RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043137
(445 letters)
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 841 bits (2174), Expect = 0.0
Identities = 279/449 (62%), Positives = 339/449 (75%), Gaps = 6/449 (1%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-Y 59
M I + AR+I DSRGNPT+EVDV+T G V RAAVPSGASTGIYEALELRD Y
Sbjct: 1 MV-VIKDIVAREILDSRGNPTIEVDVSTEGG-VFRAAVPSGASTGIYEALELRDKDPKRY 58
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
LGKGV AV V I PAL GKDP +Q ID MV+QLDGT NEWG+ K KLGANAIL
Sbjct: 59 LGKGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILG 118
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNK--NLVLPVPAFNVINGGSHAGNKLAMQEFMIL 177
VS+A C+AGA K +PLYK+IA L+G +V+PVP FNVINGG HAGN LA+QEF+I
Sbjct: 119 VSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIA 178
Query: 178 PVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAI 237
PVGA +EA++ G E YHHLK VIK KYG DATNVGDEGGFAPN+ +E L LL AI
Sbjct: 179 PVGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAI 238
Query: 238 AKAGYTGKVVIGMDVAASEFY-GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYP 296
AGY GK+ I D AASEFY +K YDL++K + + S+ ++G+ LK++Y+ ++ YP
Sbjct: 239 KAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP 298
Query: 297 IVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQ 356
I+S+EDPFDQDD+ ++ T +VGEK Q++GDD+LVTN R+EKA+K+K CN LLLKVNQ
Sbjct: 299 IISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQ 358
Query: 357 IGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAK 416
IGSVTE+IEA +++++GWGV SHRSGETED+FIADL VGL GQIK+G+PCRSERL K
Sbjct: 359 IGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCK 418
Query: 417 YNQLLRIEEELGAEAVYAGAKFRAPVEPY 445
YNQL+RIEE LGA+ VYAG FR P +
Sbjct: 419 YNQLMRIEESLGADCVYAGESFRHPKRSH 447
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 815 bits (2109), Expect = 0.0
Identities = 305/445 (68%), Positives = 357/445 (80%), Gaps = 14/445 (3%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
+I + AR+I DSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRDG YLGK
Sbjct: 1 SIEKIWAREILDSRGNPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDGDKQRYLGK 59
Query: 63 GVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GV KAV ++N+ I PAL +G EQ +DN M++ LDGT N K K GANAIL V
Sbjct: 60 GVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLE-LDGTEN-----KSKFGANAILGV 113
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
SLAVCKAGA +++PLY+HIA+L+GN +L+LPVPAFNVINGGSHAGNKLAMQEFMILPVG
Sbjct: 114 SLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVG 173
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
A F++AM++G EVYH LK VIK KYG+DATNVGDEGGFAPNI EN E LEL+ AI KA
Sbjct: 174 AESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKA 233
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GYT K+VIGMDVAASEFY D YDL+FK D S+ I+GD L LY+ F+ DYP+VSI
Sbjct: 234 GYTEKIVIGMDVAASEFY-RDGKYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSI 291
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDPFDQDDW ++K T+ VG +QIVGDDL VTNPKR+E+A++EK CN LLLKVNQIGSV
Sbjct: 292 EDPFDQDDWAAWSKFTANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSV 349
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
TE+I+A +++++ GWGVM SHRSGETEDTFIADL VGL TGQIKTGAPCRSERLAKYNQL
Sbjct: 350 TEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQL 409
Query: 421 LRIEEELGAEAVYAGAKFRAPVEPY 445
+RIEEELG EA +AG FR P +
Sbjct: 410 MRIEEELGDEARFAGHNFRNPSVLH 434
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 812 bits (2100), Expect = 0.0
Identities = 265/444 (59%), Positives = 326/444 (73%), Gaps = 15/444 (3%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKG 63
++ V AR ++DSRGNPTVEV++TT G V R+ VPSGASTG++EALE+RDG S ++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 64 VSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V AV NVN +I PA A D +Q A+D++++ LDGT N K KLGANAIL VS
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLIS-LDGTAN-----KSKLGANAILGVS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
LA +A A K +PLYKH+A+LS +K VLPVP NV+NGGSHAG LA+QEFMI P
Sbjct: 115 LAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPT 174
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA F EA+++G EVYH+LK++ KK+YG A NVGDEGG APNIQ +E L+L+ AI
Sbjct: 175 GAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKA 234
Query: 240 AGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
AG+ GKV IG+D A+SEF+ D YDL+FK N+D S+ ++G L DLY S + YPIVS
Sbjct: 235 AGHDGKVKIGLDCASSEFF-KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVS 293
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPF +DDWE ++ G +QIV DDL VTNPKR+ AI++K +ALLLKVNQIG+
Sbjct: 294 IEDPFAEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGT 351
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
++ESI+A + S AGWGVM SHRSGETEDTFIADL VGL TGQIKTGAP RSERLAK NQ
Sbjct: 352 LSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQ 411
Query: 420 LLRIEEELGAEAVYAGAKFRAPVE 443
LLRIEEELG AV+AG F +
Sbjct: 412 LLRIEEELGDNAVFAGENFHHGDK 435
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 809 bits (2093), Expect = 0.0
Identities = 266/442 (60%), Positives = 321/442 (72%), Gaps = 13/442 (2%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
+I V AR+I DSRGNPT+EV++TT G + R+ VPSGASTG++EA+ELRDG Y GK
Sbjct: 7 SIQKVHAREILDSRGNPTIEVEITTGKG-MFRSCVPSGASTGVHEAVELRDGDKKRYGGK 65
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV KAV NVN IIGPAL GK+ Q +D M++ LDGT N K KLGANAIL S+
Sbjct: 66 GVLKAVENVNTIIGPALLGKNVLNQAELDEMMIK-LDGTNN-----KGKLGANAILGCSM 119
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
++C+A A K +PLYK++AEL+G+K + +PVP FNVINGG+HAGN LAMQEFMI P GA+
Sbjct: 120 SICRAAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGAT 179
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
F EA++M E Y LK VIK KYGQDATNVGDEGGFAPN+ +E L+LL AIAKAGY
Sbjct: 180 NFHEALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGY 239
Query: 243 TGKVVIGMDVAASEFYGSD-KTYDLNFK--EENNDGSQKISGDALKDLYKSFISDYPIVS 299
TGK+ I MD AASEFY + K YDL K + D S D L Y + YPI S
Sbjct: 240 TGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIAS 299
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IEDPF +DDW + K T E G QIVGDDLLVTNP RV+ A+ + CN++L+KVNQIG+
Sbjct: 300 IEDPFAEDDWAAWNKFTVEHG-NFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGT 358
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
+TE+ + ++M+++ GWGVMASHRSGETEDTFIADL VGL QIKTGAPCRSERL KYNQ
Sbjct: 359 LTETFKTIKMAQEKGWGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCKYNQ 418
Query: 420 LLRIEEELGAEAVYAGAKFRAP 441
L+RIEEELG YAG +R
Sbjct: 419 LMRIEEELG-NIPYAGKNWRNS 439
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 808 bits (2089), Expect = 0.0
Identities = 252/438 (57%), Positives = 315/438 (71%), Gaps = 12/438 (2%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
+TI V R++ DSRGNPTVEV+VTT G V R+AVPSGASTG+YEA ELRDG Y+G
Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVG 62
Query: 62 KGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
KG +AV NVN +IGPAL G+D +Q +D M++ LDGT N K KLGANAIL S
Sbjct: 63 KGCLQAVKNVNEVIGPALIGRDELKQEELDTLMLR-LDGTPN-----KGKLGANAILGCS 116
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 181
+A+ KA A K +PLY+++A L+G K L LPVP FNVINGG HAGN L QEFMI PV A
Sbjct: 117 MAISKAAAAAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKA 176
Query: 182 SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241
+ F EA++MG EVYH L+ +IKKKYGQDA NVGDEGGFAP I++ E L +L AI +AG
Sbjct: 177 TSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAG 236
Query: 242 YTGKVVIGMDVAASEFYGSDK-TYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
+ GK I MD AASE Y K Y+L FK + ++ + L++ Y + DYPIVSI
Sbjct: 237 HRGKFAICMDCAASETYDEKKQQYNLTFK---SPEPTWVTAEQLRETYCKWAHDYPIVSI 293
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
EDP+DQDD+ +A +T + K QIVGDDL VTN +R++ AI++K CN+LLLK+NQIG++
Sbjct: 294 EDPYDQDDFAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTI 353
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
+E+I + ++ + GW VM SHRSGETEDT+IADL V L +GQIKTGAPCR ER AK NQL
Sbjct: 354 SEAIASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQL 413
Query: 421 LRIEEELGAEAVYAGAKF 438
LRIEEELGA A + +
Sbjct: 414 LRIEEELGAHAKFGFPGW 431
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 759 bits (1962), Expect = 0.0
Identities = 244/439 (55%), Positives = 309/439 (70%), Gaps = 21/439 (4%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGK 62
I + AR++ DSRGNPTVEV+V T A VPSGASTG +EALELRD + GK
Sbjct: 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGK 68
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV AV NVN+II P + G D Q ID M++ LDGT N K +LGANAILAVSL
Sbjct: 69 GVLMAVENVNSIIRPEILGYDARMQREIDTIMIE-LDGTPN-----KSRLGANAILAVSL 122
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
AV KA A KIPLYK++ G + V+PVP NVINGG HAGN L +QEFMI+PVGA+
Sbjct: 123 AVAKAAAATAKIPLYKYLG---GFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGAT 179
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
EA++MG EVYH LK VI +KYG++A NVGDEGGFAP ++ ++E L+LL ++ KAGY
Sbjct: 180 SISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGY 239
Query: 243 TGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIED 302
+VV +D AASEFY D Y + K K++ + L D YK+ + +YPIVSIED
Sbjct: 240 EDEVVFALDAAASEFY-KDGYYYVEGK--------KLTREELLDYYKALVDEYPIVSIED 290
Query: 303 PFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTE 362
PF ++D+E +A +T E+ +QIVGDDL VTN +R+ K I+ K NALLLKVNQIG+++E
Sbjct: 291 PFHEEDFEGFAMITKEL--DIQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSE 348
Query: 363 SIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLR 422
+++A +++ + G+GV+ SHRSGETEDT IADLSV L +GQIKTGAP R ER AKYNQL+R
Sbjct: 349 AVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIR 408
Query: 423 IEEELGAEAVYAGAKFRAP 441
IE+ELG + YAG FR P
Sbjct: 409 IEQELGL-SKYAGRNFRCP 426
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 666 bits (1721), Expect = 0.0
Identities = 216/440 (49%), Positives = 291/440 (66%), Gaps = 16/440 (3%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-Y 59
M+I IT V AR++ DSRGNPT+EV+V T G R VPSGASTG +EA+ELRDG Y
Sbjct: 11 MSI-ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRY 69
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
G G KAV NVN II A+ G D +Q AID M+ LDGT N K KLGANAIL
Sbjct: 70 GGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIA-LDGTPN-----KGKLGANAILG 123
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VS+AV +A A +IPLY ++ + VLP P N+INGGSH+ +A QEFMILPV
Sbjct: 124 VSIAVARAAADYLEIPLYSYLGGFNTK---VLPTPMMNIINGGSHSDAPIAFQEFMILPV 180
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA FKEA++ G E++H LK ++K + T VGDEGGFAP + ++G+E + AI
Sbjct: 181 GAPTFKEALRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIEA 238
Query: 240 AGYT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPI 297
AGY GK V +G D A+SEFY + ++ + +G+ + D + ++ YPI
Sbjct: 239 AGYVPGKDVFLGFDCASSEFY-DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI 297
Query: 298 VSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357
++IED D++DW+ + LT +G+KVQ+VGDD VTN + + I+E N++L+KVNQI
Sbjct: 298 ITIEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQI 357
Query: 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKY 417
G++TE+ EA+ M+K+AG+ + SHRSGETED+ IAD++V GQIKTG+ R++R+AKY
Sbjct: 358 GTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKY 417
Query: 418 NQLLRIEEELGAEAVYAGAK 437
NQLLRIE++LG A Y G K
Sbjct: 418 NQLLRIEDQLGEVAEYRGLK 437
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 665 bits (1718), Expect = 0.0
Identities = 230/442 (52%), Positives = 292/442 (66%), Gaps = 19/442 (4%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
I + R+I DSRGNPTVE +V G V AA PSGASTG EALELRDG +LGK
Sbjct: 2 KIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGK 61
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV+KAV+ VN I AL GKD +Q ID M+ LDGT N K K GANAILAVSL
Sbjct: 62 GVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMID-LDGTEN-----KSKFGANAILAVSL 115
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 181
A KA A K +PLY+HIAEL+G +PVP N+INGG HA N + +QEFMI PVGA
Sbjct: 116 ANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGA 175
Query: 182 SCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAG 241
KEA++MG EV+HHL V+K K G T VGDEGG+APN+ N E L ++ A+ AG
Sbjct: 176 KTVKEAIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAG 233
Query: 242 YT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVS 299
Y GK + + MD AASEFY D Y L +G++ + + + YPIVS
Sbjct: 234 YELGKDITLAMDCAASEFY-KDGKYVLA-----GEGNKAFTSEEFTHFLEELTKQYPIVS 287
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
IED D+ DW+ +A T +G+K+Q+VGDDL VTN K +++ I++ N++L+K NQIGS
Sbjct: 288 IEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGS 347
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQ 419
+TE++ A++M+K AG+ + SHRSGETED IADL+VG A GQIKTG+ RS+R+AKYNQ
Sbjct: 348 LTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQ 407
Query: 420 LLRIEEELGAEAVYAGAK-FRA 440
L+RIEE LG +A Y G K +
Sbjct: 408 LIRIEEALGEKAPYNGRKEIKG 429
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 661 bits (1708), Expect = 0.0
Identities = 218/437 (49%), Positives = 295/437 (67%), Gaps = 19/437 (4%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGK 62
I V R+I DSRGNPTVE +V + G R PSGASTG +EALELRDG + GK
Sbjct: 27 EIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGK 86
Query: 63 GVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSL 122
GV+KAV N+N I L+G D ++ A+D M+ DGT + K K GANA+LAVS+
Sbjct: 87 GVTKAVQNINTEISEILSGMDASDIYAVDRAMID-ADGTKD-----KSKFGANAVLAVSI 140
Query: 123 AVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAS 182
A KA A +PLY+ + L+ N LPVP N++NGG+HA N + +QEFMI+PVGA
Sbjct: 141 ACAKAAAAALGVPLYRFLGGLNAN---RLPVPMMNILNGGAHAANTVDVQEFMIMPVGAE 197
Query: 183 CFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGY 242
F+EA++ EV+H L ++K K AT+VGDEGGFAP++ ++E +E + A+ AGY
Sbjct: 198 SFREALRQCTEVFHALAGLLKSK--GLATSVGDEGGFAPDLASDEEAIEYILEAVKLAGY 255
Query: 243 T-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
G+ V+ MD A+SE+ +K + + +K + + L +KS YPIVSI
Sbjct: 256 EPGRDFVLAMDAASSEWK-GEKKGEYILPKCK----RKFASEELVAHWKSLCERYPIVSI 310
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
ED D++DWE + +T E+G+K+Q+VGDDL VTN +R+ K IKE+ N++L+K+NQIG+V
Sbjct: 311 EDGLDEEDWEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTV 370
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
+E++EA++M+ +AG+ + SHRSGETEDT IADL+V L TGQIKTGAP RSER+AKYNQL
Sbjct: 371 SETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVALNTGQIKTGAPSRSERVAKYNQL 430
Query: 421 LRIEEELGAEAVYAGAK 437
LRIEEELG AVY G
Sbjct: 431 LRIEEELGDSAVYPGFT 447
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 658 bits (1699), Expect = 0.0
Identities = 212/440 (48%), Positives = 280/440 (63%), Gaps = 22/440 (5%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-Y 59
M TIT + A +I DSR NPT+EV VT S AAVPSGASTG EA+ELRD + Y
Sbjct: 1 MTATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERY 60
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
GKGV +AV NVN I AL G+DP Q ID M++ LDGT N K LGANAIL
Sbjct: 61 GGKGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIE-LDGTEN-----KANLGANAILG 114
Query: 120 VSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPV 179
VSLAV A A+ +PLY+++ G +PVP N+INGG+HA N L QEFMI+PV
Sbjct: 115 VSLAVAYAAANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPV 172
Query: 180 GASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
GA F EA++ G EV+H LK + + G + VGDEGGFAP++ N+ EL+ AI
Sbjct: 173 GAPTFAEALRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIED 230
Query: 240 AGYT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPI 297
A Y GK + + +D A+SE Y + YD + +Q + + + D + YP+
Sbjct: 231 ANYVPGKDIYLALDAASSELY-QNGRYDF-------ENNQL-TSEEMIDRLTEWTKKYPV 281
Query: 298 VSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQI 357
+SIED ++DW + LT + KVQ+VGDD+ VTNP +EK IK+ NA+L+K+NQI
Sbjct: 282 ISIEDGLSENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQI 341
Query: 358 GSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKY 417
G++TE++ V ++K +GV+ SHRSGETEDT IADL+V QIKTG+ CRS+R+AKY
Sbjct: 342 GTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKTGSLCRSDRVAKY 401
Query: 418 NQLLRIEEELGAEAVYAGAK 437
N+LL+IE EL +A YAG +
Sbjct: 402 NRLLQIERELNDQAPYAGKE 421
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 652 bits (1685), Expect = 0.0
Identities = 203/438 (46%), Positives = 277/438 (63%), Gaps = 24/438 (5%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
M + I V+A ++ DSRGNPTV+ +VT SDG V A VPSGASTG EALELRD +
Sbjct: 4 MLV-IEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFG 62
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GKGV KAV+NVN I + G D QT +D+ + + LDGT N LGANA L V
Sbjct: 63 GKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRE-LDGTNN-----YSNLGANATLGV 116
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVG 180
S+A +A A +PLY+++ + + +LPVP N+INGG+HA N + QEFMI+P G
Sbjct: 117 SMATARAAAAALGMPLYRYLGGANAS---ILPVPMCNIINGGAHANNNVDFQEFMIMPFG 173
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKA 240
+ FKEA++ E+Y LK + +T +GDEGGFAPN+ N E ++LL T I KA
Sbjct: 174 FTSFKEALRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIKKA 231
Query: 241 GYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSI 300
GY +V I +DVA++EF+ D Y + +G + S +AL + Y + YPI SI
Sbjct: 232 GYENRVKIALDVASTEFF-KDGKYHM-------EG-KAFSSEALIERYVELCAKYPICSI 282
Query: 301 EDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSV 360
ED ++D+E + KLT ++G K+Q+VGDDL VTN + + I +K NA+L+K NQIG++
Sbjct: 283 EDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTI 342
Query: 361 TESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
T+++ VR++++ + + SHRSGE+ED FIAD +V L TGQIKTGA R ER AKYN+L
Sbjct: 343 TQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGERTAKYNRL 402
Query: 421 LRIEEELGAEAVYAGAKF 438
L IE E Y G K
Sbjct: 403 LEIEFESDE---YLGEKL 417
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 105 bits (262), Expect = 6e-25
Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 75/422 (17%)
Query: 21 TVEVDVTTSDGHVAR--AAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78
++ V + DG VA A + G + L L + + I P
Sbjct: 52 SISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKD-----------FIPVIEKEIAPK 100
Query: 79 LAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYK 138
L G++ T + ++ D +L ++ A+ A A +K+ + +
Sbjct: 101 LIGREITNFKPM----AEEFDKMTVNGN----RLHTAIRYGITQAILDAVAKTRKVTMAE 152
Query: 139 HIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHL 198
I + + VP F ++ + MI +K + H L
Sbjct: 153 VIRDEYNPGAEINAVPVF-----AQSGDDRYDNVDKMI-----------IKEADVLPHAL 196
Query: 199 KAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFY 258
+++K G ++ E ++ L I K +
Sbjct: 197 INNVEEKLGLKG-------------EKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTI 243
Query: 259 GSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDD----WEHYAK 314
G+ D+ D ++ L + + + IE P D +D E
Sbjct: 244 GAAFDVDIK---------AMA--DYIQTLAE-AAKPFHL-RIEGPMDVEDRQKQMEAMRD 290
Query: 315 LTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSK 371
L +E+ G ++V D+ T + V+ K + + +K +G V +A+ K
Sbjct: 291 LRAELDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCK 349
Query: 372 QAGWGVMASHRSGETEDTFIADLSVGLATGQ----IKTGAPCRSERLAKYNQLLRIEEEL 427
G G ET + ++G+A G K G + N++ R+ +
Sbjct: 350 ANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALV 409
Query: 428 GA 429
G
Sbjct: 410 GR 411
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 93.6 bits (232), Expect = 6e-21
Identities = 73/425 (17%), Positives = 132/425 (31%), Gaps = 81/425 (19%)
Query: 21 TVEVDVTTSDGHVAR---AAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGP 77
V V + +G VA AAV + G RD +L + +++ I P
Sbjct: 52 CVSVQLILENGAVAVGDCAAVQYSGAGG-------RD--PLFLAEHFIPFLNDH---IKP 99
Query: 78 ALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLY 137
L G+D + + L +S A+ A A
Sbjct: 100 LLEGRDVDAFLPNARFFDKLRID--------GNLLHTAVRYGLSQALLDATALASGRLKT 151
Query: 138 KHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHH 197
+ + + + +P F G ++ + MIL K + H
Sbjct: 152 EVVCDEWQLPCVPEAIPLF-----GQSGDDRYIAVDKMIL-----------KGVDVLPHA 195
Query: 198 LKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYT--GKVVIGMDVAAS 255
L +++K G ++ +E + L+ I + + +DV
Sbjct: 196 LINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSPRYHPTLHIDV--- 239
Query: 256 EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD----QDDWEH 311
YG+ D + + L K P+ IE P D D
Sbjct: 240 --YGT--------IGLIFDMDPVRCAEYIASLEKE-AQGLPL-YIEGPVDAGNKPDQIRM 287
Query: 312 YAKLTSEV---GEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVR 368
+T E+ G V+IV D+ + + +C+ + +K +G + ++AV
Sbjct: 288 LTAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVL 346
Query: 369 MSKQAGWGVMASHRSGETEDTFIADLSVGLATG--QI--KTGAPCRSERLAKYNQLLRIE 424
+ G ETE + + V LA ++ K G +N++ R
Sbjct: 347 YCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTI 406
Query: 425 EELGA 429
L
Sbjct: 407 ALLQT 411
>3qld_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, isomerase; HET: MSE; 1.85A
{Alicyclobacillus acidocaldarius LAA1}
Length = 388
Score = 48.1 bits (115), Expect = 3e-06
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE P +DDW AKL + + + + D+ + + + ++ + L +K
Sbjct: 214 AYDLQFIEQPLPEDDWFDLAKLQASL--RTPVCLDESVRS-VRELKLTARLGAARVLNVK 270
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
++G ++ A+ ++ +AG
Sbjct: 271 PGRLGGFGATLRALDVAGEAGMAAW 295
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 48.1 bits (115), Expect = 3e-06
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE PF D+ +A L ++ K +I D+ + + K VE+A +C A+ LK
Sbjct: 226 QYDLEMIEQPFGTKDFVDHAWLQKQL--KTRICLDENIRS-VKDVEQAHSIGSCRAINLK 282
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
+ ++G ++ +++ V E ++++ + G S R
Sbjct: 283 LARVGGMSSALKIAEYCALNEILVW-CGGMLEAGVGRAHNIALAARNEFVFPGDISASNR 341
Query: 414 L 414
Sbjct: 342 F 342
Score = 30.4 bits (69), Expect = 1.2
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 25/102 (24%)
Query: 5 ITAVKARQI-------F-DSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEALEL 52
+ F S G +++ +G G E
Sbjct: 22 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGI-----------HGYGELEA- 69
Query: 53 RDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYM 94
DY + +S A+ + + P LA + + I
Sbjct: 70 -FPLPDYTEETLSSAILIIKEQLLPLLAQRKIRKPEEIQELF 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 5e-06
Identities = 42/315 (13%), Positives = 84/315 (26%), Gaps = 128/315 (40%)
Query: 10 ARQIFD-----------------SRGNPT-VEVDVTTSDGHVARAAVPSGASTGIYEALE 51
A+ +++ NP + + G R Y A+
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN---------YSAM- 1691
Query: 52 LRDGGSDYLGKGVSKAVSNVNAIIGPALAG---KDPTEQTAIDNYMVQQLDGTVNEWGWC 108
+ + D GK ++ + I + L T
Sbjct: 1692 IFETIVD--GKLKTE---KIFKEINEHSTSYTFRSEKGL----------LSATQF----- 1731
Query: 109 KQKLGANAILAVSLAVCKAGAHVKK---IPLYKHIA-----ELSGNKNLVLPVPAFNVIN 160
Q A+ + A + +K IP A E + L
Sbjct: 1732 TQP----ALTLMEKAAFED---LKSKGLIPADATFAGHSLGEYAA---LA---------- 1771
Query: 161 GGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFA 220
S A ++ + +++ V++ ++ +D + G A
Sbjct: 1772 --SLAD---------VMS-----IESLVEV---VFYRGMT-MQVAVPRDELGRSNYGMIA 1811
Query: 221 PNIQE-----NKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDG 275
N ++E L+ + + K TG +V ++ N+ N +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKR--TGWLV---EIV-------------NY---NVEN 1850
Query: 276 SQK-ISGD--ALKDL 287
Q +GD AL +
Sbjct: 1851 QQYVAAGDLRALDTV 1865
Score = 48.1 bits (114), Expect = 5e-06
Identities = 86/539 (15%), Positives = 152/539 (28%), Gaps = 208/539 (38%)
Query: 5 ITAVKARQIF-DSRGNPTVEV---DVTTSD--------GHVARAAVPSGASTGIYEALE- 51
A + ++ F PT D T+ G+V+ PS + L
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ-FDQVLNL 86
Query: 52 -LRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQ 110
L + + YL ++++A+ L ++ T K
Sbjct: 87 CLTEFENCYLEG------NDIHALAA-KLLQENDTTLVKTKE--------------LIKN 125
Query: 111 KLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLA 170
+ A + A L++ + E GN LV F GG
Sbjct: 126 YITARIMAKRPFDKKSNSA------LFRAVGE--GNAQLVA---IF----GG-------- 162
Query: 171 MQEFMILPVGAS--CFKEAMKMGVEVYHHL-KAVI-----------------KKKYGQ-- 208
Q G + F+E ++ + YH L +I +K + Q
Sbjct: 163 -Q-------GNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 209 -------DATNVGDEGGFA------PNIQENKEGL-ELLNTAIA--KAGYT--------- 243
+ +N D+ P I G+ +L + + G+T
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 244 GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFI-----SDYPIV 298
G + + +++ +F A+ L+ FI YP
Sbjct: 269 GATGHSQGLVTAVAIAETDSWE-SFFV--------SVRKAITVLF--FIGVRCYEAYPNT 317
Query: 299 SIEDPFDQDDWEHYAKLTSEVGEKV---QIVGDDLLVTNPKR--VEKAIKEKTCNALLLK 353
S+ +D E+ E V L ++N + V+ + + N+ L
Sbjct: 318 SLPPSILEDSLEN--------NEGVPSPM-----LSISNLTQEQVQDYVNK--TNSHLPA 362
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHR----SGETEDTFIADLSVGLATGQIKTGAP- 408
Q+ I ++ + SG + L GL K AP
Sbjct: 363 GKQV-----EI-----------SLVNGAKNLVVSGPPQ-----SL-YGLNLTLRKAKAPS 400
Query: 409 ----CR---SERLAK-YNQLLRI----------------EEELGAEAV-YAGAKFRAPV 442
R SER K N+ L + ++L V + + PV
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 40.4 bits (94), Expect = 0.001
Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 54/176 (30%)
Query: 275 GSQKIS-GDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVT 333
GSQ+ G DLYK+ +D +++ D H G + D+++
Sbjct: 1625 GSQEQGMG---MDLYKTS----KAA--QDVWNRAD-NH---FKDTYGFSIL----DIVIN 1667
Query: 334 NPKRVE--------KAIKEKTCNALLLKVNQIGSV-TESI--EAVRMSKQAGWGVMASHR 382
NP + K I+E +A++ + G + TE I E S +
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTF----RSE 1722
Query: 383 SGE---TEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAG 435
G T+ T A + A + L+ + + A+A +AG
Sbjct: 1723 KGLLSATQFTQPALTLMEKAA-----------------FEDLKSKGLIPADATFAG 1761
Score = 38.5 bits (89), Expect = 0.005
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 36/100 (36%)
Query: 293 SDYPIVSIEDP------FDQDDWEHY-AKLTSEVGEKVQIV------------GDDLLVT 333
S+Y +++I +P F Q+ ++ ++ G V+IV GD
Sbjct: 1805 SNYGMIAI-NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD----- 1858
Query: 334 NPKRVEKAIKEKTCNAL-LLKVNQIG----SVTESIEAVR 368
+A+ + N L +K+ +I + S+E V
Sbjct: 1859 -----LRAL-DTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 35.4 bits (81), Expect = 0.044
Identities = 56/307 (18%), Positives = 90/307 (29%), Gaps = 111/307 (36%)
Query: 190 MGVEVYHHLKAV----------IKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAK 239
MG+++Y KA K YG ++ + N L +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI---------VINNPVNLTIHFG---- 1677
Query: 240 AGYTGKVVIGMDVAASEF----YGSDKTYDLNFKEENNDGSQKI-SGD------------ 282
G GK I + +A F G KT + FKE N + +
Sbjct: 1678 -GEKGK-RIRENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 283 AL--------KDLYKSFISDYPIV-------------------SIEDPFDQDDWEHYAKL 315
AL +DL + SIE ++
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES---------LVEV 1785
Query: 316 TSEVGEKVQIV--GDDLLVT-------NPKRVEKAIKEKTCNALLLKVNQIGSVT-ESIE 365
G +Q+ D+L + NP RV + ++ + V ++G T +E
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV---VERVGKRTGWLVE 1842
Query: 366 AV---RMSKQAGWGVMASHRSGETE--DTFIADLSVGLATGQIKTGAPCRSERLAKYNQL 420
V ++Q V A G+ DT L+ + +I L K L
Sbjct: 1843 IVNYNVENQQY---VAA----GDLRALDTVTNVLNF-IKLQKIDI------IELQKSLSL 1888
Query: 421 LRIEEEL 427
+E L
Sbjct: 1889 EEVEGHL 1895
Score = 34.3 bits (78), Expect = 0.092
Identities = 85/479 (17%), Positives = 138/479 (28%), Gaps = 155/479 (32%)
Query: 11 RQIFDSRGNPTVEVDVTTSDGHVAR-AAVPSGASTGIYEALELRD--------GGSDYLG 61
R ++ + + V + S ++ A + L + + DYL
Sbjct: 174 RDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL- 231
Query: 62 KGVSKAVSNVNAIIG-PALA---------GKDPTEQTAIDNYMVQQLDGTVNEWGWCKQK 111
+S +S +IG LA G P E + L G Q
Sbjct: 232 --LSIPISCP--LIGVIQLAHYVVTAKLLGFTPGE-------LRSYLKGATG----HSQG 276
Query: 112 LGANAILAVSLAVCKAGAH-----VKKIPLYKHIA----ELSGNKNLVLPVPAFNVINGG 162
L + AV++A + K I + I E N +L + ++ N
Sbjct: 277 L----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN- 331
Query: 163 SHAGNKLAMQEFMILPV-GASCFKEAMKMGVE-VYHHL----KAVIKKKYGQDATNVGDE 216
G M L + + +E ++ V HL + I G V
Sbjct: 332 --EGVPSPM-----LSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-- 380
Query: 217 GGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGS 276
G + L LN + KA K G+D + F S
Sbjct: 381 -GPP-------QSLYGLNLTLRKA----KAPSGLDQSRIPF------------------S 410
Query: 277 QKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH--Y-----AKLTSEVGEK-VQIVGD 328
++ LK F+ P+ S PF H + ++ + V
Sbjct: 411 ER----KLK-FSNRFL---PVAS---PF------HSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 329 DLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRM--SKQAGWGVMASHRSGET 386
D+ + P V T + L+V GS++E I V W + + T
Sbjct: 454 DIQI--P--VYD-----TFDGSDLRVLS-GSISERI--VDCIIRLPVKW--ETTTQFKAT 499
Query: 387 EDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAPVEPY 445
I D G G L R ++ G + AG P + Y
Sbjct: 500 H---ILDF------G---PGGASGLGVLTH-----RNKDGTGVRVIVAGTLDINPDDDY 541
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 47.0 bits (112), Expect = 6e-06
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
++ IE+PF + I D+ T+ + I+ ++LK
Sbjct: 190 REQVLYIEEPFKDISMLDEVADGT----IPPIALDEK-ATSLLDIINLIELYNVKVVVLK 244
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
++G + + A+ K G V+
Sbjct: 245 PFRLGGIDKVQTAIDTLKSHGAKVV 269
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 46.5 bits (111), Expect = 1e-05
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+Y + IE P DD +A+L + + + D+ + + KA+ + LK
Sbjct: 213 EYDLTYIEQPLAWDDLVDHAELARRI--RTPLCLDESVAS-ASDARKALALGAGGVINLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
V ++G ES +++ G V E+ ++ + + G + R
Sbjct: 270 VARVGGHAESRRVHDVAQSFGAPVW-CGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASR 328
Query: 414 L 414
Sbjct: 329 Y 329
Score = 31.5 bits (72), Expect = 0.54
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 5 ITAVKARQIF--------DSRGNPTVE---VDVTTSDGHVARAAVPSGASTGIYEALELR 53
I A + S G T + + + +G G+ E
Sbjct: 10 IEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGEGVQ-----------GVAEGTM-- 56
Query: 54 DGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYM 94
+ Y + ++ A+ + PA+ G+ A+ + +
Sbjct: 57 EARPMYREETIAGALDLLRGTFLPAILGQTFANPEAVSDAL 97
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A
{Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A*
1sjb_A* 1sjc_A*
Length = 368
Score = 46.5 bits (111), Expect = 1e-05
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ ++ IE P +++D +A+L + + I D+ +V+ + AIK + +K
Sbjct: 207 PFGLLLIEQPLEEEDVLGHAELARRI--QTPICLDESIVS-ARAAADAIKLGAVQIVNIK 263
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
++G E+ + G V
Sbjct: 264 PGRVGGYLEARRVHDVCAAHGIPVW 288
Score = 29.9 bits (68), Expect = 1.4
Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 54/222 (24%)
Query: 5 ITAVKARQIF--------DSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEALEL 52
++ V+ R++ S G + + T G G E + +
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG------------EGWGECVTM 50
Query: 53 RDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKL 112
G Y + A + + PAL + + + K
Sbjct: 51 --AGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLL---------------AKF 93
Query: 113 GAN--AILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLA 170
+ A A+ +AV A + L ++ VP + G +L
Sbjct: 94 KGHRMAKGALEMAVLDAELRAHERSFAAE---LGSVRD---SVPCGVSV-GIMDTIPQLL 146
Query: 171 MQEFMILPVGASCFKEAMKMGVEV-YHHLKAVIKKKYGQDAT 211
L G K +K+ ++AV ++++G D
Sbjct: 147 DVVGGYLDEGYVRIK--LKIEPGWDVEPVRAV-RERFGDDVL 185
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 46.5 bits (111), Expect = 1e-05
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE PF DD+ +A+L E+ K +I D+ + + K + A+ +C ++ LK
Sbjct: 226 HYQLAMIEQPFAADDFLDHAQLQREL--KTRICLDENIRS-LKDCQVALALGSCRSINLK 282
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ ++G + E+++ ++ V
Sbjct: 283 IPRVGGIHEALKIAAFCQENDLLVW 307
Score = 33.0 bits (76), Expect = 0.16
Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 52/214 (24%)
Query: 3 ITITAVKARQI-------F-DSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEAL 50
+ I +++ Q+ F S G +T G+ G E +
Sbjct: 20 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGN-----------QGFGELV 68
Query: 51 ELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQ 110
DY+ + + + + P L + + + +
Sbjct: 69 AF--EQPDYVQETLVTERFIIQQHLIPLLLTEAIEQPQEVSTIF---------------E 111
Query: 111 KLGAN--AILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNK 168
++ + A+ A+ A ++ L + + +P + G +
Sbjct: 112 EVKGHWMGKAALETAIWDLYAKRQQKSLTEF---FGPTRR---KIPVGISL-GIQEDLPQ 164
Query: 169 LAMQEFMILPVGASCFKEAMKMGVEV-YHHLKAV 201
L Q + + G K +K+ + +
Sbjct: 165 LLKQVQLAVEKGYQRVK--LKIRPGYDVEPVALI 196
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 46.1 bits (110), Expect = 1e-05
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + IE P DD +AKL E+ I D+ L ++ KAI+ +K
Sbjct: 206 ELRLDYIEQPLAYDDLLDHAKLQREL--STPICLDESLTG-AEKARKAIELGAGRVFNVK 262
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
++G ES+ +++ AG + E +L + G K G + R
Sbjct: 263 PARLGGHGESLRVHALAESAGIPLW-MGGMLEAGVGRAHNLHLATLPGFTKPGDVSSASR 321
Query: 414 L 414
Sbjct: 322 Y 322
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 45.5 bits (108), Expect = 2e-05
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 282 DALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKA 341
+A + L + +S + + SIE P Q W A L + + I D+ L+ +++
Sbjct: 223 NAPQRLKR--LSQFHLHSIEQPIRQHQWSEMAALCANS--PLAIALDEELIG-LGAEQRS 277
Query: 342 IKEKTCNA--LLLKVNQIGSVTESIEAVRMSKQAGWGVM 378
++LK + +G + + + ++++ G G
Sbjct: 278 AMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIGFW 316
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 45.4 bits (108), Expect = 3e-05
Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + +E P + ++ +LT + G V I+ D+ L + + ++ +A LK
Sbjct: 213 EAGVELVEQPVPRANFGALRRLTEQNG--VAILADESLSS-LSSAFELARDHAVDAFSLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ +G + +++ +++ AG
Sbjct: 270 LCNMGGIANTLKVAAVAEAAGISSY 294
Score = 31.5 bits (72), Expect = 0.54
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 28/129 (21%)
Query: 10 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69
+ + V+V + G V GI E + GG + +
Sbjct: 22 SFTTVHKQSYVIVQV---KAGGLV-----------GIGEGGSV--GGPTWGSESAETIKV 65
Query: 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGA 129
++ + P L GKD + + M + + G +A A+ +A+ A
Sbjct: 66 IIDNYLAPLLVGKDASNLSQARVLMDRAVTG------------NLSAKAAIDIALHDLKA 113
Query: 130 HVKKIPLYK 138
+ +
Sbjct: 114 RALNLSIAD 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 4e-05
Identities = 60/397 (15%), Positives = 114/397 (28%), Gaps = 135/397 (34%)
Query: 26 VTTSDGHVARAAVPSGASTGIYEALELRDGG----------SDYLGKGVSK---AVSNVN 72
+TT V A+T + +L+ YL V N
Sbjct: 270 LTTRFKQVTDFL---SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 73 ----AIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAG 128
+II ++ +D DN+ D KL I+ SL V +
Sbjct: 327 PRRLSIIAESI--RDGLAT--WDNWKHVNCD-----------KL--TTIIESSLNVLEP- 368
Query: 129 AHVKKIPLYKHIAELSGNKNLVLP----VPAFNVI----NGGSHAGNKLAMQEFMILPVG 180
A +K ++ ++ V P +P ++ + + + +
Sbjct: 369 AEYRK--MFDRLS--------VFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKL----HK 413
Query: 181 ASCFKEAMKMGVEVYHHLKAVIKKKYGQDAT---------NVG---DEGGFAPNIQEN-- 226
S ++ K + +K K + N+ D P +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 227 --KEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTY-DLNF---KEENNDGSQKIS 280
G L + ++ + F + D F K ++ + S
Sbjct: 474 YSHIGHHL-----KNIEHPERM--------TLF---RMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 281 G---DALKDL--YKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNP 335
G + L+ L YK +I D DP Y +L + + + + + ++L
Sbjct: 518 GSILNTLQQLKFYKPYICD------NDP-------KYERLVNAILDFLPKIEENL----- 559
Query: 336 KRVEKAIKEKTCNALLLKVNQIGSVTES----IEAVR 368
I K + L +I + E EA +
Sbjct: 560 ------ICSKYTDLL-----RIALMAEDEAIFEEAHK 585
Score = 36.0 bits (82), Expect = 0.032
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 38/159 (23%)
Query: 275 GSQKIS-GDALKDLYKSFISDYPIVSIEDP----FDQDDWEHYAKLTSEVGEKVQIVGDD 329
G + D L +F+ ++ ++D +++ +H V +++
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--W 69
Query: 330 LLVTNPKR-VEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETED 388
L++ + V+K ++E +L++N + I+ +Q S T
Sbjct: 70 TLLSKQEEMVQKFVEE------VLRIN-YKFLMSPIKTE--QRQ---------PSMMTR- 110
Query: 389 TFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEEL 427
+I Q+ AKYN + R++ L
Sbjct: 111 MYIEQRDRLYNDNQV----------FAKYN-VSRLQPYL 138
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 43.9 bits (104), Expect = 7e-05
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ E P + +L + + I D+ L++ + E K N +K
Sbjct: 229 AAKCLFHEQPLHYEALLDLKELGERI--ETPICLDESLIS-SRVAEFVAKLGISNIWNIK 285
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ ++G + E+I+ +++ G +
Sbjct: 286 IQRVGGLLEAIKIYKIATDNGIKLW 310
Score = 29.7 bits (67), Expect = 2.1
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 16/91 (17%)
Query: 10 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69
+ +R + VE+ G E+ YLG+ +
Sbjct: 28 SSGTCYTRRSLVVEI---REGDL-----------FGYGESAPF--EEPFYLGETLETTKV 71
Query: 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
+ + P + GK+P ++ + + G
Sbjct: 72 ILKNHLLPMILGKEPLSIEEFNHLIKNGIRG 102
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 43.0 bits (102), Expect = 1e-04
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 11/151 (7%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
I IE P +++ +L + I+ D+ + + +E + LK
Sbjct: 219 GNGIDLIEQPISRNNRAGMVRLNASSP--APIMADESIEC-VEDAFNLAREGAASVFALK 275
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSER 413
+ + G ++ +++ AG G+ E +A L ++
Sbjct: 276 IAKNGGPRATLRTAAIAEAAGIGLY-GGTMLEGGIGTLASAHAFLTLNKLSWDTEL---- 330
Query: 414 LAKYNQLLRIEEELGAEAVYAGAKFRAPVEP 444
+ LL E+ L VY P
Sbjct: 331 ---FGPLLLTEDILAEPPVYRDFHLHVSKAP 358
Score = 36.5 bits (85), Expect = 0.014
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 37/149 (24%)
Query: 2 AITITAVKARQIF--------DSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEA 49
A I +++ + + V + + +DG G+ E+
Sbjct: 5 ASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIE-----------GLGES 53
Query: 50 LELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCK 109
+ GG Y + +N++ + P L G+D + A + Q + G
Sbjct: 54 TTI--GGLAYGNESPDSIKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGN-------- 103
Query: 110 QKLGANAILAVSLAVCKAGAHVKKIPLYK 138
A + A+ A +P+ +
Sbjct: 104 ----TFAKSGIESALLDAQGKRLGLPVSE 128
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 42.7 bits (101), Expect = 2e-04
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P D +L+ ++ I+ D+ + T + ++ A LK
Sbjct: 218 AMGVDLIEQPVSAHDNAALVRLSQQIE--TAILADEAVAT-AYDGYQLAQQGFTGAYALK 274
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + R+++ AG G+
Sbjct: 275 IAKAGGPNSVLALARVAQAAGIGLY 299
Score = 36.5 bits (85), Expect = 0.013
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 39/151 (25%)
Query: 1 MAITITAVKARQIF--------DSRGN----PTVEVDVTTSDGHVARA-AVPSGASTGIY 47
+ T+ +++ + S V V +T SDG A G +
Sbjct: 3 LTATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGV 62
Query: 48 EALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGW 107
E+ E S + + P L G+ A+ M + G
Sbjct: 63 ESPEA--------------ISSAITHYLTPLLKGQPADNLNALTARMNGAIKGN------ 102
Query: 108 CKQKLGANAILAVSLAVCKAGAHVKKIPLYK 138
A A+ A+ A +P+
Sbjct: 103 ------TFAKSAIETALLDAQGKALGLPVSA 127
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P +E A+L V ++ D+ + P+ + +A E C+ + +K
Sbjct: 217 QFQPDFIEQPVRAHHFELMARLRGLT--DVPLLADESVYG-PEDMVRAAHEGICDGVSIK 273
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381
+ + G +T + R++ G
Sbjct: 274 IMKSGGLTRAQTVARIAAAHGLMAYGGD 301
Score = 30.7 bits (70), Expect = 0.95
Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 31/114 (27%)
Query: 1 MAITITAVKARQI--------FDSRGN-----PTVEVDVTTSDGHVARA-AVPSGASTGI 46
+ I A+ + G V + + G A P TG
Sbjct: 6 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGT 65
Query: 47 YEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
EA + + ++ + P + G+ ++ AI + + +
Sbjct: 66 PEA-----------------SYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAH 102
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/85 (16%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P +++ + +L+ +V I+ D+ L T ++++ + LK
Sbjct: 213 ALGVELIEQPVGRENTQALRRLSDNN--RVAIMADESLST-LASAFDLARDRSVDVFSLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ +G V+ + + +++ +G
Sbjct: 270 LCNMGGVSATQKIAAVAEASGIASY 294
Score = 28.8 bits (65), Expect = 3.9
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 28/129 (21%)
Query: 10 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69
+ + V V S+G V G+ E GG + +
Sbjct: 22 SITTVHQQSYVIVRV---YSEGLV-----------GVGEGG--SVGGPVWSAECAETIKI 65
Query: 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGA 129
V + P L G D + M + + G A+A AV +A+ A
Sbjct: 66 IVERYLAPHLLGTDAFNVSGALQTMARAVTG------------NASAKAAVEMALLDLKA 113
Query: 130 HVKKIPLYK 138
+ + +
Sbjct: 114 RALGVSIAE 122
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A*
3dg7_A*
Length = 367
Score = 41.5 bits (98), Expect = 3e-04
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
D ++ E+ DD +L ++ + + D+ + T P V + + + A+ +K
Sbjct: 210 DLDLLFAEELCPADDVLSRRRLVGQLD--MPFIADESVPT-PADVTREVLGGSATAISIK 266
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ G T S +++ G ++
Sbjct: 267 TARTG-FTGSTRVHHLAEGLGLDMV 290
Score = 32.6 bits (75), Expect = 0.22
Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 27/102 (26%)
Query: 5 ITAVKARQIF--------DSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEALEL 52
I A+ A + G V V V T DG V G+ EA
Sbjct: 3 IVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIV-----------GVAEA--- 48
Query: 53 RDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYM 94
G+ + V+ + PAL G TE+ M
Sbjct: 49 -PPRPFTYGETQTGIVAVIEQYFAPALIGLTLTEREVAHTRM 89
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 41.1 bits (97), Expect = 4e-04
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ + E P DD E ++T V ++ D+ + T P +K + + + LK
Sbjct: 219 EAGVELFEQPTPADDLETLREITRRT--NVSVMADESVWT-PAEALAVVKAQAADVIALK 275
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ G + ES + +++ G
Sbjct: 276 TTKHGGLLESKKIAAIAEAGGLACH 300
Score = 32.6 bits (75), Expect = 0.23
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 28/115 (24%)
Query: 1 MAIT---ITAVKARQIF--------DSRGN----PTVEVDVTTSDGHVARAAVPSGASTG 45
M+++ I V++R + + + V V +G + G
Sbjct: 1 MSLSDLTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVI-----------G 49
Query: 46 IYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
E + GG + G+ V + V+ + P L G+ +E I + + +
Sbjct: 50 YGEGVV--PGGPWWGGESVETMKALVDGYLAPVLIGRAVSELAGIMADLERVVAR 102
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 40.3 bits (95), Expect = 8e-04
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
I IE P DD + A + S+ + ++ D+ L + + + + IK + + + +K
Sbjct: 211 HLNIDWIEQPVIADDIDAMAHIRSKT--DLPLMIDEGLKS-SREMRQIIKLEAADKVNIK 267
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + +++ ++ AG
Sbjct: 268 LMKCGGIYPAVKLAHQAEMAGIECQ 292
Score = 33.4 bits (77), Expect = 0.15
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 41/136 (30%)
Query: 20 PTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPAL 79
P++ V + T +G + G E G+ + + PAL
Sbjct: 30 PSIIVKMETDEGII-----------GYGEG----VADDHVTGESWESTFHTLKHTLTPAL 74
Query: 80 AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAV----CKA-------- 127
G++P I + M + G A A+ +A K
Sbjct: 75 IGQNPMNIEKIHDMMDNTIYG------------VPTAKAAIDIACFDIMGKKLNQPVYQL 122
Query: 128 --GAHVKKIPLYKHIA 141
G + ++ P+ ++
Sbjct: 123 IGGRYHEEFPVTHVLS 138
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 40.4 bits (95), Expect = 8e-04
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
I +E P +DD K+T I+ D+ + T P++ + ++ ++ + + +K
Sbjct: 212 GLGIELVEQPVHKDDLAGLKKVTDATD--TPIMADESVFT-PRQAFEVLQTRSADLINIK 268
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G ++ + + M++ G M
Sbjct: 269 LMKAGGISGAEKINAMAEACGVECM 293
Score = 32.7 bits (75), Expect = 0.25
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 10 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVS 69
A + + +V V +T G V G EA G + S
Sbjct: 22 ALRTVYTA--ESVIVRITYDSGAV-----------GWGEA----PPTLVITGDSMDSIES 64
Query: 70 NVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
++ ++ PAL GK AI + + L G
Sbjct: 65 AIHHVLKPALLGKSLAGYEAILHDIQHLLTG 95
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 39.6 bits (93), Expect = 0.002
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P D + A++T + +V D+ + K E+ I E+ CN + +K
Sbjct: 213 SLNVEIIEQPVKYYDIKAMAEITKFS--NIPVVADESVFD-AKDAERVIDEQACNMINIK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + E+ + +++ AG M
Sbjct: 270 LAKTGGILEAQKIKKLADSAGISCM 294
Score = 34.6 bits (80), Expect = 0.058
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 41/151 (27%)
Query: 1 MAITITAVKARQI-------FD-SRGN----PTVEVDVTTSDGHVARA-AVPSGASTGIY 47
M I +K I F + + ++ V++T +G A + A
Sbjct: 1 MVSKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTA----- 55
Query: 48 EALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGW 107
G + + I P + G D ++ +++
Sbjct: 56 -----------ITGDTLQGMQYIIREIFAPVILGSDLSDYKQTLELAFKKVMF------- 97
Query: 108 CKQKLGANAILAVSLAVCKAGAHVKKIPLYK 138
+ A +A+ LA A + I + K
Sbjct: 98 -----NSAAKMAIDLAYHDLLAKEQDISVAK 123
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A
{Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A*
3k1g_A* 3kum_A*
Length = 354
Score = 39.6 bits (93), Expect = 0.002
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
DY I +E P + D E +TS+V I+ D+ + + +K+ T + + +K
Sbjct: 208 DYQIELVEQPVKRRDLEGLKYVTSQVN--TTIMADESCFD-AQDALELVKKGTVDVINIK 264
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + E+++ ++ + AG M
Sbjct: 265 LMKCGGIHEALKINQICETAGIECM 289
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase,
PSI, protein structure initiative; 1.42A {Synechococcus
elongatus} PDB: 3h7v_A
Length = 332
Score = 39.2 bits (92), Expect = 0.002
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 293 SDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLL 352
+ I +E P D W+ L V I D+ +V+ V++ + ++
Sbjct: 188 GNGKIEYVEQPLPPDQWQALLSLAQTVT--TAIALDESVVS-AAEVQRWVDRGWPGFFVI 244
Query: 353 KVNQIGSVTESIEAVRMSKQAGWGVMAS 380
K G +S+ + ++ S
Sbjct: 245 KTALFGDP-DSLSLLLRRGLEPQRLVFS 271
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein
structure INI NEW YORK SGX research center for
structural genomics, nysgx; 2.20A {Azorhizobium
caulinodans}
Length = 377
Score = 38.0 bits (89), Expect = 0.004
Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ IE P + + A + + I+ D+ + + ++ + +A+ +K
Sbjct: 216 AFRPTFIEQPVPRRHLDAMAGFAAAL--DTPILADESCFD-AVDLMEVVRRQAADAISVK 272
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381
+ + G + ++ + ++ AG
Sbjct: 273 IMKCGGLMKAQSLMAIADTAGLPGYGGT 300
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible
chloromuconate cycloisomerase...; (beta/alpha)8-barrel;
3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Length = 368
Score = 36.9 bits (86), Expect = 0.010
Identities = 17/85 (20%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y I E+P ++ + K+ ++ I+ D+ E+ I+ + C++ LK
Sbjct: 209 PYNIQHCEEPVSRNLYTALPKIRQAC--RIPIMADESCCN-SFDAERLIQIQACDSFNLK 265
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+++ +T ++ +R+++QA V
Sbjct: 266 LSKSAGITNALNIIRLAEQAHMPVQ 290
Score = 31.5 bits (72), Expect = 0.52
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 18/82 (21%)
Query: 20 PTVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78
V V + T+ GH+ P G E+++ V +
Sbjct: 30 NNVIVRIHTASGHIGYGECSPFMTIHG--ESMD---------------TAFIVGQYLAKG 72
Query: 79 LAGKDPTEQTAIDNYMVQQLDG 100
L G + + M + G
Sbjct: 73 LIGTSCLDIVSNSLLMDAIIYG 94
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 36.6 bits (85), Expect = 0.014
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 295 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354
I +E+P D E G + I D+ L A+++K
Sbjct: 186 DRIAFLEEPCKTRDDS--RAFARETG--IAIAWDESLREPDFAFVAEEG---VRAVVIKP 238
Query: 355 NQIGSVTESIEAVRMSKQAGWGVMAS 380
GS+ + E V+ + G + S
Sbjct: 239 TLTGSLEKVREQVQAAHALGLTAVIS 264
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 36.2 bits (84), Expect = 0.019
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
Y + IE P D + A+L +V I D+ + I + + L++K
Sbjct: 214 KYNLSKIEQPLPAWDLDGMARLRGKV--ATPIYADESAQE-LHDLLAIINKGAADGLMIK 270
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ G + ++ + +++ A V+
Sbjct: 271 TQKAGGLLKAQRWLTLARLANLPVI 295
>2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius
SP}
Length = 377
Score = 35.3 bits (82), Expect = 0.029
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
D P V +E P + +E + + D+ + V A + +K
Sbjct: 214 DIPFV-MEQPCN--SFEDLEAIRPLCH--HALYMDEDGTS-LNTVITAAATSLVDGFGMK 267
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
V++IG +
Sbjct: 268 VSRIGGLQHMRAFRDFCAARNLPHT 292
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain
protein; putative racemase, nysgrc, structural genomics,
PSI-biology; 2.00A {Paracoccus denitrificans}
Length = 391
Score = 34.6 bits (80), Expect = 0.056
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
+E P + E A + V I D+ V +A + C+ +K+ +IG
Sbjct: 240 LEQPCN--TLEEIAAIRGRVQ--HGIYLDESGED-LSTVIRAAGQGLCDGFGMKLTRIGG 294
Query: 360 VTESIEAVRMSKQAGWGVM 378
+ + + +
Sbjct: 295 LQQMAAFRDICEARALPHS 313
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 34.2 bits (79), Expect = 0.069
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 300 IEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGS 359
E P + + A + + D+ LVT + + ++ +K+N++G
Sbjct: 219 FEQPGE--TLDDIAAIRPLHS--APVSVDECLVT-LQDAARVARDGLAEVFGIKLNRVGG 273
Query: 360 VTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERL 414
+T + ++ G + +G + L + A + +
Sbjct: 274 LTRAARMRDIALTHGIDMFV-MATGGSVLADAEALHLAATIPDHACHAVWACQDM 327
Score = 30.0 bits (68), Expect = 1.8
Identities = 19/153 (12%), Positives = 36/153 (23%), Gaps = 43/153 (28%)
Query: 1 MAITITAVKARQI-----------FDSRGNPTVE---VDVTTSDGHVARA-AVPSGASTG 45
M++ IT + Q+ ++ V + T G P G +
Sbjct: 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYV 60
Query: 46 IYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEW 105
+ + P + G DP ++ M L G
Sbjct: 61 PAHG----------------PGIRAGIETMAPFVLGLDPRRLLDVERAMDIALPG----- 99
Query: 106 GWCKQKLGANAILAVSLAVCKAGAHVKKIPLYK 138
A + +A +P+
Sbjct: 100 -------HLYAKSPIDMACWDIAGQAAGLPIAD 125
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 34.2 bits (79), Expect = 0.087
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 44/162 (27%)
Query: 1 MAITITAVKARQIF--------DSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYE 48
+IT V+A S G P V V+V SDG G E
Sbjct: 8 ASITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGA-----------VGWGE 56
Query: 49 ALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWC 108
++ G V ++ P L + + ++ + + G
Sbjct: 57 V------WCNFPACGAEHRARLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTG-- 108
Query: 109 KQKLGANAILAVSLAV----CKA---------GAHVKKIPLY 137
+ A AI + +A+ + G +I +Y
Sbjct: 109 EPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVY 150
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein, hypertherm
oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 33.5 bits (76), Expect = 0.15
Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 22/222 (9%)
Query: 196 HHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAAS 255
LKAV+ + G V D+ QE + + GY G A
Sbjct: 194 KKLKAVVIR--GTKEIPVADKEELKKLSQEAYNEI------LNSPGYPFWKRQGTMAAVE 245
Query: 256 EFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKL 315
+ NF + + ++ I G ++ + D ++L
Sbjct: 246 WCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESEL 305
Query: 316 TSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNAL----LLKVNQIGSVTESIEAVRMSK 371
E V ++G +L + V + + + + I V E++E + +
Sbjct: 306 DYEN---VALLGSNLGIGKLNEVSVLN--RIADEMGMDTISLGVSIAHVMEAVERGILKE 360
Query: 372 QAGWGVMAS-----HRSGETEDTFIADLSVGLATGQIKTGAP 408
+G + + G+ K G
Sbjct: 361 GPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTH 402
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9440A, enolase superfamily,
PSI-2; 1.80A {Aspergillus oryzae RIB40}
Length = 371
Score = 32.6 bits (75), Expect = 0.21
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
++E P W L + + I+ D+L + K + + + LK
Sbjct: 215 HGLDFALEAPCA--TWRECISLRRKTD--IPIIYDELATN-EMSIVKILADDAAEGIDLK 269
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASH 381
+++ G +T + AG+ V
Sbjct: 270 ISKAGGLTRGRRQRDICLAAGYSVSVQE 297
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 32.2 bits (74), Expect = 0.29
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 17/82 (20%)
Query: 20 PTVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78
+ V++ T+DG + A P G+ + + ++
Sbjct: 30 DNLIVEIRTADGLLGLGAASPERH----------------VTGETLEACHAALDHDRLGW 73
Query: 79 LAGKDPTEQTAIDNYMVQQLDG 100
L G+D + + ++L
Sbjct: 74 LMGRDIRTLPRLCRELAERLPA 95
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ I IE PF + L + + +I D+ L+ A C +K
Sbjct: 209 ELGIEFIEQPFPAGRTDWLRALPKAI--RRRIAADESLLGPADAFALAAPPAACGIFNIK 266
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+ + G + + +++ AG +M
Sbjct: 267 LMKCGGLAPARRIATIAETAGIDLM 291
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 32.3 bits (74), Expect = 0.29
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
+ +E P W L + + ++ D+L+ T + AI++ C+ + LK
Sbjct: 219 PGLDIVLEAPCA--SWAETKSLRARCA--LPLLLDELIQT-ETDLIAAIRDDLCDGVGLK 273
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGA 407
V++ G +T + ++ AG + + ++ +F A L + +T +
Sbjct: 274 VSKQGGITPMLRQRAIAAAAGMVMSV-QDTVGSQISFAAILHLAQSTPRHLLRC 326
Score = 30.7 bits (70), Expect = 1.1
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 31/115 (26%)
Query: 1 MAITITAVKARQI--------FDSRGNPTVE------VDVTTSDGHVARA-AVPSGASTG 45
M++ IT + + + G V + T G + P G++
Sbjct: 1 MSLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYI 60
Query: 46 IYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
A ++ PA+ G DP + I + M L G
Sbjct: 61 AAHA----------------GGTRAALELLAPAILGMDPRQHDRIWDRMRDTLKG 99
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target
9375A, divergent enolase, lyase, PSI-2; 1.60A
{Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A
3es7_A 3fyy_A 3hpf_A*
Length = 391
Score = 31.5 bits (72), Expect = 0.48
Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 40/155 (25%)
Query: 5 ITAVKARQIFDSRGNPTVE----VDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
IT ++ + R V V + T +G GI E
Sbjct: 3 ITDLELHAVGIPRHTGFVNKHVIVKIHTDEGLT-----------GIGEM------SDFSH 45
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
S + ++ + L G++P + I+ + T+ + + G+ +
Sbjct: 46 LPLYSVDLHDLKQGLLSILLGQNPFDLMKINKELTDNFPETMYYY-----EKGSFIRNGI 100
Query: 121 SLA----VCKA----------GAHVKKIPLYKHIA 141
A K G +KI + I
Sbjct: 101 DNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIF 135
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase,
structural genomics, PSI, protein structu initiative,
nysgrc; 2.00A {Roseovarius nubinhibens}
Length = 379
Score = 31.5 bits (72), Expect = 0.52
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
D + +E P +E ++ + D+ + ++ + ++ LK
Sbjct: 214 DLDYI-LEQPCR--SYEECQQVRRVAD--QPMKLDECVTG-LHMAQRIVADRGAEICCLK 267
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLAT 400
++ +G ++++ V+A S E A +T
Sbjct: 268 ISNLGGLSKARRTRDFLIDNRMPVVA-EDSWGGEIASAAVAHFAAST 313
Score = 30.7 bits (70), Expect = 0.93
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 29/114 (25%)
Query: 1 MAITITAVKARQI--------FDSRGNPTVE------VDVTTSDGHVARAAVPSGASTGI 46
M++ IT ++ + + + V + T G G
Sbjct: 1 MSLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQ-----------GC 49
Query: 47 YEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
E + S+ V + P L G+DP + ++ M + G
Sbjct: 50 GEF----TPCGENYMIAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQG 99
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.48A {Mesorhizobium loti}
Length = 389
Score = 31.1 bits (71), Expect = 0.63
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 28/98 (28%)
Query: 1 MAITITAVKA--------RQIFDSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYE 48
M+++++ + R I DS+ +++ + G G+
Sbjct: 1 MSLSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGE-----------VGLGF 49
Query: 49 ALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTE 86
L + + S + P+L G
Sbjct: 50 IQTLFNP-----LPDQQEIESVFEHEVWPSLKGNRAIA 82
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 31.3 bits (72), Expect = 0.65
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
H VA GA + EA++LRD G
Sbjct: 39 NHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIG 72
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET:
KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2
c.1.6.1 PDB: 1vfh_A* 1vft_A*
Length = 386
Score = 30.9 bits (71), Expect = 0.73
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
GH ARAA +GA+ EALELR G
Sbjct: 43 GHGAVPCARAAQEAGAAWLGTATPEEALELRAAG 76
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006,
struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga
maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Length = 345
Score = 30.7 bits (70), Expect = 0.85
Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 295 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 354
I E P ++D E + + D+ T V + +KE+ + + +K+
Sbjct: 210 IDIAVYEQPVRREDIEGLKFVRFHS--PFPVAADESART-KFDVMRLVKEEAVDYVNIKL 266
Query: 355 NQIGSVTESIEAVRMSKQAGWGVM 378
+ +++++ V +++ +G +M
Sbjct: 267 MK-SGISDALAIVEIAESSGLKLM 289
Score = 27.6 bits (62), Expect = 9.5
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 18/76 (23%)
Query: 20 PTVEVDVTTSDGHVARA-AVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPA 78
VEV++ G A PS G E +E A+ + +
Sbjct: 31 RNVEVEIVLESGVKGYGEASPSFRVNG--ERVE---------------ALLAIENAVREM 73
Query: 79 LAGKDPTEQTAIDNYM 94
+ G D I
Sbjct: 74 ITGIDVRNYARIFEIT 89
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph;
HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB:
3e6e_A*
Length = 371
Score = 30.5 bits (70), Expect = 1.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
GH A+AA GA+ + EA+ELR+ G
Sbjct: 45 GHGAVESAKAAKKGGATGFCVALLDEAIELREAG 78
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for
C-terminal domain, INT aldimine form, isomerase; HET:
PLP; 1.90A {Mycobacterium tuberculosis}
Length = 384
Score = 30.5 bits (70), Expect = 1.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
GH VA+ A+ +GA+ + EAL LR G
Sbjct: 47 GHGATRVAQTALGAGAAELGVATVDEALALRADG 80
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP;
2.15A {Staphylococcus aureus} PDB: 3oo2_A
Length = 382
Score = 29.8 bits (68), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
G VAR + +GA+ + EA+ELR G
Sbjct: 44 GLGSVKVARHLMENGATFFAVATLDEAIELRMHG 77
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
enzyme subgroup, alpha/beta barrel, structural genomics,
isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1
Length = 324
Score = 29.5 bits (67), Expect = 2.1
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 294 DYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLK 353
D + +E P D + I D+ ++ + +K
Sbjct: 198 DLGVAMLEQPLPAQDDAALENFIH----PLPICADES-CHTRSNLKALKG--RYEMVNIK 250
Query: 354 VNQIGSVTESIEAVRMSKQAGWGVM 378
+++ G +TE++ ++ G+ +M
Sbjct: 251 LDKTGGLTEALALATEARAQGFSLM 275
>3nft_A Translocator protein BIPD; virulence, translocation, transport
protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A
2j9t_A* 2izp_A
Length = 303
Score = 29.5 bits (65), Expect = 2.2
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 273 NDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLV 332
+D + KI G +K L + I P + + D W E+G+ V I ++
Sbjct: 169 DDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARW------RKELGDAVSISDSGVVT 222
Query: 333 TNPKRVEKAIK 343
NP ++ K
Sbjct: 223 INPDKLIKMRD 233
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI, protein structu initiative, nysgrc; 2.30A
{Roseovarius nubinhibens} PDB: 3fvd_B
Length = 378
Score = 29.2 bits (66), Expect = 2.6
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 29/114 (25%)
Query: 1 MAITITAVKARQIF--------DSRGNPTVE------VDVTTSDGHVARAAVPSGASTGI 46
M++ IT + + S G + + + T +G G
Sbjct: 1 MSLRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVT-----------GW 49
Query: 47 YEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
E G YL + A + P L G DP ++ M QL G
Sbjct: 50 GEG---CPWGHSYLPAHGP-GLRAGIATLAPHLLGLDPRSLDHVNRVMDLQLPG 99
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP,
TIM barrel, structural genomics, NEW YORK SGX center
for structural genomics; HET: PLP; 1.70A {Oenococcus
oeni}
Length = 380
Score = 29.0 bits (66), Expect = 2.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
GH V++ A G + + E + +R G
Sbjct: 45 GHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAG 78
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural
genomics, enolase, epimerase, PSI-2, protein STRU
initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Length = 365
Score = 29.1 bits (66), Expect = 3.0
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 30/113 (26%)
Query: 1 MAITITAVKARQI-------FD-SRG----NPTVEVDVTTSDGHVARA-AVPSGASTGIY 47
+ TI A+ A I F + G V V V +DG + A P A
Sbjct: 3 LPTTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPA----- 57
Query: 48 EALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDG 100
G+ + + + + L G D + +
Sbjct: 58 -----------VSGETQTGTSAAIERLQ-SHLLGADVRGWRKLAAMLDHAEHE 98
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 3.5
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 24/109 (22%)
Query: 300 IE-DPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIG 358
IE + F+ + E + + E+ DL + E A + K + + + +I
Sbjct: 907 IEPELFNGYNPEKKEMIQEVIVEE------DLEPFEASK-ETAEQFKHQHGDKVDIFEIP 959
Query: 359 SVTESIEAVRMSKQAGWGVMASHRSGETEDTF-IADLSVGLATGQIKTG 406
E + G T +A GQI TG
Sbjct: 960 ETGEYSVKL--------------LKGATLYIPKALRFDRLVA-GQIPTG 993
>2rdc_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Length = 153
Score = 28.2 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 196 HHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGM 250
H I K+YG++ G EGG P + N++ IA A + G+++ G+
Sbjct: 100 HVFNRYIVKEYGEELKEAGIEGGIFPKPEANRD-------RIAIADWAGELLTGI 147
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.50A
{Oenococcus oeni psu-1}
Length = 395
Score = 28.6 bits (65), Expect = 3.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 31 GH----VARAAVPSGASTG-----IYEALELRDGG 56
G +A+A + ++ + EALELR
Sbjct: 45 GLGAIPLAKAFQETASADALIVSNLDEALELRQAD 79
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Geobacillus
stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
1ftx_A* 3uw6_A
Length = 388
Score = 28.6 bits (65), Expect = 4.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 31 GH----VARAAVPSGAS----TGIYEALELRDGG 56
GH VAR A+ +GAS + EAL LR+ G
Sbjct: 44 GHGDVQVARTALEAGASRLAVAFLDEALALREKG 77
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural
genomics, lyase; 1.70A {Actinobacillus succinogenes}
PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A*
1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 28.6 bits (64), Expect = 4.6
Identities = 29/242 (11%), Positives = 58/242 (23%), Gaps = 65/242 (26%)
Query: 1 MAITITAVKARQI---------FDSRGNPTVE---VDVTTSDGHVARAAVPSGASTGIYE 48
IT ++ + +P V + + G+ TG+ E
Sbjct: 24 STPIITEMQVIPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGN-----------TGVGE 72
Query: 49 ALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQL---DGTVNEW 105
G+ + + + + P + GK E + N + Q D
Sbjct: 73 V---------PGGEKIRQTLEDA----KPLVIGKTLGEYKNVMNTVRQTFNDHDAGGRGL 119
Query: 106 GWCKQKLGANAILAVSLA------------VCK---AGAHVKKIPLYKHIAELSGNKNLV 150
+ + + A+ A V G + + ++ + K
Sbjct: 120 QTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQRDAVEMLGYLFFIGDRKKTT 179
Query: 151 LPVPAFNVINGGSHAGNKLAMQ---------EFMILPVGASCFKEAMKMGVEVYHHLKAV 201
L + E G + FK +K GV
Sbjct: 180 LAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFK--LKGGVLDGFEEAEA 237
Query: 202 IK 203
+
Sbjct: 238 VT 239
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI,
protein structure initiat YORK structural genomics
research consortium; 1.80A {Salmonella typhimurium LT2}
PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Length = 415
Score = 28.1 bits (63), Expect = 5.9
Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 42/151 (27%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYL 60
M+ ++RQ F T+ V+V + TG +
Sbjct: 51 MSKYRDYEQSRQSFGINVLGTLIVEVEAENRQ-----------TGFAVS---------TA 90
Query: 61 GKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
G+ V + + GK ++ I + M+ T+ G L N I V
Sbjct: 91 GEMGCFIVEKH---LNRFIEGKCVSDIKLIHDQMLG---ATMYYSG--SGGLVMNTISCV 142
Query: 121 SLA----VCKA----------GAHVKKIPLY 137
LA K GA +I Y
Sbjct: 143 DLALWDLFGKVVGLPVYKLLGGAVRDEIQFY 173
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 28.2 bits (63), Expect = 6.4
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 260 SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEV 319
S+KT + + +L F + I SI ++++DW ++
Sbjct: 614 SEKTAAYWCQS-------------VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEAS 660
Query: 320 G 320
G
Sbjct: 661 G 661
>3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme;
enolase,metal-binding,PSI-II, NYSGXRC, structural
genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A
Length = 398
Score = 28.0 bits (63), Expect = 6.5
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 49/161 (30%)
Query: 2 AITITAVKA--------RQIFDSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEA 49
+TIT ++ R+ S + T+ V T G + G
Sbjct: 21 GLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGII-----------GEAYT 69
Query: 50 LELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCK 109
G + + + + P L G+D + + + + +
Sbjct: 70 -----GDEHETMFDIDRIIHEE---LAPTLIGQDAMAIERLWDSGYKVTFDILRDRR--- 118
Query: 110 QKLGANAILAVSLA----VCKA---------GAHVKKIPLY 137
LG A+ AV+ A V KA G + ++P+
Sbjct: 119 --LGLVALAAVNTAIWDAVGKALKMPLWKLWGGYRNELPMI 157
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin
resistance, center for STR genomics of infectious
diseases (csgid); HET: MSE; 2.02A {Enterococcus
faecalis}
Length = 374
Score = 27.8 bits (63), Expect = 8.4
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 10/35 (28%)
Query: 31 GH----VARAAVPSGAS-----TGIYEALELRDGG 56
GH V G S T I E + LR G
Sbjct: 43 GHGMYEVTTYLEQIGVSSFAVAT-IDEGIRLRKYG 76
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase,
magnesium binding site, lyase; HET: P4C; 1.80A
{Bradyrhizobium SP} PDB: 3tte_A*
Length = 383
Score = 27.6 bits (62), Expect = 9.2
Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 51/161 (31%)
Query: 2 AITITAVKA--------RQIFDSRGN----PTVEVDVTTSDGHVARAAVPSGASTGIYEA 49
IT V A R + ++ G P V +DVTT G G
Sbjct: 26 TAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVT-----------GH--- 71
Query: 50 LELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCK 109
+ K + ++ IG LAGK +++ +D GW
Sbjct: 72 -----SYLFAYTRLALKPLVHLVEDIGRELAGKALV-----PVDLMKAMDAKFRLLGW-- 119
Query: 110 QKLGANAILAVSLA----VCKA---------GAHVKKIPLY 137
Q L A+ + +A + + G + IP Y
Sbjct: 120 QGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAY 160
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 26.8 bits (60), Expect = 9.6
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 233 LNTAIAKAGYT--GKVVIGMDV 252
L+ GY GKVV GMDV
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDV 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,904,986
Number of extensions: 436406
Number of successful extensions: 1106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 117
Length of query: 445
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 348
Effective length of database: 3,993,456
Effective search space: 1389722688
Effective search space used: 1389722688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.7 bits)