-----C-CCCEEEEECC----CHHHHHHHHHH----HHHcCCCCEEEEE---cchhhCC
Confidence 389999999885222122111 1 3458999984 23444443333 2334442 33322 2333332
Q ss_pred cccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEE
Q 043131 406 ASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVA 455 (592)
Q Consensus 406 ~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlv 455 (592)
+..+.-+.++.|+++ |+.. +....+=...|-|+|.=.+++
T Consensus 142 -----~~~~~fD~Vi~~~v~--~~~~---d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 -----VADNSVDVIISNCVI--NLSP---DKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred -----CCCCceeEEEEcCcc--cCCC---CHHHHHHHHHHHcCCCcEEEE
Confidence 111111456667654 4432 223333345577888855543
No 86
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=26.09 E-value=38 Score=37.34 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=11.2
Q ss_pred CCCeeEEEecccC
Q 043131 323 GKRRVHVIDFSMN 335 (592)
Q Consensus 323 g~~~VHIIDfgI~ 335 (592)
.+..||||||||.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 4679999999985
No 87
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=25.81 E-value=55 Score=32.82 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=49.1
Q ss_pred CCcccccc--cCCCCchhhhhhhCCcccCCcHHHHHHHHHHHHHHhcccccccccccccCc---cccCCCccchHHHHHh
Q 043131 25 GKMWEEEQ--TDGGGMDELLAVLGYNVRSSDMVEVAQKIEQLEEAMGAFQADGINHLATDT---VHYDPSNLCTWLESML 99 (592)
Q Consensus 25 ~~~~~~~~--~~~~~~d~~la~~gy~v~~~~m~~vaqkle~le~~m~~~~~d~~s~lasdt---vhynpsdls~w~~sml 99 (592)
+..|++.. +-=|-+||+-+-.|+--..++-.++..-|++...-+=....| ||++- .-+...|+ .|||.++
T Consensus 23 ~rV~Kd~~rVeayGtlDElNs~IG~A~~~~~~~~i~~~L~~IQ~~LF~lG~d----Lat~~~~~~~i~~e~v-~~LE~~i 97 (184)
T COG2096 23 GRVSKDSPRVEAYGTLDELNSFIGLARALLKDEDIRAILRRIQNDLFDLGAD----LATPEEKPLRITEEDV-KRLEKRI 97 (184)
T ss_pred ceecCCCceeeeeccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhh----hcCCCccccccCHHHH-HHHHHHH
Confidence 35565544 335679999999999776555467777777766654222122 45554 22333443 6999999
Q ss_pred hccCCCC
Q 043131 100 TEFNPTM 106 (592)
Q Consensus 100 ~e~~~~~ 106 (592)
.++|..+
T Consensus 98 d~y~~~l 104 (184)
T COG2096 98 DAYNAEL 104 (184)
T ss_pred HHHHhcC
Confidence 9999754
No 88
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=25.45 E-value=1.2e+02 Score=32.64 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 314 NQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 314 NQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
-+.+||-+.....-+|+|||.|+|. |==.||.+ .|..+||-++ .+...++-..+.|
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gv----lg~~la~~---~p~~~vtmvD----vn~~Av~~ar~Nl 202 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGV----LGLVLAKK---SPQAKLTLVD----VNARAVESARKNL 202 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccH----HHHHHHHh---CCCCeEEEEe----cCHHHHHHHHHhH
Confidence 4567777776665699999999997 32234433 3578999998 4556665555554
No 89
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.60 E-value=83 Score=30.32 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=32.9
Q ss_pred CeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEee
Q 043131 355 PAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395 (592)
Q Consensus 355 P~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~ 395 (592)
|-|-+.|...|.......|+++-+++.+.|+.+|+.++|..
T Consensus 8 PNLNlLG~REp~iYG~~tl~di~~~~~~~a~~~g~~v~~~Q 48 (141)
T TIGR01088 8 PNLNMLGLREPGVYGSQTLEEIVEIIETFAAQLNVELEFFQ 48 (141)
T ss_pred CCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 45566677666654556799999999999999999999986
No 90
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=24.40 E-value=3.2e+02 Score=27.15 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=41.4
Q ss_pred CeeEE-Eeccc---CCCCch---HHHHHHHhcCCCCCCeeEEeecCCC--CCCChHHHHHHHHHHHHHHHHc----Ccee
Q 043131 325 RRVHV-IDFSM---NQGMQW---PALMQALALRPGGPPAFRLTGIGPP--AADNTDQLQQVGWKLAQLAESI----HVEF 391 (592)
Q Consensus 325 ~~VHI-IDfgI---~~G~QW---psLiqaLA~RpgGPP~LRITgIg~p--~~~~~~~L~etG~rL~~fA~~l----gVpF 391 (592)
-.||| ||-|+ ..|+.+ +.+++.+.. -|.|+|.||..- +.++.+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 37898 89885 478865 445555533 355888888532 2233445666667777777766 4666
Q ss_pred EEee
Q 043131 392 EYRG 395 (592)
Q Consensus 392 eF~~ 395 (592)
++-.
T Consensus 193 ~~is 196 (222)
T cd00635 193 KELS 196 (222)
T ss_pred CEEE
Confidence 6544
No 91
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=23.86 E-value=1.3e+02 Score=29.40 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HHHhhCCHHHHHHHHHHhhccccCCCCchhhHHHHHHHHHHHHHhc
Q 043131 226 LVHALMACA-EAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYG 280 (592)
Q Consensus 226 Lv~LLlaCA-eAV~~gd~~~A~~lL~~L~~las~~g~~~qRvA~yFaeAL~~Rl~~ 280 (592)
+..+|+-|. ..+..++...|..++..+..+..+..+...|+...|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 556666555 6788899999999999999888666678899999999999765444
No 92
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=23.50 E-value=2.4e+02 Score=33.32 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=53.3
Q ss_pred cccCCC-CchHHHHHHHhc---CCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcc
Q 043131 332 FSMNQG-MQWPALMQALAL---RPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDAS 407 (592)
Q Consensus 332 fgI~~G-~QWpsLiqaLA~---RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~ 407 (592)
+|+..| -||-+|.++|.. +.++.|.+-|+..... ..+. |-+-|.++|+.-|++-+|.. .+++|...
T Consensus 353 ~g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~---eED~---T~~YL~d~a~qAG~~t~~~~----~iedL~~d 422 (619)
T PRK10507 353 GYKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDI---EENY---HAQFMQQALHQAGFETKILR----GLDELRWD 422 (619)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCC---CcHH---HHHHHHHHHHHCCCceEEec----CHHHeEEC
Confidence 345554 688888877754 2343478889987632 1122 55679999999999988872 12344322
Q ss_pred ccc-ccCCCCceEEEEeccchhc
Q 043131 408 MLE-IKPSEVDSVAVNSVFELHK 429 (592)
Q Consensus 408 ~L~-lr~~~~EaLaVN~~f~LH~ 429 (592)
.-+ +. +.+-..|.++|.|+.
T Consensus 423 ~~G~~~--D~dg~~I~~vfKlyP 443 (619)
T PRK10507 423 AAGQLI--DGDGRLVNCVWKTWA 443 (619)
T ss_pred CCCcEE--CCCCCEeeeeeeccc
Confidence 101 22 345677899988874
No 93
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=23.29 E-value=48 Score=27.91 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.5
Q ss_pred cChHHHHHHHHcCCCccccCC
Q 043131 522 ETLAQWRTRFSSAGFIPAHIG 542 (592)
Q Consensus 522 E~~~qWr~Rm~~AGF~pvpLs 542 (592)
|+..+-|.+|..+|++||.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 345677999999999999885
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=22.86 E-value=4.8e+02 Score=25.35 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred CCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCc--eeEEeeeecCCc
Q 043131 324 KRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHV--EFEYRGFVANSL 401 (592)
Q Consensus 324 ~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgV--pFeF~~v~~~sl 401 (592)
...-+|+|+|.|.|. +...|+.+ + .++|||+. +...++...+++. ..++ ...|.. . ++
T Consensus 62 ~~~~~vLDvGcG~G~----~~~~l~~~--~---~~v~~~D~----s~~~i~~a~~~~~----~~~~~~~i~~~~--~-d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGS----LSIPLARR--G---AKVVASDI----SPQMVEEARERAP----EAGLAGNITFEV--G-DL 121 (230)
T ss_pred CCCCEEEEEeCCCCH----HHHHHHHc--C---CEEEEEEC----CHHHHHHHHHHHH----hcCCccCcEEEE--c-Cc
Confidence 345589999999996 33344443 2 35999984 3445555544432 2333 334442 1 12
Q ss_pred ccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEE
Q 043131 402 ADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTV 454 (592)
Q Consensus 402 edl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtl 454 (592)
+... +.-+.++.+ ..+|++.+ .....+++.+.++.+..+++
T Consensus 122 ~~~~--------~~fD~v~~~--~~l~~~~~--~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 122 ESLL--------GRFDTVVCL--DVLIHYPQ--EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhcc--------CCcCEEEEc--chhhcCCH--HHHHHHHHHHHhhcCCeEEE
Confidence 2211 111344433 33555432 24567777776654444444
No 95
>PF14044 NETI: NETI protein
Probab=22.66 E-value=67 Score=26.41 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=20.8
Q ss_pred cccccChHHHHHHHHcCCCcccc
Q 043131 518 VERHETLAQWRTRFSSAGFIPAH 540 (592)
Q Consensus 518 vERhE~~~qWr~Rm~~AGF~pvp 540 (592)
|+-+|+..+--.||...||.||.
T Consensus 4 V~enETI~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 4 VEENETISDCLARMKKEGYMPVR 26 (57)
T ss_pred ccCCCcHHHHHHHHHHcCCCcee
Confidence 56789999999999999999984
No 96
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=22.56 E-value=92 Score=30.16 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=31.7
Q ss_pred CeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEee
Q 043131 355 PAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRG 395 (592)
Q Consensus 355 P~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~ 395 (592)
|-|=+.|...|.......|+++-+.|.+.|+.+|+.++|..
T Consensus 10 PNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~Q 50 (146)
T PRK05395 10 PNLNLLGTREPEIYGSTTLADIEALLEEEAAELGVELEFFQ 50 (146)
T ss_pred CCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 44555566555544456799999999999999999999986
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=22.17 E-value=7.8e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=33.8
Q ss_pred eeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce--eEEe
Q 043131 326 RVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE--FEYR 394 (592)
Q Consensus 326 ~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp--FeF~ 394 (592)
..+|+|+|.|.|. +.-+|+.+. |..++|||+. +...++.+.++ ++..|+. .+|.
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDi----s~~al~~A~~n----~~~~~~~~~i~~~ 177 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDI----SPDALAVAEIN----IERHGLEDRVTLI 177 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEEC----CHHHHHHHHHH----HHHcCCCCcEEEE
Confidence 4589999999996 445555442 3469999983 45566555444 3444553 4443
No 98
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.98 E-value=94 Score=29.90 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=41.2
Q ss_pred CeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcccccccCCCCceEEEEec
Q 043131 355 PAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDASMLEIKPSEVDSVAVNSV 424 (592)
Q Consensus 355 P~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~ 424 (592)
|-|=+-|...|.......|+++-++|.+.|+.+|+.++|.. .+.-.++-.+.-.-+ ++.+.+++|--
T Consensus 8 PNLN~LG~Rep~iYG~~tl~~i~~~l~~~a~~~g~~v~~~Q--SN~Egelid~I~~a~-~~~dgiIINpg 74 (140)
T cd00466 8 PNLNLLGKREPEIYGTTTLADIEALLRELAAELGVEVEFFQ--SNHEGELIDWIHEAR-DGADGIIINPG 74 (140)
T ss_pred CCccccCCCCCCcCCcCCHHHHHHHHHHHHHHcCCEEEEEe--eCcHHHHHHHHHHhh-ccCcEEEEcch
Confidence 34445555555544456799999999999999999999986 332222211111111 12478888853
No 99
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=21.75 E-value=2.4e+02 Score=27.56 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=27.1
Q ss_pred CCCCeeEE-EecccC-CCCchH---HHHHHHhcCCCCCCeeEEeecC
Q 043131 322 DGKRRVHV-IDFSMN-QGMQWP---ALMQALALRPGGPPAFRLTGIG 363 (592)
Q Consensus 322 ~g~~~VHI-IDfgI~-~G~QWp---sLiqaLA~RpgGPP~LRITgIg 363 (592)
...-.||| ||-|+. .|+.+. .|++.+... |.|+|.||.
T Consensus 108 ~~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~----~~l~l~Gl~ 150 (218)
T PF01168_consen 108 GKPLKVHLKVDTGMGRLGVRPEELEELAEAIKAL----PNLRLEGLM 150 (218)
T ss_dssp TSTEEEEEEBESSSSSSSBECHHHHHHHHHHHHT----TTEEEEEEE
T ss_pred CCceEEEEeecccccccCCCHHHHHHHHHHHhcC----CCceEeeEe
Confidence 34558999 999986 777664 555666553 559999995
No 100
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=21.18 E-value=2.9e+02 Score=29.48 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 043131 309 AHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIH 388 (592)
Q Consensus 309 AhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lg 388 (592)
|.+..=..|++-+.=+.--||.|||.| |=+|+.-.|.+-| .++|||.. +...+....+| ++..|
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTl----S~~Q~~~~~~r----~~~~g 119 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTL----SEEQLAYAEKR----IAARG 119 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeC----CHHHHHHHHHH----HHHcC
Confidence 455555667777766777799998754 7789999998876 69999984 33444444333 34455
Q ss_pred ce--eEEeeeecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHh-cCCcEEEE
Q 043131 389 VE--FEYRGFVANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKN-IKPDIFTV 454 (592)
Q Consensus 389 Vp--FeF~~v~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~-L~PkVvtl 454 (592)
++ .++. ...+.++... + =.|-++-.++|+-. ...+.|++.+++ |+|+-..+
T Consensus 120 l~~~v~v~---l~d~rd~~e~-f---------DrIvSvgmfEhvg~--~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 120 LEDNVEVR---LQDYRDFEEP-F---------DRIVSVGMFEHVGK--ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred CCcccEEE---eccccccccc-c---------ceeeehhhHHHhCc--ccHHHHHHHHHhhcCCCceEE
Confidence 55 2222 2345555432 1 12334444566532 346889988855 56664443
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=20.94 E-value=2.5e+02 Score=27.19 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHH
Q 043131 309 AHFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLA 381 (592)
Q Consensus 309 AhftANQAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~ 381 (592)
..-...+.|++.+.-...=.|+|+|.|.|. +. ..++.+. |.-++|+|+. +.+.++...+++.
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~---~~la~~~---~~~~V~~vD~----s~~~~~~a~~n~~ 85 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGT-IP---VEAGLLC---PKGRVIAIER----DEEVVNLIRRNCD 85 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HH---HHHHHHC---CCCEEEEEeC----CHHHHHHHHHHHH
Confidence 334445556677654444469999999997 22 2233221 2258999994 3455555555543
No 102
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=20.89 E-value=7.3e+02 Score=24.12 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=50.6
Q ss_pred EEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeecCCcccCCcc
Q 043131 328 HVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLADLDAS 407 (592)
Q Consensus 328 HIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~~sledl~~~ 407 (592)
+|+|+|.+.|. +...|+.+- |..++|||+. +.+.++...+++ +..|+......+.. +..+..
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~----s~~~~~~a~~~~----~~~gl~~~i~~~~~-d~~~~~-- 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTI----SPEQAEVGRERI----RALGLQGRIRIFYR-DSAKDP-- 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEEC----CHHHHHHHHHHH----HhcCCCcceEEEec-ccccCC--
Confidence 68999999886 344555443 2368999984 334444444443 33344332222211 111110
Q ss_pred cccccCCCCceEEEEeccchhcccCCCChHHHHHHHH-HhcCCcEEEEE
Q 043131 408 MLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVV-KNIKPDIFTVA 455 (592)
Q Consensus 408 ~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~I-r~L~PkVvtlv 455 (592)
+ ++.-+.++ +...+|++.+ ...+|+.+ +-|+|.=.+++
T Consensus 64 -~---~~~fD~I~--~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 64 -F---PDTYDLVF--GFEVIHHIKD----KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred -C---CCCCCEee--hHHHHHhCCC----HHHHHHHHHHHcCCCCEEEE
Confidence 1 11112333 3444666632 45677766 56899866654
No 103
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=20.75 E-value=8.7e+02 Score=26.95 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=59.4
Q ss_pred HhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCce-eEEeee
Q 043131 318 LEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVE-FEYRGF 396 (592)
Q Consensus 318 LEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVp-FeF~~v 396 (592)
++.+.....-+|+|+|.|.|. +--.||.+- -+++||+ .+.+.++...+++ +..|+. .+|..-
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD----~s~~al~~A~~n~----~~~~~~~v~~~~~ 352 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVE----GVEAMVERARENA----RRNGLDNVTFYHA 352 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEe----CCHHHHHHHHHHH----HHcCCCceEEEEe
Confidence 344443344589999999996 333456542 3899998 3455666554443 334442 444431
Q ss_pred ecCCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCcEEEEEe
Q 043131 397 VANSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPDIFTVAE 456 (592)
Q Consensus 397 ~~~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~PkVvtlvE 456 (592)
++++.-. .+....+.-+++++|=. +.+ .+.++..|.+++|+-++.+.
T Consensus 353 ---d~~~~l~-~~~~~~~~fD~Vi~dPP--------r~g-~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 353 ---NLEEDFT-DQPWALGGFDKVLLDPP--------RAG-AAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred ---ChHHhhh-hhhhhcCCCCEEEECcC--------CcC-hHHHHHHHHhcCCCeEEEEE
Confidence 2222111 01011111256666532 112 45677999999999998874
No 104
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=20.53 E-value=2.5e+02 Score=30.05 Aligned_cols=103 Identities=21% Similarity=0.283 Sum_probs=53.5
Q ss_pred hhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHHHHHHHHcCceeEEeeeec
Q 043131 319 EAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVA 398 (592)
Q Consensus 319 EA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL~~fA~~lgVpFeF~~v~~ 398 (592)
+-+.|.+ |+|+|.|-|. |=+-|| |.| --+|||+. ..+.++...+. ...==.+.-+.+|+-
T Consensus 86 k~~~g~~---ilDvGCGgGL----LSepLA-rlg----a~V~GID~----s~~~V~vA~~h-~~~dP~~~~~~~y~l--- 145 (282)
T KOG1270|consen 86 KPLLGMK---ILDVGCGGGL----LSEPLA-RLG----AQVTGIDA----SDDMVEVANEH-KKMDPVLEGAIAYRL--- 145 (282)
T ss_pred cccCCce---EEEeccCccc----cchhhH-hhC----CeeEeecc----cHHHHHHHHHh-hhcCchhccccceee---
Confidence 3344555 9999999997 555565 333 57999984 33444333322 110000111112221
Q ss_pred CCcccCCcccccccCCCCceEEEEeccchhcccCCCChHHHHHHHHHhcCCc
Q 043131 399 NSLADLDASMLEIKPSEVDSVAVNSVFELHKLLAQPGAIDKVLSVVKNIKPD 450 (592)
Q Consensus 399 ~sledl~~~~L~lr~~~~EaLaVN~~f~LH~Ll~~~~~~~~~L~~Ir~L~Pk 450 (592)
..++.+.+.+ .+..=||-|+-.|+|.-+ +.+..-..++.|+|.
T Consensus 146 -~~~~~~~E~~-----~~~fDaVvcsevleHV~d---p~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 146 -EYEDTDVEGL-----TGKFDAVVCSEVLEHVKD---PQEFLNCLSALLKPN 188 (282)
T ss_pred -ehhhcchhhc-----ccccceeeeHHHHHHHhC---HHHHHHHHHHHhCCC
Confidence 1222222222 223557778888998743 344444567888996
No 105
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.36 E-value=73 Score=34.63 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=19.7
Q ss_pred HHHHhhhCCCCeeEEEecccC--CCCchHHH
Q 043131 315 QAILEAFDGKRRVHVIDFSMN--QGMQWPAL 343 (592)
Q Consensus 315 QAILEA~~g~~~VHIIDfgI~--~G~QWpsL 343 (592)
+.+++. |.+||=|||||+- .|.|+.--
T Consensus 146 ~~l~~~--~~~RVaIiD~DvHHGnGTqeify 174 (340)
T COG0123 146 KYLLKK--GVKRVAIIDFDVHHGNGTQEIFY 174 (340)
T ss_pred HHHHHc--CCCcEEEEEecCCCChhhHHHHc
Confidence 444444 8999999999995 55777543
No 106
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=20.20 E-value=2.4e+02 Score=27.06 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=30.0
Q ss_pred HHhhhCCCCeeEEEecccCCCCchHHHHHHHhcCCCCCCeeEEeecCCCCCCChHHHHHHHHHH
Q 043131 317 ILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKL 380 (592)
Q Consensus 317 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~RpgGPP~LRITgIg~p~~~~~~~L~etG~rL 380 (592)
+++.+.-...-.|+|+|.|.|. +.-.++.+ + |..++|+|+. +...++...+++
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~----~~~~la~~--~-~~~~v~~vD~----s~~~~~~a~~n~ 75 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGS----VSIEAALQ--F-PSLQVTAIER----NPDALRLIKENR 75 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCH----HHHHHHHH--C-CCCEEEEEEC----CHHHHHHHHHHH
Confidence 3344432333469999999985 33334433 2 4579999994 334454443333
Done!