BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043135
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|F Chain F, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 506
Score = 301 bits (771), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 192/505 (38%), Positives = 270/505 (53%), Gaps = 78/505 (15%)
Query: 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQ- 59
G ++ A L +I +N +Y +QLLE D ++ WGRVG T+ G L+
Sbjct: 33 GGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVG-----TVIGSNKLEQ 87
Query: 60 ----DTAINEF----EQK----WQ---FTSYPKCYTWLERDYSANQTEESVVHEKPDSTI 104
+ AI F E+K W FT YPK + LE DY Q EE+V +
Sbjct: 88 MPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPLEIDYG--QDEEAV------KKL 139
Query: 105 NIQP-QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKR 163
+ P +KL V + +I ++ MK+ M+E + K+PLG LSK I Y +L
Sbjct: 140 TVNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSE 199
Query: 164 IADVI-HLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEV 222
+ + ++ LS FYT+IPHDFG +K +++ ++ K EM+ L +IEV
Sbjct: 200 VQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKK--PPLLNNADSVQAKAEMLDNLLDIEV 257
Query: 223 ATNLLE---DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSII 279
A +LL DD+ DP+ Y++L T + D S
Sbjct: 258 AYSLLRGGSDDSS--KDPIDVNYEKLK---TDIKVVDRDS-------------------- 292
Query: 280 ILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRL 339
E+ I KY+ NTHA TH++Y ++++ IF++EREGE +R+K NR LLWHGSR
Sbjct: 293 --EEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRT 350
Query: 340 TNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVAL 399
TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S G++LL EVAL
Sbjct: 351 TNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVAL 410
Query: 400 GDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLE--------------DGGHLL 445
G+M EL A S KLP GK KG+G+T PDP +L+ + LL
Sbjct: 411 GNMYELKHA-SHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLL 469
Query: 446 YNEYIVYSVDQIRMRYVVQVNFKYK 470
YNEYIVY + Q+ ++Y++++ F +K
Sbjct: 470 YNEYIVYDIAQVNLKYLLKLKFNFK 494
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
pdb|1GS0|B Chain B, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
Length = 351
Score = 301 bits (770), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 226/377 (59%), Gaps = 47/377 (12%)
Query: 111 TKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHL 170
++L+ RV + L LICN+ M+++M+E+ Y+ + PLG L+ + I GY LK+I D I
Sbjct: 2 SQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCIRA 61
Query: 171 PDR-RKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLED 229
R L + EFYT IPHDFG VI T ++L K+++++ALG+IE+A L++
Sbjct: 62 GQHGRALVEACNEFYTRIPHDFGLSI--PPVIRTEKELSDKVKLLEALGDIEIALKLVKS 119
Query: 230 DTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAK 289
+ Q PL +Y+ LHC L PL H S F+ I++
Sbjct: 120 ERQGLEHPLDQHYRNLHCALRPL------DHESNEFKV-------------------ISQ 154
Query: 290 YLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQG 349
YL +THA TH Y++ ++ +F VE+EGE E F++ + NRMLLWHGSRL+NW GILS G
Sbjct: 155 YLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFRE--DLPNRMLLWHGSRLSNWVGILSHG 212
Query: 350 LRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSAN 409
LR+APPEAP TGYMFGKG+YFADM S SA+YC AS G+LLL EVALG +ELL AN
Sbjct: 213 LRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEAN 272
Query: 410 SDADKLPDGKLITKGVGQTAPDPLEAETLE-----------------DGGHLLYNEYIVY 452
A L GK TKG+G+ AP P TL +G L YNE+IVY
Sbjct: 273 PKAQGLLRGKHSTKGMGKMAPSPAHFITLNGSTVPLGPASDTGILNPEGYTLNYNEFIVY 332
Query: 453 SVDQIRMRYVVQVNFKY 469
S +Q+RMRY++++ F +
Sbjct: 333 SPNQVRMRYLLKIQFNF 349
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
Length = 368
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 223/372 (59%), Gaps = 47/372 (12%)
Query: 116 RVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDR-R 174
RV + + LICN+ M+++MME+ YN K PLG L+ + I GY LK+I D I R
Sbjct: 26 RVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGR 85
Query: 175 KLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQ 234
L + EFYT IPHDFG + +I T ++L K+++++ALG+IE+A L++ + Q
Sbjct: 86 ALMEACNEFYTRIPHDFGLRT--PPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSP 143
Query: 235 ADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNT 294
PL +Y+ LHC L PL H S F+ I++YL +T
Sbjct: 144 EHPLDQHYRNLHCALRPL------DHESYEFKV-------------------ISQYLQST 178
Query: 295 HAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAP 354
HA THS Y++ ++ +F VE++GE E F++ + NRMLLWHGSR++NW GILS GLRIA
Sbjct: 179 HAPTHSDYTMTLLDLFEVEKDGEKEAFRE--DLHNRMLLWHGSRMSNWVGILSHGLRIAH 236
Query: 355 PEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADK 414
PEAP TGYMFGKG+YFADM S SA+YC AS G+LLL EVALG +ELL AN A+
Sbjct: 237 PEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEG 296
Query: 415 LPDGKLITKGVGQTAPDPLEAETLE-----------------DGGHLLYNEYIVYSVDQI 457
L GK TKG+G+ AP TL DG L YNEYIVY+ +Q+
Sbjct: 297 LLQGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQV 356
Query: 458 RMRYVVQVNFKY 469
RMRY+++V F +
Sbjct: 357 RMRYLLKVQFNF 368
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK0|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK1|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1UK1|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1WOK|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|C Chain C, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|D Chain D, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|2RCW|A Chain A, Parp Complexed With A620223
Length = 350
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 216/378 (57%), Gaps = 48/378 (12%)
Query: 111 TKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVI-H 169
+KL V + +I ++ MK+ M+E + K+PLG LSK I Y +L + +
Sbjct: 2 SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQ 61
Query: 170 LPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE- 228
++ LS FYT+IPHDFG +K +++ ++ K+EM+ L +IEVA +LL
Sbjct: 62 GSSDSQILDLSNRFYTLIPHDFGMKKPP--LLNNADSVQAKVEMLDNLLDIEVAYSLLRG 119
Query: 229 --DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFS 286
DD+ DP+ Y++L T + D S E+
Sbjct: 120 GSDDSS--KDPIDVNYEKLK---TDIKVVDRDS----------------------EEAEI 152
Query: 287 IAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGIL 346
I KY+ NTHA TH++Y ++++ IF++EREGE +R+K NR LLWHGSR TN+ GIL
Sbjct: 153 IRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGIL 212
Query: 347 SQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELL 406
SQGLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S G++LL EVALG+M EL
Sbjct: 213 SQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELK 272
Query: 407 SANSDADKLPDGKLITKGVGQTAPDPLEAETLE--------------DGGHLLYNEYIVY 452
A S KLP GK KG+G+T PDP +L+ + LLYNEYIVY
Sbjct: 273 HA-SHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVY 331
Query: 453 SVDQIRMRYVVQVNFKYK 470
+ Q+ ++Y++++ F +K
Sbjct: 332 DIAQVNLKYLLKLKFNFK 349
>pdb|2RD6|A Chain A, Parp Complexed With A861695
pdb|3GJW|A Chain A, Parp Complexed With A968427
pdb|3GN7|A Chain A, Parp Complexed With A861696
pdb|3L3M|A Chain A, Parp Complexed With A927929
pdb|3L3L|A Chain A, Parp Complexed With A906894
Length = 350
Score = 264 bits (674), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 215/378 (56%), Gaps = 48/378 (12%)
Query: 111 TKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHL 170
+KL V + +I ++ MK+ M+E + K+PLG LSK I Y +L + +
Sbjct: 2 SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQ 61
Query: 171 -PDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE- 228
++ LS FYT+IPHDFG +K +++ ++ K EM+ L +IEVA +LL
Sbjct: 62 GSSDSQILDLSNRFYTLIPHDFGMKKPP--LLNNADSVQAKAEMLDNLLDIEVAYSLLRG 119
Query: 229 --DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFS 286
DD+ DP+ Y++L T + D S E+
Sbjct: 120 GSDDSS--KDPIDVNYEKLK---TDIKVVDRDS----------------------EEAEI 152
Query: 287 IAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGIL 346
I KY+ NTHA TH++Y ++++ IF++EREGE +R+K NR LLWHGSR TN+ GIL
Sbjct: 153 IRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGIL 212
Query: 347 SQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELL 406
SQGLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S G++LL EVALG+M EL
Sbjct: 213 SQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELK 272
Query: 407 SANSDADKLPDGKLITKGVGQTAPDPLEAETLE--------------DGGHLLYNEYIVY 452
A S KLP GK KG+G+T PDP +L+ + LLYNEYIVY
Sbjct: 273 HA-SHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVY 331
Query: 453 SVDQIRMRYVVQVNFKYK 470
+ Q+ ++Y++++ F +K
Sbjct: 332 DIAQVNLKYLLKLKFNFK 349
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp-
Ribose) Polymerase Complexed With A Benzimidazole
Inhibitor
Length = 350
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 218/376 (57%), Gaps = 44/376 (11%)
Query: 111 TKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIH- 169
+KL + + +I ++ MK+ M+E + K+PLG LSK I Y +L + +
Sbjct: 2 SKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSD 61
Query: 170 LPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLED 229
++ LS FYT+IPHDFG +K ++ + ++ K++M+ L +IEVA +LL
Sbjct: 62 GGSESQILDLSNRFYTLIPHDFGMKK--PPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRG 119
Query: 230 DTQI-QADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIA 288
+ DP+ Y++L T + D S +K I
Sbjct: 120 GNEDGDKDPIDINYEKLR---TDIKVVDKDSEEAKI----------------------IK 154
Query: 289 KYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQ 348
+Y+ NTHA TH++Y + +V+IFR+EREGE++R+K NR LLWHGSR TN+ GILSQ
Sbjct: 155 QYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQ 214
Query: 349 GLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSA 408
GLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S A G++LL EVALG+M EL +A
Sbjct: 215 GLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNA 274
Query: 409 NSDADKLPDGKLITKGVGQTAPDPLEAETLE--------------DGGHLLYNEYIVYSV 454
S KLP GK KG+G+TAPDP TL+ + LLYNEYIVY V
Sbjct: 275 -SHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDV 333
Query: 455 DQIRMRYVVQVNFKYK 470
Q+ ++Y++++ F YK
Sbjct: 334 AQVNLKYLLKLKFNYK 349
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With Carba-Nad
pdb|1PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3,4-Dihydro-5-Methyl-Isoquinolinone
pdb|2PAW|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
pdb|2PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 4-Amino-1,8-Naphthalimide
pdb|3PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3-Methoxybenzamide
pdb|4PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With
8-Hydroxy-2-Methyl-3-Hydro-Quinazolin-4-One
Length = 361
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 218/376 (57%), Gaps = 44/376 (11%)
Query: 111 TKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIH- 169
+KL + + +I ++ MK+ M+E + K+PLG LSK I Y +L + +
Sbjct: 10 SKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSD 69
Query: 170 LPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLED 229
++ LS FYT+IPHDFG +K ++ + ++ K++M+ L +IEVA +LL
Sbjct: 70 GGSESQILDLSNRFYTLIPHDFGMKK--PPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRG 127
Query: 230 DTQI-QADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIA 288
+ DP+ Y++L T + D S +K I
Sbjct: 128 GNEDGDKDPIDINYEKLR---TDIKVVDKDSEEAKI----------------------IK 162
Query: 289 KYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQ 348
+Y+ NTHA TH++Y + +V+IFR+EREGE++R+K NR LLWHGSR TN+ GILSQ
Sbjct: 163 QYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQ 222
Query: 349 GLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSA 408
GLRIAPPEAP TGYMFGKG+YFADM S SA+YC+ S A G++LL EVALG+M EL +A
Sbjct: 223 GLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNA 282
Query: 409 NSDADKLPDGKLITKGVGQTAPDPLEAETLE--------------DGGHLLYNEYIVYSV 454
S KLP GK KG+G+TAPDP TL+ + LLYNEYIVY V
Sbjct: 283 -SHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDV 341
Query: 455 DQIRMRYVVQVNFKYK 470
Q+ ++Y++++ F YK
Sbjct: 342 AQVNLKYLLKLKFNYK 357
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Ku0058948
pdb|3C4H|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Dr2313
pdb|3CE0|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Pj34
pdb|3FHB|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzoic Acid
Length = 357
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 174/387 (44%), Gaps = 64/387 (16%)
Query: 109 QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVI 168
Q L+P K ++ I + M K M + + K+PLG LSK I +G++ L+ + + +
Sbjct: 6 QPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEAL 65
Query: 169 HLPDR--RKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNL 226
P + LE+LS FYTVIPH+FG + I++P+ L+ K +M+ L +IE+A L
Sbjct: 66 KGPTDGGQSLEELSSHFYTVIPHNFGHSQ--PPPINSPELLQAKKDMLLVLADIELAQAL 123
Query: 227 L---EDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQ 283
E + ++ P + + L D + K Q LEQ
Sbjct: 124 QAVSEQEKTVEEVP-HPLDRDYQLLKCQLQLLDSGAPEYKVIQ------------TYLEQ 170
Query: 284 TFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWT 343
T S N T + I++V +EGE +RF+ S NR LLWHG+ +
Sbjct: 171 TGS------NHRCPT-------LQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVA 217
Query: 344 GILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADY-----CNASPAATAGVLLLCEVA 398
IL+ GLRI P +G GKG+YFA S SA Y C A G + L EVA
Sbjct: 218 AILTSGLRI----MPHSGGRVGKGIYFASENSKSAGYVIGMKCGAH---HVGYMFLGEVA 270
Query: 399 LGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLE-DGGHLLY----------- 446
LG + + N P G G T PDP + LE DG ++
Sbjct: 271 LGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEF 330
Query: 447 -------NEYIVYSVDQIRMRYVVQVN 466
+EY++Y Q R+RY+++V+
Sbjct: 331 SSSTFSQSEYLIYQESQCRLRYLLEVH 357
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose)
Polymerase-1
Length = 139
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQ- 59
G ++ A L +I +N +Y +QLLE D ++ WGRVG T+ G L+
Sbjct: 39 GGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVG-----TVIGSNKLEQ 93
Query: 60 ----DTAINEF----EQK----WQ---FTSYPKCYTWLE 83
+ AI F E+K W FT YPK + LE
Sbjct: 94 MPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPLE 132
>pdb|2EOC|A Chain A, Solution Structure Of The Wgr Domain From Human Poly [adp-
Ribose] Polymerase-3
Length = 124
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 14/91 (15%)
Query: 5 YDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAIN 64
Y+ LNQTNIE+N+N FY+IQLL+ D ++RWGRVG GQ I L+D A
Sbjct: 33 YNCTLNQTNIENNNNKFYIIQLLQ-DSNRFFTCWNRWGRVGEVGQSKINHFTRLED-AKK 90
Query: 65 EFEQKWQ------------FTSYPKCYTWLE 83
+FE+K++ F S+P YT +E
Sbjct: 91 DFEKKFREKTKNNWAERDHFVSHPGKYTLIE 121
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 318 TERFKKLS----NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 373
T R K++S N N +L+HGS N I+ +G G MFG G+YFA+
Sbjct: 60 THRRKEVSEENHNHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAEN 114
Query: 374 FSNSADYCNASPAATAG-------------VLLLCEVALGDMSELLSANSDADKLPDGKL 420
S S Y T LL C V LG SA A P
Sbjct: 115 SSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHS 174
Query: 421 ITKGVGQTAPDPLE-AETLEDGGHLLYNEYIV 451
+T G+ + + L AE + G Y EY++
Sbjct: 175 VT---GRPSVNGLALAEYVIYRGEQAYPEYLI 203
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 318 TERFKKLS----NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 373
T R K++S N N +L+HGS N I+ +G G MFG G+YFA+
Sbjct: 88 THRRKEVSEENHNHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAEN 142
Query: 374 FSNSADYCNASPAATAG-------------VLLLCEVALGDMSELLSANSDADKLPDGKL 420
S S Y T LL C V LG SA A P
Sbjct: 143 SSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHS 202
Query: 421 ITKGVGQTAPDPLE-AETLEDGGHLLYNEYIV 451
+T G+ + + L AE + G Y EY++
Sbjct: 203 VT---GRPSVNGLALAEYVIYRGEQAYPEYLI 231
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4DVI|B Chain B, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4I9I|A Chain A, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|B Chain B, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|C Chain C, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|D Chain D, Crystal Structure Of Tankyrase 1 With Compound 4
Length = 217
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 40/180 (22%)
Query: 305 DIVQIFRVEREGETERF----KKLS----NSKNRMLLWHGSRLTNWTGILSQGLRIAPPE 356
++++I +V + ERF K++S N N +L+HGS N I+ +G
Sbjct: 43 NVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFIN--AIIHKGF---DER 97
Query: 357 APATGYMFGKGVYFADMFSNSADYCNASPAATAG-------------VLLLCEVALGDMS 403
G MFG G+YFA+ S S Y T +L C V LG
Sbjct: 98 HAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSF 157
Query: 404 ELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVV 463
S A P + +G+ + + L Y EY++Y +Q Y++
Sbjct: 158 LQFSTMKMAHAPPGHHSV---IGRPSVNG-----------LAYAEYVIYRGEQAYPEYLI 203
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 40/180 (22%)
Query: 305 DIVQIFRVEREGETERF----KKLS----NSKNRMLLWHGSRLTNWTGILSQGLRIAPPE 356
++++I +V + ERF K++S N N +L+HGS N I+ +G
Sbjct: 43 NVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFIN--AIIHKGF---DER 97
Query: 357 APATGYMFGKGVYFADMFSNSADYCNASPAATAG-------------VLLLCEVALGDMS 403
G MFG G+YFA+ S S Y T +L C V LG
Sbjct: 98 HAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSF 157
Query: 404 ELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVV 463
S A P + +G+ + + L Y EY++Y +Q Y++
Sbjct: 158 LQFSTIKMAHAPPGHHSV---IGRPSVNG-----------LAYAEYVIYRGEQAYPEYLI 203
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp
Domain
Length = 258
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 40/180 (22%)
Query: 305 DIVQIFRVEREGETERF----KKLS----NSKNRMLLWHGSRLTNWTGILSQGLRIAPPE 356
++++I +V + ERF K++S N N +L+HGS N I+ +G
Sbjct: 79 NVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFIN--AIIHKGF---DER 133
Query: 357 APATGYMFGKGVYFADMFSNSADYCNASPAATAG-------------VLLLCEVALGDMS 403
G MFG G+YFA+ S S Y T +L C V LG
Sbjct: 134 HAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSF 193
Query: 404 ELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVV 463
S A P + +G+ + + L Y EY++Y +Q Y++
Sbjct: 194 LQFSTIKMAHAPPGHHSV---IGRPSVNG-----------LAYAEYVIYRGEQAYPEYLI 239
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 22/100 (22%)
Query: 318 TERFKKLS----NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 373
T R K++S N N +L+HGS N I+ +G G MFG G+YFA+
Sbjct: 88 THRRKEVSEENHNHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAEN 142
Query: 374 FSNSADYCNASPAATAG-------------VLLLCEVALG 400
S S Y T LL C V LG
Sbjct: 143 SSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLG 182
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 190 DFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQ 243
D+ Q +G+++ID P+ L+L + + ALG + ++ + +I PL+++YQ
Sbjct: 227 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI---PLFSHYQ 277
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 190 DFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQ 243
D+ Q +G+++ID P+ L+L + + ALG + ++ + +I PL+++YQ
Sbjct: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI---PLFSHYQ 270
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 190 DFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQ 243
D+ Q +G+++ID P+ L+L + + ALG + ++ + +I PL+++YQ
Sbjct: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI---PLFSHYQ 270
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 31/217 (14%)
Query: 226 LLEDDTQIQADPLY-------AYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSI 278
LLED+ I+AD L +Y+ L+ T +D+ H+ +IGL+
Sbjct: 461 LLEDEASIEADGLIKINADSAGFYRVLYDDAT---FSDVMGHYRDLSPLDRIGLV----- 512
Query: 279 IILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVERE-------GETERFKKLSNS-KNR 330
+ F+ +LL+ H + Y I F E G+ E + L+++ +
Sbjct: 513 ---DDLFA---FLLSGHIDPET-YRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDD 565
Query: 331 MLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAG 390
+ SR+ TG + L+IA Y+ Y +M D+ +A P +
Sbjct: 566 ARAFCRSRMQFLTGKQDENLKIALGRVSRL-YVMVDESYAEEMSKLFKDFDSAEPEMRSS 624
Query: 391 VLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQ 427
+ + GD+ LL D+ D I G+
Sbjct: 625 IATAYALVTGDLKGLLEKFRSVDRDEDRVRIISAFGK 661
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 31/217 (14%)
Query: 226 LLEDDTQIQADPLY-------AYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSI 278
LLED+ I+AD L +Y+ L+ T +D+ H+ +IGL+
Sbjct: 461 LLEDEASIEADGLIKINADSAGFYRVLYDDAT---FSDVMGHYRDLSPLDRIGLV----- 512
Query: 279 IILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVERE-------GETERFKKLSNS-KNR 330
+ F+ +LL+ H + Y I F E G+ E + L+++ +
Sbjct: 513 ---DDLFA---FLLSGHIDPET-YRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDD 565
Query: 331 MLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAG 390
+ SR+ TG + L+IA Y+ Y +M D+ +A P +
Sbjct: 566 ARAFCRSRMQFLTGKQDENLKIALGRVSRL-YVMVDESYAEEMSKLFKDFDSAEPEMRSS 624
Query: 391 VLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQ 427
+ + GD+ LL D+ D I G+
Sbjct: 625 IATAYALVTGDLKGLLEKFRSVDRDEDRVRIISAFGK 661
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 79 YTWLERDYSANQTEESVVHE--KPDSTINIQPQNTKLEPRVAKFLSLICNIS 128
YT+L + Y + E + E KP + + P N +E + + LICN++
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT 234
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 79 YTWLERDYSANQTEESVVHE--KPDSTINIQPQNTKLEPRVAKFLSLICNIS 128
YT+L + Y + E + E KP + + P N +E + + LICN++
Sbjct: 183 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT 234
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 79 YTWLERDYSANQTEESVVHE--KPDSTINIQPQNTKLEPRVAKFLSLICNIS 128
YT+L + Y + E + E KP + + P N +E + + LICN++
Sbjct: 180 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT 231
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 79 YTWLERDYSANQTEESVVHE--KPDSTINIQPQNTKLEPRVAKFLSLICNIS 128
YT+L + Y + E + E KP + + P N +E + + LICN++
Sbjct: 185 YTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,248,013
Number of Sequences: 62578
Number of extensions: 603117
Number of successful extensions: 1354
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 27
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)