Query 043135
Match_columns 470
No_of_seqs 228 out of 997
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 23:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqy_C Poly [ADP-ribose] polym 100.0 3E-111 1E-115 894.7 37.8 433 1-470 33-494 (506)
2 3kjd_A Poly [ADP-ribose] polym 100.0 4.7E-88 1.6E-92 691.0 27.5 332 109-469 19-368 (368)
3 1efy_A Poly (ADP-ribose) polym 100.0 8E-85 2.8E-89 666.9 30.4 333 110-470 1-349 (350)
4 3c4h_A Poly(ADP-ribose) polyme 100.0 2E-80 7E-85 636.2 25.6 324 109-466 6-357 (357)
5 2x5y_A Zinc finger CCCH-type a 100.0 3.1E-38 1E-42 293.2 11.1 169 244-467 2-172 (173)
6 3u9h_A Tankyrase-2; protein-li 100.0 1.6E-36 5.4E-41 295.1 14.3 179 245-467 29-235 (240)
7 2pqf_A Poly [ADP-ribose] polym 100.0 2.9E-36 9.8E-41 285.7 15.2 169 244-467 9-193 (198)
8 3smj_A Poly [ADP-ribose] polym 100.0 4.3E-35 1.5E-39 276.6 15.0 167 246-466 8-192 (193)
9 3blj_A Poly(ADP-ribose) polyme 100.0 4.1E-35 1.4E-39 282.2 14.3 169 244-466 34-220 (221)
10 3hkv_A PARP-10, poly [ADP-ribo 100.0 4.1E-35 1.4E-39 280.9 13.6 174 245-468 9-200 (217)
11 2eoc_A Poly [ADP-ribose] polym 99.9 1.8E-24 6.1E-29 190.0 9.8 80 5-86 33-124 (124)
12 4f0d_A PARP-16, poly [ADP-ribo 99.8 3.9E-20 1.3E-24 181.9 9.9 159 285-466 104-270 (277)
13 2ra8_A Uncharacterized protein 98.0 4.4E-06 1.5E-10 85.4 4.9 62 14-83 8-69 (362)
14 1wfx_A Probable RNA 2'-phospho 64.3 2.6 8.9E-05 38.7 1.8 22 331-352 92-113 (186)
15 2r91_A 2-keto-3-deoxy-(6-phosp 38.8 35 0.0012 32.8 5.3 57 112-168 222-284 (286)
16 2nuw_A 2-keto-3-deoxygluconate 37.9 46 0.0016 32.0 6.0 54 112-165 221-280 (288)
17 1w3i_A EDA, 2-keto-3-deoxy glu 36.8 52 0.0018 31.8 6.2 55 112-166 223-283 (293)
18 2wkj_A N-acetylneuraminate lya 31.6 52 0.0018 32.0 5.2 54 112-165 241-300 (303)
19 3dz1_A Dihydrodipicolinate syn 31.5 47 0.0016 32.5 4.9 56 112-167 243-305 (313)
20 3b4u_A Dihydrodipicolinate syn 31.2 88 0.003 30.1 6.8 55 111-165 228-289 (294)
21 2yxg_A DHDPS, dihydrodipicolin 30.0 58 0.002 31.3 5.3 53 112-164 229-286 (289)
22 3l21_A DHDPS, dihydrodipicolin 30.0 46 0.0016 32.4 4.5 52 113-164 244-300 (304)
23 2rfg_A Dihydrodipicolinate syn 30.0 61 0.0021 31.3 5.4 53 112-164 230-287 (297)
24 3eb2_A Putative dihydrodipicol 28.8 65 0.0022 31.2 5.4 55 112-166 234-293 (300)
25 3d0c_A Dihydrodipicolinate syn 27.8 85 0.0029 30.6 6.0 54 112-165 240-301 (314)
26 2ehh_A DHDPS, dihydrodipicolin 26.4 44 0.0015 32.3 3.6 53 112-164 231-288 (294)
27 1o5k_A DHDPS, dihydrodipicolin 26.1 64 0.0022 31.4 4.7 53 112-164 246-303 (306)
28 1xky_A Dihydrodipicolinate syn 25.8 53 0.0018 31.8 4.1 52 112-163 242-298 (301)
29 3a5f_A Dihydrodipicolinate syn 25.4 58 0.002 31.3 4.3 53 112-164 231-288 (291)
30 2vc6_A MOSA, dihydrodipicolina 24.3 72 0.0025 30.7 4.7 53 112-164 231-288 (292)
31 1f6k_A N-acetylneuraminate lya 24.1 93 0.0032 29.9 5.5 53 112-164 233-291 (293)
32 2ojp_A DHDPS, dihydrodipicolin 23.5 78 0.0027 30.4 4.8 53 112-164 231-289 (292)
33 4dpp_A DHDPS 2, dihydrodipicol 22.8 1.1E+02 0.0038 30.7 5.9 53 112-164 278-335 (360)
34 3na8_A Putative dihydrodipicol 22.4 1.5E+02 0.0051 28.8 6.7 53 112-164 255-312 (315)
35 3cpr_A Dihydrodipicolinate syn 21.5 81 0.0028 30.5 4.5 52 113-164 245-301 (304)
36 3fkr_A L-2-keto-3-deoxyarabona 21.3 71 0.0024 31.1 4.0 55 113-167 243-303 (309)
No 1
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=100.00 E-value=3.1e-111 Score=894.65 Aligned_cols=433 Identities=41% Similarity=0.732 Sum_probs=383.4
Q ss_pred CCCceEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccC-CCceeecCCCCHHHHHHHHHHhh---------
Q 043135 1 GNDIYDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVK-GQDTIFGPYNLQDTAINEFEQKW--------- 70 (470)
Q Consensus 1 ~~~~y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~-G~~~~~~~f~s~~~Ai~~F~k~f--------- 70 (470)
|+.+|+|+|++||++.|+|+||+|||++++.++.|+|||+|||||+. ||.++. +|+++++|+++|+++|
T Consensus 33 ~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~Gq~~l~-~~~s~~~Ai~~F~k~F~~KTgn~W~ 111 (506)
T 4dqy_C 33 GGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNKLE-QMPSKEDAIEHFMKLYEEKTGNAWH 111 (506)
T ss_dssp TTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSCEEEEEE-CCSCSHHHHHHHHHHHHHHHSSCSS
T ss_pred CCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCcccccceec-cCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 56799999999999999999999999998888899999999999996 888875 7899999999999999
Q ss_pred --cCccCCCCceEEecccCccccccccccCCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCC
Q 043135 71 --QFTSYPKCYTWLERDYSANQTEESVVHEKPDSTINIQPQNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGT 148 (470)
Q Consensus 71 --~F~k~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~ 148 (470)
+|+++||||.+|++|++.++.+... .. ...+.+|+|+++||+||++|||+++|+++|.++++|+.+||||+
T Consensus 112 ~R~f~k~pgKy~~ve~d~~~~~~~~~~----~~---~~~~~~s~L~~~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGk 184 (506)
T 4dqy_C 112 SKNFTKYPKKFYPLEIDYGQDEEAVKK----LT---VNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGK 184 (506)
T ss_dssp CSSCCCCTTCCEEECBC------------------------CCCSCHHHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSC
T ss_pred ccCccccCCccceeecccccchhhhhh----hc---ccCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCChhhCCCcc
Confidence 6999999999999999764333211 11 11234799999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCC-ChHHHHHhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhh
Q 043135 149 LSKSTILKGYDVLKRIADVIHLP-DRRKLEQLSGEFYTVIPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLL 227 (470)
Q Consensus 149 Ls~~~i~~~~~iL~~i~~~l~~~-~~~~~~~ls~~fY~lIPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~ 227 (470)
||++||.+|+++|++|+++|++. ..+.+.+|||+||++|||+||++ +||+|++.++|+++++||++|.|||+|++|+
T Consensus 185 LS~~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~--~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~ 262 (506)
T 4dqy_C 185 LSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMK--KPPLLNNADSVQAKAEMLDNLLDIEVAYSLL 262 (506)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhEeCCccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 45789999999999999999986 4689999999999999999999999999999
Q ss_pred hcccc-cCCCchHHHHhccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCccccc
Q 043135 228 EDDTQ-IQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDI 306 (470)
Q Consensus 228 ~~~~~-~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I 306 (470)
+.+.. ...||+|++|++|+|+|+||++ + |+|| ++|++|+++|++++|..++++|
T Consensus 263 ~~~~~~~~~~pld~~Y~~L~~~l~~L~~---~---s~Ey-------------------~~I~~~~~~T~~~~h~~~~~~I 317 (506)
T 4dqy_C 263 RGGSDDSSKDPIDVNYEKLKTDIKVVDR---D---SEEA-------------------EIIRKYVKNTHATTHNAYDLEV 317 (506)
T ss_dssp SCSCCCTTSCHHHHHHHHTCEEEEECCT---T---CHHH-------------------HHHHHHHHHTCCSSCTTCCCCE
T ss_pred hhhccCCCCCchHHHHHHhCcEEEECCC---C---ChHH-------------------HHHHHHHHhccCcccccCCcee
Confidence 87543 5689999999999999999999 7 9999 9999999999999998889999
Q ss_pred ceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCC
Q 043135 307 VQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPA 386 (470)
Q Consensus 307 ~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~ 386 (470)
++||||+|++++++|+.+++.+|+++|||||+.+|+++||++||+++|+.++.+|+|||+|||||++++||++||.++..
T Consensus 318 ~~I~rI~~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~~Y~~~~~~ 397 (506)
T 4dqy_C 318 IDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQG 397 (506)
T ss_dssp EEEEEEEETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHHTTSCCCSS
T ss_pred EeEEEEccHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccccccCCCCC
Confidence 99999999999999998888999999999999999999999999999988999999999999999999999999998766
Q ss_pred CCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCC---------------CcCCCcEEEE
Q 043135 387 ATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDG---------------GHLLYNEYIV 451 (470)
Q Consensus 387 ~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G---------------~~l~~nEyVV 451 (470)
++.++||||+|+||++++++.+++ +..||+|||||+|+|++.|+|++. +..|| ++|.||||||
T Consensus 398 ~~~~~mll~~V~lG~~~~~~~~~~-~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~~~~l~ynEyiV 475 (506)
T 4dqy_C 398 DPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVNDTSLLYNEYIV 475 (506)
T ss_dssp SCEEEEEEEEEECCSEEEESSCCC-CSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCCCCSCSBCEEEE
T ss_pred CCeEEEEEEEEecCCceecccchh-hhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCCCCcccccceEE
Confidence 789999999999999999988774 689999999999999999999876 33333 6799999999
Q ss_pred eeCCceeeeeEEEEEEEcC
Q 043135 452 YSVDQIRMRYVVQVNFKYK 470 (470)
Q Consensus 452 Yd~~Qv~~~YLI~~~~~~~ 470 (470)
||++||+|||||+|+|+|+
T Consensus 476 Yd~~Qir~rYLv~v~~~~~ 494 (506)
T 4dqy_C 476 YDIAQVNLKYLLKLKFNFK 494 (506)
T ss_dssp SSGGGEEEEEEEEEECCCC
T ss_pred EchHHeeEEEEEEEEEEcc
Confidence 9999999999999999985
No 2
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=100.00 E-value=4.7e-88 Score=690.97 Aligned_cols=332 Identities=49% Similarity=0.847 Sum_probs=308.2
Q ss_pred CCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCC-hHHHHHhhhhccccc
Q 043135 109 QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPD-RRKLEQLSGEFYTVI 187 (470)
Q Consensus 109 ~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~~l~~~~-~~~~~~ls~~fY~lI 187 (470)
.+|+|+++||+||++|||+++|+++|.++++|+.+||||+||++||.+|+++|++|+++|++.+ .+.+.+|||+||++|
T Consensus 19 ~~skL~~~vq~li~lIfd~~~~~~~m~~~~~D~~k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlI 98 (368)
T 3kjd_A 19 YFQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRI 98 (368)
T ss_dssp HHCCCCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHS
T ss_pred ccccCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCccccCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhC
Confidence 3689999999999999999999999999999999999999999999999999999999998765 468999999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhhcccccCCCchHHHHhccCceeeeecCCcccCCCcccccc
Q 043135 188 PHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQADPLYAYYQRLHCQLTPLAGADLASHHSKYFQF 267 (470)
Q Consensus 188 Ph~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~ 267 (470)
||+||++ +||+|++.++|++|++|||+|.||++|++|++.......||+|++|++|+|+|+||++ + |+||
T Consensus 99 Ph~fg~~--~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~~~~~~~~~pld~~Y~~L~~~l~~L~~---~---s~Ey-- 168 (368)
T 3kjd_A 99 PHDFGLR--TPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDH---E---SYEF-- 168 (368)
T ss_dssp CBCCTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC----CCSCHHHHHHHHHTEEEEECCT---T---SHHH--
T ss_pred CccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhcCcEEEEcCC---C---ChHH--
Confidence 9999986 5789999999999999999999999999999876666789999999999999999999 7 9999
Q ss_pred ccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhh
Q 043135 268 SKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILS 347 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~ 347 (470)
++|++|+++|++++|..++++|.+||||+|.+++++|+ ++.+|+++|||||+.+|+++|++
T Consensus 169 -----------------~~I~~y~~~T~~~~h~~~~~~I~~IfrI~r~~e~~~F~--k~~~N~~lLwHGT~~~n~~~Il~ 229 (368)
T 3kjd_A 169 -----------------KVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFR--EDLHNRMLLWHGSRMSNWVGILS 229 (368)
T ss_dssp -----------------HHHHHHHHHTCCTTCTTCEEEEEEEEEEEETTHHHHSC--TTCSCEEEEEEECCGGGHHHHHH
T ss_pred -----------------HHHHHHHHhcCCcccCcCceeEEEEEEecchHHHHHHh--hcCCCceEEEeCCCHHHHHHHHH
Confidence 99999999999999988899999999999999999998 47889999999999999999999
Q ss_pred cCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCC
Q 043135 348 QGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQ 427 (470)
Q Consensus 348 ~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~ 427 (470)
+||+++++.++.+|+|||+|||||++++||++||.++..++.++||||+|+||++++++.+++++.+||+|||||+|+|+
T Consensus 230 ~Gf~~~~~~~~~~g~~fGkGIYFA~~~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~ 309 (368)
T 3kjd_A 230 HGLRIAHPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGK 309 (368)
T ss_dssp HCSCCCCTTSCGGGSTTCSSEEEBSSHHHHHHTTCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEE
T ss_pred cCCCcccccccccCceeeeEEEccccccccccccCCCCCCCeEEEEEEEEecCCceeccccCcccccCCCCCceEEeeCC
Confidence 99999988888899999999999999999999999876678999999999999999999988888999999999999999
Q ss_pred CCCCCCCCeEe-----cCC------------CcCCCcEEEEeeCCceeeeeEEEEEEEc
Q 043135 428 TAPDPLEAETL-----EDG------------GHLLYNEYIVYSVDQIRMRYVVQVNFKY 469 (470)
Q Consensus 428 ~~p~~~~~~~~-----~~G------------~~l~~nEyVVYd~~Qv~~~YLI~~~~~~ 469 (470)
+.|+|++.+++ |.| .+|.||||||||++||+|||||+|+|+|
T Consensus 310 ~~P~~~~~~~~dgv~vP~G~~~~~~~~~~~~~~L~ynEyIVYd~~Qir~rYLv~v~~~~ 368 (368)
T 3kjd_A 310 MAPSSAHFVTLNGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368 (368)
T ss_dssp EEECGGGCEEETTEEECCSCEEECCCCCSSSCCEEECEEEESSGGGEEEEEEEEEEEEC
T ss_pred CcCCcccccccCCEEeeCCCcccCCCCCCcCccccCCceEEechhHeeEEEEEEEEeEC
Confidence 99999875443 222 2589999999999999999999999997
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=100.00 E-value=8e-85 Score=666.87 Aligned_cols=333 Identities=45% Similarity=0.789 Sum_probs=310.1
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCC-hHHHHHhhhhcccccc
Q 043135 110 NTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPD-RRKLEQLSGEFYTVIP 188 (470)
Q Consensus 110 ~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~~l~~~~-~~~~~~ls~~fY~lIP 188 (470)
+|+|+++||+||++|||+++|+++|.++++|+.+||||+||++||.+|+++|++|+++|++.. .+.+.+|||+||++||
T Consensus 1 ~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~~~~~l~~ls~~fyt~IP 80 (350)
T 1efy_A 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIP 80 (350)
T ss_dssp CCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHhhcC
Confidence 489999999999999999999999999999999999999999999999999999999998754 5889999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhhccccc-CCCchHHHHhccCceeeeecCCcccCCCcccccc
Q 043135 189 HDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQI-QADPLYAYYQRLHCQLTPLAGADLASHHSKYFQF 267 (470)
Q Consensus 189 h~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~~~~~~-~~~pld~~Y~~L~~~i~~l~~~~~~~~~s~e~~~ 267 (470)
|+||++ +||+|++.+.|++|++|||+|.||++|+++++.+... ..||+|++|++|+|+|+||++ + |+||
T Consensus 81 h~fg~~--~p~~i~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~~pld~~y~~L~~~l~~L~~---~---s~Ey-- 150 (350)
T 1efy_A 81 HDFGMK--KPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDK---D---SEEA-- 150 (350)
T ss_dssp BCCCSS--CCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCHHHHHHHHTCEEEEECCT---T---SHHH--
T ss_pred ccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHhCCEEEEcCC---C---ChHH--
Confidence 999986 4689999999999999999999999999999876554 379999999999999999999 7 9999
Q ss_pred ccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhhccCCCceEeeCCCCCcCHHHHhh
Q 043135 268 SKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTNWTGILS 347 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~ 347 (470)
++|++|+++|++++|..++++|.+||||+|++++++|..+++.+|+++|||||+.+|+.+|++
T Consensus 151 -----------------~~I~~~~~~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~~~k~~~n~~~L~HGt~~~n~~~Il~ 213 (350)
T 1efy_A 151 -----------------KIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILS 213 (350)
T ss_dssp -----------------HHHHHHHHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGGGGSSCEEEEEEEECGGGHHHHHH
T ss_pred -----------------HHHHHHHhcccCCCCCCCcccccceEEecCHHHHHHHHHhhccCCeeEEEeCCchHHHHHHHH
Confidence 999999999999888778999999999999999999998888999999999999999999999
Q ss_pred cCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCC
Q 043135 348 QGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQ 427 (470)
Q Consensus 348 ~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~ 427 (470)
+||+++|++++.+|+|||+|||||++++||++||.++..++.++||||+|+||++.++..+++ +.+||+|||||+|+|+
T Consensus 214 ~Gf~~~~~~~~~~g~~fG~GiYfa~~~skS~~Y~~~~~~~~~~~m~Lc~V~lG~~~~~~~~~~-~~~~p~g~~Sv~g~g~ 292 (350)
T 1efy_A 214 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGK 292 (350)
T ss_dssp HCSCCCCTTSCGGGSTTSSSEEEBSSHHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCC-CCSCCTTCCEEEECCS
T ss_pred cCCCcccccCCCccCceecccccccchhhhhccccCCCCCCeEEEEEEEEecCCceeccCcch-hhhcCCCCcceeeccc
Confidence 999999888889999999999999999999999998766789999999999999999988888 7899999999999999
Q ss_pred CCCCCCC-----CeEecCC---------CcCCCcEEEEeeCCceeeeeEEEEEEEcC
Q 043135 428 TAPDPLE-----AETLEDG---------GHLLYNEYIVYSVDQIRMRYVVQVNFKYK 470 (470)
Q Consensus 428 ~~p~~~~-----~~~~~~G---------~~l~~nEyVVYd~~Qv~~~YLI~~~~~~~ 470 (470)
+.|||++ .+++|.| +.+.||||||||++||+|+|||+|+|+|+
T Consensus 293 ~~Pd~~~~~~~dgv~vP~G~~~~~~~~~~~l~~~EyVVYd~~Qi~p~YLI~~~~~~~ 349 (350)
T 1efy_A 293 TAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349 (350)
T ss_dssp EEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCGGGEEEEEEEEEEEEEC
T ss_pred cCCCccccccCCCeeeecCcccCCCCCCCCCCCCEEEEEchhheeEEEEEEEEEEec
Confidence 9999875 2223322 56889999999999999999999999996
No 4
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=100.00 E-value=2e-80 Score=636.17 Aligned_cols=324 Identities=35% Similarity=0.597 Sum_probs=296.5
Q ss_pred CCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCh--HHHHHhhhhcccc
Q 043135 109 QNTKLEPRVAKFLSLICNISMMKQVMMEIGYNANKLPLGTLSKSTILKGYDVLKRIADVIHLPDR--RKLEQLSGEFYTV 186 (470)
Q Consensus 109 ~~s~L~~~v~~l~~~i~~~~~~~~~~~~~~~d~~~~Plg~Ls~~~i~~~~~iL~~i~~~l~~~~~--~~~~~ls~~fY~l 186 (470)
.+|+|+++||+||++|||+++|+++|.++++|+.+||||+||++||.+|+++|++|+++|++... ..+.+|||+||++
T Consensus 6 ~~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~~~~~~~~ls~~fyt~ 85 (357)
T 3c4h_A 6 QPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGGQSLEELSSHFYTV 85 (357)
T ss_dssp CCCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 47999999999999999999999999999999999999999999999999999999999987644 3499999999999
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHhhhhcccccC-----CCchHHHHhccCceeeeecCCcccCCC
Q 043135 187 IPHDFGFQKMGDLVIDTPQKLKLKLEMVKALGEIEVATNLLEDDTQIQ-----ADPLYAYYQRLHCQLTPLAGADLASHH 261 (470)
Q Consensus 187 IPh~~g~~~~~~~~i~~~~~l~~k~~ll~~L~di~~a~~l~~~~~~~~-----~~pld~~Y~~L~~~i~~l~~~~~~~~~ 261 (470)
|||+||++ +||+|++.+.|++|++|||+|.||++|++|++.+.... .||+|++|++|+|.|+||++ +
T Consensus 86 IPh~fg~~--~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~~~~~~~~~~~~~~pld~~y~~L~~~l~~L~~---~--- 157 (357)
T 3c4h_A 86 IPHNFGHS--QPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDS---G--- 157 (357)
T ss_dssp SCBCSTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCSEECCHHHHHHHHHCCEEEECCT---T---
T ss_pred cCcccCCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCChhHHHHHHhCCEEEECCC---C---
Confidence 99999986 46799999999999999999999999999998654333 79999999999999999999 7
Q ss_pred ccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhhccCCCceEeeCCCCCcC
Q 043135 262 SKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLSNSKNRMLLWHGSRLTN 341 (470)
Q Consensus 262 s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~~~~~N~~lL~HGT~~~n 341 (470)
|+|| ++|++|+++| +++|. .++|.+||+|+|+.++++|..+++.+|+++|||||+.+|
T Consensus 158 s~Ey-------------------~~I~~~f~~t-~~~~~--~~~I~~I~rV~n~~~~~rF~~~k~~~n~~~LfHGt~~~~ 215 (357)
T 3c4h_A 158 APEY-------------------KVIQTYLEQT-GSNHR--CPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAV 215 (357)
T ss_dssp STTH-------------------HHHHHHHHHH-SCSSS--CCCEEEEEEEECTTSHHHHHTTTTCCCEEEEEEEECHHH
T ss_pred ChHH-------------------HHHHHHHHhc-CCCCC--CccEEEEEEecCHHHHHHHHHHhccCCeEEEEeCCChhh
Confidence 9999 9999999999 77764 289999999999999999999888899999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccC--CCCCCCceEEEEEEEeeCCceecccCCCCCCCCCCCC
Q 043135 342 WTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCN--ASPAATAGVLLLCEVALGDMSELLSANSDADKLPDGK 419 (470)
Q Consensus 342 ~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~--~~~~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~ 419 (470)
+++|+++||+++|+ +|+|||+|||||+++++|++||. ++..++.++||||+|++|++++++.+++++.+||+||
T Consensus 216 ~~~I~~~Gf~~~~~----~g~~fG~GiYfa~~~skS~~Y~~~~~~~~~~~~~mllc~V~lG~~~~~~~~~~~~~~pP~g~ 291 (357)
T 3c4h_A 216 VAAILTSGLRIMPH----SGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGF 291 (357)
T ss_dssp HHHHHHHCSCCCTT----CCCTTCSSEEEBSSHHHHHTTCCCEEETTEEEEEEEEEEEECCSEEEESSCCTTCSSCCTTC
T ss_pred HHHHHHcCCcccCC----CCCceECCEecCCcchhhhhhcccCCCCCCCeEEEEEEEEecCCceeccCCchhccCCCCCC
Confidence 99999999998654 89999999999999999999998 5445678999999999999999999988888999999
Q ss_pred eeeeccCCCCCCCCCC---------eEecCC----------CcCCCcEEEEeeCCceeeeeEEEEE
Q 043135 420 LITKGVGQTAPDPLEA---------ETLEDG----------GHLLYNEYIVYSVDQIRMRYVVQVN 466 (470)
Q Consensus 420 dSv~g~g~~~p~~~~~---------~~~~~G----------~~l~~nEyVVYd~~Qv~~~YLI~~~ 466 (470)
|||+|+|++.|+|++. ++++.| +.+.||||||||++||+|+|||+|+
T Consensus 292 dSv~g~g~~~P~~~~~~~~~~dg~~v~vp~G~~v~~~~~~~~~l~~nEyVVYd~~Qv~p~YLi~~k 357 (357)
T 3c4h_A 292 DSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVH 357 (357)
T ss_dssp SEEEECCSEEECGGGCEEEEETTEEEEECCSCEEECGGGTTCSCSBCEEEESSGGGEEEEEEEEEC
T ss_pred CccceecCCCCCcccceeeccCCCeEEecCCCcccCCCCCCCccCCCEEEEEchhheeEEEEEEEC
Confidence 9999999999999764 333333 5788999999999999999999985
No 5
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=293.22 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=146.0
Q ss_pred ccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHh
Q 043135 244 RLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKK 323 (470)
Q Consensus 244 ~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~ 323 (470)
+++|.|.+|++ + |+|| ++|++++.+|+. +++|.+||||+|+.++++|..
T Consensus 2 ~~~~~l~~L~~---~---s~ey-------------------~~v~~~f~~t~~------~~~I~~I~rv~n~~~~~~f~~ 50 (173)
T 2x5y_A 2 SKKYKLSEIHH---L---HPEY-------------------VRVSEHFKASMK------NFKIEKIKKIENSELLDKFTW 50 (173)
T ss_dssp -CCCEEEECCT---T---SHHH-------------------HHHHHHHHTTCT------TEEEEEEEEEECHHHHHHHHH
T ss_pred CCCeEEEECCC---C---CHHH-------------------HHHHHHHHhHCC------CCEEeEEEEECCHHHHHHHHH
Confidence 47899999999 7 9999 999999999974 578999999999999999998
Q ss_pred hcc--CCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEEEEEeeCC
Q 043135 324 LSN--SKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLLCEVALGD 401 (470)
Q Consensus 324 ~~~--~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlLceValG~ 401 (470)
+++ ..|+++|||||+.+|+++|+++||+.+. ++.+|+|||+|||||+++++|++||.++. +.++||||+|++|+
T Consensus 51 ~k~~~~~n~~~l~HGt~~~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~s~~Y~~~~~--~~~~m~lc~V~~G~ 126 (173)
T 2x5y_A 51 KKSQMKEEGKLLFYATSRAYVESICSNNFDSFL--HETHENKYGKGIYFAKDAIYSHKNCPYDA--KNVVMFVAQVLVGK 126 (173)
T ss_dssp HHHHHTCCCEEEEEEEEGGGHHHHHHHCCCHHH--HCCSCSSSCSSEEEESSHHHHHHHCCSCG--GGEEEEEEEECCCS
T ss_pred HHHHHhhCcEEEEecCCcccHHHHHHhCCCCcc--cCCCcCCccCeEECCCChhhHhhcCCCCC--CCeEEEEEEEecCc
Confidence 764 5799999999999999999999996421 12378899999999999999999998753 56999999999999
Q ss_pred ceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCceeeeeEEEEEE
Q 043135 402 MSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNF 467 (470)
Q Consensus 402 ~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~~~ 467 (470)
.. ..+..+..||+|||||.|.. .+++|||||+++||+|+|||+|+-
T Consensus 127 ~~---~~~~~~~~pp~~ydSv~~~~-----------------~~~~e~VV~~~~q~~P~YlI~y~~ 172 (173)
T 2x5y_A 127 FI---EGNITYTSPPPQFDSCVDTR-----------------SNPSVFVIFQKDQVYPQYVIEYTE 172 (173)
T ss_dssp EE---ECCTTCSSCCTTCCEEESCS-----------------SSCCEEEECCGGGEEEEEEEEEEE
T ss_pred cc---cCCcccCCCCCCCCceECCC-----------------CCCCEEEEEeCCeEeEEEEEEEeC
Confidence 53 34446688999999998741 136899999999999999999974
No 6
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=100.00 E-value=1.6e-36 Score=295.08 Aligned_cols=179 Identities=26% Similarity=0.358 Sum_probs=148.8
Q ss_pred cCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCC-------cccccceeEEEeechH
Q 043135 245 LHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSS-------YSVDIVQIFRVEREGE 317 (470)
Q Consensus 245 L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~-------~~~~I~~If~V~r~~e 317 (470)
.+|.|.+|++ . |+|| ++|+++|.+|+.+.+.. .+++|++|+||+|+.+
T Consensus 29 ~~~~l~~L~~---~---s~Ey-------------------~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l 83 (240)
T 3u9h_A 29 SGTILIDLSP---D---DKEF-------------------QSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKL 83 (240)
T ss_dssp -CCEEEECCT---T---SHHH-------------------HHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHH
T ss_pred CCeEEEECCC---C---CHHH-------------------HHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhH
Confidence 4689999999 7 9999 99999999998743321 4789999999999999
Q ss_pred hHHHHhhc--------cCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCC----
Q 043135 318 TERFKKLS--------NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASP---- 385 (470)
Q Consensus 318 ~~~F~~~~--------~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~---- 385 (470)
|++|+.++ ..+|+++|||||+ .+++|+++||+++.+ .+|++||+|||||++++||++||.+..
T Consensus 84 ~~~y~~~k~~m~~~~~~~~ne~~LfHGt~--~~~~I~~~Gf~~~~~---~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~ 158 (240)
T 3u9h_A 84 WERYTHRRKEVSEENHNHANERMLFHGSP--FVNAIIHKGFDERHA---YIGGMFGAGIYFAENSSKSNQYVYGIGGGTG 158 (240)
T ss_dssp HHHHHHHHHHHHHTTTTCCCEEEEEECCT--THHHHHHHCCCGGGC---BTTSTTCSBEEEESSHHHHHTTTTSGGGTTC
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEechH--hHHHHHHcCCCcccc---cCCCcceeeEEecCChhhhhhhhhccccccc
Confidence 99998763 3579999999998 577999999997632 468899999999999999999996421
Q ss_pred ---------CCCceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCc
Q 043135 386 ---------AATAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQ 456 (470)
Q Consensus 386 ---------~~~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Q 456 (470)
..+.++||||+|+||++.+...+. ....||+|||||.|.. .++.|.++|||||+++|
T Consensus 159 ~~~~~d~~~~~~~~~mlLc~V~lG~~~~~~~~~-~~~~pP~gyDSvvg~~-------------~~~~l~~~E~VVy~~~q 224 (240)
T 3u9h_A 159 CPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAM-KMAHSPPGHHSVTGRP-------------SVNGLALAEYVIYRGEQ 224 (240)
T ss_dssp CTTTCCTTCSSSCEEEEEEEEECCSEEEEEECC---CCCCTTCSEEEEEE-------------SSCTTCCCEEEESCGGG
T ss_pred cccccccccccCceEEEEEEEecCceEeecCcc-cccCCCCCCCceecCC-------------CCCCCCCCEEEEEcccc
Confidence 025799999999999998887654 3467899999999842 12347899999999999
Q ss_pred eeeeeEEEEEE
Q 043135 457 IRMRYVVQVNF 467 (470)
Q Consensus 457 v~~~YLI~~~~ 467 (470)
|+|+|||+|++
T Consensus 225 i~P~YlI~y~~ 235 (240)
T 3u9h_A 225 AYPEYLITYQI 235 (240)
T ss_dssp EEEEEEEEEEE
T ss_pred eeEEEEEEEEc
Confidence 99999999985
No 7
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=285.71 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=143.9
Q ss_pred ccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHh
Q 043135 244 RLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKK 323 (470)
Q Consensus 244 ~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~ 323 (470)
.++|.|.+|++ + |+|| +.|++++.+|++ +++|.+|+||+++.++++|..
T Consensus 9 ~~~~~l~~L~~---~---s~Ey-------------------~~v~~~f~~t~~------~~~I~~I~rv~n~~l~~~f~~ 57 (198)
T 2pqf_A 9 DPGFQKITLSS---S---SEEY-------------------QKVWNLFNRTLP------FYFVQKIERVQNLALWEVYQW 57 (198)
T ss_dssp CCSCEEEECCT---T---SHHH-------------------HHHHHHHHTTCT------TSEEEEEEEEECHHHHHHHHH
T ss_pred CCCeEEEEcCC---C---CHHH-------------------HHHHHHHHhhCC------CCEEEEEEEeCCHHHHHHHHH
Confidence 47899999999 7 9999 999999999875 468999999999999999986
Q ss_pred hcc---------CCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccccccCCCCCCCceEEEE
Q 043135 324 LSN---------SKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSADYCNASPAATAGVLLL 394 (470)
Q Consensus 324 ~~~---------~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~Y~~~~~~~~~~~mlL 394 (470)
+++ ..|+++|||||+.+++.+|+++||+++. ++.+|+|||+|||||++++||++||.++. +.++|||
T Consensus 58 ~k~~~~~~~~~~~~ne~~LfHGt~~~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~--~~~~m~l 133 (198)
T 2pqf_A 58 QKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRV--CGVHGTSYGKGSYFARDAAYSHHYSKSDT--QTHTMFL 133 (198)
T ss_dssp HHHHHHHTTTTCCCCEEEEEEECCGGGHHHHHHHCCCTTT--TCCCSSCSCSSEEEESSHHHHHTTCCCSS--SEEEEEE
T ss_pred HHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHhCCCCcc--cCCCCCcccCeEECcCCcchhhhcccCCC--CceEEEE
Confidence 531 3599999999999999999999998653 34578999999999999999999998754 8899999
Q ss_pred EEEeeCCceecccCCCCCCCCCCC-------CeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCceeeeeEEEEEE
Q 043135 395 CEVALGDMSELLSANSDADKLPDG-------KLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVNF 467 (470)
Q Consensus 395 ceValG~~~~~~~~~~~~~~~p~G-------~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~~~ 467 (470)
|+|++|++.+ .+.....||++ ||||.+-. .+++|||||+++||+|+|||+|+.
T Consensus 134 crV~~G~~~~---~~~~~~~pp~~~~~~~~~yDSvv~~~-----------------~~~~e~VVy~~~qiyP~YlI~y~~ 193 (198)
T 2pqf_A 134 ARVLVGEFVR---GNASFVRPPAKEGWSNAFYDSCVNSV-----------------SDPSIFVIFEKHQVYPEYVIQYTT 193 (198)
T ss_dssp EEEECCSEEE---CCTTCSSCCBCSCC--CBCSEEESCS-----------------SSCCEEEESCGGGEEEEEEEEEES
T ss_pred EEEecCCccc---CCccccCCCCCCCCCCCCcccCcCCC-----------------CCCCEEEEECCCcEeeEEEEEEEc
Confidence 9999999853 33344566655 89987621 136999999999999999999974
No 8
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=100.00 E-value=4.3e-35 Score=276.56 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=140.6
Q ss_pred CceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhhc
Q 043135 246 HCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKLS 325 (470)
Q Consensus 246 ~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~~ 325 (470)
+|.|.+|++ . |+|| +.|++++.+|+. +++|.+|+||+++.+|++|+.++
T Consensus 8 ~~~l~~L~~---~---s~Ey-------------------~~V~~~f~~t~~------~~~I~~I~rI~n~~l~~~f~~~k 56 (193)
T 3smj_A 8 NFCVVELLP---S---DPEY-------------------NTVASKFNQTCS------HFRIEKIERIQNPDLWNSYQAKK 56 (193)
T ss_dssp CEEEEECCT---T---STTH-------------------HHHHHHHHHHHT------TSEEEEEEEEECHHHHHHHHHHH
T ss_pred CEEEEECCC---C---ChHH-------------------HHHHHHHHhhCC------CCeEEEEEEECCHHHHHHHHHHH
Confidence 588999999 7 9999 999999999974 57899999999999999999763
Q ss_pred --------cCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeecccccccccc--ccCCCCCCCceEEEEE
Q 043135 326 --------NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSAD--YCNASPAATAGVLLLC 395 (470)
Q Consensus 326 --------~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~--Y~~~~~~~~~~~mlLc 395 (470)
..+|+++|||||+.+++++|+++||+.+. ++.+|++||+|||||+++++|++ ||.++ .++.++||||
T Consensus 57 ~~~~~k~~~~~ne~~L~HGt~~~~~~~I~~~Gf~~~~--~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~-~~g~~~mllc 133 (193)
T 3smj_A 57 KTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSY--AGKNAVAYGKGTYFAVNANYSANDTYSRPD-ANGRKHVYYV 133 (193)
T ss_dssp HHHHHHSTTCCCEEEEEEEECGGGHHHHHHHTTCCCC--TTGGGSSSCCCEEEESSHHHHTSTTTSCCC-TTSCEEEEEE
T ss_pred HHHHHhcCCCCCeEEEEeCCCHHHHHHHHHcCCCCcc--CCCCccccCCeEEecCCcchhcCccccCCC-CCCcEEEEEE
Confidence 24699999999999999999999998643 34468899999999999999999 66553 4678999999
Q ss_pred EEeeCCceecccCCCCCCCCCC--------CCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCceeeeeEEEEE
Q 043135 396 EVALGDMSELLSANSDADKLPD--------GKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVN 466 (470)
Q Consensus 396 eValG~~~~~~~~~~~~~~~p~--------G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~~ 466 (470)
+|++|+... .+..+..||+ +||||.+.- -+++|||||+++||+|+|||.|+
T Consensus 134 rV~~G~~~~---g~~~~~~pP~~~~~~~~~~yDSvv~~~-----------------~~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 134 RVLTGIYTH---GNHSLIVPPSKNPQNPTDLYDTVTDNV-----------------HHPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp EEECCSEEE---CCSSCCSCCBSCTTSTTCBCSEEESCS-----------------SSCSEEEECSTTCEEEEEEEEEE
T ss_pred EEEeccccc---CCCccCCCCCccCCCCCCCccceeCCC-----------------CCCCEEEEEeCCceeeEEEEEEe
Confidence 999999753 3334455543 699998731 13589999999999999999997
No 9
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=100.00 E-value=4.1e-35 Score=282.24 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=139.1
Q ss_pred ccCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHh
Q 043135 244 RLHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKK 323 (470)
Q Consensus 244 ~L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~ 323 (470)
..+|.|.+|++ . |+|| +.|++++.+|++ .++|.+|+||++..++++|..
T Consensus 34 ~~~~~l~~L~~---~---s~ey-------------------~~V~~~f~~t~~------~~~I~~I~rV~n~~l~~~f~~ 82 (221)
T 3blj_A 34 HQLFCMVQLEP---G---QSEY-------------------NTIKDKFTRTCS------SYAIEKIERIQNAFLWQSYQV 82 (221)
T ss_dssp TCSEEEEECCT---T---SHHH-------------------HHHHHHHHHHHT------TSEEEEEEEEEEHHHHHHHHH
T ss_pred CCCEEEEECCC---C---CHHH-------------------HHHHHHHHhhCC------CCEEEEEEEEcChhHHHHHHH
Confidence 46799999999 7 9999 999999999975 468999999999999999987
Q ss_pred hc--------cCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeecccccccccc--ccCCCCCCCceEEE
Q 043135 324 LS--------NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSAD--YCNASPAATAGVLL 393 (470)
Q Consensus 324 ~~--------~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~~--Y~~~~~~~~~~~ml 393 (470)
++ ..+|+++|||||+.+++++|+++||+.+ .++.+|+|||+|||||++++||++ ||.++ .++.++||
T Consensus 83 ~k~~~~~k~~~~~ne~lLfHGt~~~~~~~I~~~Gf~~~--~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~-~~g~~~ml 159 (221)
T 3blj_A 83 KKRQMDIKNDHKNNERLLFHGTDADSVPYVNQHGFNRS--CAGKNAVSYGKGTYFAVDASYSAKDTYSKPD-SNGRKHMY 159 (221)
T ss_dssp HHHHHHHHSSSCCCEEEEEEEECGGGHHHHHHHCCCTT--TC-----CCCSSEEEESSHHHHHSTTTSCCC-TTSCEEEE
T ss_pred HHHHHHHhcCCCCceEEEeccCChHHHHHHHHhCCCCc--ccCCCCCccCCeEECCcchhhhcCcccccCC-CCCcEEEE
Confidence 64 2579999999999999999999999964 345578899999999999999998 88765 46789999
Q ss_pred EEEEeeCCceecccCCCCCCCCC--------CCCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCceeeeeEEEE
Q 043135 394 LCEVALGDMSELLSANSDADKLP--------DGKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQV 465 (470)
Q Consensus 394 LceValG~~~~~~~~~~~~~~~p--------~G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~ 465 (470)
||+|++|++..- +..+..|| .+||||.+.. .+++|||||+++||+|+|||.|
T Consensus 160 lcrV~~G~~~~g---~~~~~~pp~~~~~~~~~~yDSvv~~~-----------------~~~~e~VVy~~~qiyP~YlI~y 219 (221)
T 3blj_A 160 VVRVLTGVFTKG---RAGLVTPPPKNPHNPTDLFDSVTNNT-----------------RSPKLFVVFFDNQAYPEYLITF 219 (221)
T ss_dssp EEEEECCSEEEC---CTTCSSCCBSSTTSTTSBCSEEESCS-----------------SSCSEEEECSTTSEEEEEEEEE
T ss_pred EEEEEeCCccCC---ChhccCCCcccCCCCCCCCCccccCC-----------------CCCCEEEEEcCCeEeeeEEEEE
Confidence 999999997532 22333343 4899998631 1469999999999999999998
Q ss_pred E
Q 043135 466 N 466 (470)
Q Consensus 466 ~ 466 (470)
+
T Consensus 220 ~ 220 (221)
T 3blj_A 220 T 220 (221)
T ss_dssp E
T ss_pred E
Confidence 6
No 10
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=280.89 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=144.9
Q ss_pred cCceeeeecCCcccCCCccccccccccccchhhHHhhhhHHHHHHHHHhccCCCCCCcccccceeEEEeechHhHHHHhh
Q 043135 245 LHCQLTPLAGADLASHHSKYFQFSKIGLILPVSIIILEQTFSIAKYLLNTHAKTHSSYSVDIVQIFRVEREGETERFKKL 324 (470)
Q Consensus 245 L~~~i~~l~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~~~~~~~~~~~I~~If~V~r~~e~~~F~~~ 324 (470)
.-|.|.+|++ . |+|| +.|+++|.+|+++++ .+++|.+|+||+|+.+|++|+.+
T Consensus 9 ~~~~L~~L~~---~---s~Ey-------------------~~V~~~F~~t~~~~~--~~~~I~~I~RIqn~~l~~~f~~~ 61 (217)
T 3hkv_A 9 PWNNLERLAE---N---TGEF-------------------QEVVRAFYDTLDAAR--SSIRVVRVERVSHPLLQQQYELY 61 (217)
T ss_dssp -CCCEEECCS---S---SHHH-------------------HHHHHHHHHTTGGGG--GTEEEEEEEEECCHHHHHHHHHH
T ss_pred ccccceECCC---C---ChHH-------------------HHHHHHHHhhcCCcC--CCceEEEEEEECChhHHHHHHHH
Confidence 3489999999 7 9999 999999999987654 25899999999999999999976
Q ss_pred c--------cCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCcceeeeeeeeccccccccc--cccCCCCCCCceEEEE
Q 043135 325 S--------NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSNSA--DYCNASPAATAGVLLL 394 (470)
Q Consensus 325 ~--------~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~fG~GIYfad~~skS~--~Y~~~~~~~~~~~mlL 394 (470)
+ ...|+++|||||+.+++.+|+++||+.+. ++.+|+|||+|||||++++||+ .||.++ .++.++|||
T Consensus 62 k~~m~~k~~~~~ne~~LfHGt~~~~~~~I~~~GF~~~~--~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~-~~g~~~m~l 138 (217)
T 3hkv_A 62 RERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRSF--CGRNATVYGKGVYFAKRASLSVQDRYSPPN-ADGHKAVFV 138 (217)
T ss_dssp HHHHHHHCCSSCSEEEEEEEECGGGHHHHHHHCSCTTT--SCCCCCTTCSSEEEESSHHHHTSTTTSCCC-TTSEEEEEE
T ss_pred HHHHHHhcCCCCceEEEEeCCCHHHHHHHHhcCCcccc--cCcchhccccceeccCCccccccccccccc-CCCceEEEE
Confidence 4 25699999999999999999999998643 3446899999999999999997 698765 467899999
Q ss_pred EEEeeCCceecccCCCCCCCCCC--------CCeeeeccCCCCCCCCCCeEecCCCcCCCcEEEEeeCCceeeeeEEEEE
Q 043135 395 CEVALGDMSELLSANSDADKLPD--------GKLITKGVGQTAPDPLEAETLEDGGHLLYNEYIVYSVDQIRMRYVVQVN 466 (470)
Q Consensus 395 ceValG~~~~~~~~~~~~~~~p~--------G~dSv~g~g~~~p~~~~~~~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~~ 466 (470)
|+|++|+... .+..+..||. +||||.+.- .+++|||||+.+|++|+|||.|+
T Consensus 139 crVl~G~~~~---g~~~~~~PP~~~~~~~~~~yDSvvd~~-----------------~np~~~VVf~~~qiyPeYLI~y~ 198 (217)
T 3hkv_A 139 ARVLTGDYGQ---GRRGLRAPPLRGPGHVLLRYDSAMDCI-----------------CQPSIFVIFHDTQALPTHLITCE 198 (217)
T ss_dssp EEEECCSEEE---CCTTCSSSCBCCTTCSSSBCSEEESCS-----------------SSCCEEEECCTTSEEEEEEEEEE
T ss_pred EEEEcccccc---CCCccCCCCCCccCCCCCceeEEECCC-----------------CCCCEEEEEcCCcCceeEEEEEe
Confidence 9999999643 3334445553 599998731 24699999999999999999998
Q ss_pred EE
Q 043135 467 FK 468 (470)
Q Consensus 467 ~~ 468 (470)
-.
T Consensus 199 ~~ 200 (217)
T 3hkv_A 199 HV 200 (217)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 11
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=190.04 Aligned_cols=80 Identities=44% Similarity=0.743 Sum_probs=75.4
Q ss_pred eEEEEEeecCcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhh------------cC
Q 043135 5 YDARLNQTNIEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKW------------QF 72 (470)
Q Consensus 5 y~~~L~ktd~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f------------~F 72 (470)
|+|+|++||++.|+|+||+|||++++.++ |+|||+|||||+.||++++ +|.++++|+++|+++| +|
T Consensus 33 y~~~L~~~d~~~n~nrfY~lQll~~~~g~-~~v~~~WGRIG~~Gq~~~~-~~~s~~~A~~~F~k~f~~Ktgn~w~~r~~f 110 (124)
T 2eoc_A 33 YNCTLNQTNIENNNNKFYIIQLLQDSNRF-FTCWNRWGRVGEVGQSKIN-HFTRLEDAKKDFEKKFREKTKNNWAERDHF 110 (124)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEECTTSC-EEEEEECSCTTSCCCCEEE-EESSHHHHHHHHHHHHHHHHSSCSTTGGGC
T ss_pred EEEEEEeecCCCCceeEEEEEEEecCCce-EEEEEEECCCCCCCceEee-cCCCHHHHHHHHHHHHHHHHcCCcccccCc
Confidence 99999999999999999999999987555 9999999999999999976 7899999999999999 69
Q ss_pred ccCCCCceEEeccc
Q 043135 73 TSYPKCYTWLERDY 86 (470)
Q Consensus 73 ~k~pgKY~~ve~d~ 86 (470)
+++||||.+||+|+
T Consensus 111 ~~~pgky~~~e~d~ 124 (124)
T 2eoc_A 111 VSHPGKYTLIEVQA 124 (124)
T ss_dssp CCCSSSCEEECCCC
T ss_pred ccCCCceeEEEecC
Confidence 99999999999985
No 12
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=181.92 Aligned_cols=159 Identities=19% Similarity=0.300 Sum_probs=106.1
Q ss_pred HHHHHHHHhccCCCCCCcccccceeEEEe-echHhHHHHhhccCCCceEeeCCCCCcCHHHHhhcCCCCCCCCCCCccee
Q 043135 285 FSIAKYLLNTHAKTHSSYSVDIVQIFRVE-REGETERFKKLSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYM 363 (470)
Q Consensus 285 ~~i~~~~~~t~~~~~~~~~~~I~~If~V~-r~~e~~~F~~~~~~~N~~lL~HGT~~~n~~~Il~~Gl~i~p~~~~~~G~~ 363 (470)
..|.+++...+.+ ......||+|. +.++.++|+++++..|++++||||+.+||.+||++||++++ .+|++
T Consensus 104 ~~l~~~~g~~~~p-----~~~P~~If~V~~~~~~~~~f~~~~~~~~~~~~~HGS~l~n~~sIL~~GL~~~~----~~g~~ 174 (277)
T 4f0d_A 104 EKIQKLTGAPHTP-----VPAPDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLHCHL----NKTSL 174 (277)
T ss_dssp HHHHHHTCSCSSC-----CCCCSEEEEEEECTTHHHHHHHHHTTSCEEEEEEECCGGGHHHHHHHCSCCC------CCCS
T ss_pred HHHHHHhCCCCCC-----CCCCceeEEEecCcchhhHHHHhhccCCcEEEEcCCcHHHHHHHHhcccccCc----ccccc
Confidence 5555544433222 44678999999 77888999998888999999999999999999999999875 47999
Q ss_pred eeeeeeccccccccccccCCCC------CC-CceEEEEEEEeeCCceecccCCCCCCCCCCCCeeeeccCCCCCCCCCCe
Q 043135 364 FGKGVYFADMFSNSADYCNASP------AA-TAGVLLLCEVALGDMSELLSANSDADKLPDGKLITKGVGQTAPDPLEAE 436 (470)
Q Consensus 364 fG~GIYfad~~skS~~Y~~~~~------~~-~~~~mlLceValG~~~~~~~~~~~~~~~p~G~dSv~g~g~~~p~~~~~~ 436 (470)
||+|||||+++++|++||.... -+ ..++|.||||+.......... ..||.- +.+ .....
T Consensus 175 fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~~k~q~~---------~~~~~~-~~~----~~~~~ 240 (277)
T 4f0d_A 175 FGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQTK---------KKDSKE-IDR----RRARI 240 (277)
T ss_dssp SSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC----------------------------------
T ss_pred cCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCCcceeeee---------cccccc-ccc----ccccc
Confidence 9999999999999999997532 11 268999999997443221000 001100 000 00000
Q ss_pred EecCCCcCCCcEEEEeeCCceeeeeEEEEE
Q 043135 437 TLEDGGHLLYNEYIVYSVDQIRMRYVVQVN 466 (470)
Q Consensus 437 ~~~~G~~l~~nEyVVYd~~Qv~~~YLI~~~ 466 (470)
...+|+.+....|||-|++-|++|||+-+.
T Consensus 241 ~~s~~~~~p~~y~vV~n~~~v~~rYllvy~ 270 (277)
T 4f0d_A 241 KHSEGGDIPPKYFVVTNNQLLRVKYLLVYS 270 (277)
T ss_dssp ----------CCEEECCGGGEEEEEEEEEE
T ss_pred ccccCCCCCCCEEEEEccceEEEEEEEEEc
Confidence 112345666789999999999999999874
No 13
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=4.4e-06 Score=85.37 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=52.9
Q ss_pred CcCCCcceEEEEEEeeCCCCcEEEEEEeeecccCCCceeecCCCCHHHHHHHHHHhhcCccCCCCceEEe
Q 043135 14 IEDNSNDFYVIQLLESDGGGECMVYDRWGRVGVKGQDTIFGPYNLQDTAINEFEQKWQFTSYPKCYTWLE 83 (470)
Q Consensus 14 ~~~n~nkFY~mQll~~~~~~~y~v~~rWGRvG~~G~~~~~~~f~s~~~Ai~~F~k~f~F~k~pgKY~~ve 83 (470)
...|++|||.|.+. .+.|-++|||||+.||.+.+ .|.+.++|.++|.|+-. +|..++|....
T Consensus 8 ~~~~~~kf~~~~~~------~~~~~~~~GriG~~g~~~~~-~f~~~~~a~~~~~~l~~-~k~~kGy~~~~ 69 (362)
T 2ra8_A 8 QDFKSQKFWSIDVR------GTDVIVNYGKLGTDGQTQVK-NFSSAGEAEKAAGKLIA-EKTKKGYVETL 69 (362)
T ss_dssp ESSSCEEEEEEEEE------TTEEEEEEEETTSCCEEEEE-ECSSHHHHHHHHHHHHH-HHHHTTCEECC
T ss_pred ccCCcCceEEEEEe------ccEEEEEECCCCCCceEEee-eCCCHHHHHHHHHHHHH-HHHhcCCcccc
Confidence 44699999999997 24789999999999999876 59999999999999994 77778887543
No 14
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=64.32 E-value=2.6 Score=38.74 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEeeCCCCCcCHHHHhhcCCCC
Q 043135 331 MLLWHGSRLTNWTGILSQGLRI 352 (470)
Q Consensus 331 ~lL~HGT~~~n~~~Il~~Gl~i 352 (470)
..|||||...+|.+|+.+||+.
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~ 113 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMR 113 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCC
T ss_pred CEEEEeCCHHHHHHHHHhCCCC
Confidence 5999999999999999999873
No 15
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=38.76 E-value=35 Score=32.84 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=42.2
Q ss_pred CCcHHHHHHHHHHc---CH-HHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHHHHHh
Q 043135 112 KLEPRVAKFLSLIC---NI-SMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRIADVI 168 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~-~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i~~~l 168 (470)
+|...+..+++.++ ++ ..+|.+|..+|++.. ..||..|+.++..+-.++|+++.+.|
T Consensus 222 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 284 (286)
T 2r91_A 222 SLQFLLDEIVESARHIGYAAAVYELVEIFQGYEAGEPRGPVYPLDPEEKAWLRAAVAKAKSQL 284 (286)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCSCCCBCCTTSCCCCHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34455566666553 36 778999999998654 89999999999888888887776543
No 16
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=37.86 E-value=46 Score=32.03 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHc---C-HHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---N-ISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRIA 165 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~-~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i~ 165 (470)
+|...+..+++.++ + +..+|.+|..+|++.. ..||..|+.++..+-.++|.++.
T Consensus 221 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 280 (288)
T 2nuw_A 221 RLQELINRLADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLK 280 (288)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCCBCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45556667777664 4 6678999998998654 89999999998877777776664
No 17
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=36.82 E-value=52 Score=31.78 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHc---C-HHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---N-ISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRIAD 166 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~-~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i~~ 166 (470)
+|...+..+++.++ + +..+|.+|..+|++.. ..||..|+.++..+-.++|.++..
T Consensus 223 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 283 (293)
T 1w3i_A 223 KLQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIRA 283 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCBCCCTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45556667777664 4 6678999998998654 899999999988877777776653
No 18
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=31.57 E-value=52 Score=31.96 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC---CCCCCCccHHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN---KLPLGTLSKSTILKGYDVLKRIA 165 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~---~~Plg~Ls~~~i~~~~~iL~~i~ 165 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|+++.
T Consensus 241 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~~R~Pl~~l~~~~~~~l~~~l~~~~ 300 (303)
T 2wkj_A 241 KLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLM 300 (303)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCSSCCCCTTSCCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45555666666654 46778999998998654 89999999998877777776654
No 19
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.46 E-value=47 Score=32.45 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHc----CHHHHHHHHHHhcc-CC--CCCCCCCccHHHHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC----NISMMKQVMMEIGY-NA--NKLPLGTLSKSTILKGYDVLKRIADV 167 (470)
Q Consensus 112 ~L~~~v~~l~~~i~----~~~~~~~~~~~~~~-d~--~~~Plg~Ls~~~i~~~~~iL~~i~~~ 167 (470)
+|...+..|++.++ ++..+|.+|..+|+ +. -..||..||.++..+-.++|.++..+
T Consensus 243 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 305 (313)
T 3dz1_A 243 NLFDAHLPLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLARV 305 (313)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Confidence 45556667777775 45678999999997 43 48999999999988877777766543
No 20
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=31.18 E-value=88 Score=30.10 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHHHHc---CHHHHHHHHHH-hc-cCC--CCCCCCCccHHHHHHHHHHHHHHH
Q 043135 111 TKLEPRVAKFLSLIC---NISMMKQVMME-IG-YNA--NKLPLGTLSKSTILKGYDVLKRIA 165 (470)
Q Consensus 111 s~L~~~v~~l~~~i~---~~~~~~~~~~~-~~-~d~--~~~Plg~Ls~~~i~~~~~iL~~i~ 165 (470)
.+|...+..+++.++ ++..+|.+|.. +| ++. -..||..|+.++..+-.++|.++.
T Consensus 228 ~~l~~~l~~l~~~~~~~~~~~~~K~al~~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 289 (294)
T 3b4u_A 228 GKDDPRIVDLVVELLKFPVTPAVKVLVSHTTGETIWSDVRAPLVAISPEDRRQIEGAFDALF 289 (294)
T ss_dssp CCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHCCGGGGCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHhCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 567788888888775 47788999998 88 653 389999999998877777776654
No 21
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=30.03 E-value=58 Score=31.28 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|+++
T Consensus 229 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 286 (289)
T 2yxg_A 229 EIHYKLFPLMKAMFIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKILENVLKDL 286 (289)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHTTCSCCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 34555666777665 56778999998897643 8999999999887777777654
No 22
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=29.97 E-value=46 Score=32.41 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 113 LEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 113 L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
|...+..|++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|.++
T Consensus 244 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 300 (304)
T 3l21_A 244 INIAVAPLCNAMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAA 300 (304)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 4444555555554 56778999999999755 8999999999888777777654
No 23
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=29.96 E-value=61 Score=31.33 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..||.++..+-.++|.++
T Consensus 230 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 287 (297)
T 2rfg_A 230 RIHDLLAPLHEALFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINEL 287 (297)
T ss_dssp HHHHHHHHHHHHHHSSSTTHHHHHHHHHTTSSCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 34455666776664 56778999998898643 8999999999887777776654
No 24
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.79 E-value=65 Score=31.21 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHcC---HHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLICN---ISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRIAD 166 (470)
Q Consensus 112 ~L~~~v~~l~~~i~~---~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i~~ 166 (470)
+|...+..+++.++. +..+|.+|..+|++.. ..||..||.++..+-.++|.++.+
T Consensus 234 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 293 (300)
T 3eb2_A 234 MLQRKLWRVNEAFAKFNLAACIKAGLALQGYDVGDPIPPQAALTAEERKAVEKVLAEIAE 293 (300)
T ss_dssp HHHHHHTHHHHHHTTSCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 344555566666653 5778999999998754 889999999988877777766543
No 25
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=27.76 E-value=85 Score=30.60 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHHcC------HHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLICN------ISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRIA 165 (470)
Q Consensus 112 ~L~~~v~~l~~~i~~------~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i~ 165 (470)
+|...+..+++.++. +..+|.+|..+|++.. ..||..|+.++..+-.++|.++.
T Consensus 240 ~l~~~l~~l~~~~~~~~~~~~~~~iK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 301 (314)
T 3d0c_A 240 DVWEDVVPFEDLRAKHNNGNNVVIIKEAMEQLGLRAGVTREPVNPLSPNDRLELEELLKSWN 301 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTCCCCCCCTTCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 455556667765532 5567889998898654 89999999998888778877764
No 26
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=26.39 E-value=44 Score=32.27 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|.++
T Consensus 231 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 288 (294)
T 2ehh_A 231 EIHYYLHDLFKVLFIETNPIPVKTACWMLGMCEKEFRLPLTEMSPENENKLREVLKKY 288 (294)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSCSCCCTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 34455666777665 56778999998897644 8999999999887777777664
No 27
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=26.06 E-value=64 Score=31.36 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|.++
T Consensus 246 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 303 (306)
T 1o5k_A 246 EVHRKLRPLMKALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKES 303 (306)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSCCCCCTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 45556667777664 56788999998898643 8999999999887777776653
No 28
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=25.85 E-value=53 Score=31.85 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKR 163 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~ 163 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|++
T Consensus 242 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 298 (301)
T 1xky_A 242 KLHQLLVRVTDSLFMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQS 298 (301)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Confidence 45556667777664 56788999998898643 899999999987766666554
No 29
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=25.43 E-value=58 Score=31.35 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=39.1
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|+++
T Consensus 231 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 288 (291)
T 3a5f_A 231 KIQLDSLALTNALFIETNPIPVKTAMNLMNMKVGDLRLPLCEMNENNLEILKKELKAY 288 (291)
T ss_dssp HHHHHTHHHHHHTTSSSTTHHHHHHHHHTTCCCCCCCTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 34455566777665 56778999998898643 8999999999887776766653
No 30
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=24.28 E-value=72 Score=30.65 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|.++
T Consensus 231 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 288 (292)
T 2vc6_A 231 KLQDRLMPLHRALFLETNPAGAKYALQRLGRMRGDLRLPLVTISPSFQEEIDDAMRHA 288 (292)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSCCCCCTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 34555666776654 56788999998898643 8999999999887777777654
No 31
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.08 E-value=93 Score=29.89 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCC-CCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPL-GTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Pl-g~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..|| ..|+.++..+-.++|+++
T Consensus 233 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~~l~~~~~~~l~~~l~~~ 291 (293)
T 1f6k_A 233 EIQHVTNDLIEGILANGLYLTIKELLKLEGVDAGYCREPMTSKATAEQVAKAKDLKAKF 291 (293)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCBCCCTTSCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 45556666776664 36778999998897654 8899 999999877766666653
No 32
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.48 E-value=78 Score=30.43 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCC---CCCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNA---NKLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~---~~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++. -..||..|+.++..+-.++|+++
T Consensus 231 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 289 (292)
T 2ojp_A 231 VINERLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHA 289 (292)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSSCCCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 34455666666554 5678899999999865 38999999999887776766653
No 33
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=22.82 E-value=1.1e+02 Score=30.65 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=41.4
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
.|...+..|++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|.++
T Consensus 278 ~l~~~l~pl~~~l~~~~~p~~vK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 335 (360)
T 4dpp_A 278 SLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKEI 335 (360)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTSSCSEEETTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 45566677777665 45678999999998754 7999999999888777777665
No 34
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=22.44 E-value=1.5e+02 Score=28.84 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 112 KLEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 112 ~L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
+|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|.++
T Consensus 255 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 312 (315)
T 3na8_A 255 ALFYRQLPLLDFILRRGLPTTIKAGLGLSGLEVGAPRLPVQALDTEGCRYLQGLLEEL 312 (315)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 34455666666654 45678999999998755 8899999999988777777664
No 35
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=21.51 E-value=81 Score=30.54 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCccHHHHHHHHHHHHHH
Q 043135 113 LEPRVAKFLSLIC---NISMMKQVMMEIGYNAN--KLPLGTLSKSTILKGYDVLKRI 164 (470)
Q Consensus 113 L~~~v~~l~~~i~---~~~~~~~~~~~~~~d~~--~~Plg~Ls~~~i~~~~~iL~~i 164 (470)
|...+..+++.++ ++..+|.+|..+|++.. ..||..|+.++..+-.++|+++
T Consensus 245 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 301 (304)
T 3cpr_A 245 INAKLSPLVAAQGRLGGVSLAKAALRLQGINVGDPRLPIMAPNEQELEALREDMKKA 301 (304)
T ss_dssp HHHHTHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 4444555655443 56678889998898654 8999999999877766666653
No 36
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=21.28 E-value=71 Score=31.10 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhcc-C--CCCCCCCCccHHHHHHHHHHHHHHHHH
Q 043135 113 LEPRVAKFLSLIC---NISMMKQVMMEIGY-N--ANKLPLGTLSKSTILKGYDVLKRIADV 167 (470)
Q Consensus 113 L~~~v~~l~~~i~---~~~~~~~~~~~~~~-d--~~~~Plg~Ls~~~i~~~~~iL~~i~~~ 167 (470)
|...+..|++.++ ++..+|.+|..+|+ + .-..||..|+.++..+-.++|+++..+
T Consensus 243 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 303 (309)
T 3fkr_A 243 RYQAWLPLINHENRQSGILTAKALMREGGVIASERPRHPMPELHPDTRAELLAIARRLDPL 303 (309)
T ss_dssp HHHHHHHHHHHHHHTTGGGHHHHHHHHTTSSSCCCCCTTSCCCCHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 3344445555443 46678999999997 4 358999999999988888888877543
Done!