RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043137
(445 letters)
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 386 bits (992), Expect = e-134
Identities = 137/293 (46%), Positives = 197/293 (67%), Gaps = 6/293 (2%)
Query: 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQD 209
VLP P N+INGGSH+ +A QEFMILPVGA FKEA++ G E++H LK ++K + +
Sbjct: 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLE- 62
Query: 210 ATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTG--KVVIGMDVAASEFYGSDKTYDLN 267
T VGDEGGFAP + ++G+E + AI AGY V +G D A+SEFY + +
Sbjct: 63 -TAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFY-DKERKVYD 120
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG 327
+ + +G+ + D + ++ YPI++IED D++DW+ + LT +G+KVQ+VG
Sbjct: 121 YTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVG 180
Query: 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387
DD VTN + + I+E N++L+KVNQIG++TE+ EA+ M+K+AG+ + SHRSGETE
Sbjct: 181 DDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETE 240
Query: 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK-FR 439
D+ IAD++V GQIKTG+ R++R+AKYNQLLRIE++LG A Y G K F
Sbjct: 241 DSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFY 293
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 377 bits (970), Expect = e-131
Identities = 184/290 (63%), Positives = 219/290 (75%), Gaps = 3/290 (1%)
Query: 150 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQD 209
VLPVP NV+NGGSHAG LA+QEFMI P GA F EA+++G EVYH+LK++ KK+YG
Sbjct: 4 VLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGAS 63
Query: 210 ATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFK 269
A NVGDEGG APNIQ +E L+L+ AI AG+ GKV IG+D A+SEF+ D YDL+FK
Sbjct: 64 AGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFF-KDGKYDLDFK 122
Query: 270 EENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDD 329
N+D S+ ++G L DLY S + YPIVSIEDPF +DDWE ++ G QIV DD
Sbjct: 123 NPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGI--QIVADD 180
Query: 330 LLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT 389
L VTNPKR+ AI++K +ALLLKVNQIG+++ESI+A + S AGWGVM SHRSGETEDT
Sbjct: 181 LTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDT 240
Query: 390 FIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFR 439
FIADL VGL TGQIKTGAP RSERLAK NQLLRIEEELG AV+AG F
Sbjct: 241 FIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFH 290
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 372 bits (955), Expect = e-128
Identities = 215/294 (73%), Positives = 247/294 (84%), Gaps = 4/294 (1%)
Query: 148 NLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYG 207
+L+LPVPAFNVINGGSHAGNKLAMQEFMILPVGA F++AM++G EVYH LK VIK KYG
Sbjct: 2 DLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYG 61
Query: 208 QDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLN 267
+DATNVGDEGGFAPNI EN E LEL+ AI KAGYT K+VIGMDVAASEFY K YDL+
Sbjct: 62 KDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGK-YDLD 120
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVG 327
FK D S+ I+GD L LY+ F+ DYP+VSIEDPFDQDDW ++K T+ VG +QIVG
Sbjct: 121 FKSPT-DPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVG--IQIVG 177
Query: 328 DDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETE 387
DDL VTNPKR+E+A++EK CN LLLKVNQIGSVTE+I+A +++++ GWGVM SHRSGETE
Sbjct: 178 DDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETE 237
Query: 388 DTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKFRAP 441
DTFIADL VGL TGQIKTGAPCRSERLAKYNQL+RIEEELG EA +AG FR P
Sbjct: 238 DTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNP 291
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 370 bits (951), Expect = e-128
Identities = 167/292 (57%), Positives = 211/292 (72%), Gaps = 2/292 (0%)
Query: 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY 206
K L LPVP FNVINGG HAGN L QEFMI PV A+ F EA++MG EVYH L+ +IKKKY
Sbjct: 1 KELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKY 60
Query: 207 GQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDL 266
GQDA NVGDEGGFAP I++ E L +L AI +AG+ GK I MD AASE Y +K
Sbjct: 61 GQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETY-DEKKQQY 119
Query: 267 NFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326
N ++ + ++ + L++ Y + DYPIVSIEDP+DQDD+ +A +T + K QIV
Sbjct: 120 NLTFKSPEP-TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQIV 178
Query: 327 GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386
GDDL VTN +R++ AI++K CN+LLLK+NQIG+++E+I + ++ + GW VM SHRSGET
Sbjct: 179 GDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGET 238
Query: 387 EDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438
EDT+IADL V L +GQIKTGAPCR ER AK NQLLRIEEELGA A + +
Sbjct: 239 EDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 290
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 357 bits (917), Expect = e-123
Identities = 136/292 (46%), Positives = 189/292 (64%), Gaps = 6/292 (2%)
Query: 147 KNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKY 206
+PVP N+INGG HA N + +QEFMI PVGA KEA++MG EV+HHL V+K K
Sbjct: 2 GKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG 61
Query: 207 GQDATNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDL 266
T VGDEGG+APN+ N E L ++ A+ AGY +G D+ + + + Y
Sbjct: 62 MN--TAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYE----LGKDITLAMDCAASEFYKD 115
Query: 267 NFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIV 326
+G++ + + + YPIVSIED D+ DW+ +A T +G+K+Q+V
Sbjct: 116 GKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLV 175
Query: 327 GDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGET 386
GDDL VTN K +++ I++ N++L+K NQIGS+TE++ A++M+K AG+ + SHRSGET
Sbjct: 176 GDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGET 235
Query: 387 EDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAKF 438
ED IADL+VG A GQIKTG+ RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct: 236 EDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKE 287
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 199 bits (507), Expect = 6e-62
Identities = 48/288 (16%), Positives = 92/288 (31%), Gaps = 54/288 (18%)
Query: 151 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQDA 210
+P F G ++ + MIL G A+ ++++
Sbjct: 5 EAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE----------- 41
Query: 211 TNVGDEGGFAPNIQENKEGLELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKE 270
+G +G +E + L+ I + + + + G D
Sbjct: 42 EKLGFKGEK------LREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPV--- 92
Query: 271 ENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFD----QDDWEHYAKLTSEV---GEKV 323
+ + + L K P+ IE P D D +T E+ G V
Sbjct: 93 ------RCA--EYIASLEKEAQ-GLPL-YIEGPVDAGNKPDQIRMLTAITKELTRLGSGV 142
Query: 324 QIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRS 383
+IV D+ T + + +C+ + +K +G + ++AV + G
Sbjct: 143 KIVADEWCNT-YQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTC 201
Query: 384 GETEDTFIADLSVGLAT--GQI--KTGAPCRSERLAKYNQLLRIEEEL 427
ETE + + V LA ++ K G +N++ R L
Sbjct: 202 NETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALL 249
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 179 bits (456), Expect = 2e-54
Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 34/270 (12%)
Query: 173 EFMILPVGASCFKEAMKMGVEVYHHLKAVIKKKYGQ--DATNVGDEGGFAPNIQENKEGL 230
E +PV A G + Y ++ +I K+ A E ++ E +
Sbjct: 3 EINAVPVFAQS-------GDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYV 55
Query: 231 ELLNTAIAKAGYTGKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKS 290
+ L I K + G+ D+ D ++ L +
Sbjct: 56 KWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIK---------AMA--DYIQTLAE- 103
Query: 291 FISDYPIVSIEDPFDQDDWEHYAKLTSEV-------GEKVQIVGDDLLVTNPKRVEKAIK 343
+ + IE P D +D + + ++ G ++V D+ + V+
Sbjct: 104 AAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW-CNTVEDVKFFTD 161
Query: 344 EKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDT--FIADLSVGLATG 401
K + + +K +G V +A+ K G G ET + ++ +
Sbjct: 162 NKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGAR 221
Query: 402 QI--KTGAPCRSERLAKYNQLLRIEEELGA 429
Q+ K G + N++ R+ +G
Sbjct: 222 QVLAKPGMGVDEGMMIVKNEMNRVLALVGR 251
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 139
Score = 163 bits (415), Expect = 7e-50
Identities = 90/146 (61%), Positives = 109/146 (74%), Gaps = 10/146 (6%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGK 62
+I + AR+I DSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRDG YLGK
Sbjct: 1 SIEKIWAREILDSRGNPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDGDKQRYLGK 59
Query: 63 GVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAV 120
GV KAV ++N+ I PAL +G EQ +DN M++ LDGT N K K GANAIL V
Sbjct: 60 GVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLE-LDGTEN-----KSKFGANAILGV 113
Query: 121 SLAVCKAGAHVKKIPLYKHIAELSGN 146
SLAVCKAGA +++PLY+HIA+L+GN
Sbjct: 114 SLAVCKAGAAERELPLYRHIAQLAGN 139
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 141
Score = 162 bits (410), Expect = 4e-49
Identities = 81/146 (55%), Positives = 105/146 (71%), Gaps = 10/146 (6%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKG 63
++ V AR ++DSRGNPTVEV++TT G V R+ VPSGASTG++EALE+RDG S ++GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 64 VSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V AV NVN +I PA A D +Q A+D++++ LDGT N K KLGANAIL VS
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLIS-LDGTAN-----KSKLGANAILGVS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELSGNK 147
LA +A A K +PLYKH+A+LS +K
Sbjct: 115 LAASRAAAAEKNVPLYKHLADLSKSK 140
Score = 29.5 bits (66), Expect = 0.42
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 162 GSHAGNKLAMQEFMILPVGASCFKEAMKMGVEVYHHLKAVIKKK 205
G+ +KL + + + AS A K V +Y HL + K K
Sbjct: 98 GTANKSKLGANAILGVSLAASRAAAAEK-NVPLYKHLADLSKSK 140
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 139
Score = 160 bits (406), Expect = 2e-48
Identities = 81/144 (56%), Positives = 103/144 (71%), Gaps = 8/144 (5%)
Query: 3 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLG 61
+TI V R++ DSRGNPTVEV+VTT G V R+AVPSGASTG+YEA ELRDG Y+G
Sbjct: 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVG 60
Query: 62 KGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
KG +AV NVN +IGPAL G+D +Q +D ++ +LDGT N K KLGANAIL S
Sbjct: 61 KGCLQAVKNVNEVIGPALIGRDELKQEELDT-LMLRLDGTPN-----KGKLGANAILGCS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELSG 145
+A+ KA A K +PLY+++A L+G
Sbjct: 115 MAISKAAAAAKGVPLYRYLASLAG 138
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
Length = 139
Score = 158 bits (402), Expect = 6e-48
Identities = 83/142 (58%), Positives = 94/142 (66%), Gaps = 7/142 (4%)
Query: 5 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKG 63
I + R+I DSRGNPTVE +V G V AA PSGASTG EALELRDG +LGKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 64 VSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLA 123
V+KAV+ VN I AL GKD +Q ID M+ LDGT N K K GANAILAVSLA
Sbjct: 63 VTKAVAAVNGPIAQALIGKDAKDQAGIDKIMI-DLDGTEN-----KSKFGANAILAVSLA 116
Query: 124 VCKAGAHVKKIPLYKHIAELSG 145
KA A K +PLY+HIAEL+G
Sbjct: 117 NAKAAAAAKGMPLYEHIAELNG 138
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 137
Score = 158 bits (401), Expect = 8e-48
Identities = 76/141 (53%), Positives = 91/141 (64%), Gaps = 8/141 (5%)
Query: 1 MAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGS-DY 59
M+I IT V AR++ DSRGNPT+EV+V T G R VPSGASTG +EA+ELRDG Y
Sbjct: 1 MSI-ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRY 59
Query: 60 LGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILA 119
G G KAV NVN II A+ G D +Q AID + LDGT K KLGANAIL
Sbjct: 60 GGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDR-AMIALDGT-----PNKGKLGANAILG 113
Query: 120 VSLAVCKAGAHVKKIPLYKHI 140
VS+AV +A A +IPLY ++
Sbjct: 114 VSIAVARAAADYLEIPLYSYL 134
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus
vulgaris) [TaxId: 6707]}
Length = 139
Score = 150 bits (380), Expect = 9e-45
Identities = 82/143 (57%), Positives = 96/143 (67%), Gaps = 8/143 (5%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGK 62
+IT V AR IFDSRGNPTVEVD+ TS G + RAAVPSGASTG++EALE+RDG S Y GK
Sbjct: 1 SITKVFARTIFDSRGNPTVEVDLYTSKG-LFRAAVPSGASTGVHEALEMRDGDKSKYHGK 59
Query: 63 GVSKAVSNVNAIIGPALAGKD-PTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVS 121
V AV NVN +I P + Q + + +LDGT N K LGANAIL VS
Sbjct: 60 SVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTEN-----KSSLGANAILGVS 114
Query: 122 LAVCKAGAHVKKIPLYKHIAELS 144
LA+CKAGA IPLY+HIA L+
Sbjct: 115 LAICKAGAAELGIPLYRHIANLA 137
>d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris
pv. campestris [TaxId: 340]}
Length = 139
Score = 35.1 bits (80), Expect = 0.005
Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 21/150 (14%)
Query: 4 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAV-PSGASTGIYEALELRDGGSDYLGK 62
TI A++ +V TS A+ P + Y L DG D G
Sbjct: 2 TIIALETH-----------DVRFPTSRELDGSDAMNPDPDYSAAYVVLRT-DGAEDLAGY 49
Query: 63 GVSKAVSNVNAIIGPA-------LAGKDPTEQTAIDNYMVQQLDG-TVNEWGWCKQKLGA 114
G+ + N + A + G + A ++L + W ++ +
Sbjct: 50 GLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMH 109
Query: 115 NAILAVSLAVCKAGAHVKKIPLYKHIAELS 144
AI AV A A PL++ IAEL+
Sbjct: 110 MAIGAVINAAWDLAARAANKPLWRFIAELT 139
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 29.1 bits (65), Expect = 0.95
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 270 EENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWE 310
+D + KI G +K L + I P + + D W
Sbjct: 139 SAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWR 179
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 26.5 bits (57), Expect = 6.4
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 268 FKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEH 311
F GS K S LK + + P ++ F + +
Sbjct: 128 FLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDT 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,617,316
Number of extensions: 75379
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 22
Length of query: 445
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,199,356
Effective search space: 428170092
Effective search space used: 428170092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)