RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 043137
(445 letters)
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 879 bits (2273), Expect = 0.0
Identities = 365/443 (82%), Positives = 385/443 (86%), Gaps = 9/443 (2%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
+ TIT VKARQI DSRGNPTVEVD+ TS G RAAVPSGASTGIYEALELRDG DYL
Sbjct: 24 VMATITKVKARQIIDSRGNPTVEVDLHTSKGM-FRAAVPSGASTGIYEALELRDGDKDYL 82
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGV KAV NVN II PAL G DPT+QT IDN+M++ LDGT N K KLGANAILAV
Sbjct: 83 GKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLE-LDGTPN-----KGKLGANAILAV 136
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA K +PLYKHIA+L+GNK LVLPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 137 SLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 196
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
AS FKEAM+MG EVYHHLKAVIKKKYGQDA NVGDEGGFAPNIQ+NKEGLELL AI KA
Sbjct: 197 ASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKA 256
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYTGK+ IGMDVAASEFY DK YDL+FKEENNDGS K SGD L DLYK F+SDYPIVSI
Sbjct: 257 GYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSI 316
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDWEH+AKLTS E VQIVGDDLLVTNPKRV KAI+EK CNALLLKVNQIG+V
Sbjct: 317 EDPFDQDDWEHWAKLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTV 374
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TESIEAV+MSK AGWGVM SHRSGETED+FIADL+VGLATGQIKTGAPCRSERLAKYNQL
Sbjct: 375 TESIEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQL 434
Query: 421 LRIEEELGAEAVYAGAKFRAPVE 443
LRIEEELG EAVYAG FR PV
Sbjct: 435 LRIEEELGDEAVYAGENFRKPVW 457
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 781 bits (2020), Expect = 0.0
Identities = 319/438 (72%), Positives = 362/438 (82%), Gaps = 5/438 (1%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGK 62
TI ++KAR+I DSRGNPTVEVD+TT G V RAAVPSGASTGIYEALELRDG S YLGK
Sbjct: 3 TIKSIKAREILDSRGNPTVEVDLTTEKG-VFRAAVPSGASTGIYEALELRDGDKSRYLGK 61
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN II PAL GKD T+Q +D MV+QLDGT NEWGWCK KLGANAILAVS+
Sbjct: 62 GVLKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSM 121
Query: 123 AVCKAGAHVKKIPLYKHIAELSGN--KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
AV +A A K +PLYK++A+L+G VLPVP FNVINGG HAGNKLA QEFMI PVG
Sbjct: 122 AVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVG 181
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
A FKEA++MG EVYH LK+VIKKKYG DATNVGDEGGFAPNI++ +E L+LL AI KA
Sbjct: 182 APSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKA 241
Query: 241 GYTGKVVIGMDVAASEFYGSD-KTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
GY GKV I MDVAASEFY + K YDL+FK NND S K++G+ L +LY + YPIVS
Sbjct: 242 GYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVS 301
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPFDQDDWE YAKLT+ +G+KVQIVGDDLLVTNP R++KAI++K CNALLLKVNQIG+
Sbjct: 302 IEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGT 361
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
VTE+IEA +++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQ
Sbjct: 362 VTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQ 421
Query: 420 LLRIEEELGAEAVYAGAK 437
LLRIEEELG+ AVYAG
Sbjct: 422 LLRIEEELGSNAVYAGEN 439
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 742 bits (1919), Expect = 0.0
Identities = 269/423 (63%), Positives = 324/423 (76%), Gaps = 18/423 (4%)
Query: 7 AVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVS 65
+KAR+I DSRGNPTVEV+VTT DG V RAAVPSGASTG +EA+ELRDG YLGKGV
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 66 KAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVC 125
KAV NVN II PAL G D T+Q AID +++ LDGT N K KLGANAIL VSLAV
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIE-LDGTPN-----KSKLGANAILGVSLAVA 114
Query: 126 KAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFK 185
KA A +PLY+++ G VLPVP FNVINGG+HAGNKL QEFMI+PVGA F
Sbjct: 115 KAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFS 171
Query: 186 EAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG- 244
EA++MG EVYH LK V+KKK G ATNVGDEGGFAPN+ N+E L+LL AI KAGY
Sbjct: 172 EALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPG 231
Query: 245 -KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDP 303
K+ I +DVAASEFY + Y + +D +K++ + L D YK + YPIVSIEDP
Sbjct: 232 KKIAIALDVAASEFY-DEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDP 285
Query: 304 FDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTES 363
FD+DDWE +AKLT+++G+K+QIVGDDL VTNP+R++K I++K NALL+KVNQIG++TE+
Sbjct: 286 FDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTET 345
Query: 364 IEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423
IEA++++K+ G+GV+ SHRSGETEDTFIADL+V L GQIKTGAPCRSER AKYNQLLRI
Sbjct: 346 IEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRI 405
Query: 424 EEE 426
EEE
Sbjct: 406 EEE 408
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 670 bits (1731), Expect = 0.0
Identities = 243/438 (55%), Positives = 308/438 (70%), Gaps = 23/438 (5%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
I + AR+I DSRGNPTVEV+VT DG RAAVPSGASTG EA+ELRDG YLGK
Sbjct: 3 KIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGK 62
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN I PAL G D +Q AID M++ LDGT N K KLGANAIL VSL
Sbjct: 63 GVLKAVENVNEEIAPALIGLDALDQRAIDKAMIE-LDGTPN-----KSKLGANAILGVSL 116
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
AV KA A +PLY+++ G VLPVP N+INGG+HA N + +QEFMI+PVGA
Sbjct: 117 AVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAP 173
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
FKEA++MG EV+H LK V+K+K G +T VGDEGGFAPN++ N+E L+L+ AI KAGY
Sbjct: 174 SFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGY 231
Query: 243 T-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
G+ + + +D AASEFY D Y L + ++ + + D + YPIVSI
Sbjct: 232 KPGEDIALALDCAASEFY-KDGKYVL--------EGEGLTSEEMIDYLAELVDKYPIVSI 282
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
ED D++DWE + LT ++G+KVQ+VGDDL VTN KR++K I++ N++L+KVNQIG++
Sbjct: 283 EDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTL 342
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TE+++A+ ++K+AG+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYNQL
Sbjct: 343 TETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQL 402
Query: 421 LRIEEELGAEAVYAGAKF 438
LRIEEELG A YAG K
Sbjct: 403 LRIEEELGDAARYAGKKA 420
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 616 bits (1590), Expect = 0.0
Identities = 251/436 (57%), Positives = 314/436 (72%), Gaps = 22/436 (5%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGV 64
I V AR+I DSRGNPTVEV+VT DG RAAVPSGASTG +EA+ELRDG S YLGKGV
Sbjct: 4 IEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGV 63
Query: 65 SKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAV 124
KAV+NVN II PAL G D T+Q ID+ +++ LDGT N K KLGANAIL VSLAV
Sbjct: 64 LKAVANVNEIIAPALIGLDATDQALIDSLLIE-LDGTEN-----KSKLGANAILGVSLAV 117
Query: 125 CKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCF 184
KA A IPLY+++ G LVLPVP NVINGG+HA N L +QEFMI+PVGA F
Sbjct: 118 AKAAAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESF 174
Query: 185 KEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG 244
KEA++ G EV+HHLK ++K+K +T VGDEGGFAPN++ N+E L++L AI +AGY
Sbjct: 175 KEALRAGAEVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEP 232
Query: 245 K--VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302
+ + +DVAASEFY D Y L + ++ + L + Y + YPIVSIED
Sbjct: 233 GEDIALALDVAASEFY-KDGKYVLEGE--------SLTSEELIEYYLELVKKYPIVSIED 283
Query: 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362
P +DDWE +A+LT +G+KVQIVGDDL VTNPKR++K I++ NA+L+K NQIG++TE
Sbjct: 284 PLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTE 343
Query: 363 SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 422
++EA+ ++K AG+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYN+LLR
Sbjct: 344 TLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLR 403
Query: 423 IEEELGAEAVYAGAKF 438
IEEELG +A YAG K
Sbjct: 404 IEEELGDKARYAGIKE 419
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 577 bits (1490), Expect = 0.0
Identities = 236/440 (53%), Positives = 301/440 (68%), Gaps = 19/440 (4%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKG 63
I ++AR+I DSRGNPTVEV+V DG RAAVPSGASTG EALELRDG YLGKG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
V KAV NVN II P L G D T+Q ID +++ LDGT N K KLGANAIL VS+A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIE-LDGTPN-----KSKLGANAILGVSMA 114
Query: 124 VCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASC 183
V KA A +PLY++ L G VLPVP N+INGG+HA N L QEFMI+PVGA
Sbjct: 115 VAKAAADSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPS 171
Query: 184 FKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT 243
F+EA++MG EV+H LK ++K+K AT VGDEGGFAPN+ N+E LE++ AI KAGY
Sbjct: 172 FREALRMGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGYK 229
Query: 244 -GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIE 301
G+ V + +D AASEFY + + E S++ + + Y+ + YPI+SIE
Sbjct: 230 PGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEE-----MIEYYEELVEKYPIISIE 284
Query: 302 DPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVT 361
D ++DWE +A+LT +G+KVQIVGDDL VTN + + + I+ N++L+K NQIG++T
Sbjct: 285 DGLSEEDWEGWAELTKRLGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT 344
Query: 362 ESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLL 421
E+++A+ ++K+AG+ + SHRSGETEDT IADL+V GQIKTG+ RSER+AKYNQLL
Sbjct: 345 ETLDAIELAKKAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLL 404
Query: 422 RIEEELGAEAVYAGAKFRAP 441
RIEEELG A YAG
Sbjct: 405 RIEEELGDSARYAGKNSFYR 424
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 555 bits (1431), Expect = 0.0
Identities = 220/295 (74%), Positives = 246/295 (83%), Gaps = 1/295 (0%)
Query: 149 LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQ 208
VLPVP NVINGGSHAGNKLAMQEFMILP GAS F EAM+MG EVYH+LK+VIK KYGQ
Sbjct: 2 YVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYGQ 61
Query: 209 DATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGS-DKTYDLN 267
DATNVGDEGGFAPNIQ NKE L+L+ AI KAGYTGKV I MDVA+SEFY D YDL+
Sbjct: 62 DATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDLD 121
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG 327
FK +D S+ ++ D L DLYK I YPIVSIEDPFD+DDWE + KLT+ +G+K+QIVG
Sbjct: 122 FKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIVG 181
Query: 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387
DDL VTNPKR+ KAI++K CN+LLLKVNQIGSVTES+ AV+M+K AGWGVM SHRSGETE
Sbjct: 182 DDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHRSGETE 241
Query: 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPV 442
DTFIADL VGL GQIKTGAPCRSERLAKYNQLLRIEEELG++A YAG FR P
Sbjct: 242 DTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRNFRKPQ 296
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 225 bits (577), Expect = 3e-73
Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 7/138 (5%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
TIT + AR+I DSRGNPTVEV+VT DG RAAVPSGASTG +EA+ELRDG Y GK
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN II PAL G D +Q AID ++ +LDGT N K KLGANAILAVSL
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLI-ELDGTPN-----KSKLGANAILAVSL 114
Query: 123 AVCKAGAHVKKIPLYKHI 140
AV KA A +PLY+++
Sbjct: 115 AVAKAAAAALGLPLYRYL 132
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 79.8 bits (197), Expect = 2e-16
Identities = 55/137 (40%), Positives = 71/137 (51%), Gaps = 23/137 (16%)
Query: 18 GNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77
G +VEVDV T G R A P + +Y A E +AVS V+ IIGP
Sbjct: 17 GKYSVEVDVITDSG-FGRFAAPIDENPSLYIA-EAH------------RAVSEVDEIIGP 62
Query: 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLY 137
L G D +EQ ID+Y+ ++DGT + +GAN LAVS+AV KA A+ K +PLY
Sbjct: 63 ELIGFDASEQELIDSYL-WEIDGTED-----FSHIGANTALAVSVAVAKAAANSKNMPLY 116
Query: 138 KHIAELSGNKNLVLPVP 154
+I G LPVP
Sbjct: 117 SYIG---GTFTTELPVP 130
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 77.0 bits (190), Expect = 4e-16
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 274 DGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVT 333
D + + L ++ + Y + IE+P DD E YA L G + I D+ + T
Sbjct: 100 DANGAWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTG--IPIAADESVTT 156
Query: 334 NPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSG-ETEDTFIA 392
+E A++ + L +K ++G +TES A +++ G VM
Sbjct: 157 VDDALE-ALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAAL 215
Query: 393 DLSVGL 398
L+ L
Sbjct: 216 HLAAAL 221
>gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building blocks for
antibiotics, herbicides, and drugs. NAAAR is a member of
the enolase superfamily, characterized by the presence
of an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 354
Score = 41.5 bits (98), Expect = 7e-04
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+Y ++ IE P DD +A+L + K I D+ + + + KAI+ C + +K
Sbjct: 202 EYGLLMIEQPLAADDLIDHAELQKLL--KTPICLDES-IQSAEDARKAIELGACKIINIK 258
Query: 354 VNQIGSVTESIEAVRMSKQAGWGV 377
++G +TE+++ + ++ G V
Sbjct: 259 PGRVGGLTEALKIHDLCQEHGIPV 282
>gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the
Mg2+-dependent 1,1-proton transfer reaction that
interconverts the enantiomers of mandelic acid. MR is
the first enzyme in the bacterial pathway that converts
mandelic acid to benzoic acid and allows this pathway to
utilize either enantiomer of mandelate. MR belongs to
the enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 355
Score = 40.2 bits (94), Expect = 0.002
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IE+P Q D+E +A++ S + VQ+ G++ L P+ + KA+ C+ ++ + +IG
Sbjct: 217 IEEPTLQHDYEGHARIASALRTPVQM-GENWL--GPEEMFKALSAGACDLVMPDLMKIGG 273
Query: 360 VTESIEAVRMSKQAGWGVMASH 381
VT + A +++QAG M+SH
Sbjct: 274 VTGWLRASALAEQAGIP-MSSH 294
>gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup
of the enolase superfamily. Enzymes of this subgroup
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and residues that can
function as general acid/base catalysts, a Lys-X-Lys
motif and another conserved lysine. Despite these
conserved residues, the members of the MLE subgroup,
like muconate lactonizing enzyme, o-succinylbenzoate
synthase (OSBS) and N-acylamino acid racemase (NAAAR),
catalyze different reactions.
Length = 265
Score = 38.1 bits (89), Expect = 0.006
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
D + +E P DD E A L I+ D+ T P + + +A+ +K
Sbjct: 154 DLGLDYVEQPLPADDLEGRAALARATD--TPIMADESAFT-PHDAFRELALGAADAVNIK 210
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMAS 380
+ G +T++ + +++ G VM
Sbjct: 211 TAKTGGLTKAQRVLAVAEALGLPVMVG 237
>gnl|CDD|239430 cd03314, MAL, Methylaspartate ammonia lyase (3-methylaspartase,
MAL) is a homodimeric enzyme, catalyzing the
magnesium-dependent reversible alpha,beta-elimination of
ammonia from L-threo-(2S,3S)-3-methylaspartic acid to
mesaconic acid. This reaction is part of the main
catabolic pathway for glutamate. MAL belongs to the
enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 369
Score = 37.4 bits (87), Expect = 0.011
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 294 DYPIVSIEDPFD----QDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKT 346
+P + IE P D + E A L +E+ G V+IV D+ T + +
Sbjct: 227 PFP-LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNT-LEDIRDFADAGA 284
Query: 347 CNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401
+ + +K +G + +I+AV K+ G G ET+ + + V LAT
Sbjct: 285 AHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALATR 339
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 37.4 bits (87), Expect = 0.014
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+Y + IE+P DD E +L + I + V + ++ + +
Sbjct: 213 EYGLEWIEEPLPPDDLEGLRELRAAT--STPIAAGES-VYTRWDFRRLLEAGAVDIVQPD 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSG 384
+ ++G +TE+++ +++ G V H G
Sbjct: 270 LARVGGITEALKIAALAEGFGVMV-GPHVEG 299
>gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase. This
model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are low GC gram positive bacteria and archaea.
Also included in the seed and in the model are enzymes
with the com-name of N-acylamino acid racemase (or the
more general term, racemase / racemase family), which
refers to the enzyme's industrial application as
racemases, and not to its biological function as
o-succinylbenzoic acid synthetase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 324
Score = 36.0 bits (83), Expect = 0.033
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 284 LKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIK 343
LK+L Y ++ IE+PF DD +L + + D +T+ I+
Sbjct: 192 LKEL-----DRYQLLYIEEPFKIDDISMLDELAKGTITPICL---DESITSLDDARNLIE 243
Query: 344 EKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGV 377
+ +K ++G +TE +A+ K+ G V
Sbjct: 244 LGNVKVINIKPGRLGGLTEVQKAIDTCKEHGAKV 277
>gnl|CDD|226321 COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport
and metabolism].
Length = 410
Score = 34.8 bits (80), Expect = 0.078
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 294 DYPIVSIEDPFD----QDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKT 346
P+ IE P D A +T E+ G V+IV D+ T + +
Sbjct: 264 GLPL-YIEGPVDAGSKPAQIRLLAAITKELTRLGSGVKIVADEWCNTY-QDIVDFTDAAA 321
Query: 347 CNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLAT 400
C+ + +K +GS+ + AV ET+ + + V LAT
Sbjct: 322 CHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSARTCVHVALAT 375
>gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes
the epimerization of L-Ala-D/L-Glu and other dipeptides.
The genomic context and the substrate specificity of
characterized members of this family from E.coli and
B.subtilis indicates a possible role in the metabolism
of the murein peptide of peptidoglycan, of which
L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a
member of the enolase-superfamily, which is
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 316
Score = 33.7 bits (78), Expect = 0.16
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + IE P D + A L + + I+ D+ + + + + +K
Sbjct: 202 ELGVELIEQPVPAGDDDGLAYLRDKSP--LPIMADES-CFSAADAARLAGGGAYDGINIK 258
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G +TE++ +++ AG VM
Sbjct: 259 LMKTGGLTEALRIADLARAAGLKVM 283
>gnl|CDD|213632 TIGR01502, B_methylAsp_ase, methylaspartate ammonia-lyase. This
model describes methylaspartate ammonia-lyase, also
called beta-methylaspartase (EC 4.3.1.2). It follows
methylaspartate mutase (composed of S and E subunits) in
one of several possible pathways of glutamate
fermentation [Energy metabolism, Amino acids and amines,
Energy metabolism, Fermentation].
Length = 408
Score = 32.9 bits (75), Expect = 0.31
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 294 DYPIVSIEDPFD----QDDWEHYAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKT 346
+ + IE P D Q E A L +E+ G +IV D+ T + V+ K
Sbjct: 263 PFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTV-EDVKFFTDAKA 320
Query: 347 CNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATG 401
+ + +K +G V A+ K G G ET + VG+ATG
Sbjct: 321 GHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATG 375
>gnl|CDD|218792 pfam05880, Fiji_64_capsid, Fijivirus 64 kDa capsid protein. This
family consists of several Fijivirus 64 kDa capsid
proteins.
Length = 559
Score = 32.5 bits (74), Expect = 0.54
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 185 KEAMKMGVEVYHHLKAVIKKKYGQDATNV 213
+ +K+GVE HL V+ KKY ++
Sbjct: 433 FDYIKLGVEKASHLAGVLMKKYNITLDDI 461
>gnl|CDD|240335 PTZ00259, PTZ00259, endonuclease G; Provisional.
Length = 434
Score = 31.4 bits (71), Expect = 1.0
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 93 YMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLP 152
++ + + + +W + + A KK+ Y E+ G+ N+ +P
Sbjct: 244 FVPRYMREKLRKWRLAEPS-------EIHKPDSPADKTPKKVVTY----EVIGDNNVAVP 292
Query: 153 VPAFNVINGGSHAGNKLAMQEFMI 176
F VI + G + F++
Sbjct: 293 THLFKVILAEKNDGPPHEVAAFLM 316
>gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain. C-terminal domain is TIM
barrel fold, dehydratase-like domain. Manganese is
associated with this domain.
Length = 69
Score = 28.2 bits (64), Expect = 1.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVG 320
Y ++ IE+P DD E A+L
Sbjct: 37 PYGLLWIEEPLPPDDLEGLAELRRATP 63
>gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. This domain
appears at the C-terminus of many of the proteins that
carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746
domains. EC:4.2.1.40.
Length = 111
Score = 28.7 bits (65), Expect = 2.1
Identities = 6/47 (12%), Positives = 22/47 (46%)
Query: 332 VTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVM 378
+ + + ++ + + V ++G +TE+++ +++ G V
Sbjct: 4 LYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVA 50
>gnl|CDD|148650 pfam07163, Pex26, Pex26 protein. This family consists of Pex26 and
related mammalian proteins. Pex26 is a type II
peroxisomal membrane protein which recruits Pex6-Pex1
complexes to peroxisomes. Mutations in Pex26 can lead to
human disorders.
Length = 309
Score = 29.6 bits (66), Expect = 2.9
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 353 KVNQIGSVTESIEAVRMSKQAGWGVMASH-RSGETEDTFIADLSVGLATGQIKTGAPCRS 411
KV++ GS++ + ++ M + W SH RS +A L + L + P
Sbjct: 222 KVSKEGSLSLKLLSLIMLLRRLWSSAVSHIRSIPFRKVLLAALILCLLIARFDPALPSSL 281
Query: 412 ERLAKYNQLLR 422
L + +QL +
Sbjct: 282 PFLYRLHQLFQ 292
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 30.0 bits (67), Expect = 3.1
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 5 ITAVKARQIFDSRGNPTV--------------EVDVTTSDGHVARAAVPSGASTGIYEAL 50
+T +K ++F+ +GN + E++V T DG A+ +P G +G +
Sbjct: 256 VTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESG--QVF 313
Query: 51 ELRDGGSDYLG 61
L+ G YLG
Sbjct: 314 RLKGHGMPYLG 324
>gnl|CDD|239244 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD)
FMN-binding domain. DHPD catalyzes the first step in
pyrimidine degradation: the NADPH-dependent reduction of
uracil and thymine to the corresponding
5,6-dihydropyrimidines. DHPD contains two FAD, two FMN,
and eight [4Fe-4S] clusters, arranged in two electron
transfer chains that pass the dimer interface twice. Two
of the Fe-S clusters show a hitherto unobserved
coordination involving a glutamine residue.
Length = 299
Score = 29.2 bits (66), Expect = 4.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 279 ISGDALKDLYKSFI---SDYP----IVSIEDPFDQDDWEHYAKLTSEVG 320
IS L+ K D+P I SI ++++DW AKL E G
Sbjct: 78 ISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAG 126
>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
Length = 390
Score = 29.2 bits (66), Expect = 4.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 113 GANAILAVSLAVCKAGAHV 131
G AILAV +A+ +AG HV
Sbjct: 85 GMAAILAVVMALLQAGDHV 103
>gnl|CDD|224419 COG1502, Cls,
Phosphatidylserine/phosphatidylglycerophosphate/cardioli
pin synthases and related enzymes [Lipid metabolism].
Length = 438
Score = 29.1 bits (65), Expect = 6.0
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 263 TYDLNFKEENN--DGSQKISGDALKDLYKSFISDYPI-VSIEDPFDQDDWEH---YAKLT 316
Y K D +I+G A+ DL + FI D+ + P + L
Sbjct: 187 EYFHKDKGLGYWRDLHVRITGPAVADLARLFIQDWNLESGSSKPLLALVRPPLQSLSLLP 246
Query: 317 SEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESI 364
G VQ++ +K + + L + I S ESI
Sbjct: 247 VGRGSTVQVLSS--------GPDKGLGSELIELNRLLLKAINSARESI 286
>gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric
enzyme, catalyses the conversion of cis,cis-muconate
(CCM) to muconolactone (ML) in the catechol branch of
the beta-ketoadipate pathway. This pathway is used in
soil microbes to breakdown lignin-derived aromatics,
catechol and protocatechuate, to citric acid cycle
intermediates. Some bacterial species are also capable
of dehalogenating chloroaromatic compounds by the action
of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs
are members of the enolase superfamily characterized by
the presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and that
is stabilized by coordination to the essential Mg2+ ion.
Length = 365
Score = 28.4 bits (64), Expect = 7.0
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 22 VEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAG 81
V V +TTSDG V GI EA GG + G+ + ++ + P L G
Sbjct: 31 VLVRLTTSDGVV-----------GIGEATTP--GGPAWGGESPETIKAIIDRYLAPLLIG 77
Query: 82 KDPTEQTAIDNYMVQQLDGTV 102
+D T A LD V
Sbjct: 78 RDATNIGAAM----ALLDRAV 94
>gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain. Mandelate racemase (MR) and
muconate lactonizing enzyme (MLE) are two bacterial
enzymes involved in aromatic acid catabolism. They
catalyze mechanistically distinct reactions yet they are
related at the level of their primary, quaternary
(homooctamer) and tertiary structures.. This entry
represents the C-terminal region of these proteins.
Length = 97
Score = 26.9 bits (60), Expect = 7.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEV 319
+ + IE+P DD E A+L
Sbjct: 70 ELGLEWIEEPVPPDDLEGLAELRRAT 95
>gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 2. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown.
Length = 341
Score = 28.5 bits (64), Expect = 8.4
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 77 PALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPL 136
L GKDP++ + Q+ +G ++ + AI AV LA+ ++ P+
Sbjct: 44 RFLIGKDPSDI----EKLWDQMYRATLAYG--RKGIAMAAISAVDLALWDLLGKIRGEPV 97
Query: 137 YK 138
YK
Sbjct: 98 YK 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,486,973
Number of extensions: 2208777
Number of successful extensions: 1592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 41
Length of query: 445
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 345
Effective length of database: 6,502,202
Effective search space: 2243259690
Effective search space used: 2243259690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.2 bits)