BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043134
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 94 PRVFSCNYCQRKFYSSQALGGHQNAH 119
PR ++C++C+R+F S+QALGGH N H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 122 ERTLAKRGQRISTPSSSSSLAFGHHHNPNSYTHRSYPSLASLPLHGSFNRSLGIQVHSMI 181
++ L K Q + + +SL + HN N YT Y LASL H S G ++ +
Sbjct: 305 DKALLKASQDMFDKKTKASL-YLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFS 363
Query: 182 HKPSFIPSTINSSYSYSQNGWPRQPIDQ 209
+ S S+ SQ+ P P+D+
Sbjct: 364 YGSGLAASFF--SFRVSQDAAPGSPLDK 389
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 59 GSKP-ELNLIDCFKSTDSSQDSLENNDIHRQGNETEPRVFSCNYCQRKFYSSQALGGHQN 117
G KP + + DC + S D L+ + Q T + F C CQRKF S L H
Sbjct: 33 GEKPYQCDFKDCERRFSRS-DQLKRH----QRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Query: 118 AHKRERTLAKRGQRISTPSSSSSLAFGHH 146
H E+ + R + S HH
Sbjct: 88 THTGEKPFSCRWPSCQKKFARSDELVRHH 116
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 95 RVFSCNYCQRKFYSSQALGGHQNAHKRER 123
++F CN C++ F S +L HQ H E+
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2DMI|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Like Domains Of Human Teashirt Homolog 3
Length = 115
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 85 IHRQGNETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRISTPSS 137
+ +G E +V C YC F S Q L H K Q++S PSS
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM-------IKTKHYQKVSGPSS 114
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 95 RVFSCNYCQRKFYSSQALGGHQN 117
+VF C YC FYSS L H N
Sbjct: 55 QVFPCKYCPATFYSSPGLTRHIN 77
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 95 RVFSCNYCQRKFYSSQALGGHQNAHKRERT 124
R F CN C + F L GH H RE++
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKS 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,281,556
Number of Sequences: 62578
Number of extensions: 270724
Number of successful extensions: 918
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 30
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)