Query 043137
Match_columns 445
No_of_seqs 172 out of 1464
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 13:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00081 enolase; Provisional 100.0 3.6E-93 7.8E-98 723.8 47.5 433 3-437 2-439 (439)
2 KOG2670 Enolase [Carbohydrate 100.0 1.6E-92 3.4E-97 660.3 36.5 429 3-441 1-433 (433)
3 PLN00191 enolase 100.0 1.8E-90 4E-95 706.3 47.5 431 3-443 26-457 (457)
4 COG0148 Eno Enolase [Carbohydr 100.0 6.6E-90 1.4E-94 663.3 43.3 417 1-438 1-419 (423)
5 PRK00077 eno enolase; Provisio 100.0 1.8E-88 3.9E-93 693.6 46.0 418 3-440 2-423 (425)
6 cd03313 enolase Enolase: Enola 100.0 2E-86 4.2E-91 675.3 44.0 405 7-426 1-408 (408)
7 TIGR01060 eno phosphopyruvate 100.0 1.5E-85 3.4E-90 672.0 44.6 417 5-439 1-423 (425)
8 PTZ00378 hypothetical protein; 100.0 2.7E-76 5.9E-81 594.2 44.2 412 3-444 49-497 (518)
9 PRK08350 hypothetical protein; 100.0 2.1E-67 4.7E-72 504.4 37.1 329 4-431 3-334 (341)
10 PF00113 Enolase_C: Enolase, C 100.0 6.4E-65 1.4E-69 490.2 27.9 293 149-441 2-295 (295)
11 PRK15072 bifunctional D-altron 100.0 1.8E-46 3.9E-51 383.3 29.8 309 3-397 1-333 (404)
12 cd03328 MR_like_3 Mandelate ra 100.0 1.7E-46 3.7E-51 377.1 26.0 292 4-399 1-306 (352)
13 cd03327 MR_like_2 Mandelate ra 100.0 1.8E-46 3.8E-51 375.8 24.7 293 4-399 1-293 (341)
14 TIGR01502 B_methylAsp_ase meth 100.0 1.6E-44 3.6E-49 364.4 35.2 338 20-427 50-405 (408)
15 cd03314 MAL Methylaspartate am 100.0 2.5E-44 5.5E-49 359.4 34.2 324 20-422 13-364 (369)
16 cd03321 mandelate_racemase Man 100.0 2.8E-44 6.1E-49 361.9 33.5 296 3-399 1-308 (355)
17 cd03322 rpsA The starvation se 100.0 8.1E-45 1.8E-49 366.3 29.2 289 4-398 1-291 (361)
18 PRK14017 galactonate dehydrata 100.0 5.5E-45 1.2E-49 370.4 27.8 302 3-398 1-303 (382)
19 TIGR02534 mucon_cyclo muconate 100.0 2.3E-44 4.9E-49 364.4 30.9 298 5-397 1-311 (368)
20 cd03318 MLE Muconate Lactonizi 100.0 3.9E-44 8.5E-49 362.5 30.4 300 4-398 1-315 (365)
21 cd03325 D-galactonate_dehydrat 100.0 4.3E-44 9.3E-49 360.0 26.9 297 4-398 1-302 (352)
22 cd03326 MR_like_1 Mandelate ra 100.0 1.1E-43 2.4E-48 359.4 26.6 283 19-399 26-334 (385)
23 PRK15440 L-rhamnonate dehydrat 100.0 6.6E-44 1.4E-48 361.5 25.0 276 20-399 57-332 (394)
24 cd03324 rTSbeta_L-fuconate_deh 100.0 1.1E-43 2.3E-48 362.2 26.4 291 3-382 1-352 (415)
25 cd03329 MR_like_4 Mandelate ra 100.0 3.6E-43 7.8E-48 355.5 26.8 295 4-399 1-312 (368)
26 TIGR01928 menC_lowGC/arch o-su 100.0 2.1E-42 4.5E-47 343.9 28.3 286 19-407 21-306 (324)
27 cd03317 NAAAR N-acylamino acid 100.0 2.2E-42 4.7E-47 348.5 28.8 279 19-398 24-302 (354)
28 cd03316 MR_like Mandelate race 100.0 2.2E-42 4.8E-47 348.9 27.1 306 4-399 1-316 (357)
29 cd03323 D-glucarate_dehydratas 100.0 4.8E-42 1E-46 349.1 29.6 310 4-398 1-337 (395)
30 COG4948 L-alanine-DL-glutamate 100.0 1.4E-42 3.1E-47 351.9 25.6 297 3-397 4-310 (372)
31 TIGR03247 glucar-dehydr glucar 100.0 3.1E-41 6.8E-46 346.0 28.7 312 4-398 5-354 (441)
32 cd03319 L-Ala-DL-Glu_epimerase 100.0 5.6E-39 1.2E-43 318.8 26.8 277 20-398 26-304 (316)
33 PRK15129 L-Ala-D/L-Glu epimera 100.0 2.7E-36 5.9E-41 299.7 26.7 263 19-396 27-289 (321)
34 cd03315 MLE_like Muconate lact 100.0 7.2E-35 1.6E-39 282.3 22.9 209 118-398 46-256 (265)
35 cd00308 enolase_like Enolase-s 100.0 1.2E-33 2.6E-38 268.0 22.3 176 118-399 45-222 (229)
36 cd03320 OSBS o-Succinylbenzoat 100.0 1.2E-33 2.6E-38 273.4 17.8 203 117-399 49-253 (263)
37 TIGR01927 menC_gamma/gm+ o-suc 100.0 6.3E-33 1.4E-37 273.5 21.0 258 19-399 21-283 (307)
38 PRK02714 O-succinylbenzoate sy 100.0 9E-32 1.9E-36 266.9 24.2 258 19-399 28-291 (320)
39 PLN02980 2-oxoglutarate decarb 100.0 2.4E-31 5.2E-36 310.5 28.1 303 2-398 930-1265(1655)
40 PRK05105 O-succinylbenzoate sy 100.0 2.7E-29 5.8E-34 249.3 23.3 252 19-398 27-283 (322)
41 PF03952 Enolase_N: Enolase, N 100.0 1.3E-28 2.9E-33 210.7 14.6 131 4-140 1-132 (132)
42 PRK02901 O-succinylbenzoate sy 99.8 1.1E-20 2.3E-25 187.2 15.4 138 224-399 118-258 (327)
43 COG3799 Mal Methylaspartate am 99.8 4.4E-17 9.6E-22 152.1 21.3 303 65-426 87-405 (410)
44 PF07476 MAAL_C: Methylasparta 99.7 1.4E-16 3.1E-21 143.9 19.0 186 224-427 47-246 (248)
45 PF02746 MR_MLE_N: Mandelate r 99.7 5.6E-17 1.2E-21 137.5 12.8 107 4-141 5-117 (117)
46 PF01188 MR_MLE: Mandelate rac 99.4 3.2E-12 7E-17 97.2 9.2 66 230-328 2-67 (67)
47 PF13378 MR_MLE_C: Enolase C-t 99.1 1.6E-10 3.5E-15 96.8 8.2 71 328-401 1-71 (111)
48 COG1441 MenC O-succinylbenzoat 98.9 2.9E-08 6.2E-13 90.6 12.6 132 228-397 145-281 (321)
49 PF05034 MAAL_N: Methylasparta 98.3 1.9E-05 4.1E-10 68.2 12.3 106 21-145 52-158 (159)
50 cd02932 OYE_YqiM_FMN Old yello 98.1 8.7E-05 1.9E-09 74.5 15.0 95 235-352 212-319 (336)
51 cd04733 OYE_like_2_FMN Old yel 97.8 9.5E-05 2E-09 74.3 9.5 95 235-352 207-321 (338)
52 cd02803 OYE_like_FMN_family Ol 97.4 0.0051 1.1E-07 61.4 15.0 95 235-352 199-310 (327)
53 cd02930 DCR_FMN 2,4-dienoyl-Co 97.3 0.00081 1.7E-08 68.0 8.1 72 277-352 219-305 (353)
54 cd02801 DUS_like_FMN Dihydrour 96.3 0.024 5.3E-07 53.4 9.6 67 283-353 139-213 (231)
55 cd04734 OYE_like_3_FMN Old yel 92.3 2 4.2E-05 43.3 12.1 72 278-353 224-315 (343)
56 COG0821 gcpE 1-hydroxy-2-methy 91.5 0.77 1.7E-05 45.2 7.8 73 307-384 61-133 (361)
57 PRK00366 ispG 4-hydroxy-3-meth 91.0 0.74 1.6E-05 45.9 7.2 73 308-385 68-141 (360)
58 TIGR00612 ispG_gcpE 1-hydroxy- 90.4 0.72 1.6E-05 45.6 6.5 73 308-385 60-132 (346)
59 TIGR01182 eda Entner-Doudoroff 90.3 2 4.3E-05 39.9 9.2 108 280-404 18-126 (204)
60 PF00478 IMPDH: IMP dehydrogen 87.8 4.2 9.1E-05 41.0 10.0 94 309-409 137-243 (352)
61 cd04747 OYE_like_5_FMN Old yel 87.6 6.8 0.00015 39.7 11.6 72 278-352 231-327 (361)
62 PF04551 GcpE: GcpE protein; 87.4 1.1 2.5E-05 44.6 5.7 72 308-385 57-142 (359)
63 PRK07107 inosine 5-monophospha 86.9 8.9 0.00019 40.7 12.4 118 283-409 242-384 (502)
64 PRK10605 N-ethylmaleimide redu 86.2 9 0.0002 38.9 11.7 70 278-352 244-320 (362)
65 cd07940 DRE_TIM_IPMS 2-isoprop 86.2 23 0.00049 34.2 14.0 129 277-409 15-166 (268)
66 PRK13523 NADPH dehydrogenase N 85.8 4.6 0.0001 40.5 9.2 71 278-352 223-304 (337)
67 cd02929 TMADH_HD_FMN Trimethyl 85.8 6.4 0.00014 40.1 10.4 42 309-353 278-319 (370)
68 cd04735 OYE_like_4_FMN Old yel 84.8 5.5 0.00012 40.2 9.3 72 277-351 230-311 (353)
69 cd00956 Transaldolase_FSA Tran 84.2 11 0.00024 35.1 10.4 117 280-406 62-185 (211)
70 TIGR00735 hisF imidazoleglycer 84.0 17 0.00036 34.9 11.9 122 245-377 124-253 (254)
71 cd07939 DRE_TIM_NifV Streptomy 84.0 33 0.00071 32.9 13.9 128 277-409 15-162 (259)
72 TIGR02090 LEU1_arch isopropylm 82.9 29 0.00064 35.2 13.7 126 277-407 17-162 (363)
73 cd04726 KGPDC_HPS 3-Keto-L-gul 82.2 36 0.00079 30.9 13.0 116 280-405 11-132 (202)
74 cd07944 DRE_TIM_HOA_like 4-hyd 81.8 52 0.0011 31.8 15.1 139 277-419 15-174 (266)
75 PRK10415 tRNA-dihydrouridine s 81.7 12 0.00027 37.2 10.2 80 283-366 150-237 (321)
76 PTZ00314 inosine-5'-monophosph 80.8 26 0.00056 37.2 12.8 117 285-409 243-376 (495)
77 cd02933 OYE_like_FMN Old yello 80.6 16 0.00035 36.6 10.8 69 279-352 238-313 (338)
78 PRK06552 keto-hydroxyglutarate 80.1 16 0.00034 34.2 9.8 110 280-405 23-135 (213)
79 cd02931 ER_like_FMN Enoate red 79.8 12 0.00027 38.2 9.7 72 277-352 247-334 (382)
80 COG1902 NemA NADH:flavin oxido 78.7 20 0.00043 36.4 10.6 72 277-352 232-317 (363)
81 PRK08255 salicylyl-CoA 5-hydro 78.6 14 0.0003 41.5 10.5 72 277-352 633-716 (765)
82 TIGR03128 RuMP_HxlA 3-hexulose 78.1 55 0.0012 29.9 14.9 119 280-406 10-133 (206)
83 PRK10550 tRNA-dihydrouridine s 77.8 25 0.00054 34.9 11.0 72 283-358 149-229 (312)
84 COG0800 Eda 2-keto-3-deoxy-6-p 76.5 38 0.00083 31.5 10.9 91 280-382 23-114 (211)
85 PF01207 Dus: Dihydrouridine s 76.4 11 0.00023 37.4 7.9 69 281-353 137-213 (309)
86 PRK00694 4-hydroxy-3-methylbut 76.2 13 0.00028 39.7 8.6 70 310-385 73-169 (606)
87 PRK06015 keto-hydroxyglutarate 76.0 18 0.00039 33.5 8.7 91 280-382 14-105 (201)
88 PRK07114 keto-hydroxyglutarate 75.3 18 0.00039 34.0 8.7 92 280-382 25-120 (222)
89 PRK07259 dihydroorotate dehydr 74.1 29 0.00063 34.0 10.3 55 308-366 222-276 (301)
90 PF00724 Oxidored_FMN: NADH:fl 74.0 15 0.00032 37.0 8.3 40 310-352 281-320 (341)
91 cd07941 DRE_TIM_LeuA3 Desulfob 73.6 91 0.002 30.2 13.7 129 277-407 15-172 (273)
92 cd07943 DRE_TIM_HOA 4-hydroxy- 73.2 89 0.0019 30.0 15.0 128 277-409 17-164 (263)
93 TIGR01769 GGGP geranylgeranylg 73.0 25 0.00053 32.7 8.9 68 279-352 131-204 (205)
94 cd02810 DHOD_DHPD_FMN Dihydroo 72.9 17 0.00037 35.3 8.3 43 309-353 230-272 (289)
95 cd03174 DRE_TIM_metallolyase D 72.5 87 0.0019 29.7 13.1 125 278-407 15-167 (265)
96 TIGR00736 nifR3_rel_arch TIM-b 72.0 39 0.00085 32.0 10.1 65 284-352 150-219 (231)
97 PLN02321 2-isopropylmalate syn 71.7 85 0.0018 34.4 13.8 128 277-407 103-261 (632)
98 KOG2550 IMP dehydrogenase/GMP 71.4 20 0.00044 36.6 8.2 96 306-408 277-385 (503)
99 COG0106 HisA Phosphoribosylfor 70.6 72 0.0016 30.4 11.4 116 231-368 112-239 (241)
100 PRK11815 tRNA-dihydrouridine s 69.5 70 0.0015 32.0 12.0 80 281-366 150-246 (333)
101 COG0434 SgcQ Predicted TIM-bar 69.2 59 0.0013 30.9 10.3 120 301-420 124-256 (263)
102 PRK05718 keto-hydroxyglutarate 68.6 26 0.00057 32.7 8.1 109 280-405 25-134 (212)
103 TIGR01361 DAHP_synth_Bsub phos 68.5 47 0.001 32.0 10.1 93 282-382 75-168 (260)
104 cd02911 arch_FMN Archeal FMN-b 68.3 50 0.0011 31.2 10.1 65 283-354 153-221 (233)
105 PRK13398 3-deoxy-7-phosphohept 67.9 80 0.0017 30.6 11.5 93 282-382 77-170 (266)
106 TIGR01037 pyrD_sub1_fam dihydr 67.6 34 0.00075 33.5 9.2 40 310-353 224-263 (300)
107 PRK00278 trpC indole-3-glycero 67.0 58 0.0013 31.4 10.4 100 297-406 87-187 (260)
108 PRK05096 guanosine 5'-monophos 66.8 53 0.0012 32.9 10.1 94 309-409 139-245 (346)
109 PRK02048 4-hydroxy-3-methylbut 66.4 19 0.00041 38.7 7.3 72 310-385 69-165 (611)
110 PRK08673 3-deoxy-7-phosphohept 65.8 68 0.0015 32.2 10.8 93 282-382 143-236 (335)
111 PRK13396 3-deoxy-7-phosphohept 65.4 53 0.0011 33.2 10.0 97 277-382 147-244 (352)
112 PF01081 Aldolase: KDPG and KH 64.5 59 0.0013 30.0 9.4 108 280-404 18-126 (196)
113 cd07945 DRE_TIM_CMS Leptospira 64.1 1.5E+02 0.0032 29.0 12.7 127 277-407 14-168 (280)
114 TIGR01304 IMP_DH_rel_2 IMP deh 63.7 71 0.0015 32.5 10.7 40 307-351 175-214 (369)
115 cd00452 KDPG_aldolase KDPG and 63.1 56 0.0012 29.6 9.1 109 280-405 14-123 (190)
116 KOG2335 tRNA-dihydrouridine sy 62.3 98 0.0021 31.2 11.0 68 282-352 155-232 (358)
117 TIGR01305 GMP_reduct_1 guanosi 61.9 59 0.0013 32.6 9.4 94 309-409 138-244 (343)
118 cd03332 LMO_FMN L-Lactate 2-mo 61.8 79 0.0017 32.4 10.6 107 307-421 240-359 (383)
119 PLN02746 hydroxymethylglutaryl 61.7 1.9E+02 0.004 29.3 13.8 125 277-408 63-219 (347)
120 PRK11858 aksA trans-homoaconit 61.5 1.9E+02 0.0042 29.4 14.5 126 277-407 21-166 (378)
121 TIGR01302 IMP_dehydrog inosine 60.7 66 0.0014 33.7 10.2 93 309-408 253-358 (450)
122 PLN02925 4-hydroxy-3-methylbut 60.2 37 0.00081 37.2 8.2 73 309-385 137-234 (733)
123 TIGR02660 nifV_homocitr homoci 59.6 2E+02 0.0044 29.1 14.4 126 277-407 18-163 (365)
124 PRK07807 inosine 5-monophospha 59.6 78 0.0017 33.4 10.5 93 309-408 256-361 (479)
125 cd04738 DHOD_2_like Dihydrooro 59.2 47 0.001 33.1 8.5 44 309-354 267-310 (327)
126 PF00682 HMGL-like: HMGL-like 58.8 73 0.0016 29.8 9.4 126 278-407 10-158 (237)
127 PF01729 QRPTase_C: Quinolinat 58.5 65 0.0014 28.9 8.4 87 310-407 68-156 (169)
128 TIGR01303 IMP_DH_rel_1 IMP deh 57.1 1.1E+02 0.0023 32.4 11.0 94 309-409 254-360 (475)
129 PRK06852 aldolase; Validated 56.6 55 0.0012 32.4 8.2 71 338-408 121-210 (304)
130 cd00739 DHPS DHPS subgroup of 56.6 1.8E+02 0.0039 27.9 11.7 96 277-384 19-130 (257)
131 PRK06843 inosine 5-monophospha 56.3 2.3E+02 0.0051 29.2 13.0 95 308-409 181-288 (404)
132 PLN02617 imidazole glycerol ph 55.6 1.5E+02 0.0032 31.9 11.9 64 308-377 470-536 (538)
133 TIGR00973 leuA_bact 2-isopropy 55.5 2.8E+02 0.0061 29.4 14.1 127 277-407 18-167 (494)
134 PLN02979 glycolate oxidase 55.3 1.6E+02 0.0035 29.9 11.4 96 306-409 209-310 (366)
135 PRK00915 2-isopropylmalate syn 55.3 2.9E+02 0.0063 29.5 14.5 127 277-407 21-170 (513)
136 PRK13957 indole-3-glycerol-pho 55.2 1.7E+02 0.0037 28.0 11.0 95 278-381 60-158 (247)
137 PRK09140 2-dehydro-3-deoxy-6-p 55.2 1.4E+02 0.0031 27.6 10.4 110 280-405 20-130 (206)
138 PRK12595 bifunctional 3-deoxy- 55.0 1.2E+02 0.0025 30.9 10.5 95 278-381 165-260 (360)
139 TIGR00742 yjbN tRNA dihydrouri 55.0 1.3E+02 0.0028 29.9 10.7 72 282-358 141-228 (318)
140 PRK13397 3-deoxy-7-phosphohept 54.9 1.1E+02 0.0025 29.3 9.8 91 283-381 66-157 (250)
141 PRK01033 imidazole glycerol ph 54.7 1.4E+02 0.003 28.7 10.6 47 302-352 178-225 (258)
142 COG2088 SpoVG Uncharacterized 54.4 23 0.0005 27.9 4.1 29 3-32 1-29 (95)
143 cd04740 DHOD_1B_like Dihydroor 54.4 2E+02 0.0044 27.9 12.0 57 308-368 219-275 (296)
144 cd04736 MDH_FMN Mandelate dehy 54.3 1.4E+02 0.003 30.3 10.9 107 308-424 224-343 (361)
145 KOG2367 Alpha-isopropylmalate 53.6 2.9E+02 0.0063 29.1 13.4 118 276-396 73-211 (560)
146 TIGR03217 4OH_2_O_val_ald 4-hy 53.4 2.5E+02 0.0054 28.1 14.9 124 277-405 19-162 (333)
147 COG1167 ARO8 Transcriptional r 53.4 54 0.0012 34.4 8.1 93 282-378 165-264 (459)
148 PRK11613 folP dihydropteroate 53.1 1.2E+02 0.0027 29.5 10.0 94 277-383 33-142 (282)
149 PRK08649 inosine 5-monophospha 53.0 1.2E+02 0.0026 30.9 10.2 94 308-409 175-288 (368)
150 PRK05692 hydroxymethylglutaryl 52.1 2.4E+02 0.0051 27.6 13.7 124 277-407 21-176 (287)
151 PRK05567 inosine 5'-monophosph 52.1 84 0.0018 33.2 9.4 108 295-409 241-363 (486)
152 PRK08185 hypothetical protein; 50.9 1.9E+02 0.0042 28.2 10.9 75 331-407 147-229 (283)
153 COG0119 LeuA Isopropylmalate/h 50.4 2.2E+02 0.0047 29.5 11.7 130 276-408 18-168 (409)
154 PRK07998 gatY putative fructos 50.3 2.6E+02 0.0055 27.4 12.2 66 312-382 66-138 (283)
155 TIGR03572 WbuZ glycosyl amidat 49.9 1.7E+02 0.0036 27.3 10.3 43 307-352 184-226 (232)
156 PRK07428 nicotinate-nucleotide 49.8 1.5E+02 0.0032 29.1 10.0 89 310-409 184-274 (288)
157 cd00331 IGPS Indole-3-glycerol 48.6 2.2E+02 0.0048 26.2 12.1 72 305-381 57-128 (217)
158 PRK02083 imidazole glycerol ph 48.5 38 0.00082 32.3 5.6 66 307-377 184-251 (253)
159 PF01070 FMN_dh: FMN-dependent 48.2 67 0.0015 32.5 7.6 93 307-409 212-312 (356)
160 PRK11197 lldD L-lactate dehydr 48.2 1.5E+02 0.0032 30.4 10.0 92 308-409 233-332 (381)
161 PRK05458 guanosine 5'-monophos 47.9 1.3E+02 0.0029 30.0 9.4 89 312-409 131-233 (326)
162 cd04731 HisF The cyclase subun 47.4 2.3E+02 0.005 26.5 10.9 44 307-353 180-223 (243)
163 PLN02535 glycolate oxidase 47.2 2.7E+02 0.0058 28.4 11.6 95 307-409 210-310 (364)
164 PRK07896 nicotinate-nucleotide 47.0 1.6E+02 0.0035 28.9 9.7 91 309-409 187-277 (289)
165 COG0113 HemB Delta-aminolevuli 46.4 1.7E+02 0.0036 28.9 9.4 127 227-379 174-316 (330)
166 TIGR00977 LeuA_rel 2-isopropyl 45.3 3.8E+02 0.0082 28.8 13.0 127 277-405 18-173 (526)
167 PLN02493 probable peroxisomal 44.5 2.5E+02 0.0053 28.7 10.9 95 307-409 211-311 (367)
168 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.3 3E+02 0.0066 26.6 14.2 128 278-409 17-172 (275)
169 PF00218 IGPS: Indole-3-glycer 44.1 1.7E+02 0.0036 28.2 9.2 95 278-381 67-165 (254)
170 COG1954 GlpP Glycerol-3-phosph 43.8 77 0.0017 28.5 6.2 56 289-348 114-169 (181)
171 cd04732 HisA HisA. Phosphorib 43.4 2.4E+02 0.0051 26.2 10.2 44 305-352 175-218 (234)
172 COG0042 tRNA-dihydrouridine sy 43.3 49 0.0011 33.0 5.7 57 307-365 184-240 (323)
173 PRK14024 phosphoribosyl isomer 42.1 2.4E+02 0.0051 26.7 10.0 49 301-353 171-222 (241)
174 PRK08195 4-hyroxy-2-oxovalerat 41.4 3.8E+02 0.0082 26.9 15.2 126 277-407 20-165 (337)
175 PRK13259 regulatory protein Sp 40.7 59 0.0013 26.2 4.6 28 3-31 1-28 (94)
176 cd00947 TBP_aldolase_IIB Tagat 40.2 1.1E+02 0.0023 29.9 7.3 64 313-381 62-132 (276)
177 PRK12344 putative alpha-isopro 40.2 5E+02 0.011 27.8 14.5 129 277-407 22-179 (524)
178 COG3010 NanE Putative N-acetyl 38.8 3.2E+02 0.0068 25.6 9.5 40 308-351 169-208 (229)
179 TIGR01306 GMP_reduct_2 guanosi 38.4 2.6E+02 0.0057 27.9 9.8 116 286-409 97-230 (321)
180 cd07948 DRE_TIM_HCS Saccharomy 37.6 3.8E+02 0.0082 25.8 13.3 126 277-407 17-162 (262)
181 TIGR01334 modD putative molybd 37.1 3E+02 0.0066 26.8 9.9 90 310-409 177-266 (277)
182 COG0403 GcvP Glycine cleavage 36.8 64 0.0014 33.3 5.2 123 281-409 149-283 (450)
183 KOG0538 Glycolate oxidase [Ene 36.0 4.5E+02 0.0098 26.2 10.6 114 305-427 208-335 (363)
184 PF04026 SpoVG: SpoVG; InterP 36.0 50 0.0011 26.0 3.5 29 3-32 1-29 (84)
185 PRK06096 molybdenum transport 35.5 3.4E+02 0.0074 26.6 10.0 90 310-409 178-267 (284)
186 PRK00748 1-(5-phosphoribosyl)- 35.3 77 0.0017 29.5 5.4 43 307-352 177-219 (233)
187 PRK08227 autoinducer 2 aldolas 35.2 1.9E+02 0.0042 27.9 8.1 63 346-408 107-180 (264)
188 PRK05848 nicotinate-nucleotide 34.7 3.2E+02 0.0069 26.6 9.6 90 309-409 169-260 (273)
189 PF03102 NeuB: NeuB family; I 34.5 2.1E+02 0.0045 27.3 8.1 35 280-315 54-88 (241)
190 cd04731 HisF The cyclase subun 34.4 1.2E+02 0.0026 28.5 6.7 62 306-374 57-118 (243)
191 PRK06801 hypothetical protein; 34.3 1.7E+02 0.0036 28.8 7.6 64 313-381 67-137 (286)
192 PRK06106 nicotinate-nucleotide 34.3 2.6E+02 0.0055 27.4 8.8 90 309-410 181-270 (281)
193 TIGR01362 KDO8P_synth 3-deoxy- 34.3 1.9E+02 0.0041 27.9 7.7 97 278-382 55-152 (258)
194 PRK13307 bifunctional formalde 33.9 5.4E+02 0.012 26.4 13.5 110 280-394 183-296 (391)
195 PRK08247 cystathionine gamma-s 33.9 4.8E+02 0.01 26.2 11.3 95 283-382 78-174 (366)
196 PF02310 B12-binding: B12 bind 32.9 2.4E+02 0.0051 22.9 7.5 48 335-382 40-89 (121)
197 PRK09250 fructose-bisphosphate 32.9 2.1E+02 0.0046 28.8 8.1 78 338-416 152-247 (348)
198 cd02809 alpha_hydroxyacid_oxid 32.4 4.8E+02 0.01 25.4 11.3 94 308-409 160-259 (299)
199 PRK13399 fructose-1,6-bisphosp 32.2 1.8E+02 0.004 29.3 7.6 52 323-377 76-139 (347)
200 PRK01130 N-acetylmannosamine-6 32.0 3.1E+02 0.0067 25.3 8.9 93 280-381 21-126 (221)
201 TIGR03586 PseI pseudaminic aci 31.9 1.8E+02 0.004 29.0 7.6 28 288-315 82-109 (327)
202 cd04723 HisA_HisF Phosphoribos 31.9 4.3E+02 0.0094 24.7 9.9 98 231-351 114-217 (233)
203 cd00954 NAL N-Acetylneuraminic 31.6 4.9E+02 0.011 25.2 10.7 124 225-381 52-188 (288)
204 PRK06176 cystathionine gamma-s 31.5 3.1E+02 0.0067 27.8 9.5 89 289-382 82-172 (380)
205 PRK05198 2-dehydro-3-deoxyphos 31.4 2.2E+02 0.0048 27.5 7.7 97 278-382 63-160 (264)
206 TIGR01306 GMP_reduct_2 guanosi 31.4 5.3E+02 0.012 25.7 10.7 110 289-406 51-165 (321)
207 TIGR02151 IPP_isom_2 isopenten 31.2 5.4E+02 0.012 25.6 11.4 49 302-353 157-210 (333)
208 cd04732 HisA HisA. Phosphorib 31.2 2.3E+02 0.005 26.2 8.0 20 362-381 147-166 (234)
209 cd04737 LOX_like_FMN L-Lactate 31.1 5.7E+02 0.012 25.8 11.7 93 308-408 209-307 (351)
210 TIGR02708 L_lactate_ox L-lacta 31.0 5.2E+02 0.011 26.3 10.8 108 306-421 214-334 (367)
211 TIGR03392 FeS_syn_CsdA cystein 30.9 3.4E+02 0.0073 27.4 9.7 99 282-381 88-194 (398)
212 COG0352 ThiE Thiamine monophos 30.9 3.2E+02 0.0069 25.5 8.6 75 323-407 8-89 (211)
213 TIGR03569 NeuB_NnaB N-acetylne 30.4 1.6E+02 0.0035 29.4 7.0 87 280-375 74-160 (329)
214 cd00384 ALAD_PBGS Porphobilino 30.3 3.5E+02 0.0077 26.8 9.0 127 227-379 161-303 (314)
215 cd00381 IMPDH IMPDH: The catal 30.0 5.6E+02 0.012 25.4 13.2 93 309-408 123-228 (325)
216 PRK13587 1-(5-phosphoribosyl)- 29.8 4.8E+02 0.01 24.5 10.4 99 231-351 113-219 (234)
217 cd02812 PcrB_like PcrB_like pr 29.7 3.5E+02 0.0077 25.4 8.7 70 278-353 131-204 (219)
218 PF01408 GFO_IDH_MocA: Oxidore 29.7 3E+02 0.0065 22.1 9.8 66 312-381 54-120 (120)
219 PRK06559 nicotinate-nucleotide 29.6 3.9E+02 0.0085 26.3 9.3 89 310-410 185-273 (290)
220 TIGR00737 nifR3_yhdG putative 29.2 89 0.0019 30.9 4.9 44 307-353 179-222 (319)
221 PRK09195 gatY tagatose-bisphos 28.8 2.1E+02 0.0046 28.0 7.3 63 312-377 66-131 (284)
222 PLN03228 methylthioalkylmalate 28.6 7.4E+02 0.016 26.4 12.8 129 277-407 101-260 (503)
223 PLN02274 inosine-5'-monophosph 28.5 4E+02 0.0086 28.4 9.9 116 286-408 251-382 (505)
224 TIGR02129 hisA_euk phosphoribo 28.0 5.5E+02 0.012 24.7 10.4 111 232-352 117-232 (253)
225 PRK12737 gatY tagatose-bisphos 27.9 2.2E+02 0.0048 27.8 7.3 65 312-381 66-137 (284)
226 PRK14040 oxaloacetate decarbox 27.9 8.2E+02 0.018 26.7 13.7 124 278-407 23-176 (593)
227 PRK09389 (R)-citramalate synth 27.8 7.5E+02 0.016 26.2 14.4 126 277-407 19-164 (488)
228 PLN03033 2-dehydro-3-deoxyphos 27.8 2.8E+02 0.0061 27.2 7.7 96 278-381 69-165 (290)
229 COG0134 TrpC Indole-3-glycerol 27.8 3.7E+02 0.0081 25.8 8.6 95 278-381 65-163 (254)
230 COG0157 NadC Nicotinate-nucleo 27.2 4.9E+02 0.011 25.4 9.3 92 311-413 177-269 (280)
231 PRK10874 cysteine sulfinate de 27.1 3.8E+02 0.0083 27.0 9.3 100 282-382 91-198 (401)
232 PRK09283 delta-aminolevulinic 26.9 3.9E+02 0.0084 26.6 8.6 128 227-380 169-312 (323)
233 cd00377 ICL_PEPM Members of th 26.8 2.7E+02 0.0058 26.4 7.6 41 280-326 158-200 (243)
234 PRK10867 signal recognition pa 26.8 2.8E+02 0.0061 28.9 8.2 83 296-381 131-223 (433)
235 PRK13384 delta-aminolevulinic 26.7 3.9E+02 0.0085 26.6 8.6 127 227-379 171-312 (322)
236 COG1103 Archaea-specific pyrid 26.6 34 0.00073 33.2 1.3 55 355-409 167-226 (382)
237 PRK12331 oxaloacetate decarbox 26.5 7.6E+02 0.017 25.8 13.7 128 278-409 22-177 (448)
238 PF00128 Alpha-amylase: Alpha 26.3 85 0.0018 30.0 4.2 34 346-380 38-71 (316)
239 PF04131 NanE: Putative N-acet 26.2 97 0.0021 28.4 4.1 41 307-351 132-172 (192)
240 COG0041 PurE Phosphoribosylcar 26.1 3.1E+02 0.0068 24.3 7.0 94 325-424 8-103 (162)
241 PF01116 F_bP_aldolase: Fructo 26.0 2.2E+02 0.0049 27.8 7.0 66 311-381 64-136 (287)
242 cd00288 Pyruvate_Kinase Pyruva 25.9 3.3E+02 0.0072 28.8 8.6 141 279-423 172-335 (480)
243 COG0520 csdA Selenocysteine ly 25.9 2.5E+02 0.0054 28.9 7.7 98 282-381 94-199 (405)
244 PRK06512 thiamine-phosphate py 25.7 1.8E+02 0.0039 27.3 6.0 46 336-381 30-78 (221)
245 cd06660 Aldo_ket_red Aldo-keto 25.6 5.8E+02 0.013 24.1 10.4 84 295-381 111-199 (285)
246 PTZ00300 pyruvate kinase; Prov 25.6 5.7E+02 0.012 26.9 10.1 128 293-422 157-307 (454)
247 PRK08385 nicotinate-nucleotide 25.5 6.3E+02 0.014 24.6 9.9 89 311-409 172-262 (278)
248 PRK05826 pyruvate kinase; Prov 25.4 5E+02 0.011 27.4 9.8 123 279-405 171-312 (465)
249 COG0107 HisF Imidazoleglycerol 25.1 1.2E+02 0.0027 28.7 4.6 134 231-377 111-253 (256)
250 cd04823 ALAD_PBGS_aspartate_ri 25.0 5.4E+02 0.012 25.6 9.2 127 227-379 166-308 (320)
251 COG0673 MviM Predicted dehydro 24.9 2E+02 0.0043 28.2 6.6 48 335-384 81-128 (342)
252 PF11380 DUF3184: Protein of u 24.7 5.6E+02 0.012 27.7 9.7 100 276-376 431-542 (691)
253 cd02067 B12-binding B12 bindin 24.4 2.5E+02 0.0055 22.9 6.2 49 334-382 38-89 (119)
254 PRK12738 kbaY tagatose-bisphos 24.3 2.9E+02 0.0063 27.1 7.3 65 312-381 66-137 (286)
255 cd04729 NanE N-acetylmannosami 24.3 5.6E+02 0.012 23.5 10.0 91 283-381 28-130 (219)
256 PRK08610 fructose-bisphosphate 24.1 3.2E+02 0.0069 26.8 7.6 75 331-407 154-234 (286)
257 TIGR01858 tag_bisphos_ald clas 24.1 3E+02 0.0064 26.9 7.4 66 311-381 63-135 (282)
258 TIGR01496 DHPS dihydropteroate 24.0 6.1E+02 0.013 24.2 9.5 52 323-383 76-127 (257)
259 PLN02460 indole-3-glycerol-pho 23.9 4.1E+02 0.0089 26.7 8.4 95 278-381 138-237 (338)
260 PRK07709 fructose-bisphosphate 23.7 3.8E+02 0.0083 26.2 8.0 67 310-377 65-134 (285)
261 PF00490 ALAD: Delta-aminolevu 23.3 7.6E+02 0.016 24.7 9.9 105 227-348 171-292 (324)
262 PRK09016 quinolinate phosphori 23.0 5.3E+02 0.011 25.4 8.8 91 309-412 196-286 (296)
263 PLN02446 (5-phosphoribosyl)-5- 23.0 6.9E+02 0.015 24.1 10.3 101 231-345 123-229 (262)
264 PRK12737 gatY tagatose-bisphos 22.9 3.7E+02 0.008 26.3 7.8 75 331-407 153-233 (284)
265 PRK08185 hypothetical protein; 22.9 3.9E+02 0.0084 26.2 7.9 61 312-377 60-125 (283)
266 TIGR02026 BchE magnesium-proto 22.8 9.1E+02 0.02 25.5 15.2 124 279-405 222-372 (497)
267 PRK09197 fructose-bisphosphate 22.8 3E+02 0.0066 27.8 7.2 67 311-381 83-168 (350)
268 COG0106 HisA Phosphoribosylfor 22.6 3.3E+02 0.0071 26.0 7.1 102 308-412 86-204 (241)
269 smart00642 Aamy Alpha-amylase 22.6 83 0.0018 28.0 3.0 33 347-380 57-89 (166)
270 COG1830 FbaB DhnA-type fructos 22.6 2.7E+02 0.0057 27.0 6.5 53 360-412 129-192 (265)
271 cd01572 QPRTase Quinolinate ph 22.5 3.9E+02 0.0084 25.8 7.8 88 310-409 170-257 (268)
272 cd08183 Fe-ADH2 Iron-containin 22.5 4.5E+02 0.0097 26.6 8.7 61 321-382 23-83 (374)
273 PF00977 His_biosynth: Histidi 22.3 4.3E+02 0.0092 24.7 7.9 99 232-351 111-218 (229)
274 cd04824 eu_ALAD_PBGS_cysteine_ 22.2 7.1E+02 0.015 24.8 9.4 128 227-379 165-309 (320)
275 cd02811 IDI-2_FMN Isopentenyl- 22.2 7.8E+02 0.017 24.4 11.8 49 302-353 156-209 (326)
276 PRK00748 1-(5-phosphoribosyl)- 21.9 3.1E+02 0.0067 25.4 6.9 106 308-415 85-206 (233)
277 COG2089 SpsE Sialic acid synth 21.8 7.8E+02 0.017 24.7 9.6 80 288-376 95-175 (347)
278 TIGR01361 DAHP_synth_Bsub phos 21.8 7.2E+02 0.016 23.8 10.3 137 227-401 75-224 (260)
279 PF04131 NanE: Putative N-acet 21.7 1.8E+02 0.004 26.6 5.0 47 334-381 53-99 (192)
280 PRK09206 pyruvate kinase; Prov 21.6 7.6E+02 0.017 26.1 10.2 141 279-423 170-334 (470)
281 PRK13753 dihydropteroate synth 21.3 7.6E+02 0.017 24.1 9.5 94 277-383 20-128 (279)
282 PRK08610 fructose-bisphosphate 21.0 4.8E+02 0.01 25.6 8.1 67 312-381 67-140 (286)
283 PRK13802 bifunctional indole-3 21.0 7.5E+02 0.016 27.6 10.4 98 278-381 69-167 (695)
284 PRK12857 fructose-1,6-bisphosp 20.9 3.7E+02 0.0079 26.3 7.3 65 312-381 66-137 (284)
285 TIGR02321 Pphn_pyruv_hyd phosp 20.9 5.5E+02 0.012 25.2 8.6 44 280-326 164-209 (290)
286 PTZ00066 pyruvate kinase; Prov 20.6 5.2E+02 0.011 27.6 8.8 124 279-405 207-348 (513)
287 PRK08960 hypothetical protein; 20.6 3.2E+02 0.0069 27.5 7.2 99 282-381 102-205 (387)
288 PRK06806 fructose-bisphosphate 20.4 4.9E+02 0.011 25.4 8.1 64 313-381 67-137 (281)
289 TIGR01329 cysta_beta_ly_E cyst 20.4 6.5E+02 0.014 25.4 9.4 93 284-382 74-169 (378)
290 COG1105 FruK Fructose-1-phosph 20.3 8.6E+02 0.019 24.2 9.9 92 282-382 117-222 (310)
291 cd07947 DRE_TIM_Re_CS Clostrid 20.3 8E+02 0.017 23.8 9.8 99 279-381 18-135 (279)
292 TIGR00167 cbbA ketose-bisphosp 20.3 4.7E+02 0.01 25.6 7.9 66 309-377 64-134 (288)
293 PRK12457 2-dehydro-3-deoxyphos 20.2 4.5E+02 0.0097 25.7 7.5 96 278-381 69-165 (281)
294 PRK07084 fructose-bisphosphate 20.1 4.5E+02 0.0097 26.2 7.8 66 313-381 76-148 (321)
295 PRK06543 nicotinate-nucleotide 20.0 6.4E+02 0.014 24.6 8.7 90 310-411 181-270 (281)
296 TIGR03572 WbuZ glycosyl amidat 20.0 4.7E+02 0.01 24.2 7.7 62 307-376 61-123 (232)
No 1
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=3.6e-93 Score=723.81 Aligned_cols=433 Identities=73% Similarity=1.144 Sum_probs=407.0
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|+|++|++|+|+||+|+|||+|+|+|++|++ ++++|+|+|||.+|+.+++|+++. |.|+++..++..+++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~-~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG 80 (439)
T PTZ00081 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIG 80 (439)
T ss_pred cEEEEEEEEEEecCCCCceEEEEEEECCCCE-EEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999977 999999999999999999998865 99999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC--CcceeeeeeEEe
Q 043137 82 KDPTEQTAIDNYMVQQ-LDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN--KNLVLPVPAFNV 158 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~-l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~--~~~~vp~~~~~~ 158 (445)
+|+.+|+.||+.|. . +++++|-|+|+++.+|.||++|||||+|++.|+.+|+|||+|||++.|. .+..+|+|++++
T Consensus 81 ~d~~dq~~iD~~l~-~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~ni 159 (439)
T PTZ00081 81 KDVTDQKKLDKLMV-EQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNV 159 (439)
T ss_pred CChhhHHHHHHHHH-HhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEe
Confidence 99999999999999 7 9999887899999999999999999999999999999999999544475 345799999999
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++||.|+++.+++||||++|.++.++.++++++.++|+++|+.|+.|+|...+.++++|+|.|+++++++.|+.+++|++
T Consensus 160 inGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~ 239 (439)
T PTZ00081 160 INGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIK 239 (439)
T ss_pred ccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887778899999999999999999999999999
Q ss_pred HhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTS 317 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~ 317 (445)
++||++++.|++|++++++|+..+ +|+++|++|.+++|+.+|++|++++|.+++++|++.||||||+++|+++|++|++
T Consensus 240 ~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~ 319 (439)
T PTZ00081 240 KAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTA 319 (439)
T ss_pred HcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHH
Confidence 999987899999999999996432 7998776655455667999999999999999999999999999999999999999
Q ss_pred HhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhh
Q 043137 318 EVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVG 397 (445)
Q Consensus 318 ~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a 397 (445)
++++++||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||||
T Consensus 320 ~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadLAVa 399 (439)
T PTZ00081 320 AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVG 399 (439)
T ss_pred hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHHHHH
Confidence 99656999999987889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccc
Q 043137 398 LATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 437 (445)
Q Consensus 398 ~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~ 437 (445)
++++|+|.|+|+|+||++||||||||||+|++++.|.+.+
T Consensus 400 ~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 400 LGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred cCCCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999998887753
No 2
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-92 Score=660.28 Aligned_cols=429 Identities=76% Similarity=1.167 Sum_probs=414.6
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|.|.+|++|+|+||+|+|||+|+++|+.|++ ++++|+|+|||.||+.+++|++.. |.|+++..++..|++.|+|.|++
T Consensus 1 m~~~kv~aR~I~dSRGnPTVEVdL~T~~G~f-RaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~ 79 (433)
T KOG2670|consen 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIK 79 (433)
T ss_pred CCceeeehhhhhhcCCCCceeEEEEecCcce-EeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHc
Confidence 4455699999999999999999999999965 899999999999999999999855 99999999999999999999999
Q ss_pred C--CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC-cceeeeeeEEe
Q 043137 82 K--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-NLVLPVPAFNV 158 (445)
Q Consensus 82 ~--d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~-~~~vp~~~~~~ 158 (445)
+ |+.+|++||+.|. .++++.| .+.+|.+|+.+||+|++.+.|-..|+|||+++..+.|.. ...+|+|+|++
T Consensus 80 ~~~dv~~Q~~iD~~mi-~LDGTeN-----KsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNV 153 (433)
T KOG2670|consen 80 KNLDVTDQKAIDNFMI-ELDGTEN-----KSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNV 153 (433)
T ss_pred cCCChhhHHHHHHHHH-hccCCcc-----cccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceee
Confidence 8 9999999999999 9999988 689999999999999999999999999999999888877 46799999999
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++||.|+++++.+||+|++|.++.+++++++++.++|.++|..+|.|||.....||++|||.|++.+..+.|+++.+|++
T Consensus 154 lNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~ 233 (433)
T KOG2670|consen 154 LNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAIN 233 (433)
T ss_pred ecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
.+||++++.|++|+++++||.++ +|+++|+.|+.++.+.+|.+++.++|.+++.+||+..|||||+.|||++|.++...
T Consensus 234 kagyt~kikIgmDvAaseF~~dg-kYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~ 312 (433)
T KOG2670|consen 234 KAGYTGKVKIGMDVAASEFYKDG-KYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKE 312 (433)
T ss_pred hcCCCCceEEEEeechhhhhcCC-cccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhc
Confidence 99998899999999999999888 89999999999999999999999999999999999999999999999999999988
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
.. ++|+||++.+|++.++++.++.++|+.+.+|++|+|++||+++++.+|+++|+.+|++|+++||+|++++||.|++
T Consensus 313 ~~--iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl 390 (433)
T KOG2670|consen 313 VG--IQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGL 390 (433)
T ss_pred cc--eEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhh
Confidence 87 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 399 ~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
++.++|.|.|||+||++|||+||||||||++.++|+|.+||+|
T Consensus 391 ~tgqIKtGApcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 391 GTGQIKTGAPCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred ccceeecCCCchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 9999999999999999999999999999999999999999998
No 3
>PLN00191 enolase
Probab=100.00 E-value=1.8e-90 Score=706.30 Aligned_cols=431 Identities=84% Similarity=1.228 Sum_probs=406.1
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
|+|++|++|+|+||+|+|||+|+|+|++|.+ ++++|+|+|||.+|+.+++|+++.|.|+++..+++.|++.|+|.|+|+
T Consensus 26 ~~I~~v~~r~ildsrG~PtVeveV~~~~G~~-~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v~~~ia~~LiG~ 104 (457)
T PLN00191 26 ATITKVKARQIIDSRGNPTVEVDLHTSKGMF-RAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNVNEIIAPALIGM 104 (457)
T ss_pred CeeeEEEEEEEEcCCCCeEEEEEEEECCCCE-EEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHHHHHHHHHHcCC
Confidence 4999999999999999999999999999976 999999999999999999998877999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
|+.||+.||+.|. .+++++| ++.+|.||+.|||||+|+++|+.+|+|||+||+.+.|..+.++|+|++++++||
T Consensus 105 ~~~dq~~iD~~l~-~ldgt~n-----k~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~niinGG 178 (457)
T PLN00191 105 DPTDQTQIDNFML-ELDGTPN-----KGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGG 178 (457)
T ss_pred ChhhHHHHHHHHH-HccCCCC-----ccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEEeecCc
Confidence 9999999999999 8999887 689999999999999999999999999999994333866778999999999999
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
.|+++.+++||||++|.++.+++++++++.++|+++|+.|+.|+|...+.++|+|+|.|+++++++.|+.+++|++++||
T Consensus 179 ~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~~eal~ll~eAi~~ag~ 258 (457)
T PLN00191 179 SHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGY 258 (457)
T ss_pred cccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCHHHHHHHHHHHHHHcCC
Confidence 99988999999999999999999999999999999999999999887788999999999999999999999999999999
Q ss_pred CCCeEEEEecccccccc-CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCC
Q 043137 243 TGKVVIGMDVAASEFYG-SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGE 321 (445)
Q Consensus 243 ~~~i~l~vD~~a~~~~~-~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~ 321 (445)
++++.|++|+|++++|+ ++ +|+++|+++.++.+..+|++++++++.+++++|++.||||||+++|+++|++|+++..
T Consensus 259 ~~~i~i~lD~Aase~~~~~~-~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~- 336 (457)
T PLN00191 259 TGKIKIGMDVAASEFYTKDK-KYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLED- 336 (457)
T ss_pred CCceEEEeehhhhhhcccCC-ceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCC-
Confidence 77899999999999997 55 7988765544444456899999999999999999999999999999999999999976
Q ss_pred CceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCC
Q 043137 322 KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 322 ~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
+||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||+|+.++
T Consensus 337 -ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Adlava~~~~ 415 (457)
T PLN00191 337 -VQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATG 415 (457)
T ss_pred -CcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHHHHHHhCCC
Confidence 9999999977899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCCCC
Q 043137 402 QIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPVE 443 (445)
Q Consensus 402 ~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~~~ 443 (445)
+++.|.|+|+||++||||||||||+|++.+.|.+..|+.++|
T Consensus 416 ~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~~~ 457 (457)
T PLN00191 416 QIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKPVW 457 (457)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccCCC
Confidence 999999999999999999999999999999999999999876
No 4
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-90 Score=663.29 Aligned_cols=417 Identities=60% Similarity=0.937 Sum_probs=400.8
Q ss_pred CceEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhc
Q 043137 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALA 80 (445)
Q Consensus 1 ~~mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~Li 80 (445)
|+ +|++|.+|+|+||+|+|||+|+|+|++|..|++++|+|+|||.+|+.++||++..|.|+++..+++.+++.|+|.|+
T Consensus 1 m~-~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~Li 79 (423)
T COG0148 1 MS-AIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALI 79 (423)
T ss_pred Cc-ccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHc
Confidence 55 89999999999999999999999999999999999999999999999999999789999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeec
Q 043137 81 GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVIN 160 (445)
Q Consensus 81 G~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~ 160 (445)
|.|+.||..||+.|. .+++++| ++.+|.||+.|||||+..++|..+++|||++|| |.....+|+|++++++
T Consensus 80 G~da~dQ~~ID~~li-elDGT~N-----ks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~Nvin 150 (423)
T COG0148 80 GLDATDQALIDSLLI-ELDGTEN-----KSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVIN 150 (423)
T ss_pred CCCcccHHHHHHHHH-HccCCCc-----ccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---Cccccccccceeeeec
Confidence 999999999999999 9999999 799999999999999999999999999999999 8766789999999999
Q ss_pred CcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHh
Q 043137 161 GGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240 (445)
Q Consensus 161 gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~ 240 (445)
||.|+.+.+++||||++|.++.++.|+++++.++|+++|+.|+.| |.... +||+|+|.|++...++.|+.+.+|++++
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~~t~-vGDEGgfAP~l~~~eeald~i~~Aie~a 228 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GLSTG-VGDEGGFAPNLKSNEEALDILVEAIEEA 228 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Ccccc-ccCCcccCCCCCccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988 76544 9999999999999999999999999999
Q ss_pred CCCC--CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 241 GYTG--KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 241 g~~~--~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
|+++ ++.|++||+++++|+++ +|.++ +..+|++|++++|.+++++|||..|||||..+||++|++|.+.
T Consensus 229 gy~~g~~i~~alD~Aasefy~~~-~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~ 299 (423)
T COG0148 229 GYEPGEDIALALDVAASEFYKDG-KYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKR 299 (423)
T ss_pred CCCCCcceeeeehhhhhhhccCC-eeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHh
Confidence 9983 69999999999999988 58875 3578999999999999999999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
++.++.|+||++++||++.+++.++.+++|.+.||++|+|++||+++.+.+|+.+|+.++++|+++||+|++++|||||+
T Consensus 300 ~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~ 379 (423)
T COG0148 300 LGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVAT 379 (423)
T ss_pred hCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCchhHHHHHHHHHHHHHhCcccccccccc
Q 043137 399 ATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438 (445)
Q Consensus 399 ~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~ 438 (445)
+++|+|.|.|+|+||++|||||||||++|++.+.|.+..+
T Consensus 380 ~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~y~g~~~ 419 (423)
T COG0148 380 NAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIKE 419 (423)
T ss_pred CCCeeecCCCcchhHHHHHHHHHHHHHHhhhccccCChHh
Confidence 9999999999999999999999999999999999988763
No 5
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=1.8e-88 Score=693.62 Aligned_cols=418 Identities=58% Similarity=0.915 Sum_probs=392.5
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAG 81 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG 81 (445)
|+|++|++|+|+||+|+|||+|+|+|++|++|++++|+|+|||.+|+.+++|+++. |.|+++..+++.|++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~LiG 81 (425)
T PRK00077 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALIG 81 (425)
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999998765 99999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecC
Q 043137 82 KDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVING 161 (445)
Q Consensus 82 ~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 161 (445)
+||.+|++||+.|. .++++.+ ++.+|.+|++|||||+||+.||.+|+|||+||| |..++++|+|+|++++|
T Consensus 82 ~d~~d~~~id~~l~-~ldgt~~-----~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~G 152 (425)
T PRK00077 82 LDALDQRAIDKAMI-ELDGTPN-----KSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIING 152 (425)
T ss_pred CChhhHHHHHHHHH-HhhCccc-----cCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEcc
Confidence 99999999999999 7887766 456778999999999999999999999999999 87667899999999999
Q ss_pred cccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC
Q 043137 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241 (445)
Q Consensus 162 g~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g 241 (445)
|.|+.+++++||+|++|.+..+++++++++.++|+++|..++.| |. ..+++++|+|.|++++++++|+++++|++++|
T Consensus 153 G~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag 230 (425)
T PRK00077 153 GAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAG 230 (425)
T ss_pred cccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhc
Confidence 99988888999999999999999999999999999999988877 64 46799999999999999999999999999999
Q ss_pred CC-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh
Q 043137 242 YT-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV 319 (445)
Q Consensus 242 ~~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~ 319 (445)
|+ + ++.|++|+|++++|+++ +|+++ ++.||++++++++.+++++|++.||||||+++|+++|++|++++
T Consensus 231 ~~~G~di~l~lD~aas~~~~~~-~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~ 301 (425)
T PRK00077 231 YKPGEDIALALDCAASEFYKDG-KYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKL 301 (425)
T ss_pred CCCCCceEEEEehhhhhcccCC-eeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhc
Confidence 98 4 79999999999999766 78874 46799999999999999999999999999999999999999999
Q ss_pred CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 320 GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 320 ~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+.++||++||++++++++++++++.+++|+++||++++||||++++++++|+++|+.++++|+++||++++++|||||++
T Consensus 302 ~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~ 381 (425)
T PRK00077 302 GDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATN 381 (425)
T ss_pred CCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhC
Confidence 55699999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccCC
Q 043137 400 TGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFRA 440 (445)
Q Consensus 400 ~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~~ 440 (445)
++|+|.|+|+++||++||||||||||+|+++++|.+ ..|+.
T Consensus 382 ~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 423 (425)
T PRK00077 382 AGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423 (425)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcccceecchhhccc
Confidence 999999999999999999999999999999999988 57764
No 6
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=2e-86 Score=675.34 Aligned_cols=405 Identities=66% Similarity=1.019 Sum_probs=380.3
Q ss_pred EEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcCCCCC
Q 043137 7 AVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPT 85 (445)
Q Consensus 7 ~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG~d~~ 85 (445)
+|++|+|+||+|+|||+|+|+|++|.+|+|++|+|+|+|.+|+.+++|+++. |+|+++..++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 4789999999999999999999999999999999999999999999998775 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccC
Q 043137 86 EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHA 165 (445)
Q Consensus 86 ~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~ 165 (445)
+|+.||+.|. .++++.+ .+.+|.+|++|||||+||+.||.+|+|||+||| |..+.++|+|++++++||.|+
T Consensus 81 dq~~id~~l~-~~dgt~~-----~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha 151 (408)
T cd03313 81 DQRAIDKLLI-ELDGTPN-----KSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHA 151 (408)
T ss_pred hHHHHHHHHH-HhcCCCc-----ccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccc
Confidence 9999999999 7888776 578889999999999999999999999999999 877778999999999999999
Q ss_pred CCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCC-
Q 043137 166 GNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG- 244 (445)
Q Consensus 166 ~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~- 244 (445)
.+++++||||++|.++.+++++++++.++|+++|+.|+.|.|....+++++|+|.|+++.++++|+++++|++++||++
T Consensus 152 ~~~~~iqe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G 231 (408)
T cd03313 152 GNKLDFQEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPG 231 (408)
T ss_pred cCccccccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCC
Confidence 8899999999999999999999999999999999888888766678999999999999999999999999999999873
Q ss_pred -CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 245 -KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 245 -~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
|+.|++|+|++++|+++ +|.+.+. .|+.||++++++++.+++++|++.|||||++++|+++|++|+++++.++
T Consensus 232 ~dv~i~lD~aas~~~~~~-~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~i 305 (408)
T cd03313 232 KKIAIALDVAASEFYDEG-KYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKI 305 (408)
T ss_pred CeEEEEEehhhhhhcccC-cceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCC
Confidence 89999999999999877 5665311 2578999999999999888999999999999999999999999984459
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcc
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQI 403 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~ 403 (445)
||+|||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||+|++++|+
T Consensus 306 pi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~i 385 (408)
T cd03313 306 QIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQI 385 (408)
T ss_pred eEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCcc
Confidence 99999987788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHH
Q 043137 404 KTGAPCRSERLAKYNQLLRIEEE 426 (445)
Q Consensus 404 ~~G~~~~~e~~~k~n~ll~i~~~ 426 (445)
|.|+|+|+||++||||||||||+
T Consensus 386 k~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 386 KTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred ccCCCcchHHHHHHHHHHHHhhC
Confidence 99999999999999999999985
No 7
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=1.5e-85 Score=672.02 Aligned_cols=417 Identities=58% Similarity=0.922 Sum_probs=385.6
Q ss_pred EEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC-CCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 5 I~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~-y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
|++|++|+|+||+|+|||+|+|+|++|.+|++++|+|+|||.+|+.+++|+++. |.|+++..++..+++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999999999999999999998765 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.||++||+.|. .++++.+ .+.+|.+|++||||||||+.||.+|+|||+||| |..++++|+|++++++||.
T Consensus 81 ~~d~~~id~~l~-~~d~t~~-----~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~ 151 (425)
T TIGR01060 81 AFDQREIDQIMI-ELDGTPN-----KSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGA 151 (425)
T ss_pred HHHHHHHHHHHH-hcCCcCC-----cchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccc
Confidence 999999999998 6777655 355778999999999999999999999999999 8777889999999999999
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
|+.++++++|+|++|.++.+++++++++.++|+++|..++.| |. ...++++|+|.|+++.+++.|+.++++++++|++
T Consensus 152 ~a~~~~~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~ 229 (425)
T TIGR01060 152 HADNNLDFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYK 229 (425)
T ss_pred cccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhc
Confidence 987788899999999999999999999999999999878776 54 4668999999999888999999999999998876
Q ss_pred -C-CeEEEEecccccccc--CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh
Q 043137 244 -G-KVVIGMDVAASEFYG--SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV 319 (445)
Q Consensus 244 -~-~i~l~vD~~a~~~~~--~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~ 319 (445)
+ ++.|++|+|++++|+ ++ +|++.. .+..+|++++++++.+++++|++.||||||+++|+++|++|++++
T Consensus 230 ~G~di~l~lD~aas~~~~~~~~-~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~ 302 (425)
T TIGR01060 230 PGEDVALALDCAASEFYDEEDG-KYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKEL 302 (425)
T ss_pred cCCceEEEEEccccccccccCc-eeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhc
Confidence 3 799999999999997 34 788741 234589999999988788999999999999999999999999999
Q ss_pred CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 320 GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 320 ~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
+.++||++||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||++++++|||||++
T Consensus 303 ~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~ 382 (425)
T TIGR01060 303 GDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALN 382 (425)
T ss_pred CCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhC
Confidence 54599999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCchhHHHHHHHHHHHHHhCccccccc-cccC
Q 043137 400 TGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG-AKFR 439 (445)
Q Consensus 400 ~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~-~~~~ 439 (445)
++++|.|+|+++||++||||||||||+|++.+.|.+ ..|+
T Consensus 383 ~~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~ 423 (425)
T TIGR01060 383 AGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNTFY 423 (425)
T ss_pred cCccccCCCchHHHHHHHHHHHHHHHHhcccceecchhccC
Confidence 999999999999999999999999999999999988 5776
No 8
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-76 Score=594.24 Aligned_cols=412 Identities=21% Similarity=0.337 Sum_probs=371.5
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCC--C-CCccHHHHHHHHHHhHhhhh
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD--Y-LGKGVSKAVSNVNAIIGPAL 79 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~--y-~~~~~~~a~~~i~~~l~p~L 79 (445)
++|++|++|+|+||+|+|||+|+|+|++|.+ +|+|+||| |+.++||+++. | .|+++..++. +.|+|.|
T Consensus 49 ~~I~~i~areIlDSrGnPTVev~v~l~~G~~----vPSGAStG--EA~elRDgd~~~~~g~gkgV~~Av~---~~i~p~L 119 (518)
T PTZ00378 49 DEIRALVHNEVLSPAGETVLRFTLELLNGME----VSSGALLS--PSHGERDGEADATLDPAEYTTEALQ---NSYFPRL 119 (518)
T ss_pred CeeeEEEEEEEEcCCCCeeEEEEEEECCCCE----ECCCCccc--ceeeeecCCcccccCCCccHHHHHH---hhhHHHH
Confidence 6899999999999999999999999999964 89999999 99999998864 6 6778888765 6799999
Q ss_pred cCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC----Ccceeeeee
Q 043137 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN----KNLVLPVPA 155 (445)
Q Consensus 80 iG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~----~~~~vp~~~ 155 (445)
+|+++.||++||+.|. .+++++| .+.+|.||+.|||||++.++|+..++|||+|||.++|. ....+|+|+
T Consensus 120 ig~~~~dQ~~iD~~Li-~lDGT~n-----ks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~ 193 (518)
T PTZ00378 120 LQLGARDQREFDSTLR-AALSTSP-----LANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLC 193 (518)
T ss_pred cCCChHhHHHHHHHHH-HhcCCCc-----ccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccc
Confidence 9999999999999999 8999998 68999999999999999999999999999999944332 245799999
Q ss_pred EEeecCcccCCCCcccceeeeccCCh--hcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCC-CCCccChHHHHHH
Q 043137 156 FNVINGGSHAGNKLAMQEFMILPVGA--SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGF-APNIQENKEGLEL 232 (445)
Q Consensus 156 ~~~~~gg~~~~~~~~~~e~~~~p~~~--~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~-~~~~~~~~~~l~~ 232 (445)
+++++||.|+++++++||||++|.++ .++.|+++++.++|+++++ | ..+.+|++||| .|++++.++.|++
T Consensus 194 ~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~-~~t~vGDEGGfaap~~~~~eeAL~l 266 (518)
T PTZ00378 194 ITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------S-HNSSVRSDGSLHWDGFANLTDAVKL 266 (518)
T ss_pred eEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------c-ccCccCCCcCcCCCCCCCHHHHHHH
Confidence 99999999999999999999999977 8999999999999999842 3 24789999999 6778889999999
Q ss_pred HHHHHHHhCCC-C-CeEEEEecccccc------------ccCCc-----eeeecccCCCCCCCCccCHHHHHHHHHHhhc
Q 043137 233 LNTAIAKAGYT-G-KVVIGMDVAASEF------------YGSDK-----TYDLNFKEENNDGSQKISGDALKDLYKSFIS 293 (445)
Q Consensus 233 l~~av~~~g~~-~-~i~l~vD~~a~~~------------~~~~~-----~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~ 293 (445)
+.+|++++||+ + +|.|++|++|+++ |+++| .|.+. + ....+|.+|+++||.++++
T Consensus 267 i~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~-----~~~~~t~~elieyy~~li~ 340 (518)
T PTZ00378 267 ATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P-----GEPDVTGDQLSEYVREQLQ 340 (518)
T ss_pred HHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C-----CCCCCCHHHHHHHHHHHHH
Confidence 99999999998 4 6999999999999 97631 47763 2 1233799999999999999
Q ss_pred cCC--eeeEECCCCcCCHHHHHHHHHHhCCCceEEeCccccc-CHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 294 DYP--IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVT-NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 294 ~~~--i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~-~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
+|| |.+|||||..+|+++|++|++++++++.|+||++++| ++..+++.++.++++.+.||++|+|+||++++++++|
T Consensus 341 kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA 420 (518)
T PTZ00378 341 AVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAV 420 (518)
T ss_pred HCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHH
Confidence 999 9999999999999999999999988899999999999 7999999999999999999999999999999999999
Q ss_pred HHcCCcEE---ecCCCCCChhhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccc--cccCCCCCC
Q 043137 371 KQAGWGVM---ASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG--AKFRAPVEP 444 (445)
Q Consensus 371 ~~~g~~~~---~~~~~~et~~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~--~~~~~~~~~ 444 (445)
+++|..+| ++|++| ++++++|||||++++|+|.|+|+|+||++||||||||||||+++..... ++|+.-.||
T Consensus 421 ~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IKtGa~~r~ER~aKyNqLlrIeeeLg~~~~l~~~~~~~~~~~~~ 497 (518)
T PTZ00378 421 GEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLCSGGLFSAHQCEVVSQLASRQDELTHSRMLAPEAPKFNRMDLP 497 (518)
T ss_pred HHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccccCCCccchHHHHHHHHHHHHHHhCcCCccCCCCCCCccccCC
Confidence 99999998 999988 6999999999999999999999999999999999999999987775544 345444444
No 9
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-67 Score=504.42 Aligned_cols=329 Identities=31% Similarity=0.467 Sum_probs=300.5
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCC-CCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~-~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
+|++|++|+|+||+|+|||+|+|+|++| +|++++|+.. ++ .|. .++..+++.+++.|+|.|+|+
T Consensus 3 ~I~~i~aReIlDSRGnPTVEveV~~~~g-~gra~vPSD~-------------d~~ry~-~gV~~AV~nVn~~Iap~LiG~ 67 (341)
T PRK08350 3 VIENIIGRVAVLRGGKYSVEVDVITDSG-FGRFAAPIDE-------------NPSLYI-AEAHRAVSEVDEIIGPELIGF 67 (341)
T ss_pred eeEEEEEEEEEcCCCCceEEEEEEECCc-EEEEEecCCC-------------Cccccc-chHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999 8999999831 22 266 789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
|+.+|+.||+.|. .+++++| .+.+|.||+.|||||++.++|+.+|+|||+||| |.....+|+|++++++||
T Consensus 68 d~~dQ~~ID~~mi-elDGT~n-----Ks~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiNGG 138 (341)
T PRK08350 68 DASEQELIDSYLW-EIDGTED-----FSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAEDE 138 (341)
T ss_pred CHHHHHHHHHHHH-hccCCcc-----ccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeecCC
Confidence 9999999999999 8999998 689999999999999999999999999999999 755567999999999997
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
++ |||++| .++++ +.++|+++|..||. +.++.|+.+.+|++++||
T Consensus 139 -------~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy 183 (341)
T PRK08350 139 -------NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGD 183 (341)
T ss_pred -------ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCC
Confidence 35 999998 68888 78999999988763 248899999999999999
Q ss_pred C-C-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC
Q 043137 243 T-G-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG 320 (445)
Q Consensus 243 ~-~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
+ + |+.+.+|+. ..+|++|++ +++++|||.+|| ||..+ ++|++|+++ .
T Consensus 184 ~~g~dv~~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~-g 232 (341)
T PRK08350 184 ELGLEVALGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAG-T 232 (341)
T ss_pred CccccEEEeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhc-C
Confidence 8 4 699999992 125778876 688999999999 99954 999999999 6
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcC
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLAT 400 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~ 400 (445)
+++.|+||++++|++.. +.++|+.+.||++|+|++||+++.+++|+++|+.+|++|++|||+|++++|||||+++
T Consensus 233 ~~iqiVGDDLfvTN~~~-----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa~~a 307 (341)
T PRK08350 233 HGVFIDGEYLFRTRNIL-----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRC 307 (341)
T ss_pred CceEEEcccccccChhH-----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHHhCC
Confidence 78999999999999654 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHhCccc
Q 043137 401 GQIKTGAPCRSERLAKYNQLLRIEEELGAEA 431 (445)
Q Consensus 401 ~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~ 431 (445)
+|+| +|+||++||||||||||+|++++
T Consensus 308 gqIK----~R~ER~aKyN~LlrIee~lg~~~ 334 (341)
T PRK08350 308 PAML----IHKDSVEKINELNRIAEDLGERG 334 (341)
T ss_pred Cccc----cchhHHHHHHHHHHHHHHcCCCe
Confidence 9998 79999999999999999998665
No 10
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=6.4e-65 Score=490.21 Aligned_cols=293 Identities=68% Similarity=1.107 Sum_probs=256.5
Q ss_pred ceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHH
Q 043137 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKE 228 (445)
Q Consensus 149 ~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~ 228 (445)
..+|+|++++++||.|+++++++||||++|.++.+++++++++.++|+++|+.++.|+|...+.+|++|+|.|++++.++
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 36899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 229 GLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 229 ~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
.|+++.+|++++||++++.|++|++|+++|+..+ +|++++..+..++.+.+|++|++++|.+++++|||.+|||||+.+
T Consensus 82 aL~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~ed 161 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDED 161 (295)
T ss_dssp HHHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT
T ss_pred HHHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEcccccc
Confidence 9999999999999988999999999999996444 899987655555566799999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~ 387 (445)
|+++|++|++++++++.|+||++++|+++++++.++.++++.+.||++|+|++|++++++++|+++|+.+|++|+++||+
T Consensus 162 D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsgEte 241 (295)
T PF00113_consen 162 DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSGETE 241 (295)
T ss_dssp -HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S
T ss_pred chHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCCCcC
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccccCCCCCchhHHHHHHHHHHHHHhCccccccccccCCC
Q 043137 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~G~~~~~e~~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 441 (445)
|++++|||||++++|+|.|+|+|+||++||||||||||+|++++.|.|.+||+|
T Consensus 242 D~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 242 DTFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp --HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred chhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 999999999999999999999999999999999999999999999999999987
No 11
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=1.8e-46 Score=383.35 Aligned_cols=309 Identities=16% Similarity=0.221 Sum_probs=225.5
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
|||++|++..+ ..+++.++|+|+|++|++|||+++.. +.+ ......+.+.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~~G~GE~~~~-------------------~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGVTGLGDATLN-------------------GRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCCeEEEecccC-------------------Cch-HHHHHHHHHHHHHHcCCC
Confidence 89999999765 33466789999999999999975321 111 223445778899999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|. ... .|+.+.+...|++||||||||+.||.+|+|||+||| |..++++|++ ++.. +
T Consensus 59 d~~~~e~~~~~l~-~~~------~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~r~~v~~y--~~~~-~ 125 (404)
T PRK15072 59 DAHRIEDIWQYLY-RGA------YWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GASREGVMVY--GHAN-G 125 (404)
T ss_pred ChhHHHHHHHHHH-Hhc------ccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEEE--EeCC-C
Confidence 9999999999997 311 122333445799999999999999999999999999 9767778775 3221 1
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcc----cCCCCC--CCCC--------------
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATN----VGDEGG--FAPN-------------- 222 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~----~~~~g~--~~~~-------------- 222 (445)
. +. ++..+++.+...++|+++| +|+|..... ...+.+ +.+.
T Consensus 126 ~------~~---------~~~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 186 (404)
T PRK15072 126 R------DI---------DELLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTE 186 (404)
T ss_pred C------CH---------HHHHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccH
Confidence 0 11 1223455555555677765 344421000 000000 0010
Q ss_pred --ccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeE
Q 043137 223 --IQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300 (445)
Q Consensus 223 --~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~i 300 (445)
++.+.+.++++|+++ | +++.|++|+| +.||.++++++. +.+++|++.||
T Consensus 187 ~~~~~~~~~v~avre~~---G--~~~~l~vDaN-----------------------~~w~~~~A~~~~-~~l~~~~l~~i 237 (404)
T PRK15072 187 KYLRFVPKLFEAVRNKF---G--FDLHLLHDVH-----------------------HRLTPIEAARLG-KSLEPYRLFWL 237 (404)
T ss_pred HHHHHHHHHHHHHHhhh---C--CCceEEEECC-----------------------CCCCHHHHHHHH-HhccccCCcEE
Confidence 011134555555544 5 5899999993 678999999884 56789999999
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
|||++++|+++|++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++
T Consensus 238 EeP~~~~d~~~~~~L~~~~~--iPIa~dEs~-~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h 314 (404)
T PRK15072 238 EDPTPAENQEAFRLIRQHTT--TPLAVGEVF-NSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSH 314 (404)
T ss_pred ECCCCccCHHHHHHHHhcCC--CCEEeCcCc-cCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeec
Confidence 99999999999999999998 999999985 569999999999999999999999999999999999999999998765
Q ss_pred CCCCCChhhHH--HHHHhh
Q 043137 381 HRSGETEDTFI--ADLSVG 397 (445)
Q Consensus 381 ~~~~et~~~~~--~~la~a 397 (445)
+++.++..+++ +||+.+
T Consensus 315 ~~~~~s~l~~aa~~hlaaa 333 (404)
T PRK15072 315 GPTDLSPVCMAAALHFDLW 333 (404)
T ss_pred cCcccchHHHHHHHHHHHh
Confidence 44446766554 455444
No 12
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.7e-46 Score=377.14 Aligned_cols=292 Identities=18% Similarity=0.235 Sum_probs=219.3
Q ss_pred EEEEEEEEEEecCC------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFDSR------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~~~------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
||++|+++.+.... ....++|+|+| +|++|||++.. + ......+
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~~--------------------~---~~~~~~i 56 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTYA--------------------D---AAAAALV 56 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCCC--------------------h---HHHHHHH
Confidence 68999887764321 12347899998 69999985321 1 2234457
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCccee
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVL 151 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~v 151 (445)
++.++|.|+|+||.+++++|+.|++.... +++++....|++||||||||+.||.+|+|||+||| | .++++
T Consensus 57 ~~~~~p~liG~d~~~~~~l~~~~~~~~~~------~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG---g-~~~~v 126 (352)
T cd03328 57 DGLLAPVVEGRDALDPPAAWEAMQRAVRN------AGRPGVAAMAISAVDIALWDLKARLLGLPLARLLG---R-AHDSV 126 (352)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C-CCCCe
Confidence 77899999999999999999999832221 22344445799999999999999999999999999 8 55778
Q ss_pred eeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHH
Q 043137 152 PVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 231 (445)
Q Consensus 152 p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~ 231 (445)
|+|. + ++... .+ +++..+++.+...++|+++| .|+|. +.+.+.++++
T Consensus 127 ~~y~--s--~~~~~---~~---------~e~~~~~a~~~~~~Gf~~~K----ikvg~-------------~~~~d~~~v~ 173 (352)
T cd03328 127 PVYG--S--GGFTS---YD---------DDRLREQLSGWVAQGIPRVK----MKIGR-------------DPRRDPDRVA 173 (352)
T ss_pred EEEE--e--cCCCC---CC---------HHHHHHHHHHHHHCCCCEEE----eecCC-------------CHHHHHHHHH
Confidence 7754 2 12110 01 12234555555555666654 33331 1133455666
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHH
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH 311 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~ 311 (445)
.+|+++ | +++.|++|+ |+.||.++|+++ .+.+++|++.|||||++++|+++
T Consensus 174 ~vRe~~---G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~~EeP~~~~d~~~ 224 (352)
T cd03328 174 AARRAI---G--PDAELFVDA-----------------------NGAYSRKQALAL-ARAFADEGVTWFEEPVSSDDLAG 224 (352)
T ss_pred HHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHHHhCcchhhCCCChhhHHH
Confidence 565554 5 589999999 367899999998 55689999999999999999999
Q ss_pred HHHHHHH--hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 312 YAKLTSE--VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 312 ~~~L~~~--~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
|++|+++ ++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++. |.. .+
T Consensus 225 ~~~l~~~~~~~--iPIa~gE~~-~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~-h~~----~~ 296 (352)
T cd03328 225 LRLVRERGPAG--MDIAAGEYA-YTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSA-HCA----PA 296 (352)
T ss_pred HHHHHhhCCCC--CCEEecccc-cCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecc-Cch----HH
Confidence 9999999 76 999999985 56999999999999999999999999999999999999999999855 532 34
Q ss_pred HHHHHHhhhc
Q 043137 390 FIADLSVGLA 399 (445)
Q Consensus 390 ~~~~la~a~~ 399 (445)
+.+|++++++
T Consensus 297 a~~hl~aa~~ 306 (352)
T cd03328 297 LHAHVACAVP 306 (352)
T ss_pred HHHHHHHhCC
Confidence 5677777654
No 13
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.8e-46 Score=375.81 Aligned_cols=293 Identities=22% Similarity=0.292 Sum_probs=221.2
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
|||+|++... .++|+|+||+|++|||++... ..+...+++.++|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi~G~GE~~~~-----------------------~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGTVGYANTTGG-----------------------PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCCeEEecCCCc-----------------------hHHHHHHHHHHHHHhCCCC
Confidence 7999998542 588999999999999865210 1123457788999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+++++|+.|+ ... ++++++++...|+|||||||||+.||.+|+|||+||| |+.++++|++.. . ++.
T Consensus 51 p~~~~~~~~~l~-~~~-----~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~~y~~--~-~~~ 118 (341)
T cd03327 51 PSDIEKLWDQMY-RAT-----LAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIPAYAS--G-LYP 118 (341)
T ss_pred chHHHHHHHHHH-hhc-----cccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceEEEEE--C-CCC
Confidence 999999999997 321 1123345545799999999999999999999999999 977778887542 1 110
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
. +. +...+++.+...++|+++| .|+|... ..+ ..+++.+.++++++|+++ |
T Consensus 119 ~-----~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~~~----~~~--~~~~~~d~~~v~avr~~~---g-- 169 (341)
T cd03327 119 T-----DL---------DELPDEAKEYLKEGYRGMK----MRFGYGP----SDG--HAGLRKNVELVRAIREAV---G-- 169 (341)
T ss_pred C-----CH---------HHHHHHHHHHHHcCCCEEE----ECCCCCC----Ccc--hHHHHHHHHHHHHHHHHh---C--
Confidence 0 11 2234555555556676665 3433100 000 012234455666666554 5
Q ss_pred CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 244 ~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
+++.|++|+| +.||.++++++ .+.+++|++.|||||++++|+++|++|+++++ +
T Consensus 170 ~~~~l~vDan-----------------------~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~--~ 223 (341)
T cd03327 170 YDVDLMLDCY-----------------------MSWNLNYAIKM-ARALEKYELRWIEEPLIPDDIEGYAELKKATG--I 223 (341)
T ss_pred CCCcEEEECC-----------------------CCCCHHHHHHH-HHHhhhcCCccccCCCCccCHHHHHHHHhcCC--C
Confidence 5899999993 57889999987 56688999999999999999999999999998 9
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++ .+|.. ..+.+|++.++.
T Consensus 224 pIa~gE~~-~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~-~~h~~----~~a~~hlaaa~~ 293 (341)
T cd03327 224 PISTGEHE-YTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPV-VPHAS----QIYNYHFIMSEP 293 (341)
T ss_pred CeEeccCc-cCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCee-ccccH----HHHHHHHHHhCc
Confidence 99999985 569999999999999999999999999999999999999999996 55642 345677777654
No 14
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=1.6e-44 Score=364.37 Aligned_cols=338 Identities=18% Similarity=0.227 Sum_probs=239.3
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
..++|+|+||+|++|||++.+...+|.+-.. |-| +..+++..|++.|+|.|+|+|+.+++++++.|. ...
T Consensus 50 ~~vlV~i~tddG~~G~GE~~~~~ysg~~g~~------~~~---~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~-~~~ 119 (408)
T TIGR01502 50 ESLSVLLVLEDGQVVHGDCAAVQYSGAGGRD------PLF---LAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFE-KMT 119 (408)
T ss_pred cEEEEEEEECCCCEEEEEeecceeccCcccc------ccc---cHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHH-HHh
Confidence 4589999999999999965431212211000 001 145666778889999999999999999999998 432
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC--CcceeeeeeEEeecCcccCCCCcccceeeec
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN--KNLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~--~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~ 177 (445)
. + .+ +..++++|||+||||+.||..|+|||+|||..+|. .++++|+ +.+++.-.+ ..
T Consensus 120 ~--~-----~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~--~~s~g~~~~-----~~------ 178 (408)
T TIGR01502 120 V--N-----RN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPV--FAQSGDDRY-----DN------ 178 (408)
T ss_pred h--c-----Cc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeE--EEEeeccCC-----CC------
Confidence 1 1 12 44578899999999999999999999999944333 3444554 544321000 00
Q ss_pred cCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhC-CCCCeEEEEecccc
Q 043137 178 PVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG-YTGKVVIGMDVAAS 255 (445)
Q Consensus 178 p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g-~~~~i~l~vD~~a~ 255 (445)
+++.+.++.+...++ |+.+| |+|.. ..++.+.++.+++.+++.+ ..++..|++|+|.
T Consensus 179 --~d~m~~~a~~~~~~G~~~~~K-----kvG~~-------------~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~- 237 (408)
T TIGR01502 179 --VDKMILKEVDVLPHGLINSVE-----ELGLD-------------GEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYG- 237 (408)
T ss_pred --HHHHHHHHHHHHhccCcccee-----eecCC-------------HHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCC-
Confidence 122344555544443 54444 23421 1223455666666655443 1136789999941
Q ss_pred ccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc---cCCeeeEECCCCcCC----HHHHHHHHHHh---CCCceE
Q 043137 256 EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS---DYPIVSIEDPFDQDD----WEHYAKLTSEV---GEKVQI 325 (445)
Q Consensus 256 ~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~---~~~i~~iEdP~~~~D----~~~~~~L~~~~---~~~vpI 325 (445)
|- +.-+.||++++++++.++-+ ++++ |||||++++| +++|++|++++ +.++||
T Consensus 238 --------~~--------~~~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI 300 (408)
T TIGR01502 238 --------TI--------GEAFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEI 300 (408)
T ss_pred --------Cc--------ccccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 00 00137899999998766433 4787 9999999865 99999999984 112999
Q ss_pred EeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhcCCcc
Q 043137 326 VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLATGQI 403 (445)
Q Consensus 326 ~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~~~~~ 403 (445)
++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|+++++++++.||.++ +++||++++++.++
T Consensus 301 ~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~ 379 (408)
T TIGR01502 301 VADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQV 379 (408)
T ss_pred EecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCce
Confidence 99998 5779999999999999999999999999999999999999999999998877788765 55699999887765
Q ss_pred --ccCCCCCchhHHHHHHHHHHHHHh
Q 043137 404 --KTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 404 --~~G~~~~~e~~~k~n~ll~i~~~l 427 (445)
|+|.-.+..-+.++||+.|.-..+
T Consensus 380 l~kpg~g~d~~~~~~~ne~~r~~~~~ 405 (408)
T TIGR01502 380 LAKPGMGVDEGMMIVKNEMNRVLALV 405 (408)
T ss_pred EecCCCCcchhHHHHHHHHHHHHHHh
Confidence 577655555699999999987644
No 15
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.5e-44 Score=359.44 Aligned_cols=324 Identities=18% Similarity=0.255 Sum_probs=221.7
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccH----HHHHHHHHHhHhhhhcCCCCCCHHHHHHHHH
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGV----SKAVSNVNAIIGPALAGKDPTEQTAIDNYMV 95 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~----~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~ 95 (445)
..++|+|+||+|++|||++.+...++ +.+++. ..+...+++.|+|.|+|+||.+++.+|+.|+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~-------------~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~ 79 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSG-------------AGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLD 79 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccC-------------cCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHH
Confidence 46889999999999999753211111 111111 3345568888999999999999999999997
Q ss_pred HHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCC-----CcceeeeeeEEeecCcccCCCCcc
Q 043137 96 QQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGN-----KNLVLPVPAFNVINGGSHAGNKLA 170 (445)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~-----~~~~vp~~~~~~~~gg~~~~~~~~ 170 (445)
+.+. . | .....+++|||||||||+.||.+|+|||+||| |. .+.++|+ |.++++. .
T Consensus 80 ~~~~-~------g-~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLG---g~~~~g~~r~~v~~--y~~~~~~-------~ 139 (369)
T cd03314 80 KMRL-D------G-NRLHTAIRYGVSQALLDAVALAQRRTMAEVLC---DEYGLPLADEPVPI--FAQSGDD-------R 139 (369)
T ss_pred HHhh-c------C-CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcC---CcccCCCcccceEE--EEEecCc-------c
Confidence 3211 0 1 12335688999999999999999999999998 64 3455555 5432210 0
Q ss_pred cceeeeccCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEE
Q 043137 171 MQEFMILPVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIG 249 (445)
Q Consensus 171 ~~e~~~~p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~ 249 (445)
..+ .++..+++.+...++ |+.+| .| |....++. ... ...++.+ +++|.+| +++.|+
T Consensus 140 ~~~------~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~~~---~~~~~~v-~avr~~G--~~~~l~ 196 (369)
T cd03314 140 YIN------VDKMILKGADVLPHALINNVE----EK-GPKGEKLL------EYV---KWLSDRI-RKLGRPG--YHPILH 196 (369)
T ss_pred ccc------HHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------HhH---HHHHHHH-HHHhhcC--CCCEEE
Confidence 000 011122222222111 33333 23 43211111 011 1222333 2333345 589999
Q ss_pred EeccccccccCCceeeecccCCCCCCCCcc--CHHHHHHHHHHhhccC-C--eeeEECCCCcCC----HHHHHHHHHHh-
Q 043137 250 MDVAASEFYGSDKTYDLNFKEENNDGSQKI--SGDALKDLYKSFISDY-P--IVSIEDPFDQDD----WEHYAKLTSEV- 319 (445)
Q Consensus 250 vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~--t~~~ai~~~~~~l~~~-~--i~~iEdP~~~~D----~~~~~~L~~~~- 319 (445)
+|+|.. | .|+| |.+++++++. .++++ + +.|||||++++| +++|++|++++
T Consensus 197 vDaN~~--------w-----------~~~~~~~~~~A~~~~~-~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~ 256 (369)
T cd03314 197 IDVYGT--------I-----------GQAFDPDPDRAADYLA-TLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELD 256 (369)
T ss_pred EEcCCc--------c-----------ccccCCCHHHHHHHHH-HHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhh
Confidence 999520 0 1457 8999999855 46654 3 789999999865 89999999995
Q ss_pred ----CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHH
Q 043137 320 ----GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIAD 393 (445)
Q Consensus 320 ----~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~ 393 (445)
+ +||++||+. .++++++++++.+++|++|||++++||||++++++++|+++|++++++|++.|+.++ +.+|
T Consensus 257 ~~~~~--iPIa~dEs~-~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lH 333 (369)
T cd03314 257 RRGVG--VRIVADEWC-NTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVH 333 (369)
T ss_pred cCCCC--ceEEecCCc-CCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHH
Confidence 6 999999985 679999999999999999999999999999999999999999999888766788765 5668
Q ss_pred HHhhhcCCccc--cCCCCCchhHHHHHHHHH
Q 043137 394 LSVGLATGQIK--TGAPCRSERLAKYNQLLR 422 (445)
Q Consensus 394 la~a~~~~~~~--~G~~~~~e~~~k~n~ll~ 422 (445)
++.++++.|+. +|.-.+..-+.+.|++-|
T Consensus 334 laaa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (369)
T cd03314 334 VALATRADQMLAKPGMGVDEGLMIVTNEMNR 364 (369)
T ss_pred HHHhcCCcceeeCCCCCccchHHHHHHHHHH
Confidence 88888876654 555445556667777655
No 16
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.8e-44 Score=361.93 Aligned_cols=296 Identities=21% Similarity=0.270 Sum_probs=224.6
Q ss_pred eEEEEEEEEEEecCC--------C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHH
Q 043137 3 ITITAVKARQIFDSR--------G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSN 70 (445)
Q Consensus 3 mkI~~v~~~~v~~~~--------g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~ 70 (445)
|||++|+++.+..+. + ...++|+|+||+|++|+|+++. |.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~------------------~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT------------------YTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec------------------CCCCcHHHHHHH
Confidence 799999999875321 1 2468999999999999986432 223334444444
Q ss_pred HHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcce
Q 043137 71 VNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLV 150 (445)
Q Consensus 71 i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~ 150 (445)
+ +.++|.|+|+++ +.+++++.+.+.+. .+|+.++...|++||||||||+.||.+|+|||+||| |. +++
T Consensus 63 ~-~~l~p~LiG~~~-~~~~~~~~~~~~~~------~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~-~~~ 130 (355)
T cd03321 63 L-DDMAALLVGEPL-APAELERALAKRFR------LLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GN-PRP 130 (355)
T ss_pred H-HHHHHHhCCCCC-ChHHHHHHHHHHHH------hhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCC
Confidence 4 469999999986 77888888873221 112334446799999999999999999999999999 86 456
Q ss_pred eeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 151 vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
+|+ |.+++.+ + +++.++++.+...++|+++| .|.|. ++.+.+.+.+
T Consensus 131 v~~--y~s~~~~-------~---------~~~~~~~a~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v 176 (355)
T cd03321 131 VQA--YDSHGLD-------G---------AKLATERAVTAAEEGFHAVK----TKIGY------------PTADEDLAVV 176 (355)
T ss_pred eeE--EEeCCCC-------h---------HHHHHHHHHHHHHhhhHHHh----hhcCC------------CChHhHHHHH
Confidence 666 4332111 1 12335667777777898877 34441 1223445666
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ | +++.|++|+ |+.|+.+++++++ +.++++++.|||||++++|++
T Consensus 177 ~air~~~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~ 227 (355)
T cd03321 177 RSIRQAV---G--DGVGLMVDY-----------------------NQSLTVPEAIERG-QALDQEGLTWIEEPTLQHDYE 227 (355)
T ss_pred HHHHHhh---C--CCCEEEEeC-----------------------CCCcCHHHHHHHH-HHHHcCCCCEEECCCCCcCHH
Confidence 6666554 5 589999999 3678999999985 557899999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
+|++|+++++ +||++||+. .++++++++++.+++|++|+|++++||+|++++++++|+++|+++ ++|... +.
T Consensus 228 ~~~~l~~~~~--ipia~~E~~-~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~-~~h~~~----~~ 299 (355)
T cd03321 228 GHARIASALR--TPVQMGENW-LGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPM-SSHLFQ----EI 299 (355)
T ss_pred HHHHHHHhcC--CCEEEcCCC-cCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCee-cccchH----HH
Confidence 9999999999 999999985 679999999999999999999999999999999999999999997 456432 24
Q ss_pred HHHHHhhhc
Q 043137 391 IADLSVGLA 399 (445)
Q Consensus 391 ~~~la~a~~ 399 (445)
.+|++.+++
T Consensus 300 ~~h~~aa~~ 308 (355)
T cd03321 300 SAHLLAVTP 308 (355)
T ss_pred HHHHHHhCC
Confidence 678877654
No 17
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=8.1e-45 Score=366.31 Aligned_cols=289 Identities=16% Similarity=0.224 Sum_probs=219.0
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
||++|+.... ..+++.++|+|+||+|++|||+++.. | . .......+++.|+|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~~G~GE~~~~---~----------------~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGVTGLGDATLN---G----------------R-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCCeEEEecccC---C----------------C-HHHHHHHHHHHHHHHcCCCC
Confidence 7999998544 33466789999999999999975321 1 0 12334567788999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+++.+|+.|. ... + |+.+.....|++|||+||||+.||.+|+|||+||| |..++++|+++ +. ++
T Consensus 59 ~~~~~~~~~~~~-~~~----~--~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~ya--~~-~~- 124 (361)
T cd03322 59 ANRIEDIWQYLY-RGA----Y--WRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMVYS--HA-SG- 124 (361)
T ss_pred hhHHHHHHHHHH-Hhc----c--cCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeEEE--eC-CC-
Confidence 999999999997 311 0 11223335699999999999999999999999999 97777888753 21 11
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCC
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~ 243 (445)
.+. ++..+++.+...++|+++|. | ..+.++++|+++ |
T Consensus 125 -----~~~---------~~~~~~a~~~~~~Gf~~~Ki----K--------------------v~~~v~avre~~---G-- 161 (361)
T cd03322 125 -----RDI---------PELLEAVERHLAQGYRAIRV----Q--------------------LPKLFEAVREKF---G-- 161 (361)
T ss_pred -----CCH---------HHHHHHHHHHHHcCCCeEee----C--------------------HHHHHHHHHhcc---C--
Confidence 011 12234444444445555541 1 034555555544 5
Q ss_pred CCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCc
Q 043137 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV 323 (445)
Q Consensus 244 ~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v 323 (445)
+++.|++|+ |+.||.+++++++ +.+++|++.|||||++++|+++|++|+++++ +
T Consensus 162 ~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~--~ 215 (361)
T cd03322 162 FEFHLLHDV-----------------------HHRLTPNQAARFG-KDVEPYRLFWMEDPTPAENQEAFRLIRQHTA--T 215 (361)
T ss_pred CCceEEEEC-----------------------CCCCCHHHHHHHH-HHhhhcCCCEEECCCCcccHHHHHHHHhcCC--C
Confidence 589999999 3678999999884 5688999999999999999999999999998 9
Q ss_pred eEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhh
Q 043137 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 324 pI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
||++||+. .++.+++++++.+++|++|+|++++||||++++++++|+++|++++++++..++..+. .+||+.++
T Consensus 216 pia~gE~~-~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa~~ 291 (361)
T cd03322 216 PLAVGEVF-NSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDLWV 291 (361)
T ss_pred CEEeccCC-cCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHhhc
Confidence 99999985 6799999999999999999999999999999999999999999986654444576554 45565443
No 18
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=5.5e-45 Score=370.35 Aligned_cols=302 Identities=14% Similarity=0.135 Sum_probs=220.3
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
|||++|+++.+. ...++|+|+|++|++|||+++.+. ........+ +.++|.|+|+
T Consensus 1 mkI~~i~~~~~~----~~~vlV~v~t~dG~~G~GE~~~~~--------------------~~~~~~~~~-~~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRVP----PRWLFLKIETDEGIVGWGEPVVEG--------------------RARTVEAAV-HELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEEC----CCEEEEEEEECCCCeEEeccccCC--------------------chHHHHHHH-HHHHHHhCCC
Confidence 899999998761 125889999999999999754311 012223334 4699999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCc
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGG 162 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg 162 (445)
||.+++++|+.|+ ... .++.+.....|++||||||||+.||.+|+|||+||| |+.++++|++. +++++
T Consensus 56 d~~~~~~~~~~l~-~~~------~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i~~~~--~~~~~ 123 (382)
T PRK14017 56 DPRRIEDHWQVMY-RGG------FYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRIRVYS--WIGGD 123 (382)
T ss_pred CHHHHHHHHHHHH-Hhc------ccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeeEeE--eCCCC
Confidence 9999999999997 311 011122235699999999999999999999999999 97677787753 22211
Q ss_pred ccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCC
Q 043137 163 SHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242 (445)
Q Consensus 163 ~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~ 242 (445)
+. ++.++++.+...++|+.+| .|.|.. .+..++ ..+.+.+.++++++|+++ |
T Consensus 124 -------~~---------~~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g- 175 (382)
T PRK14017 124 -------RP---------ADVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---G- 175 (382)
T ss_pred -------CH---------HHHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---C-
Confidence 11 2223455555455666655 333210 000000 011233455565555554 5
Q ss_pred CCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCC
Q 043137 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEK 322 (445)
Q Consensus 243 ~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~ 322 (445)
+++.|++|+ |+.||.+++++++ +.++++++.|||||++++|++++++|+++++
T Consensus 176 -~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~-- 228 (382)
T PRK14017 176 -PEIGIGVDF-----------------------HGRVHKPMAKVLA-KELEPYRPMFIEEPVLPENAEALPEIAAQTS-- 228 (382)
T ss_pred -CCCeEEEEC-----------------------CCCCCHHHHHHHH-HhhcccCCCeEECCCCcCCHHHHHHHHhcCC--
Confidence 589999999 3678999999884 5678999999999999999999999999998
Q ss_pred ceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC-hhhHHHHHHhhh
Q 043137 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET-EDTFIADLSVGL 398 (445)
Q Consensus 323 vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et-~~~~~~~la~a~ 398 (445)
+||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++++ .++ +.++.+||+.++
T Consensus 229 ~pIa~dEs~-~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~~i~~aa~~hl~aa~ 303 (382)
T PRK14017 229 IPIATGERL-FSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP-LGPIALAACLQVDAVS 303 (382)
T ss_pred CCEEeCCcc-CCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhC
Confidence 999999985 67999999999999999999999999999999999999999999876554 332 333555665554
No 19
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=2.3e-44 Score=364.40 Aligned_cols=298 Identities=21% Similarity=0.232 Sum_probs=221.7
Q ss_pred EEEEEEEEEecCC------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHH
Q 043137 5 ITAVKARQIFDSR------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVN 72 (445)
Q Consensus 5 I~~v~~~~v~~~~------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~ 72 (445)
|++|+++.+..+. ..+.++|||+|++|++|||++.... .++|++++...+...++
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~-------------~~~~~~~~~~~~~~~~~ 67 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIG-------------GLWWGGESPETIKANID 67 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCC-------------CCccCCCCHHHHHHHHH
Confidence 5677776653221 2356899999999999999754311 12244555666666777
Q ss_pred HhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceee
Q 043137 73 AIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLP 152 (445)
Q Consensus 73 ~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp 152 (445)
+.++|.|+|+|+.+++.+++.|.+.+.+ ...|++|||+||||+.||.+|+|+|+||| |..+.++|
T Consensus 68 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~------------~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~ 132 (368)
T TIGR02534 68 TYLAPVLVGRDATEIAAIMADLEKVVAG------------NRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVD 132 (368)
T ss_pred HhhHHHHcCCChhhHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceE
Confidence 7899999999999999999888732211 13489999999999999999999999999 97777788
Q ss_pred eeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHH
Q 043137 153 VPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMG-VEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 231 (445)
Q Consensus 153 ~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~-~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~ 231 (445)
++.. +..+ +. .+.++++.+.. .++|+++| +|+|. .+.+.+.++++
T Consensus 133 ~~~~--~~~~-------~~---------~~~~~~~~~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v~ 178 (368)
T TIGR02534 133 VTWT--LASG-------DT---------DRDIAEAEERIEEKRHRSFK----LKIGA------------RDPADDVAHVV 178 (368)
T ss_pred EEEE--EeCC-------CH---------HHHHHHHHHHHHhcCcceEE----EEeCC------------CCcHHHHHHHH
Confidence 7532 2111 00 11122333222 13555544 34431 12233456666
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHH
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH 311 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~ 311 (445)
.+|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|+++
T Consensus 179 ~~re~~---g--~~~~l~~Da-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~ 229 (368)
T TIGR02534 179 AIAKAL---G--DRASVRVDV-----------------------NAAWDERTALHY-LPQLADAGVELIEQPTPAENREA 229 (368)
T ss_pred HHHHhc---C--CCcEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcChhheECCCCcccHHH
Confidence 555554 5 589999999 367899999998 45688999999999999999999
Q ss_pred HHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHH
Q 043137 312 YAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFI 391 (445)
Q Consensus 312 ~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~ 391 (445)
+++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ +.++.++.+
T Consensus 230 ~~~l~~~~~--~pia~dE~~-~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~-~~~s~i~~a 305 (368)
T TIGR02534 230 LARLTRRFN--VPIMADESV-TGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGT-MLEGPIGTI 305 (368)
T ss_pred HHHHHHhCC--CCEEeCccc-CCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeec-chhhHHHHH
Confidence 999999988 999999984 6799999999999999999999999999999999999999999987765 457777654
Q ss_pred HHHHhh
Q 043137 392 ADLSVG 397 (445)
Q Consensus 392 ~~la~a 397 (445)
+.++++
T Consensus 306 a~~h~~ 311 (368)
T TIGR02534 306 ASAHFF 311 (368)
T ss_pred HHHHHH
Confidence 444443
No 20
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.9e-44 Score=362.50 Aligned_cols=300 Identities=20% Similarity=0.253 Sum_probs=225.5
Q ss_pred EEEEEEEEEEecCC------------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFDSR------------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~~~------------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
||++|+++.+..+. .+..++|+|+|++|++|||++.... +++|.+++....+..+
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~-------------~~~~~~~~~~~~~~~l 67 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPG-------------GPAWGGESPETIKAII 67 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCC-------------CCccCCCCHHHHHHHH
Confidence 58888887764321 2355899999999999999754211 1124455556666678
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCccee
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVL 151 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~v 151 (445)
++.+.|.|+|+|+.+++++|+.|.+.+.+ ...|++||||||||+.||.+|+|+|+||| |..++++
T Consensus 68 ~~~~~~~l~G~~~~~~~~~~~~l~~~~~~------------~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v 132 (365)
T cd03318 68 DRYLAPLLIGRDATNIGAAMALLDRAVAG------------NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSL 132 (365)
T ss_pred HHhhHHHHcCCChHHHHHHHHHHHHHhcC------------CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCce
Confidence 88899999999999999999999832211 13589999999999999999999999999 8767778
Q ss_pred eeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHH
Q 043137 152 PVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGL 230 (445)
Q Consensus 152 p~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~-~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l 230 (445)
|++.. +..+ +. ++..+++.+...++ |+++| .|+|. .+.+.+.+.+
T Consensus 133 ~~~~~--~~~~-------~~---------~~~~~~~~~~~~~G~f~~~K----iKvg~------------~~~~~d~~~v 178 (365)
T cd03318 133 PVAWT--LASG-------DT---------ERDIAEAEEMLEAGRHRRFK----LKMGA------------RPPADDLAHV 178 (365)
T ss_pred EEEEE--EeCC-------CH---------HHHHHHHHHHHhCCCceEEE----EEeCC------------CChHHHHHHH
Confidence 77542 2111 00 11233444444455 65544 34331 1123345555
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHH
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~ 310 (445)
+++|+++ | +++.|++|+ |+.||.++++++ .+.++++++.|||||++++|++
T Consensus 179 ~avr~~~---g--~~~~l~iDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~~~~ 229 (365)
T cd03318 179 EAIAKAL---G--DRASVRVDV-----------------------NQAWDESTAIRA-LPRLEAAGVELIEQPVPRENLD 229 (365)
T ss_pred HHHHHHc---C--CCcEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCcceeeCCCCcccHH
Confidence 5555544 4 489999999 357889999988 4568999999999999999999
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF 390 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~ 390 (445)
++++|+++++ +||++||+. .++++++++++.+++|++|+|++++||||++++++++|+++|++++++|+ .++..+.
T Consensus 230 ~~~~l~~~~~--~pia~dE~~-~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~-~~s~i~~ 305 (365)
T cd03318 230 GLARLRSRNR--VPIMADESV-SGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTM-LESSIGT 305 (365)
T ss_pred HHHHHHhhcC--CCEEcCccc-CCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCc-chhHHHH
Confidence 9999999988 999999984 67999999999999999999999999999999999999999999987764 5777654
Q ss_pred --HHHHHhhh
Q 043137 391 --IADLSVGL 398 (445)
Q Consensus 391 --~~~la~a~ 398 (445)
.+|++.++
T Consensus 306 aa~~hlaaa~ 315 (365)
T cd03318 306 AASAHLFATL 315 (365)
T ss_pred HHHHHHHHhC
Confidence 44555553
No 21
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.3e-44 Score=360.03 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=218.0
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKD 83 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d 83 (445)
||++|+++.+ ..+.++|+|+|++|++|||++.... . .......+++ ++|.|+|+|
T Consensus 1 ~I~~i~~~~~----~~~~~~V~i~~~~G~~G~GE~~~~~---~-----------------~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV----PPRWLFVKIETDEGVVGWGEPTVEG---K-----------------ARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE----CCCEEEEEEEECCCCEEEeccccCC---c-----------------chHHHHHHHH-HHHHhCCCC
Confidence 6899998766 2356899999999999999754211 0 1222334555 999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcc
Q 043137 84 PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGS 163 (445)
Q Consensus 84 ~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~ 163 (445)
|.+++.+++.|. ... . ++.+....+|++||||||||+.||.+|+|||+||| |..+.++|++. +++++
T Consensus 56 ~~~~~~~~~~~~-~~~-~-----~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~~~--~~~~~- 122 (352)
T cd03325 56 PMNIEHHWQVMY-RGG-F-----YRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRVYS--WIGGD- 122 (352)
T ss_pred HHHHHHHHHHHH-Hhc-C-----cCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEEEE--eCCCC-
Confidence 999999999996 311 1 11122234699999999999999999999999999 97677787753 22211
Q ss_pred cCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC---CCccChHHHHHHHHHHHHHh
Q 043137 164 HAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFA---PNIQENKEGLELLNTAIAKA 240 (445)
Q Consensus 164 ~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~---~~~~~~~~~l~~l~~av~~~ 240 (445)
+. +...+++.+...++|+.+| .|+|.. ..+. .+.+.+.++++++|+++
T Consensus 123 ------~~---------~~~~~~~~~~~~~Gf~~~K----iKvg~~-------~~~~~~~~~~~~D~~~i~avr~~~--- 173 (352)
T cd03325 123 ------RP---------SDVAEAARARREAGFTAVK----MNATEE-------LQWIDTSKKVDAAVERVAALREAV--- 173 (352)
T ss_pred ------CH---------HHHHHHHHHHHHcCCCEEE----ecCCCC-------cccCCCHHHHHHHHHHHHHHHHhh---
Confidence 11 1123444444444565554 344421 0111 11233455555555544
Q ss_pred CCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC
Q 043137 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG 320 (445)
Q Consensus 241 g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~ 320 (445)
| +++.|++|+ |+.||.++++++. +.++++++.|||||++++|++++++|+++++
T Consensus 174 g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~ 227 (352)
T cd03325 174 G--PDIDIGVDF-----------------------HGRVSKPMAKDLA-KELEPYRLLFIEEPVLPENVEALAEIAARTT 227 (352)
T ss_pred C--CCCEEEEEC-----------------------CCCCCHHHHHHHH-HhccccCCcEEECCCCccCHHHHHHHHHhCC
Confidence 5 589999999 3678999999884 5678999999999999999999999999998
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhh
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
+||++||+. .+++++.++++.+++|++|+|++++||+|++++++++|+++|++++ +|.. ++.++ +.+||+.++
T Consensus 228 --~pia~dEs~-~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~-~h~~-~s~i~~~a~~hlaa~~ 302 (352)
T cd03325 228 --IPIATGERL-FSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALA-PHCP-LGPIALAASLHVDAST 302 (352)
T ss_pred --CCEEecccc-cCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEe-ccCC-CChHHHHHHHHHHHhc
Confidence 999999985 5699999999999999999999999999999999999999999986 4533 66555 455555544
No 22
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.1e-43 Score=359.41 Aligned_cols=283 Identities=18% Similarity=0.173 Sum_probs=207.8
Q ss_pred CceEEEEEEeCC---C--ceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCC--------
Q 043137 19 NPTVEVDVTTSD---G--HVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPT-------- 85 (445)
Q Consensus 19 ~~~v~V~v~td~---G--~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~-------- 85 (445)
..+++|+|+||+ | ++|||++..+. ... ...+++.++|.|+|+||.
T Consensus 26 ~~~~lV~v~td~~~~G~~~~G~Ge~~~~~--------------------~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~ 83 (385)
T cd03326 26 LTTSLVAVVTDVVRDGRPVVGYGFDSIGR--------------------YAQ--GGLLRERFIPRLLAAAPDSLLDDAGG 83 (385)
T ss_pred cEEEEEEEEeccccCCCceeEEEeccCCc--------------------hhH--HHHHHHHHHHHhcCCChHHhhhcccc
Confidence 356899999999 9 99998753210 011 134778899999999999
Q ss_pred --CHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC-----cceeeeeeEEe
Q 043137 86 --EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK-----NLVLPVPAFNV 158 (445)
Q Consensus 86 --~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~-----~~~vp~~~~~~ 158 (445)
+++++|+.|++.. . ++.......|+|||||||||+.||.+|+|||+||| |+. ++++|+|+ +
T Consensus 84 ~~~~~~l~~~~~~~~--~-----~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~~~~~~~~~v~~y~--~ 151 (385)
T cd03326 84 NLDPARAWAAMMRNE--K-----PGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA---RRYGRGQADPRVPVYA--A 151 (385)
T ss_pred cCCHHHHHHHHHhcC--c-----cCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CcccCCCCCCeEEEEE--e
Confidence 4499999997311 0 11222335799999999999999999999999999 853 35677644 2
Q ss_pred ecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHH
Q 043137 159 INGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIA 238 (445)
Q Consensus 159 ~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~ 238 (445)
++...+ .. ..++..+++.+...++|+++| .|+|. .+.+.+.++++.+|+++
T Consensus 152 --~~~~~~--~~--------~~~~~~~~a~~~~~~Gf~~~K----ikvg~------------~~~~~di~~v~avRe~~- 202 (385)
T cd03326 152 --GGYYYP--GD--------DLGRLRDEMRRYLDRGYTVVK----IKIGG------------APLDEDLRRIEAALDVL- 202 (385)
T ss_pred --cCCCCC--CC--------CHHHHHHHHHHHHHCCCCEEE----EeCCC------------CCHHHHHHHHHHHHHhc-
Confidence 121100 00 011223455544445565554 33331 11233455666555554
Q ss_pred HhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHH
Q 043137 239 KAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSE 318 (445)
Q Consensus 239 ~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~ 318 (445)
| +++.|++|+ |+.||.++++++ .+.+++|++.|||||++++|++++++|+++
T Consensus 203 --G--~~~~l~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~ 254 (385)
T cd03326 203 --G--DGARLAVDA-----------------------NGRFDLETAIAY-AKALAPYGLRWYEEPGDPLDYALQAELADH 254 (385)
T ss_pred --C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHhhCcCCCEEECCCCccCHHHHHHHHhh
Confidence 6 589999999 367899999997 556899999999999999999999999999
Q ss_pred hCCCceEEeCcccccCHHHHHHHHhcCCC----CEEEeccCCcccHHHHHHHHHHHHHcCCc--EEecCCCCCChhhHHH
Q 043137 319 VGEKVQIVGDDLLVTNPKRVEKAIKEKTC----NALLLKVNQIGSVTESIEAVRMSKQAGWG--VMASHRSGETEDTFIA 392 (445)
Q Consensus 319 ~~~~vpI~gde~~~~~~~~~~~~i~~~a~----d~v~ik~~~~GGit~a~~ia~~A~~~g~~--~~~~~~~~et~~~~~~ 392 (445)
++ +||++||+. .++++++++++.+++ |++|+|++++||||++++++++|+++|++ ++.+|. ...+.+
T Consensus 255 ~~--iPIa~gEs~-~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~----~~~a~l 327 (385)
T cd03326 255 YD--GPIATGENL-FSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHG----GHLMSL 327 (385)
T ss_pred CC--CCEEcCCCc-CCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCCceeecch----HHHHHH
Confidence 98 999999985 569999999999988 99999999999999999999999999998 356674 234566
Q ss_pred HHHhhhc
Q 043137 393 DLSVGLA 399 (445)
Q Consensus 393 ~la~a~~ 399 (445)
|++.+..
T Consensus 328 hl~aa~~ 334 (385)
T cd03326 328 HIAAGLG 334 (385)
T ss_pred HHHhcCC
Confidence 7776644
No 23
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=6.6e-44 Score=361.49 Aligned_cols=276 Identities=18% Similarity=0.211 Sum_probs=207.4
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
.+++|||+||+|++|+|++..+ ......+++.|+|.|+|+||.+++++|+.|++..
T Consensus 57 ~~vlVrI~td~G~~G~Ge~~~~-----------------------~~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~- 112 (394)
T PRK15440 57 GTLVVEVEAENGQVGFAVSTAG-----------------------EMGAFIVEKHLNRFIEGKCVSDIELIWDQMLNAT- 112 (394)
T ss_pred ceEEEEEEECCCCEEEEeCCCc-----------------------HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhc-
Confidence 4588999999999999874211 1123457788999999999999999999998321
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~ 179 (445)
. .++++++..+|+|||||||||+.||.+|+|||+||| |..++++|+|+ + ++. .
T Consensus 113 ~-----~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~--~~~--------~------- 165 (394)
T PRK15440 113 L-----YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDELQFYA--T--GAR--------P------- 165 (394)
T ss_pred c-----ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCeeEEEe--c--CCC--------h-------
Confidence 1 122344545799999999999999999999999999 97777888643 2 110 0
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccccc
Q 043137 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYG 259 (445)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~ 259 (445)
+.+. .++|+++| +|+|.. .. .| ..+++.+.++++.+|+++ | +++.|++|+
T Consensus 166 -----~~a~---~~Gf~~~K----ik~~~g-~~---~g--~~~~~~di~~v~avReav---G--~d~~l~vDa------- 215 (394)
T PRK15440 166 -----DLAK---EMGFIGGK----MPLHHG-PA---DG--DAGLRKNAAMVADMREKV---G--DDFWLMLDC------- 215 (394)
T ss_pred -----HHHH---hCCCCEEE----EcCCcC-cc---cc--hHHHHHHHHHHHHHHHhh---C--CCCeEEEEC-------
Confidence 1111 13566554 333210 00 01 011233455666665554 6 589999999
Q ss_pred CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHH
Q 043137 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVE 339 (445)
Q Consensus 260 ~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~ 339 (445)
|+.||.++|+++ .+.+++|++.|||||++++|+++|++|+++++.++||+++|+. .++++++
T Consensus 216 ----------------N~~~~~~~Ai~~-~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~-~~~~~~~ 277 (394)
T PRK15440 216 ----------------WMSLDVNYATKL-AHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHE-ATLQGFR 277 (394)
T ss_pred ----------------CCCCCHHHHHHH-HHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCCc-cCHHHHH
Confidence 367899999988 5668999999999999999999999999997655788889985 5699999
Q ss_pred HHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhc
Q 043137 340 KAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLA 399 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~ 399 (445)
++++.+++|++|+|+++|||||+++|++++|+++|+++ .+|.+ ....+|++++..
T Consensus 278 ~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~-~pH~~----~~~~~hl~aa~~ 332 (394)
T PRK15440 278 TLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLV-VPHGS----SVYSHHFVITRT 332 (394)
T ss_pred HHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCee-cccCH----HHHHHHHHhhCc
Confidence 99999999999999999999999999999999999996 56732 245567776654
No 24
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.1e-43 Score=362.21 Aligned_cols=291 Identities=17% Similarity=0.212 Sum_probs=209.3
Q ss_pred eEEEEEEEEEEecCC--------C---C---ceEEEEEEeCC-CceEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 3 ITITAVKARQIFDSR--------G---N---PTVEVDVTTSD-GHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 3 mkI~~v~~~~v~~~~--------g---~---~~v~V~v~td~-G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
+|||+|+++.+..+. . . ..++|+|+||+ |++|||++... +.+....
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~-------------------~~~~~~~ 61 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTI-------------------GRGNEIV 61 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccC-------------------CCchHHH
Confidence 489999998885221 1 1 35899999999 99999975421 1112222
Q ss_pred HHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccc-c-ccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 68 VSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGW-C-KQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~-~-~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
.. +.+.++|.|+|+||.+++.+++.+++.+..... +.| + .+++...|+|||||||||+.||.+|+|||+||| |
T Consensus 62 ~~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG---g 136 (415)
T cd03324 62 CA-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQ-LRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV---D 136 (415)
T ss_pred HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcccc-ceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C
Confidence 33 346799999999999997766666533322100 011 1 123334699999999999999999999999999 8
Q ss_pred CCc-----------------------------------------ceeeeeeEEeecCcccCCCCcccceeeeccCChhcH
Q 043137 146 NKN-----------------------------------------LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCF 184 (445)
Q Consensus 146 ~~~-----------------------------------------~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~ 184 (445)
..+ +++|+ |++ ++++.. .+ +++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--y~~-~~~~~~---~~---------~~~~~ 201 (415)
T cd03324 137 MTPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPA--YTT-SAGWLG---YS---------DEKLR 201 (415)
T ss_pred CCHHHhhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCce--eec-CCcccC---CC---------HHHHH
Confidence 433 33444 321 112100 01 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCcee
Q 043137 185 KEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTY 264 (445)
Q Consensus 185 ~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y 264 (445)
+++.+...++|+++| .|+|. +.+.+.++++++|+++ | +++.|++|+
T Consensus 202 ~~a~~~~~~Gf~~~K----iKvg~-------------~~~~d~~~v~avRe~v---G--~~~~L~vDa------------ 247 (415)
T cd03324 202 RLCKEALAQGFTHFK----LKVGA-------------DLEDDIRRCRLAREVI---G--PDNKLMIDA------------ 247 (415)
T ss_pred HHHHHHHHcCCCEEE----EeCCC-------------CHHHHHHHHHHHHHhc---C--CCCeEEEEC------------
Confidence 555555555666554 33331 1233455666565554 6 689999999
Q ss_pred eecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHH
Q 043137 265 DLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 265 ~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~ 341 (445)
|+.||.++++++ .+.++++++.|||||++++|+++|++|++++ + +||++||+. .++++++++
T Consensus 248 -----------N~~w~~~~A~~~-~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~--iPIa~gEs~-~~~~~~~~l 312 (415)
T cd03324 248 -----------NQRWDVPEAIEW-VKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLP--IGVATGEHC-QNRVVFKQL 312 (415)
T ss_pred -----------CCCCCHHHHHHH-HHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCC--CceecCCcc-CCHHHHHHH
Confidence 367899999988 5568999999999999999999999999998 6 999999985 569999999
Q ss_pred HhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 342 IKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 342 i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
++.+++|++|+|++++||||++++++++|+++|+++ .+|.
T Consensus 313 l~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~-~pH~ 352 (415)
T cd03324 313 LQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPV-CPHA 352 (415)
T ss_pred HHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE-EEcC
Confidence 999999999999999999999999999999999997 5563
No 25
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=3.6e-43 Score=355.53 Aligned_cols=295 Identities=16% Similarity=0.177 Sum_probs=216.4
Q ss_pred EEEEEEEEEEecC------------CC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHH
Q 043137 4 TITAVKARQIFDS------------RG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKA 67 (445)
Q Consensus 4 kI~~v~~~~v~~~------------~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a 67 (445)
||++|+++.+..+ .+ +..++|||+||+|++|||+.... . .+
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~----------------------~-~~ 57 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP----------------------V-TD 57 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc----------------------h-hH
Confidence 6888888877421 11 24689999999999999863210 1 12
Q ss_pred HHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCC
Q 043137 68 VSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNK 147 (445)
Q Consensus 68 ~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~ 147 (445)
...+.+.++|.|+|+||.+++++|+.|.+.+.+ ....|++||||||||+.||.+|+|||+||| | .
T Consensus 58 ~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~~~-----------~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g-~ 122 (368)
T cd03329 58 PALVDRFLKKVLIGQDPLDRERLWQDLWRLQRG-----------LTDRGLGLVDIALWDLAGKYLGLPVHRLLG---G-Y 122 (368)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhcC-----------cchhHHHHHHHHHHHHhhhhcCCcHHHHhh---c-c
Confidence 335677899999999999999999999842221 224699999999999999999999999999 8 5
Q ss_pred cceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChH
Q 043137 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENK 227 (445)
Q Consensus 148 ~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~ 227 (445)
++++|++.. +..+... .... .+++..+++.+...+||+.+| .|.|. ....+.+.
T Consensus 123 ~~~v~~y~s--~~~~~~~-~~~~--------~~~~~~~~a~~~~~~Gf~~~K----ik~~~-----------~~~~~~di 176 (368)
T cd03329 123 REKIPAYAS--TMVGDDL-EGLE--------SPEAYADFAEECKALGYRAIK----LHPWG-----------PGVVRRDL 176 (368)
T ss_pred ccceeEEEe--cCCCccc-ccCC--------CHHHHHHHHHHHHHcCCCEEE----EecCC-----------chhHHHHH
Confidence 567777543 2111000 0000 011223334333333454443 22110 01123345
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQD 307 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~ 307 (445)
+.++.+|+++ | +++.|++|+| +.||.++++++ .+.++++++.|||||++++
T Consensus 177 ~~i~~vR~~~---G--~~~~l~vDan-----------------------~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~ 227 (368)
T cd03329 177 KACLAVREAV---G--PDMRLMHDGA-----------------------HWYSRADALRL-GRALEELGFFWYEDPLREA 227 (368)
T ss_pred HHHHHHHHHh---C--CCCeEEEECC-----------------------CCcCHHHHHHH-HHHhhhcCCCeEeCCCCch
Confidence 6666666655 5 5899999993 67889999987 4567899999999999999
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccC-HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTN-PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~-~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et 386 (445)
|++++++|+++++ +||++||+. .+ +++++++++.+++|++|+|++++||||++++++++|+++|+++++ |.+
T Consensus 228 d~~~~~~l~~~~~--ipIa~~E~~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~-h~~--- 300 (368)
T cd03329 228 SISSYRWLAEKLD--IPILGTEHS-RGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVEL-HGN--- 300 (368)
T ss_pred hHHHHHHHHhcCC--CCEEccCcc-cCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEE-ECh---
Confidence 9999999999998 999999985 55 999999999999999999999999999999999999999999865 532
Q ss_pred hhhHHHHHHhhhc
Q 043137 387 EDTFIADLSVGLA 399 (445)
Q Consensus 387 ~~~~~~~la~a~~ 399 (445)
.++.+|++.+++
T Consensus 301 -~~a~~hlaaa~~ 312 (368)
T cd03329 301 -GAANLHVIAAIR 312 (368)
T ss_pred -HHHHHHHHhcCC
Confidence 456678877754
No 26
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=2.1e-42 Score=343.91 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=214.8
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+|++|++|||++...+. +.|.+++...+...+++.++|.|+| ++.+++++++.|. ..
T Consensus 21 ~~~~lV~v~~~~G~~G~GE~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~-~~ 85 (324)
T TIGR01928 21 RDCLIIELIDDKGNAGFGEVVAFQT-------------PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVR-SL 85 (324)
T ss_pred CcEEEEEEEECCCCeEEEeccccCC-------------CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH-Hc
Confidence 4668899999999999997542110 1244555666666777888999999 9999999998887 33
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
.+ ...|++||||||||+.||.+|+|||+||| | .++++|++ .++ |..
T Consensus 86 ~~------------~~~a~said~AlwDl~gk~~g~Pl~~llG---g-~~~~i~~y--~~~--~~~-------------- 131 (324)
T TIGR01928 86 KG------------TPMAKAGLEMALWDMYHKLPSFSLAYGQG---K-LRDKAPAG--AVS--GLA-------------- 131 (324)
T ss_pred cC------------CcHHHHHHHHHHHHHHHhhhCCcHHHHhC---C-CCCeEEEe--EEc--CCC--------------
Confidence 11 13599999999999999999999999999 8 45677764 332 210
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.+++..+++.+...++|+.+| .|+| + +.+.+.++.+|+++ +++.|++|+|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~------~~~~l~vDaN----- 181 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF------PQIPLVIDAN----- 181 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC------CCCcEEEECC-----
Confidence 112334455555555665554 3322 1 22355565555543 5789999993
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~ 338 (445)
+.||.+++ .+ .+.+++|++.|||||++++|++++++|+++++ +||++||+. .+++++
T Consensus 182 ------------------~~~~~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~--~pia~dEs~-~~~~~~ 238 (324)
T TIGR01928 182 ------------------ESYDLQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTI--TPICLDESI-TSLDDA 238 (324)
T ss_pred ------------------CCCCHHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcC--CCEeeCCCc-CCHHHH
Confidence 56788775 44 56789999999999999999999999999998 999999984 679999
Q ss_pred HHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCC
Q 043137 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~ 407 (445)
+++++.+++|++|+|++++||||++++++++|+++|++++++++ .|++++.++.++++...++...|.
T Consensus 239 ~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~-~es~i~~aa~~hla~~~~~~~~~~ 306 (324)
T TIGR01928 239 RNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGM-LETGISRAFNVALASLGGNDYPGD 306 (324)
T ss_pred HHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcce-EcccHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999988764 588776555444444344444443
No 27
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.2e-42 Score=348.46 Aligned_cols=279 Identities=18% Similarity=0.222 Sum_probs=215.1
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|||+|++|++|||++...+. +.|.+++...+...+++.+.|.|+|+|+.+++++|+.|. .+
T Consensus 24 ~~~~~Vrv~t~~G~~G~GE~~~~~~-------------~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~-~~ 89 (354)
T cd03317 24 REFLIVELTDEEGITGYGEVVAFEG-------------PFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLA-PI 89 (354)
T ss_pred eeEEEEEEEECCCCeEEEecCCCCC-------------CcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-Hh
Confidence 3568899999999999997543210 125566666777778888999999999999999999988 43
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
.+ ...|++||||||||+.||.+|+|+|+||| | .+.++|++. +++.+ +.
T Consensus 90 ~~------------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG---g-~~~~v~~~~--s~~~~-------~~------- 137 (354)
T cd03317 90 KG------------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG---G-TRDSIPVGV--SIGIQ-------DD------- 137 (354)
T ss_pred cC------------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCeEEeeE--EEeCC-------Cc-------
Confidence 21 13599999999999999999999999999 8 456777643 32111 00
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.++..+++.+...++|+++| +|+| + +.+.++++.+|+++ +++.|++|+|
T Consensus 138 -~~~~~~~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~------g~~~l~lDaN----- 186 (354)
T cd03317 138 -VEQLLKQIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF------PDIPLMADAN----- 186 (354)
T ss_pred -HHHHHHHHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC------CCCeEEEECC-----
Confidence 02223444444444565554 3322 1 23456666665554 4789999993
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~ 338 (445)
+.||.+++. + .+.+++|++.|||||++++|++++++|+++++ +||++||+. .+++++
T Consensus 187 ------------------~~~~~~~a~-~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--~pia~dEs~-~~~~~~ 243 (354)
T cd03317 187 ------------------SAYTLADIP-L-LKRLDEYGLLMIEQPLAADDLIDHAELQKLLK--TPICLDESI-QSAEDA 243 (354)
T ss_pred ------------------CCCCHHHHH-H-HHHhhcCCccEEECCCChhHHHHHHHHHhhcC--CCEEeCCcc-CCHHHH
Confidence 568888874 5 46689999999999999999999999999998 999999984 679999
Q ss_pred HHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhh
Q 043137 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGL 398 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~ 398 (445)
+++++.+++|++|+|++++||||++++++++|+++|+++++++ +.|+..+.+++++++.
T Consensus 244 ~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~-~~es~l~~~a~~hla~ 302 (354)
T cd03317 244 RKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGG-MLESGIGRAHNVALAS 302 (354)
T ss_pred HHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecC-cccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998877 4688887766666553
No 28
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=2.2e-42 Score=348.95 Aligned_cols=306 Identities=20% Similarity=0.243 Sum_probs=222.2
Q ss_pred EEEEEEEEEEecCC--------CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhH
Q 043137 4 TITAVKARQIFDSR--------GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAII 75 (445)
Q Consensus 4 kI~~v~~~~v~~~~--------g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l 75 (445)
||++|+++.+..+. .+..++|+|+|++|++|||++...+. .......+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--------------------~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--------------------PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCEEEEeccCCCC--------------------chHHHHHHHHHH
Confidence 68999988775321 24679999999999999997643210 123345677779
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeee
Q 043137 76 GPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPA 155 (445)
Q Consensus 76 ~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~ 155 (445)
+|.|+|+|+.+++++|+.|.+.... .+.+.....|++|||+||||+.||.+|+|||+||| |..+.++|++.
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~------~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~~~v~~~~ 131 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFW------RGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVRDRVRVYA 131 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhccc------CCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccCCceeeEE
Confidence 9999999999999999999832211 11122335799999999999999999999999999 87567777744
Q ss_pred EEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHH
Q 043137 156 FNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNT 235 (445)
Q Consensus 156 ~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 235 (445)
++.++. .+. +...+++.+...++|+.+| .|.|.... .....+.+.+.++.+|+
T Consensus 132 --~~~~~~-----~~~---------~~~~~~a~~~~~~Gf~~~K----ik~g~~~~-------~~~~~~~d~~~v~~ir~ 184 (357)
T cd03316 132 --SGGGYD-----DSP---------EELAEEAKRAVAEGFTAVK----LKVGGPDS-------GGEDLREDLARVRAVRE 184 (357)
T ss_pred --ecCCCC-----CCH---------HHHHHHHHHHHHcCCCEEE----EcCCCCCc-------chHHHHHHHHHHHHHHH
Confidence 321110 001 1223344433334554443 33331000 00002234555555555
Q ss_pred HHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHH
Q 043137 236 AIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 236 av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
++ | +++.|++|+ |+.||.+++++++ +.++++++.|||||++++|++++++|
T Consensus 185 ~~---g--~~~~l~vDa-----------------------N~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l 235 (357)
T cd03316 185 AV---G--PDVDLMVDA-----------------------NGRWDLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARL 235 (357)
T ss_pred hh---C--CCCEEEEEC-----------------------CCCCCHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHH
Confidence 44 5 589999999 3678899999884 56788999999999999999999999
Q ss_pred HHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh--hHHHH
Q 043137 316 TSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED--TFIAD 393 (445)
Q Consensus 316 ~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~--~~~~~ 393 (445)
+++++ +||++||+. .+++++.++++.+++|++|+|++++||++++++++++|+++|++++++++ .+ .+ ++.+|
T Consensus 236 ~~~~~--ipi~~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~-~~-~i~~aa~~h 310 (357)
T cd03316 236 RQATS--VPIAAGENL-YTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA-GG-PIGLAASLH 310 (357)
T ss_pred HHhCC--CCEEecccc-ccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC-CC-HHHHHHHHH
Confidence 99988 999999984 67999999999999999999999999999999999999999999877664 44 44 45567
Q ss_pred HHhhhc
Q 043137 394 LSVGLA 399 (445)
Q Consensus 394 la~a~~ 399 (445)
|+.+++
T Consensus 311 la~a~~ 316 (357)
T cd03316 311 LAAALP 316 (357)
T ss_pred HHHhCc
Confidence 766654
No 29
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.8e-42 Score=349.12 Aligned_cols=310 Identities=15% Similarity=0.188 Sum_probs=214.3
Q ss_pred EEEEEEEEEEec--------CCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIFD--------SRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~~--------~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
|||+|++..+.. +.+ ...++|+|+||+|++|||+++.+ ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~-----------------------~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG-----------------------AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC-----------------------HHHHHHH
Confidence 699999877742 111 36789999999999999865421 1112234
Q ss_pred HHhHhhhhcCCCC-CCHHHHHHHHHHHhccCCCccccccc-------ccchhhHHHHHHHHHHHHHHhcCCchhhhhccc
Q 043137 72 NAIIGPALAGKDP-TEQTAIDNYMVQQLDGTVNEWGWCKQ-------KLGANAILAVSLAVCKAGAHVKKIPLYKHIAEL 143 (445)
Q Consensus 72 ~~~l~p~LiG~d~-~~~e~i~~~l~~~l~~~~~~~~~~~~-------~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~ 143 (445)
..++|.|+|+++ .+.+.+|+.|++.+... . .|+. .+...|++||||||||+.||.+|+|||+|||
T Consensus 58 -~~~~~~llg~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG-- 130 (395)
T cd03323 58 -LEAARSLVGGDVFGAYLAVLESVRVAFADR-D---AGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG-- 130 (395)
T ss_pred -HHHhHHHhCCCcchhhHHHHHHHHHHHhcc-c---ccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC--
Confidence 357899999988 58889999998443210 0 0111 1336799999999999999999999999999
Q ss_pred cCCCcceeeeeeEEeecCcccCCCCc--ccc--eeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCC
Q 043137 144 SGNKNLVLPVPAFNVINGGSHAGNKL--AMQ--EFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGG 218 (445)
Q Consensus 144 ~G~~~~~vp~~~~~~~~gg~~~~~~~--~~~--e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~ 218 (445)
|..++++|+++.....++.+- ... +.. .+.-...+++..+++.+... ++|+++| .|.|.
T Consensus 131 -G~~r~~v~~ya~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG~---------- 194 (395)
T cd03323 131 -GGQRDSVPFLAYLFYKGDRHK-TDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGGV---------- 194 (395)
T ss_pred -CCccCeEEEEEEeeecccccc-ccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecCC----------
Confidence 976778888654211111000 000 000 00000111222333333332 2555544 33331
Q ss_pred CCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee
Q 043137 219 FAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV 298 (445)
Q Consensus 219 ~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~ 298 (445)
.+.+.+.++++++|+++ +++.|++|+ |+.|+.++++++. +.+++ ++.
T Consensus 195 --~~~~~di~~v~avRea~------~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~-~l~ 241 (395)
T cd03323 195 --LPGEEEIEAVKALAEAF------PGARLRLDP-----------------------NGAWSLETAIRLA-KELEG-VLA 241 (395)
T ss_pred --CCHHHHHHHHHHHHHhC------CCCcEEEeC-----------------------CCCcCHHHHHHHH-HhcCc-CCC
Confidence 11123455565555543 579999999 3678999999884 56788 999
Q ss_pred eEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE
Q 043137 299 SIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM 378 (445)
Q Consensus 299 ~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~ 378 (445)
|||||++ |++++++|+++++ +||++||+. ++.++++++++.+++|++|+|++++||||+++|++++|+++|++++
T Consensus 242 ~iEeP~~--d~~~~~~L~~~~~--~PIa~dEs~-~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~ 316 (395)
T cd03323 242 YLEDPCG--GREGMAEFRRATG--LPLATNMIV-TDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWG 316 (395)
T ss_pred EEECCCC--CHHHHHHHHHhcC--CCEEcCCcc-cCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEE
Confidence 9999998 8999999999998 999999984 6799999999999999999999999999999999999999999986
Q ss_pred ecCCCCCChhhH--HHHHHhhh
Q 043137 379 ASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 379 ~~~~~~et~~~~--~~~la~a~ 398 (445)
+ |...|+.++. ++|++.+.
T Consensus 317 ~-h~~~e~~i~~aa~~hlaaa~ 337 (395)
T cd03323 317 M-HSNNHLGISLAMMTHVAAAA 337 (395)
T ss_pred E-ecCcccHHHHHHHHHHHHhC
Confidence 5 5457777664 45665554
No 30
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=351.85 Aligned_cols=297 Identities=21% Similarity=0.277 Sum_probs=215.7
Q ss_pred eEEEEEEEEEEecCC-----C----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHH
Q 043137 3 ITITAVKARQIFDSR-----G----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNA 73 (445)
Q Consensus 3 mkI~~v~~~~v~~~~-----g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~ 73 (445)
|+|+.++........ + +..++|+|+||+|++|||+++...... | ...... .
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~-------------~----~~~~~~---~ 63 (372)
T COG4948 4 MKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRAR-------------Y----GEEAEA---V 63 (372)
T ss_pred eeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCccccc-------------c----hhhhhH---H
Confidence 566666655443211 1 236899999999999999765432100 1 011111 1
Q ss_pred hHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeee
Q 043137 74 IIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPV 153 (445)
Q Consensus 74 ~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~ 153 (445)
.+++.++|+||.+++.+|+.+.+... ++.+++..+|++|||+||||+.||.+|+|||+||| |..++.+++
T Consensus 64 ~~~~~l~g~d~~~i~~~~~~~~~~~~-------~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~ 133 (372)
T COG4948 64 LLAPLLIGRDPFDIERIWQKLYRAGF-------ARRGGITMAAISAVDIALWDLAGKALGVPVYKLLG---GKVRDEVRA 133 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-------cccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CceeeeEEE
Confidence 68999999999999999999984211 11344556899999999999999999999999999 988777776
Q ss_pred eeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHH
Q 043137 154 PAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGV-EVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLEL 232 (445)
Q Consensus 154 ~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~-~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~ 232 (445)
+.+ ..++ +...+...++.+... ++|+.+| .|.|. .+.+.+.+++++
T Consensus 134 y~~--~~~~---------------~~~~e~~~~~~~~~~~~G~~~~K----lk~g~------------~~~~~d~~~v~a 180 (372)
T COG4948 134 YAS--GGGG---------------EDPEEMAAEAARALVELGFKALK----LKVGV------------GDGDEDLERVRA 180 (372)
T ss_pred EEe--cCCC---------------CCCHHHHHHHHHHHHhcCCceEE----ecCCC------------CchHHHHHHHHH
Confidence 443 2111 001122233333322 3565554 34331 111245677777
Q ss_pred HHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHH
Q 043137 233 LNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHY 312 (445)
Q Consensus 233 l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~ 312 (445)
+|+++ | +++.|++|+| +.||..+++++ .+.++++++.|||||++++|++++
T Consensus 181 vRe~~---g--~~~~l~iDan-----------------------~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~ 231 (372)
T COG4948 181 LREAV---G--DDVRLMVDAN-----------------------GGWTLEEAIRL-ARALEEYGLEWIEEPLPPDDLEGL 231 (372)
T ss_pred HHHHh---C--CCceEEEeCC-----------------------CCcCHHHHHHH-HHHhcccCcceEECCCCccCHHHH
Confidence 77766 4 4899999993 67889999987 566889999999999999999999
Q ss_pred HHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH
Q 043137 313 AKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIA 392 (445)
Q Consensus 313 ~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~ 392 (445)
++|++.++ +||++||+. .++++++++++.+++|++|||++++||||++++|+++|+.+++.+ .+|.. +..+..+
T Consensus 232 ~~l~~~~~--~PIa~gEs~-~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v-~~h~~--~~i~~aa 305 (372)
T COG4948 232 RELRAATS--TPIAAGESV-YTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMV-GPHVE--GPISLAA 305 (372)
T ss_pred HHHHhcCC--CCEecCccc-ccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCce-eccCc--hHHHHHH
Confidence 99999998 999999985 669999999999999999999999999999999999999888885 55633 6665555
Q ss_pred HHHhh
Q 043137 393 DLSVG 397 (445)
Q Consensus 393 ~la~a 397 (445)
.++++
T Consensus 306 ~~hla 310 (372)
T COG4948 306 ALHLA 310 (372)
T ss_pred HHHHh
Confidence 44444
No 31
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=3.1e-41 Score=345.99 Aligned_cols=312 Identities=15% Similarity=0.134 Sum_probs=213.3
Q ss_pred EEEEEEEEEEe--cC-----C-----CCceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHH
Q 043137 4 TITAVKARQIF--DS-----R-----GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNV 71 (445)
Q Consensus 4 kI~~v~~~~v~--~~-----~-----g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i 71 (445)
.||++++.+|. |+ . ....++|+|+||+|++|||+++.+ ++. ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~~--------------------~~~---~~~l 61 (441)
T TIGR03247 5 VVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPGG--------------------EKI---RATL 61 (441)
T ss_pred EEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCCeEEEeCCCc--------------------HHH---HHHH
Confidence 56777777662 11 1 234689999999999999976421 112 2334
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccc------cchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 72 NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK------LGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 72 ~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~------~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
+ .++|.|+|+||.+++.+|+.|++.+... . ..+.+. ....|+|||||||||+.||.+|+|||+||| |
T Consensus 62 ~-~lap~LiG~dp~~~e~i~~~m~~~~~~~-~--~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLG---g 134 (441)
T TIGR03247 62 E-DARPLVVGKPLGEYQNVLNDVRATFADR-D--AGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLG---E 134 (441)
T ss_pred H-HHHHHhcCCCHHHHHHHHHHHHHHhhcc-c--ccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhC---C
Confidence 4 6999999999999999999997322100 0 000111 124699999999999999999999999998 5
Q ss_pred C-CcceeeeeeEEeecCcc-------cCCC---Ccccceee--eccCChhcHHHHHHHHHH-HHHHHHHHHHhhcCCCCc
Q 043137 146 N-KNLVLPVPAFNVINGGS-------HAGN---KLAMQEFM--ILPVGASCFKEAMKMGVE-VYHHLKAVIKKKYGQDAT 211 (445)
Q Consensus 146 ~-~~~~vp~~~~~~~~gg~-------~~~~---~~~~~e~~--~~p~~~~~~~~a~~~~~~-~~~~~k~~lk~k~G~~~~ 211 (445)
. .++++|++.++. +.|. +.++ .-...... ....+++..+++.+...+ +|+++| .|+|.
T Consensus 135 g~~r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG~--- 206 (441)
T TIGR03247 135 GQQRDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFK----LKGGV--- 206 (441)
T ss_pred CCccceEEEeeeee-eccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEE----EecCC---
Confidence 3 467788765422 1110 0000 00000000 000122333444443332 565554 34331
Q ss_pred ccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 212 NVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 212 ~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
++.+.+.++++++|+++ +++.|++|+ |+.||.++|+++. +.
T Consensus 207 ---------~~~~~Di~~v~avRea~------~d~~L~vDA-----------------------N~~wt~~~Ai~~~-~~ 247 (441)
T TIGR03247 207 ---------LRGEEEIEAVTALAKRF------PQARITLDP-----------------------NGAWSLDEAIALC-KD 247 (441)
T ss_pred ---------CChHHHHHHHHHHHHhC------CCCeEEEEC-----------------------CCCCCHHHHHHHH-HH
Confidence 11123455555554442 589999999 3678999999984 56
Q ss_pred hccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHH
Q 043137 292 ISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAV 367 (445)
Q Consensus 292 l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia 367 (445)
++++ +.|||||++++| ++++++|+++++ +||++||+. +++++++++++.+++|++|+|+. +||||++++++
T Consensus 248 Le~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~--iPIa~dEs~-~~~~~~~~li~~~avdi~~~d~~-~gGIt~~~kIa 322 (441)
T TIGR03247 248 LKGV-LAYAEDPCGAEQGYSGREVMAEFRRATG--LPTATNMIA-TDWRQMGHALQLQAVDIPLADPH-FWTMQGSVRVA 322 (441)
T ss_pred hhhh-hceEeCCCCcccccchHHHHHHHHHhCC--CCEEcCCcc-CCHHHHHHHHHhCCCCEEeccCC-cchHHHHHHHH
Confidence 7889 999999999998 999999999998 999999984 67999999999999999999995 66899999999
Q ss_pred HHHHHcCCcEEecCCCCCChhh--HHHHHHhhh
Q 043137 368 RMSKQAGWGVMASHRSGETEDT--FIADLSVGL 398 (445)
Q Consensus 368 ~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~ 398 (445)
++|+++|+.+ .+|...++.++ +.+||+.++
T Consensus 323 ~lA~a~Gi~v-~~h~~~~~~i~~aa~~hlaaa~ 354 (441)
T TIGR03247 323 QMCHDWGLTW-GSHSNNHFDISLAMFTHVAAAA 354 (441)
T ss_pred HHHHHcCCEE-EEeCCccCHHHHHHHHHHHHhC
Confidence 9999999996 56755566654 455666554
No 32
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.6e-39 Score=318.82 Aligned_cols=277 Identities=19% Similarity=0.250 Sum_probs=203.7
Q ss_pred ceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 20 ~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
..++|+|+|+ |++|||++...+. |.+++...+...+++ ++|.|+|+|+. ++++++.|. ...
T Consensus 26 ~~~~v~v~t~-G~~G~GE~~~~~~---------------~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~-~~~ 86 (316)
T cd03319 26 ENVIVEIELD-GITGYGEAAPTPR---------------VTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQ-ELL 86 (316)
T ss_pred eEEEEEEEEC-CEEEEEeecCCCC---------------CCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHH-Hhc
Confidence 4588999999 9999997543210 223344555555655 59999999999 999999997 321
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~ 179 (445)
. + ...|++|||+||||+.||.+|+|+|+||| |..+.++|+++. +.++ +.
T Consensus 87 --~-------~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~~~~~~~~~~--~~~~-------~~-------- 135 (316)
T cd03319 87 --P-------G--NGAARAAVDIALWDLEAKLLGLPLYQLWG---GGAPRPLETDYT--ISID-------TP-------- 135 (316)
T ss_pred --c-------C--ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCCceeEEE--EeCC-------CH--------
Confidence 0 1 24599999999999999999999999976 666677776432 2211 11
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccccc
Q 043137 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYG 259 (445)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~ 259 (445)
+...+.+.+...++|+.+| .|+|. +.+.+.+.++.+|+++ | ++.|++|+|
T Consensus 136 -~~~~~~~~~~~~~Gf~~iK----ik~g~-------------~~~~d~~~v~~lr~~~---g---~~~l~vD~n------ 185 (316)
T cd03319 136 -EAMAAAAKKAAKRGFPLLK----IKLGG-------------DLEDDIERIRAIREAA---P---DARLRVDAN------ 185 (316)
T ss_pred -HHHHHHHHHHHHcCCCEEE----EEeCC-------------ChhhHHHHHHHHHHhC---C---CCeEEEeCC------
Confidence 1112233333333454443 34331 1123345555554443 3 688999993
Q ss_pred CCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHH
Q 043137 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVE 339 (445)
Q Consensus 260 ~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~ 339 (445)
++|+.++++++ .+.++++++.|||||++++|++++++|+++++ +||++||+. .++++++
T Consensus 186 -----------------~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~--ipIa~~E~~-~~~~~~~ 244 (316)
T cd03319 186 -----------------QGWTPEEAVEL-LRELAELGVELIEQPVPAGDDDGLAYLRDKSP--LPIMADESC-FSAADAA 244 (316)
T ss_pred -----------------CCcCHHHHHHH-HHHHHhcCCCEEECCCCCCCHHHHHHHHhcCC--CCEEEeCCC-CCHHHHH
Confidence 56888999988 45688999999999999999999999999998 999999984 6799999
Q ss_pred HHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHH--HHHHhhh
Q 043137 340 KAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFI--ADLSVGL 398 (445)
Q Consensus 340 ~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~--~~la~a~ 398 (445)
++++.+++|++|+|++++||+|++++++++|+++|++++++++ .|++++.+ +||+.++
T Consensus 245 ~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~-~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 245 RLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCM-VESSLSIAAAAHLAAAK 304 (316)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECc-hhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999877654 48876654 4665553
No 33
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=2.7e-36 Score=299.67 Aligned_cols=263 Identities=16% Similarity=0.183 Sum_probs=189.2
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+ ++|++|||++...+ .| +++...+...+. .+.|.|+ . ..+.+. +. .+
T Consensus 27 ~~~~lv~l~-~~G~~G~GE~~p~~---------------~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~----~~-~~ 81 (321)
T PRK15129 27 ARVVVVELE-EEGIKGTGECTPYP---------------RY-GESDASVMAQIM-SVVPQLE-K-GLTREA----LQ-KL 81 (321)
T ss_pred eeEEEEEEE-eCCeEEEEeeCCcC---------------CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHH----HH-hh
Confidence 456899998 68999999654322 13 345566666664 6889987 2 222333 22 21
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
.+ ...|++||||||||+.||..|+|||+||| |..+.++|++. +++.+
T Consensus 82 ~~------------~~~a~~aid~AlwDl~gk~~~~pl~~llG---g~~~~~i~~~~--~~~~~---------------- 128 (321)
T PRK15129 82 LP------------AGAARNAVDCALWDLAARQQQQSLAQLIG---ITLPETVTTAQ--TVVIG---------------- 128 (321)
T ss_pred cc------------ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeEEE--EecCC----------------
Confidence 11 13599999999999999999999999999 87666677532 22111
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
.+++.++++.+...++|+++| .|+| + +.+.+.++.+|+++ +++.|++|+
T Consensus 129 ~~~~~~~~~~~~~~~G~~~~K----lKv~-------------~--~~d~~~v~avr~~~------~~~~l~vDa------ 177 (321)
T PRK15129 129 TPEQMANSASALWQAGAKLLK----VKLD-------------N--HLISERMVAIRSAV------PDATLIVDA------ 177 (321)
T ss_pred CHHHHHHHHHHHHHcCCCEEE----EeCC-------------C--chHHHHHHHHHHhC------CCCeEEEEC------
Confidence 011223444444444555544 3322 1 12356666665543 478999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV 338 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~ 338 (445)
|++||.+++++++ +.++++++.|||||++++|++++++++ ++ +||+.||+. .+++++
T Consensus 178 -----------------N~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~l~~~~--~~--~pia~dEs~-~~~~d~ 234 (321)
T PRK15129 178 -----------------NESWRAEGLAARC-QLLADLGVAMLEQPLPAQDDAALENFI--HP--LPICADESC-HTRSSL 234 (321)
T ss_pred -----------------CCCCCHHHHHHHH-HHHHhcCceEEECCCCCCcHHHHHHhc--cC--CCEecCCCC-CCHHHH
Confidence 4678999999874 567899999999999999999988765 45 999999985 669999
Q ss_pred HHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHh
Q 043137 339 EKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSV 396 (445)
Q Consensus 339 ~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~ 396 (445)
+++. +++|++|+|++++|||+++++++++|+++|+++++++ +.|+..+..+.+++
T Consensus 235 ~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~-~~es~i~~~a~~~l 289 (321)
T PRK15129 235 KALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGC-MLCTSRAISAALPL 289 (321)
T ss_pred HHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEec-chHHHHHHHHHHHH
Confidence 9984 7999999999999999999999999999999999988 46887765555555
No 34
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=7.2e-35 Score=282.34 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHH
Q 043137 118 LAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHH 197 (445)
Q Consensus 118 sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~ 197 (445)
+|||+||||+.||.+|+|+|+||| | .++++|++. +++.+ +. ++..+++.+...++|+.
T Consensus 46 ~aid~Al~Dl~gk~~g~pv~~llG---~-~~~~i~~~~--~~~~~-------~~---------~~~~~~~~~~~~~G~~~ 103 (265)
T cd03315 46 AAVDMALWDLWGKRLGVPVYLLLG---G-YRDRVRVAH--MLGLG-------EP---------AEVAEEARRALEAGFRT 103 (265)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHcC---C-CCCceEEEE--EecCC-------CH---------HHHHHHHHHHHHCCCCE
Confidence 799999999999999999999999 7 456677643 22211 11 12233343333334544
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCC
Q 043137 198 LKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQ 277 (445)
Q Consensus 198 ~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~ 277 (445)
+| .|.|. .+ +.+.+.++.+|+++ | +++.|++|+ |+
T Consensus 104 ~K----iKvg~-----------~~--~~d~~~v~~vr~~~---g--~~~~l~vDa-----------------------n~ 138 (265)
T cd03315 104 FK----LKVGR-----------DP--ARDVAVVAALREAV---G--DDAELRVDA-----------------------NR 138 (265)
T ss_pred EE----EecCC-----------CH--HHHHHHHHHHHHhc---C--CCCEEEEeC-----------------------CC
Confidence 43 33331 11 23455555555544 4 589999999 35
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
+||.++++++. +.++++++.|||||++++|++++++|+++++ +||++||+. .++++++++++.+++|++|+|++++
T Consensus 139 ~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~--ipia~dE~~-~~~~~~~~~i~~~~~d~v~~k~~~~ 214 (265)
T cd03315 139 GWTPKQAIRAL-RALEDLGLDYVEQPLPADDLEGRAALARATD--TPIMADESA-FTPHDAFRELALGAADAVNIKTAKT 214 (265)
T ss_pred CcCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhhCC--CCEEECCCC-CCHHHHHHHHHhCCCCEEEEecccc
Confidence 78899999884 5678899999999999999999999999998 999999985 6799999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH--HHHhhh
Q 043137 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIA--DLSVGL 398 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~--~la~a~ 398 (445)
||||++++++++|+++|+++++++ +.|+.++.++ |+|.++
T Consensus 215 GGi~~~~~~~~~A~~~gi~~~~~~-~~~s~i~~~a~~hlaa~~ 256 (265)
T cd03315 215 GGLTKAQRVLAVAEALGLPVMVGS-MIESGLGTLANAHLAAAL 256 (265)
T ss_pred cCHHHHHHHHHHHHHcCCcEEecC-ccchHHHHHHHHHHHHhC
Confidence 999999999999999999998775 4588766544 555554
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=1.2e-33 Score=268.00 Aligned_cols=176 Identities=22% Similarity=0.314 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHH
Q 043137 118 LAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHH 197 (445)
Q Consensus 118 sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~ 197 (445)
+|||+||||+.||.+|+|||++|| |..+.++|++. .
T Consensus 45 ~aid~Al~Dl~gk~~~~pl~~llg---g~~~~~v~~~~-----------------------------~------------ 80 (229)
T cd00308 45 SGIDMALWDLAAKALGVPLAELLG---GGSRDRVPAYG-----------------------------S------------ 80 (229)
T ss_pred HHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceeccH-----------------------------H------------
Confidence 899999999999999999999999 87666666521 0
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCC
Q 043137 198 LKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQ 277 (445)
Q Consensus 198 ~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~ 277 (445)
.+.++.+|+++ | +++.|++|+| +
T Consensus 81 -----------------------------~~~i~~lr~~~---g--~~~~l~lDaN-----------------------~ 103 (229)
T cd00308 81 -----------------------------IERVRAVREAF---G--PDARLAVDAN-----------------------G 103 (229)
T ss_pred -----------------------------HHHHHHHHHHh---C--CCCeEEEECC-----------------------C
Confidence 12344455555 4 4899999993 5
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
.||.+++++++ +.++++++.|||||++++|++++++|+++++ +||++||+. ++++++.++++.+++|++|+|++++
T Consensus 104 ~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~--~pIa~dEs~-~~~~~~~~~~~~~~~d~~~~k~~~~ 179 (229)
T cd00308 104 AWTPKEAIRLI-RALEKYGLAWIEEPCAPDDLEGYAALRRRTG--IPIAADESV-TTVDDALEALELGAVDILQIKPTRV 179 (229)
T ss_pred CCCHHHHHHHH-HHhhhcCCCeEECCCCccCHHHHHHHHhhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEecCcccc
Confidence 78899999985 5578899999999999999999999999988 999999984 6799999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
||++++++++++|+++|++++++++ .++..+ +.+|++.+++
T Consensus 180 GGi~~~~~i~~~a~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~~ 222 (229)
T cd00308 180 GGLTESRRAADLAEAFGIRVMVHGT-LESSIGTAAALHLAAALP 222 (229)
T ss_pred CCHHHHHHHHHHHHHcCCEEeecCC-CCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999987664 576655 4556655543
No 36
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.2e-33 Score=273.35 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHH
Q 043137 117 ILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYH 196 (445)
Q Consensus 117 ~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~ 196 (445)
++||||||||+.||..| | |..+.++|++ .+++.+ +. ...+++.+...++|+
T Consensus 49 ~aaid~AlwDl~gk~~g-------g---g~~~~~v~~~--~~~~~~-------~~----------~~~~~~~~~~~~Gf~ 99 (263)
T cd03320 49 AFGIESALANLEALLVG-------F---TRPRNRIPVN--ALLPAG-------DA----------AALGEAKAAYGGGYR 99 (263)
T ss_pred HHHHHHHHhcccccccC-------C---CCCccCccee--EEecCC-------CH----------HHHHHHHHHHhCCCC
Confidence 38999999999999999 7 7766677764 333221 00 112333333334555
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCC
Q 043137 197 HLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGS 276 (445)
Q Consensus 197 ~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~ 276 (445)
.+| .|+|. .+.+.+.+.++.+|+++ | +++.|++|+|
T Consensus 100 ~~K----iKvg~------------~~~~~d~~~v~~vr~~~---g--~~~~l~vDaN----------------------- 135 (263)
T cd03320 100 TVK----LKVGA------------TSFEEDLARLRALREAL---P--ADAKLRLDAN----------------------- 135 (263)
T ss_pred EEE----EEECC------------CChHHHHHHHHHHHHHc---C--CCCeEEEeCC-----------------------
Confidence 544 34431 11123455555555543 4 4899999993
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+.||.++++++ .+.++++++.|||||++++|++++++|+ ++ +||++||+. .+++++.++++.+++|++|+|+++
T Consensus 136 ~~w~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~--~PIa~dEs~-~~~~~~~~~~~~~~~d~v~~k~~~ 209 (263)
T cd03320 136 GGWSLEEALAF-LEALAAGRIEYIEQPLPPDDLAELRRLA--AG--VPIALDESL-RRLDDPLALAAAGALGALVLKPAL 209 (263)
T ss_pred CCCCHHHHHHH-HHhhcccCCceEECCCChHHHHHHHHhh--cC--CCeeeCCcc-ccccCHHHHHhcCCCCEEEECchh
Confidence 57889999987 4567899999999999999999999999 66 999999985 568999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 357 ~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+||+|++++++++|+++|+++++++ +.|+.++. ++|++.++.
T Consensus 210 ~GGit~~~~i~~~a~~~gi~~~~~~-~~es~ig~aa~~hlaa~~~ 253 (263)
T cd03320 210 LGGPRALLELAEEARARGIPAVVSS-ALESSIGLGALAHLAAALP 253 (263)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEc-chhhHHHHHHHHHHHHhCC
Confidence 9999999999999999999998876 45776654 456666544
No 37
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=6.3e-33 Score=273.54 Aligned_cols=258 Identities=16% Similarity=0.169 Sum_probs=184.5
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+ ++|++|||++... +.|++++...+...+. .+.|.|+|+++.++. . .
T Consensus 21 ~~~~iv~l~-~~G~~G~GE~~p~---------------~~~~~et~~~~~~~l~-~l~~~l~~~~~~~~~------~-~- 75 (307)
T TIGR01927 21 REGLIVRLT-DEGRTGWGEIAPL---------------PGFGTETLAEALDFCR-ALIEEITRGDIEAID------D-Q- 75 (307)
T ss_pred eeEEEEEEE-ECCcEEEEEeecC---------------CCCCcccHHHHHHHHH-HHHHHhcccchhhcc------c-c-
Confidence 356999999 5699999965321 2366788888877777 488999998875332 1 0
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
...+++|||+||||+.||. +.|. ....|. ++ +..+ +
T Consensus 76 --------------~~~~~~aie~Al~Dl~~k~-~~~~-----------~~~~~~--~~-l~~~-------~-------- 111 (307)
T TIGR01927 76 --------------LPSVAFGFESALIELESGD-ELPP-----------ASNYYV--AL-LPAG-------D-------- 111 (307)
T ss_pred --------------CcHHHHHHHHHHHHHhcCC-CCCc-----------ccccce--ee-ccCC-------C--------
Confidence 0257999999999999997 2111 111222 22 1111 0
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
+++..+++.+ .++|+.+| .|+|. .+.+.+.+.++.+|+++ | +++.|++|+
T Consensus 112 -~~~~~~~~~~--~~Gf~~~K----iKvG~------------~~~~~d~~~v~~vr~~~---g--~~~~l~vDa------ 161 (307)
T TIGR01927 112 -PALLLLRSAK--AEGFRTFK----WKVGV------------GELAREGMLVNLLLEAL---P--DKAELRLDA------ 161 (307)
T ss_pred -HHHHHHHHHH--hCCCCEEE----EEeCC------------CChHHHHHHHHHHHHHc---C--CCCeEEEeC------
Confidence 1112223322 34555443 34331 11233455666555544 4 479999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~ 335 (445)
|+.||.++++++. +.+++ +++.|||||++.+ +++++|+++++ +||++||+. .++
T Consensus 162 -----------------N~~w~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~--~Pia~dEs~-~~~ 218 (307)
T TIGR01927 162 -----------------NGGLSPDEAQQFL-KALDPNLRGRIAFLEEPLPDA--DEMSAFSEATG--TAIALDESL-WEL 218 (307)
T ss_pred -----------------CCCCCHHHHHHHH-HhcccccCCCceEEeCCCCCH--HHHHHHHHhCC--CCEEeCCCc-CCh
Confidence 3678999999884 56787 8999999999866 89999999998 999999985 569
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHhhhc
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLA 399 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~--~~~~la~a~~ 399 (445)
++++++++.+++|++|+|++++||++++++++++|+++|++++++++ .||.++ +++||+.+++
T Consensus 219 ~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~-~es~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 219 PQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSV-FESSIALGQLARLAAKLS 283 (307)
T ss_pred HHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECc-cchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998874 588765 4567766654
No 38
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=9e-32 Score=266.95 Aligned_cols=258 Identities=13% Similarity=0.128 Sum_probs=177.8
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+|++|++|||++.+. +.|++++...+...++ .+.|.|.+++ ++. ... .
T Consensus 28 ~~~~iV~l~~~~G~~G~GE~~p~---------------p~~~~et~~~~~~~l~-~l~~~l~~~~---~~~---~~~-~- 83 (320)
T PRK02714 28 REGIILRLTDETGKIGWGEIAPL---------------PWFGSETLEEALAFCQ-QLPGEITPEQ---IFS---IPD-A- 83 (320)
T ss_pred eEEEEEEEEeCCCCeEEEEecCC---------------CCCCcccHHHHHHHHH-hccccCCHHH---HHh---hhh-c-
Confidence 46699999999999999965431 2366777777776665 4778775432 111 111 1
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHH-HHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeec
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCK-AGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD-~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~ 177 (445)
...+++|+|+| || +.++. +.. .. .++|.+..+.
T Consensus 84 --------------~~~~~~aie~A-~d~~~~~~---~~~---------~~--~~~~~~~~i~----------------- 117 (320)
T PRK02714 84 --------------LPACQFGFESA-LENESGSR---SNV---------TL--NPLSYSALLP----------------- 117 (320)
T ss_pred --------------CCHHHHHHHHH-HHHHhccc---ccC---------Cc--CCCceeeecC-----------------
Confidence 12589999999 66 43332 111 11 1233332221
Q ss_pred cCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEecccccc
Q 043137 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEF 257 (445)
Q Consensus 178 p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~ 257 (445)
.+++..+++.+...++|+.+| .|+|. .+.+.+.++++.+|+++ | +++.|++|+
T Consensus 118 -~~~~~~~~a~~~~~~G~~~~K----vKvG~------------~~~~~d~~~v~air~~~---g--~~~~l~vDa----- 170 (320)
T PRK02714 118 -AGEAALQQWQTLWQQGYRTFK----WKIGV------------DPLEQELKIFEQLLERL---P--AGAKLRLDA----- 170 (320)
T ss_pred -CCHHHHHHHHHHHHcCCCEEE----EEECC------------CChHHHHHHHHHHHHhc---C--CCCEEEEEC-----
Confidence 112234455444445565544 44441 11122345555555443 5 589999999
Q ss_pred ccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccC
Q 043137 258 YGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTN 334 (445)
Q Consensus 258 ~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~ 334 (445)
|++||.+++++++ +.+++ +++.|||||++++|++++++|+++++ +||++||+. .+
T Consensus 171 ------------------N~~w~~~~A~~~~-~~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~--~Pia~DEs~-~~ 228 (320)
T PRK02714 171 ------------------NGGLSLEEAKRWL-QLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQ--TPIALDESV-AN 228 (320)
T ss_pred ------------------CCCCCHHHHHHHH-HHHhhccCCCccEEECCCCcccHHHHHHHHHhCC--CCEEECCcc-CC
Confidence 3678999999874 45676 79999999999999999999999998 999999985 67
Q ss_pred HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhhc
Q 043137 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGLA 399 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~~ 399 (445)
+++++++++.+++|++|+|++++||+++++ ++|+++|++++++++ .||.++. .+||+.++.
T Consensus 229 ~~d~~~~~~~~a~d~v~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~-~es~ig~aa~~hlaa~~~ 291 (320)
T PRK02714 229 LAQLQQCYQQGWRGIFVIKPAIAGSPSRLR---QFCQQHPLDAVFSSV-FETAIGRKAALALAAELS 291 (320)
T ss_pred HHHHHHHHHcCCCCEEEEcchhcCCHHHHH---HHHHHhCCCEEEEec-hhhHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999654 679999999999875 5887664 456666654
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=2.4e-31 Score=310.53 Aligned_cols=303 Identities=15% Similarity=0.110 Sum_probs=200.2
Q ss_pred ceEEEEEEEEEEec--------CCC------CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCc-cHHH
Q 043137 2 AITITAVKARQIFD--------SRG------NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK-GVSK 66 (445)
Q Consensus 2 ~mkI~~v~~~~v~~--------~~g------~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~-~~~~ 66 (445)
.|||++|+.+.+.. +.| +..++|+|+||+|++|||++...+..+ |.. ...+ ....
T Consensus 930 ~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~--et~--------~~~~~~l~~ 999 (1655)
T PLN02980 930 LCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHE--EDL--------LDVEEQLRF 999 (1655)
T ss_pred cceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCCc--ccc--------ccHHHHHHH
Confidence 48999999987742 222 456899999999999999654322211 110 0000 0111
Q ss_pred HHHHH----HHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhcc
Q 043137 67 AVSNV----NAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAE 142 (445)
Q Consensus 67 a~~~i----~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~ 142 (445)
....+ .+.++|.|+|+++ +.+++.+. ... +.....|++||||||||+.||.+|+|||+|||
T Consensus 1000 ~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~-~~~----------~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLG- 1064 (1655)
T PLN02980 1000 LLHVIKGAKISFMLPLLKGSFS---SWIWSELG-IPP----------SSIFPSVRCGLEMAILNAIAVRHGSSLLNILD- 1064 (1655)
T ss_pred HHHHHhhhhhhhhhHhhcCcch---HHHHHHhh-ccc----------cccchHHHHHHHHHHHHHHHHHcCCcHHHHhC-
Confidence 11112 1356899999954 44444443 111 12236799999999999999999999999999
Q ss_pred ccCCCcceee-------eeeEEeecCcccCCCCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q 043137 143 LSGNKNLVLP-------VPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGD 215 (445)
Q Consensus 143 ~~G~~~~~vp-------~~~~~~~~gg~~~~~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~ 215 (445)
|. +.+.+ +|++..+ ++. ..+++..+++.+...++|+.+| .|+|.
T Consensus 1065 --g~-~~~~~~~~~~~~v~v~~~~-~~~--------------~~~~~~~~~a~~~~~~Gf~~~K----lKvG~------- 1115 (1655)
T PLN02980 1065 --PY-QKDENGSEQSHSVQICALL-DSN--------------GSPLEVAYVARKLVEEGFSAIK----LKVGR------- 1115 (1655)
T ss_pred --CC-CCCcceeccccceeeeecc-CCC--------------CCHHHHHHHHHHHHHcCCCEEE----EecCC-------
Confidence 73 22121 1222221 010 0112223444444444555443 34331
Q ss_pred CCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccC
Q 043137 216 EGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDY 295 (445)
Q Consensus 216 ~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~ 295 (445)
..+.+.+.++++.+|+++ | +++.|++|+ |++||.++|++++ +.++++
T Consensus 1116 ----~~~~~~D~~~i~alRe~~---G--~~~~LrlDA-----------------------N~~ws~~~A~~~~-~~L~~~ 1162 (1655)
T PLN02980 1116 ----RVSPIQDAAVIQEVRKAV---G--YQIELRADA-----------------------NRNWTYEEAIEFG-SLVKSC 1162 (1655)
T ss_pred ----CCCHHHHHHHHHHHHHHc---C--CCCeEEEEC-----------------------CCCCCHHHHHHHH-HHHhhc
Confidence 011233345555555544 5 589999999 3679999999985 567889
Q ss_pred CeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHH-----HHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 296 PIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPK-----RVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 296 ~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~-----~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
++.|||||++ +.+++++|+++++ +||++||+.. +++ .++++++.++. .+++|++++||++++++++++|
T Consensus 1163 ~i~~iEqPl~--~~~~l~~l~~~~~--iPIA~DEs~~-~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~~~~ia~~A 1236 (1655)
T PLN02980 1163 NLKYIEEPVQ--DEDDLIKFCEETG--LPVALDETID-KFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFENAALIARWA 1236 (1655)
T ss_pred CCCEEECCCC--CHHHHHHHHHhCC--CCEEeCCCcC-CcccchHHHHHHHHHCCCe-EEEeChhhhCCHHHHHHHHHHH
Confidence 9999999997 5789999999998 9999999854 344 46777777655 7899999999999999999999
Q ss_pred HHcCCcEEecCCCCCChhhH--HHHHHhhh
Q 043137 371 KQAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 371 ~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
+++|+++++++ +.|+.++. .+|||..+
T Consensus 1237 ~~~gi~~~~~s-~~es~Ig~aA~~hlaa~~ 1265 (1655)
T PLN02980 1237 QQHGKMAVISA-AYESGLGLSAYIQFASYL 1265 (1655)
T ss_pred HHcCCeEEecC-cccCHHHHHHHHHHHHhc
Confidence 99999998876 46887654 55665553
No 40
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=99.97 E-value=2.7e-29 Score=249.32 Aligned_cols=252 Identities=16% Similarity=0.188 Sum_probs=177.7
Q ss_pred CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHh
Q 043137 19 NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL 98 (445)
Q Consensus 19 ~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l 98 (445)
+..++|+|+ |+|++|||++... +.|++++..++...+.+.+.|.+. .++.+ +. .
T Consensus 27 ~~~viV~l~-d~G~~G~GE~~p~---------------~~~~~et~~~~~~~l~~~~~~~~~-~~~~~-------~~-~- 80 (322)
T PRK05105 27 RDGLVVQLR-EGEREGWGEIAPL---------------PGFSQETLEEAQEALLAWLNNWLA-GDCDD-------EL-S- 80 (322)
T ss_pred eeeEEEEEE-ECCcEEEEEeCCC---------------CCCCccCHHHHHHHHHHHHHHhhc-Ccccc-------cc-c-
Confidence 467999996 8999999965432 136788888888888887877654 44433 11 1
Q ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccCCCcceeeeeeEEeecCcccCCCCcccceeeecc
Q 043137 99 DGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILP 178 (445)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~~~~~e~~~~p 178 (445)
....+++++++|+||+.||..+.|++.. .++ +.+ +.
T Consensus 81 -------------~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l------~~~-------~~------- 116 (322)
T PRK05105 81 -------------QYPSVAFGLSCALAELAGTLPQAANYRT-----------APL------CYG-------DP------- 116 (322)
T ss_pred -------------cCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eee------ecC-------CH-------
Confidence 0135889999999999999888887521 111 101 01
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCccChHHHHHHHHHHHHHhCCCCCeEEEEeccccccc
Q 043137 179 VGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258 (445)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~~~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~ 258 (445)
++..+++.+. ++|+.+| .|+|. .+.+.+.+.++.+|+++ +++.|++|+
T Consensus 117 --~~~~~~a~~~--~Gf~~~K----vKvG~------------~~~~~d~~~i~~vr~~~------~~~~l~vDa------ 164 (322)
T PRK05105 117 --DELILKLADM--PGEKVAK----VKVGL------------YEAVRDGMLVNLLLEAI------PDLKLRLDA------ 164 (322)
T ss_pred --HHHHHHHHHc--CCCCEEE----EEECC------------CCHHHHHHHHHHHHHhC------CCCeEEEEC------
Confidence 1223344332 4565554 44441 11222345555444432 578999999
Q ss_pred cCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc---CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCH
Q 043137 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD---YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335 (445)
Q Consensus 259 ~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~---~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~ 335 (445)
|+.||.+++++++ +.+++ +++.|||||++. .+++++|+++++ +||+.||+. .++
T Consensus 165 -----------------N~~w~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~--~PIa~DEs~-~~~ 221 (322)
T PRK05105 165 -----------------NRGWTLEKAQQFA-KYVPPDYRHRIAFLEEPCKT--PDDSRAFARATG--IAIAWDESL-REP 221 (322)
T ss_pred -----------------CCCCCHHHHHHHH-HHhhhhcCCCccEEECCCCC--HHHHHHHHHhCC--CCEEECCCC-Cch
Confidence 3678999999985 45777 999999999964 568999999998 999999986 455
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHhhh
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTF--IADLSVGL 398 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~--~~~la~a~ 398 (445)
+ ++..+ .+++|++|||++++||++++++++++|+++|+++++++ +.|+.++. .+||+.++
T Consensus 222 ~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~-~~es~i~~aa~~hla~~~ 283 (322)
T PRK05105 222 D-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISS-SIESSLGLTQLARLAAWL 283 (322)
T ss_pred h-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEEC-chhHHHHHHHHHHHHHhc
Confidence 4 44444 77899999999999999999999999999999998886 46887664 44665554
No 41
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=99.96 E-value=1.3e-28 Score=210.74 Aligned_cols=131 Identities=69% Similarity=0.967 Sum_probs=113.9
Q ss_pred EEEEEEEEEEecCCCCceEEEEEEeCCCceEEEeccCCCccccccceeeccCC-CCCCCccHHHHHHHHHHhHhhhhcCC
Q 043137 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK 82 (445)
Q Consensus 4 kI~~v~~~~v~~~~g~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~-~~y~~~~~~~a~~~i~~~l~p~LiG~ 82 (445)
||++|++|+|+||+|+|||+|+|+|++|.+|++++|+|.|+|.+|+.+++|++ ..|+|+++..+++.|++.|+|.|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999998 44999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhh
Q 043137 83 DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHI 140 (445)
Q Consensus 83 d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lL 140 (445)
+|.||++||+.|. .+++++| .+.+|.|++.|+|+|++.+.|+..++|||+||
T Consensus 81 ~~~dQ~~iD~~L~-~lDgT~n-----k~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILI-ELDGTPN-----KSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHH-HHHTSTT-----STTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccce-eccCChh-----hhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999 9999998 68899999999999999999999999999986
No 42
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=99.85 E-value=1.1e-20 Score=187.23 Aligned_cols=138 Identities=22% Similarity=0.329 Sum_probs=113.4
Q ss_pred cChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhh-ccCCeeeEEC
Q 043137 224 QENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI-SDYPIVSIED 302 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l-~~~~i~~iEd 302 (445)
+.+.+.++.+|+++ | +++.|++|+| +.||.+++++++. .+ +++++.||||
T Consensus 118 ~~Di~rv~avRe~l---G--pd~~LrvDAN-----------------------~~ws~~~Ai~~~~-~L~e~~~l~~iEq 168 (327)
T PRK02901 118 ADDVARVNAVRDAL---G--PDGRVRVDAN-----------------------GGWSVDEAVAAAR-ALDADGPLEYVEQ 168 (327)
T ss_pred HHHHHHHHHHHHhc---C--CCCEEEEECC-----------------------CCCCHHHHHHHHH-HhhhccCceEEec
Confidence 34455666555554 5 5899999993 5789999999854 56 6799999999
Q ss_pred CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 303 P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
|++ +++++++|+++++ +||++||+. .+.+++.++++.+++|++++|++++|||+++++ +|+++|+++++++
T Consensus 169 P~~--~~~~la~Lr~~~~--vPIA~DEs~-~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s- 239 (327)
T PRK02901 169 PCA--TVEELAELRRRVG--VPIAADESI-RRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSS- 239 (327)
T ss_pred CCC--CHHHHHHHHHhCC--CCEEeCCCC-CCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeC-
Confidence 997 4899999999998 999999985 669999999999999999999999999999988 5789999998875
Q ss_pred CCCChhhHHH--HHHhhhc
Q 043137 383 SGETEDTFIA--DLSVGLA 399 (445)
Q Consensus 383 ~~et~~~~~~--~la~a~~ 399 (445)
+.||+.+.++ |++.++.
T Consensus 240 ~~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 240 ALDTSVGIAAGLALAAALP 258 (327)
T ss_pred CcccHHHHHHHHHHHHhCC
Confidence 5688766544 5555543
No 43
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.77 E-value=4.4e-17 Score=152.05 Aligned_cols=303 Identities=18% Similarity=0.231 Sum_probs=211.1
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhcccc
Q 043137 65 SKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELS 144 (445)
Q Consensus 65 ~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~ 144 (445)
+....+++..+.|.|+|+|....-.-...+. .+-. ...+..+...++|.||.|+.+.+.+.--.+.+...+
T Consensus 87 ~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe-~l~d--------~~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~ 157 (410)
T COG3799 87 EHFIPFLNDHVKPLLVGRDVDAFLDNARVFE-KLID--------GNLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEW 157 (410)
T ss_pred hhhHHHHhhhhhhhhhCccHHhhcchhHHhH-hhcc--------CCcchHHHHhhHHHHHHHHHHHhhccchheeehhhh
Confidence 4556778999999999998765443333333 3311 134567899999999999999999999999999888
Q ss_pred CCCcceeeeeeEEeecCcc-cCC-CCcccceeeeccCChhcHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC
Q 043137 145 GNKNLVLPVPAFNVINGGS-HAG-NKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPN 222 (445)
Q Consensus 145 G~~~~~vp~~~~~~~~gg~-~~~-~~~~~~e~~~~p~~~~~~~~a~~~~~~~~~~~k~~lk~k~G~~~~~~~~~g~~~~~ 222 (445)
+.++..-|+|+|.. +|.. +.. .++-.+.+-++|++- +.. . .++| ++
T Consensus 158 ~lp~~te~vP~fgQ-SGd~R~~~vdkMiLK~vdVLPHgL----------------iNs-v-e~~G-------------~d 205 (410)
T COG3799 158 QLPRVTESVPLFGQ-SGDDRYIAVDKMILKGVDVLPHGL----------------INS-V-EELG-------------FD 205 (410)
T ss_pred CCCCcccccccccc-CcchhhhhHHHHHHhhcCccchhh----------------hhh-H-HHhC-------------Cc
Confidence 88766667777743 1110 000 011112222222211 000 0 1122 22
Q ss_pred ccChHHHHHHHHHHHHHhCCCC-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCC--eee
Q 043137 223 IQENKEGLELLNTAIAKAGYTG-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP--IVS 299 (445)
Q Consensus 223 ~~~~~~~l~~l~~av~~~g~~~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~--i~~ 299 (445)
-.+..+.++++.+.++..|-.+ .-.|.+|+ | + .... --++++....+|++++-++.+ ..+
T Consensus 206 G~~l~Eyv~Wls~R~~~~g~~gYhP~lH~DV-----Y--G-~iGe---------~fg~dp~r~a~yi~~l~~~a~~~pL~ 268 (410)
T COG3799 206 GEKLREYVRWLSDRILSKGTSGYHPTLHIDV-----Y--G-TIGE---------IFGMDPLRCAQYIASLEKEAQGLPLY 268 (410)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCccEEEee-----h--h-hhHH---------HhCCCHHHHHHHHHHHHhhCCCCcee
Confidence 2456788888888777655322 45677888 2 1 0011 124677777888776544433 669
Q ss_pred EECCCCc----CCHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 043137 300 IEDPFDQ----DDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQ 372 (445)
Q Consensus 300 iEdP~~~----~D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~ 372 (445)
||-|++. .+++.++++++.+ +..+.|+.||+ |++.+|+..+.+.++++.||||...+|+|-+.-+.+.+|..
T Consensus 269 IEgP~DaGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDEw-Cnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~ 347 (410)
T COG3799 269 IEGPVDAGSKPAQIRLLAAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNS 347 (410)
T ss_pred eeccccCCCCHHHHHHHHHHHHHHhhcCCcceEeehhh-cccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhcc
Confidence 9999974 5677888888754 33589999998 58899999999999999999999999999999999999999
Q ss_pred cCCcEEecCCCCCChhh--HHHHHHhhhcCCc--cccCCCCCchhHHHHHHHHHHHHH
Q 043137 373 AGWGVMASHRSGETEDT--FIADLSVGLATGQ--IKTGAPCRSERLAKYNQLLRIEEE 426 (445)
Q Consensus 373 ~g~~~~~~~~~~et~~~--~~~~la~a~~~~~--~~~G~~~~~e~~~k~n~ll~i~~~ 426 (445)
+.+...+|+++.||..+ +++|+++|..+-+ .|+|.-.+..--.+.||+-|.-.-
T Consensus 348 ~~~~AYvGGtCnETdvSAr~cvHValAt~a~~mLaKPGMGfDeg~~iV~NEmnRtlA~ 405 (410)
T COG3799 348 HSMEAYVGGTCNETDVSARTCVHVALATRAMRMLAKPGMGFDEGLDIVFNEMNRTLAL 405 (410)
T ss_pred CccceeecccccccchhhhhhhhhhhhhcHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999876 6788888877655 357776677778889988776543
No 44
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.74 E-value=1.4e-16 Score=143.93 Aligned_cols=186 Identities=23% Similarity=0.346 Sum_probs=132.4
Q ss_pred cChHHHHHHHHHHHHHhCCCC-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc-CC-eeeE
Q 043137 224 QENKEGLELLNTAIAKAGYTG-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD-YP-IVSI 300 (445)
Q Consensus 224 ~~~~~~l~~l~~av~~~g~~~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~-~~-i~~i 300 (445)
+...+.+++++..+++.|.++ .-.|.+|+... ....|. .+.+.+.+|+.++.+. .| -..|
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGt--------iG~~f~---------~d~~~~adYl~~l~~aA~P~~L~i 109 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGT--------IGLAFD---------NDPDRMADYLAELEEAAAPFKLRI 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-TTH--------HHHHTT---------T-HHHHHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEccch--------HHHHhC---------CCHHHHHHHHHHHHHhcCCCeeee
Confidence 556788999999999877543 56788899321 111121 2567888888776543 34 4589
Q ss_pred ECCCCcC----CHHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 043137 301 EDPFDQD----DWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA 373 (445)
Q Consensus 301 EdP~~~~----D~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~ 373 (445)
|.|+... +++.+++|++.+ +.++.|++||+ |++++|++.+.+.+++|+||||....|||.++.+.+-+|+.+
T Consensus 110 EgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEW-CNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~ 188 (248)
T PF07476_consen 110 EGPMDAGSREAQIEALAELREELDRRGINVEIVADEW-CNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEH 188 (248)
T ss_dssp E-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT---SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHT
T ss_pred eCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehh-cCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhc
Confidence 9999875 456888888765 33588999998 688999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCChhh--HHHHHHhhhcCCcc--ccCCCCCchhHHHHHHHHHHHHHh
Q 043137 374 GWGVMASHRSGETEDT--FIADLSVGLATGQI--KTGAPCRSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 374 g~~~~~~~~~~et~~~--~~~~la~a~~~~~~--~~G~~~~~e~~~k~n~ll~i~~~l 427 (445)
|+.+.+|++++||..| .++|+|+|+++.++ |+|.-.+..-+..+||+.|+-..+
T Consensus 189 gvgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal~ 246 (248)
T PF07476_consen 189 GVGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLALL 246 (248)
T ss_dssp T-EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHHh
Confidence 9999999999999877 67899999988776 477766777999999999987643
No 45
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.72 E-value=5.6e-17 Score=137.54 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=81.4
Q ss_pred EEEEEEEE--EEecCCC----CceEEEEEEeCCCceEEEeccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhh
Q 043137 4 TITAVKAR--QIFDSRG----NPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77 (445)
Q Consensus 4 kI~~v~~~--~v~~~~g----~~~v~V~v~td~G~~G~g~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p 77 (445)
+|..+... ++..+.+ +..++|+|+|++|++|+|++.... + +.......+.+.+.|
T Consensus 5 ~v~~v~~~l~Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~----------------~---~~~~~~~~~~~~l~~ 65 (117)
T PF02746_consen 5 RVRHVPLPLKPFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSP----------------G---TAETVASALEDYLAP 65 (117)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSS----------------S---SHHHHHHHHHHTHHH
T ss_pred EEEEeccCcCCEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCc----------------c---hhHHHHHHHHHHHHH
Confidence 44444332 4444443 456999999999999999765421 1 134455667888999
Q ss_pred hhcCCCCCCHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhc
Q 043137 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIA 141 (445)
Q Consensus 78 ~LiG~d~~~~e~i~~~l~~~l~~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG 141 (445)
.|+|+++.+++.+++.+.+... . ...|++|||+||||+.||.+|+|||+|||
T Consensus 66 ~l~g~~~~~~~~~~~~~~~~~~----------~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 66 LLIGQDPDDIEDIWQELYRLIK----------G--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHTTSBTTGHHHHHHHHHHHTS----------S--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHhcc----------c--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999999999999998883221 1 36799999999999999999999999997
No 46
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.37 E-value=3.2e-12 Score=97.16 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCcCCH
Q 043137 230 LELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDW 309 (445)
Q Consensus 230 l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~ 309 (445)
++.+|+++ | +++.|++|+| +.||.++++++. +.++++ .|||||++++|+
T Consensus 2 i~avr~~~---g--~~~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~--~~iEeP~~~~d~ 50 (67)
T PF01188_consen 2 IRAVREAV---G--PDIDLMVDAN-----------------------QAWTLEEAIRLA-RALEDY--EWIEEPLPPDDL 50 (67)
T ss_dssp HHHHHHHH---S--TTSEEEEE-T-----------------------TBBSHHHHHHHH-HHHGGG--SEEESSSSTTSH
T ss_pred HHHHHHhh---C--CCCeEEEECC-----------------------CCCCHHHHHHHH-HHcChh--heeecCCCCCCH
Confidence 44455554 6 6899999993 678999999985 567875 999999999999
Q ss_pred HHHHHHHHHhCCCceEEeC
Q 043137 310 EHYAKLTSEVGEKVQIVGD 328 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gd 328 (445)
+++++|+++++ +||++|
T Consensus 51 ~~~~~l~~~~~--~pia~d 67 (67)
T PF01188_consen 51 DGLAELRQQTS--VPIAAD 67 (67)
T ss_dssp HHHHHHHHHCS--SEEEES
T ss_pred HHHHHHHHhCC--CCEEeC
Confidence 99999999998 999886
No 47
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.13 E-value=1.6e-10 Score=96.85 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=58.1
Q ss_pred CcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCC
Q 043137 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401 (445)
Q Consensus 328 de~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~ 401 (445)
||+. .++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ + ++..+.++.++++...+
T Consensus 1 gE~~-~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~-~-~~~i~~aa~~hlaaa~~ 71 (111)
T PF13378_consen 1 GESL-FSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS-M-ESGIGLAASLHLAAALP 71 (111)
T ss_dssp STTS-SSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS-S-SSHHHHHHHHHHHHTST
T ss_pred CCCC-CCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC-C-CCcHHHHHHHHHHHhcC
Confidence 5664 6799999999999999999999999999999999999999999986655 5 88766555555554444
No 48
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=98.88 E-value=2.9e-08 Score=90.62 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhc-cC--CeeeEECCC
Q 043137 228 EGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFIS-DY--PIVSIEDPF 304 (445)
Q Consensus 228 ~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~-~~--~i~~iEdP~ 304 (445)
-.+..+.+++ +|++|++|+| ..||+..+..| ++-+. +| .|.|+|||+
T Consensus 145 mivnllLEai------PDL~LRLDAN-----------------------RaWtp~Ka~~F-AkyV~p~~R~RIaFLEEPC 194 (321)
T COG1441 145 MIVNLLLEAI------PDLHLRLDAN-----------------------RAWTPLKAQQF-AKYVNPDYRSRIAFLEEPC 194 (321)
T ss_pred hHHHHHHHhC------ccceeeeccc-----------------------ccCChHHHHHH-HHhcCHHHHHHHHHHhccc
Confidence 3455566776 7999999993 46777777666 44444 23 499999999
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
.. ...-+.+...++ +.|+-||+. .. .+|.. -....+..|.||++-+|.+....+.+.-|++.|+..++++ +.
T Consensus 195 kt--~aeSr~Fa~eTg--IAIAWDEs~-re-adF~~-e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISS-Si 266 (321)
T COG1441 195 KT--RAESRAFARETG--IAIAWDESL-RE-ADFAF-EAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISS-SI 266 (321)
T ss_pred CC--hHHHHHHHHhcC--eeEeecchh-cc-ccccc-ccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeec-hh
Confidence 74 346677888888 999999985 32 33432 2356788999999999999999999999999999998887 56
Q ss_pred CCh--hhHHHHHHhh
Q 043137 385 ETE--DTFIADLSVG 397 (445)
Q Consensus 385 et~--~~~~~~la~a 397 (445)
|+. .+..+.+|.-
T Consensus 267 ESSLGLtQLARiA~~ 281 (321)
T COG1441 267 ESSLGLTQLARIAAW 281 (321)
T ss_pred hhhcCHHHHHHHHHH
Confidence 764 4456666554
No 49
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=98.26 E-value=1.9e-05 Score=68.20 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=70.2
Q ss_pred eEEEEEEeCCCceEEE-eccCCCccccccceeeccCCCCCCCccHHHHHHHHHHhHhhhhcCCCCCCHHHHHHHHHHHhc
Q 043137 21 TVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLD 99 (445)
Q Consensus 21 ~v~V~v~td~G~~G~g-~~~~~~~~g~~e~~~~~~~~~~y~~~~~~~a~~~i~~~l~p~LiG~d~~~~e~i~~~l~~~l~ 99 (445)
++.|.+.+++|-+.+| |+.. -..|.+.. +|-|. ...-+..|++.++|.|+|+|..++....+.+. .+.
T Consensus 52 sisV~l~L~dG~va~GDCaaV-QYSGagGR------DPLF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d-~~~ 120 (159)
T PF05034_consen 52 SISVMLVLEDGQVAYGDCAAV-QYSGAGGR------DPLFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFD-ELV 120 (159)
T ss_dssp EEEEEEEETTS-EEEEEE----TTTTSTTS-------S------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHH-H-E
T ss_pred EEEEEEEeCCCCEEEeeehhe-eecccCCC------CCccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHH-hcc
Confidence 5889999999998888 4322 11122221 11232 35567789999999999999999999988888 542
Q ss_pred cCCCcccccccccchhhHHHHHHHHHHHHHHhcCCchhhhhccccC
Q 043137 100 GTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG 145 (445)
Q Consensus 100 ~~~~~~~~~~~~~~~~a~sAvdiAlwD~~gk~~g~Pl~~lLG~~~G 145 (445)
+ ...+..+...+|+.||.|+.|++.+.-..+.+..++|
T Consensus 121 ---~-----g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~Ey~ 158 (159)
T PF05034_consen 121 ---D-----GKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAEEYG 158 (159)
T ss_dssp ---T-----TEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHCT
T ss_pred ---c-----CCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 1 2456788999999999999999999988888775444
No 50
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.08 E-value=8.7e-05 Score=74.51 Aligned_cols=95 Identities=13% Similarity=0.222 Sum_probs=73.2
Q ss_pred HHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-----------C
Q 043137 235 TAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-----------D 302 (445)
Q Consensus 235 ~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-----------d 302 (445)
+++|+ +| +++.|+++.+..+.. +.+++.++++++ .+.++++++.||| .
T Consensus 212 ~aIR~~vG--~d~~v~vri~~~~~~-----------------~~g~~~~e~~~i-a~~Le~~gvd~iev~~g~~~~~~~~ 271 (336)
T cd02932 212 DAVRAVWP--EDKPLFVRISATDWV-----------------EGGWDLEDSVEL-AKALKELGVDLIDVSSGGNSPAQKI 271 (336)
T ss_pred HHHHHHcC--CCceEEEEEcccccC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEECCCCCCccccc
Confidence 34443 45 588999998643211 356788899887 5567889999999 4
Q ss_pred CC-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 303 PF-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 303 P~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
|+ +..+.+..++|++.++ +||++.+. +++++++.++++.+.+|+|.+
T Consensus 272 ~~~~~~~~~~~~~ir~~~~--iPVi~~G~-i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 272 PVGPGYQVPFAERIRQEAG--IPVIAVGL-ITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCCccccHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHHHcCCCCeehh
Confidence 77 4556788899999998 99988887 467999999999999999874
No 51
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.80 E-value=9.5e-05 Score=74.30 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred HHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-------CCCCc
Q 043137 235 TAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-------DPFDQ 306 (445)
Q Consensus 235 ~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~~~ 306 (445)
++||+ +| +++.|++++++.++. ..+++.++++++ .+.+++.++.||| +|...
T Consensus 207 ~aIR~avG--~d~~v~vris~~~~~-----------------~~g~~~eea~~i-a~~Le~~Gvd~iev~~g~~~~~~~~ 266 (338)
T cd04733 207 DAIRAAVG--PGFPVGIKLNSADFQ-----------------RGGFTEEDALEV-VEALEEAGVDLVELSGGTYESPAMA 266 (338)
T ss_pred HHHHHHcC--CCCeEEEEEcHHHcC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEecCCCCCCcccc
Confidence 34443 45 589999999653221 135788899887 5668889999999 55532
Q ss_pred ---C---------CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 307 ---D---------DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ---~---------D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+ .++..++|++.++ +||++++. +++++++.++++.+.+|+|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~-i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 267 GAKKESTIAREAYFLEFAEKIRKVTK--TPLMVTGG-FRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred ccccCCccccchhhHHHHHHHHHHcC--CCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 1 1355678999988 99988887 467999999999999999875
No 52
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.36 E-value=0.0051 Score=61.39 Aligned_cols=95 Identities=14% Similarity=0.265 Sum_probs=70.0
Q ss_pred HHHHH-hCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-------CCCC-
Q 043137 235 TAIAK-AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-------DPFD- 305 (445)
Q Consensus 235 ~av~~-~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~~- 305 (445)
+++|+ +| +++.|+++.+..... +.+++.++++++ .+.++++++.||+ +|..
T Consensus 199 ~avr~~~g--~d~~i~vris~~~~~-----------------~~g~~~~e~~~l-a~~l~~~G~d~i~vs~g~~~~~~~~ 258 (327)
T cd02803 199 AAVREAVG--PDFPVGVRLSADDFV-----------------PGGLTLEEAIEI-AKALEEAGVDALHVSGGSYESPPPI 258 (327)
T ss_pred HHHHHHcC--CCceEEEEechhccC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCcccccc
Confidence 34443 44 478899988543211 134678888877 5667889999994 6543
Q ss_pred --------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 306 --------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 306 --------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..+++..+.+++.++ +||++.+. +++++++.++++.+.+|+|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~ir~~~~--iPVi~~Gg-i~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 259 IPPPYVPEGYFLELAEKIKKAVK--IPVIAVGG-IRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred cCCCCCCcchhHHHHHHHHHHCC--CCEEEeCC-CCCHHHHHHHHHCCCCCeeee
Confidence 456678889999987 99988776 467999999999999999875
No 53
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.27 E-value=0.00081 Score=68.00 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=55.4
Q ss_pred CccCHHHHHHHHHHhhccCCee-------eEECCCCcC--------CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIV-------SIEDPFDQD--------DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~-------~iEdP~~~~--------D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
.+++.++++++ .+.++++++. |.|+|.+.. ..+..+++++.++ +||++.+. +++++++.++
T Consensus 219 ~g~~~~e~~~i-~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~--iPVi~~G~-i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVAL-AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD--IPVIASNR-INTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC--CCEEEcCC-CCCHHHHHHH
Confidence 45788888887 5667888743 457777543 2445678999988 99988876 4679999999
Q ss_pred HhcCCCCEEEe
Q 043137 342 IKEKTCNALLL 352 (445)
Q Consensus 342 i~~~a~d~v~i 352 (445)
++.+.+|+|++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999874
No 54
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.33 E-value=0.024 Score=53.40 Aligned_cols=67 Identities=10% Similarity=0.283 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCeeeE-------EC-CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 283 ALKDLYKSFISDYPIVSI-------ED-PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~i-------Ed-P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++.++ .+.+++.++.+| ++ +..+-+++..+++++..+ +||+++.. +++++++.++++.+.+|.|++=
T Consensus 139 ~~~~~-~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~--ipvi~~Gg-i~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 139 ETLEL-AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS--IPVIANGD-IFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC--CeEEEeCC-CCCHHHHHHHHHhcCCCEEEEc
Confidence 56655 456778888888 66 776778999999999887 99988886 5779999999999889999874
No 55
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.25 E-value=2 Score=43.33 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=49.4
Q ss_pred ccCHHHHHHHHHHhhccCC-eeeEEC-------C---------CC-c--CCHHHHHHHHHHhCCCceEEeCcccccCHHH
Q 043137 278 KISGDALKDLYKSFISDYP-IVSIED-------P---------FD-Q--DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKR 337 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~-i~~iEd-------P---------~~-~--~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~ 337 (445)
++|.++.+++ .+++++.+ +.||+= + .. . .+++..+++++.++ +||++.-. ++++++
T Consensus 224 G~~~~e~~~~-~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--ipvi~~G~-i~~~~~ 299 (343)
T cd04734 224 GLSPDEALEI-AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD--LPVFHAGR-IRDPAE 299 (343)
T ss_pred CCCHHHHHHH-HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC--CCEEeeCC-CCCHHH
Confidence 5678888877 56677776 676651 1 11 1 13455577888887 88744433 356999
Q ss_pred HHHHHhcCCCCEEEec
Q 043137 338 VEKAIKEKTCNALLLK 353 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik 353 (445)
+.++++.+.+|.|.+-
T Consensus 300 ~~~~l~~~~~D~V~~g 315 (343)
T cd04734 300 AEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHcCCCCeeeec
Confidence 9999999999998753
No 56
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=91.48 E-value=0.77 Score=45.21 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
++-+.+.+++++++ +|+++|=.+ ++.-+...++. .+|-+.|.+..+|--....+++..|+.+|+++-+|-+.|
T Consensus 61 e~A~A~~~Ik~~~~--vPLVaDiHf--~~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 61 EAAEALKEIKQRLN--VPLVADIHF--DYRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred HHHHHHHHHHHhCC--CCEEEEeec--cHHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 35567788888887 999999653 34444444444 499999999999988889999999999999998888654
No 57
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=90.96 E-value=0.74 Score=45.86 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc-HHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS-VTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG-it~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
+-+.+.+++++++ +|+++|=.+ ++.-....+ ...+|.+.|.+..+|. -....+++..|+++|+++-+|-++|.
T Consensus 68 ~a~al~~I~~~~~--iPlvADIHF--d~~lAl~a~-~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 68 AAAALPEIKKQLP--VPLVADIHF--DYRLALAAA-EAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHhHHHHHHcCC--CCEEEecCC--CHHHHHHHH-HhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 4556777888887 999999653 444444444 3458999999999999 77899999999999999999887653
No 58
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=90.37 E-value=0.72 Score=45.61 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
+-+.+.++++.++ +|+++|=.+ . .. +.-..-...+|-+.|.+..+|.-....++++.|+.+|+++-+|-++|.
T Consensus 60 ~A~al~~I~~~~~--iPlVADIHF-d-~~-lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 60 SAAAFEAIKEGTN--VPLVADIHF-D-YR-LAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HHHhHHHHHhCCC--CCEEEeeCC-C-cH-HHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 3345566666777 999999653 2 22 222233567999999999999999999999999999999999887653
No 59
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.32 E-value=2 Score=39.88 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++++. .+.+-+.++..+|=++...+ ++..++++++.+ ++.|-++- +.+++++++.++.++-=++.|-.+
T Consensus 18 ~~e~a~~~-~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGT--Vl~~~~a~~a~~aGA~FivsP~~~--- 90 (204)
T TIGR01182 18 DVDDALPL-AKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGT--VLNPEQLRQAVDAGAQFIVSPGLT--- 90 (204)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEe--CCCHHHHHHHHHcCCCEEECCCCC---
Confidence 56788776 55667789999999997554 466888988876 47775553 457999999999887655545443
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.++++.|+++|+.++.|.+. -|+ +.-|...++..+|
T Consensus 91 -----~~v~~~~~~~~i~~iPG~~T-ptE----i~~A~~~Ga~~vK 126 (204)
T TIGR01182 91 -----PELAKHAQDHGIPIIPGVAT-PSE----IMLALELGITALK 126 (204)
T ss_pred -----HHHHHHHHHcCCcEECCCCC-HHH----HHHHHHCCCCEEE
Confidence 37888999999998766632 222 2223334566666
No 60
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=87.81 E-value=4.2 Score=40.98 Aligned_cols=94 Identities=11% Similarity=0.189 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC-------------cccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-------------IGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~-------------~GGit~a~~ia~~A~~~g~ 375 (445)
.+..++|++..+ ++||+++.. -+.+.++.+++.+ +|+|.+=+.- ..-+|...++++.|+.+++
T Consensus 137 ~~~ik~ik~~~~-~~~viaGNV--~T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v 212 (352)
T PF00478_consen 137 IDMIKKIKKKFP-DVPVIAGNV--VTYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGV 212 (352)
T ss_dssp HHHHHHHHHHST-TSEEEEEEE---SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCC-CceEEeccc--CCHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccC
Confidence 456788888887 699988864 3589999999887 8998876541 2468999999999999999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.......++| +--|+|+++.++.+|++.
T Consensus 213 ~iIADGGi~~sGD---i~KAla~GAd~VMlG~ll 243 (352)
T PF00478_consen 213 PIIADGGIRTSGD---IVKALAAGADAVMLGSLL 243 (352)
T ss_dssp EEEEESS-SSHHH---HHHHHHTT-SEEEESTTT
T ss_pred ceeecCCcCcccc---eeeeeeecccceeechhh
Confidence 9866553222222 223566678999999865
No 61
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.58 E-value=6.8 Score=39.73 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=46.3
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEE-------CC-CCcCCHHHHHHHHHHhCCCceEEeCccc-----------------c
Q 043137 278 KISGDALKDLYKSFISDYPIVSIE-------DP-FDQDDWEHYAKLTSEVGEKVQIVGDDLL-----------------V 332 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iE-------dP-~~~~D~~~~~~L~~~~~~~vpI~gde~~-----------------~ 332 (445)
+.+.++++++ .+.+++.++.+|+ +| +...+..--+++++.++ +||++--.. .
T Consensus 231 g~~~~e~~~~-~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~--~pv~~~G~i~~~~~~~~~~~~~~~~~~ 307 (361)
T cd04747 231 ADTPDELEAL-LAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG--LPTITVGSVGLDGDFIGAFAGDEGASP 307 (361)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC--CCEEEECCccccccccccccccccccc
Confidence 4678888876 4557777766663 23 22223444456777777 777433221 2
Q ss_pred cCHHHHHHHHhcCCCCEEEe
Q 043137 333 TNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 333 ~~~~~~~~~i~~~a~d~v~i 352 (445)
+++++..++++.+.+|.|.+
T Consensus 308 ~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 308 ASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred CCHHHHHHHHHCCCCCeehh
Confidence 47899999999999999764
No 62
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=87.40 E-value=1.1 Score=44.59 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=52.0
Q ss_pred CHHHHHHHHHH-----hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc--------cc-HHHHHHHHHHHHHc
Q 043137 308 DWEHYAKLTSE-----VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI--------GS-VTESIEAVRMSKQA 373 (445)
Q Consensus 308 D~~~~~~L~~~-----~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~--------GG-it~a~~ia~~A~~~ 373 (445)
+-+.+.+++++ ++ +|+++|=.+ ++.-....++. +|-+.|.+..+ |. -....+++..|+++
T Consensus 57 ~a~al~~I~~~l~~~g~~--iPlVADIHF--d~~lAl~a~~~--v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~ 130 (359)
T PF04551_consen 57 AAEALKEIKKRLRALGSP--IPLVADIHF--DYRLALEAIEA--VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKER 130 (359)
T ss_dssp HHHHHHHHHHHHHCTT-S--S-EEEEEST--TCHHHHHHHHC---SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCC--CCeeeecCC--CHHHHHHHHHH--hCeEEECCCcccccccccccchHHHHHHHHHHHHHC
Confidence 34455666666 66 999999653 45656666665 99999999999 77 78889999999999
Q ss_pred CCcEEecCCCCC
Q 043137 374 GWGVMASHRSGE 385 (445)
Q Consensus 374 g~~~~~~~~~~e 385 (445)
|+++-+|-++|.
T Consensus 131 ~ipIRIGvN~GS 142 (359)
T PF04551_consen 131 GIPIRIGVNSGS 142 (359)
T ss_dssp T-EEEEEEEGGG
T ss_pred CCCEEEeccccc
Confidence 999988876553
No 63
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.94 E-value=8.9 Score=40.70 Aligned_cols=118 Identities=8% Similarity=0.089 Sum_probs=74.8
Q ss_pred HHHHHHHHhhccCCeeeEECCCCcCC----HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc----
Q 043137 283 ALKDLYKSFISDYPIVSIEDPFDQDD----WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV---- 354 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~iEdP~~~~D----~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~---- 354 (445)
+..++...+ -+.++..||=+..+.. ++..+++++..+.+++|.++.. .++++++.+++.++ |++.+-.
T Consensus 242 ~~~~ra~~L-v~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV--~t~e~a~~li~aGA-d~I~vg~g~Gs 317 (502)
T PRK07107 242 DYAERVPAL-VEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV--VDREGFRYLAEAGA-DFVKVGIGGGS 317 (502)
T ss_pred hHHHHHHHH-HHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc--cCHHHHHHHHHcCC-CEEEECCCCCc
Confidence 455554444 4467777776666665 7889999999875688988875 35899999998776 8875522
Q ss_pred ---CC----cc--cHHHHHHHHHHHH----HcC--CcEEecCCCCCChhhHHHHH--HhhhcCCccccCCCC
Q 043137 355 ---NQ----IG--SVTESIEAVRMSK----QAG--WGVMASHRSGETEDTFIADL--SVGLATGQIKTGAPC 409 (445)
Q Consensus 355 ---~~----~G--Git~a~~ia~~A~----~~g--~~~~~~~~~~et~~~~~~~l--a~a~~~~~~~~G~~~ 409 (445)
+| +| -+|...++++.++ ++| ++++..+..-. ..|+ |+|+++..+.+|.+.
T Consensus 318 ~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~-----~gdi~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 318 ICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVY-----DYHMTLALAMGADFIMLGRYF 384 (502)
T ss_pred CcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCc-----hhHHHHHHHcCCCeeeeChhh
Confidence 12 22 3455555555443 347 77655442222 2333 455678888888855
No 64
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=86.25 E-value=9 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=45.8
Q ss_pred ccCHHH-HHHHHHHhhccCCeeeEECCCC------cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEE
Q 043137 278 KISGDA-LKDLYKSFISDYPIVSIEDPFD------QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 278 ~~t~~~-ai~~~~~~l~~~~i~~iEdP~~------~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v 350 (445)
+++.++ ++++ .+++++.++.+|+=-.+ +-...-.+++++.++ +||++.-. . +++...+.++.+.+|+|
T Consensus 244 G~~~~e~~~~~-~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~--~pv~~~G~-~-~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 244 GPNEEADALYL-IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH--GVIIGAGA-Y-TAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCHHHHHHHH-HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC--CCEEEeCC-C-CHHHHHHHHHcCCCCEE
Confidence 467777 6776 55677777777642211 001223367777887 78744433 3 59999999999999998
Q ss_pred Ee
Q 043137 351 LL 352 (445)
Q Consensus 351 ~i 352 (445)
.+
T Consensus 319 ~~ 320 (362)
T PRK10605 319 AF 320 (362)
T ss_pred EE
Confidence 74
No 65
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=86.20 E-value=23 Score=34.22 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=82.7
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CC-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC---CCEE
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PF-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT---CNAL 350 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a---~d~v 350 (445)
..++.++.+++ .+.+++.++..||= |. .++|++..+.+++..+ ++.+.+= ...+..+++..++.+. +|.+
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~-~~~~~~l--~r~~~~~v~~a~~~~~~~~~~~i 90 (268)
T cd07940 15 VSLTPEEKLEI-ARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVL-NAEICGL--ARAVKKDIDAAAEALKPAKVDRI 90 (268)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCC-CCEEEEE--ccCCHhhHHHHHHhCCCCCCCEE
Confidence 35788888877 55688899999996 54 4677888888887654 3555322 1124678888777653 7877
Q ss_pred EeccCC----------c---ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHH---HHhhhcCCccccCCCC
Q 043137 351 LLKVNQ----------I---GSVTESIEAVRMSKQAGWGVMASHRS-GETEDTFIAD---LSVGLATGQIKTGAPC 409 (445)
Q Consensus 351 ~ik~~~----------~---GGit~a~~ia~~A~~~g~~~~~~~~~-~et~~~~~~~---la~a~~~~~~~~G~~~ 409 (445)
.+-.+- + --+..+.++++.|++.|+.+.++... ..+.....+. -+...++..+.+.+-.
T Consensus 91 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 166 (268)
T cd07940 91 HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTV 166 (268)
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 774321 1 12455778889999999998887632 2233444333 3455566666655543
No 66
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=85.83 E-value=4.6 Score=40.53 Aligned_cols=71 Identities=6% Similarity=0.134 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEEC--------CC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSIED--------PF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEd--------P~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
+++.++++++ .+.+++.++.||+= |. +..+++..+++++.++ +||++--. +++++++.++++.+.
T Consensus 223 G~~~~e~~~i-~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~--ipVi~~G~-i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 223 GLTVQDYVQY-AKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN--IATGAVGL-ITSGAQAEEILQNNR 298 (337)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC--CcEEEeCC-CCCHHHHHHHHHcCC
Confidence 5678888876 55677777766631 11 1124555677888877 88744333 356999999999999
Q ss_pred CCEEEe
Q 043137 347 CNALLL 352 (445)
Q Consensus 347 ~d~v~i 352 (445)
+|.|.+
T Consensus 299 ~D~V~~ 304 (337)
T PRK13523 299 ADLIFI 304 (337)
T ss_pred CChHHh
Confidence 998764
No 67
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=85.82 E-value=6.4 Score=40.09 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++.-+++++.++ +||++--. ++++++..++++.+.+|.|.+-
T Consensus 278 ~~~~~~ik~~~~--~pvi~~G~-i~~~~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 278 EPYIKFVKQVTS--KPVVGVGR-FTSPDKMVEVVKSGILDLIGAA 319 (370)
T ss_pred HHHHHHHHHHCC--CCEEEeCC-CCCHHHHHHHHHcCCCCeeeec
Confidence 344467788887 88744332 3579999999999999998754
No 68
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.82 E-value=5.5 Score=40.23 Aligned_cols=72 Identities=8% Similarity=0.135 Sum_probs=45.1
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE-------CCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE-------DPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKT 346 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE-------dP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a 346 (445)
.+.+.++.+++ .+.+++.++.||+ .+. +......++.+++....++||++--. +++++++.++++.+
T Consensus 230 ~g~~~ee~~~i-~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g- 306 (353)
T cd04735 230 PGIRMEDTLAL-VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG- 306 (353)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-
Confidence 35677888876 5567888888875 111 11134455667776622377744332 35689999998874
Q ss_pred CCEEE
Q 043137 347 CNALL 351 (445)
Q Consensus 347 ~d~v~ 351 (445)
+|.|.
T Consensus 307 aD~V~ 311 (353)
T cd04735 307 ADLVA 311 (353)
T ss_pred CChHH
Confidence 77654
No 69
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=84.18 E-value=11 Score=35.12 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC---
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ--- 356 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~--- 356 (445)
+.+++++....+.+-.+..+||=|+..+-++..++|++. + +++.+.-. -++.+....++.+ +++|.|-++|
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~-g--i~v~~T~V--~s~~Qa~~Aa~AG-A~yvsP~vgR~~~ 135 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEE-G--IKTNVTAI--FSAAQALLAAKAG-ATYVSPFVGRIDD 135 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHc-C--CceeeEEe--cCHHHHHHHHHcC-CCEEEEecChHhh
Confidence 345666654444343477899999987656666666655 4 88755543 3588888888877 5889999988
Q ss_pred --cccHHHHHHHHHHHHHcCCc--EEecCCCCCChhhHHHHHHhhhcCCccccC
Q 043137 357 --IGSVTESIEAVRMSKQAGWG--VMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 357 --~GGit~a~~ia~~A~~~g~~--~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.-|+.-..++.++++.+|++ ++.++- -+. .-+.+ +...|+..++++
T Consensus 136 ~g~dg~~~i~~i~~~~~~~~~~tkil~As~--r~~-~ei~~-a~~~Gad~vTv~ 185 (211)
T cd00956 136 LGGDGMELIREIRTIFDNYGFDTKILAASI--RNP-QHVIE-AALAGADAITLP 185 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCceEEeccc--CCH-HHHHH-HHHcCCCEEEeC
Confidence 36788899999999999866 333331 111 11222 334578888774
No 70
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.04 E-value=17 Score=34.87 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEE-CCCC------cCCHHHHHHHHH
Q 043137 245 KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE-DPFD------QDDWEHYAKLTS 317 (445)
Q Consensus 245 ~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iE-dP~~------~~D~~~~~~L~~ 317 (445)
.+.+.+|+....+...+ .|.+...+ .+..+..+.+++ .+.+++.++..|. ..+. .-|++.++++++
T Consensus 124 ~iv~slD~~~g~~~~~~-~~~v~i~g-----w~~~~~~~~~~~-~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~ 196 (254)
T TIGR00735 124 CIVVAIDAKRVYVNSYC-WYEVYIYG-----GRESTGLDAVEW-AKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSE 196 (254)
T ss_pred CEEEEEEeccCCCCCCc-cEEEEEeC-----CcccCCCCHHHH-HHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHH
Confidence 68899998432111001 23333221 011122334444 3445666644321 1222 236788899999
Q ss_pred HhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-CcccHHHHHHHHHHHHHcCCcE
Q 043137 318 EVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 318 ~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-~~GGit~a~~ia~~A~~~g~~~ 377 (445)
.++ +||++.-- +++++++.+++..+.+|.+.+--. ..|.+ ...++.+.++++|+++
T Consensus 197 ~~~--ipvia~GG-i~s~~di~~~~~~g~~dgv~~g~a~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 197 AVK--IPVIASGG-AGKPEHFYEAFTKGKADAALAASVFHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred hCC--CCEEEeCC-CCCHHHHHHHHHcCCcceeeEhHHHhCCCC-CHHHHHHHHHHCCCcc
Confidence 987 88732222 357999999999988999776433 22343 4667777788888874
No 71
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.99 E-value=33 Score=32.93 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=81.2
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++.+++ .+.+++.++..||=-+| ++|++..+++.+... ++.+.+-- ..+.+++....+.+ ++.+.+-
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~-~~~~~~~~--r~~~~~v~~a~~~g-~~~i~i~ 89 (259)
T cd07939 15 VAFSREEKLAI-ARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGL-PARLIVWC--RAVKEDIEAALRCG-VTAVHIS 89 (259)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC-CCEEEEec--cCCHHHHHHHHhCC-cCEEEEE
Confidence 46788888887 56788999999998544 345567777776432 25543332 13578888877654 6777764
Q ss_pred cCCc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHHH---HHHhhhcCCccccCCCC
Q 043137 354 VNQI-------------GSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIA---DLSVGLATGQIKTGAPC 409 (445)
Q Consensus 354 ~~~~-------------GGit~a~~ia~~A~~~g~~~~~~~~~~-et~~~~~~---~la~a~~~~~~~~G~~~ 409 (445)
.+.. -.+..++++++.|++.|+.+.++.... .+...... ..+...++..+.+.+..
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 162 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTV 162 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 4221 225567789999999999987777422 23344444 33445566666655543
No 72
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.85 E-value=29 Score=35.16 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=81.6
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CCC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PFD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.+++.++..||= |.. ++|++..+.+.+... +..|++== ..+.++++.+++.+ ++.+.+-
T Consensus 17 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~-~~~v~~~~--r~~~~di~~a~~~g-~~~i~i~ 91 (363)
T TIGR02090 17 VSLTVEQKVEI-ARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGL-NAEICSLA--RALKKDIDKAIDCG-VDSIHTF 91 (363)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCC-CcEEEEEc--ccCHHHHHHHHHcC-cCEEEEE
Confidence 46788898887 56789999999997 543 466677777776543 35554321 23588999888775 6777762
Q ss_pred cC-------------CcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHHHH---HhhhcCCccccCC
Q 043137 354 VN-------------QIGSVTESIEAVRMSKQAGWGVMASHR-SGETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~-------------~~GGit~a~~ia~~A~~~g~~~~~~~~-~~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
++ +-.-+..+.+.+++|++.|+.+.++-. ...+......++ +...++..+.+.+
T Consensus 92 ~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 22 112356777899999999998876642 233444444444 4445666665444
No 73
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=82.18 E-value=36 Score=30.90 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHhhccCCeeeEEC--CCC-cCCHHHHHHHHHHhCCCceEEeCcccccCHH--HHHHHHhcCCCCEEEecc
Q 043137 280 SGDALKDLYKSFISDYPIVSIED--PFD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~--~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++.+. .+.+.+. +.|+|= |+- ..-++..+.+++..+ ++||.++-- +.++. .++.+. .-.+|++.+..
T Consensus 11 ~~~~~~~~-~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~-~~~i~~~~~-v~~~~~~~~~~~~-~aGad~i~~h~ 85 (202)
T cd04726 11 DLEEALEL-AKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFP-DKIIVADLK-TADAGALEAEMAF-KAGADIVTVLG 85 (202)
T ss_pred CHHHHHHH-HHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEE-eccccHHHHHHHH-hcCCCEEEEEe
Confidence 45677776 4456666 999998 542 233677788887743 388877632 23332 234444 44577777665
Q ss_pred CCcccHHHHHHHHHHHHHcCCcEEec-CCCCCChhhHHHHHHhhhcCCcccc
Q 043137 355 NQIGSVTESIEAVRMSKQAGWGVMAS-HRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 355 ~~~GGit~a~~ia~~A~~~g~~~~~~-~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.- +.....++.+.++.+|+.+.+. +. ..|...... +...++.++++
T Consensus 86 ~~--~~~~~~~~i~~~~~~g~~~~v~~~~-~~t~~e~~~--~~~~~~d~v~~ 132 (202)
T cd04726 86 AA--PLSTIKKAVKAAKKYGKEVQVDLIG-VEDPEKRAK--LLKLGVDIVIL 132 (202)
T ss_pred eC--CHHHHHHHHHHHHHcCCeEEEEEeC-CCCHHHHHH--HHHCCCCEEEE
Confidence 43 2244677888899999998753 32 233333222 44446677665
No 74
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=81.82 E-value=52 Score=31.80 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=85.9
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCcC------------CHHHHHHHHHHhCCCceE--EeCcccccCHHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQD------------DWEHYAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~------------D~~~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i 342 (445)
-.+|.++.+++ .+.+++.++.+||=-++.. |.+.++++.+....+.++ +..-.. ...+++....
T Consensus 15 ~~f~~~~~~~i-a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAI-YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-DDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHH-HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-CCHHHHHHHh
Confidence 45788888876 6678999999999876542 267788887764212554 333221 1346666554
Q ss_pred hcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHHH---HhhhcCCccccCCCC---CchhHH
Q 043137 343 KEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS-GETEDTFIADL---SVGLATGQIKTGAPC---RSERLA 415 (445)
Q Consensus 343 ~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~-~et~~~~~~~l---a~a~~~~~~~~G~~~---~~e~~~ 415 (445)
+ ..++.+.+-.... -+..+++++++|+++|+.+.++-+. ..+.......+ +...++..+.+.+.. ..+++.
T Consensus 93 ~-~gv~~iri~~~~~-~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~ 170 (266)
T cd07944 93 G-SVVDMIRVAFHKH-EFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIK 170 (266)
T ss_pred c-CCcCEEEEecccc-cHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHH
Confidence 4 3478877765443 6899999999999999998766421 22334433433 344566666644433 344443
Q ss_pred HHHH
Q 043137 416 KYNQ 419 (445)
Q Consensus 416 k~n~ 419 (445)
++=+
T Consensus 171 ~lv~ 174 (266)
T cd07944 171 RIIS 174 (266)
T ss_pred HHHH
Confidence 3333
No 75
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=81.70 E-value=12 Score=37.22 Aligned_cols=80 Identities=13% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHHHHHHHhhccCCeeeE-------ECCC-CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc
Q 043137 283 ALKDLYKSFISDYPIVSI-------EDPF-DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~i-------EdP~-~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++ .+.+++.++.+| ++.. ..-|++..++++++++ +||+|.-- +.+++++.++++...+|.|++==
T Consensus 150 ~~~~~-a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~--iPVI~nGg-I~s~~da~~~l~~~gadgVmiGR 225 (321)
T PRK10415 150 NCVEI-AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS--IPVIANGD-ITDPLKARAVLDYTGADALMIGR 225 (321)
T ss_pred hHHHH-HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC--CcEEEeCC-CCCHHHHHHHHhccCCCEEEECh
Confidence 34444 455677776665 2322 1257888899999988 99855443 46799999999988899999864
Q ss_pred CCcccHHHHHHH
Q 043137 355 NQIGSVTESIEA 366 (445)
Q Consensus 355 ~~~GGit~a~~i 366 (445)
.-.+-..=+.++
T Consensus 226 ~~l~nP~if~~~ 237 (321)
T PRK10415 226 AAQGRPWIFREI 237 (321)
T ss_pred HhhcCChHHHHH
Confidence 443333333333
No 76
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=80.83 E-value=26 Score=37.18 Aligned_cols=117 Identities=11% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHHHhhccCCeeeEE-CCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC----
Q 043137 285 KDLYKSFISDYPIVSIE-DPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---- 356 (445)
Q Consensus 285 i~~~~~~l~~~~i~~iE-dP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~---- 356 (445)
++....+ -+.++..|+ |+- ...-++..++|+++++ .++|+++.. .++++++.+++.+ +|+|.+-++-
T Consensus 243 ~~~~~~l-~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~-~~~v~aG~V--~t~~~a~~~~~aG-ad~I~vg~g~Gs~~ 317 (495)
T PTZ00314 243 IERAAAL-IEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP-HVDIIAGNV--VTADQAKNLIDAG-ADGLRIGMGSGSIC 317 (495)
T ss_pred HHHHHHH-HHCCCCEEEEecCCCCchHHHHHHHHHHhhCC-CceEEECCc--CCHHHHHHHHHcC-CCEEEECCcCCccc
Confidence 4443444 446776666 442 2233567888998874 389877653 4689999988765 5777654321
Q ss_pred -------c--ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 357 -------I--GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 357 -------~--GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+ ..++...+++..|+..|++++..+.. -+.-. +--|+++++..+..|...
T Consensus 318 ~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi-~~~~d--i~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 318 ITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI-KNSGD--ICKALALGADCVMLGSLL 376 (495)
T ss_pred ccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC-CCHHH--HHHHHHcCCCEEEECchh
Confidence 1 23566778888999999998664422 22111 222445578888887743
No 77
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=80.64 E-value=16 Score=36.63 Aligned_cols=69 Identities=7% Similarity=0.069 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHHhhccCCeeeEEC--CC-----CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 279 ISGDALKDLYKSFISDYPIVSIED--PF-----DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEd--P~-----~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.+.++++++ .+++++.++.+|+= .. ....++..+++++.++ +||++--. ++ ++++.++++.+.+|.|.
T Consensus 238 ~~~ee~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~--ipvi~~G~-i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 238 DPEATFSYL-AKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK--GPLIAAGG-YD-AESAEAALADGKADLVA 312 (338)
T ss_pred CCHHHHHHH-HHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC--CCEEEECC-CC-HHHHHHHHHcCCCCEEE
Confidence 567788876 56677776666542 11 2235566778888887 88744443 34 89999999999999987
Q ss_pred e
Q 043137 352 L 352 (445)
Q Consensus 352 i 352 (445)
+
T Consensus 313 ~ 313 (338)
T cd02933 313 F 313 (338)
T ss_pred e
Confidence 5
No 78
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.14 E-value=16 Score=34.21 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCC--CceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGE--KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~--~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+.+++++. .+.+-+.++..+|=++...+ ++..++|+++.+. ++.|-++- +.+++++++.++.++-=++.|-.+
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT--V~~~~~~~~a~~aGA~FivsP~~~- 98 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT--VLDAVTARLAILAGAQFIVSPSFN- 98 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee--CCCHHHHHHHHHcCCCEEECCCCC-
Confidence 45677776 55677789999999997544 5678899888742 26664443 567999999999887655544333
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 357 ~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
.++++.|+++|+.++.|.. ..++ +.-|...++.++|+
T Consensus 99 -------~~v~~~~~~~~i~~iPG~~-T~~E----~~~A~~~Gad~vkl 135 (213)
T PRK06552 99 -------RETAKICNLYQIPYLPGCM-TVTE----IVTALEAGSEIVKL 135 (213)
T ss_pred -------HHHHHHHHHcCCCEECCcC-CHHH----HHHHHHcCCCEEEE
Confidence 4577789999999866553 2222 22233456777776
No 79
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=79.77 E-value=12 Score=38.18 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=48.3
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC-------CC---Cc-----CC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED-------PF---DQ-----DD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd-------P~---~~-----~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~ 340 (445)
.+++.++++++ .+++++.++.||+= +. ++ .. ..-.+++++.++ +||++--. +++++++.+
T Consensus 247 ~g~~~e~~~~~-~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pvi~~G~-i~~~~~~~~ 322 (382)
T cd02931 247 KGRDLEEGLKA-AKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD--VPVIMAGR-MEDPELASE 322 (382)
T ss_pred CCCCHHHHHHH-HHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCC--CCEEEeCC-CCCHHHHHH
Confidence 46788998877 55677777666631 11 10 11 223466777777 88744443 467999999
Q ss_pred HHhcCCCCEEEe
Q 043137 341 AIKEKTCNALLL 352 (445)
Q Consensus 341 ~i~~~a~d~v~i 352 (445)
+++.+.+|.|.+
T Consensus 323 ~l~~g~~D~V~~ 334 (382)
T cd02931 323 AINEGIADMISL 334 (382)
T ss_pred HHHcCCCCeeee
Confidence 999999999875
No 80
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.73 E-value=20 Score=36.43 Aligned_cols=72 Identities=8% Similarity=0.160 Sum_probs=46.0
Q ss_pred CccCHHHHHHHHHHhhccCC-eeeEE------CCCCcCCHH------H-HHHHHHHhCCCceEEeCcccccCHHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYP-IVSIE------DPFDQDDWE------H-YAKLTSEVGEKVQIVGDDLLVTNPKRVEKAI 342 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~-i~~iE------dP~~~~D~~------~-~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i 342 (445)
.+++.++.+++ .+.|++.+ +.++. +|.+.-... . -..++.... +|+++--. .++++....++
T Consensus 232 ~g~~~~e~~~l-a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~--~pvi~~G~-i~~~~~Ae~~l 307 (363)
T COG1902 232 GGLTIEEAVEL-AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR--IPVIAVGG-INDPEQAEEIL 307 (363)
T ss_pred CCCCHHHHHHH-HHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC--CCEEEeCC-CCCHHHHHHHH
Confidence 46788898876 56788777 45542 221111111 1 233556666 88855554 46799999999
Q ss_pred hcCCCCEEEe
Q 043137 343 KEKTCNALLL 352 (445)
Q Consensus 343 ~~~a~d~v~i 352 (445)
+.+.+|.|-+
T Consensus 308 ~~g~aDlVa~ 317 (363)
T COG1902 308 ASGRADLVAM 317 (363)
T ss_pred HcCCCCEEEe
Confidence 9999998864
No 81
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.57 E-value=14 Score=41.45 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=48.4
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--------CCC----cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhc
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--------PFD----QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKE 344 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--------P~~----~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~ 344 (445)
.+++.++++++ .+.+++.++.||+= +.+ .-...-.+++++.++ +||++--. +++++++.++++.
T Consensus 633 ~g~~~~~~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pv~~~G~-i~~~~~a~~~l~~ 708 (765)
T PRK08255 633 GGNTPDDAVEI-ARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAG--IATIAVGA-ISEADHVNSIIAA 708 (765)
T ss_pred CCCCHHHHHHH-HHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcC--CEEEEeCC-CCCHHHHHHHHHc
Confidence 35788888876 56678777766641 110 011233366777777 88744433 3679999999999
Q ss_pred CCCCEEEe
Q 043137 345 KTCNALLL 352 (445)
Q Consensus 345 ~a~d~v~i 352 (445)
+.+|.|.+
T Consensus 709 g~~D~v~~ 716 (765)
T PRK08255 709 GRADLCAL 716 (765)
T ss_pred CCcceeeE
Confidence 99999886
No 82
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.07 E-value=55 Score=29.89 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHhhccCCeeeEECC--CC-cCCHHHHHHHHHHhCCCceEEeCcccccCHH--HHHHHHhcCCCCEEEecc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDP--FD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPK--RVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP--~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~--~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++++. .+.+ +.++.+||-+ +. +.-.+..+.|++..+ +..+..|--. .++. +++.+.+.+ +|++.+..
T Consensus 10 ~~~~a~~~-~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d~k~-~d~~~~~~~~~~~~G-ad~i~vh~ 84 (206)
T TIGR03128 10 DIEEALEL-AEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLADLKT-MDAGEYEAEQAFAAG-ADIVTVLG 84 (206)
T ss_pred CHHHHHHH-HHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEee-ccchHHHHHHHHHcC-CCEEEEec
Confidence 45678776 4556 5679999995 42 344677888888753 2566665321 2343 455655544 78887776
Q ss_pred CCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccC
Q 043137 355 NQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 355 ~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.. +.....++.+.|+++|+++++.-....+.... +..+...++.++++.
T Consensus 85 ~~--~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~-~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 85 VA--DDATIKGAVKAAKKHGKEVQVDLINVKDKVKR-AKELKELGADYIGVH 133 (206)
T ss_pred cC--CHHHHHHHHHHHHHcCCEEEEEecCCCChHHH-HHHHHHcCCCEEEEc
Confidence 53 22345778888999999998763122332111 222333467777764
No 83
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.85 E-value=25 Score=34.89 Aligned_cols=72 Identities=7% Similarity=0.299 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccCCeeeE-------ECCCC--cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 283 ALKDLYKSFISDYPIVSI-------EDPFD--QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~i-------EdP~~--~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+.+++ .+.+++.++.+| +|... +-|++..+++++.++ +||+|.-- +.+++++.++++...+|.|++=
T Consensus 149 ~~~~~-a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~--iPVi~nGd-I~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 149 RKFEI-ADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT--IPVIANGE-IWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHH-HHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC--CcEEEeCC-cCCHHHHHHHHhccCCCEEEEc
Confidence 34444 556777765544 23221 127888999999987 99866554 4679999999999999999975
Q ss_pred cCCcc
Q 043137 354 VNQIG 358 (445)
Q Consensus 354 ~~~~G 358 (445)
=.-.+
T Consensus 225 Rg~l~ 229 (312)
T PRK10550 225 RGALN 229 (312)
T ss_pred HHhHh
Confidence 44333
No 84
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=76.53 E-value=38 Score=31.52 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.++++.. .+.+-+-++..||=|+...+ .+..+.|++..+ ++-|-++- +.++++++++++.++-=+|.|.++
T Consensus 23 ~~e~a~~~-a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGT--VL~~~q~~~a~~aGa~fiVsP~~~--- 95 (211)
T COG0800 23 DVEEALPL-AKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGT--VLNPEQARQAIAAGAQFIVSPGLN--- 95 (211)
T ss_pred CHHHHHHH-HHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEcccc--ccCHHHHHHHHHcCCCEEECCCCC---
Confidence 56788887 44556689999999997654 477888998887 57775554 347999999999988777766665
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCC
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.++++.|..+|++++.|..
T Consensus 96 -----~ev~~~a~~~~ip~~PG~~ 114 (211)
T COG0800 96 -----PEVAKAANRYGIPYIPGVA 114 (211)
T ss_pred -----HHHHHHHHhCCCcccCCCC
Confidence 3678889999999876663
No 85
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=76.43 E-value=11 Score=37.40 Aligned_cols=69 Identities=12% Similarity=0.418 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCCeeeE-------ECCCC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 281 GDALKDLYKSFISDYPIVSI-------EDPFD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 281 ~~~ai~~~~~~l~~~~i~~i-------EdP~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.++.+++ .+.+++.++.+| +|-.. +-|++..+++++.++ +||++.-- +.+++++.+.++.-.+|.|++
T Consensus 137 ~~~~~~~-~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~--ipvi~NGd-I~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIEF-ARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP--IPVIANGD-IFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHHH-HHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T--SEEEEESS---SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHHH-HHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc--ceeEEcCc-cCCHHHHHHHHHhcCCcEEEE
Confidence 3566776 556788887776 33332 568999999999998 99966654 467999999998878899885
Q ss_pred c
Q 043137 353 K 353 (445)
Q Consensus 353 k 353 (445)
=
T Consensus 213 g 213 (309)
T PF01207_consen 213 G 213 (309)
T ss_dssp S
T ss_pred c
Confidence 3
No 86
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=76.23 E-value=13 Score=39.67 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=53.2
Q ss_pred HHHHHHHHH-----hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc----------------------HHH
Q 043137 310 EHYAKLTSE-----VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS----------------------VTE 362 (445)
Q Consensus 310 ~~~~~L~~~-----~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG----------------------it~ 362 (445)
+.+..++++ ++ +|+++|=.+ ++.-....++. +|-|.|.++..|. -..
T Consensus 73 ~al~~I~~~L~~~g~~--iPLVADIHF--~~~~A~~a~~~--vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~ 146 (606)
T PRK00694 73 QACEHIKERLIQQGIS--IPLVADIHF--FPQAAMHVADF--VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEK 146 (606)
T ss_pred HhHHHHHHHHhccCCC--CCEEeecCC--ChHHHHHHHHh--cCceEECCcccCCccccccccccchhhhhhhhhhHHHH
Confidence 344444544 44 999999654 46555555554 9999999999998 568
Q ss_pred HHHHHHHHHHcCCcEEecCCCCC
Q 043137 363 SIEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 363 a~~ia~~A~~~g~~~~~~~~~~e 385 (445)
...++..|+++|+.+-+|-+.|.
T Consensus 147 ~~~vV~~ake~~~~IRIGvN~GS 169 (606)
T PRK00694 147 FSPLVEKCKRLGKAMRIGVNHGS 169 (606)
T ss_pred HHHHHHHHHHCCCCEEEecCCcC
Confidence 89999999999999999886553
No 87
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.03 E-value=18 Score=33.48 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcC-CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQD-DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~-D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++++. .+.+-+.++..||=++... -++..++|+++.+ ++-|-++- +.+.+++++.++.++-=++.|-+.
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~-~~~vGAGT--Vl~~e~a~~ai~aGA~FivSP~~~--- 86 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEITLRTPAALDAIRAVAAEVE-EAIVGAGT--ILNAKQFEDAAKAGSRFIVSPGTT--- 86 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEeeEe--CcCHHHHHHHHHcCCCEEECCCCC---
Confidence 56788776 4556678999999999754 4567788888876 46664442 467999999999887666655544
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCC
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.++++.|+++|+.++.|.+
T Consensus 87 -----~~vi~~a~~~~i~~iPG~~ 105 (201)
T PRK06015 87 -----QELLAAANDSDVPLLPGAA 105 (201)
T ss_pred -----HHHHHHHHHcCCCEeCCCC
Confidence 4577889999999866663
No 88
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.28 E-value=18 Score=34.04 Aligned_cols=92 Identities=9% Similarity=-0.062 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCc-CCHHHHHHHHHHhCC---CceEEeCcccccCHHHHHHHHhcCCCCEEEeccC
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQ-DDWEHYAKLTSEVGE---KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~-~D~~~~~~L~~~~~~---~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+.+++++. .+.+-+.++..||=++.. +-.+.+++|++.... ++.|-++ . +.++++++..++.++-=+|.|-..
T Consensus 25 ~~~~a~~~-~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-T-Vl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 25 DVEVAKKV-IKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-S-IVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-e-CcCHHHHHHHHHcCCCEEECCCCC
Confidence 56788876 556667899999999964 456778888755432 2555333 2 567999999999887666555444
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 356 QIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 356 ~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.++++.|+++|+.++.|.+
T Consensus 102 --------~~v~~~~~~~~i~~iPG~~ 120 (222)
T PRK07114 102 --------PDIAKVCNRRKVPYSPGCG 120 (222)
T ss_pred --------HHHHHHHHHcCCCEeCCCC
Confidence 3578889999999866663
No 89
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=74.14 E-value=29 Score=34.04 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHH
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEA 366 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i 366 (445)
.++...++++.++ +||++.-- +++++++.+++..+ +|.|++=-.-.-+..-..++
T Consensus 222 ~l~~v~~i~~~~~--ipvi~~GG-I~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i 276 (301)
T PRK07259 222 ALRMVYQVYQAVD--IPIIGMGG-ISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKI 276 (301)
T ss_pred cHHHHHHHHHhCC--CCEEEECC-CCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHH
Confidence 4667778888877 99866554 56799999999887 69988764433344444443
No 90
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=73.96 E-value=15 Score=36.97 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..-+.+++.++ +||++--. .++++...++++.+.+|+|-+
T Consensus 281 ~~a~~ik~~~~--~pvi~~G~-i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 281 DLAEAIKKAVK--IPVIGVGG-IRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHS--SEEEEESS-TTHHHHHHHHHHTTSTSEEEE
T ss_pred hhhhhhhhhcC--ceEEEEee-ecchhhhHHHHhcCCceEeec
Confidence 44567777787 88855544 356888999999999999874
No 91
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=73.59 E-value=91 Score=30.18 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=76.5
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CC-CcCCHHHHHHHHHHhCCCceEEeCc----cc--ccCHHHHHHHHhcCCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PF-DQDDWEHYAKLTSEVGEKVQIVGDD----LL--VTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~vpI~gde----~~--~~~~~~~~~~i~~~a~ 347 (445)
..++.++.+++ .+.+.+.++..||= |. .+.|.+.++++++....+..+++-- .. ..+...++.+++. .+
T Consensus 15 ~~~s~e~k~~i-~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~-g~ 92 (273)
T cd07941 15 ISFSVEDKLRI-ARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEA-GT 92 (273)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhC-CC
Confidence 45788888877 55688899999997 44 6677777888876531124443211 10 1112345555543 55
Q ss_pred CEEEeccCCc-------------ccHHHHHHHHHHHHHcCCcEEecCC---C-CCChhhHHHHHH---hhhcCCccccCC
Q 043137 348 NALLLKVNQI-------------GSVTESIEAVRMSKQAGWGVMASHR---S-GETEDTFIADLS---VGLATGQIKTGA 407 (445)
Q Consensus 348 d~v~ik~~~~-------------GGit~a~~ia~~A~~~g~~~~~~~~---~-~et~~~~~~~la---~a~~~~~~~~G~ 407 (445)
+.+.+-++-. --+..+++++++|++.|+.+.+..+ . ..+.....++++ ...++..+.+.+
T Consensus 93 ~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~D 172 (273)
T cd07941 93 PVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCD 172 (273)
T ss_pred CEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 6676643321 2345678899999999999877532 1 123344555553 455666666544
No 92
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.22 E-value=89 Score=29.95 Aligned_cols=128 Identities=9% Similarity=0.043 Sum_probs=80.6
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--------------CCCcCCHHHHHHHHHHhCCCceE--EeCcccccCHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--------------PFDQDDWEHYAKLTSEVGEKVQI--VGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--------------P~~~~D~~~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~ 340 (445)
..++.++.+++ .+.+.+.++..||= |...++++..+++++..+ ++.+ ...-. ..+..++.+
T Consensus 17 ~~~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~ 93 (263)
T cd07943 17 HQFTLEQVRAI-ARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK-QAKLGVLLLPG-IGTVDDLKM 93 (263)
T ss_pred eecCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc-CCEEEEEecCC-ccCHHHHHH
Confidence 35678888877 55678899999987 445567788888876643 2444 22221 234778877
Q ss_pred HHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHHH---HHhhhcCCccccCCCC
Q 043137 341 AIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR-SGETEDTFIAD---LSVGLATGQIKTGAPC 409 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~-~~et~~~~~~~---la~a~~~~~~~~G~~~ 409 (445)
.++. .+|.+.+-.... =+..++++++.|++.|+.+.+.-+ ..........+ .+...++..+.+.+-.
T Consensus 94 a~~~-g~~~iri~~~~s-~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~ 164 (263)
T cd07943 94 AADL-GVDVVRVATHCT-EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSA 164 (263)
T ss_pred HHHc-CCCEEEEEechh-hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 7765 578888754332 245788899999999988755442 22233343333 3444566666655433
No 93
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=73.04 E-value=25 Score=32.71 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHhhccCC--eeeEEC---CCCcCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 279 ISGDALKDLYKSFISDYP--IVSIED---PFDQDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~--i~~iEd---P~~~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.+++++..+ +...+.++ +.|+|+ ...+-+.+-.+++++.++ +|+ +|.- ++++++++++++.+ +|.+.+
T Consensus 131 ~~~e~~~~~-a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~--~Pv~vGGG--Irs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAY-CLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASG--IPLIVGGG--IRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC--CCEEEeCC--CCCHHHHHHHHHcC-CCEEEe
Confidence 466776655 55666554 778898 445567889999999987 887 6665 46799999988777 677654
No 94
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.92 E-value=17 Score=35.33 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
++..+++++.++.++||++.-- +++.+++.+++..+ +|.|++-
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GG-I~~~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGG-IDSGEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECC-CCCHHHHHHHHHcC-ccHheEc
Confidence 4455777777732388855443 46789999998877 7777753
No 95
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=72.55 E-value=87 Score=29.66 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=79.4
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCC---------CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPF---------DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~---------~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
.++.++.++++ +.+.+.++.+||=-. ..++++-.+++++..+ ++++.+-- .+..++++++.+.+ ++
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~-~~~~~~l~--~~~~~~i~~a~~~g-~~ 89 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP-NVKLQALV--RNREKGIERALEAG-VD 89 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC-CcEEEEEc--cCchhhHHHHHhCC-cC
Confidence 46788888874 456777877777433 2466677788887763 36664321 12266777777665 67
Q ss_pred EEEeccCCc-------------ccHHHHHHHHHHHHHcCCcEEecCC-CCC--Chh---hHHHHHHhhhcCCccccCC
Q 043137 349 ALLLKVNQI-------------GSVTESIEAVRMSKQAGWGVMASHR-SGE--TED---TFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 349 ~v~ik~~~~-------------GGit~a~~ia~~A~~~g~~~~~~~~-~~e--t~~---~~~~~la~a~~~~~~~~G~ 407 (445)
.+++-..-. +-+..+++.++.|++.|+.+.+.-. ... ... ...+..+...++..+.+-+
T Consensus 90 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 90 EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech
Confidence 777665433 2478888999999999999866552 111 222 2345556666776666433
No 96
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=72.03 E-value=39 Score=31.99 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHhhccCCeee--EECCCCc---CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 284 LKDLYKSFISDYPIVS--IEDPFDQ---DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 284 ai~~~~~~l~~~~i~~--iEdP~~~---~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.+++ .+.+++.+..+ +.+=.+. -|++..+++++.++ ++||+|.-. +.+.+|+.++++. .+|.|++
T Consensus 150 ~~~~-a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~-~ipIIgNGg-I~s~eda~e~l~~-GAd~Vmv 219 (231)
T TIGR00736 150 ELID-ALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFN-DKIIIGNNS-IDDIESAKEMLKA-GADFVSV 219 (231)
T ss_pred HHHH-HHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC-CCcEEEECC-cCCHHHHHHHHHh-CCCeEEE
Confidence 3343 45566766443 4433322 26888888888873 299977765 5779999999984 5888876
No 97
>PLN02321 2-isopropylmalate synthase
Probab=71.67 E-value=85 Score=34.41 Aligned_cols=128 Identities=18% Similarity=0.234 Sum_probs=77.4
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE--CC-CCcCCHHHHHHHHHHhCCCc------e-EEeCcccccCHHHHHHHHhcC-
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE--DP-FDQDDWEHYAKLTSEVGEKV------Q-IVGDDLLVTNPKRVEKAIKEK- 345 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE--dP-~~~~D~~~~~~L~~~~~~~v------p-I~gde~~~~~~~~~~~~i~~~- 345 (445)
..++.+|-+++ .+.|++.++..|| =| ..++|++.++++.+.....+ | |++= ...+..++.+.++..
T Consensus 103 ~~~s~eeKl~I-a~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~--~ra~~~dId~A~~al~ 179 (632)
T PLN02321 103 ATLTSKEKLDI-ARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGL--SRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeee--hhccHHhHHHHHHHhc
Confidence 45788998887 5678999999999 45 45788999999987643212 3 2222 123578888777642
Q ss_pred CCC--EEEecc-------------CCcccHHHHHHHHHHHHHcCC-cEEecCC-CCCChhhHHH---HHHhhhcCCcccc
Q 043137 346 TCN--ALLLKV-------------NQIGSVTESIEAVRMSKQAGW-GVMASHR-SGETEDTFIA---DLSVGLATGQIKT 405 (445)
Q Consensus 346 a~d--~v~ik~-------------~~~GGit~a~~ia~~A~~~g~-~~~~~~~-~~et~~~~~~---~la~a~~~~~~~~ 405 (445)
.++ .+.+-+ ++---+..+.+++++|+++|. .+.+++. .+.+...+.. ..+...++..+.+
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI 259 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 111 222221 222334446678889999988 4767662 2234444443 3344456777765
Q ss_pred CC
Q 043137 406 GA 407 (445)
Q Consensus 406 G~ 407 (445)
.+
T Consensus 260 ~D 261 (632)
T PLN02321 260 PD 261 (632)
T ss_pred cc
Confidence 54
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=71.44 E-value=20 Score=36.59 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-----------Ccc--cHHHHHHHHHHHHH
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-----------QIG--SVTESIEAVRMSKQ 372 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-----------~~G--Git~a~~ia~~A~~ 372 (445)
.-.++-.++++++.++ .+|+|+.. +| .+..+.+|..+ +|.+.+-.. -|| =-|...+++.+|+.
T Consensus 277 ~~qiemik~iK~~yP~-l~ViaGNV-VT-~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 277 IYQLEMIKYIKETYPD-LQIIAGNV-VT-KEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred hhHHHHHHHHHhhCCC-ceeeccce-ee-HHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 3466788888888874 88888875 55 78898998765 577765442 232 24889999999999
Q ss_pred cCCcEEecCCCCCChhhHHHHHHhhhcCCccccCCC
Q 043137 373 AGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 373 ~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+|++|+..+ +-.+...++ =|+++++.++..|++
T Consensus 353 ~gvpviADG--Giq~~Ghi~-KAl~lGAstVMmG~l 385 (503)
T KOG2550|consen 353 FGVPCIADG--GIQNVGHVV-KALGLGASTVMMGGL 385 (503)
T ss_pred cCCceeecC--CcCccchhH-hhhhcCchhheecce
Confidence 999986654 222223223 355667778887773
No 99
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=70.57 E-value=72 Score=30.38 Aligned_cols=116 Identities=12% Similarity=0.237 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCe---ee----EECC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPI---VS----IEDP 303 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i---~~----iEdP 303 (445)
+.+++++++-| +.+.+.+|+.-...--+ .|.-. ...++.++++ .++++++ .+ .|--
T Consensus 112 ~~v~~~~~~~g--~rivv~lD~r~g~vav~--GW~e~---------s~~~~~~l~~----~~~~~g~~~ii~TdI~~DGt 174 (241)
T COG0106 112 DLVKELCEEYG--DRIVVALDARDGKVAVS--GWQED---------SGVELEELAK----RLEEVGLAHILYTDISRDGT 174 (241)
T ss_pred HHHHHHHHHcC--CcEEEEEEccCCccccc--ccccc---------ccCCHHHHHH----HHHhcCCCeEEEEecccccc
Confidence 44556676665 58999999953211000 23221 2344455443 3444442 22 2344
Q ss_pred CCcCCHHHHHHHHHHhCCCceE--EeCcccccCHHHHHHHHhc-CCCCEEEeccCCccc--HHHHHHHHH
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKE-KTCNALLLKVNQIGS--VTESIEAVR 368 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~-~a~d~v~ik~~~~GG--it~a~~ia~ 368 (445)
+.--|++.+++|++.+. +|+ +|+ +++.+|++.+-.. +...++.=+.--.|. +.++++.++
T Consensus 175 l~G~n~~l~~~l~~~~~--ipviaSGG---v~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 175 LSGPNVDLVKELAEAVD--IPVIASGG---VSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred cCCCCHHHHHHHHHHhC--cCEEEecC---cCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 44558999999999998 887 444 4579999999877 566666655433333 466666553
No 100
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=69.51 E-value=70 Score=32.00 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhccCCeeeEE--------C--------CCCcCCHHHHHHHHHHh-CCCceEEeCcccccCHHHHHHHHh
Q 043137 281 GDALKDLYKSFISDYPIVSIE--------D--------PFDQDDWEHYAKLTSEV-GEKVQIVGDDLLVTNPKRVEKAIK 343 (445)
Q Consensus 281 ~~~ai~~~~~~l~~~~i~~iE--------d--------P~~~~D~~~~~~L~~~~-~~~vpI~gde~~~~~~~~~~~~i~ 343 (445)
..+++++ .+.+++.++.+|. + .+++-+++...++++.+ + +||++.-- +++++++.++++
T Consensus 150 ~~~~~~~-~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~--iPVI~nGg-I~s~eda~~~l~ 225 (333)
T PRK11815 150 YEFLCDF-VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPH--LTIEINGG-IKTLEEAKEHLQ 225 (333)
T ss_pred HHHHHHH-HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCC--CeEEEECC-cCCHHHHHHHHh
Confidence 3456665 4456666665553 1 12335788888998886 5 89855433 467999999987
Q ss_pred cCCCCEEEeccCCcccHHHHHHH
Q 043137 344 EKTCNALLLKVNQIGSVTESIEA 366 (445)
Q Consensus 344 ~~a~d~v~ik~~~~GGit~a~~i 366 (445)
. +|.|++==.-.+...-+.++
T Consensus 226 ~--aDgVmIGRa~l~nP~~~~~~ 246 (333)
T PRK11815 226 H--VDGVMIGRAAYHNPYLLAEV 246 (333)
T ss_pred c--CCEEEEcHHHHhCCHHHHHH
Confidence 3 89998754444444444444
No 101
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=69.23 E-value=59 Score=30.92 Aligned_cols=120 Identities=13% Similarity=0.237 Sum_probs=81.5
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceEEeCccc-------ccCH-HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLL-------VTNP-KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQ 372 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~-------~~~~-~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~ 372 (445)
.|-+-..+-....+++.+++.++.|.+|=.. ..+. +.++..++.+.+|.+.+.=.+.|+-...-++...++.
T Consensus 124 dqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~ 203 (263)
T COG0434 124 DQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEA 203 (263)
T ss_pred ccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhc
Confidence 3444334445566677776666777776421 0122 3345568899999999999999999999999988888
Q ss_pred cCCcEEecCCCCCChhhHHHHHHhhh-cCCccccCC----CCCchhHHHHHHH
Q 043137 373 AGWGVMASHRSGETEDTFIADLSVGL-ATGQIKTGA----PCRSERLAKYNQL 420 (445)
Q Consensus 373 ~g~~~~~~~~~~et~~~~~~~la~a~-~~~~~~~G~----~~~~e~~~k~n~l 420 (445)
..+++.+|+....-+...+.++|=|+ -...+|-|+ |-+.+|..++-++
T Consensus 204 ~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~ 256 (263)
T COG0434 204 VDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLERVRRFVEA 256 (263)
T ss_pred cCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccCHHHHHHHHHH
Confidence 89999888744333455566665554 246788888 7788887555443
No 102
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.61 E-value=26 Score=32.71 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcC-CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQD-DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~-D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++++. .+.+.+.++..||=++... -++..++|+++.+ ++-|-++- +.+.++++..++.++-=++.+-.+
T Consensus 25 ~~~~a~~i-~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p-~~~IGAGT--Vl~~~~a~~a~~aGA~FivsP~~~--- 97 (212)
T PRK05718 25 KLEDAVPL-AKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP-EALIGAGT--VLNPEQLAQAIEAGAQFIVSPGLT--- 97 (212)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC-CCEEEEee--ccCHHHHHHHHHcCCCEEECCCCC---
Confidence 56788877 5667788999999998654 4466788888887 46665563 467899999998887555544333
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+ ++++.|+++++.++.|.+.. |+ +.-|...++..+|+
T Consensus 98 ---~--~vi~~a~~~~i~~iPG~~Tp-tE----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 98 ---P--PLLKAAQEGPIPLIPGVSTP-SE----LMLGMELGLRTFKF 134 (212)
T ss_pred ---H--HHHHHHHHcCCCEeCCCCCH-HH----HHHHHHCCCCEEEE
Confidence 2 56777888999975565321 11 22244456666664
No 103
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=68.46 E-value=47 Score=32.00 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHH
Q 043137 282 DALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361 (445)
Q Consensus 282 ~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 361 (445)
.+-++.+.+.++++++.|+=+|+..++.+-..++ .+ -..|.+.+ +++.. +.+.+. +.--.|++|-+..+++.
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~---~d-~lkI~s~~--~~n~~-LL~~~a-~~gkPVilk~G~~~t~~ 146 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY---AD-ILQIGARN--MQNFE-LLKEVG-KQGKPVLLKRGMGNTIE 146 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh---CC-EEEECccc--ccCHH-HHHHHh-cCCCcEEEeCCCCCCHH
Confidence 4556667888889999999999988877766655 22 13444444 34544 444332 34558889999888999
Q ss_pred HHHHHHHHHHHcCC-cEEecCC
Q 043137 362 ESIEAVRMSKQAGW-GVMASHR 382 (445)
Q Consensus 362 ~a~~ia~~A~~~g~-~~~~~~~ 382 (445)
++..++...++.|. ++++-|+
T Consensus 147 e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 147 EWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred HHHHHHHHHHHcCCCcEEEEEC
Confidence 99999999888776 5666553
No 104
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=68.27 E-value=50 Score=31.25 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHHhhccCCeeeE--ECCC--CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc
Q 043137 283 ALKDLYKSFISDYPIVSI--EDPF--DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~i--EdP~--~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
+.+++ .+.+++.++.+| ..-. ..-|++..++++ .+ +||+|.-. +++.+++.++++.+ +|.|++-=
T Consensus 153 ~~~~l-a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~--ipVIgnGg-I~s~eda~~~l~~G-aD~VmiGR 221 (233)
T cd02911 153 DDEEL-ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TE--LFIIGNNS-VTTIESAKEMFSYG-ADMVSVAR 221 (233)
T ss_pred CHHHH-HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CC--CEEEEECC-cCCHHHHHHHHHcC-CCEEEEcC
Confidence 34443 455666664443 1111 123555555554 45 99977654 56799999999866 99988743
No 105
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.90 E-value=80 Score=30.59 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHH
Q 043137 282 DALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361 (445)
Q Consensus 282 ~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 361 (445)
.+-++.+.+.++++++.++=+|+.+.+.+-+..+ .+ -..|.+.+. ++ .++.+.+ .+.--.|.+|-+..+++.
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~---vd-~~kIga~~~--~n-~~LL~~~-a~~gkPV~lk~G~~~s~~ 148 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY---AD-MLQIGSRNM--QN-FELLKEV-GKTKKPILLKRGMSATLE 148 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh---CC-EEEECcccc--cC-HHHHHHH-hcCCCcEEEeCCCCCCHH
Confidence 4455566788889999999999998887777665 22 134444442 44 3344444 345568889999999999
Q ss_pred HHHHHHHHHHHcCC-cEEecCC
Q 043137 362 ESIEAVRMSKQAGW-GVMASHR 382 (445)
Q Consensus 362 ~a~~ia~~A~~~g~-~~~~~~~ 382 (445)
+++.++...++.|- ++++-|+
T Consensus 149 e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 149 EWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred HHHHHHHHHHhcCCCeEEEEEC
Confidence 99999998887765 5666664
No 106
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=67.65 E-value=34 Score=33.46 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+...++++.++ +||++.-- +.+++++.+++..+ +|.|++-
T Consensus 224 ~~v~~i~~~~~--ipvi~~GG-I~s~~da~~~l~~G-Ad~V~ig 263 (300)
T TIGR01037 224 RMVYDVYKMVD--IPIIGVGG-ITSFEDALEFLMAG-ASAVQVG 263 (300)
T ss_pred HHHHHHHhcCC--CCEEEECC-CCCHHHHHHHHHcC-CCceeec
Confidence 45566777776 88865543 46799999999877 8888865
No 107
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=67.04 E-value=58 Score=31.37 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=69.1
Q ss_pred eeeE-ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCC
Q 043137 297 IVSI-EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 297 i~~i-EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~ 375 (445)
+..+ |.-+-..+++.++.+++.++ +||...+. .+.+.++...... .+|++.+...-. ......++...|+..|+
T Consensus 87 isvlte~~~f~g~~~~l~~v~~~v~--iPvl~kdf-i~~~~qi~~a~~~-GAD~VlLi~~~l-~~~~l~~li~~a~~lGl 161 (260)
T PRK00278 87 LSVLTDERFFQGSLEYLRAARAAVS--LPVLRKDF-IIDPYQIYEARAA-GADAILLIVAAL-DDEQLKELLDYAHSLGL 161 (260)
T ss_pred EEEecccccCCCCHHHHHHHHHhcC--CCEEeeee-cCCHHHHHHHHHc-CCCEEEEEeccC-CHHHHHHHHHHHHHcCC
Confidence 4433 55556678999999999988 99987775 5667776666544 568888887765 34788889999999999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
.+++-....+ + +.-|..+++.++-.+
T Consensus 162 ~~lvevh~~~-E----~~~A~~~gadiIgin 187 (260)
T PRK00278 162 DVLVEVHDEE-E----LERALKLGAPLIGIN 187 (260)
T ss_pred eEEEEeCCHH-H----HHHHHHcCCCEEEEC
Confidence 9876542221 1 233444566665544
No 108
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.75 E-value=53 Score=32.89 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------C------cccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q------IGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------~------~GGit~a~~ia~~A~~~g~ 375 (445)
++..++++++++ +++|+++.. + +++.++.+++.+ +|++.+-+. | ..-+|...+.++.|+.+|+
T Consensus 139 i~~ik~ik~~~P-~~~vIaGNV-~-T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gv 214 (346)
T PRK05096 139 VQFVAKAREAWP-DKTICAGNV-V-TGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGG 214 (346)
T ss_pred HHHHHHHHHhCC-CCcEEEecc-c-CHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCC
Confidence 345677888875 388877765 3 588888888754 677653332 2 2458899999999999999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.....-.+++- --|++.++.++.+|++.
T Consensus 215 piIADGGi~~sGDI---~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 215 QIVSDGGCTVPGDV---AKAFGGGADFVMLGGML 245 (346)
T ss_pred CEEecCCcccccHH---HHHHHcCCCEEEeChhh
Confidence 98655433233222 12455578888888854
No 109
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=66.37 E-value=19 Score=38.70 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccH----------------------HHHH
Q 043137 310 EHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV----------------------TESI 364 (445)
Q Consensus 310 ~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGi----------------------t~a~ 364 (445)
+.+..+++++ +.++|+++|=.+ ++.-....++ ++|-+.|.++..|.- ....
T Consensus 69 ~~l~~I~~~l~~~G~~iPLVADIHF--~~~~A~~a~~--~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~ 144 (611)
T PRK02048 69 ENLMNINIGLRSQGYMVPLVADVHF--NPKVADVAAQ--YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFV 144 (611)
T ss_pred HhHHHHHHHHhhcCCCCCEEEecCC--CcHHHHHHHH--hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHH
Confidence 3445555553 123999999654 4555545555 499999999999883 5677
Q ss_pred HHHHHHHHcCCcEEecCCCCC
Q 043137 365 EAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 365 ~ia~~A~~~g~~~~~~~~~~e 385 (445)
.++..|+++|+.+-+|-+.|.
T Consensus 145 ~~v~~ak~~~~~iRIGvN~GS 165 (611)
T PRK02048 145 PFLNICKENHTAIRIGVNHGS 165 (611)
T ss_pred HHHHHHHHCCCCEEEecCCcC
Confidence 899999999999999886553
No 110
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=65.80 E-value=68 Score=32.21 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHH
Q 043137 282 DALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361 (445)
Q Consensus 282 ~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 361 (445)
.+-++.+.+.++++++.++=+|+.+++.+-..++ .+ -+.|.+.+ +++..=++.+- +.---|.+|-+..+++.
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~---vd-~lqIgAr~--~~N~~LL~~va--~~~kPViLk~G~~~ti~ 214 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY---VD-ILQIGARN--MQNFDLLKEVG--KTNKPVLLKRGMSATIE 214 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh---CC-eEEECccc--ccCHHHHHHHH--cCCCcEEEeCCCCCCHH
Confidence 4556677777889999999999988887777655 22 13443443 34544344443 23457888888888999
Q ss_pred HHHHHHHHHHHcCC-cEEecCC
Q 043137 362 ESIEAVRMSKQAGW-GVMASHR 382 (445)
Q Consensus 362 ~a~~ia~~A~~~g~-~~~~~~~ 382 (445)
+++.++....+.|- ++++-|+
T Consensus 215 E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 215 EWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred HHHHHHHHHHHcCCCeEEEEEC
Confidence 99999998887765 5666664
No 111
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.41 E-value=53 Score=33.20 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=68.1
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+++. ++-++.+.+..+++++.++=+|+..++.+-..++ .+ -+.|.+.+ +++.. +.+.+. +.--.|++|-+.
T Consensus 147 ~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~---~d-~lqIga~~--~~n~~-LL~~va-~t~kPVllk~G~ 217 (352)
T PRK13396 147 QGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEV---AD-VIQVGARN--MQNFS-LLKKVG-AQDKPVLLKRGM 217 (352)
T ss_pred CCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh---CC-eEEECccc--ccCHH-HHHHHH-ccCCeEEEeCCC
Confidence 3444 6667777888889999999999998887777665 33 14443443 34533 433332 234588899999
Q ss_pred cccHHHHHHHHHHHHHcCC-cEEecCC
Q 043137 357 IGSVTESIEAVRMSKQAGW-GVMASHR 382 (445)
Q Consensus 357 ~GGit~a~~ia~~A~~~g~-~~~~~~~ 382 (445)
.+++.+++.++.+..+.|- ++++-|+
T Consensus 218 ~~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 218 AATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9999999999999888775 5766665
No 112
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=64.48 E-value=59 Score=29.96 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++.+. .+.+-+-++..+|=++...+ ++..++++++.+ ++-|-++- +.+.+++++.++.++-=++.|-.+
T Consensus 18 ~~~~a~~~-~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p-~~~vGAGT--V~~~e~a~~a~~aGA~FivSP~~~--- 90 (196)
T PF01081_consen 18 DPEDAVPI-AEALIEGGIRAIEITLRTPNALEAIEALRKEFP-DLLVGAGT--VLTAEQAEAAIAAGAQFIVSPGFD--- 90 (196)
T ss_dssp SGGGHHHH-HHHHHHTT--EEEEETTSTTHHHHHHHHHHHHT-TSEEEEES----SHHHHHHHHHHT-SEEEESS-----
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEecCCccHHHHHHHHHHHCC-CCeeEEEe--ccCHHHHHHHHHcCCCEEECCCCC---
Confidence 45677776 45566788999999997655 466677888887 36664443 467999999999998777666543
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.++++.|+++|+.++.|.+. -|+ +.-|...++..+|
T Consensus 91 -----~~v~~~~~~~~i~~iPG~~T-ptE----i~~A~~~G~~~vK 126 (196)
T PF01081_consen 91 -----PEVIEYAREYGIPYIPGVMT-PTE----IMQALEAGADIVK 126 (196)
T ss_dssp -----HHHHHHHHHHTSEEEEEESS-HHH----HHHHHHTT-SEEE
T ss_pred -----HHHHHHHHHcCCcccCCcCC-HHH----HHHHHHCCCCEEE
Confidence 46888999999998776642 222 2223344566666
No 113
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=64.11 E-value=1.5e+02 Score=28.95 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=75.9
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--C-CCcCCHHHHHHHHHHhCC-----CceEEeCcccccCHHHHHHHHhcCCCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--P-FDQDDWEHYAKLTSEVGE-----KVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P-~~~~D~~~~~~L~~~~~~-----~vpI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
..++.++-++++..+++..++..||= | +.++|++...++.+.... ++.+++= +.+..++...++.+ ++
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~A~~~g-~~ 89 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGF---VDGDKSVDWIKSAG-AK 89 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEe---cCcHHHHHHHHHCC-CC
Confidence 45788888887555458889999998 5 567677777777653310 1333221 22345666666543 45
Q ss_pred EEEecc-------------CCcccHHHHHHHHHHHHHcCCcEEecCCC-C---CChhhHHHHH---HhhhcCCccccCC
Q 043137 349 ALLLKV-------------NQIGSVTESIEAVRMSKQAGWGVMASHRS-G---ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 349 ~v~ik~-------------~~~GGit~a~~ia~~A~~~g~~~~~~~~~-~---et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
.+.+-+ +.-.-+....+++.+|+..|+.+.++-.. + .+......++ +...++..+.+.+
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~D 168 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPD 168 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 555443 22345666778899999999988665531 1 2233444443 4455676666544
No 114
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=63.73 E-value=71 Score=32.51 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.|+..+.++.+..+ +||++.. +.+.++++++++. .+|+|.
T Consensus 175 ~~p~~l~~~i~~~~--IPVI~G~--V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 175 GEPLNLKEFIGELD--VPVIAGG--VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred CCHHHHHHHHHHCC--CCEEEeC--CCCHHHHHHHHHc-CCCEEE
Confidence 46788899998887 9987643 3568999999984 588887
No 115
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=63.09 E-value=56 Score=29.65 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcC-CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQD-DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~-D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++.++. +.+.+.++.+||=.+... ..+..+++++..+ .+.|-++.. .+.+++...++.++ |++.. +
T Consensus 14 ~~~~~~~~~-~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag~v--~~~~~~~~a~~~Ga-~~i~~-----p 83 (190)
T cd00452 14 DAEDALALA-EALIEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAGTV--LTPEQADAAIAAGA-QFIVS-----P 83 (190)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEEeC--CCHHHHHHHHHcCC-CEEEc-----C
Confidence 567777764 455678899999887643 4567888888875 366655543 45788988887776 44431 2
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+. ..++.+.++.++++++++.++. ++ +.-|...++.++++
T Consensus 84 ~~--~~~~~~~~~~~~~~~i~gv~t~-~e----~~~A~~~Gad~i~~ 123 (190)
T cd00452 84 GL--DPEVVKAANRAGIPLLPGVATP-TE----IMQALELGADIVKL 123 (190)
T ss_pred CC--CHHHHHHHHHcCCcEECCcCCH-HH----HHHHHHCCCCEEEE
Confidence 21 1467778888999987776421 11 23334457788776
No 116
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=62.26 E-value=98 Score=31.16 Aligned_cols=68 Identities=13% Similarity=0.316 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccCCeeeE---------ECC-CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 282 DALKDLYKSFISDYPIVSI---------EDP-FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 282 ~~ai~~~~~~l~~~~i~~i---------EdP-~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
++.+++ ++++++.|..|| ..+ .++-|++.++.|++.+++ +|+++.-. +.+++|+.+.++.-.+|.|+
T Consensus 155 ~kTvd~-ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGn-I~~~~d~~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 155 EKTVDY-AKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGN-ILSLEDVERCLKYTGADGVM 231 (358)
T ss_pred HHHHHH-HHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCC-cCcHHHHHHHHHHhCCceEE
Confidence 355665 456777775554 222 456689999999999986 99877665 56799999999978888887
Q ss_pred e
Q 043137 352 L 352 (445)
Q Consensus 352 i 352 (445)
.
T Consensus 232 ~ 232 (358)
T KOG2335|consen 232 S 232 (358)
T ss_pred e
Confidence 3
No 117
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=61.94 E-value=59 Score=32.59 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc-------CC----c--ccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV-------NQ----I--GSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~-------~~----~--GGit~a~~ia~~A~~~g~ 375 (445)
++..++|+++.+. .+|+++.. -++++++.+++.+ +|++.+-+ +| + .-+|...++++.|+.+++
T Consensus 138 i~~ik~ir~~~p~-~~viaGNV--~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v 213 (343)
T TIGR01305 138 VEFVKLVREAFPE-HTIMAGNV--VTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKG 213 (343)
T ss_pred HHHHHHHHhhCCC-CeEEEecc--cCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCC
Confidence 4567788888763 77777764 3599999998764 67766442 11 2 368888999999998899
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++.....-.+.| +--|+|+++.++.+|++.
T Consensus 214 ~VIaDGGIr~~gD---I~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 214 HIISDGGCTCPGD---VAKAFGAGADFVMLGGMF 244 (343)
T ss_pred eEEEcCCcCchhH---HHHHHHcCCCEEEECHhh
Confidence 9866553222222 112455678888888744
No 118
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=61.76 E-value=79 Score=32.37 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC----CcccHHHHHHHHHHHHHc--CCcEEec
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----QIGSVTESIEAVRMSKQA--GWGVMAS 380 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~----~~GGit~a~~ia~~A~~~--g~~~~~~ 380 (445)
-+|+.+++|++.++ +||+.-+. .+.++++.+++.+ +|+|.+.-. .-+++..+.-+.+++++. .+++++.
T Consensus 240 ~tW~~i~~lr~~~~--~pvivKgV--~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 240 LTWEDLAFLREWTD--LPIVLKGI--LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred CCHHHHHHHHHhcC--CCEEEecC--CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 47899999999998 99977775 4689999888765 677666521 012333344444444444 3887765
Q ss_pred CCCCCChhhHHHHHHhhhcCCccccCCCC-------CchhHHHHHHHH
Q 043137 381 HRSGETEDTFIADLSVGLATGQIKTGAPC-------RSERLAKYNQLL 421 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~~~~~~~G~~~-------~~e~~~k~n~ll 421 (445)
+. .-++....- |+++|+..+..|.|. +.+.+.++=+.|
T Consensus 315 GG-Ir~G~Dv~K--ALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l 359 (383)
T cd03332 315 SG-VRTGADIMK--ALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNL 359 (383)
T ss_pred CC-cCcHHHHHH--HHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHH
Confidence 53 222222222 344467666666543 344554444444
No 119
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.67 E-value=1.9e+02 Score=29.28 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=73.6
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECC--CCc-------CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDP--FDQ-------DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP--~~~-------~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~ 347 (445)
..++.++-+++ .+.|.+.++..||-- +.+ |+.+..+.+++..+ +.+. .+ +.+..++.+.++.+ +
T Consensus 63 ~~~s~e~Ki~i-a~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~--~~~~--~l-~~n~~die~A~~~g-~ 135 (347)
T PLN02746 63 NIVPTSVKVEL-IQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEG--ARFP--VL-TPNLKGFEAAIAAG-A 135 (347)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccC--Ccee--EE-cCCHHHHHHHHHcC-c
Confidence 45788888876 566888999999953 332 44556667765333 3221 11 23689999998875 4
Q ss_pred CEEEeccC---------CcccHHHHH----HHHHHHHHcCCcEE------ecCC-CCCChhhHH---HHHHhhhcCCccc
Q 043137 348 NALLLKVN---------QIGSVTESI----EAVRMSKQAGWGVM------ASHR-SGETEDTFI---ADLSVGLATGQIK 404 (445)
Q Consensus 348 d~v~ik~~---------~~GGit~a~----~ia~~A~~~g~~~~------~~~~-~~et~~~~~---~~la~a~~~~~~~ 404 (445)
+.+.+-++ .--+..+++ +++.+|+++|+.+. +++- .+.+..... +.-+...++..+.
T Consensus 136 ~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~ 215 (347)
T PLN02746 136 KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEIS 215 (347)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 55554421 112345554 69999999999873 3321 111223333 3445555777777
Q ss_pred cCCC
Q 043137 405 TGAP 408 (445)
Q Consensus 405 ~G~~ 408 (445)
+.+.
T Consensus 216 l~DT 219 (347)
T PLN02746 216 LGDT 219 (347)
T ss_pred ecCC
Confidence 5553
No 120
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=61.50 E-value=1.9e+02 Score=29.42 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=78.6
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.|++.++..||=-+| ++|++..+.+.+.. .+..+++-- .....++...++.+ ++.+.+-
T Consensus 21 ~~~s~e~k~~i-a~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~-~~~~i~~~~--r~~~~di~~a~~~g-~~~i~i~ 95 (378)
T PRK11858 21 VVFTNEEKLAI-ARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLG-LNASILALN--RAVKSDIDASIDCG-VDAVHIF 95 (378)
T ss_pred CCCCHHHHHHH-HHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcC-CCeEEEEEc--ccCHHHHHHHHhCC-cCEEEEE
Confidence 45788898887 56788999999996333 34556777776642 234444432 22478888888764 5666654
Q ss_pred cCC-------------cccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHHHH---HhhhcCCccccCC
Q 043137 354 VNQ-------------IGSVTESIEAVRMSKQAGWGVMASHR-SGETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~~-------------~GGit~a~~ia~~A~~~g~~~~~~~~-~~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.- -.-+..+.+.+++|++.|+.+.++.. ...+...+...+ +...++..+.+-+
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~D 166 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCD 166 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 331 12245566788999999999888753 223444555544 3444566655433
No 121
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=60.70 E-value=66 Score=33.68 Aligned_cols=93 Identities=11% Similarity=0.216 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------C----c--ccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q----I--GSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------~----~--GGit~a~~ia~~A~~~g~ 375 (445)
++..++++++.+ ++||++... .++++++.+++.+ +|+|.+-++ + + ..++...+++..|+..++
T Consensus 253 ~~~i~~i~~~~~-~~~vi~G~v--~t~~~a~~l~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~v 328 (450)
T TIGR01302 253 IDSIKEIKKTYP-DLDIIAGNV--ATAEQAKALIDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGI 328 (450)
T ss_pred HHHHHHHHHhCC-CCCEEEEeC--CCHHHHHHHHHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCC
Confidence 445677887753 399866653 4699999998865 577764431 1 1 134666778888889999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+++..+....+.+ +--|+++++..+.+|+.
T Consensus 329 pviadGGi~~~~d---i~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 329 PVIADGGIRYSGD---IVKALAAGADAVMLGSL 358 (450)
T ss_pred eEEEeCCCCCHHH---HHHHHHcCCCEEEECch
Confidence 9866442211111 22244557888888773
No 122
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=60.18 E-value=37 Score=37.15 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHHHHHHh---CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccH----------------------HHH
Q 043137 309 WEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV----------------------TES 363 (445)
Q Consensus 309 ~~~~~~L~~~~---~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGi----------------------t~a 363 (445)
-+.+..+++++ +.++|+++|=.+ ++.-....++. +|-|.|.++..|.- ...
T Consensus 137 A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~--vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f 212 (733)
T PLN02925 137 ADACFEIKNTLVQKGYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVF 212 (733)
T ss_pred HHhHHHHHHHHhhcCCCCCEEEecCC--CHHHHHHHHHh--cCCeEECCcccCCccccccccccchhhhhhhHHHHHHHH
Confidence 34455555541 123999999653 46666566554 99999999999876 345
Q ss_pred HHHHHHHHHcCCcEEecCCCCC
Q 043137 364 IEAVRMSKQAGWGVMASHRSGE 385 (445)
Q Consensus 364 ~~ia~~A~~~g~~~~~~~~~~e 385 (445)
..++..|+++|+.+-+|-+.|.
T Consensus 213 ~~~v~~ak~~~~~iRIGvN~GS 234 (733)
T PLN02925 213 TPLVEKCKKYGRAMRIGTNHGS 234 (733)
T ss_pred HHHHHHHHHCCCCEEEecCCcC
Confidence 5699999999999999886553
No 123
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=59.61 E-value=2e+02 Score=29.07 Aligned_cols=126 Identities=7% Similarity=0.088 Sum_probs=79.3
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCc---CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQ---DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~---~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.+++.++..||=-+|. +|++..+.+++... +..+++= ...+.++++..++.+ ++.+.+-
T Consensus 18 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~-~~~i~~~--~r~~~~di~~a~~~g-~~~i~i~ 92 (365)
T TIGR02660 18 VAFTAAEKLAI-ARALDEAGVDELEVGIPAMGEEERAVIRAIVALGL-PARLMAW--CRARDADIEAAARCG-VDAVHIS 92 (365)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCC-CcEEEEE--cCCCHHHHHHHHcCC-cCEEEEE
Confidence 45788998887 567889999999995443 45677777776533 2444332 123578888877654 4666654
Q ss_pred cCCc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHHHHH---HhhhcCCccccCC
Q 043137 354 VNQI-------------GSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~~~-------------GGit~a~~ia~~A~~~g~~~~~~~~~~-et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.-. --+..+.+++++|+++|+.+.++.... .+...+.+.+ +...++..+.+.+
T Consensus 93 ~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 93 IPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred EccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 4321 124445588999999999988876422 3344554444 3444666666444
No 124
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.58 E-value=78 Score=33.45 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------C------cccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q------IGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------~------~GGit~a~~ia~~A~~~g~ 375 (445)
++..++++++.+ +++|++++. .+.+..+.+++.+ +|+|.+-+. + ..-+|...++++.|+.+++
T Consensus 256 ~~~i~~ik~~~p-~~~v~agnv--~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~ 331 (479)
T PRK07807 256 LEALRAVRALDP-GVPIVAGNV--VTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGA 331 (479)
T ss_pred HHHHHHHHHHCC-CCeEEeecc--CCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCC
Confidence 346788888875 389877664 4589999999876 788763221 1 1357778888888889999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+++..+....+++. --|++.++..+.+|+.
T Consensus 332 ~via~ggi~~~~~~---~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 332 HVWADGGVRHPRDV---ALALAAGASNVMIGSW 361 (479)
T ss_pred cEEecCCCCCHHHH---HHHHHcCCCeeeccHh
Confidence 98765533333222 1233345666666663
No 125
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=59.24 E-value=47 Score=33.09 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~ 354 (445)
++..+++++.++.++||+|--- +.+.+|+.+++..+ +|.|++--
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GG-I~t~~da~e~l~aG-Ad~V~vg~ 310 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGG-ISSGEDAYEKIRAG-ASLVQLYT 310 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECC-CCCHHHHHHHHHcC-CCHHhccH
Confidence 4555677777733378754433 45688888888755 77777653
No 126
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.83 E-value=73 Score=29.81 Aligned_cols=126 Identities=16% Similarity=0.223 Sum_probs=78.8
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHh---cCCCCEEE
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIK---EKTCNALL 351 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~---~~a~d~v~ 351 (445)
.++.++.+++ .+.+++.++..||=.+ .+++++.++++++.... ..+.+-- .....+++..++ .-.+|.+.
T Consensus 10 ~~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~g~~~i~ 85 (237)
T PF00682_consen 10 AFSTEEKLEI-AKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALC--RANEEDIERAVEAAKEAGIDIIR 85 (237)
T ss_dssp T--HHHHHHH-HHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEE--ESCHHHHHHHHHHHHHTTSSEEE
T ss_pred CcCHHHHHHH-HHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceee--eehHHHHHHHHHhhHhccCCEEE
Confidence 3677887776 5668889999999763 45677888888877653 5553332 234666766443 45666666
Q ss_pred eccCCc-------------ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHH---HHHhhhcCCccccCC
Q 043137 352 LKVNQI-------------GSVTESIEAVRMSKQAGWGVMASHRS-GETEDTFIA---DLSVGLATGQIKTGA 407 (445)
Q Consensus 352 ik~~~~-------------GGit~a~~ia~~A~~~g~~~~~~~~~-~et~~~~~~---~la~a~~~~~~~~G~ 407 (445)
+-.+.. ..+..+.+++.+|++.|..+.++... ..+...... ..+...++..+.+-+
T Consensus 86 i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 86 IFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp EEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred ecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 554332 23778889999999999999877632 233344333 334444666666443
No 127
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=58.46 E-value=65 Score=28.89 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcC--CcEEecCCCCCCh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAG--WGVMASHRSGETE 387 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g--~~~~~~~~~~et~ 387 (445)
+.++++++..+...+|.-+ +.+.+++.+.++.+ +|+|++|-+. ..+.++++...+..+ +.+.+++. ..
T Consensus 68 ~av~~~~~~~~~~~~I~VE---v~~~ee~~ea~~~g-~d~I~lD~~~---~~~~~~~v~~l~~~~~~v~ie~SGG---I~ 137 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVE---VENLEEAEEALEAG-ADIIMLDNMS---PEDLKEAVEELRELNPRVKIEASGG---IT 137 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHTT--SEEEEES-C---HHHHHHHHHHHHHHTTTSEEEEESS---SS
T ss_pred HHHHHHHHhCCCCceEEEE---cCCHHHHHHHHHhC-CCEEEecCcC---HHHHHHHHHHHhhcCCcEEEEEECC---CC
Confidence 4667777776654455333 34578888888866 8999999884 566777777655544 44444442 22
Q ss_pred hhHHHHHHhhhcCCccccCC
Q 043137 388 DTFIADLSVGLATGQIKTGA 407 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~G~ 407 (445)
...+..++- .+..++-.|.
T Consensus 138 ~~ni~~ya~-~gvD~isvg~ 156 (169)
T PF01729_consen 138 LENIAEYAK-TGVDVISVGS 156 (169)
T ss_dssp TTTHHHHHH-TT-SEEEECH
T ss_pred HHHHHHHHh-cCCCEEEcCh
Confidence 333444442 3555555554
No 128
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=57.14 E-value=1.1e+02 Score=32.39 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------------CcccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------------QIGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------------~~GGit~a~~ia~~A~~~g~ 375 (445)
.+..+++++..+ ++||+++.. .+.+.++.+++.++ |+|.+-.. -...++..++.++.|+.+|+
T Consensus 254 ~~~i~~i~~~~~-~~~vi~g~~--~t~~~~~~l~~~G~-d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~ 329 (475)
T TIGR01303 254 ISAIKAVRALDL-GVPIVAGNV--VSAEGVRDLLEAGA-NIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGG 329 (475)
T ss_pred HHHHHHHHHHCC-CCeEEEecc--CCHHHHHHHHHhCC-CEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCC
Confidence 345677777763 399988854 45899999988765 77762221 12457778888888899999
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++..+....+.+ +--|+++++..+..|++.
T Consensus 330 ~viadGgi~~~~d---i~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 330 HVWADGGVRHPRD---VALALAAGASNVMVGSWF 360 (475)
T ss_pred cEEEeCCCCCHHH---HHHHHHcCCCEEeechhh
Confidence 9866553322222 122444567777777743
No 129
>PRK06852 aldolase; Validated
Probab=56.61 E-value=55 Score=32.37 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=48.4
Q ss_pred HHHHHhcCC-----CCEEEeccCCcc-----cHHHHHHHHHHHHHcCCcEEecC--CC----CCC---hhhHHHHHHhhh
Q 043137 338 VEKAIKEKT-----CNALLLKVNQIG-----SVTESIEAVRMSKQAGWGVMASH--RS----GET---EDTFIADLSVGL 398 (445)
Q Consensus 338 ~~~~i~~~a-----~d~v~ik~~~~G-----Git~a~~ia~~A~~~g~~~~~~~--~~----~et---~~~~~~~la~a~ 398 (445)
+++.++.++ +|+|-.-+..-+ -+.++-+++.-|+++|+++++-. +. .+. .++.++++|+-+
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 555666664 677777665422 36677788888999999986521 11 111 245677889999
Q ss_pred cCCccccCCC
Q 043137 399 ATGQIKTGAP 408 (445)
Q Consensus 399 ~~~~~~~G~~ 408 (445)
++.++|.-.|
T Consensus 201 GADIVKv~y~ 210 (304)
T PRK06852 201 GADFVKVNYP 210 (304)
T ss_pred cCCEEEecCC
Confidence 9999998777
No 130
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=56.59 E-value=1.8e+02 Score=27.94 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=58.1
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEE----------CCCCc-CCHHH----HHHHHHHhCCCceEEeCcccccCHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIE----------DPFDQ-DDWEH----YAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iE----------dP~~~-~D~~~----~~~L~~~~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
...+.+++++...+++++ +-.+|. +|+.+ ++++- .+.|++.++ +||+-|-. +++-++..
T Consensus 19 ~~~~~~~~~~~a~~~~~~-GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~--~plSIDT~---~~~v~e~a 92 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAE-GADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELD--VLISVDTF---RAEVARAA 92 (257)
T ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCC--CcEEEeCC---CHHHHHHH
Confidence 345777888776666553 333332 12222 12222 233444444 99999953 47888888
Q ss_pred HhcCCCCEEE-eccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 342 IKEKTCNALL-LKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 342 i~~~a~d~v~-ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
++.+ +++|| +...+ .. -++..++..+|..+++-|+.+
T Consensus 93 l~~G-~~iINdisg~~----~~-~~~~~l~~~~~~~vV~m~~~g 130 (257)
T cd00739 93 LEAG-ADIINDVSGGS----DD-PAMLEVAAEYGAPLVLMHMRG 130 (257)
T ss_pred HHhC-CCEEEeCCCCC----CC-hHHHHHHHHcCCCEEEECCCC
Confidence 8885 78776 33221 11 567888999999999988643
No 131
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.27 E-value=2.3e+02 Score=29.21 Aligned_cols=95 Identities=11% Similarity=0.162 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC---------cc----cHHHHHHHHHHHHHcC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---------IG----SVTESIEAVRMSKQAG 374 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~---------~G----Git~a~~ia~~A~~~g 374 (445)
-.+-.++++++.+ +++|+.... .++++.+.+++.+ +|+|.+-..- .| .++....+..+++..+
T Consensus 181 ~~~~v~~ik~~~p-~~~vi~g~V--~T~e~a~~l~~aG-aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~ 256 (404)
T PRK06843 181 IIELVKKIKTKYP-NLDLIAGNI--VTKEAALDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTN 256 (404)
T ss_pred HHHHHHHHHhhCC-CCcEEEEec--CCHHHHHHHHHcC-CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcC
Confidence 3456788888885 377755443 4689999998875 7777643211 12 4567777888888889
Q ss_pred CcEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 375 WGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 375 ~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
++++.......+.+ +--|+++++..+.+|.+.
T Consensus 257 vpVIAdGGI~~~~D---i~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 257 ICIIADGGIRFSGD---VVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CeEEEeCCCCCHHH---HHHHHHcCCCEEEEccee
Confidence 99866553222221 222445578888888754
No 132
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=55.58 E-value=1.5e+02 Score=31.88 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec-c--CCcccHHHHHHHHHHHHHcCCcE
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V--NQIGSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~--~~~GGit~a~~ia~~A~~~g~~~ 377 (445)
|++.++.+++.++ +||++.-- +.+++++.++++...+|++..- + -+--++.+.++ ..+..|+.+
T Consensus 470 d~~l~~~v~~~~~--ipviasGG-~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~---~l~~~gi~v 536 (538)
T PLN02617 470 DIELVKLVSDAVT--IPVIASSG-AGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKE---HLLEEGIET 536 (538)
T ss_pred CHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHH---HHHHCCCcc
Confidence 7899999999988 88744332 4679999999987666665542 2 12234455444 445567664
No 133
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=55.49 E-value=2.8e+02 Score=29.43 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=78.1
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CCC-cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC---CCCEE
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PFD-QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK---TCNAL 350 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~~-~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~---a~d~v 350 (445)
..++.++-+++ .+.|++.++.+||= |.. +.|++..+++++... +..|++= ...+..++.+.++.. ..+.|
T Consensus 18 ~~~s~e~K~~i-a~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~-~~~i~al--~r~~~~did~a~~al~~~~~~~v 93 (494)
T TIGR00973 18 ASLTVEEKLQI-ALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK-NPRVCGL--ARCVEKDIDAAAEALKPAEKFRI 93 (494)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC-CCEEEEE--cCCCHHhHHHHHHhccccCCCEE
Confidence 45788898887 56789999999994 433 567788888876554 2334321 122477887776642 23444
Q ss_pred EeccC-------------CcccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHHHHH---HhhhcCCccccCC
Q 043137 351 LLKVN-------------QIGSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 351 ~ik~~-------------~~GGit~a~~ia~~A~~~g~~~~~~~~~~-et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
.+-.. +-.-+..+.+++.+|+++|..+.++.... .+...++..+ +...++..+.+.+
T Consensus 94 ~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 94 HTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 43222 22335566778999999999998877422 2344444433 4444666666544
No 134
>PLN02979 glycolate oxidase
Probab=55.29 E-value=1.6e+02 Score=29.87 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC----cccHHHHHHHHHHHHHc--CCcEEe
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ----IGSVTESIEAVRMSKQA--GWGVMA 379 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~----~GGit~a~~ia~~A~~~--g~~~~~ 379 (445)
.-+|+.+++|++..+ +||+.-+. .+.++++++++.+ +|.|.+.-.- -++++.+.-+.+++++. .+++++
T Consensus 209 ~ltW~dl~wlr~~~~--~PvivKgV--~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 209 TLSWKDVQWLQTITK--LPILVKGV--LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred CCCHHHHHHHHhccC--CCEEeecC--CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 347889999999998 99988886 3589999888776 6666554321 11222333333344443 377766
Q ss_pred cCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 380 SHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
.+. ..++....- |+++|+..+-.|.|.
T Consensus 284 dGG-Ir~G~Di~K--ALALGAdaV~iGrp~ 310 (366)
T PLN02979 284 DGG-VRRGTDVFK--ALALGASGIFIGRPV 310 (366)
T ss_pred eCC-cCcHHHHHH--HHHcCCCEEEEcHHH
Confidence 552 223222222 455567777766643
No 135
>PRK00915 2-isopropylmalate synthase; Validated
Probab=55.26 E-value=2.9e+02 Score=29.49 Aligned_cols=127 Identities=13% Similarity=0.185 Sum_probs=77.8
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhc---CCCCEE
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKE---KTCNAL 350 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~---~a~d~v 350 (445)
..+|.++-+++ .+.|++.++..||=-+ .+.|++..+++.+... +..|++=-. .+..++...++. -..+.+
T Consensus 21 ~~~s~e~K~~i-a~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~-~~~i~a~~r--~~~~did~a~~a~~~~~~~~v 96 (513)
T PRK00915 21 ASLTVEEKLQI-AKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVK-NSTVCGLAR--AVKKDIDAAAEALKPAEAPRI 96 (513)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC-CCEEEEEcc--CCHHHHHHHHHHhhcCCCCEE
Confidence 45788898887 5678999999999844 4567888888876553 355543211 246777777632 223334
Q ss_pred EeccC-------------CcccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHHHHH---HhhhcCCccccCC
Q 043137 351 LLKVN-------------QIGSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 351 ~ik~~-------------~~GGit~a~~ia~~A~~~g~~~~~~~~~~-et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
.+-.. +-.-+..+.+.+++|+++|..+.++.... .+...+...+ +...++..+.+.+
T Consensus 97 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 97 HTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred EEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 43221 11223445688899999999998877422 3344444444 4444666666444
No 136
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=55.24 E-value=1.7e+02 Score=28.03 Aligned_cols=95 Identities=13% Similarity=0.204 Sum_probs=69.6
Q ss_pred ccCHHHHHHHHHHhhccCC---eeeE-ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 278 KISGDALKDLYKSFISDYP---IVSI-EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~---i~~i-EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
.+++.+..+. .++.+ |..+ |..+-..+++.++++++.++ +||.--+.. -++.++..... -.+|+|.+-
T Consensus 60 ~~d~~~~A~~----y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~--~PvL~KDFI-id~~QI~ea~~-~GADavLLI 131 (247)
T PRK13957 60 DYHPVQIAKT----YETLGASAISVLTDQSYFGGSLEDLKSVSSELK--IPVLRKDFI-LDEIQIREARA-FGASAILLI 131 (247)
T ss_pred CCCHHHHHHH----HHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcC--CCEEecccc-CCHHHHHHHHH-cCCCEEEeE
Confidence 4566665443 34443 5544 54566789999999999998 999888874 56888877765 557888877
Q ss_pred cCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 354 ~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+.-.+ -....+....|+..|+.+.+--
T Consensus 132 ~~~L~-~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 132 VRILT-PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HhhCC-HHHHHHHHHHHHHcCCceEEEE
Confidence 76654 4578889999999999987654
No 137
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=55.20 E-value=1.4e+02 Score=27.56 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCC-HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDD-WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D-~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G 358 (445)
+.+++.+. .+.+-+.++..||=.+...+ .+.++.|+++.+.++.|-++- +.+.+++...++.++ |++.. +
T Consensus 20 ~~~~~~~~-~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGT--V~~~~~~~~a~~aGA-~fivs-----p 90 (206)
T PRK09140 20 TPDEALAH-VGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGT--VLSPEQVDRLADAGG-RLIVT-----P 90 (206)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEe--cCCHHHHHHHHHcCC-CEEEC-----C
Confidence 56777776 44556688999998886544 457888888886445664443 356899999888877 55443 2
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCcccc
Q 043137 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKT 405 (445)
Q Consensus 359 Git~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~ 405 (445)
+. -.++.+.++..|+.+.+|+.+. ++ +.-|...++.++++
T Consensus 91 ~~--~~~v~~~~~~~~~~~~~G~~t~-~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 NT--DPEVIRRAVALGMVVMPGVATP-TE----AFAALRAGAQALKL 130 (206)
T ss_pred CC--CHHHHHHHHHCCCcEEcccCCH-HH----HHHHHHcCCCEEEE
Confidence 21 2356667778888877765321 11 22344456777775
No 138
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=55.00 E-value=1.2e+02 Score=30.86 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=56.4
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
+...+ -++.+.+.++++++.|+=+|+..++.+-..++ .+ -+.|.+.+ +++. ++.+.+. +.--.|++|-+..
T Consensus 165 g~~~e-~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~---vd-~lkI~s~~--~~n~-~LL~~~a-~~gkPVilk~G~~ 235 (360)
T PRK12595 165 GLGVE-GLKILKQVADEYGLAVISEIVNPADVEVALDY---VD-VIQIGARN--MQNF-ELLKAAG-RVNKPVLLKRGLS 235 (360)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh---CC-eEEECccc--ccCH-HHHHHHH-ccCCcEEEeCCCC
Confidence 44443 34456778889999999999988877766665 22 13333333 2343 3333322 2233666666666
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecC
Q 043137 358 GSVTESIEAVRMSKQAGW-GVMASH 381 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g~-~~~~~~ 381 (445)
.++.+++.++....+.|- ++++-|
T Consensus 236 ~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 236 ATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 667777777776666654 455544
No 139
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=54.98 E-value=1.3e+02 Score=29.94 Aligned_cols=72 Identities=10% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhccCCeeeEE--------CCC--------CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC
Q 043137 282 DALKDLYKSFISDYPIVSIE--------DPF--------DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK 345 (445)
Q Consensus 282 ~~ai~~~~~~l~~~~i~~iE--------dP~--------~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~ 345 (445)
++++++ .+.+++.++.+|. |-+ ++-|++...++++.++ ++||+|.-- +.+++++.+.+.
T Consensus 141 ~~~~~~-~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGd-I~s~~da~~~l~-- 215 (318)
T TIGR00742 141 EFLCDF-VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGG-IKNSEQIKQHLS-- 215 (318)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECC-cCCHHHHHHHHh--
Confidence 455555 4566777766653 222 1226777778888772 299855443 467999999885
Q ss_pred CCCEEEeccCCcc
Q 043137 346 TCNALLLKVNQIG 358 (445)
Q Consensus 346 a~d~v~ik~~~~G 358 (445)
.+|.|++-=.-.+
T Consensus 216 g~dgVMigRgal~ 228 (318)
T TIGR00742 216 HVDGVMVGREAYE 228 (318)
T ss_pred CCCEEEECHHHHh
Confidence 5888886544333
No 140
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.89 E-value=1.1e+02 Score=29.28 Aligned_cols=91 Identities=11% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHH
Q 043137 283 ALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~ 362 (445)
+-++.+.+..+++++.++=+|+.+++.+-..+ ..+ -+.|.+.+ +++.. +.+.+. +.--.|++|-++..++.+
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e---~vd-ilqIgs~~--~~n~~-LL~~va-~tgkPVilk~G~~~t~~e 137 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD---YLD-VIQVGARN--MQNFE-FLKTLS-HIDKPILFKRGLMATIEE 137 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh---cCC-EEEECccc--ccCHH-HHHHHH-ccCCeEEEeCCCCCCHHH
Confidence 35666788888999999999998777666554 232 13343333 24433 433332 234577888887778888
Q ss_pred HHHHHHHHHHcCC-cEEecC
Q 043137 363 SIEAVRMSKQAGW-GVMASH 381 (445)
Q Consensus 363 a~~ia~~A~~~g~-~~~~~~ 381 (445)
++.++....+.|. ++++-|
T Consensus 138 ~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 138 YLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred HHHHHHHHHHcCCCeEEEEc
Confidence 8888888777765 466666
No 141
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=54.74 E-value=1.4e+02 Score=28.65 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=33.6
Q ss_pred CCCCcCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 302 DPFDQDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 302 dP~~~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
+...--|++.++++++.++ +|| +++. +.+.+|+.++++...+|.+.+
T Consensus 178 G~~~G~d~~~i~~~~~~~~--ipvIasGG--v~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 178 GTMKGYDLELLKSFRNALK--IPLIALGG--AGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CCcCCCCHHHHHHHHhhCC--CCEEEeCC--CCCHHHHHHHHHHCCCCEEEE
Confidence 3444458999999999987 887 3333 457999999986556666643
No 142
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=54.39 E-value=23 Score=27.92 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=20.7
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCc
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGH 32 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~ 32 (445)
|+||+|+.+.| ++.|+---.|.|+.|+-+
T Consensus 1 m~iTdVRirkv-~~dgrmkA~vsvT~D~ef 29 (95)
T COG2088 1 MEITDVRIRKV-DTDGRMKAYVSVTLDNEF 29 (95)
T ss_pred CcceeEEEEEe-cCCCcEEEEEEEEecceE
Confidence 89999999998 444654456777766543
No 143
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.37 E-value=2e+02 Score=27.89 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHH
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVR 368 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~ 368 (445)
.++..+++++.++ +||++.-- +++++++.+++..+ +|.|++--.-..+..-..++.+
T Consensus 219 ~~~~i~~i~~~~~--ipii~~GG-I~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 219 ALRMVYQVYKAVE--IPIIGVGG-IASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred HHHHHHHHHHhcC--CCEEEECC-CCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHH
Confidence 3466677888776 99866544 46799999999988 6999987554445554555443
No 144
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=54.30 E-value=1.4e+02 Score=30.31 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc------HHHHHHHHHHHHHcCCcEEecC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS------VTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG------it~a~~ia~~A~~~g~~~~~~~ 381 (445)
.++..++|++..+ .||+.-+. .++++.+++++.+ +|+|.+. ..|| .....-+..+++..++++++.+
T Consensus 224 ~w~~i~~ir~~~~--~pviiKgV--~~~eda~~a~~~G-~d~I~VS--nhGGrqld~~~~~~~~L~ei~~~~~~~vi~dG 296 (361)
T cd04736 224 NWQDLRWLRDLWP--HKLLVKGI--VTAEDAKRCIELG-ADGVILS--NHGGRQLDDAIAPIEALAEIVAATYKPVLIDS 296 (361)
T ss_pred CHHHHHHHHHhCC--CCEEEecC--CCHHHHHHHHHCC-cCEEEEC--CCCcCCCcCCccHHHHHHHHHHHhCCeEEEeC
Confidence 5788999999998 88866664 4689999998865 6665543 2232 2234444455666788887655
Q ss_pred CCCCChhhHHHHHHhhhcCCccccCCCC-------CchhHHHHHHHHHHH
Q 043137 382 RSGETEDTFIADLSVGLATGQIKTGAPC-------RSERLAKYNQLLRIE 424 (445)
Q Consensus 382 ~~~et~~~~~~~la~a~~~~~~~~G~~~-------~~e~~~k~n~ll~i~ 424 (445)
. ..++.... =|+++|+..+.+|.|. +.+.+.++=++|+-|
T Consensus 297 G-Ir~g~Dv~--KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 297 G-IRRGSDIV--KALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred C-CCCHHHHH--HHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 22222211 2455567777776643 455666665555443
No 145
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=53.63 E-value=2.9e+02 Score=29.07 Aligned_cols=118 Identities=15% Similarity=0.277 Sum_probs=79.8
Q ss_pred CCccCHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhc--CC----
Q 043137 276 SQKISGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKE--KT---- 346 (445)
Q Consensus 276 ~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~--~a---- 346 (445)
+..++++|.+++ .+.+.++++.+||=-+| .+|++..+.+....+..+-|++=-. ....++++..+. ++
T Consensus 73 ga~~~~~qK~ei-ar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l~r--c~~~di~~tvEAl~~aKr~~ 149 (560)
T KOG2367|consen 73 GAFLTTEQKLEI-ARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTLIR--CHMDDIERTVEALKYAKRPR 149 (560)
T ss_pred CCcCCcHHHHHH-HHHHHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEeec--cchHHHHHHHHHhhccCcce
Confidence 456788999987 67788899999987665 3678888888887765455555432 346777776553 22
Q ss_pred CCEEE----------eccCCcccHHHHHHHHHHHHHcC-CcEEecC-CCCCChhhHHHHHHh
Q 043137 347 CNALL----------LKVNQIGSVTESIEAVRMSKQAG-WGVMASH-RSGETEDTFIADLSV 396 (445)
Q Consensus 347 ~d~v~----------ik~~~~GGit~a~~ia~~A~~~g-~~~~~~~-~~~et~~~~~~~la~ 396 (445)
++.+. .+-++--.|.-|.+..+++++.| +.+-.++ ..+.|+-.+++.+--
T Consensus 150 Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~~ 211 (560)
T KOG2367|consen 150 VHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEILG 211 (560)
T ss_pred EEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccCcHHHHHHHHH
Confidence 34443 23344556778888899999999 7777776 344566566666533
No 146
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.36 E-value=2.5e+02 Score=28.14 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=78.2
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--------------CCCcCCHHHHHHHHHHhCCCceE--EeCcccccCHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--------------PFDQDDWEHYAKLTSEVGEKVQI--VGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--------------P~~~~D~~~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~ 340 (445)
-.++.++.+++ .+.+++.++..||= |....|++..+++++..+ +..+ +..-. ..+.++++.
T Consensus 19 ~~f~~~~~~~i-a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg-~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAI-AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPG-IGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHH-HHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccC-ccCHHHHHH
Confidence 45788888887 56688899999998 444567888888887754 3443 22111 124788887
Q ss_pred HHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHH---HHHhhhcCCcccc
Q 043137 341 AIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR-SGETEDTFIA---DLSVGLATGQIKT 405 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~-~~et~~~~~~---~la~a~~~~~~~~ 405 (445)
..+. .+|.|.+-... .=.-.+.+.+.+|++.|..+.+.-+ +........+ ..+...++..+.+
T Consensus 96 a~~~-gvd~iri~~~~-~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 96 AYDA-GARTVRVATHC-TEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred HHHC-CCCEEEEEecc-chHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 7766 47888866532 2245678999999999998754332 2223333334 3344446655553
No 147
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=53.35 E-value=54 Score=34.36 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhcc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-----
Q 043137 282 DALKDLYKSFISD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----- 355 (445)
Q Consensus 282 ~~ai~~~~~~l~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~----- 355 (445)
.++++++.+++-+ -+..++|+|....-+..+..+..+. +||--|+.- -+++.+.+.+......++-+-++
T Consensus 165 q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~---~~vp~d~~G-~~~e~le~~~~~~~~k~~y~~P~~qNPt 240 (459)
T COG1167 165 QQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARV---IPVPVDEDG-IDPEALEEALAQWKPKAVYVTPTFQNPT 240 (459)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcE---EecCCCCCC-CCHHHHHHHHhhcCCcEEEECCCCCCCC
Confidence 5788887777765 4588999998754333333222222 455344443 36899999988776666665553
Q ss_pred -CcccHHHHHHHHHHHHHcCCcEE
Q 043137 356 -QIGSVTESIEAVRMSKQAGWGVM 378 (445)
Q Consensus 356 -~~GGit~a~~ia~~A~~~g~~~~ 378 (445)
-+=....-++++++|+++++-++
T Consensus 241 G~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 241 GVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEE
Confidence 23456677889999999999973
No 148
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=53.08 E-value=1.2e+02 Score=29.54 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=56.5
Q ss_pred CccCHHHHHHHHHHhhcc-CCeeeE--------ECCCCcCCHHHH-------HHHHHHhCCCceEEeCcccccCHHHHHH
Q 043137 277 QKISGDALKDLYKSFISD-YPIVSI--------EDPFDQDDWEHY-------AKLTSEVGEKVQIVGDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~-~~i~~i--------EdP~~~~D~~~~-------~~L~~~~~~~vpI~gde~~~~~~~~~~~ 340 (445)
...+.+++++...+++++ ..+.=| -+|++++ +.+ +.|++..+ +||+-|-. +++-++.
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~e--eE~~Rv~pvI~~l~~~~~--~~ISIDT~---~~~va~~ 105 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVE--EELDRVIPVVEAIAQRFE--VWISVDTS---KPEVIRE 105 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHH--HHHHHHHHHHHHHHhcCC--CeEEEECC---CHHHHHH
Confidence 345677888876666654 222211 1234332 233 44444445 99999953 4788888
Q ss_pred HHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 341 AIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
.++.+ +|+|| |+ .|+++ -+++..+..+|..+++-|+.
T Consensus 106 AL~~G-adiIN-DI---~g~~d-~~~~~~~a~~~~~vVlmh~~ 142 (282)
T PRK11613 106 SAKAG-AHIIN-DI---RSLSE-PGALEAAAETGLPVCLMHMQ 142 (282)
T ss_pred HHHcC-CCEEE-EC---CCCCC-HHHHHHHHHcCCCEEEEcCC
Confidence 88875 77765 22 23432 25566678889999888863
No 149
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.00 E-value=1.2e+02 Score=30.88 Aligned_cols=94 Identities=11% Similarity=0.185 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC---------cc-c---HHHHHHHHHHHHHc-
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ---------IG-S---VTESIEAVRMSKQA- 373 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~---------~G-G---it~a~~ia~~A~~~- 373 (445)
++..+.++.++.+ +||++.. +.+.++++++++ -.+|+|.+-..- .| | ++...+.++.++.+
T Consensus 175 ~~~~i~~~ik~~~--ipVIaG~--V~t~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l 249 (368)
T PRK08649 175 EPLNLKEFIYELD--VPVIVGG--CVTYTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYL 249 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEeC--CCCHHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhh
Confidence 6788888888877 9987644 346899999997 668888654221 11 1 22333444434433
Q ss_pred ------CCcEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 374 ------GWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 374 ------g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+++++.......+. .... |+++++..+.+|.+.
T Consensus 250 ~~~~~~~vpVIAdGGI~~~~-diak--AlalGAd~Vm~Gs~f 288 (368)
T PRK08649 250 DETGGRYVHVIADGGIGTSG-DIAK--AIACGADAVMLGSPL 288 (368)
T ss_pred hhhcCCCCeEEEeCCCCCHH-HHHH--HHHcCCCeecccchh
Confidence 68876655322222 2222 334568888888754
No 150
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.13 E-value=2.4e+02 Score=27.58 Aligned_cols=124 Identities=22% Similarity=0.168 Sum_probs=73.0
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECC-------CC--cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDP-------FD--QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP-------~~--~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~ 347 (445)
..++.++-+++ .+.+.+.++..||=- +| .+..+..+.|.+..+ +.+.+ + +.+..++++.++.+ .
T Consensus 21 ~~~s~e~k~~i-a~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~--~~~~~--l-~~~~~~ie~A~~~g-~ 93 (287)
T PRK05692 21 RFIPTADKIAL-IDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPG--VTYAA--L-TPNLKGLEAALAAG-A 93 (287)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCC--CeEEE--E-ecCHHHHHHHHHcC-C
Confidence 45788888876 566888999999942 32 344566666654322 44432 2 34688998887763 4
Q ss_pred CEEEeccCCc---------c----cHHHHHHHHHHHHHcCCcEE------ecCC-CCCChhhHHH---HHHhhhcCCccc
Q 043137 348 NALLLKVNQI---------G----SVTESIEAVRMSKQAGWGVM------ASHR-SGETEDTFIA---DLSVGLATGQIK 404 (445)
Q Consensus 348 d~v~ik~~~~---------G----Git~a~~ia~~A~~~g~~~~------~~~~-~~et~~~~~~---~la~a~~~~~~~ 404 (445)
|.+.+-++-. - -+..+.+++++|+++|+.+. +++- .+.+.....+ .-+...++..+.
T Consensus 94 ~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 173 (287)
T PRK05692 94 DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEIS 173 (287)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 6665543211 1 23347789999999999864 2221 1123333333 334555677666
Q ss_pred cCC
Q 043137 405 TGA 407 (445)
Q Consensus 405 ~G~ 407 (445)
+-+
T Consensus 174 l~D 176 (287)
T PRK05692 174 LGD 176 (287)
T ss_pred ecc
Confidence 444
No 151
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=52.07 E-value=84 Score=33.25 Aligned_cols=108 Identities=11% Similarity=0.207 Sum_probs=63.2
Q ss_pred CCeeeEECCC--CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------C----c--cc
Q 043137 295 YPIVSIEDPF--DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q----I--GS 359 (445)
Q Consensus 295 ~~i~~iEdP~--~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------~----~--GG 359 (445)
.++..+..+- ...-++..++|+++.+ ++||+.... .+.++.+.+++.++ |+|.+-.+ + + ..
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p-~~~vi~g~v--~t~e~a~~l~~aGa-d~i~vg~g~gs~~~~r~~~~~g~p~ 316 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYP-DVQIIAGNV--ATAEAARALIEAGA-DAVKVGIGPGSICTTRIVAGVGVPQ 316 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCC-CCCEEEecc--CCHHHHHHHHHcCC-CEEEECCCCCccccceeecCCCcCH
Confidence 4455555442 2233456778888873 288755443 45899999988754 77754221 1 1 23
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 360 it~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
++-..++++.|+..+++++..+.. -+.. -+--|+++++..+.+|++.
T Consensus 317 ~~~~~~~~~~~~~~~~~viadGGi-~~~~--di~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 317 ITAIADAAEAAKKYGIPVIADGGI-RYSG--DIAKALAAGASAVMLGSML 363 (486)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCC-CCHH--HHHHHHHhCCCEEEECccc
Confidence 556667777777789998664422 2221 1223455578888888743
No 152
>PRK08185 hypothetical protein; Provisional
Probab=50.86 E-value=1.9e+02 Score=28.24 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=48.2
Q ss_pred cccCHHHHHHHHhcCCCCEEEeccCCcccHHH--------HHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCc
Q 043137 331 LVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE--------SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQ 402 (445)
Q Consensus 331 ~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~--------a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~ 402 (445)
.+|++++..++.+.-.+|++-+-++.++|+.. .-.+..+.+..++++++.+.++-+ +.. ..-|+..|..=
T Consensus 147 ~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~-~e~-~~~ai~~GI~K 224 (283)
T PRK08185 147 IYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANP-DAE-IAESVQLGVGK 224 (283)
T ss_pred cCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCC-HHH-HHHHHHCCCeE
Confidence 36889999999998789999997777776642 334455566669998665544333 332 23334445555
Q ss_pred cccCC
Q 043137 403 IKTGA 407 (445)
Q Consensus 403 ~~~G~ 407 (445)
++.+.
T Consensus 225 iNi~T 229 (283)
T PRK08185 225 INISS 229 (283)
T ss_pred EEeCh
Confidence 55544
No 153
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=50.35 E-value=2.2e+02 Score=29.52 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=77.1
Q ss_pred CCccCHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCC--CceEEeCcccccCHHHHHHHHhcCCCCE-
Q 043137 276 SQKISGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGE--KVQIVGDDLLVTNPKRVEKAIKEKTCNA- 349 (445)
Q Consensus 276 ~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~--~vpI~gde~~~~~~~~~~~~i~~~a~d~- 349 (445)
+..+|.++-++. .+.|++.++.+||=-+| +.|++..+.+....+. .+.+.+-.. ....++..+++.+.--+
T Consensus 18 g~~~s~e~Ki~I-a~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ea~~~a~~~~i~ 94 (409)
T COG0119 18 GVSFSVEEKIRI-AKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALAR--AIKRDIEALLEAGVDRIH 94 (409)
T ss_pred CCcCCHHHHHHH-HHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHH--hHHhhHHHHHhCCCCEEE
Confidence 456788998886 67789999999997776 4577777777754331 112222221 12335666665443322
Q ss_pred -EE----------eccCCcccHHHHHHHHHHHHHcCCcEEecC-CCCCChhhHHHHH---HhhhcCCccccCCC
Q 043137 350 -LL----------LKVNQIGSVTESIEAVRMSKQAGWGVMASH-RSGETEDTFIADL---SVGLATGQIKTGAP 408 (445)
Q Consensus 350 -v~----------ik~~~~GGit~a~~ia~~A~~~g~~~~~~~-~~~et~~~~~~~l---a~a~~~~~~~~G~~ 408 (445)
+. ++.++.--+.-+.+.+.+|+.+|+.+..+. ....++..+++.+ +...++..+.+++-
T Consensus 95 if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DT 168 (409)
T COG0119 95 IFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDT 168 (409)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCC
Confidence 11 223345566677788889999999886433 1234555544443 33344677776553
No 154
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=50.33 E-value=2.6e+02 Score=27.42 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecCC
Q 043137 312 YAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASHR 382 (445)
Q Consensus 312 ~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~~ 382 (445)
.+.+.++.+ +|| -.|.. .+.+.+.+.++.+ ++.|++|-+..- -+..+++++++|+++|+.+ .+||-
T Consensus 66 ~~~~A~~~~--vPV~lHLDH~--~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 66 VKRHADKMD--VPVSLHLDHG--KTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHHHCC--CCEEEECcCC--CCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 344555666 665 56653 4688999999886 689999988753 2567899999999999876 67774
No 155
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=49.95 E-value=1.7e+02 Score=27.31 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
-|++.++++++.++ +||++.-- +++++++.+.+....+|.|.+
T Consensus 184 ~~~~~~~~i~~~~~--ipvia~GG-i~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 184 YDLELIKTVSDAVS--IPVIALGG-AGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHHcCCCEEEE
Confidence 46888999999887 88733322 357999999666667777664
No 156
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.80 E-value=1.5e+02 Score=29.11 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc--CCcEEecCCCCCCh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA--GWGVMASHRSGETE 387 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~--g~~~~~~~~~~et~ 387 (445)
+..+++++..+....| +=| +.+.+++.+.++. .+|++++|.. ++.+.++++.+.+.. .+.+..+ |...
T Consensus 184 ~av~~~r~~~~~~~~I-~VE--v~tleea~eA~~~-GaD~I~LDn~---~~e~l~~av~~~~~~~~~i~leAs---GGIt 253 (288)
T PRK07428 184 EAITRIRQRIPYPLTI-EVE--TETLEQVQEALEY-GADIIMLDNM---PVDLMQQAVQLIRQQNPRVKIEAS---GNIT 253 (288)
T ss_pred HHHHHHHHhCCCCCEE-EEE--CCCHHHHHHHHHc-CCCEEEECCC---CHHHHHHHHHHHHhcCCCeEEEEE---CCCC
Confidence 5667777776522333 333 3568999888854 4699999954 567777777766643 3444333 3334
Q ss_pred hhHHHHHHhhhcCCccccCCCC
Q 043137 388 DTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 388 ~~~~~~la~a~~~~~~~~G~~~ 409 (445)
...+..+| +.++.++-.|.+.
T Consensus 254 ~~ni~~ya-~tGvD~Isvgsl~ 274 (288)
T PRK07428 254 LETIRAVA-ETGVDYISSSAPI 274 (288)
T ss_pred HHHHHHHH-HcCCCEEEEchhh
Confidence 44555665 3477777776653
No 157
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.59 E-value=2.2e+02 Score=26.18 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=49.4
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
...+++.++.+++... +||..... ..++++++.+.+.+ +|.+.+...-.. ...+.++...+...|+.+++..
T Consensus 57 ~~g~~~~~~~i~~~v~--iPi~~~~~-i~~~~~v~~~~~~G-ad~v~l~~~~~~-~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 57 FQGSLEDLRAVREAVS--LPVLRKDF-IIDPYQIYEARAAG-ADAVLLIVAALD-DEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred cCCCHHHHHHHHHhcC--CCEEECCe-ecCHHHHHHHHHcC-CCEEEEeeccCC-HHHHHHHHHHHHHcCCeEEEEE
Confidence 3467888999999887 99854444 45666777776665 566665443332 3677778888888898876554
No 158
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=48.48 E-value=38 Score=32.29 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEEeccC-CcccHHHHHHHHHHHHHcCCcE
Q 043137 307 DDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLKVN-QIGSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-~~GGit~a~~ia~~A~~~g~~~ 377 (445)
-|++.++++++.++ +|| +.+. +++++++.++++...+|.+.+--. ..|. ....++.+.++++|+.+
T Consensus 184 ~d~~~i~~~~~~~~--ipvia~GG--v~s~~d~~~~~~~~G~~gvivg~al~~~~-~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 184 YDLELTRAVSDAVN--VPVIASGG--AGNLEHFVEAFTEGGADAALAASIFHFGE-ITIGELKAYLAEQGIPV 251 (253)
T ss_pred cCHHHHHHHHhhCC--CCEEEECC--CCCHHHHHHHHHhCCccEEeEhHHHHcCC-CCHHHHHHHHHHCCCcc
Confidence 37889999999987 887 3332 356899999988766777666432 2233 33445566667788764
No 159
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=48.23 E-value=67 Score=32.52 Aligned_cols=93 Identities=10% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc------HHHHHHHHHHHHHc--CCcEE
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS------VTESIEAVRMSKQA--GWGVM 378 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG------it~a~~ia~~A~~~--g~~~~ 378 (445)
.+|+.+++|+++++ +||+--|. .++++++++.+.+ +|+| +++..|| ++.+.-+..+.++. .++++
T Consensus 212 ~~w~~i~~~~~~~~--~pvivKgv--~~~~da~~~~~~G-~~~i--~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~ 284 (356)
T PF01070_consen 212 LTWDDIEWIRKQWK--LPVIVKGV--LSPEDAKRAVDAG-VDGI--DVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPII 284 (356)
T ss_dssp -SHHHHHHHHHHCS--SEEEEEEE---SHHHHHHHHHTT--SEE--EEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEE
T ss_pred CCHHHHHHHhcccC--CceEEEec--ccHHHHHHHHhcC-CCEE--EecCCCcccCccccccccccHHHHhhhcCCeeEE
Confidence 47788999999998 99988886 3589999998766 4443 3444444 66666666665545 48887
Q ss_pred ecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 379 ASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 379 ~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+.+. .-++...+- |+++|+..+-.|.|.
T Consensus 285 ~dgG-ir~g~Dv~k--alaLGA~~v~igr~~ 312 (356)
T PF01070_consen 285 ADGG-IRRGLDVAK--ALALGADAVGIGRPF 312 (356)
T ss_dssp EESS---SHHHHHH--HHHTT-SEEEESHHH
T ss_pred EeCC-CCCHHHHHH--HHHcCCCeEEEccHH
Confidence 7662 344333333 344467766666543
No 160
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=48.22 E-value=1.5e+02 Score=30.37 Aligned_cols=92 Identities=9% Similarity=0.197 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc------HHHHHHHHHHHHHc--CCcEEe
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS------VTESIEAVRMSKQA--GWGVMA 379 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG------it~a~~ia~~A~~~--g~~~~~ 379 (445)
+|+.+++|++..+ +||+..+. .+.++++++++.+ +|+|.+. ..|| ++.+.-+..++++. ++++++
T Consensus 233 tW~di~~lr~~~~--~pvivKgV--~s~~dA~~a~~~G-vd~I~Vs--~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~ 305 (381)
T PRK11197 233 SWKDLEWIRDFWD--GPMVIKGI--LDPEDARDAVRFG-ADGIVVS--NHGGRQLDGVLSSARALPAIADAVKGDITILA 305 (381)
T ss_pred CHHHHHHHHHhCC--CCEEEEec--CCHHHHHHHHhCC-CCEEEEC--CCCCCCCCCcccHHHHHHHHHHHhcCCCeEEe
Confidence 6788999999998 99988875 4689999988765 5665543 3344 12222223334443 588766
Q ss_pred cCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 380 SHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
.+. .-++....- |+++|+..+.+|.|.
T Consensus 306 dGG-Ir~g~Di~K--ALaLGA~~V~iGr~~ 332 (381)
T PRK11197 306 DSG-IRNGLDVVR--MIALGADTVLLGRAF 332 (381)
T ss_pred eCC-cCcHHHHHH--HHHcCcCceeEhHHH
Confidence 552 222222222 445567777776643
No 161
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.91 E-value=1.3e+02 Score=30.03 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=49.9
Q ss_pred HHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc---HH-----------HHHHHHHHHHHcCCcE
Q 043137 312 YAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS---VT-----------ESIEAVRMSKQAGWGV 377 (445)
Q Consensus 312 ~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG---it-----------~a~~ia~~A~~~g~~~ 377 (445)
.++++++.+ .+||+..+. .++++++.+++.+ +|++.+- -.|| +| ..--+..++++..+++
T Consensus 131 I~~ir~~~p-~~~vi~g~V--~t~e~a~~l~~aG-ad~i~vg--~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipV 204 (326)
T PRK05458 131 IQHIKKHLP-ETFVIAGNV--GTPEAVRELENAG-ADATKVG--IGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPI 204 (326)
T ss_pred HHHHHhhCC-CCeEEEEec--CCHHHHHHHHHcC-cCEEEEC--CCCCcccccccccCCCCCccHHHHHHHHHHHcCCCE
Confidence 677887775 388877764 4689998888765 6775422 1122 11 1112444455567887
Q ss_pred EecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 378 MASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 378 ~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+..+. ..+..... -|+++++..+..|++.
T Consensus 205 IAdGG-I~~~~Di~--KaLa~GA~aV~vG~~~ 233 (326)
T PRK05458 205 IADGG-IRTHGDIA--KSIRFGATMVMIGSLF 233 (326)
T ss_pred EEeCC-CCCHHHHH--HHHHhCCCEEEechhh
Confidence 55442 23322222 2344467777777644
No 162
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=47.39 E-value=2.3e+02 Score=26.55 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
-+++..+++++.++ +|+++.-- +++++++.++++...+|.+.+-
T Consensus 180 ~~~~~i~~i~~~~~--~pvia~GG-i~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 180 YDLELIRAVSSAVN--IPVIASGG-AGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred CCHHHHHHHHhhCC--CCEEEeCC-CCCHHHHHHHHHhCCCCEEEEe
Confidence 47888999999887 88733322 3569999999998778877763
No 163
>PLN02535 glycolate oxidase
Probab=47.24 E-value=2.7e+02 Score=28.38 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC---C-cccHHHHHHHHHHHHHc--CCcEEec
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---Q-IGSVTESIEAVRMSKQA--GWGVMAS 380 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~---~-~GGit~a~~ia~~A~~~--g~~~~~~ 380 (445)
-+|+..++|++..+ +||+..+. .++++.+.+++.+ +|+|.+.-. + -+++....-+.++.++. .++++..
T Consensus 210 ~tW~~i~~lr~~~~--~PvivKgV--~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 210 LSWKDIEWLRSITN--LPILIKGV--LTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred CCHHHHHHHHhccC--CCEEEecC--CCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee
Confidence 47888999999888 99977775 3589888877654 666654310 1 12343344444444443 5887655
Q ss_pred CCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 381 HRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+. ..+.....- |+++|+..+.+|.|.
T Consensus 285 GG-Ir~g~Dv~K--ALalGA~aV~vGr~~ 310 (364)
T PLN02535 285 GG-VRRGTDVFK--ALALGAQAVLVGRPV 310 (364)
T ss_pred CC-CCCHHHHHH--HHHcCCCEEEECHHH
Confidence 42 233333333 444567777776643
No 164
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.01 E-value=1.6e+02 Score=28.91 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
.+.+++++++.++ .+|.-+ +.+.+++...++.+ +|+|++|-+. +.+.++++.+.++.+-++.+-- +|....
T Consensus 187 ~~ai~~~r~~~~~-~kIeVE---v~tl~ea~eal~~g-aDiI~LDnm~---~e~vk~av~~~~~~~~~v~iea-SGGI~~ 257 (289)
T PRK07896 187 VAALRAVRAAAPD-LPCEVE---VDSLEQLDEVLAEG-AELVLLDNFP---VWQTQEAVQRRDARAPTVLLES-SGGLTL 257 (289)
T ss_pred HHHHHHHHHhCCC-CCEEEE---cCCHHHHHHHHHcC-CCEEEeCCCC---HHHHHHHHHHHhccCCCEEEEE-ECCCCH
Confidence 3677888877653 444332 35688898888765 5999999554 7788888877665544443333 344444
Q ss_pred hHHHHHHhhhcCCccccCCCC
Q 043137 389 TFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~ 409 (445)
..+.++|- ++..++..|.+.
T Consensus 258 ~ni~~yA~-tGvD~Is~galt 277 (289)
T PRK07896 258 DTAAAYAE-TGVDYLAVGALT 277 (289)
T ss_pred HHHHHHHh-cCCCEEEeChhh
Confidence 55566654 477888877765
No 165
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=46.39 E-value=1.7e+02 Score=28.93 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEecc--cccccc------------CCc-eeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVA--ASEFYG------------SDK-TYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~--a~~~~~------------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
.-++.++|+++.++|+. ++.||-=.+ ++.+|. .++ .|+.+. -+..||++....-
T Consensus 174 DGrV~aIR~aLd~ag~~-~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDp----------aN~~EAlrE~~lD 242 (330)
T COG0113 174 DGRVGAIREALDEAGFI-DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDP----------ANRREALREIELD 242 (330)
T ss_pred cchHHHHHHHHHHcCCC-cceeeehhHHHhhhccccHHHHhhcccccCCcceeccCC----------cCHHHHHHHHHhh
Confidence 35788899999999874 777764221 223331 112 677652 2456777654332
Q ss_pred hcc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 292 ISD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 292 l~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
+++ .++.++---++. ++-.+++++.++ +|+++-..+ .-..=++....+++.|- =+-.++...--
T Consensus 243 ~~EGAD~lMVKPal~Y--LDIi~~vk~~~~--lP~~AYqVS-GEYaMikAAa~nGwide----------~~~vlEsL~~~ 307 (330)
T COG0113 243 IEEGADILMVKPALPY--LDIIRRVKEEFN--LPVAAYQVS-GEYAMIKAAAQNGWIDE----------EKVVLESLTSI 307 (330)
T ss_pred HhcCCcEEEEcCCchH--HHHHHHHHHhcC--CCeEEEecc-hHHHHHHHHHHcCCcch----------HHHHHHHHHHH
Confidence 333 557777655654 557889999998 999887643 22333445566666553 12334444444
Q ss_pred HHcCCcEEe
Q 043137 371 KQAGWGVMA 379 (445)
Q Consensus 371 ~~~g~~~~~ 379 (445)
+.+|-..++
T Consensus 308 kRAGAd~Ii 316 (330)
T COG0113 308 KRAGADLII 316 (330)
T ss_pred HhcCCCEEE
Confidence 556666554
No 166
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=45.33 E-value=3.8e+02 Score=28.75 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=71.4
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CC-CcCCHHHHHHHHHHhCCCceEEeCc------ccccCHHHHHHHHhcCCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PF-DQDDWEHYAKLTSEVGEKVQIVGDD------LLVTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~vpI~gde------~~~~~~~~~~~~i~~~a~ 347 (445)
..++.++-+++ .+.|++.++.+||= |. .+.|++.++++.+.-..+..|++== ..+.+...+..+++. ..
T Consensus 18 ~~~s~eeKl~I-a~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~-~~ 95 (526)
T TIGR00977 18 VSFSLEDKIRI-AERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKA-ET 95 (526)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcC-CC
Confidence 46788998887 56789999999997 54 4678888888875321124443311 000112234444433 34
Q ss_pred CEEEec-----------c--CCcccHHHHHHHHHHHHHcCCcEEecCC---CC-CChhhHHHHH---HhhhcCCcccc
Q 043137 348 NALLLK-----------V--NQIGSVTESIEAVRMSKQAGWGVMASHR---SG-ETEDTFIADL---SVGLATGQIKT 405 (445)
Q Consensus 348 d~v~ik-----------~--~~~GGit~a~~ia~~A~~~g~~~~~~~~---~~-et~~~~~~~l---a~a~~~~~~~~ 405 (445)
+.+.+= + ++---+..+.+++.+|+.+|..+.++.. .+ .+...+...+ +...++..+.+
T Consensus 96 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i 173 (526)
T TIGR00977 96 PVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVL 173 (526)
T ss_pred CEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 445541 1 2223344455668899999999765443 11 2344444444 34445666553
No 167
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=44.54 E-value=2.5e+02 Score=28.66 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC---Cc-ccHHHHHHHHHHHHHc--CCcEEec
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN---QI-GSVTESIEAVRMSKQA--GWGVMAS 380 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~---~~-GGit~a~~ia~~A~~~--g~~~~~~ 380 (445)
-+|+.+++|++..+ +||+..+. .++++++++++.+ +|.|.+.-. +. ++++.+.-+..++++. .+++++.
T Consensus 211 ~tW~di~wlr~~~~--~PiivKgV--~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d 285 (367)
T PLN02493 211 LSWKDVQWLQTITK--LPILVKGV--LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 285 (367)
T ss_pred CCHHHHHHHHhccC--CCEEeecC--CCHHHHHHHHHcC-CCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 47889999999998 99988886 3589999988776 555544432 11 1222333333344443 3777665
Q ss_pred CCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 381 HRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 381 ~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+. .-++...+- |+++|+..+-.|.|.
T Consensus 286 GG-Ir~G~Dv~K--ALALGA~aV~iGr~~ 311 (367)
T PLN02493 286 GG-VRRGTDVFK--ALALGASGIFIGRPV 311 (367)
T ss_pred CC-cCcHHHHHH--HHHcCCCEEEEcHHH
Confidence 52 233322223 444567777766643
No 168
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.33 E-value=3e+02 Score=26.56 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=77.7
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCC-----------CcCCHHHHHHHHHHhCCCceEEeCccc---cc--------CH
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPF-----------DQDDWEHYAKLTSEVGEKVQIVGDDLL---VT--------NP 335 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~-----------~~~D~~~~~~L~~~~~~~vpI~gde~~---~~--------~~ 335 (445)
.++.+|.++. .+.+++.++.+||=-. ..++++.++.+++..+ ++++.+=-.. .. ..
T Consensus 17 ~~~~~~~~~i-a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~-~~~l~~~~r~~~~~~~~~~p~~~~~ 94 (275)
T cd07937 17 RMRTEDMLPI-AEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMP-NTPLQMLLRGQNLVGYRHYPDDVVE 94 (275)
T ss_pred eccHHHHHHH-HHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCC-CCceehhcccccccCccCCCcHHHH
Confidence 4677888876 6678889999999754 4567777888887654 3555321100 00 23
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC---CCCChhhHHHH---HHhhhcCCccccCCCC
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR---SGETEDTFIAD---LSVGLATGQIKTGAPC 409 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~---~~et~~~~~~~---la~a~~~~~~~~G~~~ 409 (445)
.+++... ....|.|.+-.... =+..+++.+++|+..|+.+.+.=+ ...+....... .+...++..+.+.+..
T Consensus 95 ~di~~~~-~~g~~~iri~~~~~-~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~ 172 (275)
T cd07937 95 LFVEKAA-KNGIDIFRIFDALN-DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMA 172 (275)
T ss_pred HHHHHHH-HcCCCEEEEeecCC-hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4444444 33468777754332 378899999999999988654211 12333444343 3455567777755544
No 169
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=44.05 E-value=1.7e+02 Score=28.20 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=63.8
Q ss_pred ccCHHHHHHHHHHhhccCC---eeeE-ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 278 KISGDALKDLYKSFISDYP---IVSI-EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~---i~~i-EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.+..+.| ++++ |..+ |+++-...++.++.+++.++ +||.-.++. -++.++...-.. .+|+|.+=
T Consensus 67 ~~d~~~~a~~y----~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~--~PvL~KDFI-id~~QI~eA~~~-GADaVLLI 138 (254)
T PF00218_consen 67 DFDPAEIAKAY----EEAGAAAISVLTEPKFFGGSLEDLRAVRKAVD--LPVLRKDFI-IDPYQIYEARAA-GADAVLLI 138 (254)
T ss_dssp S-SHHHHHHHH----HHTT-SEEEEE--SCCCHHHHHHHHHHHHHSS--S-EEEES----SHHHHHHHHHT-T-SEEEEE
T ss_pred cCCHHHHHHHH----HhcCCCEEEEECCCCCCCCCHHHHHHHHHHhC--CCcccccCC-CCHHHHHHHHHc-CCCEeehh
Confidence 45666655444 3443 5544 66677788999999999998 999888875 457777766544 56888877
Q ss_pred cCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 354 ~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+.-.+ -....++..+|+..|+.+.+--
T Consensus 139 ~~~L~-~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 139 AAILS-DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp GGGSG-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHhCC-HHHHHHHHHHHHHcCCCeEEEE
Confidence 77664 3667899999999999987754
No 170
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=43.79 E-value=77 Score=28.53 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=43.1
Q ss_pred HHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCC
Q 043137 289 KSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 289 ~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
.+.+++..+.++| =+|-==..-.+++.++++ .||+++-+ +.+.+++...+..++.-
T Consensus 114 ~~~i~~~~pD~iE-vLPGv~Pkvi~~i~~~t~--~piIAGGL-i~t~Eev~~Al~aGA~a 169 (181)
T COG1954 114 IKQIEKSEPDFIE-VLPGVMPKVIKEITEKTH--IPIIAGGL-IETEEEVREALKAGAVA 169 (181)
T ss_pred HHHHHHcCCCEEE-EcCcccHHHHHHHHHhcC--CCEEeccc-cccHHHHHHHHHhCcEE
Confidence 3456667788888 555555678899999998 99977766 46689999999888754
No 171
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.35 E-value=2.4e+02 Score=26.17 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=31.5
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
..-|++.++++++.++ +||++.-- +.+++++.++++. .+|.+.+
T Consensus 175 ~g~~~~~i~~i~~~~~--ipvi~~GG-i~~~~di~~~~~~-Ga~gv~v 218 (234)
T cd04732 175 SGPNFELYKELAAATG--IPVIASGG-VSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred CCCCHHHHHHHHHhcC--CCEEEecC-CCCHHHHHHHHHC-CCCEEEE
Confidence 3357899999999987 88733322 3568999999886 4666554
No 172
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=43.29 E-value=49 Score=32.98 Aligned_cols=57 Identities=9% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHH
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIE 365 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ 365 (445)
-|++..++|++.++. +||++... +.++++.++.++...+|.|++-=.-.|-..=+.+
T Consensus 184 ad~~~I~~vk~~~~~-ipvi~NGd-I~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~ 240 (323)
T COG0042 184 ADWDYIKELKEAVPS-IPVIANGD-IKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQ 240 (323)
T ss_pred cCHHHHHHHHHhCCC-CeEEeCCC-cCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHH
Confidence 589999999999975 89977775 5679999999999999999976443333333333
No 173
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=42.08 E-value=2.4e+02 Score=26.67 Aligned_cols=49 Identities=4% Similarity=0.111 Sum_probs=33.9
Q ss_pred ECCCCcCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhc--CCCCEEEec
Q 043137 301 EDPFDQDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKE--KTCNALLLK 353 (445)
Q Consensus 301 EdP~~~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~--~a~d~v~ik 353 (445)
++....-|++.++++++.++ +|| +++. +++++|+.++... ..+|.+.+-
T Consensus 171 ~g~~~G~d~~~i~~i~~~~~--ipviasGG--i~s~~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 171 DGTLTGPNLELLREVCARTD--APVVASGG--VSSLDDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred CCCccCCCHHHHHHHHhhCC--CCEEEeCC--CCCHHHHHHHhhhccCCccEEEEe
Confidence 33444458999999999987 887 3333 3579999988643 457776654
No 174
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.43 E-value=3.8e+02 Score=26.85 Aligned_cols=126 Identities=10% Similarity=0.025 Sum_probs=78.6
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC-------------C-CCcCCHHHHHHHHHHhCCCceEE--eCcccccCHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED-------------P-FDQDDWEHYAKLTSEVGEKVQIV--GDDLLVTNPKRVEK 340 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd-------------P-~~~~D~~~~~~L~~~~~~~vpI~--gde~~~~~~~~~~~ 340 (445)
..++.++.+++ .+.+++.++..||= - ....|.+.++.+++..+ +..+. ..=. ..+.++++.
T Consensus 20 ~~f~~~~~~~i-~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg-~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRAI-ARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK-QAKIAALLLPG-IGTVDDLKM 96 (337)
T ss_pred CccCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC-CCEEEEEeccC-cccHHHHHH
Confidence 46788888887 56688899999997 2 22346777788876653 34543 2211 124788887
Q ss_pred HHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHH---HHHhhhcCCccccCC
Q 043137 341 AIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR-SGETEDTFIA---DLSVGLATGQIKTGA 407 (445)
Q Consensus 341 ~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~-~~et~~~~~~---~la~a~~~~~~~~G~ 407 (445)
..+.+ +|.+.+-.. +.=...+++.+..|++.|+.+.+.-+ .........+ ..+...++..+.+-+
T Consensus 97 a~~~g-vd~iri~~~-~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~D 165 (337)
T PRK08195 97 AYDAG-VRVVRVATH-CTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVD 165 (337)
T ss_pred HHHcC-CCEEEEEEe-cchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 77664 688776542 22346788999999999998755432 2233344334 344445666655433
No 175
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=40.74 E-value=59 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=18.3
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCC
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDG 31 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G 31 (445)
|+||+|+.+.+... |+---++.|+.|+-
T Consensus 1 M~ITdVri~~~~~~-g~lka~asit~dd~ 28 (94)
T PRK13259 1 MEVTDVRLRKVNTE-GRMKAIVSITFDNE 28 (94)
T ss_pred CeEEEEEEEEeCCC-CcEEEEEEEEECCE
Confidence 89999999998533 43223456655553
No 176
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=40.17 E-value=1.1e+02 Score=29.87 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=47.7
Q ss_pred HHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 043137 313 AKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 313 ~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~---GGit~a~~ia~~A~~~g~~~--~~~~ 381 (445)
..++++.+ +|| -.|.. .+.+.+.+.++.+ ++.|++|-+.. --|..+++++++|++.|+.+ -+||
T Consensus 62 ~~~a~~~~--VPV~lHLDH~--~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~ 132 (276)
T cd00947 62 KAAAERAS--VPVALHLDHG--SSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGR 132 (276)
T ss_pred HHHHHHCC--CCEEEECCCC--CCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 34455555 665 56763 5789999999887 89999998864 23667899999999999876 4555
No 177
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=40.16 E-value=5e+02 Score=27.83 Aligned_cols=129 Identities=9% Similarity=0.063 Sum_probs=76.0
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEEC--CC-CcCCHHHHHHHHHHhCCCceEEeCccc------ccCHHHHHHHHhcCCC
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIED--PF-DQDDWEHYAKLTSEVGEKVQIVGDDLL------VTNPKRVEKAIKEKTC 347 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEd--P~-~~~D~~~~~~L~~~~~~~vpI~gde~~------~~~~~~~~~~i~~~a~ 347 (445)
..++.++-+++ .+.|++.++..||= |. .++|++.+++|.+.--.++.+++--.. ..+...+..+++. ..
T Consensus 22 ~~~s~e~Kl~i-a~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~-g~ 99 (524)
T PRK12344 22 ISFSVEDKLRI-ARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDA-GT 99 (524)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhC-CC
Confidence 46788998887 56788999999998 43 567788888887632112555432110 1112334444433 34
Q ss_pred CEEEeccC-------------CcccHHHHHHHHHHHHHcCCcEEecCCC---C-CChhhHHHHH---HhhhcCCccccCC
Q 043137 348 NALLLKVN-------------QIGSVTESIEAVRMSKQAGWGVMASHRS---G-ETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 348 d~v~ik~~-------------~~GGit~a~~ia~~A~~~g~~~~~~~~~---~-et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.+.+=+. +---+..+.+.+++|+++|..+.+++.. + .+...+...+ +...++..+.+.+
T Consensus 100 ~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~D 179 (524)
T PRK12344 100 PVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCD 179 (524)
T ss_pred CEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEcc
Confidence 55554322 1224556778888999999998776641 1 2344554444 3444666666444
No 178
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=38.78 E-value=3.2e+02 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
|+.-+++|.+ .+ ++++++-.+ ++|+..++.++.++--++.
T Consensus 169 Df~lvk~l~~-~~--~~vIAEGr~-~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 169 DFQLVKQLSD-AG--CRVIAEGRY-NTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred cHHHHHHHHh-CC--CeEEeeCCC-CCHHHHHHHHHhCCeEEEE
Confidence 7788888887 55 999999874 7899999999988765543
No 179
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=38.37 E-value=2.6e+02 Score=27.90 Aligned_cols=116 Identities=9% Similarity=0.091 Sum_probs=61.9
Q ss_pred HHHHHhhccC-Cee-eEECCCCc---CCHHHHHHHHHHhCCCce-EEeCcccccCHHHHHHHHhcCCCCEEEeccC--C-
Q 043137 286 DLYKSFISDY-PIV-SIEDPFDQ---DDWEHYAKLTSEVGEKVQ-IVGDDLLVTNPKRVEKAIKEKTCNALLLKVN--Q- 356 (445)
Q Consensus 286 ~~~~~~l~~~-~i~-~iEdP~~~---~D~~~~~~L~~~~~~~vp-I~gde~~~~~~~~~~~~i~~~a~d~v~ik~~--~- 356 (445)
+++..+++.. ... .+-|+=+- .-++..++|++.++ .| |+..+. .++++.+.+++.++ |.|.+-+. .
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p--~~~vi~GnV--~t~e~a~~l~~aGa-d~I~V~~G~G~~ 171 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLP--DSFVIAGNV--GTPEAVRELENAGA-DATKVGIGPGKV 171 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCC--CCEEEEecC--CCHHHHHHHHHcCc-CEEEECCCCCcc
Confidence 4446666643 122 23455332 23356788888887 55 677765 35898988888765 66654421 1
Q ss_pred --------cccH-HHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 357 --------IGSV-TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 357 --------~GGi-t~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
+|.- ..+.-+...+++..++++..+. ..+..... =|+++++..+..|.+.
T Consensus 172 ~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGG-Ir~~~Di~--KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 172 CITKIKTGFGTGGWQLAALRWCAKAARKPIIADGG-IRTHGDIA--KSIRFGASMVMIGSLF 230 (321)
T ss_pred ccceeeeccCCCchHHHHHHHHHHhcCCeEEEECC-cCcHHHHH--HHHHcCCCEEeechhh
Confidence 1110 1222344555566788755442 22222222 2344567777777754
No 180
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.64 E-value=3.8e+02 Score=25.76 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=74.8
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCCc---CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQ---DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~---~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
-.++.++.+++ .+.+.+.++..||=-.|. ++.+..+.+.+. .....+.+= ...+.+++.+.++. .++.+.+-
T Consensus 17 ~~~s~~~k~~i-~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~-~~~~~v~~~--~r~~~~di~~a~~~-g~~~i~i~ 91 (262)
T cd07948 17 AFFDTEDKIEI-AKALDAFGVDYIELTSPAASPQSRADCEAIAKL-GLKAKILTH--IRCHMDDARIAVET-GVDGVDLV 91 (262)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhC-CCCCcEEEE--ecCCHHHHHHHHHc-CcCEEEEE
Confidence 46788998887 456888999999984433 344445555432 212333221 23468899998876 45677764
Q ss_pred cC---------CcccHHH----HHHHHHHHHHcCCcEEecCCC-CCChhhH---HHHHHhhhcCCccccCC
Q 043137 354 VN---------QIGSVTE----SIEAVRMSKQAGWGVMASHRS-GETEDTF---IADLSVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~---------~~GGit~----a~~ia~~A~~~g~~~~~~~~~-~et~~~~---~~~la~a~~~~~~~~G~ 407 (445)
++ ..-+..+ +.+++++|++.|+.+.++... ..+.... ++..+...++..+.+.+
T Consensus 92 ~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (262)
T cd07948 92 FGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIAD 162 (262)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 32 2223444 566679999999998776521 1222333 33444555666666544
No 181
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=37.13 E-value=3e+02 Score=26.81 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..+++++..+. .+|.-+ +.+.++++.+++.+ +|++++|-+ ...+.++.+.+.+..+.++.+.- +|.....
T Consensus 177 ~av~~~r~~~~~-~kIeVE---v~tleea~ea~~~G-aDiI~lDn~---~~e~l~~~v~~l~~~~~~~~lea-sGGI~~~ 247 (277)
T TIGR01334 177 GAIGRLKQTAPE-RKITVE---ADTIEQALTVLQAS-PDILQLDKF---TPQQLHHLHERLKFFDHIPTLAA-AGGINPE 247 (277)
T ss_pred HHHHHHHHhCCC-CCEEEE---CCCHHHHHHHHHcC-cCEEEECCC---CHHHHHHHHHHHhccCCCEEEEE-ECCCCHH
Confidence 455666666442 344333 34689999998776 799999943 56778888887765444444433 3444444
Q ss_pred HHHHHHhhhcCCccccCCCC
Q 043137 390 FIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~ 409 (445)
.+..+|- ++..++..|.|.
T Consensus 248 ni~~ya~-~GvD~is~gal~ 266 (277)
T TIGR01334 248 NIADYIE-AGIDLFITSAPY 266 (277)
T ss_pred HHHHHHh-cCCCEEEeCcce
Confidence 4455543 477888777764
No 182
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=36.76 E-value=64 Score=33.28 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcc--CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhc-CCCCEEEeccCCc
Q 043137 281 GDALKDLYKSFISD--YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKE-KTCNALLLKVNQI 357 (445)
Q Consensus 281 ~~~ai~~~~~~l~~--~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~-~a~d~v~ik~~~~ 357 (445)
..||+-+ +....+ -+-+++=+-+.|.-++-++.-.+-++ +-|.-++. .+..+++.. +. +.+-++.=-++-.
T Consensus 149 aAEAm~m-a~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g--~~i~~~~~--~d~~~l~~~-~~~~~~gv~vQyP~~~ 222 (450)
T COG0403 149 AAEAMLM-AKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLG--IEIEVVDA--DDLDDLESA-DDGDVFGVLVQYPNTF 222 (450)
T ss_pred HHHHHHH-HHHhhcCcCceEEecCCCCHHHHHHHHhhcccCc--eEEEEecc--chhhhhhhc-cccCeEEEEEecCCCC
Confidence 4566654 444554 45667767777766666666666666 77644442 234555544 33 3344455556777
Q ss_pred c-cHHHHHHHHHHHHHcCCcEEecCCCC-----CChhhHHHHHHhhhcCCc---cccCCCC
Q 043137 358 G-SVTESIEAVRMSKQAGWGVMASHRSG-----ETEDTFIADLSVGLATGQ---IKTGAPC 409 (445)
Q Consensus 358 G-Git~a~~ia~~A~~~g~~~~~~~~~~-----et~~~~~~~la~a~~~~~---~~~G~~~ 409 (445)
| -+.+..++...++++|.-++++.... ...-.+=+|+++|.+.+| +.+|+|.
T Consensus 223 G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh 283 (450)
T COG0403 223 GIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH 283 (450)
T ss_pred CccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc
Confidence 7 56679999999999999887776422 122234578889877655 4566664
No 183
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=36.02 E-value=4.5e+02 Score=26.15 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=75.8
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE-------eccCCcccHHHHHHHHHHHHHcCCcE
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL-------LKVNQIGSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~-------ik~~~~GGit~a~~ia~~A~~~g~~~ 377 (445)
+.-+|+.+++|+..+. .||+---.. +.+|.+..++.+...+|. +|-.. -+|+..-+++...+. .+++
T Consensus 208 ~Sl~W~Di~wLr~~T~--LPIvvKGil--t~eDA~~Ave~G~~GIIVSNHGgRQlD~vp-AtI~~L~Evv~aV~~-ri~V 281 (363)
T KOG0538|consen 208 PSLSWKDIKWLRSITK--LPIVVKGVL--TGEDARKAVEAGVAGIIVSNHGGRQLDYVP-ATIEALPEVVKAVEG-RIPV 281 (363)
T ss_pred CCCChhhhHHHHhcCc--CCeEEEeec--ccHHHHHHHHhCCceEEEeCCCccccCccc-chHHHHHHHHHHhcC-ceEE
Confidence 3458899999999998 999776553 479999999988877775 33333 257777777765443 4888
Q ss_pred EecCCCCCChhhHHHHHHhhhcCCccccCCCC-------CchhHHHHHHHHHHHHHh
Q 043137 378 MASHRSGETEDTFIADLSVGLATGQIKTGAPC-------RSERLAKYNQLLRIEEEL 427 (445)
Q Consensus 378 ~~~~~~~et~~~~~~~la~a~~~~~~~~G~~~-------~~e~~~k~n~ll~i~~~l 427 (445)
++.+. .-++...+= |+|+++.-+-+|-|. +...+.|-=++|+=|-|+
T Consensus 282 ~lDGG-VR~G~DVlK--ALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~ 335 (363)
T KOG0538|consen 282 FLDGG-VRRGTDVLK--ALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFEL 335 (363)
T ss_pred EEecC-cccchHHHH--HHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHH
Confidence 77663 222222222 455567777777665 455777777777766554
No 184
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=35.99 E-value=50 Score=26.03 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=17.3
Q ss_pred eEEEEEEEEEEecCCCCceEEEEEEeCCCc
Q 043137 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGH 32 (445)
Q Consensus 3 mkI~~v~~~~v~~~~g~~~v~V~v~td~G~ 32 (445)
|+||+|+.+.+... ++---++.|+.|+.+
T Consensus 1 M~itdVri~~~~~~-~~lka~asV~~dd~f 29 (84)
T PF04026_consen 1 MKITDVRIRKIEPE-GKLKAFASVTFDDCF 29 (84)
T ss_dssp --EEEEEEEETTSS-SSEEEEEEEEETTTE
T ss_pred CccEEEEEEEecCC-CCEEEEEEEEECCEE
Confidence 89999999987543 432235566666543
No 185
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=35.52 E-value=3.4e+02 Score=26.57 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..+++++..+. .+|.-+ +.+.+++.++++.+ +|+|++|-+ ...+..+++.+.++.+-++.+.- +|.....
T Consensus 178 ~av~~~r~~~~~-~kIeVE---v~tleqa~ea~~ag-aDiI~LDn~---~~e~l~~av~~~~~~~~~~~lea-SGGI~~~ 248 (284)
T PRK06096 178 GAINQLRRHAPE-KKIVVE---ADTPKEAIAALRAQ-PDVLQLDKF---SPQQATEIAQIAPSLAPHCTLSL-AGGINLN 248 (284)
T ss_pred HHHHHHHHhCCC-CCEEEE---CCCHHHHHHHHHcC-CCEEEECCC---CHHHHHHHHHHhhccCCCeEEEE-ECCCCHH
Confidence 456677766542 234332 34689999998876 799999865 46677777776654333333433 3444445
Q ss_pred HHHHHHhhhcCCccccCCCC
Q 043137 390 FIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~ 409 (445)
.+..+|- ++..++..|.+.
T Consensus 249 ni~~yA~-tGvD~Is~gal~ 267 (284)
T PRK06096 249 TLKNYAD-CGIRLFITSAPY 267 (284)
T ss_pred HHHHHHh-cCCCEEEECccc
Confidence 5555544 477777777764
No 186
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=35.30 E-value=77 Score=29.53 Aligned_cols=43 Identities=9% Similarity=0.168 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
-|++.++++++.++ +||++.-- +.+++|++++.+.+.+|.+.+
T Consensus 177 ~d~~~i~~l~~~~~--ipvia~GG-i~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 177 PNVEATRELAAAVP--IPVIASGG-VSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCHHHHHHHHHhCC--CCEEEeCC-CCCHHHHHHHHHcCCccEEEE
Confidence 47899999999987 88733322 467999999999887888775
No 187
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.19 E-value=1.9e+02 Score=27.94 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=40.7
Q ss_pred CCCEEEeccCCc-----ccHHHHHHHHHHHHHcCCcEEecCCCCC---C---hhhHHHHHHhhhcCCccccCCC
Q 043137 346 TCNALLLKVNQI-----GSVTESIEAVRMSKQAGWGVMASHRSGE---T---EDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 346 a~d~v~ik~~~~-----GGit~a~~ia~~A~~~g~~~~~~~~~~e---t---~~~~~~~la~a~~~~~~~~G~~ 408 (445)
.+|+|..-+.-- =-+.++-+++..|+++|++++.-.-.++ . .++.++.+|+-+++.++|...+
T Consensus 107 GAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~ 180 (264)
T PRK08227 107 NACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV 180 (264)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC
Confidence 456666655432 1356677788889999999876332221 1 2456677788888888887664
No 188
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.72 E-value=3.2e+02 Score=26.59 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHH--cCCcEEecCCCCCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQ--AGWGVMASHRSGET 386 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~--~g~~~~~~~~~~et 386 (445)
.+..++++++.+...+|..+ +.+.+++...++.+ +|+|++|-+ .+.+.++++.+.+. -++.+..++. .
T Consensus 169 ~~~v~~~k~~~p~~~~I~VE---v~tleea~~A~~~G-aDiI~LDn~---~~e~l~~~v~~~~~~~~~~~ieAsGg---I 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIE---CESLEEAKNAMNAG-ADIVMCDNM---SVEEIKEVVAYRNANYPHVLLEASGN---I 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEE---eCCHHHHHHHHHcC-CCEEEECCC---CHHHHHHHHHHhhccCCCeEEEEECC---C
Confidence 35677777776532556554 35689999988766 599999877 46777777776543 2344444432 2
Q ss_pred hhhHHHHHHhhhcCCccccCCCC
Q 043137 387 EDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 387 ~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
....+..+| .+++.++..|.+.
T Consensus 239 t~~ni~~ya-~~GvD~IsvG~l~ 260 (273)
T PRK05848 239 TLENINAYA-KSGVDAISSGSLI 260 (273)
T ss_pred CHHHHHHHH-HcCCCEEEeChhh
Confidence 233334443 3577777777754
No 189
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.52 E-value=2.1e+02 Score=27.29 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHH
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
+.++..++ .+.+++.+|.|+--|+..++.+-+.++
T Consensus 54 ~~e~~~~L-~~~~~~~gi~f~stpfd~~s~d~l~~~ 88 (241)
T PF03102_consen 54 SEEQHKEL-FEYCKELGIDFFSTPFDEESVDFLEEL 88 (241)
T ss_dssp -HHHHHHH-HHHHHHTT-EEEEEE-SHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHcCCEEEECCCCHHHHHHHHHc
Confidence 44555443 677888999999999976655544433
No 190
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.38 E-value=1.2e+02 Score=28.50 Aligned_cols=62 Identities=8% Similarity=0.143 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcC
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAG 374 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g 374 (445)
+.+++..+++++.++ +||.++-- +++.++++++++.+ ++.+.+-..-.....-+.+ +++.++
T Consensus 57 ~~~~~~i~~i~~~~~--~pv~~~GG-I~s~~d~~~~l~~G-~~~v~ig~~~~~~p~~~~~---i~~~~~ 118 (243)
T cd04731 57 ETMLDVVERVAEEVF--IPLTVGGG-IRSLEDARRLLRAG-ADKVSINSAAVENPELIRE---IAKRFG 118 (243)
T ss_pred cccHHHHHHHHHhCC--CCEEEeCC-CCCHHHHHHHHHcC-CceEEECchhhhChHHHHH---HHHHcC
Confidence 347888999999987 88744443 46799999999876 7787766444333334444 444444
No 191
>PRK06801 hypothetical protein; Provisional
Probab=34.34 E-value=1.7e+02 Score=28.75 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=46.7
Q ss_pred HHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 313 AKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 313 ~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
..++++.+ +|| -.|.. .+.+.+.+.++.+ ++.|++|-+..- -+..+++++++|+.+|+.+ .+|+
T Consensus 67 ~~~a~~~~--vpV~lHlDH~--~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 67 KFEAARHD--IPVVLNLDHG--LHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGA 137 (286)
T ss_pred HHHHHHCC--CCEEEECCCC--CCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCc
Confidence 33444555 565 56763 4688888998876 799999988764 4667888999999999887 4555
No 192
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.31 E-value=2.6e+02 Score=27.39 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
.+.+++++++.+...+|.-+ +.+.+++...++.+ +|+|++|-+. +.+.++++.+.+.... +.++ |....
T Consensus 181 ~~ai~~~r~~~~~~~kIeVE---v~tleea~ea~~~g-aDiI~LDn~s---~e~l~~av~~~~~~~~-leaS---GGI~~ 249 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVE---VDTLDQLEEALELG-VDAVLLDNMT---PDTLREAVAIVAGRAI-TEAS---GRITP 249 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEE---eCCHHHHHHHHHcC-CCEEEeCCCC---HHHHHHHHHHhCCCce-EEEE---CCCCH
Confidence 36788888887533455443 45689999998766 5999999875 4666666666554333 3333 33344
Q ss_pred hHHHHHHhhhcCCccccCCCCC
Q 043137 389 TFIADLSVGLATGQIKTGAPCR 410 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~ 410 (445)
..+..+|. ++..++..|.+.-
T Consensus 250 ~ni~~yA~-tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAA-SGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHh-cCCCEEEeChhhc
Confidence 45566654 4778888887653
No 193
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=34.28 E-value=1.9e+02 Score=27.88 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=61.3
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
++-.++-++.+.+.-+++++--+=|-..+++.+..++. .. +-=+|-..+ .+. ++.+.+ .+.--.|++|=.+.
T Consensus 55 G~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~---vD--ilQIgArn~-rn~-~LL~a~-g~t~kpV~lKrG~~ 126 (258)
T TIGR01362 55 GPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV---VD--IIQIPAFLC-RQT-DLLVAA-AKTGRIVNVKKGQF 126 (258)
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh---Cc--EEEeCchhc-chH-HHHHHH-hccCCeEEecCCCc
Confidence 34445677777776677887666666665554444433 33 322455443 343 333333 23456899999999
Q ss_pred ccHHHHHHHHHHHHHcC-CcEEecCC
Q 043137 358 GSVTESIEAVRMSKQAG-WGVMASHR 382 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g-~~~~~~~~ 382 (445)
.++.+++-++.+..+.| -++++-++
T Consensus 127 ~t~~e~l~aaeyi~~~Gn~~viLcER 152 (258)
T TIGR01362 127 LSPWDMKNVVEKVLSTGNKNILLCER 152 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 99999999999988886 44555443
No 194
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=33.92 E-value=5.4e+02 Score=26.45 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCCCceEEeCcccccCHHHH-HHHHhcCCCCEEEeccC
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRV-EKAIKEKTCNALLLKVN 355 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~-~~~i~~~a~d~v~ik~~ 355 (445)
+.++++++ .+.+.++...|+|=-.+ ..-.+..++|++..+ +.+|..|=- +.++... .+.+..-.+|++.+...
T Consensus 183 ~~~~A~~i-~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~-~~~I~~DLK-~~Di~~~vv~~~a~aGAD~vTVH~e 259 (391)
T PRK13307 183 DLEEVERV-LSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRP-DAFIVADLK-TLDTGNLEARMAADATADAVVISGL 259 (391)
T ss_pred CHHHHHHH-HHhcccccceEEEECHHHHHHhCHHHHHHHHHhCC-CCeEEEEec-ccChhhHHHHHHHhcCCCEEEEecc
Confidence 56788876 44566665668885433 234566778887732 278888854 3455555 44555667899988863
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHH
Q 043137 356 QIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADL 394 (445)
Q Consensus 356 ~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~l 394 (445)
++.....+..+.++++|+.+++.-...++.......+
T Consensus 260 --a~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l 296 (391)
T PRK13307 260 --APISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESL 296 (391)
T ss_pred --CCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh
Confidence 5666788899999999999877322224444443433
No 195
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=33.88 E-value=4.8e+02 Score=26.17 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=61.9
Q ss_pred HHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe-cc-CCcccH
Q 043137 283 ALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL-KV-NQIGSV 360 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i-k~-~~~GGi 360 (445)
+++..+..++.+-+-..+.+|..+.-...+....+..+ +.+.--+. .+++.+++.+..+ ..+|.+ .+ +-.|.+
T Consensus 78 ~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G--~~v~~vd~--~d~~~l~~~i~~~-tklv~le~P~NP~~~~ 152 (366)
T PRK08247 78 AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWN--VRFVYVNT--ASLKAIEQAITPN-TKAIFIETPTNPLMQE 152 (366)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccC--ceEEEECC--CCHHHHHHhcccC-ceEEEEECCCCCCCcH
Confidence 34444445555555667888987766666666655666 44422222 3578888877653 456654 22 236788
Q ss_pred HHHHHHHHHHHHcCCcEEecCC
Q 043137 361 TESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 361 t~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.+..+++++|+++|+.+++...
T Consensus 153 ~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 153 TDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred HHHHHHHHHHHHcCCEEEEECC
Confidence 9999999999999998877653
No 196
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.88 E-value=2.4e+02 Score=22.88 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc--CCcEEecCC
Q 043137 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA--GWGVMASHR 382 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~--g~~~~~~~~ 382 (445)
.+++.+.+.....|+|-+.......+..+.++++.+++. ++.+++|+.
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 588888888889999999998888999999999998887 788888874
No 197
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=32.87 E-value=2.1e+02 Score=28.81 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=50.2
Q ss_pred HHHHHhcCCCCEEEeccCCc-----ccHHHHHHHHHHHHHcCCcEEecCC-CC-----CC-------hhhHHHHHHhhhc
Q 043137 338 VEKAIKEKTCNALLLKVNQI-----GSVTESIEAVRMSKQAGWGVMASHR-SG-----ET-------EDTFIADLSVGLA 399 (445)
Q Consensus 338 ~~~~i~~~a~d~v~ik~~~~-----GGit~a~~ia~~A~~~g~~~~~~~~-~~-----et-------~~~~~~~la~a~~ 399 (445)
+++.++.+ +|+|-.-+.-- =-+.++.+++.-|+++|+++++... -+ +. -++.++++|+-++
T Consensus 152 VedAlrLG-AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 152 VEDALRLG-AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred HHHHHHCC-CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 34444443 55666655431 1366777888889999999876221 11 11 2457889999999
Q ss_pred CCccccCCCCCchhHHH
Q 043137 400 TGQIKTGAPCRSERLAK 416 (445)
Q Consensus 400 ~~~~~~G~~~~~e~~~k 416 (445)
+.++|.-.|...+...+
T Consensus 231 ADIVKv~yp~~~~~f~~ 247 (348)
T PRK09250 231 ADIIKQKLPTNNGGYKA 247 (348)
T ss_pred CCEEEecCCCChhhHHH
Confidence 99999888765444333
No 198
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=32.43 E-value=4.8e+02 Score=25.42 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC--C--cccHHHHHHHHHHHHHc--CCcEEecC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN--Q--IGSVTESIEAVRMSKQA--GWGVMASH 381 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~--~--~GGit~a~~ia~~A~~~--g~~~~~~~ 381 (445)
+++-.++|+++++ +||+.-+. .++++++.+.+. .+|+|.+.-. + -+|+..+.-+..+++.. .++++..+
T Consensus 160 ~~~~i~~l~~~~~--~pvivK~v--~s~~~a~~a~~~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~G 234 (299)
T cd02809 160 TWDDLAWLRSQWK--GPLILKGI--LTPEDALRAVDA-GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDG 234 (299)
T ss_pred CHHHHHHHHHhcC--CCEEEeec--CCHHHHHHHHHC-CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeC
Confidence 4678899999988 88866653 457877777665 4677766431 1 14556666666666665 48875544
Q ss_pred CCCCChhhHHHHHHhhhcCCccccCCCC
Q 043137 382 RSGETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 382 ~~~et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
...+.....-.|+ +++..+.+|.|.
T Consensus 235 -GI~~~~d~~kal~--lGAd~V~ig~~~ 259 (299)
T cd02809 235 -GIRRGTDVLKALA--LGADAVLIGRPF 259 (299)
T ss_pred -CCCCHHHHHHHHH--cCCCEEEEcHHH
Confidence 2344434334443 567777776643
No 199
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=32.20 E-value=1.8e+02 Score=29.33 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=42.6
Q ss_pred ceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc----------cHHHHHHHHHHHHHcCCcE
Q 043137 323 VQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG----------SVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 323 vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G----------Git~a~~ia~~A~~~g~~~ 377 (445)
+|| =.|.. .+.+.+.+.++.+ ++.|++|-+..- =|..+++++.+|+++|+.+
T Consensus 76 VPVaLHLDHg--~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 76 IPICLHQDHG--NSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred CcEEEECCCC--CCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 554 56753 5689999999887 599999999764 5788999999999999877
No 200
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=32.05 E-value=3.1e+02 Score=25.30 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEE---e-C----ccccc-CHHHHHHHHhcCCCCEE
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV---G-D----DLLVT-NPKRVEKAIKEKTCNAL 350 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~---g-d----e~~~~-~~~~~~~~i~~~a~d~v 350 (445)
+..++.++ .+.+...+...++= ..++..+++++.+. +||+ - | ..... ..++++.+.+.+ +|++
T Consensus 21 ~~~~~~~~-a~a~~~~G~~~~~~----~~~~~i~~i~~~~~--~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG-ad~I 92 (221)
T PRK01130 21 SPEIMAAM-ALAAVQGGAVGIRA----NGVEDIKAIRAVVD--VPIIGIIKRDYPDSEVYITPTLKEVDALAAAG-ADII 92 (221)
T ss_pred CHHHHHHH-HHHHHHCCCeEEEc----CCHHHHHHHHHhCC--CCEEEEEecCCCCCCceECCCHHHHHHHHHcC-CCEE
Confidence 34455554 55677788877772 24788899988877 8875 1 1 12221 234566666665 5699
Q ss_pred EeccCCc---ccHHHHHHHHHHHHH-cCCcEEecC
Q 043137 351 LLKVNQI---GSVTESIEAVRMSKQ-AGWGVMASH 381 (445)
Q Consensus 351 ~ik~~~~---GGit~a~~ia~~A~~-~g~~~~~~~ 381 (445)
.++..-. .+ .+..++++.+++ .++.++++.
T Consensus 93 ~~d~~~~~~p~~-~~~~~~i~~~~~~~~i~vi~~v 126 (221)
T PRK01130 93 ALDATLRPRPDG-ETLAELVKRIKEYPGQLLMADC 126 (221)
T ss_pred EEeCCCCCCCCC-CCHHHHHHHHHhCCCCeEEEeC
Confidence 9987532 11 455677778888 788876654
No 201
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.89 E-value=1.8e+02 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHhhccCCeeeEECCCCcCCHHHHHHH
Q 043137 288 YKSFISDYPIVSIEDPFDQDDWEHYAKL 315 (445)
Q Consensus 288 ~~~~l~~~~i~~iEdP~~~~D~~~~~~L 315 (445)
+.+.++++++.|+=+|+..++.+-+..+
T Consensus 82 L~~~~~~~Gi~~~stpfd~~svd~l~~~ 109 (327)
T TIGR03586 82 LFERAKELGLTIFSSPFDETAVDFLESL 109 (327)
T ss_pred HHHHHHHhCCcEEEccCCHHHHHHHHHc
Confidence 3566788999999999987665544443
No 202
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.88 E-value=4.3e+02 Score=24.73 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCC-CeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeE----ECCCC
Q 043137 231 ELLNTAIAKAGYTG-KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI----EDPFD 305 (445)
Q Consensus 231 ~~l~~av~~~g~~~-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~i----EdP~~ 305 (445)
+.++++++.-| . .+-+.+|+.... ... .....++.++++.+.+.+. .+.+. +-...
T Consensus 114 ~~~~~~~~~~~--~~~iivslD~~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~--~li~~di~~~G~~~ 174 (233)
T cd04723 114 DDDEDRLAALG--EQRLVLSLDFRGGQ-------LLK--------PTDFIGPEELLRRLAKWPE--ELIVLDIDRVGSGQ 174 (233)
T ss_pred hHHHHHHHhcC--CCCeEEEEeccCCe-------ecc--------ccCcCCHHHHHHHHHHhCC--eEEEEEcCccccCC
Confidence 34556665544 3 688999994211 100 0134577787776654321 12222 11123
Q ss_pred cCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 306 QDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
.-|++.++++.+.+. +|| +++- +++++++++++..++-.++.
T Consensus 175 g~~~~~~~~i~~~~~--ipvi~~GG--i~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 175 GPDLELLERLAARAD--IPVIAAGG--VRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CcCHHHHHHHHHhcC--CCEEEeCC--CCCHHHHHHHHHcCCCEEEE
Confidence 357888999999887 776 4443 45799999999887444444
No 203
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.58 E-value=4.9e+02 Score=25.20 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee--eEEC
Q 043137 225 ENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV--SIED 302 (445)
Q Consensus 225 ~~~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~--~iEd 302 (445)
+++++.+.++.+++.+. +++.+++-+. ..+.++++++ .+..++.+.. .+=-
T Consensus 52 t~~Er~~~~~~~~~~~~--~~~~viagv~------------------------~~~~~~ai~~-a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 52 SVEERKQIAEIVAEAAK--GKVTLIAHVG------------------------SLNLKESQEL-AKHAEELGYDAISAIT 104 (288)
T ss_pred CHHHHHHHHHHHHHHhC--CCCeEEeccC------------------------CCCHHHHHHH-HHHHHHcCCCEEEEeC
Confidence 35778887777776554 4666766552 1245677776 4455665533 3334
Q ss_pred CCC--cC--C-HHHHHHHHHHh-CCCceEEeCccc-----ccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHH
Q 043137 303 PFD--QD--D-WEHYAKLTSEV-GEKVQIVGDDLL-----VTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSK 371 (445)
Q Consensus 303 P~~--~~--D-~~~~~~L~~~~-~~~vpI~gde~~-----~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~ 371 (445)
|.. +. . .+-|+.+.+.+ + +||+.-..- --+++-+.++.+ .-+++-+|-+- |-+....++.+...
T Consensus 105 P~y~~~~~~~i~~~~~~v~~a~~~--lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s~-~d~~~~~~~~~~~~ 179 (288)
T cd00954 105 PFYYKFSFEEIKDYYREIIAAAAS--LPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFTA-TDLYDLERIRAASP 179 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCC--CCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHHHHHHHhCC
Confidence 532 22 2 23456777777 5 777543211 014667777764 56889999863 44555555443211
Q ss_pred HcCCcEEecC
Q 043137 372 QAGWGVMASH 381 (445)
Q Consensus 372 ~~g~~~~~~~ 381 (445)
.++.++.|.
T Consensus 180 -~~~~v~~G~ 188 (288)
T cd00954 180 -EDKLVLNGF 188 (288)
T ss_pred -CCcEEEEec
Confidence 155554433
No 204
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=31.47 E-value=3.1e+02 Score=27.83 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=59.6
Q ss_pred HHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec--cCCcccHHHHHHH
Q 043137 289 KSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK--VNQIGSVTESIEA 366 (445)
Q Consensus 289 ~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik--~~~~GGit~a~~i 366 (445)
..++.+-+-..+.+|....-+..+..+..+.+ +.+.--+. .+++++++.++.+ ..+|.+- .+-.|.+.+..++
T Consensus 82 l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~g--i~v~~vd~--~d~e~l~~ai~~~-t~lV~lesP~Nptg~~~di~~I 156 (380)
T PRK06176 82 FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNG--LSCTIIDT--SDLSQIKKAIKPN-TKALYLETPSNPLLKITDLAQC 156 (380)
T ss_pred HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcC--eEEEEcCC--CCHHHHHHhcCcC-ceEEEEECCCCCCceecCHHHH
Confidence 44555555667778876655566666666666 66532222 3578888887653 5666542 3456778899999
Q ss_pred HHHHHHcCCcEEecCC
Q 043137 367 VRMSKQAGWGVMASHR 382 (445)
Q Consensus 367 a~~A~~~g~~~~~~~~ 382 (445)
+++|+++|+.+++...
T Consensus 157 ~~la~~~gi~vivD~t 172 (380)
T PRK06176 157 ASVAKDHGLLTIVDNT 172 (380)
T ss_pred HHHHHHcCCEEEEECC
Confidence 9999999999877653
No 205
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.45 E-value=2.2e+02 Score=27.50 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=62.7
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
++-.++-++++.+.-+++++--+=|-..+++.+..++. .. +-=+|-..+ .+. ++.+.+ .+.--.|++|=.+.
T Consensus 63 G~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~---~D--ilQIgArn~-rn~-~LL~a~-g~t~kpV~lKrG~~ 134 (264)
T PRK05198 63 GPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV---VD--VLQIPAFLC-RQT-DLLVAA-AKTGKVVNIKKGQF 134 (264)
T ss_pred CCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh---Cc--EEEECchhc-chH-HHHHHH-hccCCeEEecCCCc
Confidence 44445667777777677887777677666555444443 33 322455443 443 343333 23456899999999
Q ss_pred ccHHHHHHHHHHHHHcC-CcEEecCC
Q 043137 358 GSVTESIEAVRMSKQAG-WGVMASHR 382 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g-~~~~~~~~ 382 (445)
-++.+++-++.+..+.| -++++-++
T Consensus 135 ~t~~e~~~aaeyi~~~Gn~~vilcER 160 (264)
T PRK05198 135 LAPWDMKNVVDKVREAGNDKIILCER 160 (264)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 99999999999998886 55555443
No 206
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=31.44 E-value=5.3e+02 Score=25.73 Aligned_cols=110 Identities=9% Similarity=0.136 Sum_probs=52.8
Q ss_pred HHhhccCCeee-EECCCCcCCHHHHHHHHHHhC-CCceEEeC-cccccCHHHHHHHHhcCC-CCEEEeccCCcccHHHHH
Q 043137 289 KSFISDYPIVS-IEDPFDQDDWEHYAKLTSEVG-EKVQIVGD-DLLVTNPKRVEKAIKEKT-CNALLLKVNQIGSVTESI 364 (445)
Q Consensus 289 ~~~l~~~~i~~-iEdP~~~~D~~~~~~L~~~~~-~~vpI~gd-e~~~~~~~~~~~~i~~~a-~d~v~ik~~~~GGit~a~ 364 (445)
++.+.++++.. +-. +++++++.+ .++.. ..+++... .......+++..+++.+. +|++.+|+.+- =-...+
T Consensus 51 A~~a~~~G~~~i~hK-~~~E~~~sf---vrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg-~s~~~~ 125 (321)
T TIGR01306 51 AEQLAENGYFYIMHR-FDEESRIPF---IKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHG-HSNSVI 125 (321)
T ss_pred HHHHHHcCCEEEEec-CCHHHHHHH---HHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccC-chHHHH
Confidence 45556677543 333 555555444 33332 22433211 111112355666777764 89999999873 223334
Q ss_pred HHHH-HHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccC
Q 043137 365 EAVR-MSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTG 406 (445)
Q Consensus 365 ~ia~-~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G 406 (445)
+.++ +.+.+....++..+.. |.. .+.+| ...++..++.|
T Consensus 126 ~~i~~i~~~~p~~~vi~GnV~-t~e-~a~~l-~~aGad~I~V~ 165 (321)
T TIGR01306 126 NMIKHIKTHLPDSFVIAGNVG-TPE-AVREL-ENAGADATKVG 165 (321)
T ss_pred HHHHHHHHhCCCCEEEEecCC-CHH-HHHHH-HHcCcCEEEEC
Confidence 4333 4445555533433222 222 22333 23466777766
No 207
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=31.19 E-value=5.4e+02 Score=25.62 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=29.4
Q ss_pred CCCCcCCH----HHHHHHHHHhCCCceEEeCccc-ccCHHHHHHHHhcCCCCEEEec
Q 043137 302 DPFDQDDW----EHYAKLTSEVGEKVQIVGDDLL-VTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 302 dP~~~~D~----~~~~~L~~~~~~~vpI~gde~~-~~~~~~~~~~i~~~a~d~v~ik 353 (445)
+|-...|+ +.++.|++.++ +||+--+.- ..+.+.++.+.+ -.+|+|.+.
T Consensus 157 ~p~g~~~f~~~le~i~~i~~~~~--vPVivK~~g~g~~~~~a~~L~~-aGvd~I~Vs 210 (333)
T TIGR02151 157 QPEGDRNFKGWLEKIAEICSQLS--VPVIVKEVGFGISKEVAKLLAD-AGVSAIDVA 210 (333)
T ss_pred CCCCCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 44444566 45677888877 888544321 134555555544 446888886
No 208
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.17 E-value=2.3e+02 Score=26.23 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCCcEEecC
Q 043137 362 ESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 362 ~a~~ia~~A~~~g~~~~~~~ 381 (445)
+..+.+...+..|..-++-|
T Consensus 147 ~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 147 SLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEE
Confidence 34455555555665544333
No 209
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=31.05 E-value=5.7e+02 Score=25.83 Aligned_cols=93 Identities=9% Similarity=0.172 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc--CCc--ccHHHHHHHHHHHHHc--CCcEEecC
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV--NQI--GSVTESIEAVRMSKQA--GWGVMASH 381 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~--~~~--GGit~a~~ia~~A~~~--g~~~~~~~ 381 (445)
+++.+++|++.++ +||+.-+. .++++++.+.+. .+|+|.+.- .+. ++.+...-+.+++++. .+++++.+
T Consensus 209 ~~~~l~~lr~~~~--~PvivKgv--~~~~dA~~a~~~-G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dG 283 (351)
T cd04737 209 SPADIEFIAKISG--LPVIVKGI--QSPEDADVAINA-GADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDS 283 (351)
T ss_pred CHHHHHHHHHHhC--CcEEEecC--CCHHHHHHHHHc-CCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEEC
Confidence 6778899999988 89866653 458888777765 567776631 111 3444444555566666 48876655
Q ss_pred CCCCChhhHHHHHHhhhcCCccccCCC
Q 043137 382 RSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 382 ~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
...+.....-.|+ +++..+.+|.+
T Consensus 284 -GIr~g~Di~kaLa--lGA~~V~iGr~ 307 (351)
T cd04737 284 -GVRRGEHVFKALA--SGADAVAVGRP 307 (351)
T ss_pred -CCCCHHHHHHHHH--cCCCEEEECHH
Confidence 2344444334444 56776666653
No 210
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=31.04 E-value=5.2e+02 Score=26.32 Aligned_cols=108 Identities=8% Similarity=0.100 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC----CcccHHHHHHHHHHHHHcC--CcEEe
Q 043137 306 QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN----QIGSVTESIEAVRMSKQAG--WGVMA 379 (445)
Q Consensus 306 ~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~----~~GGit~a~~ia~~A~~~g--~~~~~ 379 (445)
.-+++.+++|++.++ +||+--+. .++++++.+.+.+ +|.|.+... .-++.+.+.-+..++++.+ +++++
T Consensus 214 ~~~w~~i~~l~~~~~--~PvivKGv--~~~eda~~a~~~G-vd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~ 288 (367)
T TIGR02708 214 KLSPRDIEEIAGYSG--LPVYVKGP--QCPEDADRALKAG-ASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVF 288 (367)
T ss_pred CCCHHHHHHHHHhcC--CCEEEeCC--CCHHHHHHHHHcC-cCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEe
Confidence 447888999999998 99877664 3488888887654 555543321 1123333444455555553 88766
Q ss_pred cCCCCCChhhHHHHHHhhhcCCccccCCC-------CCchhHHHHHHHH
Q 043137 380 SHRSGETEDTFIADLSVGLATGQIKTGAP-------CRSERLAKYNQLL 421 (445)
Q Consensus 380 ~~~~~et~~~~~~~la~a~~~~~~~~G~~-------~~~e~~~k~n~ll 421 (445)
.+. .-+.....- |+++++..+.+|-| .+.+.+.++=+.|
T Consensus 289 dGG-Ir~g~Dv~K--aLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l 334 (367)
T TIGR02708 289 DSG-VRRGQHVFK--ALASGADLVALGRPVIYGLALGGSQGARQVFEYL 334 (367)
T ss_pred eCC-cCCHHHHHH--HHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHH
Confidence 553 223222222 44467877777765 2445554444433
No 211
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=30.95 E-value=3.4e+02 Score=27.36 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=60.7
Q ss_pred HHHHHHHHHhh-----ccCCeeeEECCCCcCCHHHHHHHHHHhCCCc-eEEeCcccccCHHHHHHHHhcCCCCEEEec-c
Q 043137 282 DALKDLYKSFI-----SDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV-QIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V 354 (445)
Q Consensus 282 ~~ai~~~~~~l-----~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v-pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~ 354 (445)
.+++..+...+ ++-+-..+.+|-.+-.+..|..+.++.+-++ .+--++....+++++++.+..+ ..++.+. +
T Consensus 88 t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~~ 166 (398)
T TIGR03392 88 TESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR-TRILALGQM 166 (398)
T ss_pred HHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC-ceEEEEECc
Confidence 35554444333 3334566677766555566777766655211 2212322223578888887654 4555543 2
Q ss_pred -CCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 355 -NQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 355 -~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+..|.+.+..+++++|+++|+.+++..
T Consensus 167 ~n~tG~~~~~~~i~~~~~~~~~~~ivD~ 194 (398)
T TIGR03392 167 SNVTGGCPDLARAITLAHQYGAVVVVDG 194 (398)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEh
Confidence 467888999999999999999886655
No 212
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=30.94 E-value=3.2e+02 Score=25.48 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=46.3
Q ss_pred ceEEeCcccccC----HHHHHHHHhcCCCCEEEeccCCccc---HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHH
Q 043137 323 VQIVGDDLLVTN----PKRVEKAIKEKTCNALLLKVNQIGS---VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLS 395 (445)
Q Consensus 323 vpI~gde~~~~~----~~~~~~~i~~~a~d~v~ik~~~~GG---it~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la 395 (445)
++++.+...+.. ...+.+.++. .++.+|+..-.... .-.++++..+|+++++++++... .++|
T Consensus 8 lylvt~~~~~~~~~~~~~~ve~al~~-Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~---------~dlA 77 (211)
T COG0352 8 LYLVTDRPLIYDGVDLLEWVEAALKG-GVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDR---------VDLA 77 (211)
T ss_pred eEEEcCCccccccchhHHHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc---------HHHH
Confidence 555544433221 2444455544 48888877644333 45678999999999999988663 5666
Q ss_pred hhhcCCccccCC
Q 043137 396 VGLATGQIKTGA 407 (445)
Q Consensus 396 ~a~~~~~~~~G~ 407 (445)
.+.++..+-+|.
T Consensus 78 ~~~~AdGVHlGq 89 (211)
T COG0352 78 LAVGADGVHLGQ 89 (211)
T ss_pred HhCCCCEEEcCC
Confidence 655555555443
No 213
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.39 E-value=1.6e+02 Score=29.44 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCccc
Q 043137 280 SGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GG 359 (445)
+.++ .+.+.+.++++++.|+=.|+..++.+-+.++- .+ -+.|...| .++..=++.+.+. ---|.++.+- .+
T Consensus 74 ~~e~-~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~--v~-~~KIaS~~--~~n~pLL~~~A~~--gkPvilStGm-at 144 (329)
T TIGR03569 74 SEED-HRELKEYCESKGIEFLSTPFDLESADFLEDLG--VP-RFKIPSGE--ITNAPLLKKIARF--GKPVILSTGM-AT 144 (329)
T ss_pred CHHH-HHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CC-EEEECccc--ccCHHHHHHHHhc--CCcEEEECCC-CC
Confidence 3344 34457778899999999999766555443330 11 01222222 2333322233222 2234455444 25
Q ss_pred HHHHHHHHHHHHHcCC
Q 043137 360 VTESIEAVRMSKQAGW 375 (445)
Q Consensus 360 it~a~~ia~~A~~~g~ 375 (445)
+.|..+++...+++|.
T Consensus 145 l~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 145 LEEIEAAVGVLRDAGT 160 (329)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5555555555555544
No 214
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=30.28 E-value=3.5e+02 Score=26.77 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEec--ccccccc------------CCc-eeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDV--AASEFYG------------SDK-TYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~--~a~~~~~------------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
.-++.++|+++.+.|+. ++.||-=. -++.||. .++ .|+.++. +..|+++....-
T Consensus 161 DGrV~aIR~aLd~~g~~-~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpa----------n~~eAlre~~~D 229 (314)
T cd00384 161 DGRVAAIREALDEAGFS-DVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPA----------NRREALREVELD 229 (314)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999874 67776321 1233441 112 6776632 456676554333
Q ss_pred hcc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 292 ISD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 292 l~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
+++ .++.++.=-++. ++-.+++++++. +|+++-..+ .-..=++...++++.|- . .-+++...-.
T Consensus 230 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~--~PvaaYqVS-GEYaMikaAa~~G~id~-----~-----~~~~Esl~~~ 294 (314)
T cd00384 230 IEEGADILMVKPALAY--LDIIRDVRERFD--LPVAAYNVS-GEYAMIKAAAKNGWIDE-----E-----RVVLESLTSI 294 (314)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhcC--CCEEEEEcc-HHHHHHHHHHHcCCccH-----H-----HHHHHHHHHH
Confidence 333 567777755664 557889999997 999877543 11223344555555542 1 2233444444
Q ss_pred HHcCCcEEe
Q 043137 371 KQAGWGVMA 379 (445)
Q Consensus 371 ~~~g~~~~~ 379 (445)
+.+|-.+++
T Consensus 295 kRAGAd~Ii 303 (314)
T cd00384 295 KRAGADLII 303 (314)
T ss_pred HhcCCCEEE
Confidence 556766655
No 215
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=30.04 E-value=5.6e+02 Score=25.44 Aligned_cols=93 Identities=11% Similarity=0.175 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC-------C------cccHHHHHHHHHHHHHcCC
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN-------Q------IGSVTESIEAVRMSKQAGW 375 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~-------~------~GGit~a~~ia~~A~~~g~ 375 (445)
.+..++++++.+ .+||+... +.+++.++.+++. .+|+|.+-.. + ...++...++.+.++..++
T Consensus 123 ~~~i~~ik~~~p-~v~Vi~G~--v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~v 198 (325)
T cd00381 123 IEMIKFIKKKYP-NVDVIAGN--VVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGV 198 (325)
T ss_pred HHHHHHHHHHCC-CceEEECC--CCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCC
Confidence 456777887764 48886654 3468888888764 4677765321 1 1234555677777888899
Q ss_pred cEEecCCCCCChhhHHHHHHhhhcCCccccCCC
Q 043137 376 GVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 376 ~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+++..+.. .+... +.-|+++++..+.+|..
T Consensus 199 pVIA~GGI-~~~~d--i~kAla~GA~~VmiGt~ 228 (325)
T cd00381 199 PVIADGGI-RTSGD--IVKALAAGADAVMLGSL 228 (325)
T ss_pred cEEecCCC-CCHHH--HHHHHHcCCCEEEecch
Confidence 98654322 22222 22233456777777663
No 216
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.78 E-value=4.8e+02 Score=24.55 Aligned_cols=99 Identities=10% Similarity=0.235 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCC---eeeEECC----
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP---IVSIEDP---- 303 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~---i~~iEdP---- 303 (445)
+.++++...-| +++-+.+|+.....+.+ .|. .+..+++.+.++.+ ++++ +.+-.--
T Consensus 113 ~~l~~~~~~fg--~~ivvslD~~~g~v~~~--gw~---------~~~~~~~~~~~~~~----~~~g~~~ii~tdi~~dGt 175 (234)
T PRK13587 113 DWLKEMAHTFP--GRIYLSVDAYGEDIKVN--GWE---------EDTELNLFSFVRQL----SDIPLGGIIYTDIAKDGK 175 (234)
T ss_pred HHHHHHHHHcC--CCEEEEEEeeCCEEEec--CCc---------ccCCCCHHHHHHHH----HHcCCCEEEEecccCcCC
Confidence 34445544444 47889999843221111 111 12345556655443 3344 3333221
Q ss_pred CCcCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 304 FDQDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 304 ~~~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
..--|++-+.++++.++ +|| +++- +.+++++.++++.+ ++.+.
T Consensus 176 ~~G~~~~li~~l~~~~~--ipvi~~GG--i~s~edi~~l~~~G-~~~vi 219 (234)
T PRK13587 176 MSGPNFELTGQLVKATT--IPVIASGG--IRHQQDIQRLASLN-VHAAI 219 (234)
T ss_pred CCccCHHHHHHHHHhCC--CCEEEeCC--CCCHHHHHHHHHcC-CCEEE
Confidence 11237888999999887 776 3443 35799999998764 44443
No 217
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=29.71 E-value=3.5e+02 Score=25.35 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=47.9
Q ss_pred ccCHHHHHHHHHHhhccC--CeeeEECCCCcCCHHHHHHHHHHh-CCCceE-EeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 278 KISGDALKDLYKSFISDY--PIVSIEDPFDQDDWEHYAKLTSEV-GEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~--~i~~iEdP~~~~D~~~~~~L~~~~-~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..+++++..+ +...+.+ .+.|+|--=..-+.+-.+++++.+ . +|| +|.- ++++++++++++.+ +|.+.+-
T Consensus 131 ~~~~e~~~ay-A~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~--~pl~vGGG--Irs~e~a~~l~~aG-AD~VVVG 204 (219)
T cd02812 131 DLKPEDAAAY-ALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGD--TPLIVGGG--IRSGEQAKEMAEAG-ADTIVVG 204 (219)
T ss_pred CCCHHHHHHH-HHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCC--CCEEEeCC--CCCHHHHHHHHHcC-CCEEEEC
Confidence 4566776655 5555554 478899322336788899999988 6 776 6665 46799999998766 4666553
No 218
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.66 E-value=3e+02 Score=22.13 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCce-EEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 312 YAKLTSEVGEKVQ-IVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 312 ~~~L~~~~~~~vp-I~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+.++-+...-++- |+.... .. .+-+.++++.+. +++.=|+.-. .+.++.++.++|+++|..++++|
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~-~h-~~~~~~~l~~g~-~v~~EKP~~~-~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPS-SH-AEIAKKALEAGK-HVLVEKPLAL-TLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHTTESEEEEESSGG-GH-HHHHHHHHHTTS-EEEEESSSSS-SHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHhhcCCEEEEecCCc-ch-HHHHHHHHHcCC-EEEEEcCCcC-CHHHHHHHHHHHHHhCCEEEEeC
Confidence 4455553321233 444443 23 566677777776 7777776654 79999999999999999999876
No 219
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.63 E-value=3.9e+02 Score=26.25 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..++++++.+...+|.-+ +.+.+++.+.++.+ +|++++|=+. +.+.++++.+.+. .+.+.. +|.....
T Consensus 185 ~av~~~r~~~~~~~kIeVE---v~tleea~~a~~ag-aDiImLDnms---pe~l~~av~~~~~-~~~lea---SGGI~~~ 253 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEVE---VESLAAAEEAAAAG-ADIIMLDNMS---LEQIEQAITLIAG-RSRIEC---SGNIDMT 253 (290)
T ss_pred HHHHHHHHhCCCCCeEEEE---CCCHHHHHHHHHcC-CCEEEECCCC---HHHHHHHHHHhcC-ceEEEE---ECCCCHH
Confidence 5667777776422334222 35688888888775 5999998775 4555555555443 333333 2334444
Q ss_pred HHHHHHhhhcCCccccCCCCC
Q 043137 390 FIADLSVGLATGQIKTGAPCR 410 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~~ 410 (445)
.+...|. ++..++..|.+.-
T Consensus 254 ni~~yA~-tGVD~Is~galth 273 (290)
T PRK06559 254 TISRFRG-LAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHh-cCCCEEEeCcccc
Confidence 4555544 4777777777653
No 220
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.21 E-value=89 Score=30.94 Aligned_cols=44 Identities=14% Similarity=0.557 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
-+++..+++++.++ +||++.-- +++++++.++++...+|.|++=
T Consensus 179 ~~~~~i~~i~~~~~--ipvi~nGg-I~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 179 ANWDIIARVKQAVR--IPVIGNGD-IFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hhHHHHHHHHHcCC--CcEEEeCC-CCCHHHHHHHHHhhCCCEEEEC
Confidence 36788889999888 89855544 4679999999988889999873
No 221
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.80 E-value=2.1e+02 Score=27.96 Aligned_cols=63 Identities=5% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 043137 312 YAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 312 ~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~---GGit~a~~ia~~A~~~g~~~ 377 (445)
...++++.+ +||+--=-...+.+.+.+.++.+ ++.|++|-+.. -=|..+++++.+|+.+|+.+
T Consensus 66 ~~~~A~~~~--VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 66 VSAAAKQYH--HPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred HHHHHHHCC--CCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 222
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=28.65 E-value=7.4e+02 Score=26.40 Aligned_cols=129 Identities=11% Similarity=0.256 Sum_probs=74.5
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCCC---cCCHHHHHHHHHHhCC-------CceEEeCcccccCHHHHHHHHhcC-
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPFD---QDDWEHYAKLTSEVGE-------KVQIVGDDLLVTNPKRVEKAIKEK- 345 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~~---~~D~~~~~~L~~~~~~-------~vpI~gde~~~~~~~~~~~~i~~~- 345 (445)
-.++.+|-+++ .+.|++.++..||=-+| ++|.+..+++.+.... .+|.+.- +.....+++...++..
T Consensus 101 v~fs~eeKi~I-a~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a-~~R~~~~dId~a~~a~~ 178 (503)
T PLN03228 101 GSLTPPQKLEI-ARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICG-IARCKKRDIEAAWEALK 178 (503)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEee-ecccCHhhHHHHHHhhc
Confidence 46788998887 66789999999998665 4566667777654321 0122111 1112356777766542
Q ss_pred --CCCEEEecc-------------CCcccHHHHHHHHHHHHHcCCc-EEecC-CCCCChhhHHHHH---HhhhcCCcccc
Q 043137 346 --TCNALLLKV-------------NQIGSVTESIEAVRMSKQAGWG-VMASH-RSGETEDTFIADL---SVGLATGQIKT 405 (445)
Q Consensus 346 --a~d~v~ik~-------------~~~GGit~a~~ia~~A~~~g~~-~~~~~-~~~et~~~~~~~l---a~a~~~~~~~~ 405 (445)
..+.+.+-+ ++-.-+..+.+++.+|+++|.. +.+++ ....+...+..++ +...++..+.+
T Consensus 179 ~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l 258 (503)
T PLN03228 179 YAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGI 258 (503)
T ss_pred ccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEE
Confidence 223344322 2223355567788899999986 66666 2233444444444 34446666664
Q ss_pred CC
Q 043137 406 GA 407 (445)
Q Consensus 406 G~ 407 (445)
.+
T Consensus 259 ~D 260 (503)
T PLN03228 259 AD 260 (503)
T ss_pred ec
Confidence 44
No 223
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=28.54 E-value=4e+02 Score=28.43 Aligned_cols=116 Identities=12% Similarity=0.221 Sum_probs=67.5
Q ss_pred HHHHHhhcc-CCeeeEECCCCcC--CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEecc-------C
Q 043137 286 DLYKSFISD-YPIVSIEDPFDQD--DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV-------N 355 (445)
Q Consensus 286 ~~~~~~l~~-~~i~~iEdP~~~~--D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~-------~ 355 (445)
++...+++. .++..+-=+--.. .++..++|++..+ .++|++.+. .++++.+.+++. .+|+|.+-. +
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p-~~~vi~g~v--~t~e~a~~a~~a-GaD~i~vg~g~G~~~~t 326 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYP-ELDVIGGNV--VTMYQAQNLIQA-GVDGLRVGMGSGSICTT 326 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCC-CCcEEEecC--CCHHHHHHHHHc-CcCEEEECCCCCccccC
Confidence 343444442 4455553332111 2356788888875 378755543 468999998875 567876532 1
Q ss_pred Cc------ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccccCCC
Q 043137 356 QI------GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAP 408 (445)
Q Consensus 356 ~~------GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~~G~~ 408 (445)
+. .-++....+.++++..+++++..+....+.+ +--|+++++..+.+|..
T Consensus 327 ~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~d---i~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 327 QEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGH---IVKALTLGASTVMMGSF 382 (505)
T ss_pred ccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHH---HHHHHHcCCCEEEEchh
Confidence 11 1345667788888889999876553222221 22244556778888773
No 224
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=28.02 E-value=5.5e+02 Score=24.68 Aligned_cols=111 Identities=8% Similarity=0.057 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHH-HHHHHHHHhhccCCeeeE--ECCCCcCC
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGD-ALKDLYKSFISDYPIVSI--EDPFDQDD 308 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~-~ai~~~~~~l~~~~i~~i--EdP~~~~D 308 (445)
.+++..+.-|. ..+-+.+|+.. .+++ .|.+...+ |. ....+++. ++++.+.+.+..+=+.-| +--+.--|
T Consensus 117 ~~~~i~~~fG~-~~IvvsiD~k~---~~~g-~~~V~~~G-W~-~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~d 189 (253)
T TIGR02129 117 RLKEIVSLVGK-DRLIVDLSCRK---TQDG-RWIVAMNK-WQ-TITDLELNAETLEELSKYCDEFLIHAADVEGLCKGID 189 (253)
T ss_pred HHHHHHHHhCC-CCEEEEEEEEE---cCCC-cEEEEECC-Cc-ccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCC
Confidence 34455555552 37999999930 0112 23322111 10 11345555 655554332221111122 11122348
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhc--CCCCEEEe
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKE--KTCNALLL 352 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~--~a~d~v~i 352 (445)
++.+++|++.++ +||++.-- +++.+|+.++-+. +..+++.-
T Consensus 190 lel~~~l~~~~~--ipVIASGG-v~s~eDi~~l~~~~~g~~~aIvG 232 (253)
T TIGR02129 190 EELVSKLGEWSP--IPITYAGG-AKSIDDLDLVDELSKGKVDLTIG 232 (253)
T ss_pred HHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHhcCCCCcEEee
Confidence 999999999988 88733322 4679999887332 45555543
No 225
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.92 E-value=2.2e+02 Score=27.84 Aligned_cols=65 Identities=8% Similarity=0.137 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 312 YAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 312 ~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
...++++.+ +|| =.|.. .+.+.+.+.++.+ ++.|++|-+..- =+..+++++++|+++|+.+ -+||
T Consensus 66 ~~~~a~~~~--VPValHLDH~--~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~ 137 (284)
T PRK12737 66 AEVAARKYN--IPLALHLDHH--EDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGR 137 (284)
T ss_pred HHHHHHHCC--CCEEEECCCC--CCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 445556666 665 56653 4689999999886 779999988652 3567899999999999876 4555
No 226
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=27.90 E-value=8.2e+02 Score=26.67 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=76.2
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECC-----------CCcCCHHHHHHHHHHhCCCceE---------EeCcccccCHHH
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDP-----------FDQDDWEHYAKLTSEVGEKVQI---------VGDDLLVTNPKR 337 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP-----------~~~~D~~~~~~L~~~~~~~vpI---------~gde~~~~~~~~ 337 (445)
+++.+|.+.. ++.+++.++..||== +..++++-++.+++..+ ++++ +|-..+ +++
T Consensus 23 r~~~~d~l~i-a~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~-~~~lqml~Rg~n~vg~~~y---pdd 97 (593)
T PRK14040 23 RLRLDDMLPI-AAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMP-NTPQQMLLRGQNLLGYRHY---ADD 97 (593)
T ss_pred ccCHHHHHHH-HHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCC-CCeEEEEecCcceeccccC---cHH
Confidence 5678888876 677888999999971 45688899999999875 4675 222221 333
Q ss_pred ----HHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE--ecCC-CCCChhhHHHHH---HhhhcCCccccCC
Q 043137 338 ----VEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM--ASHR-SGETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 338 ----~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~--~~~~-~~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+-+......+|++.+=-.- .=+..+.+.+.+|++.|..+. ++.+ +.+......+++ +...++..+.+-+
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~l-nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~D 176 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAM-NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKD 176 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeC-CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECC
Confidence 2223334456877765321 225778889999999998742 3221 222233444443 4445676666444
No 227
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.85 E-value=7.5e+02 Score=26.19 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=79.4
Q ss_pred CccCHHHHHHHHHHhhccCCeeeEECCC---CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 277 QKISGDALKDLYKSFISDYPIVSIEDPF---DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~iEdP~---~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.++-+++ .+.|++.++..||=-+ +++|++..+++.+... +..|++-= .....++...++.+ ++.+.+-
T Consensus 19 ~~~s~e~K~~i-a~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~-~~~i~a~~--r~~~~di~~a~~~g-~~~v~i~ 93 (488)
T PRK09389 19 VSLTPEEKLEI-ARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGL-NAEICSFA--RAVKVDIDAALECD-VDSVHLV 93 (488)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCC-CcEEEeec--ccCHHHHHHHHhCC-cCEEEEE
Confidence 45788898887 5678899999999844 4567888888876432 35554432 23478888888754 4565544
Q ss_pred cCC-------------cccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHHH---HhhhcCCccccCC
Q 043137 354 VNQ-------------IGSVTESIEAVRMSKQAGWGVMASHRS-GETEDTFIADL---SVGLATGQIKTGA 407 (445)
Q Consensus 354 ~~~-------------~GGit~a~~ia~~A~~~g~~~~~~~~~-~et~~~~~~~l---a~a~~~~~~~~G~ 407 (445)
+.- ---+..+.+.+++|++.|+.+.++... ..+...+...+ +...++..+.+.+
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 164 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCD 164 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 322 123455677788999999987776532 22344454444 3344566666444
No 228
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.84 E-value=2.8e+02 Score=27.15 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=58.5
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
+.-.++-++.+.+.-+++++--+=|=..+++.+ .+.+... +-=+|--. +.+ .++.+.+ .+.--.|++|=.+.
T Consensus 69 G~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~---~vae~~D--ilQIgAr~-~rq-tdLL~a~-~~tgkpV~lKkGq~ 140 (290)
T PLN03033 69 GPGMAEGLKILEKVKVAYDLPIVTDVHESSQCE---AVGKVAD--IIQIPAFL-CRQ-TDLLVAA-AKTGKIINIKKGQF 140 (290)
T ss_pred CCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHH---HHHhhCc--EEeeCcHH-HHH-HHHHHHH-HccCCeEEeCCCCC
Confidence 344457777777766778876665555444433 3333333 32244443 233 2333322 23556899999999
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecC
Q 043137 358 GSVTESIEAVRMSKQAGW-GVMASH 381 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g~-~~~~~~ 381 (445)
..+.+++-++....+.|- ++++-+
T Consensus 141 ~t~~e~~~aaeki~~~GN~~viLcE 165 (290)
T PLN03033 141 CAPSVMRNSAEKVRLAGNPNVMVCE 165 (290)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 999999999999888863 454444
No 229
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=27.81 E-value=3.7e+02 Score=25.85 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=67.1
Q ss_pred ccCHHHHHHHHHHhhccCC---eeeE-ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec
Q 043137 278 KISGDALKDLYKSFISDYP---IVSI-EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~---i~~i-EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik 353 (445)
..++.+..+. .++++ +..+ |.++-...++.++.+++.+. +||.--++. -++.++...- .-.+|+|++=
T Consensus 65 d~dp~~ia~~----Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~--~PvL~KDFi-iD~yQI~~Ar-~~GADavLLI 136 (254)
T COG0134 65 DFDPVEIAKA----YEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVD--LPVLRKDFI-IDPYQIYEAR-AAGADAVLLI 136 (254)
T ss_pred cCCHHHHHHH----HHHhCCeEEEEecCccccCCCHHHHHHHHHhcC--CCeeeccCC-CCHHHHHHHH-HcCcccHHHH
Confidence 4566664433 44454 5555 55666789999999999999 999777764 4577766543 3357888776
Q ss_pred cCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 354 ~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+.-.. =.+..++.+.|++.|+.+.+--
T Consensus 137 ~~~L~-~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 137 VAALD-DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHhcC-HHHHHHHHHHHHHcCCeeEEEE
Confidence 66553 3568999999999999986644
No 230
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.16 E-value=4.9e+02 Score=25.39 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCce-EEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 311 HYAKLTSEVGEKVQ-IVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 311 ~~~~L~~~~~~~vp-I~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
..+++|+..+. .+ | |..+.+++++.+.++.+ +|+|++|-+. +.++++++++....+ ++.+-. +|.....
T Consensus 177 Av~~aR~~~~~-~~kI---EVEvesle~~~eAl~ag-aDiImLDNm~---~e~~~~av~~l~~~~-~~~lEa-SGgIt~~ 246 (280)
T COG0157 177 AVRRARAAAPF-TKKI---EVEVESLEEAEEALEAG-ADIIMLDNMS---PEELKEAVKLLGLAG-RALLEA-SGGITLE 246 (280)
T ss_pred HHHHHHHhCCC-CceE---EEEcCCHHHHHHHHHcC-CCEEEecCCC---HHHHHHHHHHhccCC-ceEEEE-eCCCCHH
Confidence 45556655542 22 2 12245678888887654 6888888775 456666666654444 333444 3333333
Q ss_pred HHHHHHhhhcCCccccCCCCCchh
Q 043137 390 FIADLSVGLATGQIKTGAPCRSER 413 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~~~e~ 413 (445)
.+...| .++..++..|.|.-+.+
T Consensus 247 ni~~yA-~tGVD~IS~galths~~ 269 (280)
T COG0157 247 NIREYA-ETGVDVISVGALTHSAP 269 (280)
T ss_pred HHHHHh-hcCCCEEEeCccccCCc
Confidence 334443 35777777777654433
No 231
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=27.05 E-value=3.8e+02 Score=26.97 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=61.3
Q ss_pred HHHHHHHHHhh-----ccCCeeeEECCCCcCCHHHHHHHHHHhCCCc-eEEeCcccccCHHHHHHHHhcCCCCEEEec-c
Q 043137 282 DALKDLYKSFI-----SDYPIVSIEDPFDQDDWEHYAKLTSEVGEKV-QIVGDDLLVTNPKRVEKAIKEKTCNALLLK-V 354 (445)
Q Consensus 282 ~~ai~~~~~~l-----~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~v-pI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~ 354 (445)
.+++..+.+.+ .+-+-..+.+|-.+-.+..|..+.+..+-.+ .|--++....+++++++.+..+ ..++.+. +
T Consensus 91 t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-t~lv~i~~~ 169 (401)
T PRK10874 91 TESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR-TRILALGQM 169 (401)
T ss_pred HHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC-cEEEEEeCC
Confidence 45555544443 2334455666655555667777766655211 2222332223578888888543 4555543 2
Q ss_pred -CCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 355 -NQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 355 -~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
+..|.+.+..+|+++|+++|+.+++...
T Consensus 170 ~n~tG~~~~~~~i~~l~~~~g~~~ivD~a 198 (401)
T PRK10874 170 SNVTGGCPDLARAITLAHQAGMVVMVDGA 198 (401)
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEECC
Confidence 4678888999999999999998876653
No 232
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=26.87 E-value=3.9e+02 Score=26.63 Aligned_cols=128 Identities=17% Similarity=0.219 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEec--ccccccc------------CCc-eeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDV--AASEFYG------------SDK-TYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~--~a~~~~~------------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
.-++.++|+++.+.|++ ++.||-=. -++.+|. .++ .|+.++. +..++++....-
T Consensus 169 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~----------n~~eAlre~~~D 237 (323)
T PRK09283 169 DGRVGAIREALDEAGFT-DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPA----------NRREALREVALD 237 (323)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999874 66666321 1223441 122 6777632 456776654333
Q ss_pred hcc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 292 ISD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 292 l~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
+++ .++.++.=-++. ++-.++++++++ +||++-..+ .-..-++...++++.|- . .-+++...-.
T Consensus 238 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~--~PvaaYqVS-GEYaMikaAa~~G~~D~-----~-----~~~~Esl~~~ 302 (323)
T PRK09283 238 IEEGADMVMVKPALPY--LDIIRRVKDEFN--LPVAAYQVS-GEYAMIKAAAQNGWIDE-----E-----RVVLESLLSI 302 (323)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHhcCC--CCEEEEEcc-HHHHHHHHHHHcCCCCH-----H-----HHHHHHHHHH
Confidence 333 567777744554 557888999988 999877643 11233445555666553 1 2234444445
Q ss_pred HHcCCcEEec
Q 043137 371 KQAGWGVMAS 380 (445)
Q Consensus 371 ~~~g~~~~~~ 380 (445)
+.+|-.+++.
T Consensus 303 kRAGAd~IiT 312 (323)
T PRK09283 303 KRAGADGILT 312 (323)
T ss_pred HhcCCCEEEe
Confidence 5667776553
No 233
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=26.83 E-value=2.7e+02 Score=26.42 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHhhccC--CeeeEECCCCcCCHHHHHHHHHHhCCCceEE
Q 043137 280 SGDALKDLYKSFISDY--PIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~--~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~ 326 (445)
..++++++... ..+. +..|++-|. +.+.++++.+..+ .|+.
T Consensus 158 ~~~eai~Ra~a-y~~AGAD~v~v~~~~---~~~~~~~~~~~~~--~Pl~ 200 (243)
T cd00377 158 GLDEAIERAKA-YAEAGADGIFVEGLK---DPEEIRAFAEAPD--VPLN 200 (243)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEeCCCC---CHHHHHHHHhcCC--CCEE
Confidence 56789988554 4444 488998765 7788999999987 7764
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=26.75 E-value=2.8e+02 Score=28.92 Aligned_cols=83 Identities=12% Similarity=0.170 Sum_probs=46.0
Q ss_pred CeeeE-ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHH----HHhcCCCCEEEeccCC-----cccHHHHHH
Q 043137 296 PIVSI-EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEK----AIKEKTCNALLLKVNQ-----IGSVTESIE 365 (445)
Q Consensus 296 ~i~~i-EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~----~i~~~a~d~v~ik~~~-----~GGit~a~~ 365 (445)
.+..+ =|++++...+.|+.+.++.+ +|+..... ..++.++.+ .......|+|.+|..= ...+.++.+
T Consensus 131 kV~lV~~D~~R~aa~eQL~~~a~~~g--v~v~~~~~-~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~ 207 (433)
T PRK10867 131 KVLLVAADVYRPAAIEQLKTLGEQIG--VPVFPSGD-GQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKA 207 (433)
T ss_pred cEEEEEccccchHHHHHHHHHHhhcC--CeEEecCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHH
Confidence 34433 46777777777777777777 77654321 123555442 3345567888888652 123445555
Q ss_pred HHHHHHHcCCcEEecC
Q 043137 366 AVRMSKQAGWGVMASH 381 (445)
Q Consensus 366 ia~~A~~~g~~~~~~~ 381 (445)
+.+......+-.++..
T Consensus 208 i~~~v~p~evllVlda 223 (433)
T PRK10867 208 IKAAVNPDEILLVVDA 223 (433)
T ss_pred HHHhhCCCeEEEEEec
Confidence 5555544444434443
No 235
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=26.71 E-value=3.9e+02 Score=26.55 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEec--ccccccc-----------CCc-eeeecccCCCCCCCCccCHHHHHHHHHHhh
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDV--AASEFYG-----------SDK-TYDLNFKEENNDGSQKISGDALKDLYKSFI 292 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~--~a~~~~~-----------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l 292 (445)
.-++.++|+++.+.|+. ++.||-=. -++.||. .++ .|+.+.. +..|+++....-+
T Consensus 171 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~----------n~~eAlre~~~D~ 239 (322)
T PRK13384 171 DGQVKAIRQGLDAAGFE-HVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYA----------NGRQALLEALLDE 239 (322)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCC----------CHHHHHHHHHhhH
Confidence 45788999999999874 66666322 1234442 122 6777632 3466765533223
Q ss_pred cc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHH
Q 043137 293 SD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSK 371 (445)
Q Consensus 293 ~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~ 371 (445)
++ .++.++.=-++. ++-.+++++++. +|+++-..+ .-..=++...++++.|- . .-+++...--+
T Consensus 240 ~EGAD~lMVKPal~Y--LDIi~~~k~~~~--lPvaaYqVS-GEYaMikaAa~~G~~d~-----~-----~~~~Esl~~~k 304 (322)
T PRK13384 240 AEGADILMVKPGTPY--LDVLSRLRQETH--LPLAAYQVG-GEYAMIKFAALAGALDE-----R-----AVVTETLGGLK 304 (322)
T ss_pred hhCCCEEEEcCCchH--HHHHHHHHhccC--CCEEEEEch-HHHHHHHHHHHcCCccH-----H-----HHHHHHHHHHH
Confidence 33 567777755664 456788888887 999877543 11233445566666662 1 12333333445
Q ss_pred HcCCcEEe
Q 043137 372 QAGWGVMA 379 (445)
Q Consensus 372 ~~g~~~~~ 379 (445)
.+|-.+++
T Consensus 305 RAGAd~Ii 312 (322)
T PRK13384 305 RAGADLIV 312 (322)
T ss_pred HcCCCEEe
Confidence 56766655
No 236
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=26.62 E-value=34 Score=33.22 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCcccHHHHHHHHHHHHHcCCcEEecCCC--C---CChhhHHHHHHhhhcCCccccCCCC
Q 043137 355 NQIGSVTESIEAVRMSKQAGWGVMASHRS--G---ETEDTFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 355 ~~~GGit~a~~ia~~A~~~g~~~~~~~~~--~---et~~~~~~~la~a~~~~~~~~G~~~ 409 (445)
...|-+.++.+++.+|+.+|++..+.+.. + -+.-..-+|+-||++..-+-.-+|.
T Consensus 167 g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~Pi 226 (382)
T COG1103 167 GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPI 226 (382)
T ss_pred CCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCe
Confidence 56799999999999999999999877631 1 1222334677777766665555554
No 237
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.53 E-value=7.6e+02 Score=25.85 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=76.5
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECC-----------CCcCCHHHHHHHHHHhCCCceEE--eCc--c--ccc-----CH
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDP-----------FDQDDWEHYAKLTSEVGEKVQIV--GDD--L--LVT-----NP 335 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP-----------~~~~D~~~~~~L~~~~~~~vpI~--gde--~--~~~-----~~ 335 (445)
.++.++.++. .+.+++.++..||== +.+++++-++.+++..+ ++++. .-- . +.+ ..
T Consensus 22 ~~~t~dkl~i-a~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~-~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPI-LEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK-KTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHH-HHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC-CCEEEEEeccccccccccCchhhHH
Confidence 5677888876 567888999999974 56678888999988754 36652 110 0 000 12
Q ss_pred HHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE--ecCCCC-CChhhHHHHH---HhhhcCCccccCCCC
Q 043137 336 KRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM--ASHRSG-ETEDTFIADL---SVGLATGQIKTGAPC 409 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~--~~~~~~-et~~~~~~~l---a~a~~~~~~~~G~~~ 409 (445)
.++++.++. .+|.+.+=..-.- +.+..+++.+|+++|..+. ++.... -......+++ +...++..+.+-+..
T Consensus 100 ~~v~~A~~~-Gvd~irif~~lnd-~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~ 177 (448)
T PRK12331 100 SFVQKSVEN-GIDIIRIFDALND-VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMA 177 (448)
T ss_pred HHHHHHHHC-CCCEEEEEEecCc-HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 444555554 4788776543322 3578889999999997743 333221 1223333333 455567776655533
No 238
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=26.30 E-value=85 Score=29.96 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 346 TCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 346 a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
..|...++. +.|+..+.+++++.|++.|+++++-
T Consensus 38 ~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD 71 (316)
T PF00128_consen 38 PSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILD 71 (316)
T ss_dssp ESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ceeeecccc-ccchhhhhhhhhhccccccceEEEe
Confidence 467777886 6799999999999999999998653
No 239
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=26.18 E-value=97 Score=28.41 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
-|++-.++|.+. + +||+++-- +++|+++++.++.++..++.
T Consensus 132 pD~~lv~~l~~~-~--~pvIaEGr-i~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 132 PDFELVRELVQA-D--VPVIAEGR-IHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp HHHHHHHHHHHT-T--SEEEEESS---SHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHhC-C--CcEeecCC-CCCHHHHHHHHhcCCeEEEE
Confidence 378888888875 5 99988887 57899999999999877664
No 240
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=26.05 E-value=3.1e+02 Score=24.29 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=56.4
Q ss_pred EEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHH--hhhcCCc
Q 043137 325 IVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLS--VGLATGQ 402 (445)
Q Consensus 325 I~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la--~a~~~~~ 402 (445)
|+|.++-....+...+.++.-.+++-.-=++--=+...+.+.+.-|+..|+++++..-.+ ++||- +|...+-
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGg------AAHLPGmvAa~T~l 81 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGG------AAHLPGMVAAKTPL 81 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcc------hhhcchhhhhcCCC
Confidence 477776544555666667766666655444444468899999999999999998877322 36662 2222222
Q ss_pred cccCCCCCchhHHHHHHHHHHH
Q 043137 403 IKTGAPCRSERLAKYNQLLRIE 424 (445)
Q Consensus 403 ~~~G~~~~~e~~~k~n~ll~i~ 424 (445)
--+|-|-.+..+.=...|+.|=
T Consensus 82 PViGVPv~s~~L~GlDSL~SiV 103 (162)
T COG0041 82 PVIGVPVQSKALSGLDSLLSIV 103 (162)
T ss_pred CeEeccCccccccchHHHHHHh
Confidence 3355555554444444445443
No 241
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=25.97 E-value=2.2e+02 Score=27.83 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 311 HYAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
..+.++++.+ +|| =.|. ..+.+.+++.++.+ ++.|++|-+..- =|..+++++++|+++|+.+ -+|+
T Consensus 64 ~~~~~a~~~~--vPValHLDH--~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~ 136 (287)
T PF01116_consen 64 MVKAAAEEAS--VPVALHLDH--GKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGH 136 (287)
T ss_dssp HHHHHHHHST--SEEEEEEEE--E-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESB
T ss_pred HHHHHHHHcC--CCEEeeccc--CCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeee
Confidence 3566777777 887 5665 35789999999885 588999988642 3667899999999999876 4555
No 242
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=25.93 E-value=3.3e+02 Score=28.80 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=81.4
Q ss_pred cCHHHHHHHHHHhhccCCeeeEECCCC--cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 279 ISGDALKDLYKSFISDYPIVSIEDPFD--QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+|..+.-++ ++.-+.++.||=-.|- ++|+...+.+.++.+.+++|++-=......+.+...++. +|.+.+-.+-
T Consensus 172 ltekD~~di--~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~--~DgImIargD 247 (480)
T cd00288 172 LSEKDKADL--RFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEA--SDGIMVARGD 247 (480)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh--cCEEEECcch
Confidence 455553332 2233466777766663 467777777766654456664431112234455555554 8999987654
Q ss_pred cc---cHH----HHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHhhh--cCCccccCC-----CCCchhHH
Q 043137 357 IG---SVT----ESIEAVRMSKQAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERLA 415 (445)
Q Consensus 357 ~G---Git----~a~~ia~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~e~~~ 415 (445)
.| |+. -..++++.|+++|+++++..++.||.. +=..|+|-|. ++.-+.+.+ ....|-+.
T Consensus 248 Lg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~ 327 (480)
T cd00288 248 LGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVK 327 (480)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHH
Confidence 43 222 336688889999999999887777633 2345776665 555555422 22345555
Q ss_pred HHHHHHHH
Q 043137 416 KYNQLLRI 423 (445)
Q Consensus 416 k~n~ll~i 423 (445)
..++..+-
T Consensus 328 ~m~~I~~~ 335 (480)
T cd00288 328 AMARICLE 335 (480)
T ss_pred HHHHHHHH
Confidence 55554443
No 243
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=2.5e+02 Score=28.93 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhc---cCCeeeEECCCC-cCCHHHHHHHHHHhCCCceEEe--CcccccCHHHHHHHHhcCCCCEEEecc-
Q 043137 282 DALKDLYKSFIS---DYPIVSIEDPFD-QDDWEHYAKLTSEVGEKVQIVG--DDLLVTNPKRVEKAIKEKTCNALLLKV- 354 (445)
Q Consensus 282 ~~ai~~~~~~l~---~~~i~~iEdP~~-~~D~~~~~~L~~~~~~~vpI~g--de~~~~~~~~~~~~i~~~a~d~v~ik~- 354 (445)
.+++..+...+. .-+-.-|--++. +.++--|.+++++.+-.+-++- ++-. -..+++.+.+ ......|.+..
T Consensus 94 T~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~-~~~~~~~~~i-~~~Tklvais~v 171 (405)
T COG0520 94 TEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGL-LDLDALEKLI-TPKTKLVALSHV 171 (405)
T ss_pred hHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCC-cCHHHHHHhc-CCCceEEEEECc
Confidence 456655554332 222222333332 3578899999998653333322 4432 3467777644 45566666664
Q ss_pred -CCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 355 -NQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 355 -~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+..|.+++..+|+++|+++|..+++..
T Consensus 172 Sn~tG~~~pv~~I~~la~~~ga~v~VDa 199 (405)
T COG0520 172 SNVTGTVNPVKEIAELAHEHGALVLVDA 199 (405)
T ss_pred cccccccchHHHHHHHHHHcCCEEEEEC
Confidence 567999999999999999998887655
No 244
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.75 E-value=1.8e+02 Score=27.26 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCEEEeccC---CcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 336 KRVEKAIKEKTCNALLLKVN---QIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 336 ~~~~~~i~~~a~d~v~ik~~---~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+.++..++.+.++.||+.-- .--=...++++..+|+.+|+.+++..
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd 78 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAG 78 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeC
Confidence 44555666665789998532 22223456788889999999998855
No 245
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=25.62 E-value=5.8e+02 Score=24.15 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=50.4
Q ss_pred CCeeeEECCCCcCC--HHHHHHHHHHhCC-CceEEeCcccccCHHHHHHHHhc--CCCCEEEeccCCcccHHHHHHHHHH
Q 043137 295 YPIVSIEDPFDQDD--WEHYAKLTSEVGE-KVQIVGDDLLVTNPKRVEKAIKE--KTCNALLLKVNQIGSVTESIEAVRM 369 (445)
Q Consensus 295 ~~i~~iEdP~~~~D--~~~~~~L~~~~~~-~vpI~gde~~~~~~~~~~~~i~~--~a~d~v~ik~~~~GGit~a~~ia~~ 369 (445)
.++.++-.|-.... .+.|..|.+.... .+--+|= + ..+.+.+.++++. ...+++|+..+-+--- ....+...
T Consensus 111 iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-S-~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~ 187 (285)
T cd06660 111 IDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGV-S-NFSAEQLEEALAAAGVPPAVNQVEYNLLDRQ-AEEELLPY 187 (285)
T ss_pred eeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEe-e-CCCHHHHHHHHHhhCCCceEEecccCcccCc-hHHHHHHH
Confidence 45667777755432 3445444443221 1432332 1 2246778888877 7899999988755321 12278899
Q ss_pred HHHcCCcEEecC
Q 043137 370 SKQAGWGVMASH 381 (445)
Q Consensus 370 A~~~g~~~~~~~ 381 (445)
|+++|+.++...
T Consensus 188 ~~~~gi~v~~~~ 199 (285)
T cd06660 188 CREHGIGVIAYS 199 (285)
T ss_pred HHHcCcEEEEec
Confidence 999999975543
No 246
>PTZ00300 pyruvate kinase; Provisional
Probab=25.55 E-value=5.7e+02 Score=26.89 Aligned_cols=128 Identities=10% Similarity=0.118 Sum_probs=74.8
Q ss_pred ccCCeeeEECCCC--cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHH----HH
Q 043137 293 SDYPIVSIEDPFD--QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVT----ES 363 (445)
Q Consensus 293 ~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git----~a 363 (445)
-+.++.||==||- ++|....+++....+.+++|++-=......+.+...+ ..+|++.+-..-.| |+. --
T Consensus 157 ld~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~--~~~DgImVaRGDLgvei~~e~vp~~Q 234 (454)
T PTZ00300 157 VEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII--EESDGIMVARGDLGVEIPAEKVVVAQ 234 (454)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH--HhCCEEEEecchhhhhcChHHHHHHH
Confidence 3578888888884 3344444444433333466655422122334444555 67999998765433 122 34
Q ss_pred HHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHhhh--cCCccccCC-----CCCchhHHHHHHHHH
Q 043137 364 IEAVRMSKQAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERLAKYNQLLR 422 (445)
Q Consensus 364 ~~ia~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~e~~~k~n~ll~ 422 (445)
+++++.|+++|.++++..++.||.. +=..|+|-|. ++.-+.+.+ -...|-+.-.++..+
T Consensus 235 k~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~ 307 (454)
T PTZ00300 235 KILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICL 307 (454)
T ss_pred HHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHH
Confidence 6788899999999999998887643 2345776664 555555422 223455555555444
No 247
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.51 E-value=6.3e+02 Score=24.62 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcC--CcEEecCCCCCChh
Q 043137 311 HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAG--WGVMASHRSGETED 388 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g--~~~~~~~~~~et~~ 388 (445)
..++++++.+. .+|.-+ +.+.+++.+.++.++ |+|++|-+ ...+.++++...+..+ -.+.+-- +|....
T Consensus 172 av~~~r~~~~~-~kIeVE---v~~leea~~a~~aga-DiI~LDn~---~~e~l~~~v~~l~~~~~~~~~~lea-SGGI~~ 242 (278)
T PRK08385 172 AIRRAKEFSVY-KVVEVE---VESLEDALKAAKAGA-DIIMLDNM---TPEEIREVIEALKREGLRERVKIEV-SGGITP 242 (278)
T ss_pred HHHHHHHhCCC-CcEEEE---eCCHHHHHHHHHcCc-CEEEECCC---CHHHHHHHHHHHHhcCcCCCEEEEE-ECCCCH
Confidence 45666665432 333222 346888998887665 99999987 4677777777766644 2222222 233333
Q ss_pred hHHHHHHhhhcCCccccCCCC
Q 043137 389 TFIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~ 409 (445)
..+..+|- ++..++..|.+.
T Consensus 243 ~ni~~yA~-tGvD~Is~galt 262 (278)
T PRK08385 243 ENIEEYAK-LDVDVISLGALT 262 (278)
T ss_pred HHHHHHHH-cCCCEEEeChhh
Confidence 34444443 467777777764
No 248
>PRK05826 pyruvate kinase; Provisional
Probab=25.41 E-value=5e+02 Score=27.40 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=71.4
Q ss_pred cCHHHHHHHHHHhhccCCeeeEECCCC--cCCHHHHHHHHHHhCC-CceEEeCcccccCHHHHHHHHhcCCCCEEEeccC
Q 043137 279 ISGDALKDLYKSFISDYPIVSIEDPFD--QDDWEHYAKLTSEVGE-KVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~-~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+|..+.-+. ...+ +.++.||==|+- ++|....+++.+..+. ++.|+.-=......+.+...++. +|++.+-.+
T Consensus 171 lte~D~~~i-~~al-d~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~--~DgImIgrg 246 (465)
T PRK05826 171 LTEKDKADI-KFAA-EQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEA--SDGIMVARG 246 (465)
T ss_pred CChhhHHHH-HHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH--cCEEEECcc
Confidence 344443332 3333 578889988985 4566666666555443 45554331111224445555554 899996654
Q ss_pred Ccc---c----HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHhhh--cCCcccc
Q 043137 356 QIG---S----VTESIEAVRMSKQAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKT 405 (445)
Q Consensus 356 ~~G---G----it~a~~ia~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~ 405 (445)
-.| | ..-..++++.|+++|.++.+..++.||.. +=..|+|-|. ++.-+.+
T Consensus 247 DLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmL 312 (465)
T PRK05826 247 DLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVML 312 (465)
T ss_pred hhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEe
Confidence 332 1 22346788889999999998877666532 2345666665 5554444
No 249
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=25.07 E-value=1.2e+02 Score=28.69 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCc-eeeecccCCCCCCCCccCHHHHHHHHHHhhccCC---e--eeE-ECC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYP---I--VSI-EDP 303 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~---i--~~i-EdP 303 (445)
++++++-+.-|-+ -+-+.+|+--.. +... .|++-..+.. .+.+|++-+..+ .+++.+ | ..+ -|-
T Consensus 111 ~lI~~~a~~FGsQ-ciVvaIDakr~~--~g~~~~~~v~~~gGr--~~t~~d~~~Wa~----~~e~~GAGEIlLtsmD~DG 181 (256)
T COG0107 111 ELITEAADRFGSQ-CIVVAIDAKRVP--DGENGWYEVFTHGGR--EDTGLDAVEWAK----EVEELGAGEILLTSMDRDG 181 (256)
T ss_pred HHHHHHHHHhCCc-eEEEEEEeeecc--CCCCCcEEEEecCCC--cCCCcCHHHHHH----HHHHcCCceEEEeeecccc
Confidence 3455555444521 478889984210 1111 4554322211 224565555443 344444 2 222 222
Q ss_pred CCc-CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEec-cCCcccHHHHHHHHHHHHHcCCcE
Q 043137 304 FDQ-DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK-VNQIGSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 304 ~~~-~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik-~~~~GGit~a~~ia~~A~~~g~~~ 377 (445)
... -|++..+.++...+ +|+++.-- +.+++.|...+..+.+|++.-- +=..| .....++-.+-.++|+++
T Consensus 182 tk~GyDl~l~~~v~~~v~--iPvIASGG-aG~~ehf~eaf~~~~adAaLAAsiFH~~-~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 182 TKAGYDLELTRAVREAVN--IPVIASGG-AGKPEHFVEAFTEGKADAALAASIFHFG-EITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cccCcCHHHHHHHHHhCC--CCEEecCC-CCcHHHHHHHHHhcCccHHHhhhhhhcC-cccHHHHHHHHHHcCCCc
Confidence 322 48999999999998 99866654 5779999999988877765432 22222 223334444555666654
No 250
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=24.96 E-value=5.4e+02 Score=25.59 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEec--ccccccc------------CCc-eeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDV--AASEFYG------------SDK-TYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~--~a~~~~~------------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
.-++.++|+++.+.|++ ++.||-=. -++.||. .++ .|+.+.. +..++++....-
T Consensus 166 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~----------n~~eAlre~~~D 234 (320)
T cd04823 166 DGRIGAIREALDAEGFT-NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPA----------NSREALREVALD 234 (320)
T ss_pred hhHHHHHHHHHHHCCCC-CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 56788999999999974 66666321 1233442 112 6776632 345666553322
Q ss_pred hcc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHH
Q 043137 292 ISD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMS 370 (445)
Q Consensus 292 l~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A 370 (445)
+++ .++.++.=-++. ++-.+.+++++. +||++-..+ .-..=++...++++.|. . .-+++...--
T Consensus 235 i~EGAD~lMVKPal~Y--LDIi~~~k~~~~--lPvaaYqVS-GEYaMikaAa~~G~~d~-----~-----~~~~Esl~~i 299 (320)
T cd04823 235 IAEGADMVMVKPGMPY--LDIIRRVKDEFG--VPTFAYQVS-GEYAMLKAAAQNGWLDE-----D-----KVMLESLLAF 299 (320)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhcC--CCEEEEEcc-HHHHHHHHHHHcCCCcH-----H-----HHHHHHHHHH
Confidence 333 567777755654 567889999987 999887542 11223344555555553 1 1233334444
Q ss_pred HHcCCcEEe
Q 043137 371 KQAGWGVMA 379 (445)
Q Consensus 371 ~~~g~~~~~ 379 (445)
+.+|-.+++
T Consensus 300 kRAGAd~Ii 308 (320)
T cd04823 300 KRAGADGIL 308 (320)
T ss_pred HhcCCCEEe
Confidence 556777655
No 251
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=24.93 E-value=2e+02 Score=28.19 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 043137 335 PKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384 (445)
Q Consensus 335 ~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~ 384 (445)
.+-+.+.++.+. +++.=|+.-. ++.++.+++++|++.|+.++++++.-
T Consensus 81 ~e~~~~AL~aGk-hVl~EKPla~-t~~ea~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 81 AELALAALEAGK-HVLCEKPLAL-TLEEAEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred HHHHHHHHhcCC-EEEEcCCCCC-CHHHHHHHHHHHHHcCCceeeehhhh
Confidence 445556666554 7777777654 79999999999999999999999643
No 252
>PF11380 DUF3184: Protein of unknown function (DUF3184); InterPro: IPR021520 This eukaryotic family of proteins has no known function. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=24.67 E-value=5.6e+02 Score=27.72 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCccCHHHHHHHHHHhhcc-CC-eeeEECCCCcC-CHHHHHHHHHHhCCCceEEe---Cc-ccccCHHHHHHHHhcCCCC
Q 043137 276 SQKISGDALKDLYKSFISD-YP-IVSIEDPFDQD-DWEHYAKLTSEVGEKVQIVG---DD-LLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 276 ~~~~t~~~ai~~~~~~l~~-~~-i~~iEdP~~~~-D~~~~~~L~~~~~~~vpI~g---de-~~~~~~~~~~~~i~~~a~d 348 (445)
|.+++..++.+.++..|+. || +.|+|+--... ..+.+.++-..+= .+|+++ +| -.|.-..+++-.+....-.
T Consensus 431 Nagfs~~eaa~qLR~FL~~~FPtPv~LE~~~~g~a~~~~l~r~F~~LM-~LPvv~v~syeEg~CPLvRSL~~A~~~~~r~ 509 (691)
T PF11380_consen 431 NAGFSSAEAADQLRNFLHGLFPTPVYLEESAAGAAEEGALSRLFGDLM-ALPVVGVVSYEEGVCPLVRSLALAFAGHHRG 509 (691)
T ss_pred ccccCchHHHHHHHHHHHhhCCCCeEeeccCcccchhHHHHHHHhhhh-hccEEEEEeccccccHHHHHHHHhcccccCC
Confidence 4556666666667777764 66 88998554332 3344444444331 256533 33 3333344555555555667
Q ss_pred EEEeccCCcc---c--HHHHHHHHHHHHHcCCc
Q 043137 349 ALLLKVNQIG---S--VTESIEAVRMSKQAGWG 376 (445)
Q Consensus 349 ~v~ik~~~~G---G--it~a~~ia~~A~~~g~~ 376 (445)
+|++.+.+.| | +-+++.-...+...-++
T Consensus 510 ~V~V~v~~~~~g~g~~l~e~Ra~l~h~~~samp 542 (691)
T PF11380_consen 510 GVRVSVEQHGFGEGATLREARADLRHRVVSAMP 542 (691)
T ss_pred eEEEEeCCccccccccHHHHHHHhcccchhccc
Confidence 8999999888 3 44555444444333344
No 253
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.38 E-value=2.5e+02 Score=22.87 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=40.1
Q ss_pred CHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHc---CCcEEecCC
Q 043137 334 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQA---GWGVMASHR 382 (445)
Q Consensus 334 ~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~---g~~~~~~~~ 382 (445)
.++++.+.+.....|+|.+..+....+..+.++++..++. ++.+++++.
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 4778888888889999999988777888889999988887 466777774
No 254
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=24.28 E-value=2.9e+02 Score=27.09 Aligned_cols=65 Identities=6% Similarity=0.108 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 043137 312 YAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 312 ~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~---GGit~a~~ia~~A~~~g~~~--~~~~ 381 (445)
...++++.+ +|| =.|.. .+.+.+++.++.+ ++.|++|-+.. -=|..+++++++|+++|+.+ -+||
T Consensus 66 ~~~~a~~~~--VPValHLDHg--~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ 137 (286)
T PRK12738 66 CSAYSTTYN--MPLALHLDHH--ESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGR 137 (286)
T ss_pred HHHHHHHCC--CCEEEECCCC--CCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 455566666 665 56763 4789999999875 58999998764 23667899999999999876 4555
No 255
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=24.28 E-value=5.6e+02 Score=23.51 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEe------C--ccccc-CHHHHHHHHhcCCCCEEEec
Q 043137 283 ALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG------D--DLLVT-NPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 283 ~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~g------d--e~~~~-~~~~~~~~i~~~a~d~v~ik 353 (445)
...+. .+.+.+.++..++ + ..++.++.+++.+. +||++ + +..++ +.++++.+.+.++ |++.++
T Consensus 28 ~i~~~-a~~~~~~G~~~~~--~--~~~~~~~~i~~~~~--iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGa-d~I~~~ 99 (219)
T cd04729 28 IMAAM-ALAAVQGGAVGIR--A--NGVEDIRAIRARVD--LPIIGLIKRDYPDSEVYITPTIEEVDALAAAGA-DIIALD 99 (219)
T ss_pred HHHHH-HHHHHHCCCeEEE--c--CCHHHHHHHHHhCC--CCEEEEEecCCCCCCceeCCCHHHHHHHHHcCC-CEEEEe
Confidence 34443 4556667887777 3 56788888888766 89864 1 11111 2346666666655 689888
Q ss_pred cCCcccH--HHHHHHHHHHHHcC-CcEEecC
Q 043137 354 VNQIGSV--TESIEAVRMSKQAG-WGVMASH 381 (445)
Q Consensus 354 ~~~~GGi--t~a~~ia~~A~~~g-~~~~~~~ 381 (445)
..-...- .+..++.+.+++.+ +.++++.
T Consensus 100 ~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v 130 (219)
T cd04729 100 ATDRPRPDGETLAELIKRIHEEYNCLLMADI 130 (219)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC
Confidence 6543211 25556776777776 7766543
No 256
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=24.11 E-value=3.2e+02 Score=26.80 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=49.6
Q ss_pred cccCHHHHHHHHhcCCCCEEEeccCCcccHH------HHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccc
Q 043137 331 LVTNPKRVEKAIKEKTCNALLLKVNQIGSVT------ESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 331 ~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit------~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.+|+|++..++++.-.+|.+-+-++.+=|+. +.-++..+.+..++++++++.+|-+.+. ..-++..|..-++
T Consensus 154 ~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~--~~~ai~~GI~KiN 231 (286)
T PRK08610 154 IYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKD--IQKAIPFGTAKIN 231 (286)
T ss_pred ccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHH--HHHHHHCCCeEEE
Confidence 3688999999999989999999987665555 4455566667779998776655433222 2223444444455
Q ss_pred cCC
Q 043137 405 TGA 407 (445)
Q Consensus 405 ~G~ 407 (445)
++.
T Consensus 232 i~T 234 (286)
T PRK08610 232 VNT 234 (286)
T ss_pred ecc
Confidence 533
No 257
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.09 E-value=3e+02 Score=26.95 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 311 HYAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
....++++.+ +|| =.|.. .+.+.+.+.++.+ ++.|++|-+..- =+-.+++++++|+++|+.+ -+||
T Consensus 63 ~~~~~a~~~~--VPValHLDHg--~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~ 135 (282)
T TIGR01858 63 LCSAASTTYN--MPLALHLDHH--ESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGR 135 (282)
T ss_pred HHHHHHHHCC--CCEEEECCCC--CCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3455566666 666 56653 5789999999986 699999988642 2566899999999999876 4555
No 258
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.96 E-value=6.1e+02 Score=24.25 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=36.8
Q ss_pred ceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 323 VQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 323 vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
+||+.|-. +++-++..++.+ ++++|= + .|.. .-++..+++.+|..+++-|+.
T Consensus 76 ~plsiDT~---~~~vi~~al~~G-~~iINs-i---s~~~-~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 76 VPISVDTY---RAEVARAALEAG-ADIIND-V---SGGQ-DPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CeEEEeCC---CHHHHHHHHHcC-CCEEEE-C---CCCC-CchhHHHHHHcCCcEEEEeCC
Confidence 99999943 588888899884 666551 1 1222 346777888999999888854
No 259
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=23.89 E-value=4.1e+02 Score=26.75 Aligned_cols=95 Identities=12% Similarity=0.214 Sum_probs=68.0
Q ss_pred ccCHHHHHHHHHHhhccCC---eeeE-ECCCCcCCHHHHHHHHHH-hCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 278 KISGDALKDLYKSFISDYP---IVSI-EDPFDQDDWEHYAKLTSE-VGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~---i~~i-EdP~~~~D~~~~~~L~~~-~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
.+++.+..+.| +..+ |..+ |+.+-..+++.++++++. ++ +||.--|+. -++.++...-. -.+|+|.+
T Consensus 138 ~~dp~~iA~~Y----e~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~--lPvLrKDFI-ID~yQI~eAr~-~GADAVLL 209 (338)
T PLN02460 138 NFDPVEIAQAY----EKGGAACLSVLTDEKYFQGSFENLEAIRNAGVK--CPLLCKEFI-VDAWQIYYARS-KGADAILL 209 (338)
T ss_pred CCCHHHHHHHH----HhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCC--CCEeecccc-CCHHHHHHHHH-cCCCcHHH
Confidence 45677655444 3343 5544 667778899999999998 87 999877774 45777766533 35688887
Q ss_pred ccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 353 KVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 353 k~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
=+.-.+ -.+..+..++|++.|+.+.+--
T Consensus 210 IaaiL~-~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 210 IAAVLP-DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHhCC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 766554 3578889999999999986643
No 260
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=23.70 E-value=3.8e+02 Score=26.23 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~---GGit~a~~ia~~A~~~g~~~ 377 (445)
...+.+.++.+..+||+--=-...+.+.+.+.++.+. +.|++|-+.. --|..+++++++|+++|+.+
T Consensus 65 ~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf-tSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~V 134 (285)
T PRK07709 65 AMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGF-TSVMIDASHHPFEENVETTKKVVEYAHARNVSV 134 (285)
T ss_pred HHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 261
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=23.26 E-value=7.6e+02 Score=24.66 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEE---ecccccccc------------CCc-eeeecccCCCCCCCCccCHHHHHHHHHH
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGM---DVAASEFYG------------SDK-TYDLNFKEENNDGSQKISGDALKDLYKS 290 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~v---D~~a~~~~~------------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~ 290 (445)
.-++.++|+++.+.|+. ++.||- -. ++.+|. +++ .|+.++. +..|+++....
T Consensus 171 DGrV~aIR~aLd~~g~~-~v~ImSYsaKy-aS~fYGPFRdAa~Sap~fgDrktYQmdp~----------N~~EAlre~~~ 238 (324)
T PF00490_consen 171 DGRVGAIREALDEAGFS-DVPIMSYSAKY-ASAFYGPFRDAAGSAPKFGDRKTYQMDPA----------NRREALREAEL 238 (324)
T ss_dssp TTHHHHHHHHHHHTTCT-TSEEEEEEEEB--SSTGHHHHHHHT-HHSSSTSTTTSB-TT-----------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC-CccEEechHHH-hhhhhHhHHHHhcCCccccCcccccCCCc----------cHHHHHHHhhh
Confidence 35788999999999874 777763 33 344552 122 6776532 45677765433
Q ss_pred hhcc-CCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCC
Q 043137 291 FISD-YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 291 ~l~~-~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d 348 (445)
-+++ .++.++.=-++. ++-.+++++++. +|+++-..+ .-..-++...++++.|
T Consensus 239 D~~EGAD~lMVKPal~Y--LDIi~~~k~~~~--~P~~aYqVS-GEYaMikaAa~~G~~d 292 (324)
T PF00490_consen 239 DIEEGADILMVKPALPY--LDIIRRVKERFD--LPVAAYQVS-GEYAMIKAAAQNGWID 292 (324)
T ss_dssp HHHTT-SEEEEESSGGG--HHHHHHHHHHCT--S-EEEEETH-HHHHHHHHHHHTTSS-
T ss_pred hHhhCCCEEEeecchhH--HHHHHHHHHhcC--CCEEEEEeh-HHHHHHHHHHHCCCcc
Confidence 3333 568888744554 567899999998 999887643 1123344555566655
No 262
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=23.04 E-value=5.3e+02 Score=25.45 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 043137 309 WEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388 (445)
Q Consensus 309 ~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~ 388 (445)
.+.+++++++.+. .+|.-+ +.+.+++.+.++.+ +|+|++|-+.. .++++++.+.+. .+.+.++ |....
T Consensus 196 ~~av~~~r~~~~~-~kIeVE---v~sleea~ea~~~g-aDiI~LDn~s~---e~~~~av~~~~~-~~~ieaS---GGI~~ 263 (296)
T PRK09016 196 RQAVEKAFWLHPD-VPVEVE---VENLDELDQALKAG-ADIIMLDNFTT---EQMREAVKRTNG-RALLEVS---GNVTL 263 (296)
T ss_pred HHHHHHHHHhCCC-CCEEEE---eCCHHHHHHHHHcC-CCEEEeCCCCh---HHHHHHHHhhcC-CeEEEEE---CCCCH
Confidence 3567777777653 455322 45689999998866 59999998864 556666655443 3444443 33344
Q ss_pred hHHHHHHhhhcCCccccCCCCCch
Q 043137 389 TFIADLSVGLATGQIKTGAPCRSE 412 (445)
Q Consensus 389 ~~~~~la~a~~~~~~~~G~~~~~e 412 (445)
..+..+|- ++..++..|.+.-+.
T Consensus 264 ~ni~~yA~-tGVD~Is~galthsa 286 (296)
T PRK09016 264 ETLREFAE-TGVDFISVGALTKHV 286 (296)
T ss_pred HHHHHHHh-cCCCEEEeCccccCC
Confidence 44555544 578888888876443
No 263
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=23.01 E-value=6.9e+02 Score=24.14 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhcc-CC-ee--eE--ECCC
Q 043137 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISD-YP-IV--SI--EDPF 304 (445)
Q Consensus 231 ~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~-~~-i~--~i--EdP~ 304 (445)
+.++++++.-|. ..+.+.+|+.. +++ .|.+..++ |. ....+++.+++ .++.+. .+ +. -| +--+
T Consensus 123 ~~v~~~~~~~G~-~~IvvsiD~k~----~~g-~~~Va~~G-W~-~~t~~~~~e~~---~~~~~~g~~eii~TdI~rDGtl 191 (262)
T PLN02446 123 ERLKDLVRLVGK-QRLVLDLSCRK----KDG-RYYVVTDR-WQ-KFSDLAVDEET---LEFLAAYCDEFLVHGVDVEGKR 191 (262)
T ss_pred HHHHHHHHHhCC-CCEEEEEEEEe----cCC-CEEEEECC-Cc-ccCCCCHHHHH---HHHHHhCCCEEEEEEEcCCCcc
Confidence 455666666562 27999999941 112 23332111 10 11344555543 222221 22 22 22 2223
Q ss_pred CcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC
Q 043137 305 DQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK 345 (445)
Q Consensus 305 ~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~ 345 (445)
.--|++.+++|++.+. +||++.-- +++.+|+.++.+.+
T Consensus 192 ~G~d~el~~~l~~~~~--ipVIASGG-v~sleDi~~L~~~g 229 (262)
T PLN02446 192 LGIDEELVALLGEHSP--IPVTYAGG-VRSLDDLERVKVAG 229 (262)
T ss_pred cCCCHHHHHHHHhhCC--CCEEEECC-CCCHHHHHHHHHcC
Confidence 4458999999999988 88732222 46799999998764
No 264
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.92 E-value=3.7e+02 Score=26.31 Aligned_cols=75 Identities=9% Similarity=0.220 Sum_probs=49.8
Q ss_pred cccCHHHHHHHHhcCCCCEEEeccCCcccHH------HHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHhhhcCCccc
Q 043137 331 LVTNPKRVEKAIKEKTCNALLLKVNQIGSVT------ESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIK 404 (445)
Q Consensus 331 ~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit------~a~~ia~~A~~~g~~~~~~~~~~et~~~~~~~la~a~~~~~~~ 404 (445)
.+|+|+++.++++.-.+|.+-+-++.+=|+. +.-.+..+.+.-++++++++.++-+.+. ..-|+..+..-++
T Consensus 153 ~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~--~~kai~~Gi~KiN 230 (284)
T PRK12737 153 MYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDED--VKKAISLGICKVN 230 (284)
T ss_pred cCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHH--HHHHHHCCCeEEE
Confidence 3688999999999999999999987765554 3445555666678998776655533322 2223444555555
Q ss_pred cCC
Q 043137 405 TGA 407 (445)
Q Consensus 405 ~G~ 407 (445)
.+.
T Consensus 231 i~T 233 (284)
T PRK12737 231 VAT 233 (284)
T ss_pred eCc
Confidence 644
No 265
>PRK08185 hypothetical protein; Provisional
Probab=22.88 E-value=3.9e+02 Score=26.16 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE
Q 043137 312 YAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 312 ~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~ 377 (445)
...+.++.+ +|| -.|.. .+.+.+++.++.+ ++.|++|-+..- =+..+++++.+|+.+|+.+
T Consensus 60 ~~~~a~~~~--vPV~lHLDHg--~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 60 VRERAKRSP--VPFVIHLDHG--ATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHCC--CCEEEECCCC--CCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 344555555 665 56653 4688999999876 588999977642 3556788889999999876
No 266
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.84 E-value=9.1e+02 Score=25.46 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=70.1
Q ss_pred cCHHHHHHHHHHhhccCCe--eeEECCCCcCCHHHHHHHHHHh----CCCceEEe----CcccccCHHHHHHHHhcCCCC
Q 043137 279 ISGDALKDLYKSFISDYPI--VSIEDPFDQDDWEHYAKLTSEV----GEKVQIVG----DDLLVTNPKRVEKAIKEKTCN 348 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i--~~iEdP~~~~D~~~~~~L~~~~----~~~vpI~g----de~~~~~~~~~~~~i~~~a~d 348 (445)
.+++..++.+..+.+++++ .+|.|....-+.+-+.+|.+.+ +.++.... +.. ..+ .++.+.+..-.+.
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d-~ell~~l~~aG~~ 299 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD-ADILHLYRRAGLV 299 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC-HHHHHHHHHhCCc
Confidence 4777777777766666664 4555543333444455555443 11243322 221 123 3444555544556
Q ss_pred EEEecc-----------CCcccHHHHHHHHHHHHHcCCcEE----ecCCCCCChhh--HHHHHHhhhcCCcccc
Q 043137 349 ALLLKV-----------NQIGSVTESIEAVRMSKQAGWGVM----ASHRSGETEDT--FIADLSVGLATGQIKT 405 (445)
Q Consensus 349 ~v~ik~-----------~~~GGit~a~~ia~~A~~~g~~~~----~~~~~~et~~~--~~~~la~a~~~~~~~~ 405 (445)
.+.+-+ .|-.+.....+.++.++++|+.+. +|- .+||..+ ...+++..++..++.+
T Consensus 300 ~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~-P~et~e~~~~t~~~~~~l~~~~~~~ 372 (497)
T TIGR02026 300 HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF-ENETDETFEETYRQLLDWDPDQANW 372 (497)
T ss_pred EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC-CCCCHHHHHHHHHHHHHcCCCceEE
Confidence 666533 456678889999999999999653 332 4676544 3456666666555443
No 267
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=22.76 E-value=3e+02 Score=27.80 Aligned_cols=67 Identities=9% Similarity=0.136 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCceE--EeCcccccC--HHHHHHHHhcC----------CCCEEEeccCCccc---HHHHHHHHHHHHHc
Q 043137 311 HYAKLTSEVGEKVQI--VGDDLLVTN--PKRVEKAIKEK----------TCNALLLKVNQIGS---VTESIEAVRMSKQA 373 (445)
Q Consensus 311 ~~~~L~~~~~~~vpI--~gde~~~~~--~~~~~~~i~~~----------a~d~v~ik~~~~GG---it~a~~ia~~A~~~ 373 (445)
-...++++.+ +|| =.|.. ++ .+.+++.++.+ .++.|++|-+..-= |..+++++++|+.+
T Consensus 83 ~v~~~A~~~~--VPValHLDHg--~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~ 158 (350)
T PRK09197 83 HVHEVAEHYG--VPVILHTDHC--AKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKA 158 (350)
T ss_pred HHHHHHHHCC--CCEEEECCCC--CCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3455566666 676 45653 34 56666776654 38889999887643 67789999999999
Q ss_pred CCcE--EecC
Q 043137 374 GWGV--MASH 381 (445)
Q Consensus 374 g~~~--~~~~ 381 (445)
|+.+ -+||
T Consensus 159 GvsVEaELG~ 168 (350)
T PRK09197 159 GMTLEIELGV 168 (350)
T ss_pred CCEEEEEEec
Confidence 9887 3455
No 268
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=22.65 E-value=3.3e+02 Score=25.98 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC------CcccHH-----HHHHHHHHHHHcCCc
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN------QIGSVT-----ESIEAVRMSKQAGWG 376 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~------~~GGit-----~a~~ia~~A~~~g~~ 376 (445)
+.+...+|.+.-- .--|+|-- .+.+|+-++++++.-. +-+.+.+. .+.|.. +..+.+..-+..|+.
T Consensus 86 s~~~v~~ll~~G~-~rViiGt~-av~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~ 162 (241)
T COG0106 86 SLEDVEALLDAGV-ARVIIGTA-AVKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA 162 (241)
T ss_pred CHHHHHHHHHCCC-CEEEEecc-eecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC
Confidence 5555555555321 12334443 3567777777766554 44443332 122222 233444444555666
Q ss_pred EEecCCC------CCChhhHHHHHHhhhcCCccccCCCCCch
Q 043137 377 VMASHRS------GETEDTFIADLSVGLATGQIKTGAPCRSE 412 (445)
Q Consensus 377 ~~~~~~~------~et~~~~~~~la~a~~~~~~~~G~~~~~e 412 (445)
-.+-+.. ...+......|+-+...+.+--|+.++.+
T Consensus 163 ~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~ 204 (241)
T COG0106 163 HILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLD 204 (241)
T ss_pred eEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHH
Confidence 6555521 11233456677777777777788876544
No 269
>smart00642 Aamy Alpha-amylase domain.
Probab=22.58 E-value=83 Score=28.00 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.9
Q ss_pred CCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 043137 347 CNALLLKVNQIGSVTESIEAVRMSKQAGWGVMAS 380 (445)
Q Consensus 347 ~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~ 380 (445)
.|...++. +.|+..+.+++++.|+++|+++++-
T Consensus 57 ~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 57 SDYKQIDP-RFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred cccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34444443 6799999999999999999998653
No 270
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=22.55 E-value=2.7e+02 Score=26.99 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCC------C--CC---hhhHHHHHHhhhcCCccccCCCCCch
Q 043137 360 VTESIEAVRMSKQAGWGVMASHRS------G--ET---EDTFIADLSVGLATGQIKTGAPCRSE 412 (445)
Q Consensus 360 it~a~~ia~~A~~~g~~~~~~~~~------~--et---~~~~~~~la~a~~~~~~~~G~~~~~e 412 (445)
|.++-++...|+.+|+++++-... . +. ....+++++.-+++.++|...+...|
T Consensus 129 i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e 192 (265)
T COG1830 129 IENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPE 192 (265)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChH
Confidence 455666777788899998663311 0 01 13456778888888888876665443
No 271
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.50 E-value=3.9e+02 Score=25.83 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
...+++++..+...+ ++=| +.+.+++.+.++.+ +|+++++... +.+..++..+... .+++...+. ....
T Consensus 170 ~~v~~~r~~~~~~~~-Igve--v~s~eea~~A~~~g-aDyI~ld~~~---~e~l~~~~~~~~~-~ipi~AiGG---I~~~ 238 (268)
T cd01572 170 EAVRRARAAAPFTLK-IEVE--VETLEQLKEALEAG-ADIIMLDNMS---PEELREAVALLKG-RVLLEASGG---ITLE 238 (268)
T ss_pred HHHHHHHHhCCCCCe-EEEE--ECCHHHHHHHHHcC-CCEEEECCcC---HHHHHHHHHHcCC-CCcEEEECC---CCHH
Confidence 456777777653334 3443 45688888887654 6999999875 4455555544332 577655442 2333
Q ss_pred HHHHHHhhhcCCccccCCCC
Q 043137 390 FIADLSVGLATGQIKTGAPC 409 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~ 409 (445)
.+.+++- .++..+-.|.+.
T Consensus 239 ni~~~a~-~Gvd~Iav~sl~ 257 (268)
T cd01572 239 NIRAYAE-TGVDYISVGALT 257 (268)
T ss_pred HHHHHHH-cCCCEEEEEeee
Confidence 3455543 466777766654
No 272
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=22.47 E-value=4.5e+02 Score=26.56 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 321 EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 321 ~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.++-|+.|+... ..+++...++...+++...++...-+.....+.++.+++++..++++=.
T Consensus 23 ~r~livtd~~~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG 83 (374)
T cd08183 23 RRVLLVTGASSL-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIG 83 (374)
T ss_pred CcEEEEECCchH-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEec
Confidence 346667766543 3556666676666666665554455678899999999999999988774
No 273
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.25 E-value=4.3e+02 Score=24.71 Aligned_cols=99 Identities=15% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCCCeEEEEecccc-ccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCee-eEECCCC----
Q 043137 232 LLNTAIAKAGYTGKVVIGMDVAAS-EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIV-SIEDPFD---- 305 (445)
Q Consensus 232 ~l~~av~~~g~~~~i~l~vD~~a~-~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~-~iEdP~~---- 305 (445)
.+.+..+..|. ..+.+.+|+... ..+.++ |.. ....++.++++. +.++++. +|=--+.
T Consensus 111 ~l~~~~~~~g~-~~ivvslD~~~g~~v~~~g--w~~---------~~~~~~~~~~~~----~~~~g~~~ii~tdi~~dGt 174 (229)
T PF00977_consen 111 LLEELAERYGS-QRIVVSLDARDGYKVATNG--WQE---------SSGIDLEEFAKR----LEELGAGEIILTDIDRDGT 174 (229)
T ss_dssp HHHHHHHHHGG-GGEEEEEEEEETEEEEETT--TTE---------EEEEEHHHHHHH----HHHTT-SEEEEEETTTTTT
T ss_pred HHHHHHHHcCc-ccEEEEEEeeeceEEEecC--ccc---------cCCcCHHHHHHH----HHhcCCcEEEEeeccccCC
Confidence 34455555452 179999999643 222111 110 123455665543 3344422 2222222
Q ss_pred --cCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEE
Q 043137 306 --QDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALL 351 (445)
Q Consensus 306 --~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ 351 (445)
--|++.+++|++.++ +|+ +++- +++.+|++++.+.+. +.+.
T Consensus 175 ~~G~d~~~~~~l~~~~~--~~viasGG--v~~~~Dl~~l~~~G~-~gvi 218 (229)
T PF00977_consen 175 MQGPDLELLKQLAEAVN--IPVIASGG--VRSLEDLRELKKAGI-DGVI 218 (229)
T ss_dssp SSS--HHHHHHHHHHHS--SEEEEESS----SHHHHHHHHHTTE-CEEE
T ss_pred cCCCCHHHHHHHHHHcC--CCEEEecC--CCCHHHHHHHHHCCC-cEEE
Confidence 248899999999997 887 4443 467999999987766 4443
No 274
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=22.19 E-value=7.1e+02 Score=24.79 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEec--ccccccc------------CCc-eeeecccCCCCCCCCccCHHHHHHHHHHh
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDV--AASEFYG------------SDK-TYDLNFKEENNDGSQKISGDALKDLYKSF 291 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~--~a~~~~~------------~~~-~y~~~~~~~~~~~~~~~t~~~ai~~~~~~ 291 (445)
.-++.++|+++.+.|+..++.||-=. -++.+|. .++ .|+.++. +..++++....-
T Consensus 165 DGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~----------n~~eAlre~~~D 234 (320)
T cd04824 165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPG----------ARGLALRAVERD 234 (320)
T ss_pred ccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCc----------CHHHHHHHHHhh
Confidence 45788999999999982267776321 1233442 112 6776532 345676553322
Q ss_pred hcc-CCeeeEECCCCcCCHHHHHHHHHHh-CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHH
Q 043137 292 ISD-YPIVSIEDPFDQDDWEHYAKLTSEV-GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRM 369 (445)
Q Consensus 292 l~~-~~i~~iEdP~~~~D~~~~~~L~~~~-~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~ 369 (445)
+++ .++.++.=-++. ++-.+++++++ . +||++-..+ .-..-++...++++.|- . .-+++...-
T Consensus 235 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~~--~PvaaYqVS-GEYaMikaAa~~G~iDe-----~-----~~~~Esl~~ 299 (320)
T cd04824 235 VSEGADMIMVKPGTPY--LDIVREAKDKHPD--LPLAVYHVS-GEYAMLHAAAEAGAFDL-----K-----RAVLEAMTG 299 (320)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhccC--CCEEEEEcc-HHHHHHHHHHHcCCCcH-----H-----HHHHHHHHH
Confidence 333 567777755654 56789999999 6 999877643 11233445666666662 1 223444444
Q ss_pred HHHcCCcEEe
Q 043137 370 SKQAGWGVMA 379 (445)
Q Consensus 370 A~~~g~~~~~ 379 (445)
-+.+|-.+++
T Consensus 300 ikRAGAd~Ii 309 (320)
T cd04824 300 FRRAGADIII 309 (320)
T ss_pred HHhcCCCEEE
Confidence 5566777655
No 275
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=22.17 E-value=7.8e+02 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=29.6
Q ss_pred CCCCcCCH----HHHHHHHHHhCCCceEEeCcccc-cCHHHHHHHHhcCCCCEEEec
Q 043137 302 DPFDQDDW----EHYAKLTSEVGEKVQIVGDDLLV-TNPKRVEKAIKEKTCNALLLK 353 (445)
Q Consensus 302 dP~~~~D~----~~~~~L~~~~~~~vpI~gde~~~-~~~~~~~~~i~~~a~d~v~ik 353 (445)
+|-.+.|+ +.++.|++.++ +||+.-+.-. .+.+.++.+.+ -.+|+|.+.
T Consensus 156 ~~~~~~df~~~~~~i~~l~~~~~--vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~vs 209 (326)
T cd02811 156 QPEGDRDFRGWLERIEELVKALS--VPVIVKEVGFGISRETAKRLAD-AGVKAIDVA 209 (326)
T ss_pred CCCCCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 34445567 45667777777 8986654311 35666655554 457887764
No 276
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=21.89 E-value=3.1e+02 Score=25.39 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcC-CCCEEEeccCC-----ccc----HHHHHHHHHHHHHcCCcE
Q 043137 308 DWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEK-TCNALLLKVNQ-----IGS----VTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 308 D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~-a~d~v~ik~~~-----~GG----it~a~~ia~~A~~~g~~~ 377 (445)
+.+..+++... +-...++|... ..+++.++++.+.- ..=.+.+|+-. .|. -.+..+.+...+..|..-
T Consensus 85 ~~ed~~~~~~~-Ga~~vilg~~~-l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ 162 (233)
T PRK00748 85 SLETVEALLDA-GVSRVIIGTAA-VKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKA 162 (233)
T ss_pred CHHHHHHHHHc-CCCEEEECchH-HhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCE
Confidence 45555555543 21133456654 35566666655531 11223444310 111 123356666777777774
Q ss_pred EecCCC-C-----CChhhHHHHHHhhhcCCccccCCCCCchhHH
Q 043137 378 MASHRS-G-----ETEDTFIADLSVGLATGQIKTGAPCRSERLA 415 (445)
Q Consensus 378 ~~~~~~-~-----et~~~~~~~la~a~~~~~~~~G~~~~~e~~~ 415 (445)
++-|.. . ......+..+.-.+..+.+-.|+....+.+.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~ 206 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIK 206 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH
Confidence 454521 1 1122344455444456777777776655553
No 277
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.83 E-value=7.8e+02 Score=24.72 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=39.3
Q ss_pred HHHhhccCCeeeEECCCCcCCHHHHHHHHHHhC-CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHH
Q 043137 288 YKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVG-EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEA 366 (445)
Q Consensus 288 ~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~-~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i 366 (445)
+.+.+++.++.|+=-||+....+-+.. ++ .-.-|.-.|. +...=++.+...+- -+.+..+-+ .+++..++
T Consensus 95 Lke~a~~~Gi~~~SSPfd~~svd~l~~----~~~~ayKIaS~E~--~~~plik~iA~~~k--PiIlSTGma-~~~ei~~a 165 (347)
T COG2089 95 LKEYARKRGIIFFSSPFDLTAVDLLES----LNPPAYKIASGEI--NDLPLIKYIAKKGK--PIILSTGMA-TIEEIEEA 165 (347)
T ss_pred HHHHHHHcCeEEEecCCCHHHHHHHHh----cCCCeEEecCccc--cChHHHHHHHhcCC--CEEEEcccc-cHHHHHHH
Confidence 366778889999999997544333332 22 0112333332 23333333333222 333333332 45555555
Q ss_pred HHHHHHcCCc
Q 043137 367 VRMSKQAGWG 376 (445)
Q Consensus 367 a~~A~~~g~~ 376 (445)
++.++++|.+
T Consensus 166 v~~~r~~g~~ 175 (347)
T COG2089 166 VAILRENGNP 175 (347)
T ss_pred HHHHHhcCCC
Confidence 6666666555
No 278
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=21.78 E-value=7.2e+02 Score=23.84 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeccccccccCCceeeecccCCCCCCCCccCHHHHHHHHHHhhccCCeeeEECCCCc
Q 043137 227 KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQ 306 (445)
Q Consensus 227 ~~~l~~l~~av~~~g~~~~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~~~~~t~~~ai~~~~~~l~~~~i~~iEdP~~~ 306 (445)
++.++.+++..++.| +.+..+++ +.. .++++.+.+ ++.+|= -...
T Consensus 75 ~~gl~~l~~~~~~~G----l~~~t~~~--------------------------d~~-~~~~l~~~~---d~lkI~-s~~~ 119 (260)
T TIGR01361 75 EEGLKLLRRAADEHG----LPVVTEVM--------------------------DPR-DVEIVAEYA---DILQIG-ARNM 119 (260)
T ss_pred HHHHHHHHHHHHHhC----CCEEEeeC--------------------------Chh-hHHHHHhhC---CEEEEC-cccc
Confidence 677888888877765 44555662 112 233333332 233331 2334
Q ss_pred CCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHh----cCCCCEEEecc--CCc-cc---HHHHHHHHHHHHHcCCc
Q 043137 307 DDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIK----EKTCNALLLKV--NQI-GS---VTESIEAVRMSKQAGWG 376 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~----~~a~d~v~ik~--~~~-GG---it~a~~ia~~A~~~g~~ 376 (445)
.+.+-+.++. +++ .||.-..-...+++++...++ .+.-+++.+.- +-. +. ..++.-+..+.+.++++
T Consensus 120 ~n~~LL~~~a-~~g--kPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~p 196 (260)
T TIGR01361 120 QNFELLKEVG-KQG--KPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLP 196 (260)
T ss_pred cCHHHHHHHh-cCC--CcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCC
Confidence 5555555554 445 666443332225777765433 34445555432 111 11 34567777777888999
Q ss_pred EEe--cCCCCCCh-hhHHHHHHhhhcCC
Q 043137 377 VMA--SHRSGETE-DTFIADLSVGLATG 401 (445)
Q Consensus 377 ~~~--~~~~~et~-~~~~~~la~a~~~~ 401 (445)
+.+ +|..+..+ ....+-.|+++|+.
T Consensus 197 V~~ds~Hs~G~r~~~~~~~~aAva~Ga~ 224 (260)
T TIGR01361 197 IIVDPSHAAGRRDLVIPLAKAAIAAGAD 224 (260)
T ss_pred EEEcCCCCCCccchHHHHHHHHHHcCCC
Confidence 988 66555222 22344557777776
No 279
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=21.75 E-value=1.8e+02 Score=26.65 Aligned_cols=47 Identities=19% Similarity=0.090 Sum_probs=20.1
Q ss_pred CHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 334 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 334 ~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
+.+++..+++. .+|+|-+|-+.---...+.++....+..+..+|..+
T Consensus 53 T~~ev~~l~~a-GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADi 99 (192)
T PF04131_consen 53 TLKEVDALAEA-GADIIALDATDRPRPETLEELIREIKEKYQLVMADI 99 (192)
T ss_dssp SHHHHHHHHHC-T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-
T ss_pred CHHHHHHHHHc-CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeec
Confidence 44555555543 356666665422222444445555555554444433
No 280
>PRK09206 pyruvate kinase; Provisional
Probab=21.65 E-value=7.6e+02 Score=26.07 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=81.8
Q ss_pred cCHHHHHHHHHHhhccCCeeeEECCCC--cCCHHHHHHHHHHhC-CCceEEeCcccccCHHHHHHHHhcCCCCEEEeccC
Q 043137 279 ISGDALKDLYKSFISDYPIVSIEDPFD--QDDWEHYAKLTSEVG-EKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVN 355 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEdP~~--~~D~~~~~~L~~~~~-~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~ 355 (445)
+|..+.-++ ++.-++++.||=-.|- ++|+..++++.+..+ .+++|++-=......+.+...++. +|.+.+-.+
T Consensus 170 ltekD~~di--~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~--~DgImVaRG 245 (470)
T PRK09206 170 LAEKDKQDL--IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA--SDGIMVARG 245 (470)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh--CCEEEECcc
Confidence 455554432 2333466666665653 467777777776654 246665442112234445555554 999998765
Q ss_pred Ccc---cH----HHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHhhh--cCCccccCC-----CCCchhH
Q 043137 356 QIG---SV----TESIEAVRMSKQAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKTGA-----PCRSERL 414 (445)
Q Consensus 356 ~~G---Gi----t~a~~ia~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~G~-----~~~~e~~ 414 (445)
-.| |+ .--+++++.|+++|.++++..++.||.. +=..|+|-|. ++.-+.+-+ ....|-+
T Consensus 246 DLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV 325 (470)
T PRK09206 246 DLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAV 325 (470)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHH
Confidence 443 22 2346788899999999999888777643 2345666664 454444422 2244555
Q ss_pred HHHHHHHHH
Q 043137 415 AKYNQLLRI 423 (445)
Q Consensus 415 ~k~n~ll~i 423 (445)
.-.++..+-
T Consensus 326 ~~m~~I~~~ 334 (470)
T PRK09206 326 SIMATICER 334 (470)
T ss_pred HHHHHHHHH
Confidence 556665543
No 281
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.33 E-value=7.6e+02 Score=24.09 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=55.5
Q ss_pred CccCHHHHHHHHHHhhccCCeeeE----E------CCCCcC-CHH----HHHHHHHHhCCCceEEeCcccccCHHHHHHH
Q 043137 277 QKISGDALKDLYKSFISDYPIVSI----E------DPFDQD-DWE----HYAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341 (445)
Q Consensus 277 ~~~t~~~ai~~~~~~l~~~~i~~i----E------dP~~~~-D~~----~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~ 341 (445)
...+.+++++...+++++ +-.+| | +|++++ +++ -.+.|++. . +||.-|-. +++-++..
T Consensus 20 ~~~~~d~a~~~a~~m~~~-GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~--~~ISIDT~---~~~va~~a 92 (279)
T PRK13753 20 RRLDPAGAVTAAIEMLRV-GSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-M--HRVSIDSF---QPETQRYA 92 (279)
T ss_pred CCCCHHHHHHHHHHHHHC-CCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-C--CcEEEECC---CHHHHHHH
Confidence 345777888876666654 22222 1 233322 222 12233322 3 78888853 37878888
Q ss_pred HhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 043137 342 IKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383 (445)
Q Consensus 342 i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~ 383 (445)
++.+ +|+|| |++ |.+ --++...+..+++++++-|+.
T Consensus 93 l~aG-adiIN-DVs---g~~-d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 93 LKRG-VGYLN-DIQ---GFP-DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred HHcC-CCEEE-eCC---CCC-chHHHHHHHHcCCCEEEEecC
Confidence 8876 57654 443 333 456677778889999998963
No 282
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.04 E-value=4.8e+02 Score=25.58 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 312 YAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 312 ~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
.+.+.++.+..+|| =.|.. .+.+.+++.++.+ ++.|++|-+..- -|..+++++.+|+++|+.+ -+||
T Consensus 67 ~~~~A~~~~~~vPV~lHLDHg--~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~ 140 (286)
T PRK08610 67 VEGLMHDLNITIPVAIHLDHG--SSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGT 140 (286)
T ss_pred HHHHHHHcCCCCCEEEECCCC--CCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 34444444311454 56763 4789999999886 599999988652 3567899999999999876 4555
No 283
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=21.01 E-value=7.5e+02 Score=27.57 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHhhccCCeeeE-ECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 278 KISGDALKDLYKSFISDYPIVSI-EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~i-EdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
..++.+..+.|.+. -...|..+ |+.+-..+++.++.+++.++ +||.--++. -++.++...-.. .+|+|.+=+.-
T Consensus 69 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~--~PvLrKDFI-id~~QI~ea~~~-GADavLLI~~~ 143 (695)
T PRK13802 69 IPDPAALAREYEQG-GASAISVLTEGRRFLGSLDDFDKVRAAVH--IPVLRKDFI-VTDYQIWEARAH-GADLVLLIVAA 143 (695)
T ss_pred CCCHHHHHHHHHHc-CCcEEEEecCcCcCCCCHHHHHHHHHhCC--CCEEecccc-CCHHHHHHHHHc-CCCEeehhHhh
Confidence 34666655443321 11225555 55566789999999999998 999877764 457777665433 46888887766
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecC
Q 043137 357 IGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 357 ~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
.+ -.+..++.++|++.|+.+.+--
T Consensus 144 L~-~~~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 144 LD-DAQLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred cC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 54 3578899999999999987644
No 284
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.93 E-value=3.7e+02 Score=26.33 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 312 YAKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 312 ~~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
...++++.+ +|| =.|.. .+.+.+.+.++.+ ++.|++|-+..- =|..+++++.+|+.+|+.+ -+||
T Consensus 66 ~~~~A~~~~--VPValHLDH~--~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~ 137 (284)
T PRK12857 66 VRTAAEKAS--VPVALHLDHG--TDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGK 137 (284)
T ss_pred HHHHHHHCC--CCEEEECCCC--CCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 344555565 665 56763 4689999999986 689999988642 2556899999999999876 4455
No 285
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=20.89 E-value=5.5e+02 Score=25.18 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHhhccC--CeeeEECCCCcCCHHHHHHHHHHhCCCceEE
Q 043137 280 SGDALKDLYKSFISDY--PIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326 (445)
Q Consensus 280 t~~~ai~~~~~~l~~~--~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~ 326 (445)
..++++++.. ...+. +..|+|-|+ .+.+.++++.+.++.++|++
T Consensus 164 g~deAI~Ra~-aY~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~p~pv~ 209 (290)
T TIGR02321 164 GQQEAVRRGQ-AYEEAGADAILIHSRQ--KTPDEILAFVKSWPGKVPLV 209 (290)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEecCCC--CCHHHHHHHHHhcCCCCCeE
Confidence 3478999854 44554 477887654 46788999999987556763
No 286
>PTZ00066 pyruvate kinase; Provisional
Probab=20.60 E-value=5.2e+02 Score=27.64 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=75.0
Q ss_pred cCHHHHHHHHHHhhccCCeeeEECCCC--cCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC
Q 043137 279 ISGDALKDLYKSFISDYPIVSIEDPFD--QDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~i~~iEdP~~--~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~ 356 (445)
+|..+.-+. .++.-+.++.||=-.|- ++|+...+++-...+.+++|++-=......+.+...+ .++|.+++-=+.
T Consensus 207 ltekD~~dI-~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl--~~sDGIMVARGD 283 (513)
T PTZ00066 207 IGEKDKNDI-LNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEIL--AESDGIMVARGD 283 (513)
T ss_pred CCHHHHHHH-HHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHH--HhcCEEEEEccc
Confidence 455554332 12333567777766663 4677777776665544588866532112233344444 368999986555
Q ss_pred ccc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHhhh--cCCcccc
Q 043137 357 IGS-------VTESIEAVRMSKQAGWGVMASHRSGETED-------TFIADLSVGL--ATGQIKT 405 (445)
Q Consensus 357 ~GG-------it~a~~ia~~A~~~g~~~~~~~~~~et~~-------~~~~~la~a~--~~~~~~~ 405 (445)
.|- ..--++|++.|+.+|.++++..++.||.. +=..|+|-|. ++.-+.+
T Consensus 284 LGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavML 348 (513)
T PTZ00066 284 LGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVML 348 (513)
T ss_pred cccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEe
Confidence 442 23357899999999999999888777643 2345666665 5555554
No 287
>PRK08960 hypothetical protein; Provisional
Probab=20.60 E-value=3.2e+02 Score=27.47 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=56.0
Q ss_pred HHHHHHHHHhh-ccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC-ccc
Q 043137 282 DALKDLYKSFI-SDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ-IGS 359 (445)
Q Consensus 282 ~~ai~~~~~~l-~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~-~GG 359 (445)
.+++..+...+ ++-+-..+++|..+.....+.....+. ..+|+-.+..+.-+++++.+.++.+..-++...++. .|.
T Consensus 102 ~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~-~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~ 180 (387)
T PRK08960 102 SGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAA-QLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGT 180 (387)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeE-EEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCc
Confidence 45555544433 445577899998766544433322221 013331111112257888887776655555555543 343
Q ss_pred ---HHHHHHHHHHHHHcCCcEEecC
Q 043137 360 ---VTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 360 ---it~a~~ia~~A~~~g~~~~~~~ 381 (445)
..+..+++++|+++|+.+++..
T Consensus 181 ~~~~~~~~~l~~~~~~~~~~li~De 205 (387)
T PRK08960 181 LLSRDELAALSQALRARGGHLVVDE 205 (387)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 3467788889999999876654
No 288
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=20.42 E-value=4.9e+02 Score=25.38 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 043137 313 AKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG---SVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 313 ~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~G---Git~a~~ia~~A~~~g~~~--~~~~ 381 (445)
..+.++.+ +|| =.|.. .+.+.+++.++.+ ++.||+|-+... =+..++++.++|+.+|+.+ -++|
T Consensus 67 ~~~a~~~~--vpv~lHlDH~--~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~gh 137 (281)
T PRK06806 67 VAAAKQAK--VPVAVHFDHG--MTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGR 137 (281)
T ss_pred HHHHHHCC--CCEEEECCCC--CCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 34444555 665 56763 5688888888875 699999987653 2445788889999999876 3455
No 289
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.36 E-value=6.5e+02 Score=25.39 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=57.7
Q ss_pred HHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEEec-c-CCcccH
Q 043137 284 LKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLK-V-NQIGSV 360 (445)
Q Consensus 284 ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ik-~-~~~GGi 360 (445)
++..+..++.+-+-..+.+|....-..-++.+..+.+ +.+ .-| . .+++++++.++. ....|.+. + +-.|-+
T Consensus 74 al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G--~~v~~vd-~--~d~~~le~~i~~-~tklv~le~psnptg~v 147 (378)
T TIGR01329 74 ALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSG--VVVVHVD-T--TDLDKVKAALGP-KTKLVLLESPTNPLQKI 147 (378)
T ss_pred HHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcC--cEEEEeC-C--CCHHHHHHhcCc-CceEEEEECCCCCCCee
Confidence 3333334555555555666655433334555556666 544 333 2 357888888764 34555544 3 346778
Q ss_pred HHHHHHHHHHHHcCCcEEecCC
Q 043137 361 TESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 361 t~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.+..+++++|+++|+.+++...
T Consensus 148 ~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 148 VDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred ecHHHHHHHHHHcCCEEEEECC
Confidence 8999999999999999887664
No 290
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.28 E-value=8.6e+02 Score=24.16 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhccCCeeeEEC----CCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCC-
Q 043137 282 DALKDLYKSFISDYPIVSIED----PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ- 356 (445)
Q Consensus 282 ~~ai~~~~~~l~~~~i~~iEd----P~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~- 356 (445)
++.++.+.+++++.++.-+=- -++++.+..+.++.++.+ +.++-|-+ -.-+.+.++.+ ...||+++
T Consensus 117 ~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g--~~vilD~S----g~~L~~~L~~~---P~lIKPN~~ 187 (310)
T COG1105 117 EQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQG--AKVILDTS----GEALLAALEAK---PWLIKPNRE 187 (310)
T ss_pred HHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcC--CeEEEECC----hHHHHHHHccC---CcEEecCHH
Confidence 455666666677778766665 355677777777777777 88888843 57777888766 77777763
Q ss_pred ---------cccHHHHHHHHHHHHHcCCcEEecCC
Q 043137 357 ---------IGSVTESIEAVRMSKQAGWGVMASHR 382 (445)
Q Consensus 357 ---------~GGit~a~~ia~~A~~~g~~~~~~~~ 382 (445)
.....+.++.++.....|++.++=++
T Consensus 188 EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSl 222 (310)
T COG1105 188 ELEALFGRELTTLEDVIKAARELLAEGIENVIVSL 222 (310)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 45566777777777778888766553
No 291
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=20.27 E-value=8e+02 Score=23.81 Aligned_cols=99 Identities=9% Similarity=0.062 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHHhhccCC-----eeeEECC-CCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEe
Q 043137 279 ISGDALKDLYKSFISDYP-----IVSIEDP-FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352 (445)
Q Consensus 279 ~t~~~ai~~~~~~l~~~~-----i~~iEdP-~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~i 352 (445)
++.++=+++ .+.|.+.+ +..||=| +...|.+...++.+.-.....|.+- ...+.+++++.++.+ ++.+.+
T Consensus 18 ~~~~~Kv~i-~~~L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~~~~~~~v~~~--~r~~~~die~A~~~g-~~~v~i 93 (279)
T cd07947 18 YTVEQIVKI-YDYLHELGGGSGVIRQTEFFLYTEKDREAVEACLDRGYKFPEVTGW--IRANKEDLKLVKEMG-LKETGI 93 (279)
T ss_pred CCHHHHHHH-HHHHHHcCCCCCccceEEecCcChHHHHHHHHHHHcCCCCCEEEEE--ecCCHHHHHHHHHcC-cCEEEE
Confidence 367777776 55678899 9999965 2334555555555431101335443 356789999988764 455554
Q ss_pred ccC-------------CcccHHHHHHHHHHHHHcCCcEEecC
Q 043137 353 KVN-------------QIGSVTESIEAVRMSKQAGWGVMASH 381 (445)
Q Consensus 353 k~~-------------~~GGit~a~~ia~~A~~~g~~~~~~~ 381 (445)
-++ +---+..+.+++.+|+.+|+.+.++-
T Consensus 94 ~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 94 LMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 322 22345556778889999999875544
No 292
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=20.25 E-value=4.7e+02 Score=25.63 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--CCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 043137 309 WEHYAKLTSEV--GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVRMSKQAGWGV 377 (445)
Q Consensus 309 ~~~~~~L~~~~--~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~---GGit~a~~ia~~A~~~g~~~ 377 (445)
......++++. + +||+--=-...+.+.+++.++.+ ++.|++|-+.. ==|-.+++++.+|+.+|+.+
T Consensus 64 ~~~~~~~a~~~~~~--VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 64 SAMVKAMSEAYPYG--VPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred HHHHHHHHHhccCC--CcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 293
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.17 E-value=4.5e+02 Score=25.69 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=56.1
Q ss_pred ccCHHHHHHHHHHhhccCCeeeEECCCCcCCHHHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCc
Q 043137 278 KISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357 (445)
Q Consensus 278 ~~t~~~ai~~~~~~l~~~~i~~iEdP~~~~D~~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~ 357 (445)
+.-.++-++++.+.-+++++--+=|=..+++.+. +.+... +-=+|--.+ .+. ++.+.+. +.--.|++|=.+.
T Consensus 69 G~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~---~ae~vD--ilQIgAr~~-rnt-dLL~a~~-~t~kpV~lKrGqf 140 (281)
T PRK12457 69 GVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAP---VAEVAD--VLQVPAFLA-RQT-DLVVAIA-KTGKPVNIKKPQF 140 (281)
T ss_pred CCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHH---HhhhCe--EEeeCchhh-chH-HHHHHHh-ccCCeEEecCCCc
Confidence 4444677777777667788765555554444333 333333 222455443 333 3433332 2346889998888
Q ss_pred ccHHHHHHHHHHHHHcC-CcEEecC
Q 043137 358 GSVTESIEAVRMSKQAG-WGVMASH 381 (445)
Q Consensus 358 GGit~a~~ia~~A~~~g-~~~~~~~ 381 (445)
-...+++-++.+..+.| -++++-+
T Consensus 141 ~s~~e~~~aae~i~~~Gn~~vilcE 165 (281)
T PRK12457 141 MSPTQMKHVVSKCREAGNDRVILCE 165 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 88888888888877775 3444433
No 294
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=20.14 E-value=4.5e+02 Score=26.25 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=47.0
Q ss_pred HHHHHHhCCCceE--EeCcccccCHHHHHHHHhcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 043137 313 AKLTSEVGEKVQI--VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI---GSVTESIEAVRMSKQAGWGV--MASH 381 (445)
Q Consensus 313 ~~L~~~~~~~vpI--~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~---GGit~a~~ia~~A~~~g~~~--~~~~ 381 (445)
..+.++.+..+|| -.|.. .+.+.+.+.++.+ ++.|++|-+.. --|..+++++.+|+++|+.+ -+||
T Consensus 76 ~~~a~~a~~~VPV~lHLDHg--~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~ 148 (321)
T PRK07084 76 VEYAKELGCPIPIVLHLDHG--DSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGV 148 (321)
T ss_pred HHHHHHcCCCCcEEEECCCC--CCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 4445554112665 66763 5689999999886 58999998864 23667899999999999876 4444
No 295
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.04 E-value=6.4e+02 Score=24.64 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCceEEeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh
Q 043137 310 EHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389 (445)
Q Consensus 310 ~~~~~L~~~~~~~vpI~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~~~~~~~~~et~~~ 389 (445)
+..++++++.+...+|.-+ +.+.+++...++.++ |++++|=+. +.+.++++.+.+... .+.++ |.....
T Consensus 181 ~av~~~r~~~~~~~kIeVE---v~slee~~ea~~~ga-DiImLDn~s---~e~l~~av~~~~~~~-~leaS---GgI~~~ 249 (281)
T PRK06543 181 EALRHVRAQLGHTTHVEVE---VDRLDQIEPVLAAGV-DTIMLDNFS---LDDLREGVELVDGRA-IVEAS---GNVNLN 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEEE---eCCHHHHHHHHhcCC-CEEEECCCC---HHHHHHHHHHhCCCe-EEEEE---CCCCHH
Confidence 4566666665422334222 456788888776554 888888764 455555555554322 22222 333344
Q ss_pred HHHHHHhhhcCCccccCCCCCc
Q 043137 390 FIADLSVGLATGQIKTGAPCRS 411 (445)
Q Consensus 390 ~~~~la~a~~~~~~~~G~~~~~ 411 (445)
.+...|. ++..++..|.+.-+
T Consensus 250 ni~~yA~-tGVD~Is~galths 270 (281)
T PRK06543 250 TVGAIAS-TGVDVISVGALTHS 270 (281)
T ss_pred HHHHHHh-cCCCEEEeCccccC
Confidence 4455543 47777777776543
No 296
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.01 E-value=4.7e+02 Score=24.25 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhCCCceE-EeCcccccCHHHHHHHHhcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCc
Q 043137 307 DDWEHYAKLTSEVGEKVQI-VGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWG 376 (445)
Q Consensus 307 ~D~~~~~~L~~~~~~~vpI-~gde~~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~ia~~A~~~g~~ 376 (445)
.+++-++++++.++ +|+ +|+. +.+.++++++++.+ ++.+.+... .+.+.-.+.++.+.++-+
T Consensus 61 ~n~~~~~~i~~~~~--~pv~~~gg--i~~~~d~~~~~~~G-~~~vilg~~---~l~~~~~~~~~~~~~~~~ 123 (232)
T TIGR03572 61 PLFELISNLAEECF--MPLTVGGG--IRSLEDAKKLLSLG-ADKVSINTA---ALENPDLIEEAARRFGSQ 123 (232)
T ss_pred CCHHHHHHHHHhCC--CCEEEECC--CCCHHHHHHHHHcC-CCEEEEChh---HhcCHHHHHHHHHHcCCc
Confidence 46778888888887 665 4444 35688998887764 677665532 233333444455655533
Done!