Query 043141
Match_columns 135
No_of_seqs 119 out of 1081
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbt_A RF-1, peptide chain rel 100.0 4.4E-35 1.5E-39 249.9 6.8 116 3-131 210-325 (371)
2 1rq0_A RF-1, peptide chain rel 100.0 6.3E-35 2.2E-39 246.7 6.8 115 3-130 173-287 (342)
3 2b3t_B RF-1, peptide chain rel 100.0 6.4E-35 2.2E-39 248.1 6.1 115 3-130 196-311 (360)
4 3d5a_X RF1, peptide chain rele 100.0 4.2E-35 1.5E-39 248.7 2.3 115 3-130 192-306 (354)
5 2rsm_A Probable peptide chain 100.0 1.2E-31 4.1E-36 197.2 10.1 87 5-95 24-111 (115)
6 1gqe_A Release factor 2, RF2; 100.0 4.5E-32 1.5E-36 231.0 8.3 112 3-130 213-327 (365)
7 2ihr_1 Peptide chain release f 100.0 1E-31 3.5E-36 228.8 8.2 112 3-130 201-315 (365)
8 2jva_A Peptidyl-tRNA hydrolase 100.0 1.5E-28 5.3E-33 178.8 9.3 75 17-95 4-102 (108)
9 1j26_A Immature colon carcinom 100.0 3.9E-28 1.3E-32 177.7 9.9 74 17-94 11-109 (112)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 2.9E-27 9.8E-32 178.7 7.6 84 17-104 4-111 (140)
11 2cte_A Vigilin; K homology typ 71.2 2.3 7.9E-05 28.6 2.3 50 41-95 33-89 (94)
12 2ctl_A Vigilin; K homology typ 61.9 4.5 0.00015 27.4 2.3 48 41-93 33-90 (97)
13 1vig_A Vigilin; RNA-binding pr 60.6 3.8 0.00013 26.1 1.6 42 41-87 21-69 (71)
14 2ctm_A Vigilin; K homology typ 55.9 9.8 0.00034 25.6 3.1 49 41-94 33-89 (95)
15 2ctf_A Vigilin; K homology typ 52.8 12 0.00042 25.5 3.3 49 41-94 43-96 (102)
16 1we8_A Tudor and KH domain con 51.4 8.1 0.00028 26.2 2.1 45 41-90 31-86 (104)
17 2ctj_A Vigilin; K homology typ 50.4 7.6 0.00026 26.3 1.9 46 40-90 32-85 (95)
18 2ctk_A Vigilin; K homology typ 48.0 15 0.0005 25.1 3.0 48 41-93 33-87 (104)
19 2axy_A Poly(RC)-binding protei 47.9 7.6 0.00026 24.6 1.5 44 41-89 21-71 (73)
20 2p2r_A Poly(RC)-binding protei 44.0 7.9 0.00027 24.5 1.1 44 41-89 21-73 (76)
21 2hh3_A KH-type splicing regula 41.2 19 0.00065 24.7 2.8 46 41-91 27-81 (106)
22 2yqr_A KIAA0907 protein; struc 41.1 18 0.00061 25.7 2.7 47 40-90 34-99 (119)
23 2lfh_A DNA-binding protein inh 39.1 11 0.00037 24.8 1.2 23 66-88 18-40 (68)
24 1k1g_A SF1-BO isoform; splicin 37.6 15 0.00051 26.4 1.8 26 61-90 73-99 (131)
25 1dtj_A RNA-binding neurooncolo 35.7 15 0.00053 22.9 1.5 43 41-88 19-73 (76)
26 2jvz_A KH type-splicing, FAR u 33.9 21 0.00073 25.0 2.1 45 41-90 107-160 (164)
27 1j5k_A Heterogeneous nuclear r 32.5 21 0.00073 23.3 1.8 46 41-91 30-84 (89)
28 1zzk_A Heterogeneous nuclear r 32.2 26 0.00089 22.4 2.2 45 41-90 23-76 (82)
29 2ftc_B Mitochondrial ribosomal 31.9 34 0.0012 25.0 3.0 27 35-62 80-106 (136)
30 1x4n_A FAR upstream element bi 31.9 39 0.0013 22.1 3.1 45 41-90 31-84 (92)
31 2opv_A KHSRP protein; KH domai 30.5 20 0.00069 23.1 1.4 43 41-88 30-83 (85)
32 1wvn_A Poly(RC)-binding protei 30.0 12 0.00042 24.0 0.2 45 41-90 22-75 (82)
33 1ec6_A RNA-binding protein NOV 27.4 38 0.0013 21.8 2.3 48 41-91 19-76 (87)
34 1x4m_A FAR upstream element bi 26.0 37 0.0013 22.3 2.1 61 15-88 13-84 (94)
35 4aya_A DNA-binding protein inh 24.9 27 0.00091 24.4 1.2 23 66-88 29-51 (97)
36 3krm_A Insulin-like growth fac 21.8 30 0.001 24.4 1.0 48 41-91 101-157 (163)
37 2rrf_A Zinc finger FYVE domain 21.1 2.1E+02 0.0072 21.1 5.5 55 32-88 64-129 (141)
No 1
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=4.4e-35 Score=249.86 Aligned_cols=116 Identities=30% Similarity=0.408 Sum_probs=90.9
Q ss_pred cccCcceeccCCCCCcCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHHH
Q 043141 3 YHTNDNCSSSSSSSKKNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALS 82 (135)
Q Consensus 3 ~ht~~~~~~~~~~~~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~~ 82 (135)
+|||+++|.+.|......+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|++
T Consensus 210 ~hTS~asV~V~Pe~~ev~i~I~~~dl----~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~ 285 (371)
T 1zbt_A 210 VHTSTATVLVMPEVEEVEYEIDPKDL----RVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMK 285 (371)
T ss_dssp CEEEEEEEEEEECCCGGGSCCCGGGE----EEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHH
T ss_pred ccccceEEEEeccccccccccCcCcE----EEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHH
Confidence 79999999999877665677888888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccccCCCCCCccccccCCCCcccccCCCCCCCCCCCC
Q 043141 83 RLRTLLALNVRSSVKLDAYSPPPQLLQILPPKSTIRSSEVGPQIGPNNP 131 (135)
Q Consensus 83 rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~q~~~g~~~~kIr~~n~ 131 (135)
+|+++|..........+ ....+|+++++|+||++||+||=
T Consensus 286 ~L~~~L~~~~~~~~~~~---------~~~~r~~~ig~g~Rse~IRtYnf 325 (371)
T 1zbt_A 286 IIRARVADHFAQIAQDE---------QDAERKSTVGTGDRSERIRTYNF 325 (371)
T ss_dssp HHHHHHHHHHHHHHHHH---------TCC----CCSCSCTTSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHhhccccccCCCeeeEEC
Confidence 99999887766543332 23467899999999999999983
No 2
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=6.3e-35 Score=246.75 Aligned_cols=115 Identities=32% Similarity=0.474 Sum_probs=89.9
Q ss_pred cccCcceeccCCCCCcCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHHH
Q 043141 3 YHTNDNCSSSSSSSKKNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALS 82 (135)
Q Consensus 3 ~ht~~~~~~~~~~~~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~~ 82 (135)
+|||+++|.+.|......+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|++
T Consensus 173 ~hTS~asV~V~Pe~~~~~i~i~~~dl----~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~ 248 (342)
T 1rq0_A 173 IHTSTATVAVLPEIEEKDIEIRPEDL----KIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALR 248 (342)
T ss_dssp CEEEEEEEEEEECCCGGGSCCCGGGE----EEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHH
T ss_pred CcccceEEEEeccccccccccChhHe----EEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHH
Confidence 79999999999877665677888888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccccCCCCCCccccccCCCCcccccCCCCCCCCCCC
Q 043141 83 RLRTLLALNVRSSVKLDAYSPPPQLLQILPPKSTIRSSEVGPQIGPNN 130 (135)
Q Consensus 83 rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~q~~~g~~~~kIr~~n 130 (135)
+|+++|..........+ ....+++++++|+||++||+||
T Consensus 249 ~L~~~L~~~~~~~~~~~---------~~~~r~~~i~~g~Rse~IRtYn 287 (342)
T 1rq0_A 249 ILRARLYQLQKEQKERE---------ISQKRKSQIGTGERSEKIRTYN 287 (342)
T ss_dssp HHHHHHHHHHHHHHHTT---------TCC----------CCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHhhcccccccCCeEEEE
Confidence 99999987766653332 2246789999999999999998
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.4e-35 Score=248.10 Aligned_cols=115 Identities=29% Similarity=0.457 Sum_probs=92.9
Q ss_pred cccCcceeccCCCCCcCC-cccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHH
Q 043141 3 YHTNDNCSSSSSSSKKNY-LELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSAL 81 (135)
Q Consensus 3 ~ht~~~~~~~~~~~~~~~-~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~ 81 (135)
+|||+++|.+.|.....- +.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+
T Consensus 196 ~hTS~asV~V~Pe~~~~e~i~i~~~dl----~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~ 271 (360)
T 2b3t_B 196 IHTSACTVAVMPELPDAELPDVNPADL----RIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAL 271 (360)
T ss_dssp CEEEEEEEECCBCCCTTTCCCCCSSSE----EEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHH
T ss_pred CCccceEEEEecCcccccccccChhhe----EEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHH
Confidence 799999999998766544 66888887 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccCCCCCCccccccCCCCcccccCCCCCCCCCCC
Q 043141 82 SRLRTLLALNVRSSVKLDAYSPPPQLLQILPPKSTIRSSEVGPQIGPNN 130 (135)
Q Consensus 82 ~rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~q~~~g~~~~kIr~~n 130 (135)
++|+++|.....+....+ ....+|+++++|+||++||+||
T Consensus 272 ~~L~~~L~~~~~~~~~~~---------~~~~r~~~i~~g~rse~IRtYn 311 (360)
T 2b3t_B 272 SVLGARIHAAEMAKRQQA---------EASTRRNLLGSGDRSDRNRTYN 311 (360)
T ss_dssp HHHHHHHTTTTTTSCC---------------CCC-------CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccCCeeeEE
Confidence 999999988776654332 2346789999999999999998
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=4.2e-35 Score=248.74 Aligned_cols=115 Identities=32% Similarity=0.439 Sum_probs=102.1
Q ss_pred cccCcceeccCCCCCcCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHHH
Q 043141 3 YHTNDNCSSSSSSSKKNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALS 82 (135)
Q Consensus 3 ~ht~~~~~~~~~~~~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~~ 82 (135)
+|||+++|.+.|......+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|++
T Consensus 192 ~hTS~asV~V~P~~~~~~i~i~~~dl----~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~ 267 (354)
T 3d5a_X 192 IHTSTATVAVLPKAEEEDFALNMDEI----RIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALM 267 (354)
T ss_dssp CEEEEEEEEEEECCCCCCCCCCGGGE----EEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHH
T ss_pred CccCceEEEEeccCcccccccCccce----EEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHH
Confidence 79999999999877666677888888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcccccCCCCCCccccccCCCCcccccCCCCCCCCCCC
Q 043141 83 RLRTLLALNVRSSVKLDAYSPPPQLLQILPPKSTIRSSEVGPQIGPNN 130 (135)
Q Consensus 83 rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~q~~~g~~~~kIr~~n 130 (135)
+|+++|..........+ ....+|+++++|+||++||+||
T Consensus 268 ~L~~~L~~~~~~~~~~~---------~~~~r~~~i~~g~rse~IRtYn 306 (354)
T 3d5a_X 268 ILRSRLLEMKRAEEAER---------LRKTRLAQIGTGERSEKIRTYN 306 (354)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHSCGGGGSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHhhcccccccCCeeeEE
Confidence 99999887765543321 2245689999999999999998
No 5
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.97 E-value=1.2e-31 Score=197.20 Aligned_cols=87 Identities=30% Similarity=0.440 Sum_probs=79.4
Q ss_pred cCcceeccCCCCC-cCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHHHH
Q 043141 5 TNDNCSSSSSSSK-KNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSR 83 (135)
Q Consensus 5 t~~~~~~~~~~~~-~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~~r 83 (135)
||.|+|.+++... ...+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++
T Consensus 24 ts~~~v~v~p~~d~~~~l~I~~~dl----~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~ 99 (115)
T 2rsm_A 24 MAASTVQVAGRKDYPALLPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKV 99 (115)
T ss_dssp CCCCCCCCCSCCCCCCSCCCCGGGC----EEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHH
T ss_pred cceEEEEeccccCCCccCCcCHHHe----EEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHH
Confidence 7888888886554 34588999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcc
Q 043141 84 LRTLLALNVRSS 95 (135)
Q Consensus 84 L~~~l~~~~~~~ 95 (135)
|+++|.+.+...
T Consensus 100 L~~kL~e~~~~~ 111 (115)
T 2rsm_A 100 LQEKVDVFYNSG 111 (115)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhccc
Confidence 999999887653
No 6
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=99.97 E-value=4.5e-32 Score=230.99 Aligned_cols=112 Identities=33% Similarity=0.476 Sum_probs=94.7
Q ss_pred cccCcceeccCCCCC-cCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHH
Q 043141 3 YHTNDNCSSSSSSSK-KNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSAL 81 (135)
Q Consensus 3 ~ht~~~~~~~~~~~~-~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~ 81 (135)
+|||+++|.+.|... ...+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+
T Consensus 213 rhTS~asV~V~Pe~~~~v~i~i~~~dl----~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~ 288 (365)
T 1gqe_A 213 RHTSFSSAFVYPEVDDDIDIEINPADL----RIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAM 288 (365)
T ss_dssp EEEEEEEEEEEECCBTTBCCCCCGGGE----EEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHH
T ss_pred CCcceeEEEEecCCCcccccccCHHHc----eEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHH
Confidence 799999999998764 35677888888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccCCCCCCccccccCCCC--cccccCCCCCCCCCCC
Q 043141 82 SRLRTLLALNVRSSVKLDAYSPPPQLLQILPPK--STIRSSEVGPQIGPNN 130 (135)
Q Consensus 82 ~rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k--~q~~~g~~~~kIr~~n 130 (135)
++|+++|.....+....+ ..+.|+ .++++|+ +||+||
T Consensus 289 ~~L~~~L~~~~~~~~~~~---------~~~~r~~~~~i~~G~---~IRtY~ 327 (365)
T 1gqe_A 289 KQMKAKLYEVEMQKKNAE---------KQAMEDNKSDIGWGS---QIRSYV 327 (365)
T ss_dssp HHHHHHHHHHHHHHHHHH---------TTCCSTTCCCCCSCS---EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHhhhhcccCccC---CeEeEE
Confidence 999999887665544432 123444 5565554 899998
No 7
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.97 E-value=1e-31 Score=228.78 Aligned_cols=112 Identities=30% Similarity=0.343 Sum_probs=95.8
Q ss_pred cccCcceeccCCCCC-cCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEEcCCeeEEEeccccCHHHHHHHHH
Q 043141 3 YHTNDNCSSSSSSSK-KNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSAL 81 (135)
Q Consensus 3 ~ht~~~~~~~~~~~~-~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h~ptGi~v~~~e~RSq~~Nk~~A~ 81 (135)
+|||+++|.+.|... ...+.|+++|| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+
T Consensus 201 rhTS~asV~V~P~~~~~~~i~i~~~dl----~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~ 276 (365)
T 2ihr_1 201 RHTSFAGVEVIPEVDEEVEVVLKPEEL----RIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELAL 276 (365)
T ss_dssp EEEEEEEEEEEEECCSSSSCCCCGGGE----EEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHH
T ss_pred ccceeEEEEEecCCCcccccccCccce----EEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHH
Confidence 699999999998654 35677888888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccCCCCCCccccccCCC--CcccccCCCCCCCCCCC
Q 043141 82 SRLRTLLALNVRSSVKLDAYSPPPQLLQILPP--KSTIRSSEVGPQIGPNN 130 (135)
Q Consensus 82 ~rL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--k~q~~~g~~~~kIr~~n 130 (135)
++|+++|.....+....+ ....| +.++++|+ +||+||
T Consensus 277 ~~L~~~L~~~~~~~~~~~---------~~~~r~~~~~i~~G~---~IRtYn 315 (365)
T 2ihr_1 277 KILKARLYELERKKREEE---------LKALRGEVRPIEWGS---QIRSYV 315 (365)
T ss_dssp HHHHHHHHHHHHHHHHHH---------TTTTTCCSCCSCCCS---CSEEEE
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHhhhhccCccC---CeeeEE
Confidence 999999887655543332 22345 67777776 699998
No 8
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.95 E-value=1.5e-28 Score=178.80 Aligned_cols=75 Identities=33% Similarity=0.592 Sum_probs=69.4
Q ss_pred CcCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEEE------cC-----------------Ce-eEEEeccccC
Q 043141 17 KKNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKH------VP-----------------TG-VIAQAAEDRS 72 (135)
Q Consensus 17 ~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~h------~p-----------------tG-i~v~~~e~RS 72 (135)
.+..+.|+++|| +|+|+|||||||||||||+|+|+|+| +| +| |+|+|+++||
T Consensus 4 i~~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RS 79 (108)
T 2jva_A 4 ISNNVHLPDAEI----ELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRT 79 (108)
T ss_dssp CSSSCEECGGGE----EEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSS
T ss_pred cccccccChHHE----EEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCC
Confidence 345688999988 99999999999999999999999999 88 88 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcc
Q 043141 73 QHKNRVSALSRLRTLLALNVRSS 95 (135)
Q Consensus 73 q~~Nk~~A~~rL~~~l~~~~~~~ 95 (135)
|.+||++|+++|+++|..++..+
T Consensus 80 Q~~Nr~~Al~rL~~~l~~a~~~~ 102 (108)
T 2jva_A 80 QEQNRADALLRLSELIVNAAKLE 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999999999999887653
No 9
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.95 E-value=3.9e-28 Score=177.67 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=67.4
Q ss_pred CcCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEE-EcCCe------------------------eEEEecccc
Q 043141 17 KKNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIK-HVPTG------------------------VIAQAAEDR 71 (135)
Q Consensus 17 ~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~-h~ptG------------------------i~v~~~e~R 71 (135)
..-.+.|+++|| +|+|+|||||||||||||+|+|+|+ |+|+| |+|+|+++|
T Consensus 11 ~~~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~R 86 (112)
T 1j26_A 11 KQASSYIPLDRL----SISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSR 86 (112)
T ss_dssp CSSCCCCCTTTS----EEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCS
T ss_pred cceEEecChHHe----EEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCcc
Confidence 333466888888 9999999999999999999999998 99986 999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhHhc
Q 043141 72 SQHKNRVSALSRLRTLLALNVRS 94 (135)
Q Consensus 72 Sq~~Nk~~A~~rL~~~l~~~~~~ 94 (135)
||++||++||++|+++|..++..
T Consensus 87 SQ~~Nr~~Al~rL~~~l~~a~~~ 109 (112)
T 1j26_A 87 YQFRNLAECLQKIRDMIAEASGP 109 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999988753
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.94 E-value=2.9e-27 Score=178.74 Aligned_cols=84 Identities=31% Similarity=0.525 Sum_probs=74.9
Q ss_pred CcCCcccChhhhhccceEEEEeccCCCccCCCccCceEEEE------EcCC-----------------e-eEEEeccccC
Q 043141 17 KKNYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIK------HVPT-----------------G-VIAQAAEDRS 72 (135)
Q Consensus 17 ~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK~~t~V~l~------h~pt-----------------G-i~v~~~e~RS 72 (135)
++..+.|+++|| +|+|+|||||||||||||+|+|+|+ |||+ | |+|+|+++||
T Consensus 4 i~~~i~I~~~el----~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RS 79 (140)
T 4dh9_Y 4 ISRHVAIPDGEL----EITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRS 79 (140)
T ss_dssp CCSSSCCCTTCS----EEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSS
T ss_pred ccCCCccChHHe----EEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcC
Confidence 455688999998 9999999999999999999999999 6997 5 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcccccCCCCCC
Q 043141 73 QHKNRVSALSRLRTLLALNVRSSVKLDAYSPP 104 (135)
Q Consensus 73 q~~Nk~~A~~rL~~~l~~~~~~~~~~~~~~~~ 104 (135)
|++|+++|+++|.++|..++..+.+..+..|.
T Consensus 80 Q~~Nr~~A~~rL~~~l~~a~~~pk~R~~tkpt 111 (140)
T 4dh9_Y 80 QELNREAALARLVAMIKELTTEKKARRPTRPT 111 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcCCCCc
Confidence 99999999999999999998877666555443
No 11
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=71.22 E-value=2.3 Score=28.55 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCCccCCCcc--CceEEEEEcC----Ce-eEEEeccccCHHHHHHHHHHHHHHHHHHhHhcc
Q 043141 41 GPGGQHINKR--ESAVRIKHVP----TG-VIAQAAEDRSQHKNRVSALSRLRTLLALNVRSS 95 (135)
Q Consensus 41 GPGGQ~VNK~--~t~V~l~h~p----tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~~~~~ 95 (135)
||||.++++- .|.|+|..-+ +| +.|... ..+-+.|..++.+++....+..
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-----~e~v~~A~~~I~~i~~~~~~~~ 89 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-----KEGIEKARHEVLLISAEQDKRS 89 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-----HHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-----HHHHHHHHHHHHHHhhcccccc
Confidence 8999999953 4666666543 46 555443 4677889888888877655543
No 12
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=61.94 E-value=4.5 Score=27.37 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=33.7
Q ss_pred CCCccCCCc--cCceEEEEEcCCe--------eEEEeccccCHHHHHHHHHHHHHHHHHHhHh
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG--------VIAQAAEDRSQHKNRVSALSRLRTLLALNVR 93 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG--------i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~~~ 93 (135)
||||.++|+ -.|.|+|..-+.| ++|... ..|-+.|..++..++.....
T Consensus 33 GkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-----~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 33 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-----EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-----HHHHHHHHHHHHHHHHHHHh
Confidence 899999995 4678888776555 444432 35778898888887765443
No 13
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=60.55 E-value=3.8 Score=26.06 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCCccCCCc--cCceEEEEEcCCe-----eEEEeccccCHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG-----VIAQAAEDRSQHKNRVSALSRLRTL 87 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG-----i~v~~~e~RSq~~Nk~~A~~rL~~~ 87 (135)
||||.++|+ -+|.|+|..-++| +.|... . .+-+.|.+++..+
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~--~---~~v~~A~~~I~~i 69 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD--P---QGVQQAKRELLEL 69 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES--S---HHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC--H---HHHHHHHHHHHHH
Confidence 899999995 5688888877666 344433 1 4677787777654
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.91 E-value=9.8 Score=25.60 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=34.0
Q ss_pred CCCccCCCc--cCceEEEEEcCCe------eEEEeccccCHHHHHHHHHHHHHHHHHHhHhc
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG------VIAQAAEDRSQHKNRVSALSRLRTLLALNVRS 94 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG------i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~~~~ 94 (135)
||||..+++ -.|.|+|..-+.| +.|... ..|-+.|.+.+..++......
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-----~e~v~~A~~~I~~i~~e~~~~ 89 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-----PENVEEAIDHILNLEEEYLAD 89 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-----HHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 889999984 4577887765555 333322 367889999988887665553
No 15
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.83 E-value=12 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCccCCCccC---ceEEEEEcC-Ce-eEEEeccccCHHHHHHHHHHHHHHHHHHhHhc
Q 043141 41 GPGGQHINKRE---SAVRIKHVP-TG-VIAQAAEDRSQHKNRVSALSRLRTLLALNVRS 94 (135)
Q Consensus 41 GPGGQ~VNK~~---t~V~l~h~p-tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~~~~ 94 (135)
|+||+++++.- ++|+|.+-. ++ |+|+-. ...-+.|...|..++......
T Consensus 43 G~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~-----~~~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHIEFTEGEDKITLEGP-----TEDVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEEEECSSSCEEEEEEC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEEEeCCCCCEEEEECC-----HHHHHHHHHHHHHHHHHHHhh
Confidence 88999999643 468875432 23 444433 567888888888877654443
No 16
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=51.41 E-value=8.1 Score=26.18 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCCccCCCc--cCceEEEEEcC--------Ce-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVP--------TG-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~p--------tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
|+||..+++ -.|.|+|.--+ ++ ++|..... +-+.|.+.+.+++..
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSE 86 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhh
Confidence 899999983 45666665432 45 55555432 568888888888764
No 17
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=50.43 E-value=7.6 Score=26.30 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred cCCCccCCCcc--Cc-eEEEEEcCCe-----eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 40 SGPGGQHINKR--ES-AVRIKHVPTG-----VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 40 SGPGGQ~VNK~--~t-~V~l~h~ptG-----i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
=||||..+++- .+ .|.|.+-.+| +.|.... .+-+.|.+++..++..
T Consensus 32 IG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-----~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 32 IGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-----SDVEKAKKQLLHLAEE 85 (95)
T ss_dssp HCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-----HHHHHHHHHHHHHHhh
Confidence 38999999954 45 6887765566 4444432 2778888888877654
No 18
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=47.98 E-value=15 Score=25.10 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=33.9
Q ss_pred CCCccCCCc--cCceEEEEEcCCe-----eEEEeccccCHHHHHHHHHHHHHHHHHHhHh
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG-----VIAQAAEDRSQHKNRVSALSRLRTLLALNVR 93 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG-----i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~~~ 93 (135)
||||-++++ -.|.|.|..-+.| ++|... . .+-+.|.+++..++.....
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHHhhHHH
Confidence 899999995 4688888776554 444433 2 6788898888887765443
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=47.89 E-value=7.6 Score=24.64 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCccCCCc--cCceEEEEEcCCe-----eEEEeccccCHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG-----VIAQAAEDRSQHKNRVSALSRLRTLLA 89 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG-----i~v~~~e~RSq~~Nk~~A~~rL~~~l~ 89 (135)
|+||.+++. -.|.++|.-.+.| +.|... ..+-..|++.+.++|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-----~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP-----TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-----HHHHHHHHHHHHHHHh
Confidence 899999994 4677888776665 333332 3566778777777664
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=44.04 E-value=7.9 Score=24.54 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=27.7
Q ss_pred CCCccCCCc--cCceEEEEEcC------Ce-eEEEeccccCHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVP------TG-VIAQAAEDRSQHKNRVSALSRLRTLLA 89 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~p------tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~ 89 (135)
|+||.+++. -.|.++|...+ ++ +.|... ..+-+.|...+.++|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-----AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-----HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-----HHHHHHHHHHHHHHHH
Confidence 889999883 44666666543 34 444432 4566778777777654
No 21
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=41.23 E-value=19 Score=24.71 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCccCCCc--cCceEEEEEcCCe-------eEEEeccccCHHHHHHHHHHHHHHHHHHh
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG-------VIAQAAEDRSQHKNRVSALSRLRTLLALN 91 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG-------i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~ 91 (135)
|+||.++++ ..|.|+|...+.+ ++|.-. ..+.+.|.+.+.+++...
T Consensus 27 GkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-----~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 27 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-----PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-----HHHHHHHHHHHHHHHhcc
Confidence 788999884 3566666654322 344432 467778888877776543
No 22
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.08 E-value=18 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=27.1
Q ss_pred cCCCccCCCc----cCceEEEEEc--------------CCe-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 40 SGPGGQHINK----RESAVRIKHV--------------PTG-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 40 SGPGGQ~VNK----~~t~V~l~h~--------------ptG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
=||||.++++ +..+|.|+=. ..| +.|.+... .+.+.|.+++..+|..
T Consensus 34 IGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 34 EGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGLAAAKKLCENLLQT 99 (119)
T ss_dssp SCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHHHHHHHHHHHHhhc
Confidence 3788888864 3444444311 234 66666542 4566777777776653
No 23
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.12 E-value=11 Score=24.83 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=19.9
Q ss_pred EeccccCHHHHHHHHHHHHHHHH
Q 043141 66 QAAEDRSQHKNRVSALSRLRTLL 88 (135)
Q Consensus 66 ~~~e~RSq~~Nk~~A~~rL~~~l 88 (135)
-++++|.+..+...||++|+..|
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~V 40 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELV 40 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHC
Confidence 45788999999999999998874
No 24
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.65 E-value=15 Score=26.37 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=15.4
Q ss_pred Ce-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 61 TG-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 61 tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
.| +.|.+.. ....+.|++.+..+|..
T Consensus 73 ~lhV~I~a~~----~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTANT----MENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEESS----HHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEECC----HHHHHHHHHHHHHHHhc
Confidence 44 6666654 24566777666666544
No 25
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=35.67 E-value=15 Score=22.93 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=26.0
Q ss_pred CCCccCCCc--cCceEEEEEcCC---------e-eEEEeccccCHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVPT---------G-VIAQAAEDRSQHKNRVSALSRLRTLL 88 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~pt---------G-i~v~~~e~RSq~~Nk~~A~~rL~~~l 88 (135)
|+||.+++. -.|.++|...+. + +.|.-. ..+-+.|...+.+++
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-----PAATQAAQYLISQRV 73 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-----HHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-----HHHHHHHHHHHHHHH
Confidence 889999883 446666665432 3 334322 356677777776654
No 26
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=33.86 E-value=21 Score=25.05 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=28.8
Q ss_pred CCCccCCC--ccCceEEEEEcC------Ce-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHIN--KRESAVRIKHVP------TG-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 41 GPGGQ~VN--K~~t~V~l~h~p------tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
|+||.+++ ...|.|+|...+ .+ ++|... ..+.+.|...+.++|..
T Consensus 107 Gk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 107 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-----PDRCEHAARIINDLLQS 160 (164)
T ss_dssp CSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-----HHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-----HHHHHHHHHHHHHHHhh
Confidence 78888887 345667776543 23 333322 35788888888877754
No 27
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=32.48 E-value=21 Score=23.28 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCCccCCCc--cCceEEEEEcC------Ce-eEEEeccccCHHHHHHHHHHHHHHHHHHh
Q 043141 41 GPGGQHINK--RESAVRIKHVP------TG-VIAQAAEDRSQHKNRVSALSRLRTLLALN 91 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~p------tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~ 91 (135)
|+||.++++ -.|.|+|...+ .+ ++|.-. ..+.+.|.+.+.+++.+.
T Consensus 30 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-----~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 30 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-----QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-----HHHHHHHHHHHHHHHHhh
Confidence 788888883 34566655433 24 444432 357788888887776643
No 28
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=32.19 E-value=26 Score=22.42 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=27.7
Q ss_pred CCCccCCCc--cCceEEEEEcCC------e-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVPT------G-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~pt------G-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
|+||.+++. -.|.++|...+. + ++|.-. ..+-+.|...+.+++..
T Consensus 23 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 23 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-----QDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-----HHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-----HHHHHHHHHHHHHHHHh
Confidence 888999883 446666654321 2 444432 35667788777777654
No 29
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=31.91 E-value=34 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEeccCCCccCCCccCceEEEEEcCCe
Q 043141 35 DTYKSSGPGGQHINKRESAVRIKHVPTG 62 (135)
Q Consensus 35 ~~~RsSGPGGQ~VNK~~t~V~l~h~ptG 62 (135)
++.||+|--.|-+.|....+.|+ ||+|
T Consensus 80 ~laRsAGt~a~ii~ke~~~~~vr-LPSG 106 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQ-LPSK 106 (136)
T ss_pred EEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 38999999999998876666555 7888
No 30
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=31.87 E-value=39 Score=22.14 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=27.5
Q ss_pred CCCccCCCc--cCceEEEEEcCC------e-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVPT------G-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~pt------G-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
|+||.++++ -.|.|+|...+. . ++|.-. ..+-+.|...+.++|..
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-----~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 31 GRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-----PESVQSAKRLLDQIVEK 84 (92)
T ss_dssp CSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-----HHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-----HHHHHHHHHHHHHHHHh
Confidence 788888874 346666665442 2 334332 35677787777777654
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=30.48 E-value=20 Score=23.14 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCCccCCCc--cCceEEEEEcCCe---------eEEEeccccCHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVPTG---------VIAQAAEDRSQHKNRVSALSRLRTLL 88 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptG---------i~v~~~e~RSq~~Nk~~A~~rL~~~l 88 (135)
|+||..++. -.|.|+|.-..+| +.|..+ ..+.+.|.+.+.+++
T Consensus 30 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~-----~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 30 GKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD-----PYKVQQACEMVMDIL 83 (85)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEEC-----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeC-----HHHHHHHHHHHHHHh
Confidence 778888773 4466666654443 444431 235666777666655
No 32
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=30.03 E-value=12 Score=24.02 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCCccCCCc--cCceEEEEEcC------Ce-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 043141 41 GPGGQHINK--RESAVRIKHVP------TG-VIAQAAEDRSQHKNRVSALSRLRTLLAL 90 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~p------tG-i~v~~~e~RSq~~Nk~~A~~rL~~~l~~ 90 (135)
|+||.+++. -.|.++|...+ .+ +.|... ..+-+.|...+.+++..
T Consensus 22 GkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-----~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 22 GRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-----AASISLAQYLINARLSS 75 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-----HHHHHHHHHHHHHHTC-
T ss_pred CCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-----HHHHHHHHHHHHHHHHh
Confidence 889999984 34666666543 23 444432 25667777777766543
No 33
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=27.39 E-value=38 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCccCCCc--cCceEEEEEcCC-----e---eEEEeccccCHHHHHHHHHHHHHHHHHHh
Q 043141 41 GPGGQHINK--RESAVRIKHVPT-----G---VIAQAAEDRSQHKNRVSALSRLRTLLALN 91 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~pt-----G---i~v~~~e~RSq~~Nk~~A~~rL~~~l~~~ 91 (135)
|+||.+++. -.|.++|...+. | -.|....+ ..+-+.|...+.++|...
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhcc
Confidence 888998883 446666654332 1 22322222 457788988888887654
No 34
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=26.01 E-value=37 Score=22.34 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCCcCCcccChhhhhccceEEEEeccCCCccCCCc--cCceEEEEEcCCe---------eEEEeccccCHHHHHHHHHHH
Q 043141 15 SSKKNYLELTDDELFRECEMDTYKSSGPGGQHINK--RESAVRIKHVPTG---------VIAQAAEDRSQHKNRVSALSR 83 (135)
Q Consensus 15 ~~~~~~~~i~~~~L~~~~~~~~~RsSGPGGQ~VNK--~~t~V~l~h~ptG---------i~v~~~e~RSq~~Nk~~A~~r 83 (135)
......+.||.+.+- +==|+||.+++. -.|.|+|.....+ ++|..+. .+.+.|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG--------~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~-----~~v~~A~~~ 79 (94)
T 1x4m_A 13 GNAVQEIMIPASKAG--------LVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP-----YKVQQAKEM 79 (94)
T ss_dssp CCEEEEEEECHHHHH--------HHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECT-----TTHHHHHHH
T ss_pred CcEEEEEEEChhhcc--------eEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCH-----HHHHHHHHH
Confidence 334445556666541 122889999983 4566666654322 5555422 245667666
Q ss_pred HHHHH
Q 043141 84 LRTLL 88 (135)
Q Consensus 84 L~~~l 88 (135)
+.++|
T Consensus 80 I~~~i 84 (94)
T 1x4m_A 80 VLELI 84 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 35
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=24.94 E-value=27 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.5
Q ss_pred EeccccCHHHHHHHHHHHHHHHH
Q 043141 66 QAAEDRSQHKNRVSALSRLRTLL 88 (135)
Q Consensus 66 ~~~e~RSq~~Nk~~A~~rL~~~l 88 (135)
.++++|++..+-..||+.|+..|
T Consensus 29 ~~~~~r~Rm~~lN~AF~~LR~~v 51 (97)
T 4aya_A 29 PVDDPMSLLYNMNDCYSKLKELV 51 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHHHHHC
Confidence 36788999999999999998764
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=21.85 E-value=30 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=30.2
Q ss_pred CCCccCCCc--cCceEEEEEcCCee-------EEEeccccCHHHHHHHHHHHHHHHHHHh
Q 043141 41 GPGGQHINK--RESAVRIKHVPTGV-------IAQAAEDRSQHKNRVSALSRLRTLLALN 91 (135)
Q Consensus 41 GPGGQ~VNK--~~t~V~l~h~ptGi-------~v~~~e~RSq~~Nk~~A~~rL~~~l~~~ 91 (135)
|+||.+++. ..|.|+|.....+. .|.-... ..+-+.|...+.++|...
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHHH
Confidence 889999885 35778876544431 3333322 356777887777777654
No 37
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=21.13 E-value=2.1e+02 Score=21.15 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=33.8
Q ss_pred ceEEEEe-ccCCCccCCCccCceEEEEEcCCe------eEEEeccc----cCHHHHHHHHHHHHHHHH
Q 043141 32 CEMDTYK-SSGPGGQHINKRESAVRIKHVPTG------VIAQAAED----RSQHKNRVSALSRLRTLL 88 (135)
Q Consensus 32 ~~~~~~R-sSGPGGQ~VNK~~t~V~l~h~ptG------i~v~~~e~----RSq~~Nk~~A~~rL~~~l 88 (135)
..+++.. ++.|||- |.+.+.+.|++.+.| +.+...++ |.|..---.||.+-.++|
T Consensus 64 ~~vqiL~eg~~~ggg--~~rasGm~l~Yk~~g~~~~~ql~lt~~~d~~~~kk~s~aWlaAm~KA~Kll 129 (141)
T 2rrf_A 64 STVQILTEGFPPGGG--NARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLL 129 (141)
T ss_dssp CCEECCCCSSCSSSS--SCCCSCCEEEECCTTSSSCEEEEEECCCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCCCCC--cceeeEEEEEeeCCCccceeEEEEeeccccCcchhhhHHHHHHHHHHHHHH
Confidence 4566666 7888743 678899999998766 45555544 334444444454444443
Done!