BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043133
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana
GN=SPO11-1 PE=1 SV=1
Length = 362
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 95/125 (76%)
Query: 1 FCKSILKDITERRSLSISINQFRNYCKNLDAHCSCSYDFPQGQEILTLEKQCHARRIDIL 60
F +S++ D+ E RS ISINQFRNYC N +A C CS D P+GQEI TL+K+ RID+L
Sbjct: 20 FTQSVVVDLAEGRSPKISINQFRNYCMNPEADCLCSSDKPKGQEIFTLKKEPQTYRIDML 79
Query: 61 LSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHNINVVGTS 120
L VLLIVQ+LLQEN H SKRDIYYMHPS + QSIVD+AI DICIL QCSR+N+NVV
Sbjct: 80 LRVLLIVQQLLQENRHASKRDIYYMHPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVG 139
Query: 121 LELLI 125
L++
Sbjct: 140 NGLVM 144
>sp|Q9Y5K1|SPO11_HUMAN Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2
SV=1
Length = 396
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%)
Query: 54 ARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHN 113
A++ ++L +L ++ KL+Q N + +KRDIYY L+ Q++VD INDI +L+ SR +
Sbjct: 108 AQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRS 167
Query: 114 INVVGTSLELL 124
++++ TS L+
Sbjct: 168 LHILSTSKGLI 178
>sp|Q9WTK8|SPO11_MOUSE Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2
SV=2
Length = 396
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 55 RRIDILLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHNI 114
++ ++L VL ++ KL+Q + + +KRDIYY L+ Q+ VD AI+DI +L+ R ++
Sbjct: 109 KKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAIDDISCMLKVPRRSL 168
Query: 115 NVVGTSLELL 124
+V+ TS L+
Sbjct: 169 HVLSTSKGLI 178
>sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1
SV=1
Length = 427
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 55 RRIDILLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHNI 114
R+ I +L ++ +L NIH++KRD++Y L+ +Q+ D ++D+ +L C+R ++
Sbjct: 141 RKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCMLGCTRSSL 200
Query: 115 NVVG 118
NV+
Sbjct: 201 NVIA 204
>sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Caenorhabditis elegans
GN=spo-11 PE=3 SV=1
Length = 425
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 56 RIDILLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHNIN 115
++D L L V LL+ + +KR++YY H ++Y Q +D +I IC LL SR N+N
Sbjct: 91 KLDRDLHCLHQVYDLLENDKRSTKRELYYEHKAVYGNQKYLDSSIKSICELLNESRANLN 150
Query: 116 VV 117
++
Sbjct: 151 IL 152
>sp|P40384|REC12_SCHPO Meiotic recombination protein rec12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec12 PE=1 SV=2
Length = 345
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 60 LLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHNINVVGT 119
L VL V + + + ++KRDIYY L+ Q++VD+ + DI + CSR ++NV +
Sbjct: 74 LFRVLDCVHEAVISDTVITKRDIYYRDVDLFKRQTVVDELLGDISNTIGCSRSDLNVEAS 133
Query: 120 SLELLI 125
+ L+
Sbjct: 134 AKGLVF 139
>sp|C4VB43|SPO11_NOSCE Probable meiosis-specific protein SPO11 homolog OS=Nosema ceranae
(strain BRL01) GN=SPO11 PE=3 SV=1
Length = 271
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 66 IVQKL-LQENIHMS--------KRDIYYMHPSLYSEQSIVDQAINDICILLQCSRHNINV 116
I+Q+L E IH+ KR+IYY S++ +QSIVD I D C L+C++ ++ +
Sbjct: 26 IIQRLKFYEQIHLGLTLNKIKNKREIYYNSVSIFKKQSIVDMLIKDTCNKLKCTQSDL-L 84
Query: 117 VGTSLE 122
+ T+L+
Sbjct: 85 ISTTLK 90
>sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana
GN=SPO11-2 PE=1 SV=1
Length = 383
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 68 QKLLQENIHMSKRDIYYM----HPSLYSEQSIVDQAINDICILLQCSRHNINVVGTSLEL 123
Q LLQE +++R+++Y P +S Q V++++ D+ LL+CSR+++ ++ +S L
Sbjct: 109 QILLQEK-RVTQRELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGL 167
Query: 124 L 124
+
Sbjct: 168 V 168
>sp|Q8SVS9|SPO11_ENCCU Probable meiosis-specific protein SPO11 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=SPO11 PE=3 SV=1
Length = 303
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 45 ILTLEKQCHARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVDQAINDIC 104
+L L + +R + L + I+ ++ + I ++R+I+YM +++ QS+V + ++ I
Sbjct: 18 MLKLLMRLKSRTLATRLRLYEIIIEMQELGITRNEREIFYMDVNVFRTQSVVRRLVSSIA 77
Query: 105 ILLQCSRHNINVVGT 119
LQ S+H++ V T
Sbjct: 78 SELQISKHDLGVRNT 92
>sp|Q8U0K9|TOP6A_PYRFU Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=top6A PE=3
SV=1
Length = 382
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 52 CHARRIDILLSVLLIVQKLLQENIHMSKRDIYYM--------HPSLYSEQSIVDQAINDI 103
HAR+ L ++ V++L+ E H S R+ YY H + + +QS D I D+
Sbjct: 76 AHARKFMQTLILMAYVKRLVSEGKHASLREAYYANKHTIPGTHENTFEDQSESDPIIEDL 135
Query: 104 CILLQCSRHNINVV 117
+L R +++
Sbjct: 136 ERMLGVLREEMHIT 149
>sp|P23179|SPO11_YEAST Meiosis-specific protein SPO11 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO11 PE=1 SV=1
Length = 398
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 22 FRNYCKNLDAHCS---CSYDFP-QGQEILTLEKQCHARRIDILLSVLLIVQKLLQENIHM 77
F+N K D + DFP G + T Q +R ILL++L +V + L +
Sbjct: 71 FQNKKKKGDTSSPDIHTTLDFPLNGPHLCT--HQFKLKRCAILLNLLKVVMEKLPLGKNT 128
Query: 78 SKRDIYYMHPSLYSEQSIVDQAINDICILLQCS-RHNINVVGTSLELLILP 127
+ RDI+Y + L+ Q+ V Q ++ I + S R ++N++ L+ P
Sbjct: 129 TVRDIFYSNVELFQRQANVVQWLDVIRFNFKLSPRKSLNIIPAQKGLVYSP 179
>sp|Q9V134|TOP6A_PYRAB Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=top6A PE=3 SV=1
Length = 382
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 52 CHARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHP--------SLYSEQSIVDQAINDI 103
HAR+ L ++ +++L+ E H S R+ YY + + + +QS D I D+
Sbjct: 76 AHARKFTQTLILMAYIKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSESDPIIEDL 135
Query: 104 CILLQCSRHNINVV 117
+L R +++
Sbjct: 136 ERMLGVLREEMHIT 149
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123
PE=1 SV=1
Length = 1318
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 50 KQCHARRIDILLSVLLIVQKLLQENI-HMSKRDIYYMHPSLYSEQSIVD 97
++C RR DIL + L QK+ E + H+S+R + ++H ++YS++ ++D
Sbjct: 795 RRCPKRRKDIL-AELTKSQKVFSEKLDHLSRR-LAWVHATVYSQEKMLD 841
>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2
SV=1
Length = 1314
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 50 KQCHARRIDILLSVLLIVQKLLQENI-HMSKRDIYYMHPSLYSEQSIVD 97
++C RR DIL + L QK+ E + H+S+R + ++H ++YS++ ++D
Sbjct: 791 RRCPKRRKDIL-AELTKSQKVFSEKLDHLSRR-LAWVHATVYSQEKMLD 837
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1
SV=1
Length = 1314
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 50 KQCHARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHPSLYSEQSIVD 97
++C RR DIL + L QK+ E + R + ++H ++YS++ ++D
Sbjct: 791 RRCPKRRKDIL-AELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMLD 837
>sp|Q5JH82|TOP6A_PYRKO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=top6A PE=3
SV=1
Length = 385
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 52 CHARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHP--------SLYSEQSIVDQAINDI 103
HAR+ L ++ V++L+ E H S R+ YY + + + +QS D I D+
Sbjct: 79 AHARKFMQTLLIMAYVKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSESDPIIEDL 138
Query: 104 CILLQCSRHNINVV 117
+ R +++
Sbjct: 139 ERMFGVLREEMHIT 152
>sp|O59209|TOP6A_PYRHO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=top6A PE=3 SV=2
Length = 382
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 52 CHARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHP--------SLYSEQSIVDQAINDI 103
HAR+ L ++ +++L+ E H S R+ YY + + + +QS D I D+
Sbjct: 76 AHARKFMQTLILMAYIKRLVSEGKHASLREAYYANKHTVPGTRENTFEDQSESDPIIEDL 135
Query: 104 CILLQCSRHNINVV 117
+L R +++
Sbjct: 136 ERMLGVLREEMHIT 149
>sp|Q4A8N4|UNG_MYCH7 Uracil-DNA glycosylase OS=Mycoplasma hyopneumoniae (strain 7448)
GN=ung PE=3 SV=1
Length = 219
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 56 RIDILLSVLLIVQKLLQENIHMSKRDIY-YMHPSLYS-----EQSIVDQAINDICILLQC 109
++DI+ +L KL +NI++ K+ ++ Y HPS +S + S+V + IND L +
Sbjct: 153 KVDIVFLLLGKKAKLAVKNINLEKQKVFAYSHPSPFSFAKSLKNSMVFRKIND--FLKEK 210
Query: 110 SRHNIN 115
R IN
Sbjct: 211 KRLEIN 216
>sp|Q1RJR4|Y319_RICBR Putative ankyrin repeat protein RBE_0319 OS=Rickettsia bellii
(strain RML369-C) GN=RBE_0319 PE=4 SV=1
Length = 719
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 14/63 (22%)
Query: 59 ILLSVLLIVQKLL-QENIHMSKRDIYYMHPSLYSEQSIVDQAIND-----ICILLQCSRH 112
I + L IV+KLL ENI ++K++IY +I++QAIND + +LL C
Sbjct: 451 ITFNKLDIVKKLLSHENIEVNKKNIYGF--------TILEQAINDDKLEIVKLLLSCKSL 502
Query: 113 NIN 115
IN
Sbjct: 503 EIN 505
>sp|Q9EPB1|DPP2_RAT Dipeptidyl peptidase 2 OS=Rattus norvegicus GN=Dpp7 PE=1 SV=1
Length = 500
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 90 YSEQSIVDQAINDICILLQCSRHNINV 116
Y++ V+QA+ D +LLQ RHN+ V
Sbjct: 135 YTQLLTVEQALADFAVLLQALRHNLGV 161
>sp|Q493W4|PSD_BLOPB Phosphatidylserine decarboxylase proenzyme OS=Blochmannia
pennsylvanicus (strain BPEN) GN=psd PE=3 SV=1
Length = 295
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 38 DFPQGQEILTLEKQCHARRIDILLSVLLI--------VQKLLQENIHMSKRDIYYMHPSL 89
D+ T + +AR ID S L+I + K+ Q NI K Y++ L
Sbjct: 59 DYATFNAFFTRKLHKNARPIDTNPSTLIIPADGIITQIGKINQTNIFRVKNAPYHLDGLL 118
Query: 90 YSEQSIVDQAINDICILL-----QCSRHNINVVGTSLELLILP 127
+I+D IN +++ C R + GT E+L +P
Sbjct: 119 AGHDNIIDYFINGSFVIIYIPPQNCHRIYMPCTGTLREVLYIP 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,981,257
Number of Sequences: 539616
Number of extensions: 1493588
Number of successful extensions: 4346
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4333
Number of HSP's gapped (non-prelim): 27
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)