Query 043133
Match_columns 131
No_of_seqs 161 out of 335
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zbk_A Type II DNA topoisomera 100.0 7.9E-33 2.7E-37 230.9 4.0 121 2-130 21-169 (389)
2 2q2e_A Type II DNA topoisomera 100.0 1.2E-32 4E-37 228.2 0.2 122 1-130 23-157 (369)
3 1d3y_A DNA topoisomerase VI A 99.9 1.2E-25 4.2E-30 181.9 6.3 81 50-130 1-86 (301)
4 3vxv_A Methyl-CPG-binding doma 85.8 0.45 1.5E-05 30.2 2.3 48 74-122 20-69 (69)
5 2jrh_A Mitogen-activated prote 78.7 1.7 5.7E-05 29.2 3.0 30 79-108 40-72 (94)
6 2c60_A Human mitogen-activated 74.5 2.5 8.4E-05 29.1 3.0 28 79-106 67-97 (111)
7 2npt_B Mitogen-activated prote 74.2 1.7 5.7E-05 29.5 2.0 28 79-106 56-86 (100)
8 2cu1_A Mitogen-activated prote 69.2 4.2 0.00014 27.7 3.2 28 79-106 44-74 (103)
9 2ky8_A Methyl-CPG-binding doma 68.1 2.5 8.6E-05 26.8 1.8 36 74-114 27-64 (72)
10 1d9n_A Methyl-CPG-binding prot 55.9 5.5 0.00019 25.5 1.7 30 73-102 24-55 (75)
11 1u9d_A Hypothetical protein VC 53.7 9.7 0.00033 26.5 2.9 26 93-118 30-55 (122)
12 3isp_A HTH-type transcriptiona 48.3 20 0.00069 26.2 4.1 35 87-122 28-65 (303)
13 1ub1_A MECP2, attachment regio 45.9 5.4 0.00019 28.4 0.5 49 73-122 51-101 (133)
14 3c2i_A Methyl-CPG-binding prot 33.8 30 0.001 23.2 2.7 41 73-114 37-79 (97)
15 3hhg_A Transcriptional regulat 25.3 39 0.0013 24.4 2.3 35 88-122 26-63 (306)
16 3szp_A Transcriptional regulat 24.5 32 0.0011 24.4 1.7 35 88-122 24-61 (291)
17 3fxq_A LYSR type regulator of 24.0 51 0.0017 24.0 2.8 36 87-122 24-62 (305)
18 1otf_A 4-oxalocrotonate tautom 23.7 76 0.0026 17.7 3.0 25 93-117 17-41 (62)
19 3m21_A Probable tautomerase HP 22.9 79 0.0027 18.4 3.0 26 93-118 20-45 (67)
20 2opa_A Probable tautomerase YW 22.7 83 0.0028 17.5 3.0 25 93-117 17-41 (61)
21 3m20_A 4-oxalocrotonate tautom 21.7 94 0.0032 17.8 3.2 27 93-119 16-42 (62)
22 2esn_A Probable transcriptiona 21.2 41 0.0014 24.4 1.7 36 87-122 32-70 (310)
No 1
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.97 E-value=7.9e-33 Score=230.89 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=97.8
Q ss_pred HHHHH----HHHhcCCcceEEEecccCcccCCCCCceeEEeCCCCeEEEe-------ecchhhHHHHHHHHHHHHHHHHH
Q 043133 2 CKSIL----KDITERRSLSISINQFRNYCKNLDAHCSCSYDFPQGQEILT-------LEKQCHARRIDILLSVLLIVQKL 70 (131)
Q Consensus 2 ~~~i~----~~l~~g~~P~i~l~~r~~~~~n~~~~~~~~yd~~~g~~~l~-------~~~~~~~~kf~~~l~vl~~i~~l 70 (131)
+.+++ +++++|+.|.|++|+|+.+ | +.||+..|.++++ +.+.++++||+++++||++||++
T Consensus 21 ~~~~~~~~~~~~~~~~~p~~~~p~r~~~--n------~~~d~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~vl~~i~~~ 92 (389)
T 2zbk_A 21 LRDKFLNLVEQLKKGEPLVMEIPMRTLS--N------AIYDEKRKLLLLGEKKLRRNFLDLNEAKRFMQTVLMASIIYDA 92 (389)
T ss_dssp TTHHHHHHHCCCCCSSCCEECCCC-----------------------------CCEETTSSTTHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccccCcC--c------eeeccccceEEecCceeEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555 9999999999999998855 9 9999999988774 55789999999999999999999
Q ss_pred HhcCCccceeeeeccCCC-----------------CCCchHHHHHHHHHHHHHhcCCccccceeecCCceEEeecee
Q 043133 71 LQENIHMSKRDIYYMHPS-----------------LYSEQSIVDQAINDICILLQCSRHNINVVGTSLELLILPRYV 130 (131)
Q Consensus 71 l~~~~~~T~RdiYY~~~~-----------------lF~~Q~~vd~~I~di~~~l~~~R~~L~i~a~~KGlv~G~i~~ 130 (131)
|.+|+++|+|||||++++ +|++|++||++|+|||++||++|++|||+|++||+|+||+.+
T Consensus 93 l~~~~~~T~RdiYY~~~~~~~~~~~~~~~~~~~~~~F~~Q~~~d~~I~di~~~l~~~R~~L~I~a~~kGlv~G~l~i 169 (389)
T 2zbk_A 93 LVSDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEENTWDEQKESDSVIVDIEVFTSLLREEMLILSKEKGKVVGNLRI 169 (389)
T ss_dssp HHTTCCCCHHHHHSCCSCSCCSCCCC-------CCSCCSHHHHHHHHHHHHHHHSCCHHHHTCCCCCCCCBEESEEE
T ss_pred HHcCCccchHHhhccCcccccccccccccccchhhhcCCHHHHHHHHHHHHHHHCCChhhcceEecCCcEEEeeeEE
Confidence 999999999999999999 999999999999999999999999999999999999999875
No 2
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.97 E-value=1.2e-32 Score=228.23 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=98.7
Q ss_pred CHHHHHHHHhcCCcceEEEecccCcccCCCCCceeEEeCCCCeEEEe-------ecchhhHHHHHHHHHHHHHH-HHHHh
Q 043133 1 FCKSILKDITERRSLSISINQFRNYCKNLDAHCSCSYDFPQGQEILT-------LEKQCHARRIDILLSVLLIV-QKLLQ 72 (131)
Q Consensus 1 ~~~~i~~~l~~g~~P~i~l~~r~~~~~n~~~~~~~~yd~~~g~~~l~-------~~~~~~~~kf~~~l~vl~~i-~~ll~ 72 (131)
++.+++++|++|+.|.|++|+|+.+ | +.||++.|.++++ +.+.++++||+++++||++| |+++.
T Consensus 23 ~~~~~~~~l~~~~~p~~~i~~r~~~--n------~~~d~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~vl~~i~~~~l~ 94 (369)
T 2q2e_A 23 IAEKIYNQFEEEVVPSVSLPSRTKA--N------LEYSDESDVWVYGDRESERSAKTVKGAFQLLKTTYATDFLINEHLA 94 (369)
T ss_dssp HHHHHHHTTHHHHTTSCCCCC--------------------------------CCSSTHHHHHHHCC-HHHHHHTTTSST
T ss_pred HHHHHHHHHhcCCCCeEEeeccccC--c------eeecccCCeeeecCceeeEecCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999998755 8 9999999987774 45688999999999999999 99999
Q ss_pred cCCccceeeeeccCC----CCCCchHHHHHHHHHHHHHhcCCccccceeecCCc-eEEeecee
Q 043133 73 ENIHMSKRDIYYMHP----SLYSEQSIVDQAINDICILLQCSRHNINVVGTSLE-LLILPRYV 130 (131)
Q Consensus 73 ~~~~~T~RdiYY~~~----~lF~~Q~~vd~~I~di~~~l~~~R~~L~i~a~~KG-lv~G~i~~ 130 (131)
+|+++|+|||||+++ ++|++|++||++|+|||++||++|++|||+|++|| +|+||+.+
T Consensus 95 ~~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~I~di~~~l~~~R~~L~I~a~~kG~lv~G~l~i 157 (369)
T 2q2e_A 95 RNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPEEDGATMFGPIEI 157 (369)
T ss_dssp TCCCEEHHHHHHHTSSSTTSCCSCTTTHHHHHHHHHHHSCCCGGGGTEECSSCCCCEECSCCC
T ss_pred cCCccchHHhhccCcccchhhccCHHHHHHHHHHHHHHHCCCHHHcceeccCCceEEEEeEEE
Confidence 999999999999999 99999999999999999999999999999999999 99999875
No 3
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=99.92 E-value=1.2e-25 Score=181.90 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcCCccceeeeeccCC----CCCCchHHHHHHHHHHHHHhcCCccccceeecCCc-eE
Q 043133 50 KQCHARRIDILLSVLLIVQKLLQENIHMSKRDIYYMHP----SLYSEQSIVDQAINDICILLQCSRHNINVVGTSLE-LL 124 (131)
Q Consensus 50 ~~~~~~kf~~~l~vl~~i~~ll~~~~~~T~RdiYY~~~----~lF~~Q~~vd~~I~di~~~l~~~R~~L~i~a~~KG-lv 124 (131)
+.++++||+++++||+++|++|++|+++|+|||||+++ ++|++|++||++|+|||++|+++|++|||+|++|| +|
T Consensus 1 ~~~~~~~~~~~~~vl~~i~~~l~~~~~~T~RdiYY~~~~~~~~~F~~Q~~~d~~i~di~~~l~~~R~~L~i~a~~kG~lv 80 (301)
T 1d3y_A 1 TVNQAKIFAQTTKMLEFAKQLLETDDFSTLREAYYVSKNWGEARFDDQQASNNVIEDLEAALGVLREHLGFIPEEDGSSV 80 (301)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHHGGGSGGGCCSSHHHHHHHHHHHHHHHTCCGGGGTEECSSCCCEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhccCCccchhhccCHHHHHHHHHHHHHHHCCCHHHCCeeeCCCceEE
Confidence 35789999999999999999999999999999999998 89999999999999999999999999999999999 99
Q ss_pred Eeecee
Q 043133 125 ILPRYV 130 (131)
Q Consensus 125 ~G~i~~ 130 (131)
+|++.+
T Consensus 81 ~G~l~i 86 (301)
T 1d3y_A 81 VGPLKI 86 (301)
T ss_dssp ESSCEE
T ss_pred EeeeEE
Confidence 999875
No 4
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=85.81 E-value=0.45 Score=30.17 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=35.8
Q ss_pred CCccceeeeeccCCC--CCCchHHHHHHHHHHHHHhcCCccccceeecCCc
Q 043133 74 NIHMSKRDIYYMHPS--LYSEQSIVDQAINDICILLQCSRHNINVVGTSLE 122 (131)
Q Consensus 74 ~~~~T~RdiYY~~~~--lF~~Q~~vd~~I~di~~~l~~~R~~L~i~a~~KG 122 (131)
|....+.|+||.+|. -|.+-.++.+.+.+-... +++.+++.-.+.+||
T Consensus 20 G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~-~l~~~~FdF~~p~~~ 69 (69)
T 3vxv_A 20 GKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET-FLKPEDFNFTVLPKG 69 (69)
T ss_dssp STTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC-CCCGGGSCCCCCCC-
T ss_pred CCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC-CCCHHHcceeCCCCC
Confidence 455668899999986 699999999999886432 567777776666554
No 5
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=78.72 E-value=1.7 Score=29.19 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.4
Q ss_pred eeeeeccCCCC---CCchHHHHHHHHHHHHHhc
Q 043133 79 KRDIYYMHPSL---YSEQSIVDQAINDICILLQ 108 (131)
Q Consensus 79 ~RdiYY~~~~l---F~~Q~~vd~~I~di~~~l~ 108 (131)
.=||||++.++ -.+|...|++|+-+-...+
T Consensus 40 ~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~~ 72 (94)
T 2jrh_A 40 PLDLHYMNNELSILLKNQDDLDKAIDILDRSSS 72 (94)
T ss_dssp SEEEEEECSSCEEECCSHHHHHHHHHHHHHSTT
T ss_pred eeeeEEecceeEEeccCHHHHHHHHHHhccCcc
Confidence 34999999987 6799999999998665443
No 6
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=74.53 E-value=2.5 Score=29.09 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=23.2
Q ss_pred eeeeeccCCCC---CCchHHHHHHHHHHHHH
Q 043133 79 KRDIYYMHPSL---YSEQSIVDQAINDICIL 106 (131)
Q Consensus 79 ~RdiYY~~~~l---F~~Q~~vd~~I~di~~~ 106 (131)
.=||||++.++ -.+|...|++|+-+-..
T Consensus 67 ~ldl~y~nnEL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 67 PLDLHYMNNELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp CCEEEEECSSCEEECCSHHHHHHHHHHHHHC
T ss_pred eeeeEEecceEEEecccHHHHHHHHHHhccC
Confidence 34999999987 67999999999976544
No 7
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=74.17 E-value=1.7 Score=29.51 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.1
Q ss_pred eeeeeccCCCC---CCchHHHHHHHHHHHHH
Q 043133 79 KRDIYYMHPSL---YSEQSIVDQAINDICIL 106 (131)
Q Consensus 79 ~RdiYY~~~~l---F~~Q~~vd~~I~di~~~ 106 (131)
.=||||++.++ -.+|...|++|+-+-..
T Consensus 56 ~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 56 SMDLHYTNNELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp CEEEEEEETTEEEECCCHHHHHHHHHHHHHC
T ss_pred eeeeEEecceeEEecccHHHHHHHHHHhccC
Confidence 34999999886 67999999999976543
No 8
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=69.19 E-value=4.2 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.2
Q ss_pred eeeeeccCCCC---CCchHHHHHHHHHHHHH
Q 043133 79 KRDIYYMHPSL---YSEQSIVDQAINDICIL 106 (131)
Q Consensus 79 ~RdiYY~~~~l---F~~Q~~vd~~I~di~~~ 106 (131)
.=||||++.++ -.+|.+.|++|+-+-..
T Consensus 44 ~ldL~y~n~EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 44 SMDLHYTNNELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp CEEEEECSSSSCEECCSHHHHHHHHHHHHHC
T ss_pred eeeEEEecceEEEeccCHHHHHHHHHHHccC
Confidence 44999999887 57999999999986554
No 9
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=68.11 E-value=2.5 Score=26.82 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=27.7
Q ss_pred CCccceeeeeccCCC--CCCchHHHHHHHHHHHHHhcCCcccc
Q 043133 74 NIHMSKRDIYYMHPS--LYSEQSIVDQAINDICILLQCSRHNI 114 (131)
Q Consensus 74 ~~~~T~RdiYY~~~~--lF~~Q~~vd~~I~di~~~l~~~R~~L 114 (131)
|.+..+.|+||.+|. -|.+-.+|.+.+.. +++.+++
T Consensus 27 g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~-----~l~~~~F 64 (72)
T 2ky8_A 27 GLSAGKSDVYYFSPSGKKFRSKPQLARYLGN-----AVDLSCF 64 (72)
T ss_dssp STTTTCEEEEEECTTCCEEESHHHHHHHHTT-----SSCCTTC
T ss_pred CCCCCceEEEEECCCCCEeEcHHHHHHHHhc-----CCChhhc
Confidence 445678999999985 59999999998876 4555554
No 10
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=55.94 E-value=5.5 Score=25.46 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=24.3
Q ss_pred cCCccceeeeeccCCC--CCCchHHHHHHHHH
Q 043133 73 ENIHMSKRDIYYMHPS--LYSEQSIVDQAIND 102 (131)
Q Consensus 73 ~~~~~T~RdiYY~~~~--lF~~Q~~vd~~I~d 102 (131)
+|.++.+.|+||.++. -|.+..++.+.++.
T Consensus 24 ~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 24 SGATCGRSDTYYQSPTGDRIRSKVELTRYLGP 55 (75)
T ss_dssp SSCTTCCCCEEEECSSSCEECSTHHHHHHHCT
T ss_pred CCCCCCceEEEEECCCCCeeecHHHHHHHhcc
Confidence 3445568999999985 69999999999863
No 11
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=53.72 E-value=9.7 Score=26.47 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhcCCccccceee
Q 043133 93 QSIVDQAINDICILLQCSRHNINVVG 118 (131)
Q Consensus 93 Q~~vd~~I~di~~~l~~~R~~L~i~a 118 (131)
|..+..++++|+.+++|+|+.+-+.-
T Consensus 30 ~~lS~~Lid~La~i~~~~~e~fTle~ 55 (122)
T 1u9d_A 30 ESLVPTLLNELSSLLSTARNAFTFEL 55 (122)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHhHHHHHHHHHHHCCCcccEEEEE
Confidence 57788999999999999999987643
No 12
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=48.31 E-value=20 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=31.6
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCC---ccccceeecCCc
Q 043133 87 PSLYSEQSIVDQAINDICILLQCS---RHNINVVGTSLE 122 (131)
Q Consensus 87 ~~lF~~Q~~vd~~I~di~~~l~~~---R~~L~i~a~~KG 122 (131)
..|+-+|..+-+.|..++..||++ |.- ++.+++.|
T Consensus 28 ~~L~isq~avS~~i~~LE~~lg~~Lf~R~~-~~~lT~~G 65 (303)
T 3isp_A 28 ERLHVTPSAVSQRIKSLEQQVGQVLVVREK-PCRATTAG 65 (303)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHTSCCEECSS-SCEECGGG
T ss_pred HHhCCChHHHHHHHHHHHHHhCCeeEEcCC-CCeeCchH
Confidence 568899999999999999999986 777 99999888
No 13
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=45.89 E-value=5.4 Score=28.37 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=34.3
Q ss_pred cCCccceeeeeccCCC--CCCchHHHHHHHHHHHHHhcCCccccceeecCCc
Q 043133 73 ENIHMSKRDIYYMHPS--LYSEQSIVDQAINDICILLQCSRHNINVVGTSLE 122 (131)
Q Consensus 73 ~~~~~T~RdiYY~~~~--lF~~Q~~vd~~I~di~~~l~~~R~~L~i~a~~KG 122 (131)
+|.++.+-|+||.++. -|.+-.++.+.++.... .+++.++|......||
T Consensus 51 sG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~-~~~~~e~FdF~~~gk~ 101 (133)
T 1ub1_A 51 SGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGD-TSLDPNDFDFTVTGRG 101 (133)
T ss_dssp CSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCC-CSCCGGGCCCCCCCCS
T ss_pred CCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCc-cCCCHhHCccccCCCC
Confidence 4556678999999985 69999999988864432 2466666665544444
No 14
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=33.77 E-value=30 Score=23.15 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=29.2
Q ss_pred cCCccceeeeeccCCC--CCCchHHHHHHHHHHHHHhcCCcccc
Q 043133 73 ENIHMSKRDIYYMHPS--LYSEQSIVDQAINDICILLQCSRHNI 114 (131)
Q Consensus 73 ~~~~~T~RdiYY~~~~--lF~~Q~~vd~~I~di~~~l~~~R~~L 114 (131)
+|.+..+-|+||.+|. -|.+-.++.+.++.-... +++-+++
T Consensus 37 ~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g~~-~~~~~~F 79 (97)
T 3c2i_A 37 SGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDT-SLDPNDF 79 (97)
T ss_dssp SSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHTCC-SSCTTTC
T ss_pred CCCCCCcceEEEECCCCCEEECHHHHHHHHHHCCCC-CCCHhhc
Confidence 3455678899999985 699999999999865431 3444444
No 15
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=25.27 E-value=39 Score=24.41 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=30.4
Q ss_pred CCCCchHHHHHHHHHHHHHhcCC---ccccceeecCCc
Q 043133 88 SLYSEQSIVDQAINDICILLQCS---RHNINVVGTSLE 122 (131)
Q Consensus 88 ~lF~~Q~~vd~~I~di~~~l~~~---R~~L~i~a~~KG 122 (131)
.|+-+|..+-+.|..|+..||++ |..=++.+++.|
T Consensus 26 ~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G 63 (306)
T 3hhg_A 26 QLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEG 63 (306)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhCCeeEeecCCCeeECHhH
Confidence 47889999999999999999986 777778888777
No 16
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=24.47 E-value=32 Score=24.42 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCCCchHHHHHHHHHHHHHhcCC---ccccceeecCCc
Q 043133 88 SLYSEQSIVDQAINDICILLQCS---RHNINVVGTSLE 122 (131)
Q Consensus 88 ~lF~~Q~~vd~~I~di~~~l~~~---R~~L~i~a~~KG 122 (131)
.|+-+|..+-+.|..++..||++ |..=++.+++.|
T Consensus 24 ~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G 61 (291)
T 3szp_A 24 KTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAG 61 (291)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTCCCEEEETTEEEECHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhCCceEeecCCCcccCHhH
Confidence 47889999999999999999996 777777777776
No 17
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=24.00 E-value=51 Score=23.97 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCC---ccccceeecCCc
Q 043133 87 PSLYSEQSIVDQAINDICILLQCS---RHNINVVGTSLE 122 (131)
Q Consensus 87 ~~lF~~Q~~vd~~I~di~~~l~~~---R~~L~i~a~~KG 122 (131)
..|+-+|..+-+.|..|+..||++ |..=++.+++.|
T Consensus 24 ~~L~isq~avS~~i~~LE~~lg~~Lf~R~~r~~~lT~~G 62 (305)
T 3fxq_A 24 QLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFG 62 (305)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCeeEEecCCCccCCHhH
Confidence 357889999999999999999997 777778887777
No 18
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=23.74 E-value=76 Score=17.69 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHhcCCcccccee
Q 043133 93 QSIVDQAINDICILLQCSRHNINVV 117 (131)
Q Consensus 93 Q~~vd~~I~di~~~l~~~R~~L~i~ 117 (131)
|+-++.+-+-++..||++.++..|.
T Consensus 17 ~~l~~~i~~~l~~~lg~p~~~v~v~ 41 (62)
T 1otf_A 17 ETLIRQVSEAMANSLDAPLERVRVL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEE
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEE
Confidence 4556777777788899998887764
No 19
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=22.85 E-value=79 Score=18.39 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHhcCCccccceee
Q 043133 93 QSIVDQAINDICILLQCSRHNINVVG 118 (131)
Q Consensus 93 Q~~vd~~I~di~~~l~~~R~~L~i~a 118 (131)
|+-+..+-+-++..+|+++++..|+=
T Consensus 20 ~~l~~~lt~~l~~~lg~p~~~v~V~i 45 (67)
T 3m21_A 20 QQLIEGVSDLMVKVLNKNKASIVVII 45 (67)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHHHHHCcCcccEEEEE
Confidence 45566677777888999998887753
No 20
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=22.68 E-value=83 Score=17.51 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHhcCCcccccee
Q 043133 93 QSIVDQAINDICILLQCSRHNINVV 117 (131)
Q Consensus 93 Q~~vd~~I~di~~~l~~~R~~L~i~ 117 (131)
|+-+..+-+-++..||+++++..|.
T Consensus 17 ~~l~~~i~~~l~~~lg~~~~~v~V~ 41 (61)
T 2opa_A 17 RNLVEKVTEAVKETTGASEEKIVVF 41 (61)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred HHHHHHHHHHHHHHhCcCcCeEEEE
Confidence 4556677777788899998877664
No 21
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=21.73 E-value=94 Score=17.80 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHhcCCccccceeec
Q 043133 93 QSIVDQAINDICILLQCSRHNINVVGT 119 (131)
Q Consensus 93 Q~~vd~~I~di~~~l~~~R~~L~i~a~ 119 (131)
|+-+..+-+-++..+|+++++..|+=.
T Consensus 16 ~~L~~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 16 REFVERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 455666667777889999998877643
No 22
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=21.19 E-value=41 Score=24.44 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=29.5
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCC---ccccceeecCCc
Q 043133 87 PSLYSEQSIVDQAINDICILLQCS---RHNINVVGTSLE 122 (131)
Q Consensus 87 ~~lF~~Q~~vd~~I~di~~~l~~~---R~~L~i~a~~KG 122 (131)
..|+-+|..+-+.|..|+..||++ |..=++.+++.|
T Consensus 32 ~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~lT~~G 70 (310)
T 2esn_A 32 SELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRA 70 (310)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHH
T ss_pred HHhCCChHHHHHHHHHHHHhhCCcceeecCCCccccHHH
Confidence 357889999999999999999986 666667776666
Done!