RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043141
         (135 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 112

 Score = 59.6 bits (144), Expect = 3e-13
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 25/84 (29%)

Query: 31  ECEMDTYKSSGPGGQHINKRESAVRIKH-------------------------VPTGVIA 65
              +   +SSGPGGQ++NK  S   ++                              ++ 
Sbjct: 21  RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80

Query: 66  QAAEDRSQHKNRVSALSRLRTLLA 89
            +   R Q +N    L ++R ++A
Sbjct: 81  TSESSRYQFRNLAECLQKIRDMIA 104


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 51.2 bits (122), Expect = 3e-09
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 31  ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
           +  +D Y++SG GGQH+N+ ESAVRI H+PTG++ Q   DRSQHKN+  A+ +++  L
Sbjct: 235 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKL 292


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 26/56 (46%), Positives = 43/56 (76%)

Query: 30  RECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLR 85
            + +++T+++SG GGQ++NK ESAVRI H+PTG++     +RSQ++N+ +AL  LR
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILR 251


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 47.4 bits (112), Expect = 7e-08
 Identities = 28/58 (48%), Positives = 43/58 (74%)

Query: 31  ECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAEDRSQHKNRVSALSRLRTLL 88
           +  +DT++SSG GGQH+N  +SA+RI H+PTG++ +  ++RSQHKN+  ALS L   +
Sbjct: 211 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARI 268


>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
           1 (Tip47), C-terminal domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 226

 Score = 23.7 bits (51), Expect = 8.9
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 19  NYLELTDDELFRECEMDTYKSSGPGGQHINKRESAVRIKHVPTGVIAQAAE---DRSQHK 75
           N L LT+ EL                Q   ++   VR+  +   +   A E    + Q+ 
Sbjct: 1   NRLPLTEAELALIATPPEDSDMASLQQQRQEQNYFVRLGSLSERLRNHAYEHSLGKLQNA 60

Query: 76  NRVS--ALSRLRTLLAL--NVRSSVKLDAYSPPPQLLQI 110
            + +   L +L ++L L  +V+  V         +L Q+
Sbjct: 61  RQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQM 99


>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
          mellifera) [TaxId: 7460]}
          Length = 134

 Score = 23.3 bits (50), Expect = 9.3
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 10/42 (23%)

Query: 1  MCYHTNDNCSSSSSSSKKNY----------LELTDDELFREC 32
           C  T+D C    S+ +  +          L    D+ F +C
Sbjct: 29 ACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKFYDC 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.361 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 446,125
Number of extensions: 17095
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 6
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.8 bits)