Query 043135
Match_columns 470
No_of_seqs 228 out of 997
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03124 poly [ADP-ribose] pol 100.0 7E-120 2E-124 971.7 43.6 442 1-470 173-641 (643)
2 PLN03122 Poly [ADP-ribose] pol 100.0 1E-113 2E-118 946.3 38.4 432 1-470 332-807 (815)
3 PLN03123 poly [ADP-ribose] pol 100.0 8E-111 2E-115 939.7 41.8 426 1-470 516-980 (981)
4 cd01437 parp_like Poly(ADP-rib 100.0 2.4E-87 5.2E-92 683.0 30.3 329 110-466 1-347 (347)
5 KOG1037 NAD+ ADP-ribosyltransf 100.0 9.8E-58 2.1E-62 487.2 10.6 426 1-470 66-524 (531)
6 PF00644 PARP: Poly(ADP-ribose 100.0 2.2E-42 4.8E-47 330.4 12.7 196 245-467 1-206 (206)
7 PF02877 PARP_reg: Poly(ADP-ri 100.0 5.5E-35 1.2E-39 261.4 14.2 132 110-243 1-133 (133)
8 cd01438 tankyrase_like Tankyra 100.0 1.7E-34 3.8E-39 276.0 17.0 180 244-467 13-220 (223)
9 cd01439 TCCD_inducible_PARP_li 99.9 1.2E-26 2.6E-31 204.4 9.6 112 332-465 1-121 (121)
10 cd08003 WGR_PARP2_like WGR dom 99.9 2.2E-26 4.8E-31 196.6 10.8 85 1-86 6-103 (103)
11 cd08002 WGR_PARP3_like WGR dom 99.9 1.6E-25 3.5E-30 190.5 9.6 83 2-86 6-100 (100)
12 cd08001 WGR_PARP1_like WGR dom 99.9 3.4E-24 7.4E-29 184.0 10.4 85 1-86 7-104 (104)
13 cd07997 WGR_PARP WGR domain of 99.9 8.9E-24 1.9E-28 180.8 10.5 83 3-86 8-102 (102)
14 cd01341 ADP_ribosyl ADP_ribosy 99.9 8.7E-24 1.9E-28 190.1 8.4 120 332-461 1-137 (137)
15 smart00773 WGR Proposed nuclei 99.7 2.2E-17 4.8E-22 136.3 9.0 77 1-80 2-78 (84)
16 PF05406 WGR: WGR domain; Int 99.7 3.2E-17 6.9E-22 134.5 6.4 74 2-80 2-75 (81)
17 cd07994 WGR WGR domain. The WG 99.7 7.1E-17 1.5E-21 129.9 7.9 70 7-80 2-72 (73)
18 cd07996 WGR_MMR_like WGR domai 99.5 3.3E-14 7.1E-19 114.5 7.2 72 7-81 2-73 (74)
19 COG3831 Uncharacterized conser 99.0 3.6E-10 7.7E-15 92.3 5.9 68 5-80 1-68 (85)
20 cd07998 WGR_DNA_ligase WGR dom 98.3 1.6E-06 3.5E-11 70.2 6.7 65 17-83 11-76 (77)
21 PF13151 DUF3990: Protein of u 77.8 1.6 3.4E-05 40.3 2.2 60 331-399 1-60 (154)
22 cd01436 Dipth_tox_like Mono-AD 75.5 3.3 7.2E-05 36.5 3.5 50 334-384 3-52 (147)
23 PF15633 Tox-ART-HYD1: HYD1 si 75.5 1.3 2.9E-05 37.5 1.0 41 333-375 1-41 (96)
24 PRK00819 RNA 2'-phosphotransfe 63.8 3.4 7.5E-05 39.0 1.2 22 331-352 95-116 (179)
25 PF12509 DUF3715: Protein of u 54.2 14 0.0003 34.5 3.4 80 340-424 40-125 (165)
26 PF14164 YqzH: YqzH-like prote 51.7 23 0.0005 27.9 3.7 31 127-157 7-37 (64)
27 PF01885 PTS_2-RNA: RNA 2'-pho 49.6 7.6 0.00017 36.9 1.0 23 330-352 105-127 (186)
28 COG1859 KptA RNA:NAD 2'-phosph 42.3 15 0.00032 35.6 1.7 25 329-353 119-143 (211)
29 KOG4177 Ankyrin [Cell wall/mem 41.4 10 0.00022 45.3 0.5 111 305-424 999-1130(1143)
30 PHA00743 helix-turn-helix prot 35.2 95 0.0021 23.2 4.5 44 112-168 3-46 (51)
31 PTZ00315 2'-phosphotransferase 30.3 22 0.00048 39.6 0.8 22 331-352 477-499 (582)
32 KOG2213 Apoptosis inhibitor 5/ 29.5 79 0.0017 33.6 4.7 51 206-268 254-304 (460)
33 PF00701 DHDPS: Dihydrodipicol 27.9 1.1E+02 0.0023 30.6 5.3 53 112-164 231-288 (289)
34 TIGR02313 HpaI-NOT-DapA 2,4-di 26.4 1.2E+02 0.0025 30.7 5.2 53 112-164 232-289 (294)
35 PRK13754 conjugal transfer fer 23.4 2.8E+02 0.0061 26.4 6.7 97 56-166 70-171 (186)
36 PRK03620 5-dehydro-4-deoxygluc 21.5 2.4E+02 0.0051 28.6 6.4 42 127-168 258-301 (303)
37 PLN02417 dihydrodipicolinate s 21.0 1.8E+02 0.0038 29.1 5.3 52 113-164 221-277 (280)
38 PF08858 IDEAL: IDEAL domain; 20.1 1.2E+02 0.0025 21.1 2.6 26 158-183 12-37 (37)
No 1
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=7.4e-120 Score=971.75 Aligned_cols=442 Identities=70% Similarity=1.141 Sum_probs=412.0
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhh----------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKW---------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f---------- 70 (470)
|+.+|+|||++||+++|+|+||+||||+++.++.|+||+||||||+.||+++..+|+++++|+.+|+++|
T Consensus 173 ~g~iYda~Lnqtdi~~n~NkFY~iQlLe~d~~~~Y~v~~rWGRVG~~Gq~~l~~~~~sle~Ai~~F~kkF~eKTGN~W~~ 252 (643)
T PLN03124 173 GDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSREPAIREFEKKFYDKTKNHWSD 252 (643)
T ss_pred CCeEEEEEEEccccCCCCcceEEEEEEEeCCCCeEEEEEEeCccCCcCcccccCCCCCHHHHHHHHHHHHHHHhCCchhh
Confidence 5689999999999999999999999999988899999999999999999998777999999999999999
Q ss_pred --cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCC
Q 043135 71 --QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGT 148 (470)
Q Consensus 71 --~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~ 148 (470)
+|+++||||.+|++||+.++.+... ........+...|+|+++||+||++|||+++|+++|++++||+.+||||+
T Consensus 253 R~~F~k~pgKY~~ie~dy~~~~~~~~~---~~~~~~~~~~~~skL~~~Vq~Li~lIfd~~~m~~~m~e~~~D~~KmPLGk 329 (643)
T PLN03124 253 RKNFISHPKKYTWLEMDYEDEEESKKD---KPSVSSEDKNKQSKLDPRVAQFISLICDVSMMKQQMMEIGYNARKLPLGK 329 (643)
T ss_pred cccccccCCceeEEEeecccccchhhh---ccchhccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCCcc
Confidence 7999999999999999876543221 11111122334799999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCChHHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhh
Q 043135 149 LSKSTILKGYDVLKRIADVIHLPDRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLE 228 (470)
Q Consensus 149 Ls~~~i~~~~~iL~~i~~~l~~~~~~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~ 228 (470)
||++||.+|++||++|+++|++.....+.+|||+||++|||+||++.+++|+||+.++|++|++|||+|.|||+|++|++
T Consensus 330 LSk~qI~kgy~vL~ei~~~l~~~~~~~l~~lSn~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~L~DIevA~~ll~ 409 (643)
T PLN03124 330 LSKSTILKGYEVLKRIAEVISRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEALGEIEIATKLLK 409 (643)
T ss_pred cCHHHHHHHHHHHHHHHHHHcccchHHHHHHhcCeEEecCcccccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888888999999999999999999998888999999999999999999999999999998
Q ss_pred cccccCCCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccce
Q 043135 229 DDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQ 308 (470)
Q Consensus 229 ~~~~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~ 308 (470)
....+..||||++|++|+|+|+||++ + |+|| ++|++|+.+||+++|..|+++|.+
T Consensus 410 ~~~~~~~~pld~~Y~~L~c~i~pLd~---~---S~ef-------------------k~I~~Yl~nT~~~th~~y~l~V~~ 464 (643)
T PLN03124 410 DDIGEQDDPLYAHYKRLNCELEPLDT---D---SEEF-------------------SMIAKYLENTHGQTHSGYTLEIVQ 464 (643)
T ss_pred hccCCCCCcHHHHHHHcCCeeEEcCC---C---CHHH-------------------HHHHHHHHhcCCCccCcCceeEEE
Confidence 87666789999999999999999999 7 9999 999999999999999999999999
Q ss_pred eEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCC
Q 043135 309 IFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAAT 388 (470)
Q Consensus 309 If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~ 388 (470)
||+|+|.+|.+||+.+++.+|++|||||||.+||.+||++||+|+|++++.+|+|||+||||||++|||++||.+..+++
T Consensus 465 If~V~R~~E~~rF~~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~~~ 544 (643)
T PLN03124 465 IFKVSREGEDERFQKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAANP 544 (643)
T ss_pred EEEeccccchhhHHHhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCCCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999987788
Q ss_pred ceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC---------------CcCCCcEEEEee
Q 043135 389 AGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------------GHLLYNEYIVYS 453 (470)
Q Consensus 389 ~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G---------------~~l~~nEyVVYd 453 (470)
.++||||+||||++++++.+++++.++|+|+|||+|+|++.|+|++.+++++| ++|.||||||||
T Consensus 545 ~g~llLceVaLG~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd 624 (643)
T PLN03124 545 DGVLLLCEVALGDMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYN 624 (643)
T ss_pred eeEEEEEEEecCCcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEec
Confidence 99999999999999999999999999999999999999999999887655443 578999999999
Q ss_pred CCceeeeeEEEEEEEcC
Q 043135 454 VDQIRMRYVVQVNFKYK 470 (470)
Q Consensus 454 ~~Qv~~~YLI~~~~~~~ 470 (470)
++||++||||+++|+|+
T Consensus 625 ~~Qvr~rYLv~vkf~~~ 641 (643)
T PLN03124 625 VDQIRMRYVLQVKFNYK 641 (643)
T ss_pred hhHeEEEEEEEEEEeec
Confidence 99999999999999985
No 2
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=1e-113 Score=946.30 Aligned_cols=432 Identities=26% Similarity=0.464 Sum_probs=390.8
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCc--eeecCCCCHHHHHHHHHHhh--------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQD--TIFGPYNLQDTAINEFEQKW-------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~--~~~~~f~s~~~Ai~~F~k~f-------- 70 (470)
|+.+|+|+|++||+++|+|+||+||||+++. +.|+|||||||||+.||. ++ .+|.++++|+.+|+++|
T Consensus 332 ~~~iYd~~Lnqtd~~~n~NkfY~iQlL~~~~-~~y~~~~rWGRVG~~gq~~~~~-~~~~~~~~Ai~~F~kkF~eKTgn~~ 409 (815)
T PLN03122 332 DGILYNCAFSICDLGRGLNEYCIMQLITVPD-SNLHLYYKKGRVGDDPNAEERL-EEWEDVDAAIKEFVRLFEEITGNEF 409 (815)
T ss_pred CCeEeeeeeeeeeccCCCcceEEEEEEEcCC-CcEEEEeeecccCCcCCCcccc-CCCCCHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999876 689999999999998865 44 36899999999999999
Q ss_pred -------cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCC
Q 043135 71 -------QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANK 143 (470)
Q Consensus 71 -------~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~ 143 (470)
+|+++||||.++++|++.+...... ... .......+|+|+++||+||++|||+++|+++|++|+||+.+
T Consensus 410 ~~w~~r~~F~k~pgky~~id~d~~~~~~~~~~---~~~-~~~~~~~~skL~~~Vq~L~~lIfd~~~m~~~m~e~~~D~~k 485 (815)
T PLN03122 410 EPWEREKKFEKKRLKFYPIDMDDGVDVRAGGL---GLR-QLGVAAAHCKLDPKVANFMKVLCSQEIYRYAMMEMGLDSPD 485 (815)
T ss_pred cccccccCccccCCCCceeecccccccccccc---chh-hcccccCCCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCccc
Confidence 5889999999999999876543221 000 01112347999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHhcCCCh------HHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHH-HHHHHH
Q 043135 144 LPLGTLSKSTILKGYDVLKRIADVIHLPDR------RKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLK-LEMVKA 216 (470)
Q Consensus 144 ~Plg~Ls~~~i~~~~~iL~~i~~~l~~~~~------~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k-~~ll~~ 216 (470)
||||+||+.||.+||+||++|+++|.++.. ..+.+|||+|||+|||. +||+|++.+.|+++ ++|||+
T Consensus 486 mPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh~------~ppvi~~~~~lk~k~~~mLe~ 559 (815)
T PLN03122 486 LPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHST------RPFVIRDIDELADHAASALET 559 (815)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCCC------CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999987521 45999999999999992 57899999999999 599999
Q ss_pred HHhHHHHHhhhhccc-ccCCCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhcc
Q 043135 217 LGEIEVATNLLEDDT-QIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTH 295 (470)
Q Consensus 217 L~di~~a~~l~~~~~-~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~ 295 (470)
|.||++|++|++... .+..||||.+|++|+|+|+||++ + |+|| ++|++|+.+||
T Consensus 560 L~DIeiA~~ll~~~~~~~~~~pLd~~Y~~L~~~i~pLd~---~---S~ey-------------------k~I~~Yl~nT~ 614 (815)
T PLN03122 560 VRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDK---E---SDDY-------------------KMIVKYLEKTY 614 (815)
T ss_pred HHHHHHHHHHHhhccccccCCchHHHHHhcCceEEEcCC---C---CHHH-------------------HHHHHHHHhcC
Confidence 999999999997754 35679999999999999999999 8 9999 99999999999
Q ss_pred CCCC---CCcccccceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccc
Q 043135 296 AKTH---SSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFAD 372 (470)
Q Consensus 296 ~~~~---~~~~~~I~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad 372 (470)
+++| ..|+++|.+||+|+|.++ +||..+++++|++|||||||.+||.|||++||||+||++|++|||||+||||||
T Consensus 615 ~~th~~~~~y~l~v~~IF~veR~ge-~rf~~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD 693 (815)
T PLN03122 615 EPVKVGDVSYSVSVENIFAVESSAG-PSLDEIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSD 693 (815)
T ss_pred CCccccCcccceeEeEEEEeccCcc-ccchhhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecc
Confidence 9999 578999999999999996 799999899999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCceEEEEEEEeeCCc-eecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC----------
Q 043135 373 MFSNSADYCNASPAATAGVLLLCEVALGDM-SELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------- 441 (470)
Q Consensus 373 ~~skS~~Y~~~~~~~~~~~mlLceValG~~-~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G---------- 441 (470)
++|||++||.+..+++.++|||||||||++ ++++.+++++..+|+|++||+|+|++.|||.+.+++.||
T Consensus 694 ~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~ 773 (815)
T PLN03122 694 AAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIP 773 (815)
T ss_pred hhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCcc
Confidence 999999999998888999999999999998 799988888889999999999999999999877655443
Q ss_pred -----CcCCCcEEEEeeCCceeeeeEEEEEEEcC
Q 043135 442 -----GHLLYNEYIVYSVDQIRMRYVVQVNFKYK 470 (470)
Q Consensus 442 -----~~l~~nEyVVYd~~Qv~~~YLI~~~~~~~ 470 (470)
++|.||||||||++||++||||+++|+|+
T Consensus 774 ~~~~~~~L~yNEYIVYDvaQvrirYL~~vkf~~~ 807 (815)
T PLN03122 774 SEHKDSPLEYNEYAVYDPKQVSIRFLVGVKYEEK 807 (815)
T ss_pred CCCCCcccccCceEEEchhHEEEEEEEEEEeecc
Confidence 47999999999999999999999999985
No 3
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=8.4e-111 Score=939.71 Aligned_cols=426 Identities=42% Similarity=0.765 Sum_probs=393.0
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccC--CCceeecCCCCHHHHHHHHHHhh--------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVK--GQDTIFGPYNLQDTAINEFEQKW-------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~--G~~~~~~~f~s~~~Ai~~F~k~f-------- 70 (470)
|+.+|+|+|++||+++|+|+||+||||+++.++.|+|||||||||+. |+.++. +| ++++|+.+|+++|
T Consensus 516 ~g~iY~~~Ln~td~~~n~NkfY~iQLL~~~~~~~y~v~~rWGRVG~~~ig~~~l~-~~-~~~~A~~~F~kkF~eKTgn~W 593 (981)
T PLN03123 516 GKSIYNTTLNMSDLSTGVNSYYILQIIEEDKGSDCYVFRKWGRVGNEKIGGNKLE-EM-SKSDAIHEFKRLFLEKTGNPW 593 (981)
T ss_pred CCeEeeeeEecccccCCCcceEEEEEEEeCCCCeEEEEEEecccCCcccCccccC-CC-CHHHHHHHHHHHHHHHhcCcc
Confidence 56899999999999999999999999999888999999999999984 888875 56 7899999999999
Q ss_pred -------cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCC
Q 043135 71 -------QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANK 143 (470)
Q Consensus 71 -------~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~ 143 (470)
+|+++||||.+|++||+.++.++.. .....+|+|+++||+||++|||+++|+++|++++||+.+
T Consensus 594 ~~~~~r~~F~k~pgKy~~ie~dy~~~~~~~~~---------~~~~~~skL~~~vq~L~klIfd~~~m~~~m~e~~~D~~k 664 (981)
T PLN03123 594 ESWEQKTNFQKQPGKFYPLDIDYGVNEQPKKK---------AASGSKSNLAPRLVELMKMLFDVETYRAAMMEFEINMSE 664 (981)
T ss_pred cchhhcccccccCCceeEEEeecCcccchhhh---------cccCCcCCCCHHHHHHHHHHhCHHHHHHHHHHccCCccc
Confidence 5789999999999999876543321 012346999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHhcCCCh------HHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 043135 144 LPLGTLSKSTILKGYDVLKRIADVIHLPDR------RKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKAL 217 (470)
Q Consensus 144 ~Plg~Ls~~~i~~~~~iL~~i~~~l~~~~~------~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L 217 (470)
||||+||++||.+|++||++|+++|++... ..+.+|||+|||+|||. +||+|++.++|+++++|||+|
T Consensus 665 mPLGkLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~l~~lSn~fYtlIPh~------~pp~I~~~~~ik~k~~lLe~L 738 (981)
T PLN03123 665 MPLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFFTLIPSI------HPHIIRDEDDLKSKVKMLEAL 738 (981)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhccEecCCCC------CCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999976532 56999999999999996 368999999999999999999
Q ss_pred HhHHHHHhhhhcccccCCCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCC
Q 043135 218 GEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAK 297 (470)
Q Consensus 218 ~di~~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~ 297 (470)
.|||+|++|++... +..||||++|++|+|+|+||++ + |+|| ++|++|+.+||++
T Consensus 739 ~dieiA~~ll~~~~-~~~~pld~~Y~~L~~~i~~L~~---~---s~ey-------------------~~I~~Yl~nT~~~ 792 (981)
T PLN03123 739 QDIEIASRLVGFDV-DEDDSLDDKYKKLHCDISPLPH---D---SEDY-------------------KLIEKYLLTTHAP 792 (981)
T ss_pred HHHHHHHHHHhccC-cCCCchHHHHHhcCCeEEECCC---C---CHHH-------------------HHHHHHHHhcCCC
Confidence 99999999998653 5689999999999999999999 7 9999 9999999999999
Q ss_pred CCCCcccccceeEEEeechHhHHHHhhc-cCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccc
Q 043135 298 THSSYSVDIVQIFRVEREGETERFKKLS-NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSN 376 (470)
Q Consensus 298 ~~~~~~~~I~~If~V~r~~e~~~F~~~~-~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~sk 376 (470)
+|..|+++|.+||+|+|.+|.+||..|+ .++|++|||||||.+||.+||++||+|+|+++|.+|+|||+||||||++||
T Consensus 793 th~~y~l~v~~IF~v~r~gE~~rf~~~~~~~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~SK 872 (981)
T PLN03123 793 THTDWSLELEEVFSLEREGEFDKYAPYKEKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSK 872 (981)
T ss_pred ccccccceeeEEEEecccccccchhhHhhcCCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEecchhhh
Confidence 9999999999999999999999999986 689999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC---------------
Q 043135 377 SADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG--------------- 441 (470)
Q Consensus 377 S~~Y~~~~~~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G--------------- 441 (470)
|++||.+..+++.++|||||||||++++++.+++ +.+||+|+|||+|+|++.|+|++.+++.||
T Consensus 873 SanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~~~~~~ 951 (981)
T PLN03123 873 SAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKA 951 (981)
T ss_pred hhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCCCCceeeeecCCCCCCcccceecCCceEeeCCCCccCcccC
Confidence 9999999888899999999999999999998887 588999999999999999999877665443
Q ss_pred CcCCCcEEEEeeCCceeeeeEEEEEEEcC
Q 043135 442 GHLLYNEYIVYSVDQIRMRYVVQVNFKYK 470 (470)
Q Consensus 442 ~~l~~nEyVVYd~~Qv~~~YLI~~~~~~~ 470 (470)
+.|.||||||||++||++||||+++|+|+
T Consensus 952 ~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~ 980 (981)
T PLN03123 952 SELMYNEYIVYNTAQVKLQFLLKVRFKHK 980 (981)
T ss_pred CccccCceEEechhHEEEEEEEEEEeecc
Confidence 57899999999999999999999999986
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=100.00 E-value=2.4e-87 Score=683.03 Aligned_cols=329 Identities=55% Similarity=0.923 Sum_probs=309.7
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCh--HHHHHhhhhccccc
Q 043135 110 NTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDR--RKLEQLSGEFYTVI 187 (470)
Q Consensus 110 ~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~~l~~~~~--~~~~~ls~~fY~lI 187 (470)
+|+|+++||+||++|||+++|+++|+++++|+.+||||+||++||.+|++||.+|++++++... ..+.+|||+||++|
T Consensus 1 ~skL~~~vq~l~~~I~d~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~~l~~ls~~FYtlI 80 (347)
T cd01437 1 KSKLDKPVQELIKLIFDVEMMKKAMTELKIDASKMPLGKLSKNQIQKGYEVLKEIEEALKRGSSQGSQLEELSNEFYTLI 80 (347)
T ss_pred CCCcCHHHHHHHHHHcCHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Confidence 3789999999999999999999999999999999999999999999999999999999988765 78999999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhhcccccCCCchHHHHhccCceeeeecCCcccCCCcccccc
Q 043135 188 PHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQF 267 (470)
Q Consensus 188 Ph~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~ 267 (470)
||+||+++ ||+||+.+.|++|++|||+|.||++|+++++.+..+..||+|++|++|+|+|+||++ + |+||
T Consensus 81 Ph~fg~~~--p~~i~~~~~l~~k~~lle~L~die~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~L~~---~---s~ey-- 150 (347)
T cd01437 81 PHDFGMSK--PPVIDNEELLKAKRELLEALRDIEIASKLLKDDEDDSDDPLDANYEKLKCKIEPLDK---D---SEEY-- 150 (347)
T ss_pred CccccCCC--CCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHcCeeEEECCC---C---ChHH--
Confidence 99999974 689999999999999999999999999999887666789999999999999999999 7 9999
Q ss_pred ccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhh
Q 043135 268 SKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILS 347 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~ 347 (470)
++|++|+.+|++++| .++++|.+||+|+|.+++++|+.+++.+|+++|||||+.+||++||+
T Consensus 151 -----------------~~I~~y~~~t~~~~~-~~~~~V~~If~i~r~~e~~~F~~~~~~~n~~lLwHGsr~~n~~~Il~ 212 (347)
T cd01437 151 -----------------KIIEKYLKNTHAPTT-EYTVEVQEIFRVEREGETDRFKPFKKLGNRKLLWHGSRLTNFVGILS 212 (347)
T ss_pred -----------------HHHHHHHHhcCCCCC-CcceeEEEEEEecCCCchhhhHHhhccCCeEEEEcCCChhhHHHHHh
Confidence 999999999999875 47999999999999999999998888999999999999999999999
Q ss_pred cCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCC
Q 043135 348 QGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQ 427 (470)
Q Consensus 348 ~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~ 427 (470)
+||+++|++++.+|+|||+|||||+++|||++||.+...++.++||||+||||+++++..+++..++||+|||||+|+|+
T Consensus 213 ~Gl~~~~~~~~~~g~mfGkGIYFAd~~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~ 292 (347)
T cd01437 213 QGLRIAPPEAPVTGYMFGKGIYFADMFSKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGK 292 (347)
T ss_pred cCCCcCccccccCCccccceEeecCchHhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCCceeeEeccC
Confidence 99999999899999999999999999999999999877788999999999999999999999988889999999999999
Q ss_pred CCCCCCCCeE------ecC----------CCcCCCcEEEEeeCCceeeeeEEEEE
Q 043135 428 TAPDPLEAET------LED----------GGHLLYNEYIVYSVDQIRMRYVVQVN 466 (470)
Q Consensus 428 ~~p~~~~~~~------~~~----------G~~l~~nEyVVYd~~Qv~~~YLI~~~ 466 (470)
+.|+|++..+ +|. |++|.||||||||++||+|||||+|+
T Consensus 293 ~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~~Qir~rYLv~vk 347 (347)
T cd01437 293 TAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYDVAQVRLKYLLEVK 347 (347)
T ss_pred CCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeechhHEEEEEEEEeC
Confidence 9999987643 333 35689999999999999999999985
No 5
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-58 Score=487.22 Aligned_cols=426 Identities=39% Similarity=0.601 Sum_probs=370.2
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhh----------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKW---------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f---------- 70 (470)
|..+|...|+++++..++|+||.+|.++.+....+..|.+||||+..|+..+.....+...|...|..++
T Consensus 66 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (531)
T KOG1037|consen 66 GPEVKVPGLNQTNVENENNKEYTEEELEWDEQQKKRKTVEEGGVTGKGQSGIVKKSKSLDKAKKPFEIKSYKLTKNGMET 145 (531)
T ss_pred cccccccccccccccccccchhhhhhhhcccccceeeeeeecccccccccccchhhhhhhhccchhhhhcchhhhhhhhh
Confidence 3568889999999999999999999999887768899999999999998877666678889999999998
Q ss_pred --cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCC-CCCCC
Q 043135 71 --QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNAN-KLPLG 147 (470)
Q Consensus 71 --~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~-~~Plg 147 (470)
.|...+++|.+.+..... +.+.-....++....|+..|++++..||++++|..++.++++|.. ++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ld~~~~~~~~~i~~~~~m~~~~~~~~~~~~l~~p~g 216 (531)
T KOG1037|consen 146 RDEFIPLGHSYEEEDKKNFS---------KCRSCFSPIKTDSGRLDMSVKELIKNIFDVEEMIKALMEMQLDHKLKKPLG 216 (531)
T ss_pred hhhhhcccchhHHHhhhhhc---------ccccccChhhcccccccccccccccccccHHHHHHHHHhhccchhhhCCCC
Confidence 366777788222111110 111111112333445999999999999999999999999999999 99999
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCh-HHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhh
Q 043135 148 TLSKSTILKGYDVLKRIADVIHLPDR-RKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNL 226 (470)
Q Consensus 148 ~Ls~~~i~~~~~iL~~i~~~l~~~~~-~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l 226 (470)
++|..+|.+++++|.++.+.+..... +.+.+++++||++|||+|++..+ ++ .+.++|++|.+|++|+.+
T Consensus 217 ~~s~~~i~~~~~~~~~~k~~~~~~~~~~~l~~~~~~f~~~ip~~~~~~~~--~~--------~~~~~le~~~~i~~a~~~ 286 (531)
T KOG1037|consen 217 KLSLNDINKAYELLLKVKEALKLGKIGEQLAKASTEFYTLIPHDFGMRKP--PN--------EKQEALEALLDIELAYGL 286 (531)
T ss_pred ccchhhhhhhhhhhhhhhcccccCCcHHHHHHHhhhhhhhcCCCCCcCCC--ch--------hhHHHHHHhhhhhhhhhh
Confidence 99999999999999999999987754 55999999999999999998653 22 788999999999999999
Q ss_pred hhcccc-cC-CCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCccc
Q 043135 227 LEDDTQ-IQ-ADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSV 304 (470)
Q Consensus 227 ~~~~~~-~~-~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~ 304 (470)
...... .. .+|++.+|+.|+|.+.+++. . ++|| ++|.+|+.+++.++|..+.+
T Consensus 287 ~~~~~~~~~~~~Pl~~~y~~l~c~~~~~~~---~---~~e~-------------------kmi~~~~~~~~~~~~~~~~~ 341 (531)
T KOG1037|consen 287 RKGDDVDATCDDPLDKHYKDLKCKIEKLDK---D---SEEF-------------------KMIAQYVEKTHAKTSTVKVV 341 (531)
T ss_pred hhccccccCCCChhhhHHHhhhhhhccccc---c---chhH-------------------HHHHHHHHhhccccCccCce
Confidence 887665 34 78999999999999999998 6 8999 99999999999999887888
Q ss_pred ccceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCC
Q 043135 305 DIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNAS 384 (470)
Q Consensus 305 ~I~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~ 384 (470)
++.+|+++.+..+..+|.......|+++|||||+..|+.+|+..|+++++++++.+|+|||+|||||+++++|++||.+.
T Consensus 342 ~~~~l~k~~~~~e~~~~~~~~~~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y~~~~ 421 (531)
T KOG1037|consen 342 QIADLKKVNEKNEADRKVDISELINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAASKSANYCVTM 421 (531)
T ss_pred eehhHHHhhhcccccccccCcccccccchhcccceeeeeccccCCceecCCCCCceeeccccceEeeeeccccccccccc
Confidence 89999999999999999877788999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC-----------------CcCCCc
Q 043135 385 PAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG-----------------GHLLYN 447 (470)
Q Consensus 385 ~~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G-----------------~~l~~n 447 (470)
...+.+++|+|+|++|+........+..+.+|+|+||++|+|++.|+++.....+++ ..+.|+
T Consensus 422 ~~k~~~~ll~~~~alg~~~~~~~~~~~~~~~~~~~~sv~~~g~~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~ 501 (531)
T KOG1037|consen 422 KGKPTGHLLLCDVALGKEQDLVESIPSLTELPAGKDSVKGVGKTAPDSTLSEDLEDDVDVPLGKIKLTEEPHKDSLLEYN 501 (531)
T ss_pred ccCchhhhhhhhhhccchhhhhcCCcccccCCCCCcchhhhcccCCCchhhcccccccccccccccccccccchhhhhhh
Confidence 778899999999999999999888887777999999999999999999876554432 245699
Q ss_pred EEEEeeCCceeeeeEEEEEEEcC
Q 043135 448 EYIVYSVDQIRMRYVVQVNFKYK 470 (470)
Q Consensus 448 EyVVYd~~Qv~~~YLI~~~~~~~ 470 (470)
||+||+.+|++++|+++++++|.
T Consensus 502 e~~v~~~~q~~~~~~~kv~~~~~ 524 (531)
T KOG1037|consen 502 EYIVYNVEQVQIRYLVKVKMDYS 524 (531)
T ss_pred hhhhccHhhhceeeeeEeehhhh
Confidence 99999999999999999998873
No 6
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=2.2e-42 Score=330.41 Aligned_cols=196 Identities=38% Similarity=0.614 Sum_probs=172.1
Q ss_pred cCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhh
Q 043135 245 LHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKL 324 (470)
Q Consensus 245 L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~ 324 (470)
|+|+|+||++ + |+|| +.|++++.++..+.+. ++++|.+||+|+++.++++|..+
T Consensus 1 L~~~l~~l~~---~---s~ey-------------------~~I~~~f~~~~~~~~~-~~~~I~~I~~i~~~~~~~~f~~~ 54 (206)
T PF00644_consen 1 LNCELVPLEP---D---SEEY-------------------KEIEKYFKKTWKPVHK-YKPKIKKIFRIQNPSLWERFEEK 54 (206)
T ss_dssp TTEEEEEEET---T---SHHH-------------------HHHHHHHHHTSTSTTT-EEEEEEEEEEEEEHHHHHHHHHH
T ss_pred CCCEEEEcCC---C---CHHH-------------------HHHHHHHHhHCCCCCC-CCCEEEEEEEEcChhHHHHHHHH
Confidence 8999999999 7 9999 9999999999876653 58899999999999999999998
Q ss_pred ccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEeeCCcee
Q 043135 325 SNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSE 404 (470)
Q Consensus 325 ~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~~~~ 404 (470)
++.+|+++|||||+.+|+.+|+++||++++..++.+|.+||+|||||+++++|+.||.....++.++||||+|+||++++
T Consensus 55 ~~~~n~~~L~HGt~~~~~~~I~~~G~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~ 134 (206)
T PF00644_consen 55 KKEGNERLLFHGTSAENICSILRNGFKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSDSNGERFMLLCRVALGKPYE 134 (206)
T ss_dssp HHSSSEEEEEEEETGGGHHHHHHHSS---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSESSSSEEEEEEEEEEECSEEE
T ss_pred HhcCCceEEeCCCChhhccchhcCCCccCccccccCCceeeeEEEeCcchhhhcccCCCccCCcceeeeEEEEEecccee
Confidence 78889999999999999999999999987777888999999999999999999999998556789999999999999999
Q ss_pred cccCCCCCCCCCCCCeeeeccCCCCC--------CCCCCeEe--cCCCcCCCcEEEEeeCCceeeeeEEEEEE
Q 043135 405 LLSANSDADKLPDGKLITKGVGQTAP--------DPLEAETL--EDGGHLLYNEYIVYSVDQIRMRYVVQVNF 467 (470)
Q Consensus 405 ~~~~~~~~~~~p~G~dSv~g~g~~~p--------~~~~~~~~--~~G~~l~~nEyVVYd~~Qv~~~YLI~~~~ 467 (470)
+...+. ...+|+|+||+.|.++..| -|...... .++..+.++||||||++|++|+|||+|+|
T Consensus 135 ~~~~~~-~~~~~~g~~sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 135 LKNDNP-MTSPPPGYDSVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYLITYKF 206 (206)
T ss_dssp ESSCCT-GSSGCTTESEEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSGGGEEEEEEEEEEE
T ss_pred eccCcc-cccccCCcceecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEcccceeeEEEEEEEC
Confidence 988887 7899999999999998777 33332211 22355899999999999999999999997
No 7
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=100.00 E-value=5.5e-35 Score=261.45 Aligned_cols=132 Identities=47% Similarity=0.788 Sum_probs=117.1
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHHHHHHhc-CCChHHHHHhhhhcccccc
Q 043135 110 NTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIH-LPDRRKLEQLSGEFYTVIP 188 (470)
Q Consensus 110 ~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~~l~-~~~~~~~~~ls~~fY~lIP 188 (470)
+|+|+++||+||++|||+++|+++|.++++|+.+||||+||++||.+|++||++|+++++ ....+.+.++||+||++||
T Consensus 1 ~skL~~~Vq~Li~~If~~~~~~~~m~e~~~D~~kmPLGkLS~~qI~~g~~iL~~i~~~l~~~~~~~~i~~lsn~fYtlIP 80 (133)
T PF02877_consen 1 KSKLPPEVQDLIKLIFDVEMMKQAMKEMGYDTKKMPLGKLSKEQIEKGYEILKEIEELLKEQERRSKIEDLSNRFYTLIP 80 (133)
T ss_dssp --SSTHHHHHHHHHHT-HHHHHHHHHHTTB-TTTSTGGGB-HHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCchhcCHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHCC
Confidence 489999999999999999999999999999999999999999999999999999999998 4455899999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhhcccccCCCchHHHHh
Q 043135 189 HDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQ 243 (470)
Q Consensus 189 h~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~~~~~~~~~pld~~Y~ 243 (470)
|+||++ +|++|++.+.|+++++||++|.||++|+++++++.....||+|++|+
T Consensus 81 h~fg~~--~~~~I~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~plD~~Y~ 133 (133)
T PF02877_consen 81 HNFGRS--RPPVIDTEEKLKEKLELLEALLDIEIASKLLKDAQDEKINPLDYQYK 133 (133)
T ss_dssp B-STTS---S--STSHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSTHHHHHHH
T ss_pred CcccCC--CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhcC
Confidence 999986 46899999999999999999999999999999887766999999996
No 8
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=1.7e-34 Score=276.00 Aligned_cols=180 Identities=27% Similarity=0.415 Sum_probs=145.1
Q ss_pred ccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCC-------cccccceeEEEeech
Q 043135 244 RLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSS-------YSVDIVQIFRVEREG 316 (470)
Q Consensus 244 ~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~-------~~~~I~~If~V~r~~ 316 (470)
+.++.+..|.| . +.|| +.|+..|+.|..+.+.+ .+++|..|-||++..
T Consensus 13 ~~~~~~~~l~p---~---~~e~-------------------~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RIQN~~ 67 (223)
T cd01438 13 NQGTILLDLAP---D---DKEY-------------------QSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKK 67 (223)
T ss_pred CccceEEEecC---C---CchH-------------------HHHHHHHHhhccccccCcccccccccccEEEEEecCCHH
Confidence 56778888888 6 8899 99999999996543221 267899999999999
Q ss_pred HhHHHHhhc--------cCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCC---
Q 043135 317 ETERFKKLS--------NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASP--- 385 (470)
Q Consensus 317 e~~~F~~~~--------~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~--- 385 (470)
.|++|..-+ +..|+++|||||+..+ +|+++||+.+.+ .+|+|||+|||||+++|||++||.+..
T Consensus 68 Lw~~y~~kk~~~~~~~~~~~ne~~LfHGt~~~~--~I~~~GFd~r~~---~~g~~fGkGiYFA~~askS~~Y~~~~~~~~ 142 (223)
T cd01438 68 LRERYCHRQKEIAEENHNHHNERMLFHGSPFIN--AIIHKGFDERHA---YIGGMFGAGIYFAENSSKSNQYVYGIGGGT 142 (223)
T ss_pred HHHHHHHHHHHHHHhhCCCcceEEEeecCcchh--HHHHhCCCcccc---ccCceeeeeeeeccchhhhccccccccccc
Confidence 999998532 3568999999998766 999999986432 368899999999999999999997521
Q ss_pred ---CCC-------ceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCC
Q 043135 386 ---AAT-------AGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVD 455 (470)
Q Consensus 386 ---~~~-------~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~ 455 (470)
.++ .+.||||+|+||++.....+. ....+|+|||||+|. |. .+.+.++|||||+.+
T Consensus 143 ~~p~~~~~~~~~~~~~MfLcrVlLGk~~~~~~~~-~~~~~P~G~dSv~g~----Ps---------~~~~~~~EfVVyd~~ 208 (223)
T cd01438 143 GCPTHKDRSCYVCHRQMLFCRVTLGKSFLQFSAM-KMAHAPPGHHSVIGR----PS---------VNGLAYAEYVIYRGE 208 (223)
T ss_pred cCcccccccccccceeEEEEEEEecceeeccCCc-ccCCCCCCCcceEcC----CC---------CCCcccCEEEEECCC
Confidence 111 478999999999998776555 346789999999983 21 124568999999999
Q ss_pred ceeeeeEEEEEE
Q 043135 456 QIRMRYVVQVNF 467 (470)
Q Consensus 456 Qv~~~YLI~~~~ 467 (470)
|++|+|||+|+.
T Consensus 209 Q~YPeYLI~y~~ 220 (223)
T cd01438 209 QAYPEYLITYQI 220 (223)
T ss_pred cEeeEEEEEEEe
Confidence 999999999974
No 9
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.94 E-value=1.2e-26 Score=204.40 Aligned_cols=112 Identities=26% Similarity=0.343 Sum_probs=93.3
Q ss_pred EeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCC-CCCceEEEEEEEeeCCceecccCCC
Q 043135 332 LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASP-AATAGVLLLCEVALGDMSELLSANS 410 (470)
Q Consensus 332 lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~-~~~~~~mlLceValG~~~~~~~~~~ 410 (470)
+|||||+.+++..|+++||++++.. .+|.|||+|||||+++++|++||.... ..+.+.||||+|++|+.. ..+.
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g--~~~~~~G~GiYFA~~~s~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~---~~~~ 75 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCG--KHGTMYGKGSYFAKNASYSHQYSKKSPKADGLKEMFLARVLTGDYT---QGHP 75 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCC--CCCCccCCeeecccChhhhhcccccCcCCCCcEEEEEEEEEeccee---cCCC
Confidence 6999999999999999999998653 358899999999999999999998653 247899999999999963 3344
Q ss_pred CCCCCC--------CCCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCceeeeeEEEE
Q 043135 411 DADKLP--------DGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQV 465 (470)
Q Consensus 411 ~~~~~p--------~G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~ 465 (470)
+...|| .+|||+++-- .+.++||||+.+|++|+|||++
T Consensus 76 ~~~~pP~~~~~~~~~~yDS~vd~~-----------------~~p~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 76 GYRRPPLKPSGVELDRYDSCVDNV-----------------SNPSIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred cccCCCCccCCCCCCCccceeCCC-----------------CCCCEEEEEeCCccceeEEEEC
Confidence 555665 7899987621 2368999999999999999985
No 10
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-2 and similar proteins. Similar to PARP-1, PARP-2 is ubiquitously expressed and it
Probab=99.94 E-value=2.2e-26 Score=196.63 Aligned_cols=85 Identities=48% Similarity=0.811 Sum_probs=79.2
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCC-HHHHHHHHHHhh---------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNL-QDTAINEFEQKW--------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s-~~~Ai~~F~k~f--------- 70 (470)
|+.+|+|||++||+++|+|+||+||||+.+..+.|+||+||||||+.|++++. +|++ +++|+++|+++|
T Consensus 6 ~~~vy~a~Ln~td~~~n~Nkfy~lQlle~~~~~~y~~~~rWGRVG~~G~~~l~-~~~~~l~~A~~~F~k~F~~KTgn~W~ 84 (103)
T cd08003 6 GDDVYDAMLNQTNIQQNNNKYYIIQLLEDDAEKIYSVWFRWGRVGKKGQSSLV-PCGSDLEQAKSLFEKKFLDKTKNEWE 84 (103)
T ss_pred CCeEEEEEEEecccCCCCcceEEEEEEEeCCCCeEEEEEeEccccccccceec-cCCCCHHHHHHHHHHHHHHHhCCchh
Confidence 56899999999999999999999999999878999999999999999999986 5654 999999999999
Q ss_pred ---cCccCCCCceEEeccc
Q 043135 71 ---QFTSYPKCYTWLERDY 86 (470)
Q Consensus 71 ---~F~k~pgKY~~ve~d~ 86 (470)
+|+++||||.+||+||
T Consensus 85 ~R~~f~k~pgKY~~le~dy 103 (103)
T cd08003 85 DRANFEKVAGKYDLLEMDY 103 (103)
T ss_pred hccCCCCCCCCceEEeecC
Confidence 6999999999999986
No 11
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-3 and similar proteins, including Arabidopsis thaliana PARP-
Probab=99.92 E-value=1.6e-25 Score=190.51 Aligned_cols=83 Identities=53% Similarity=0.916 Sum_probs=77.0
Q ss_pred CCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhh-----------
Q 043135 2 NDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKW----------- 70 (470)
Q Consensus 2 ~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f----------- 70 (470)
..+|+|+|++||++.|+|+||+|||++++ +.|+||++|||||+.||.++..+++++++|+++|+++|
T Consensus 6 ~~~y~~~Ln~t~~~~n~NkfY~lQll~~~--~~y~v~~~WGRVG~~Gq~~~~~~~~~l~~A~~~F~k~F~~KTgn~W~~R 83 (100)
T cd08002 6 DEDYDCMLNQTNIGHNNNKFYVIQLLESG--KEYYVWNRWGRVGEKGQNKLKGPWDSLEGAIKDFEKKFKDKTKNNWEDR 83 (100)
T ss_pred eEEEEEEEEcccccCCCeeEEEEEEEecC--CEEEEEEEECccCCcCcceeccCCCCHHHHHHHHHHHHHHHhCCchhhc
Confidence 35799999999999999999999999986 89999999999999999998765567999999999999
Q ss_pred -cCccCCCCceEEeccc
Q 043135 71 -QFTSYPKCYTWLERDY 86 (470)
Q Consensus 71 -~F~k~pgKY~~ve~d~ 86 (470)
+|+|+||||.+||+||
T Consensus 84 ~~f~k~~gky~~ie~dy 100 (100)
T cd08002 84 ENFVPHPGKYTLIEMDY 100 (100)
T ss_pred cCCCcCCCcceEEEecC
Confidence 6899999999999986
No 12
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=99.91 E-value=3.4e-24 Score=184.02 Aligned_cols=85 Identities=33% Similarity=0.646 Sum_probs=79.3
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeeccc-CCCceeecCCCCHHHHHHHHHHhh---------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGV-KGQDTIFGPYNLQDTAINEFEQKW--------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~-~G~~~~~~~f~s~~~Ai~~F~k~f--------- 70 (470)
++.+|+|+|+++|+..|+|+||+||||+++.++.|+||++|||||+ .||.++. +|+++++|+++|+++|
T Consensus 7 ~~~~y~~~L~~~d~~~n~n~fY~lQll~~~~~~~y~~~~~WGRiG~~~Gq~~~~-~~~~~~~A~~~F~k~f~~KTgn~w~ 85 (104)
T cd08001 7 GGNLYSAVLGLVDIQTGTNSYYKLQLLEHDKGNRYWVFRSWGRVGTTIGGNKLE-EFSSLEEAKMAFEELYEEKTGNDFE 85 (104)
T ss_pred CCcEEEEEEECcccCCCCcceEEEEEEEECCCCEEEEEEEECccCCccCceEcc-CCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 4678999999999999999999999999988899999999999999 5888874 7999999999999999
Q ss_pred ---cCccCCCCceEEeccc
Q 043135 71 ---QFTSYPKCYTWLERDY 86 (470)
Q Consensus 71 ---~F~k~pgKY~~ve~d~ 86 (470)
+|+++||||.+|++|+
T Consensus 86 ~r~~f~k~~~ky~~~~~d~ 104 (104)
T cd08001 86 NRKNFKKKPGKFYPLDIDY 104 (104)
T ss_pred cccCCcccCCcEeEEEecC
Confidence 6999999999999986
No 13
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=99.90 E-value=8.9e-24 Score=180.82 Aligned_cols=83 Identities=47% Similarity=0.875 Sum_probs=78.0
Q ss_pred CceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhh------------
Q 043135 3 DIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKW------------ 70 (470)
Q Consensus 3 ~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f------------ 70 (470)
.+|+|+|+++|++.|+|+||+|||++++.++.|+||++|||||+.||+++. +|+++++|+++|+++|
T Consensus 8 ~~y~~~L~~~d~~~n~n~fy~lql~~~~~~~~y~v~~~WGRVG~~Gq~~~~-~~~~~~~A~~~F~k~f~~Kt~~~w~~r~ 86 (102)
T cd07997 8 TVYDATLNQTDISNNNNKFYKIQILESKGPNTYALFTRWGRVGERGQSQLT-PFGSLESAIKEFEKKFKDKTGNEWENRP 86 (102)
T ss_pred cEEEEEEEeeccCCCCcceEEEEEEEcCCCCeEEEEEEEccCCCcCceeec-CCCCHHHHHHHHHHHHHHHHCCcccccc
Confidence 469999999999999999999999999878999999999999999999874 7899999999999999
Q ss_pred cCccCCCCceEEeccc
Q 043135 71 QFTSYPKCYTWLERDY 86 (470)
Q Consensus 71 ~F~k~pgKY~~ve~d~ 86 (470)
+|+++||||.+|++|+
T Consensus 87 ~f~k~~~ky~~i~~d~ 102 (102)
T cd07997 87 LFKKQPGKYALVELDY 102 (102)
T ss_pred ccccCCCceeEEeecC
Confidence 6999999999999885
No 14
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.89 E-value=8.7e-24 Score=190.15 Aligned_cols=120 Identities=29% Similarity=0.354 Sum_probs=101.5
Q ss_pred EeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCC----------------CCceEEEEE
Q 043135 332 LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPA----------------ATAGVLLLC 395 (470)
Q Consensus 332 lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~----------------~~~~~mlLc 395 (470)
+|||||+..||.+|+++||++++..++.+|.|||+|||||+++++|++||.++.. ...++|++|
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 80 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLTLG 80 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEEEE
Confidence 5899999999999999999999877666899999999999999999999987542 245789999
Q ss_pred EEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeC-Cceeeee
Q 043135 396 EVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSV-DQIRMRY 461 (470)
Q Consensus 396 eValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~-~Qv~~~Y 461 (470)
+|++|+..+.....+...++|+|++|+.+++.+.++ ..+.++|||||+. +|++|||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~~~e~VV~~~~~Qv~~~Y 137 (137)
T cd01341 81 VMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRD----------ALLLPREYIIFEPYSQVSIRY 137 (137)
T ss_pred EeccccccccccccccccCCCCCCeEEEcccccccc----------hhhCCCeEEEecchhhceecC
Confidence 999999877665555556779999999998765432 2457899999999 9999998
No 15
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=99.72 E-value=2.2e-17 Score=136.32 Aligned_cols=77 Identities=43% Similarity=0.777 Sum_probs=66.8
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhhcCccCCCCce
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYT 80 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f~F~k~pgKY~ 80 (470)
+..+|+++|+++|++.|+|+||.|||++++. +.|.||++|||||..|+.++. +|.++++|+++|+++|. .|-.+.|.
T Consensus 2 ~~~~~~~~L~~~d~~~n~nkfy~iql~~~~~-~~~~v~~~wGRiG~~g~~~~~-~~~s~~~A~~~f~k~~~-~Kt~~gy~ 78 (84)
T smart00773 2 GGEIYDVYLNQTDLASNNNKFYRIQLLEDDF-GGYSVWRRWGRIGTNGQTKLE-TFDSLEDAIKEFEKLFK-EKTKNGYE 78 (84)
T ss_pred CCceeEEEEEccccccCCeeEEEEEEEEcCC-CCEEEEEEeeecCCCCceeeE-cCCCHHHHHHHHHHHHH-HHhcCCCc
Confidence 4678999999999999999999999999864 569999999999999999875 79999999999999994 34344453
No 16
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=99.69 E-value=3.2e-17 Score=134.53 Aligned_cols=74 Identities=45% Similarity=0.757 Sum_probs=65.6
Q ss_pred CCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhhcCccCCCCce
Q 043135 2 NDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYT 80 (470)
Q Consensus 2 ~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f~F~k~pgKY~ 80 (470)
+.+|+|+|+++|++.|+|+||.|||++++ .|.|+++|||||+.|+.+++ +|++.++|+++|+++|. .|..++|.
T Consensus 2 ~~~y~~~L~~~d~~~n~~kfY~iql~~~~---~~~v~~~wGRiG~~gq~~~~-~f~s~~eA~~~f~~~~~-~K~~~gy~ 75 (81)
T PF05406_consen 2 GIIYNVYLERTDPEKNSNKFYRIQLLPDL---EWVVFRRWGRIGSKGQTRIK-PFDSEEEAIKEFEKLFK-EKTGKGYE 75 (81)
T ss_dssp TEECEEEEEEEETTTTEEEEEEEEEEEET---TEEEEEEEEETTSSEEEEEE-EESSHHHHHHHHHHHHH-HHHSSTSC
T ss_pred CcEEEEEEEEEecCCCcEEEEEEEEEeCC---CeEEEEEECCCCCcCcEEEE-eCCCHHHHHHHHHHHHH-HHHcCCCc
Confidence 57899999999999999999999999886 39999999999999998875 79999999999999995 44455554
No 17
>cd07994 WGR WGR domain. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs) as well as the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, a small family of bacterial DNA ligases, and various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain occurs in single-domain proteins and in a variety of domain architectures, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=99.69 E-value=7.1e-17 Score=129.93 Aligned_cols=70 Identities=30% Similarity=0.480 Sum_probs=62.3
Q ss_pred EEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeeccc-CCCceeecCCCCHHHHHHHHHHhhcCccCCCCce
Q 043135 7 ARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGV-KGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYT 80 (470)
Q Consensus 7 ~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~-~G~~~~~~~f~s~~~Ai~~F~k~f~F~k~pgKY~ 80 (470)
++|+.+|. |+||||.|||++++.++.|+||++|||||+ .||++.. +|.++++|+++|+++|. .|..++|.
T Consensus 2 ~~l~~~d~--~~nKFy~iql~~~~~~~~~~v~~~WGRiGt~~Gq~~~~-~~~s~~~A~~~f~kl~~-~Kt~kGY~ 72 (73)
T cd07994 2 ATLGFQDI--GSNKYYKLQLLEDDKENRYWVFRSYGRVGTVIGSTKLE-QMPSKEEAEEHFMKLYE-EKTGKGYY 72 (73)
T ss_pred eEEEEEEC--CCceEEEEEEEeccCCCcEEEEEEECCccCcCCceeeE-cCCCHHHHHHHHHHHHH-HHhcCCCC
Confidence 68999999 999999999999988899999999999999 7999876 68999999999999995 45555563
No 18
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=99.51 E-value=3.3e-14 Score=114.49 Aligned_cols=72 Identities=31% Similarity=0.490 Sum_probs=63.2
Q ss_pred EEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhhcCccCCCCceE
Q 043135 7 ARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTW 81 (470)
Q Consensus 7 ~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f~F~k~pgKY~~ 81 (470)
+.|.++|...|+|+||.|||+++ .++.|.|+++|||||+.|+++.. +|.|.++|+++|++++. .+..++|..
T Consensus 2 ~~l~~~d~~~n~~kfy~i~l~~~-lfg~~~v~~~wGRiG~~Gq~~~~-~~~s~~~A~~~~~k~~~-~K~~~GY~~ 73 (74)
T cd07996 2 TRLERIDPERNSARFYEIELEGD-LFGEWSLVRRWGRIGTKGQSRTK-TFDSEEEALKAAEKLIR-EKLKRGYRE 73 (74)
T ss_pred eEEEEECcccCCCcEEEEEEccc-CCCCEEEEEEECCCCCCCceEEE-ECCCHHHHHHHHHHHHH-HHHhcCCCc
Confidence 57999999999999999999986 46889999999999999998875 69999999999999995 555566653
No 19
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=3.6e-10 Score=92.30 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=60.1
Q ss_pred eEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhhcCccCCCCce
Q 043135 5 YDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYT 80 (470)
Q Consensus 5 y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f~F~k~pgKY~ 80 (470)
|.++|..+|...|++|||.+.+... +|.++|||||+.||++++ .|++.++|.++|.++- ++|...+|.
T Consensus 1 ~~~~l~~~D~~~n~~kFy~~~i~g~------~L~~~wGRiG~~Gq~~~k-~F~~~~~a~~~~~kLi-~~KrkkGY~ 68 (85)
T COG3831 1 YRLYLERIDEKRNMAKFYAVEIEGA------ELTRNWGRIGTKGQSQIK-SFDDSADAEKAALKLI-REKRKKGYV 68 (85)
T ss_pred CeeEEEEecccccccceEEEEEecc------eeEEeecccccCcceeee-eCCCHHHHHHHHHHHH-HHHHhcccc
Confidence 4678999999999999999999833 578999999999999987 5999999999999998 477777776
No 20
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=98.32 E-value=1.6e-06 Score=70.21 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecC-CCCHHHHHHHHHHhhcCccCCCCceEEe
Q 043135 17 NSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGP-YNLQDTAINEFEQKWQFTSYPKCYTWLE 83 (470)
Q Consensus 17 n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~-f~s~~~Ai~~F~k~f~F~k~pgKY~~ve 83 (470)
+.+|||.+-+.+. ..+.|.|-.+|||+|+.||.+..+. |.++++|.++|+|+-+ +|..++|..++
T Consensus 11 ~S~Kfyev~~~~~-~d~g~~v~~~yGR~Gt~gq~~tkt~~~~~~~~A~k~~~Klv~-eK~~KGY~~~~ 76 (77)
T cd07998 11 NSDKVYEVDLFEV-SDDGYVVNFRYGRRGSALREGTKTVAPVTLEAAEKIFDKLVK-SKTNKGYREGE 76 (77)
T ss_pred CCceEEEEEEEec-cCCceEEEEEEccccCCcccccccCCCCCHHHHHHHHHHHHH-HHhcCCceecC
Confidence 7899999999886 3578899999999999999866542 4789999999999996 66668888654
No 21
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=77.80 E-value=1.6 Score=40.29 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=36.3
Q ss_pred eEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEee
Q 043135 331 MLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVAL 399 (470)
Q Consensus 331 ~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceVal 399 (470)
+.|||||... + .+.++. ......-||+|-|.++....|..++......+.+++..-++-.
T Consensus 1 M~LYHGS~~~-i-----~~pd~~---~~r~~~DFG~GFY~T~~~~qA~~wA~~~~~~~~~~v~~Y~~~~ 60 (154)
T PF13151_consen 1 MILYHGSNQI-I-----EKPDLS---KGRPNLDFGKGFYLTTDKEQAKRWAKRKRNGGDPIVNVYEFDE 60 (154)
T ss_pred CEeecCCCcc-c-----cCceec---cCcccCccCceeEcccCHHHHHHHHHhcccCCCCEEEEEEEec
Confidence 5799998642 1 122222 1223345999999999999998888654223444554444443
No 22
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=75.51 E-value=3.3 Score=36.53 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=37.3
Q ss_pred eCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCC
Q 043135 334 WHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNAS 384 (470)
Q Consensus 334 ~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~ 384 (470)
||||......+|.. |++.++....-+--.--+|.|.|++...|++|+...
T Consensus 3 YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W~GfY~a~~~~~A~GYa~d~ 52 (147)
T cd01436 3 YHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDN 52 (147)
T ss_pred ccccchHHHHHHHh-hccCCCCCCCcchhhhhcceeecCCHhhhcceeecc
Confidence 89999999999998 887654322111112347999999999999999764
No 23
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=75.45 E-value=1.3 Score=37.54 Aligned_cols=41 Identities=32% Similarity=0.643 Sum_probs=31.0
Q ss_pred eeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeecccccc
Q 043135 333 LWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFS 375 (470)
Q Consensus 333 L~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~s 375 (470)
|+|=|+..++.+|+.+|--......|.. +||.|.||++.+-
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~--~~~~g~y~t~~ap 41 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD--RFGQGQYFTDIAP 41 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc--cCCCceEEEecCC
Confidence 6899999999999999865433333434 6999999998653
No 24
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=63.76 E-value=3.4 Score=39.04 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.3
Q ss_pred eEeeCCCCCcCHHHHhhcCCCC
Q 043135 331 MLLWHGSRLTNWTGILSQGLRI 352 (470)
Q Consensus 331 ~lL~HGT~~~n~~~Il~~Gl~i 352 (470)
..|||||...+|.+|++.||+.
T Consensus 95 ~~lyHGT~~~~~~~I~~~GL~p 116 (179)
T PRK00819 95 AVLYHGTSSEELDSILEEGLKP 116 (179)
T ss_pred ceeEeCCCHHHHHHHHHhCCCc
Confidence 5899999999999999999874
No 25
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length.
Probab=54.20 E-value=14 Score=34.50 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=53.1
Q ss_pred cCHHHHhhcCCCCCCCCCCCcceeeee---eeeccccccccccccCCCCCCCceEEEEEEEeeCCceecccCC---CCCC
Q 043135 340 TNWTGILSQGLRIAPPEAPATGYMFGK---GVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSAN---SDAD 413 (470)
Q Consensus 340 ~n~~~Il~~Gl~i~p~~~~~~G~~fG~---GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~~~~~~~~~---~~~~ 413 (470)
.-..+|..+||.+.- ..+..+|+ |+|+...+.-...+..... ...+.+++.+|.-|++..+.... -...
T Consensus 40 ~~~~~v~~~GL~v~~----~k~~~Lg~ps~gv~~~~~~D~~~~~~~~~~-~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~ 114 (165)
T PF12509_consen 40 SQVTSVCQRGLKVGN----QKGTILGKPSMGVYLSRHSDLLESQPFICS-SANGEIIIFKVLKGKVKKISDSNGSTQSFL 114 (165)
T ss_pred hhhHHHHhccccccc----ccccccCCCCCCcccccCCchhhcchhhhc-CCCCceeEEeeccCcccccccccccccccC
Confidence 344577899999742 23446887 9999876655554433221 25678999999999998775544 2234
Q ss_pred CCCCCCeeeec
Q 043135 414 KLPDGKLITKG 424 (470)
Q Consensus 414 ~~p~G~dSv~g 424 (470)
.|-++||+..+
T Consensus 115 ~p~p~~d~h~~ 125 (165)
T PF12509_consen 115 DPTPSYDCHVS 125 (165)
T ss_pred CCcccHHHHhh
Confidence 45678888764
No 26
>PF14164 YqzH: YqzH-like protein
Probab=51.71 E-value=23 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCCccHHHHHHH
Q 043135 127 ISMMKQVMMEIGYNANKLPLGTLSKSTILKG 157 (470)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~ 157 (470)
.+++.++|++.|+|...+||+.-..+.|.+.
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 4788899999999999999877666665543
No 27
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=49.63 E-value=7.6 Score=36.87 Aligned_cols=23 Identities=35% Similarity=0.765 Sum_probs=16.3
Q ss_pred ceEeeCCCCCcCHHHHhhcCCCC
Q 043135 330 RMLLWHGSRLTNWTGILSQGLRI 352 (470)
Q Consensus 330 ~~lL~HGT~~~n~~~Il~~Gl~i 352 (470)
-..|+|||...+|..|+.+||+.
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~ 127 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKP 127 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B--
T ss_pred CCEEEEccchhhHHHHHHhCCCC
Confidence 36999999999999999999773
No 28
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=42.30 E-value=15 Score=35.61 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred CceEeeCCCCCcCHHHHhhcCCCCC
Q 043135 329 NRMLLWHGSRLTNWTGILSQGLRIA 353 (470)
Q Consensus 329 N~~lL~HGT~~~n~~~Il~~Gl~i~ 353 (470)
.-..|+|||...++.+|+++|++..
T Consensus 119 ~p~~LyhGTs~~~l~~I~~~Gi~Pm 143 (211)
T COG1859 119 PPAVLYHGTSPEFLPSILEEGLKPM 143 (211)
T ss_pred CCcEEEecCChhhhHHHHHhcCccc
Confidence 4468999999999999999998743
No 29
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=41.43 E-value=10 Score=45.27 Aligned_cols=111 Identities=11% Similarity=0.130 Sum_probs=74.2
Q ss_pred ccceeEEEeechHhHHHHh----hcc----CCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccc
Q 043135 305 DIVQIFRVEREGETERFKK----LSN----SKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSN 376 (470)
Q Consensus 305 ~I~~If~V~r~~e~~~F~~----~~~----~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~sk 376 (470)
.+..+|.+.....++++.- |.. ..++..+||++...+ .+...||..+- .. .+.+||.|+||+.++++
T Consensus 999 ~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~--~~-~~~~~~~~~~f~~~~~~ 1073 (1143)
T KOG4177|consen 999 VSARFWLVDCRKTREAVTHATQLYNELIFVYMAKFVVFAKSNFPN--EGRLRCFCMTD--DK-VDKTLEQQEYFAEVARS 1073 (1143)
T ss_pred hhhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccCCcch--hhccccccccC--Cc-cCcchhhHHHHHHhhhh
Confidence 4556777776666655431 111 347789999998877 66677888642 33 34589999999999999
Q ss_pred cccccCCCCC-------------CCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeec
Q 043135 377 SADYCNASPA-------------ATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKG 424 (470)
Q Consensus 377 S~~Y~~~~~~-------------~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g 424 (470)
+..|...... -....+..|.|.+|+..-..... .+ ++|.+|+.+
T Consensus 1074 ~d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~~l~~~~~---~~-~~g~~~~~~ 1130 (1143)
T KOG4177|consen 1074 RDIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLENRLAFSVK---KR-HAGRISFMA 1130 (1143)
T ss_pred hhhhhhccccceecccCccccceeccceeEEeeehhhhhhhHHHHH---hh-cCCcceeec
Confidence 9988764321 12458999999999863322211 22 449999876
No 30
>PHA00743 helix-turn-helix protein
Probab=35.21 E-value=95 Score=23.23 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 043135 112 KLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVI 168 (470)
Q Consensus 112 ~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~~l 168 (470)
.||..+.+|++.|-+++ +| +=+++-.++.|++|.-.-.+|+..|
T Consensus 3 eLD~~iReLLs~iheIK----------ID---~i~~~~~k~kvekAl~Ls~~I~aeL 46 (51)
T PHA00743 3 ELDEDVRELLSIIHEIK----------ID---IITQSYDKEKIEKAIFLSQKIQAEL 46 (51)
T ss_pred hhHHHHHHHHHHHHHHh----------hh---hhcccCCHHHHHHHHHHHHHHHHHH
Confidence 47889999998887654 23 2345566889999998888887654
No 31
>PTZ00315 2'-phosphotransferase; Provisional
Probab=30.27 E-value=22 Score=39.61 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEeeCCCCCcCHHHHhhcC-CCC
Q 043135 331 MLLWHGSRLTNWTGILSQG-LRI 352 (470)
Q Consensus 331 ~lL~HGT~~~n~~~Il~~G-l~i 352 (470)
..|||||...+|.+|++.| |+.
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~ 499 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLST 499 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccc
Confidence 4799999999999999999 874
No 32
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.50 E-value=79 Score=33.64 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhcccccCCCchHHHHhccCceeeeecCCcccCCCccccccc
Q 043135 206 KLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFS 268 (470)
Q Consensus 206 ~l~~k~~ll~~L~di~~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~ 268 (470)
....|+++|.+|++|.--..+.. ...-|..+|+.|+..|.-.+ . .+|+||+
T Consensus 254 ~e~rkL~lLK~lAEMss~ttaq~-----a~q~Lpsi~elLk~yMpa~k----t---~ee~~fs 304 (460)
T KOG2213|consen 254 TEERKLDLLKALAEMSSYTTAQA-----ARQMLPSIVELLKEYMPAPK----T---GEEMQFS 304 (460)
T ss_pred hHHHHHHHHHHHHHhCccchHHH-----HHHHHHHHHHHHHHhcccCC----c---cHHHHHH
Confidence 34678999999998742221111 12346778888887774443 3 6777665
No 33
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.89 E-value=1.1e+02 Score=30.62 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
.|...+..+++.+. .+..+|.+|...|+... ..||..||.++.++-.++|+++
T Consensus 231 ~l~~~l~~~~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 288 (289)
T PF00701_consen 231 ELQQRLLPLREALFSGGNIAAIKYALELRGLIAGPVRPPLLPLSDEEKEELKEILKEA 288 (289)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHTTSSSSB--TTS-SS-HHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHccCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 45566666677664 67889999999998765 8999999999988888888764
No 34
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=26.45 E-value=1.2e+02 Score=30.75 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..++..++ +...+|.+|..+|++.. .+||..|+.++..+-.++|+++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 289 (294)
T TIGR02313 232 DLHFELLEANDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKY 289 (294)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 35555666666443 45668999998898654 9999999999988888888775
No 35
>PRK13754 conjugal transfer fertility inhibition protein FinO; Provisional
Probab=23.36 E-value=2.8e+02 Score=26.38 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHhh--cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCc-HHHHHHHHHHcCHHHHHH
Q 043135 56 YNLQDTAINEFEQKW--QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLE-PRVAKFLSLICNISMMKQ 132 (470)
Q Consensus 56 f~s~~~Ai~~F~k~f--~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~-~~v~~l~~~i~~~~~~~~ 132 (470)
+.+.++||+.....| =|.. |...++.+.-..+- -.+. .. . ...++ ..+..-++......-+..
T Consensus 70 l~~~keaI~~Lae~wP~lF~~--g~~kPLKIGI~eDL-~qDi-~~-r---------~~~lSk~~LR~ALr~yT~S~rYL~ 135 (186)
T PRK13754 70 LPPLDEAVNTLKPWWPGLFDG--DTPRLLACGIREVL-LEDV-AQ-R---------NIPLSHKKLRRALKAITRSESYLC 135 (186)
T ss_pred cCCHHHHHHHHHHhhHHhcCC--CCCCccccCcHHHH-HHHH-Hh-c---------cCCCCHHHHHHHHHHHhCCHHHHH
Confidence 577888888888888 2433 33444433221100 0000 00 0 01111 234455666666666666
Q ss_pred HHHH--hccCCCCCCCCCccHHHHHHHHHHHHHHHH
Q 043135 133 VMME--IGYNANKLPLGTLSKSTILKGYDVLKRIAD 166 (470)
Q Consensus 133 ~~~~--~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~ 166 (470)
+|+. .-||...-|-|.++.++..-|.+-|.++..
T Consensus 136 avk~Ga~R~DLdG~pvGeVT~Ee~~hA~~rL~E~~k 171 (186)
T PRK13754 136 AMKAGACRYDTEGYVTEHISQEEEAYAAERLDKIRR 171 (186)
T ss_pred HHHcCCeeeCCCCCCccccCHHHHHHHHHHHHHHHH
Confidence 6663 448999999999999999999999998863
No 36
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=21.45 E-value=2.4e+02 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHHHHHh
Q 043135 127 ISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRIADVI 168 (470)
Q Consensus 127 ~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i~~~l 168 (470)
...+|.+|...|++.. ..||..|+.++-.+-.++|+++..-+
T Consensus 258 ~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~~~~ 301 (303)
T PRK03620 258 VSIVKAGARLVGLDAGPVRAPLTDLTPEELAELAALIAKGGAQL 301 (303)
T ss_pred cHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 5668999998898755 99999999999888888888876543
No 37
>PLN02417 dihydrodipicolinate synthase
Probab=21.01 E-value=1.8e+02 Score=29.15 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 113 LEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 113 L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
|...+..+++.++ +...+|.+|..+|++.. ..|+..|+.++..+-.++|+++
T Consensus 221 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 277 (280)
T PLN02417 221 LNDKLLPLMDWLFCEPNPIGLNTALAQLGLIRPVFRLPYVPLDLAKRAEFVALVKAI 277 (280)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4445556666433 34558889998898744 9999999999877777777654
No 38
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=20.08 E-value=1.2e+02 Score=21.15 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHhhhhc
Q 043135 158 YDVLKRIADVIHLPDRRKLEQLSGEF 183 (470)
Q Consensus 158 ~~iL~~i~~~l~~~~~~~~~~ls~~f 183 (470)
..++.+|..+|+..+++...+||+++
T Consensus 12 ~~L~~~ID~ALd~~D~e~F~~Ls~eL 37 (37)
T PF08858_consen 12 EQLLELIDEALDNRDKEWFYELSEEL 37 (37)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 36778899999999999999999864
Done!