BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043133
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
 pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
           Methanocaldococcus Jannaschii
          Length = 219

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 2   CKSILKDITERRSLSISINQFRNYCKNLDAHC-SCSYDFPQGQEILTLEKQCHA 54
           CK  L + +E+R L   I    N CKNL      C+ +    + +  L   C A
Sbjct: 83  CKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTSKAVAALSPDCIA 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,077,222
Number of Sequences: 62578
Number of extensions: 91703
Number of successful extensions: 256
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 3
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)