BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043141
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 47/59 (79%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
++ ++DTY++SG GGQH+NK ESA+RI H+PTG++ Q DRSQHKNR +A+ L++ L
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
R+ +DTY+SSG GGQH+NK ESA+RI H+ TGV+ Q DRSQHKNR +A+ L++ L
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
++ +DTY++SG GGQH+NK ESA+RI H+PTG++ Q DRSQHKN+ SA L++ L
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAFKMLKSRL 294
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
++ +DTY++SG GGQH+NK +SA+RI H+PTG++ Q DRSQHKNR +A+ L++ L
Sbjct: 236 KDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY+SSG GGQH+NK +SA+RI H+PTGV+ + ++RSQHKNR A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY+SSG GGQH+NK +SA+RI H+PTGV+ + ++RSQHKNR A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY+SSG GGQH+NK +SA+RI H+PTGV+ + ++RSQHKNR A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY+SSG GGQH+NK +SA+RI H+PTGV+ + ++RSQHKNR A+S L+T L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRL 280
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 46/59 (77%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
R+ ++D Y++SG GGQH+NK ESAVRI+H+PTG++ Q DRSQHKN+ A+ +L+ L
Sbjct: 238 RDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVVQCQNDRSQHKNKDQAMKQLKAKL 296
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
Query: 24 TDDELFRECE-----MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRV 78
DD++ E E +D Y++SG GGQH+NK ESAVRI H+PTG++ Q DRSQHKN+
Sbjct: 225 VDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKA 284
Query: 79 SALSRLRTLL 88
+A+ L++ L
Sbjct: 285 TAMKMLKSRL 294
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
++ +DTY++SG GGQH+NK ESA+RI H+PTG++ Q DRSQHKN+ +A L++ L
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 25 DDELFRECE-----MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVS 79
DD++ E E +DTY++SG GGQH+NK ESA+RI H PTG++ Q DRSQHKN+ +
Sbjct: 226 DDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVVQCQNDRSQHKNKAT 285
Query: 80 ALSRLRTLL 88
A+ L++ L
Sbjct: 286 AMKMLKSKL 294
>sp|B2U8V1|RF2_RALPJ Peptide chain release factor 2 OS=Ralstonia pickettii (strain 12J)
GN=prfB PE=3 SV=1
Length = 367
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQHINK +SAVRI H+PTG++ Q DRSQH+NR A++ L++ L
Sbjct: 243 VDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRL 297
>sp|Q63SP0|RF2_BURPS Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
K96243) GN=prfB PE=3 SV=1
Length = 367
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQHINK +SAVRI H+PTG++ Q DRSQH+NR A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|A3NX26|RF2_BURP0 Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
1106a) GN=prfB PE=3 SV=3
Length = 367
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQHINK +SAVRI H+PTG++ Q DRSQH+NR A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q62J00|RF2_BURMA Peptide chain release factor 2 OS=Burkholderia mallei (strain ATCC
23344) GN=prfB PE=3 SV=1
Length = 367
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQHINK +SAVRI H+PTG++ Q DRSQH+NR A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=prfB PE=3 SV=1
Length = 367
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQHINK +SAVRI H+PTG++ Q DRSQH+NR A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=prfB PE=3 SV=1
Length = 363
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y+SSG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRSSGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|A6SUF6|RF1_JANMA Peptide chain release factor 1 OS=Janthinobacterium sp. (strain
Marseille) GN=prfA PE=3 SV=1
Length = 360
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRL 84
+ +DTY++SG GGQHINK +SAVRI H+PTG++ + +DRSQHKN+ SAL L
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVL 274
>sp|Q5NZU2|RF2_AROAE Peptide chain release factor 2 OS=Aromatoleum aromaticum (strain
EbN1) GN=prfB PE=3 SV=1
Length = 367
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQHINK +SAVRI H PTGV+ Q DRSQHKN+ A+S L+ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHEPTGVVVQCQNDRSQHKNKAEAMSMLKARL 297
>sp|Q9ZMR1|RF2_HELPJ Peptide chain release factor 2 OS=Helicobacter pylori (strain J99)
GN=prfB PE=3 SV=1
Length = 363
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRL 84
E +DTY+SSG GGQH+NK +SA+RI H+PTG++ + E+RSQHKNR A++ L
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWL 276
>sp|B6JPR7|RF2_HELP2 Peptide chain release factor 2 OS=Helicobacter pylori (strain P12)
GN=prfB PE=3 SV=1
Length = 363
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|B5Z9U4|RF2_HELPG Peptide chain release factor 2 OS=Helicobacter pylori (strain G27)
GN=prfB PE=3 SV=1
Length = 363
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|B2US00|RF2_HELPS Peptide chain release factor 2 OS=Helicobacter pylori (strain
Shi470) GN=prfB PE=3 SV=1
Length = 363
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q1CUY8|RF2_HELPH Peptide chain release factor 2 OS=Helicobacter pylori (strain
HPAG1) GN=prfB PE=3 SV=1
Length = 363
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q17YT5|RF2_HELAH Peptide chain release factor 2 OS=Helicobacter acinonychis (strain
Sheeba) GN=prfB PE=3 SV=1
Length = 363
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 35 DTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ SAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q2W3F8|RF2_MAGSA Peptide chain release factor 2 OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=prfB PE=3 SV=1
Length = 371
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
EC +DTY++SG GGQHINK +SAVRI H+PTG+ +RSQH+NR A LR L
Sbjct: 236 ECRIDTYRASGAGGQHINKTDSAVRITHIPTGIAVACQMERSQHQNRARAWDMLRARL 293
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 30 RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
++ +DTY++SG GGQH+NK ESA+RI H PTG++ Q DRSQHKN+ +A+ L++ L
Sbjct: 236 KDLRIDTYRASGAGGQHVNKTESAIRITHEPTGIVVQCQNDRSQHKNKSAAMKMLKSRL 294
>sp|C1DEV0|RF1_AZOVD Peptide chain release factor 1 OS=Azotobacter vinelandii (strain DJ
/ ATCC BAA-1303) GN=prfA PE=3 SV=1
Length = 360
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRL 84
E +DTY+SSG GGQH+NK +SA+RI H+PTG++ + E+RSQHKNR A++ L
Sbjct: 223 ELRVDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWL 276
>sp|A4IWC1|RF1_FRATW Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q0BKE8|RF1_FRATO Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q2A1Q0|RF1_FRATH Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|A7NE96|RF1_FRATF Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|B2SFF6|RF1_FRATM Peptide chain release factor 1 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q5NIA8|RF1_FRATT Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q14JR1|RF1_FRAT1 Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|B3PJP4|RF1_CELJU Peptide chain release factor 1 OS=Cellvibrio japonicus (strain
Ueda107) GN=prfA PE=3 SV=1
Length = 360
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DTY++SG GGQH+NK +SA+RI H+PTG++ + ++RSQHKNR A+S L T L
Sbjct: 226 IDTYRASGAGGQHVNKTDSAIRITHIPTGIVVECQDERSQHKNRARAMSLLATKL 280
>sp|B0TX37|RF1_FRAP2 Peptide chain release factor 1 OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=prfA PE=3 SV=1
Length = 361
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 47/58 (81%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + + RSQHKNR +A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=prfA PE=3 SV=1
Length = 373
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRL 84
+ +DTY++SG GGQHINK +SAVRI H+PTG++A+ +DRSQH+N+ AL L
Sbjct: 231 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVL 284
>sp|A1U367|RF1_MARAV Peptide chain release factor 1 OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=prfA PE=3 SV=1
Length = 363
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+DT++SSG GGQH+NK +SA+RI H+PTG++ + E+RSQHKNR ALS L + L
Sbjct: 226 VDTFRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKALSLLASRL 280
>sp|A1W163|RF2_CAMJJ Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=prfB PE=3
SV=1
Length = 365
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ +A L++ L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|Q47Y94|RF1_COLP3 Peptide chain release factor 1 OS=Colwellia psychrerythraea (strain
34H / ATCC BAA-681) GN=prfA PE=3 SV=1
Length = 362
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 45/58 (77%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ ++DT+++SG GGQH+NK +SA+RI H+PTGV+ + E RSQHKNR A+S L+ L
Sbjct: 223 DLKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQEQRSQHKNRAQAMSVLQARL 280
>sp|Q5HSX6|RF2_CAMJR Peptide chain release factor 2 OS=Campylobacter jejuni (strain
RM1221) GN=prfB PE=3 SV=1
Length = 365
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ +A L++ L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|Q6F9S2|RF1_ACIAD Peptide chain release factor 1 OS=Acinetobacter sp. (strain ADP1)
GN=prfA PE=3 SV=2
Length = 362
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRL 84
+DTY++SG GGQHINK +SAVRI HVPTGV+ + E+RSQHKN+ A++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMALL 274
>sp|Q9PMK5|RF2_CAMJE Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=prfB PE=3
SV=1
Length = 365
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ +A L++ L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|B1KFR6|RF2_SHEWM Peptide chain release factor 2 OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=prfB PE=3 SV=1
Length = 365
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+ +DTY++SG GGQH+NK ESA+RI HVPT + Q DRSQHKNR +A+ +L+ L
Sbjct: 238 DLRIDTYRASGAGGQHVNKTESAIRITHVPTNTVVQCQNDRSQHKNRDAAMKQLKAKL 295
>sp|A7H5G4|RF2_CAMJD Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=prfB
PE=3 SV=1
Length = 365
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ +A L++ L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|A8FNC2|RF2_CAMJ8 Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=prfB
PE=3 SV=1
Length = 365
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 34 MDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
+D Y++SG GGQH+NK ESAVRI H PTG++ Q DRSQHKN+ +A L++ L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|Q88PW5|RF1_PSEPK Peptide chain release factor 1 OS=Pseudomonas putida (strain
KT2440) GN=prfA PE=3 SV=1
Length = 360
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 31 ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLLAL 90
+ +DTY++SG GGQH+NK +SA+RI H+PTG++ + E+RSQHKNR A+S L L
Sbjct: 223 DLRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLN- 281
Query: 91 NVRSSVKLDAYSPPPQLL 108
++++S +A + +LL
Sbjct: 282 DMQTSAAQNALASERKLL 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,636,001
Number of Sequences: 539616
Number of extensions: 1626905
Number of successful extensions: 4689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3685
Number of HSP's gapped (non-prelim): 973
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)