BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043142
(512 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/546 (41%), Positives = 345/546 (63%), Gaps = 40/546 (7%)
Query: 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE 66
P LATKL+ +YS + A ++FD+ +R +++WN L RA G E + LY+++
Sbjct: 112 PFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNR 171
Query: 67 IGLVPDNFTFPFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
IG+ D FT+ + LKAC A ++ + +G+ IH + R + + V++ L+DMYA+
Sbjct: 172 IGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFG 231
Query: 123 CVVNARQVFDKILERD-----------------------------------PSEATLVTV 147
CV A VF + R+ P+ T+V+V
Sbjct: 232 CVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSV 291
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
+ A A +AAL QG+ +HG+ R + + V +ALV MY +CG ++V + +F+++ ++ V
Sbjct: 292 LQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDV 351
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266
VSWN++I+ Y +HG+ KA+ +FE+M + P +TFV VL ACS GL +EG+ FE+
Sbjct: 352 VSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFET 411
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVK 326
M RD+ I P ++HY CMVDLLG + RLDEA ++ MR +P P VWG+LL SC++HG+V+
Sbjct: 412 MWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVE 471
Query: 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK 386
LAE A +L LEP +AGNYV+L++IYA A W+ V +++KL+ RG++K W+EV+
Sbjct: 472 LAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531
Query: 387 NKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446
K ++F+S D +P ++I+A L L MKE GY+P T+ V +++E +EK ++ HSE
Sbjct: 532 RKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSE 591
Query: 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGIC 506
+LA+AFGLINT G + ITKNL++C+DCH+ KFISK E+EI VRDVNR+H FK+G+C
Sbjct: 592 KLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVC 651
Query: 507 SCGDYW 512
SCGDYW
Sbjct: 652 SCGDYW 657
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 163/379 (43%), Gaps = 48/379 (12%)
Query: 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIR 101
N LI++ G + AI R+L P T+ + C S++ + R+H ++
Sbjct: 50 NQLIQSLCKEGKLKQAI----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDKI--------------------------- 134
N + D F+ LI MY+ V AR+VFDK
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165
Query: 135 --------LERDPSEATLV--TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184
+E D T V +++ + L +G+E+H R + +V + T LVD
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVD 225
Query: 185 MYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ---PDH 241
MYA+ G V A +F + + VVSW+AMI YA +G + +AL F +M E + P+
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285
Query: 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301
+T V VL AC+ ++G++ ++R +D + + +V + G G+L+ +
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGKLEVGQRVFD 344
Query: 302 QMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE--LEPHDAGNYVILSNIYARAANW 359
+M + D W +L++S +HG+ K A E+++ P +L
Sbjct: 345 RMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 360 EGVAKLRKLMIDRGIKKSI 378
EG + D GIK I
Sbjct: 404 EGKRLFETMWRDHGIKPQI 422
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 119/258 (46%), Gaps = 37/258 (14%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G+ H + T LV +Y+ C+ A +F +P RN+ W+ +I YA NG A+ +
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271
Query: 62 YRLLE--IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119
++ P++ T L+AC++L+A+E+G+ IH ++R ++ + V +AL+ MY
Sbjct: 272 REMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYG 331
Query: 120 KCSCVVNARQVFDKILERD---------------------------------PSEATLVT 146
+C + ++VFD++ +RD P+ T V+
Sbjct: 332 RCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVS 391
Query: 147 VISASADIAALPQGRELHGFSWR-HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR-E 204
V+ A + + +G+ L WR H + ++ +VD+ + + A + + +R E
Sbjct: 392 VLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
Query: 205 KRVVSWNAMITGYAMHGH 222
W +++ +HG+
Sbjct: 452 PGPKVWGSLLGSCRIHGN 469
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/545 (42%), Positives = 331/545 (60%), Gaps = 35/545 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF ++T LV +Y+ C L A QLFD + +RN+ WN +I AY N + A+ ++
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIF 325
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
++L+ G+ P + + AL AC+ L +E GR IH+ + + +V V +LI MY KC
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385
Query: 122 SCVVNARQVFDKILER---------------------------------DPSEATLVTVI 148
V A +F K+ R P T V+VI
Sbjct: 386 KEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
+A A+++ + +HG R + NV V TALVDMYAKCG + +AR +F+ + E+ V
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505
Query: 209 SWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
+WNAMI GY HG AL+LFE+M K ++P+ +TF+ V+SACS GL + G F M
Sbjct: 506 TWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM 565
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
+Y I+ S+ HY MVDLLG +GRL+EA D IMQM VKP V+GA+L +C++H +V
Sbjct: 566 KENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNF 625
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
AE A E+L EL P D G +V+L+NIY A+ WE V ++R M+ +G++K+ CS +E+KN
Sbjct: 626 AEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKN 685
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
+ H+F SG +HP+ +IYA L+ L +KEAGYVP T V VEND K ++ HSE+
Sbjct: 686 EVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEK 744
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAI+FGL+NT GT + + KNL++C DCH A K+IS +T REI VRD+ R+HHFK+G CS
Sbjct: 745 LAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACS 804
Query: 508 CGDYW 512
CGDYW
Sbjct: 805 CGDYW 809
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 183/368 (49%), Gaps = 36/368 (9%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF T L ++Y+ C ++ A ++FDR+P+R+L WN ++ Y+ NG +A+E+
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ E L P T L A SAL I G+ IH +R+ +++ V + AL+DMYAKC
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKC 284
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
+ ARQ+FD +LER+ P++ +++ +
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
A AD+ L +GR +H S + NV V +L+ MY KC V A ++F +L+ + +V
Sbjct: 345 HACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLV 404
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
SWNAMI G+A +G AL+ F +M+ V+PD T+V V++A + + + +
Sbjct: 405 SWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVV 464
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
+R +D +V T +VD+ G + A LI M + W A+++ HG K
Sbjct: 465 MRSC-LDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522
Query: 328 AELALEKL 335
A E++
Sbjct: 523 ALELFEEM 530
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 174/340 (51%), Gaps = 36/340 (10%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
TKLV L+ + A ++F+ I + L++ +++ +A + A++ + R+ +
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130
P + F + LK C + + G+ IH ++++ + D+F L +MYAKC V AR+V
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 131 FDKILERD---------------------------------PSEATLVTVISASADIAAL 157
FD++ ERD PS T+V+V+ A + + +
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGY 217
G+E+HG++ R F+ V + TALVDMYAKCG ++ AR LF+ + E+ VVSWN+MI Y
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 218 AMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS 276
+ + +A+ +F+KM DE V+P ++ +G L AC+ G + GR F + + +D +
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELGLDRN 371
Query: 277 VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316
V ++ + +D A + +++ + W A++
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS-WNAMI 410
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK-DEV 237
+T LV ++ + G V A +FE + K V ++ M+ G+A KAL F +M+ D+V
Sbjct: 72 QTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV 131
Query: 238 QPDHITFVGVLSAC 251
+P F +L C
Sbjct: 132 EPVVYNFTYLLKVC 145
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/524 (41%), Positives = 327/524 (62%), Gaps = 34/524 (6%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82
+ + ++F+ +P++++ +N +I YA +G YE A+ + + L PD+FT L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---- 138
S + +G+ IH VIR ++DV++G++L+DMYAK + + ++ +VF ++ RD
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 139 -----------------------------PSEATLVTVISASADIAALPQGRELHGFSWR 169
P +VI A A +A L G++LHG+ R
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371
Query: 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDL 229
F N+ + +ALVDMY+KCG +K AR +F+++ VSW A+I G+A+HGH +A+ L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 230 FEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288
FE+MK + V+P+ + FV VL+ACS GL DE +F SM + Y ++ ++HY + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348
+G+L+EA + I +M V+P VW LL+SC +H +++LAE EK+ ++ + G YV+
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551
Query: 349 LSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAK 408
+ N+YA W+ +AKLR M +G++K ACSWIE+KNK H F+SGD SHP+ D+I
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611
Query: 409 LKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKN 468
LK + +M++ GYV T V HDV+ + K ++ HSERLA+AFG+INT GT + +TKN
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 671
Query: 469 LKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
++IC DCH+AIKFISKITEREI VRD +R+HHF G CSCGDYW
Sbjct: 672 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 41/311 (13%)
Query: 10 ATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL 69
A+ ++ +Y+ LH A LF + + W +IR + + A+ + + G
Sbjct: 42 ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGR 101
Query: 70 VPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC---SCVVN 126
PD+ FP LK+C+ + + G +H ++R + D++ G AL++MYAK ++
Sbjct: 102 CPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKIS 161
Query: 127 ARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY 186
VFD++ +R + + +VK +T ++
Sbjct: 162 VGNVFDEMPQRTSNSG------------------------------DEDVKAETCIMPF- 190
Query: 187 AKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFV 245
G+ V R +FE + K VVS+N +I GYA G AL + +M +++PD T
Sbjct: 191 ---GIDSV-RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRV 305
VL S +G+ ++R ID V + +VD+ S R++++ + ++
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305
Query: 306 KPDPGVWGALL 316
+ D W +L+
Sbjct: 306 R-DGISWNSLV 315
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GFG + +A+ LV +YS C + A ++FDR+ + W +I +A +G A+ L+
Sbjct: 373 GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEG 92
+ G+ P+ F L ACS + ++E
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 140 SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLF 199
S+A + T+I I + Q ++LH R + L+ + ++ +Y L+ A LF
Sbjct: 4 SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLF 62
Query: 200 EQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACS 252
+ L+ V++W ++I + +KAL F +M+ + PDH F VL +C+
Sbjct: 63 KTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/548 (40%), Positives = 333/548 (60%), Gaps = 41/548 (7%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP-QRNLFLWNVLIRAYAWNGPYEVAIEL 60
GF F + T L+ YS C + +A +LF I N+ W +I + N E A++L
Sbjct: 325 GFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDL 384
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ + G+ P+ FT+ L A +S E +H V++ +E VG AL+D Y K
Sbjct: 385 FSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
V A +VF I ++D P+E T ++
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 148 ISA-SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
++ +A A++ QG++ HGF+ + R + ++ V +AL+ MYAK G ++ A +F++ REK
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD 560
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFE 265
+VSWN+MI+GYA HG + KALD+F++MK +V+ D +TF+GV +AC+ GL +EG +F+
Sbjct: 561 LVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFD 620
Query: 266 SMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHV 325
MVRD I P+ +H +CMVDL +G+L++A +I M +W +L +C++H
Sbjct: 621 IMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKT 680
Query: 326 KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEV 385
+L LA EK+I ++P D+ YV+LSN+YA + +W+ AK+RKLM +R +KK SWIEV
Sbjct: 681 ELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740
Query: 386 KNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHS 445
KNK ++FL+GD SHP D+IY KL+ L R+K+ GY P T V D++++ K ++ HS
Sbjct: 741 KNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHS 800
Query: 446 ERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHF-KDG 504
ERLAIAFGLI TP G+ LLI KNL++C DCH+ IK I+KI EREI VRD NR+HHF DG
Sbjct: 801 ERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDG 860
Query: 505 ICSCGDYW 512
+CSCGD+W
Sbjct: 861 VCSCGDFW 868
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 162/363 (44%), Gaps = 43/363 (11%)
Query: 3 FGF--HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
FGF + T LV Y + ++FD + +RN+ W LI YA N + + L
Sbjct: 122 FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTL 181
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ R+ G P++FTF AL + G ++H V++N + + V +LI++Y K
Sbjct: 182 FMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLK 241
Query: 121 CSCVVNARQVFDKILERDP---------------------------------SEATLVTV 147
C V AR +FDK + SE++ +V
Sbjct: 242 CGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASV 301
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR-EKR 206
I A++ L +LH ++ F + ++TAL+ Y+KC + A LF+++
Sbjct: 302 IKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGN 361
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFE 265
VVSW AMI+G+ + +A+DLF +MK + V+P+ T+ +L+A + + +
Sbjct: 362 VVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQ 418
Query: 266 SMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHV 325
+ +Y +V T ++D G+++EA + + K D W A+L G
Sbjct: 419 VVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGET 475
Query: 326 KLA 328
+ A
Sbjct: 476 EAA 478
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 34/264 (12%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82
L+NAH LFD+ P R+ + L+ ++ +G + A L+ + +G+ D F LK
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102
Query: 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---- 138
+ L GR++H I+ + DV VG +L+D Y K S + R+VFD++ ER+
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162
Query: 139 -----------------------------PSEATLVTVISASADIAALPQGRELHGFSWR 169
P+ T + A+ +G ++H +
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222
Query: 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDL 229
+ + + V +L+++Y KCG V+ AR LF++ K VV+WN+MI+GYA +G +AL +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282
Query: 230 FEKMK-DEVQPDHITFVGVLSACS 252
F M+ + V+ +F V+ C+
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCA 306
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/548 (39%), Positives = 334/548 (60%), Gaps = 37/548 (6%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFD--RIPQRNLFLWNVLIRAYAWNGPYEVAI 58
+GF + L+ LY+ C L +A +F+ +P+R + W ++ AYA NG A+
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 59 ELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118
E++ ++ ++ + PD L A + L +++GR IH V++ E + + +L MY
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 119 AKCSCVVNARQVFDKI-------------------------------LERD--PSEATLV 145
AKC V A+ +FDK+ + +D P ++
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
+ ISA A + +L Q R ++ + R + +V + +AL+DM+AKCG V+ AR +F++ ++
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264
VV W+AMI GY +HG + +A+ L+ M + V P+ +TF+G+L AC+ G+ EG FF
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
M D+ I+P QHY C++DLLG +G LD+A ++I M V+P VWGALL++CK H H
Sbjct: 448 NRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506
Query: 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
V+L E A ++L ++P + G+YV LSN+YA A W+ VA++R M ++G+ K + CSW+E
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Query: 385 VKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCH 444
V+ + AF GD SHP +EI +++W+E R+KE G+V ++ HD+ ++E +C H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626
Query: 445 SERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDG 504
SER+AIA+GLI+TP GT L ITKNL+ C +CH A K ISK+ +REI VRD NR+HHFKDG
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686
Query: 505 ICSCGDYW 512
+CSCGDYW
Sbjct: 687 VCSCGDYW 694
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 199/382 (52%), Gaps = 44/382 (11%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G F L TKL+H S+ + A Q+FD +P+ +F WN +IR Y+ N ++ A+ +
Sbjct: 47 LGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLM 106
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
Y + + PD+FTFP LKACS LS ++ GR +H V R ++ DVFV LI +YAK
Sbjct: 107 YSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAK 166
Query: 121 CSCVVNARQVFDKI-----------------------------------LERDPSEATLV 145
C + +AR VF+ + ++ P LV
Sbjct: 167 CRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALV 226
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
+V++A + L QGR +H + E+ + +L MYAKCG V A+ LF++++
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSP 286
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264
++ WNAMI+GYA +G++ +A+D+F +M +V+PD I+ +SAC++ G ++ R +
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Query: 265 ESMVR-DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG 323
E + R DY D + + ++D+ G + E L+ + D VW A++ LHG
Sbjct: 347 EYVGRSDYRDDVFIS--SALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Query: 324 HVKLAELALEKLIE---LEPHD 342
+ A ++L + +E + P+D
Sbjct: 404 RAREA-ISLYRAMERGGVHPND 424
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 142/276 (51%), Gaps = 13/276 (4%)
Query: 59 ELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118
+++ RLL +GL F + A S+ I R++ +D+ R + +F A+I Y
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQ----IFPWNAIIRGY 94
Query: 119 AKCSCVVNARQVFD--KILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNV 176
++ + +A ++ ++ P T ++ A + ++ L GR +H +R F+ +V
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Query: 177 KVKTALVDMYAKCGLVKVARNLFE--QLREKRVVSWNAMITGYAMHGHSTKALDLFEKM- 233
V+ L+ +YAKC + AR +FE L E+ +VSW A+++ YA +G +AL++F +M
Sbjct: 155 FVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMR 214
Query: 234 KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR-DYHIDPSVQHYTCMVDLLGHSGR 292
K +V+PD + V VL+A + +GR S+V+ I+P + + + G+
Sbjct: 215 KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQ 272
Query: 293 LDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328
+ A L +M+ P+ +W A+++ +G+ + A
Sbjct: 273 VATAKILFDKMK-SPNLILWNAMISGYAKNGYAREA 307
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/540 (42%), Positives = 321/540 (59%), Gaps = 36/540 (6%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
++ KL+ LY+ L + ++FDR+ R+L WN +I+AY N AI L+ +
Sbjct: 284 VSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR 343
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW-ETDVFVGAALIDMYAKCSCVVNA 127
+ PD T S L I R + +R W D+ +G A++ MYAK V +A
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403
Query: 128 RQVFD------------------------------KILERD----PSEATLVTVISASAD 153
R VF+ I+E + ++ T V+V+ A +
Sbjct: 404 RAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463
Query: 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM 213
AL QG +LHG ++ L+V V T+L DMY KCG ++ A +LF Q+ V WN +
Sbjct: 464 AGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTL 523
Query: 214 ITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272
I + HGH KA+ LF++M DE V+PDHITFV +LSACS GL DEG+ FE M DY
Sbjct: 524 IACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYG 583
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332
I PS++HY CMVD+ G +G+L+ A I M ++PD +WGALL++C++HG+V L ++A
Sbjct: 584 ITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIAS 643
Query: 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAF 392
E L E+EP G +V+LSN+YA A WEGV ++R + +G++K+ S +EV NK F
Sbjct: 644 EHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVF 703
Query: 393 LSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAF 452
+G+ +HP +E+Y +L L+ ++K GYVP V DVE+DEK +++ HSERLAIAF
Sbjct: 704 YTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAF 763
Query: 453 GLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
LI TP T + I KNL++C DCH KFISKITEREI VRD NR+HHFK+G+CSCGDYW
Sbjct: 764 ALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 48/418 (11%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
GF + +A L+HLYS + NA LFD +P R++ WN +I Y +G + A+ L
Sbjct: 179 FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL 238
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
L + D+ T L AC+ G IH I++ E+++FV LID+YA+
Sbjct: 239 SNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE 294
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
+ + ++VFD++ RD P TL+++
Sbjct: 295 FGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354
Query: 148 ISASADIAALPQGRELHGFSWRHRFEL-NVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
S + + + R + GF+ R + L ++ + A+V MYAK GLV AR +F L
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKD--EVQPDHITFVGVLSACSRGGLFDEGRMFF 264
V+SWN +I+GYA +G +++A++++ M++ E+ + T+V VL ACS+ G +G
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 474
Query: 265 ESMVRD-YHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLH 322
++++ ++D V T + D+ G GRL++A L Q+ RV P W L+ H
Sbjct: 475 GRLLKNGLYLDVFV--VTSLADMYGKCGRLEDALSLFYQIPRVNSVP--WNTLIACHGFH 530
Query: 323 GHVKLAELALEKLIE--LEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378
GH + A + +++++ ++P +LS EG + D GI S+
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSL 588
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 140/278 (50%), Gaps = 34/278 (12%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYR-LLEI 67
++ KLV+LY + A FD I R+++ WN++I Y G I + +L
Sbjct: 88 ISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSS 147
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
GL PD TFP LKAC + +G +IH ++ + DV+V A+LI +Y++ V NA
Sbjct: 148 GLTPDYRTFPSVLKACRT---VIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 128 RQVFDKILERDPS-----------------------------EATLVTVISASADIAALP 158
R +FD++ RD T+V+++SA +
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFN 264
Query: 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218
+G +H +S +H E + V L+D+YA+ G ++ + +F+++ + ++SWN++I Y
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 219 MHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGG 255
++ +A+ LF++M+ +QPD +T + + S S+ G
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 143/321 (44%), Gaps = 45/321 (14%)
Query: 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---------- 138
++ + +H ++ +K +V + A L+++Y V AR FD I RD
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 139 ------------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFEL 174
P T +V+ A + G ++H + + F
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLALKFGFMW 183
Query: 175 NVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234
+V V +L+ +Y++ V AR LF+++ + + SWNAMI+GY G++ +AL L ++
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243
Query: 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294
D +T V +LSAC+ G F+ G ++ + ++ + ++DL GRL
Sbjct: 244 ---AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIK-HGLESELFVSNKLIDLYAEFGRLR 299
Query: 295 EACDLIMQMRVKPDPGVWGALLNSCKLHGH-VKLAELALE-KLIELEPHDAGNYVILSNI 352
+ + +M V+ D W +++ + +L+ ++ L E +L ++P D + L++I
Sbjct: 300 DCQKVFDRMYVR-DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP-DCLTLISLASI 357
Query: 353 YARAANWEGVAKLRKLMIDRG 373
++ + ++ + +G
Sbjct: 358 LSQLGDIRACRSVQGFTLRKG 378
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/524 (41%), Positives = 324/524 (61%), Gaps = 37/524 (7%)
Query: 26 AHQLFDRIPQR-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PDNFTFPFALKAC 83
AH++F +I + N+F+WN LIR YA G A LY + GLV PD T+PF +KA
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----- 138
+ ++ + G IH VIR+ + + ++V +L+ +YA C V +A +VFDK+ E+D
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 139 -----------PSEA-----------------TLVTVISASADIAALPQGRELHGFSWRH 170
P EA T+V+++SA A I AL G+ +H + +
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230
N+ L+D+YA+CG V+ A+ LF+++ +K VSW ++I G A++G +A++LF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311
Query: 231 EKMK--DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288
+ M+ + + P ITFVG+L ACS G+ EG +F M +Y I+P ++H+ CMVDLL
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371
Query: 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348
+G++ +A + I M ++P+ +W LL +C +HG LAE A ++++LEP+ +G+YV+
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431
Query: 349 LSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAK 408
LSN+YA W V K+RK M+ G+KK S +EV N+ H FL GD SHP D IYAK
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491
Query: 409 LKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKN 468
LK + GR++ GYVP +V+ DVE +EK N + HSE++AIAF LI+TP+ + + + KN
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKN 551
Query: 469 LKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
L++C DCH+AIK +SK+ REI VRD +R+HHFK+G CSC DYW
Sbjct: 552 LRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 109/261 (41%), Gaps = 43/261 (16%)
Query: 154 IAALPQGRELHGFSWRHRF-----ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK-RV 207
++++ + R++H FS RH EL + LV + + + A +F ++ + V
Sbjct: 27 VSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPM-SYAHKVFSKIEKPINV 85
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACSRGGLFDEGRMFFE 265
WN +I GYA G+S A L+ +M+ V+PD T+ ++ A + G
Sbjct: 86 FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145
Query: 266 SMVRD-----YHIDPSVQH-------------------------YTCMVDLLGHSGRLDE 295
++R ++ S+ H + +++ +G+ +E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205
Query: 296 ACDLIMQMR---VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSN 351
A L +M +KPD +LL++C G + L + +I++ + + +L +
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265
Query: 352 IYARAANWEGVAKLRKLMIDR 372
+YAR E L M+D+
Sbjct: 266 LYARCGRVEEAKTLFDEMVDK 286
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/538 (40%), Positives = 331/538 (61%), Gaps = 36/538 (6%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
T L+ Y++ + NA +LFD IP +++ WN +I YA G Y+ A+EL+ +++ +
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130
PD T + AC+ +IE GR++H + + + +++ + ALID+Y+KC + A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 131 FDKILERD---------------------------------PSEATLVTVISASADIAAL 157
F+++ +D P++ T+++++ A A + A+
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 158 PQGRELHGF-SWRHRFELNVK-VKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
GR +H + R + N ++T+L+DMYAKCG ++ A +F + K + SWNAMI
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 216 GYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274
G+AMHG + + DLF +M K +QPD ITFVG+LSACS G+ D GR F +M +DY +
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 275 PSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334
P ++HY CM+DLLGHSG EA ++I M ++PD +W +LL +CK+HG+V+L E E
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 335 LIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLS 394
LI++EP + G+YV+LSNIYA A W VAK R L+ D+G+KK CS IE+ + H F+
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623
Query: 395 GDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGL 454
GD HP EIY L+ +E +++AG+VP T V ++E + K + HSE+LAIAFGL
Sbjct: 624 GDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGL 683
Query: 455 INTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
I+T GT+L I KNL++C +CH A K ISKI +REI RD R+HHF+DG+CSC DYW
Sbjct: 684 ISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 182/403 (45%), Gaps = 100/403 (24%)
Query: 26 AHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85
A +F I + NL +WN + R +A + A++LY ++ +GL+P+++TFPF LK+C+
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY--------------------------- 118
A +EG++IH V++ + D++V +LI MY
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 119 ----AKCSCVVNARQVFDKILERD---------------------------------PSE 141
A + NA+++FD+I +D P E
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 142 ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQ 201
+T+VTV+SA A ++ GR++H + H F N+K+ AL+D+Y+KCG ++ A LFE+
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 202 LREKRVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEG 260
L K V+SWN +I GY +AL LF++M + P+ +T + +L AC+ G D G
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 261 RMFF------------ESMVRDYHID--------------------PSVQHYTCMVDLLG 288
R S +R ID S+ + M+
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446
Query: 289 HSGRLDEACDLIMQMR---VKPDPGVWGALLNSCKLHGHVKLA 328
GR D + DL +MR ++PD + LL++C G + L
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 139/307 (45%), Gaps = 40/307 (13%)
Query: 60 LYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119
++ ++++IGL N+ ++ C LS EG V + E ++ + + +A
Sbjct: 52 IHAQMIKIGLHNTNYALSKLIEFC-ILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHA 110
Query: 120 KCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVK 177
S V+A +++ ++ P+ T V+ + A A +G+++HG + +L++
Sbjct: 111 LSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLY 170
Query: 178 VKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK----- 232
V T+L+ MY + G ++ A +F++ + VVS+ A+I GYA G+ A LF++
Sbjct: 171 VHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230
Query: 233 ---------------------------MKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265
MK V+PD T V V+SAC++ G + GR
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ-VH 289
Query: 266 SMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHV 325
+ D+ +++ ++DL G L+ AC L ++ K D W L+ + H+
Sbjct: 290 LWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLIGG---YTHM 345
Query: 326 KLAELAL 332
L + AL
Sbjct: 346 NLYKEAL 352
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/540 (37%), Positives = 318/540 (58%), Gaps = 36/540 (6%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
L T+L+ Y CDCL +A ++ D +P++N+ W +I Y+ G A+ ++ ++
Sbjct: 89 LRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSD 148
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128
P+ FTF L +C S + G++IH +++ +++ +FVG++L+DMYAK + AR
Sbjct: 149 GKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAR 208
Query: 129 QVFDKILERD---------------------------------PSEATLVTVISASADIA 155
++F+ + ERD P+ T ++++A + +A
Sbjct: 209 EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLA 268
Query: 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
L G++ H R ++ +L+DMY+KCG + AR LF+ + E+ +SWNAM+
Sbjct: 269 LLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLV 328
Query: 216 GYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACSRGGLFDEGRMFFESMVR-DYH 272
GY+ HG + L+LF M+DE V+PD +T + VLS CS G + D G F+ MV +Y
Sbjct: 329 GYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYG 388
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332
P +HY C+VD+LG +GR+DEA + I +M KP GV G+LL +C++H V + E
Sbjct: 389 TKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVG 448
Query: 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAF 392
+LIE+EP +AGNYVILSN+YA A W V +R +M+ + + K SWI+ + H F
Sbjct: 449 RRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYF 508
Query: 393 LSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAF 452
+ D +HP +E+ AK+K + +MK+AGYVP V +DV+ ++K M+ HSE+LA+ F
Sbjct: 509 HANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTF 568
Query: 453 GLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
GLI T +G + + KNL+IC DCH K SK+ ERE+++RD NR+H DGICSCGDYW
Sbjct: 569 GLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 49/336 (14%)
Query: 27 HQLFDRIPQRNLFLWNVL-IRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF---PFALKA 82
H+ F P N L +L I NG + A LLE+ ++ F L A
Sbjct: 9 HRSFSSSPT-NYVLQTILPISQLCSNGRLQEA------LLEMAMLGPEMGFHGYDALLNA 61
Query: 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---- 138
C A+ +G+R+H +I+ ++ ++ L+ Y KC C+ +AR+V D++ E++
Sbjct: 62 CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121
Query: 139 -----------------------------PSEATLVTVISASADIAALPQGRELHGFSWR 169
P+E T TV+++ + L G+++HG +
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK 181
Query: 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDL 229
++ ++ V ++L+DMYAK G +K AR +FE L E+ VVS A+I GYA G +AL++
Sbjct: 182 WNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241
Query: 230 FEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFF-ESMVRDYHIDPSVQHYTCMVDLL 287
F ++ E + P+++T+ +L+A S L D G+ + R+ +Q+ ++D+
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN--SLIDMY 299
Query: 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG 323
G L A L M + W A+L HG
Sbjct: 300 SKCGNLSYARRLFDNMPERTAIS-WNAMLVGYSKHG 334
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRL 64
F+ VL L+ +YS C L A +LFD +P+R WN ++ Y+ +G +EL +RL
Sbjct: 287 FYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL-FRL 345
Query: 65 L--EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVG--AALIDMYAK 120
+ E + PD T L CS + G I + ++ ++ T ++DM +
Sbjct: 346 MRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGR 405
Query: 121 CSCVVNARQVFDKILERDPSEATLVTVISA 150
+ A + F K + P+ L +++ A
Sbjct: 406 AGRIDEAFE-FIKRMPSKPTAGVLGSLLGA 434
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/555 (41%), Positives = 331/555 (59%), Gaps = 45/555 (8%)
Query: 3 FGFHP--VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
FG+ +++ L+ +YS C L +A ++FD IP+RN+ W +IR Y NG A+ L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164
Query: 61 YYRLL------EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114
+ LL + + D+ + ACS + A IH VI+ ++ V VG L
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224
Query: 115 IDMYAKCS--CVVNARQVFDKILERD----------------PSEA-------------- 142
+D YAK V AR++FD+I+++D +EA
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284
Query: 143 ----TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198
TL TV+ A + AL G+ +H R E +V V T+++DMY KCG V+ AR
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKA 344
Query: 199 FEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLF 257
F++++ K V SW AMI GY MHGH+ KAL+LF M D V+P++ITFV VL+ACS GL
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404
Query: 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLN 317
EG +F +M + ++P ++HY CMVDLLG +G L +A DLI +M++KPD +W +LL
Sbjct: 405 VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464
Query: 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKS 377
+C++H +V+LAE+++ +L EL+ + G Y++LS+IYA A W+ V ++R +M +RG+ K
Sbjct: 465 ACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP 524
Query: 378 IACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEK 437
S +E+ + H FL GD HP ++IY L L ++ EAGYV T SV HDV+ +EK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584
Query: 438 ANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNR 497
+ HSE+LAIAFG++NT G+ + + KNL++C DCH IK ISKI +RE VRD R
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644
Query: 498 YHHFKDGICSCGDYW 512
+HHFKDG CSCGDYW
Sbjct: 645 FHHFKDGGCSCGDYW 659
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 184/380 (48%), Gaps = 58/380 (15%)
Query: 24 HNAHQLFDR-IPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82
N LF+R + + ++F WN +I A +G A+ + + ++ L P +FP A+KA
Sbjct: 26 QNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKA 85
Query: 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142
CS+L I G++ H+ +++D+FV +ALI MY+ C + +AR+VFD+I +R+
Sbjct: 86 CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145
Query: 143 T---------------------------------------LVTVISASADIAALPQGREL 163
T LV+VISA + + A +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205
Query: 164 HGFSWRHRFELNVKVKTALVDMYAKCGL--VKVARNLFEQLREKRVVSWNAMITGYAMHG 221
H F + F+ V V L+D YAK G V VAR +F+Q+ +K VS+N++++ YA G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265
Query: 222 HSTKALDLFEKM-KDEVQP-DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQH 279
S +A ++F ++ K++V + IT VL A S G G+ + ++R ++ V
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIV 324
Query: 280 YTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339
T ++D+ GR++ A +M+ K + W A++ +HGH K +EL
Sbjct: 325 GTSIIDMYCKCGRVETARKAFDRMKNK-NVRSWTAMIAGYGMHGHAA-------KALELF 376
Query: 340 PH--DAG---NYVILSNIYA 354
P D+G NY+ ++ A
Sbjct: 377 PAMIDSGVRPNYITFVSVLA 396
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
MG ++ T ++ +Y C + A + FDR+ +N+ W +I Y +G A+EL
Sbjct: 316 MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALEL 375
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRR 94
+ +++ G+ P+ TF L ACS EG R
Sbjct: 376 FPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWR 409
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/545 (40%), Positives = 327/545 (60%), Gaps = 41/545 (7%)
Query: 4 GFHPV--LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G P+ L L+++Y + L++AHQLFD++PQRN+ W +I AY+ ++ A+EL
Sbjct: 91 GHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELL 150
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+L + P+ +T+ L++C+ +S + R +H +I+ E+DVFV +ALID++AK
Sbjct: 151 VLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKL 207
Query: 122 SCVVNARQVFDKILERDP---------------------------------SEATLVTVI 148
+A VFD+++ D +ATL +V+
Sbjct: 208 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVL 267
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
A +A L G + H + ++ ++ + ALVDMY KCG ++ A +F Q++E+ V+
Sbjct: 268 RACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVI 325
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
+W+ MI+G A +G+S +AL LFE+MK +P++IT VGVL ACS GL ++G +F SM
Sbjct: 326 TWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
+ Y IDP +HY CM+DLLG +G+LD+A L+ +M +PD W LL +C++ ++ L
Sbjct: 386 KKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVL 445
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
AE A +K+I L+P DAG Y +LSNIYA + W+ V ++R M DRGIKK CSWIEV
Sbjct: 446 AEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNK 505
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
+ HAF+ GD SHP E+ KL L R+ GYVP T V D+E ++ + + HSE+
Sbjct: 506 QIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEK 565
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LA+AFGL+ P + I KNL+IC DCH+ K SK+ R I +RD RYHHF+DG CS
Sbjct: 566 LALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCS 625
Query: 508 CGDYW 512
CGDYW
Sbjct: 626 CGDYW 630
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 35/299 (11%)
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
GL D+ T+ +K C + A+ EG I + N +F+ LI+MY K + + +A
Sbjct: 56 GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115
Query: 128 RQVFDK------------------------------ILERDPSEATLVTVISASADIAAL 157
Q+FD+ ++ RD + T S +
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGM 175
Query: 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGY 217
R LH + E +V V++AL+D++AK G + A ++F+++ + WN++I G+
Sbjct: 176 SDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235
Query: 218 AMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS 276
A + S AL+LF++MK + T VL AC+ L + G ++ V D
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG---MQAHVHIVKYDQD 292
Query: 277 VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKL 335
+ +VD+ G L++A + QM+ + D W +++ +G+ + A E++
Sbjct: 293 LILNNALVDMYCKCGSLEDALRVFNQMKER-DVITWSTMISGLAQNGYSQEALKLFERM 350
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/535 (40%), Positives = 313/535 (58%), Gaps = 35/535 (6%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD 72
L+ +YS C L +A +F + R++ + +I YA G A++L+ + E G+ PD
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396
Query: 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD 132
+T L C+ ++EG+R+HE + N D+FV AL+DMYAKC + A VF
Sbjct: 397 VYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFS 456
Query: 133 KILERD----------------------------------PSEATLVTVISASADIAALP 158
++ +D P E T+ V+ A A ++A
Sbjct: 457 EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFD 516
Query: 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218
+GRE+HG+ R+ + + V +LVDMYAKCG + +A LF+ + K +VSW MI GY
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576
Query: 219 MHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277
MHG +A+ LF +M+ ++ D I+FV +L ACS GL DEG FF M + I+P+V
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636
Query: 278 QHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE 337
+HY C+VD+L +G L +A I M + PD +WGALL C++H VKLAE EK+ E
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696
Query: 338 LEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDA 397
LEP + G YV+++NIYA A WE V +LRK + RG++K+ CSWIE+K + + F++GD+
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDS 756
Query: 398 SHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINT 457
S+P + I A L+ + RM E GY P T+ D E EK +C HSE+LA+A G+I++
Sbjct: 757 SNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISS 816
Query: 458 PDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
G + +TKNL++C DCH KF+SK+T REI +RD NR+H FKDG CSC +W
Sbjct: 817 GHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 182/371 (49%), Gaps = 40/371 (10%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF L +KL +Y+ C L A ++FD + WN+L+ A +G + +I L+
Sbjct: 124 GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+++ G+ D++TF K+ S+L ++ G ++H ++++ + VG +L+ Y K
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243
Query: 122 SCVVNARQVFDKILERDPSE---------------------------------ATLVTVI 148
V +AR+VFD++ ERD AT+V+V
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
+ AD + GR +H + F + L+DMY+KCG + A+ +F ++ ++ VV
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV 363
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
S+ +MI GYA G + +A+ LFE+M++E + PD T VL+ C+R L DEG+ E
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE-W 422
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLN----SCKLHG 323
+++ + + ++D+ G + EA + +MRVK D W ++ +C +
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGGYSKNCYANE 481
Query: 324 HVKLAELALEK 334
+ L L LE+
Sbjct: 482 ALSLFNLLLEE 492
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 150/371 (40%), Gaps = 74/371 (19%)
Query: 16 LYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT 75
L + DC+ ++ FDR ++ N +R + +G E A++L + + P T
Sbjct: 44 LRTVSDCV-DSITTFDR----SVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--T 96
Query: 76 FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI- 134
L+ C+ ++++G+ + + N + D +G+ L MY C + A +VFD++
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156
Query: 135 LERDPSEATLVTVISASADIA--------------------------------ALPQGRE 162
+E+ L+ ++ S D + ++ G +
Sbjct: 157 IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216
Query: 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGH 222
LHGF + F V +LV Y K V AR +F+++ E+ V+SWN++I GY +G
Sbjct: 217 LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 276
Query: 223 STKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRM---------------FFES 266
+ K L +F +M ++ D T V V + C+ L GR F +
Sbjct: 277 AEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT 336
Query: 267 MVRDYH---------------IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKPD 308
++ Y D SV YT M+ G EA L +M + PD
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396
Query: 309 PGVWGALLNSC 319
A+LN C
Sbjct: 397 VYTVTAVLNCC 407
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/551 (37%), Positives = 331/551 (60%), Gaps = 47/551 (8%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE-I 67
+ + LV +Y C + + ++FD + R + LWN +I Y+ N + A+ L+ + E
Sbjct: 340 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
GL+ ++ T + AC A IH V++ + D FV L+DMY++ + A
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459
Query: 128 RQVFDKILERD--------------------------------------------PSEAT 143
++F K+ +RD P+ T
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519
Query: 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203
L+T++ + A ++AL +G+E+H ++ ++ +V V +ALVDMYAKCG ++++R +F+Q+
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 204 EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRM 262
+K V++WN +I Y MHG+ +A+DL M + V+P+ +TF+ V +ACS G+ DEG
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 263 FFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKL 321
F M DY ++PS HY C+VDLLG +GR+ EA L+ M R G W +LL + ++
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 322 HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACS 381
H ++++ E+A + LI+LEP+ A +YV+L+NIY+ A W+ ++R+ M ++G++K CS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Query: 382 WIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMI 441
WIE ++ H F++GD+SHP +++ L+ L RM++ GYVP T V H+VE DEK ++
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819
Query: 442 CCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHF 501
C HSE+LAIAFG++NT GT + + KNL++C+DCH+A KFISKI +REI +RDV R+H F
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRF 879
Query: 502 KDGICSCGDYW 512
K+G CSCGDYW
Sbjct: 880 KNGTCSCGDYW 890
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 175/379 (46%), Gaps = 45/379 (11%)
Query: 2 GFGFHPV-LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
G+G V +A LV+LY C +++FDRI +RN WN LI + +E+A+E
Sbjct: 127 GYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA 186
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEE---GRRIHEDVIRNKWETDVFVGAALIDM 117
+ +L+ + P +FT + ACS L E G+++H +R K E + F+ L+ M
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAM 245
Query: 118 YAKCSCVVNARQVFDKILERD---------------------------------PSEATL 144
Y K + +++ + RD P E T+
Sbjct: 246 YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 305
Query: 145 VTVISASADIAALPQGRELHGFSWRH-RFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203
+V+ A + + L G+ELH ++ ++ + N V +ALVDMY C V R +F+ +
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 204 EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACSRGGLFDEGR 261
++++ WNAMI GY+ + H +AL LF M++ + + T GV+ AC R G F
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425
Query: 262 MFFESMV-RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCK 320
+V R D VQ+ ++D+ G++D A + +M + D W ++
Sbjct: 426 AIHGFVVKRGLDRDRFVQN--TLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGYV 482
Query: 321 LHGHVKLAELALEKLIELE 339
H + A L L K+ LE
Sbjct: 483 FSEHHEDALLLLHKMQNLE 501
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 150/333 (45%), Gaps = 50/333 (15%)
Query: 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100
W L+R+ + A+ Y ++ +G+ PDN+ FP LKA + L +E G++IH V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 101 RNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILER---------------------- 137
+ + D V V L+++Y KC +VFD+I ER
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 138 -----------DPSEATLVTVISASADIA---ALPQGRELHGFSWRHRFELNVKVKTALV 183
+PS TLV+V++A +++ L G+++H + R + ELN + LV
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLV 243
Query: 184 DMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHI 242
MY K G + ++ L + +V+WN +++ + +AL+ +M E V+PD
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303
Query: 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH-----SGRLDEAC 297
T VL ACS + G+ +++ +D + + +VD+ + SGR
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGR--RVF 361
Query: 298 DLIMQMRVKPDPGVWGALLNSCKLHGHVKLAEL 330
D + ++ G+W A++ + H K A L
Sbjct: 362 DGMFDRKI----GLWNAMIAGYSQNEHDKEALL 390
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 233/574 (40%), Positives = 315/574 (54%), Gaps = 71/574 (12%)
Query: 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL 65
+PVL KL Y++ + ++ LF + +LFL+ I + NG + A LY +LL
Sbjct: 63 YPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLL 122
Query: 66 EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVV 125
+ P+ FTF LK+CS S G+ IH V++ D +V L+D+YAK VV
Sbjct: 123 SSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVV 178
Query: 126 NARQV-------------------------------FDKILERD---------------- 138
+A++V FD + ERD
Sbjct: 179 SAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGF 238
Query: 139 ------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT 180
P E T+V +SA + I AL GR +H F R LNVKV T
Sbjct: 239 PNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCT 298
Query: 181 ALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK--DEVQ 238
L+DMY+KCG ++ A +F K +V+WNAMI GYAMHG+S AL LF +M+ +Q
Sbjct: 299 GLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQ 358
Query: 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACD 298
P ITF+G L AC+ GL +EG FESM ++Y I P ++HY C+V LLG +G+L A +
Sbjct: 359 PTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYE 418
Query: 299 LIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358
I M + D +W ++L SCKLHG L + E LI L ++G YV+LSNIYA +
Sbjct: 419 TIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGD 478
Query: 359 WEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKE 418
+EGVAK+R LM ++GI K S IE++NK H F +GD H EIY L+ + R+K
Sbjct: 479 YEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKS 538
Query: 419 AGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIA 478
GYVP T +V D+E EK + HSERLAIA+GLI+T G+ L I KNL++C DCH
Sbjct: 539 HGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTV 598
Query: 479 IKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
K ISKIT R+I +RD NR+HHF DG CSCGD+W
Sbjct: 599 TKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Query: 137 RDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVK---VKTALVDMYAKCGLVK 193
R P L +I S + + Q +H RH L+ + + L YA G ++
Sbjct: 25 RLPPPEKLAVLIDKSQSVDEVLQ---IHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIR 81
Query: 194 VARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF-EKMKDEVQPDHITFVGVLSACS 252
+ LF Q + + + A I +++G +A L+ + + E+ P+ TF +L +CS
Sbjct: 82 HSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS 141
Query: 253 RGGLFDEGRMFFESMVR-DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303
G++ +++ IDP V T +VD+ G + A + +M
Sbjct: 142 T----KSGKLIHTHVLKFGLGIDPYVA--TGLVDVYAKGGDVVSAQKVFDRM 187
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/523 (41%), Positives = 318/523 (60%), Gaps = 37/523 (7%)
Query: 26 AHQLFDRIPQRNLFLWNVLIRAYA-WNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84
A LF+ + + ++ ++N + R Y+ + P EV L+ +LE G++PDN+TFP LKAC+
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEV-FSLFVEILEDGILPDNYTFPSLLKACA 140
Query: 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER------- 137
A+EEGR++H ++ + +V+V LI+MY +C V +AR VFD+I+E
Sbjct: 141 VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNA 200
Query: 138 --------------------------DPSEATLVTVISASADIAALPQGRELHGFSWRHR 171
P+E TL++V+S+ A + +L G+ +H ++ +H
Sbjct: 201 MITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHS 260
Query: 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFE 231
F VKV TAL+DM+AKCG + A ++FE++R K +W+AMI YA HG + K++ +FE
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFE 320
Query: 232 KMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290
+M+ E VQPD ITF+G+L+ACS G +EGR +F MV + I PS++HY MVDLL +
Sbjct: 321 RMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRA 380
Query: 291 GRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350
G L++A + I ++ + P P +W LL +C H ++ LAE E++ EL+ G+YVILS
Sbjct: 381 GNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILS 440
Query: 351 NIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLK 410
N+YAR WE V LRK+M DR K CS IEV N H F SGD +++ L
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500
Query: 411 WLEGRMKEAGYVPGTESVFHDVEND-EKANMICCHSERLAIAFGLINTPDGTRLLITKNL 469
+ +K +GYVP T V H ND EK + HSE+LAI FGL+NTP GT + + KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560
Query: 470 KICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
++C DCH A K IS I R++ +RDV R+HHF+DG CSCGD+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/541 (39%), Positives = 312/541 (57%), Gaps = 35/541 (6%)
Query: 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL 65
+ V+ L+ AC + +A QLF R +++ W +I+ A NG + AIE + +
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMK 262
Query: 66 EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVV 125
GL D + F L AC L AI EG++IH +IR ++ ++VG+ALIDMY KC C+
Sbjct: 263 VQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLH 322
Query: 126 NARQVFDKILER---------------------------------DPSEATLVTVISASA 152
A+ VFD++ ++ DP TL ISA A
Sbjct: 323 YAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Query: 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212
++++L +G + HG + V V +LV +Y KCG + + LF ++ + VSW A
Sbjct: 383 NVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTA 442
Query: 213 MITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDY 271
M++ YA G + + + LF+KM + ++PD +T GV+SACSR GL ++G+ +F+ M +Y
Sbjct: 443 MVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEY 502
Query: 272 HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELA 331
I PS+ HY+CM+DL SGRL+EA I M PD W LL++C+ G++++ + A
Sbjct: 503 GIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWA 562
Query: 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHA 391
E LIEL+PH Y +LS+IYA W+ VA+LR+ M ++ +KK SWI+ K K H+
Sbjct: 563 AESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHS 622
Query: 392 FLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIA 451
F + D S P D+IYAKL+ L ++ + GY P T V HDVE K M+ HSERLAIA
Sbjct: 623 FSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIA 682
Query: 452 FGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDY 511
FGLI P G + + KNL++C DCH A K IS +T REI VRD R+H FKDG CSCGD+
Sbjct: 683 FGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDF 742
Query: 512 W 512
W
Sbjct: 743 W 743
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 16/317 (5%)
Query: 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYY 62
F H + + L+ +Y C CLH A +FDR+ Q+N+ W ++ Y G E A++++
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360
Query: 63 RLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
+ G+ PD++T A+ AC+ +S++EEG + H I + V V +L+ +Y KC
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCG 420
Query: 123 CVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL 182
+ ++ ++F+++ RD T ++SA A + +L +H + + T +
Sbjct: 421 DIDDSTRLFNEMNVRDAVSWT--AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGV 478
Query: 183 VDMYAKCGLVKVARNLFEQLREK-----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237
+ ++ GLV+ + F+ + + + ++ MI ++ G +A+ M
Sbjct: 479 ISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM--PF 536
Query: 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEA 296
PD I + +LSAC G + G+ ES++ +DP YT + + G+ D
Sbjct: 537 PPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYASKGKWDSV 593
Query: 297 CDLIMQMR---VKPDPG 310
L MR VK +PG
Sbjct: 594 AQLRRGMREKNVKKEPG 610
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 143/342 (41%), Gaps = 73/342 (21%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL-EIGLVP 71
L+ YS + F+++P R+ WNVLI Y+ +G A++ Y ++ +
Sbjct: 78 LLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANL 137
Query: 72 DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVF 131
T LK S+ + G++IH VI+ +E+ + VG+ L+ MYA C+ +A++VF
Sbjct: 138 TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVF 197
Query: 132 DKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191
+ +R N + +L+ CG+
Sbjct: 198 YGLDDR-------------------------------------NTVMYNSLMGGLLACGM 220
Query: 192 VKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSA 250
++ A LF + EK VSW AMI G A +G + +A++ F +MK + ++ D F VL A
Sbjct: 221 IEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPA 279
Query: 251 CSRGGLFDEGRMFFESMVR------------------------------DYHIDPSVQHY 280
C G +EG+ ++R D +V +
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339
Query: 281 TCMVDLLGHSGRLDEACDLIMQMR---VKPDPGVWGALLNSC 319
T MV G +GR +EA + + M+ + PD G +++C
Sbjct: 340 TAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 112/248 (45%), Gaps = 20/248 (8%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G + ++ LV LY C + ++ +LF+ + R+ W ++ AYA G I+L+
Sbjct: 401 GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLF 460
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVG--AALIDMYA 119
++++ GL PD T + ACS +E+G+R + ++ +++ +G + +ID+++
Sbjct: 461 DKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFK-LMTSEYGIVPSIGHYSCMIDLFS 519
Query: 120 KCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELN---V 176
+ + A + F + P T++SA + L G+ ++ EL+
Sbjct: 520 RSGRLEEAMR-FINGMPFPPDAIGWTTLLSACRNKGNLEIGK----WAAESLIELDPHHP 574
Query: 177 KVKTALVDMYAKCGLVKVARNLFEQLREKRV--------VSWNAMITGYAMHGHSTKALD 228
T L +YA G L +REK V + W + ++ S+ LD
Sbjct: 575 AGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLD 634
Query: 229 -LFEKMKD 235
++ K+++
Sbjct: 635 QIYAKLEE 642
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/546 (39%), Positives = 314/546 (57%), Gaps = 35/546 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF + +++ YS D + LFD +P+ + +NV+I +Y+ YE ++ +
Sbjct: 280 GFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFF 339
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ +G NF F L + LS+++ GR++H + ++ + VG +L+DMYAKC
Sbjct: 340 REMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC 399
Query: 122 SCVVNARQVFDKILERDP---------------------------------SEATLVTVI 148
A +F + +R ++T TV+
Sbjct: 400 EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL 459
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
ASA A+L G++LH F R NV + LVDMYAKCG +K A +FE++ ++ V
Sbjct: 460 KASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAV 519
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
SWNA+I+ +A +G A+ F KM + +QPD ++ +GVL+ACS G ++G +F++M
Sbjct: 520 SWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAM 579
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
Y I P +HY CM+DLLG +GR EA L+ +M +PD +W ++LN+C++H + L
Sbjct: 580 SPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSL 639
Query: 328 AELALEKLIELEP-HDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK 386
AE A EKL +E DA YV +SNIYA A WE V ++K M +RGIKK A SW+EV
Sbjct: 640 AERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVN 699
Query: 387 NKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446
+K H F S D +HPN DEI K+ L ++ GY P T SV DV+ K + HSE
Sbjct: 700 HKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSE 759
Query: 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGIC 506
RLA+AF LI+TP+G +++ KNL+ C DCH AIK ISKI +REITVRD +R+HHF +G+C
Sbjct: 760 RLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVC 819
Query: 507 SCGDYW 512
SCGDYW
Sbjct: 820 SCGDYW 825
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 181/380 (47%), Gaps = 44/380 (11%)
Query: 1 MGFGFHPVLATKLVHLYSACDC--LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAI 58
+GF +P L V L S C+ L A LF+ IP+++ +N LI Y +G Y +I
Sbjct: 176 LGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESI 235
Query: 59 ELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118
L+ ++ + G P +FTF LKA L G+++H + + D VG ++D Y
Sbjct: 236 HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295
Query: 119 AKCSCVVNARQVFDKILE---------------RDPSEATL------------------V 145
+K V+ R +FD++ E D EA+L
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
T++S +A++++L GR+LH + + + V +LVDMYAKC + + A +F+ L ++
Sbjct: 356 TMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR 415
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFF 264
VSW A+I+GY G L LF KM+ ++ D TF VL A + G+
Sbjct: 416 TTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH 475
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGV--WGALLNSCKLH 322
++R +++ +V + +VD+ G + +A + +M PD W AL+++ +
Sbjct: 476 AFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEM---PDRNAVSWNALISAHADN 531
Query: 323 GHVKLAELALEKLIE--LEP 340
G + A A K+IE L+P
Sbjct: 532 GDGEAAIGAFAKMIESGLQP 551
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 37/249 (14%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG--LVPDNFTFPFAL 80
+ +A LFD +P R + W +L+ YA N ++ A +L+ ++ +PD+ TF L
Sbjct: 95 VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154
Query: 81 KACSALSAIEEGRRIHEDVIRNKWETDVF--VGAALIDMYAKCSCVVNARQVFDKILERD 138
C+ ++H ++ ++T+ F V L+ Y + + A +F++I E+D
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214
Query: 139 ---------------------------------PSEATLVTVISASADIAALPQGRELHG 165
PS+ T V+ A + G++LH
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274
Query: 166 FSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTK 225
S F + V ++D Y+K V R LF+++ E VS+N +I+ Y+
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334
Query: 226 ALDLFEKMK 234
+L F +M+
Sbjct: 335 SLHFFREMQ 343
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 50/234 (21%)
Query: 26 AHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85
A +++D +P +N N +I + G A +L+ +PD + +
Sbjct: 67 ARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLF------DAMPDRTVVTWTI----- 115
Query: 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----PSE 141
L+ YA+ S A ++F ++ P
Sbjct: 116 ----------------------------LMGWYARNSHFDEAFKLFRQMCRSSSCTLPDH 147
Query: 142 ATLVTVISASADIAALPQGR--ELHGFSWRHRFELN--VKVKTALVDMYAKCGLVKVARN 197
T T++ D A+PQ ++H F+ + F+ N + V L+ Y + + +A
Sbjct: 148 VTFTTLLPGCND--AVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACV 205
Query: 198 LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV-QPDHITFVGVLSA 250
LFE++ EK V++N +ITGY G T+++ LF KM+ QP TF GVL A
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 40/165 (24%)
Query: 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISA 150
+ RR+ +I+ ++TD +++ + V AR+V+D++ P + T+ T
Sbjct: 31 DTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEM----PHKNTVST---- 82
Query: 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSW 210
++ + K G V AR+LF+ + ++ VV+W
Sbjct: 83 -----------------------------NTMISGHVKTGDVSSARDLFDAMPDRTVVTW 113
Query: 211 NAMITGYAMHGHSTKALDLFEKM---KDEVQPDHITFVGVLSACS 252
++ YA + H +A LF +M PDH+TF +L C+
Sbjct: 114 TILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 137 RDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196
R PS AT + A I + F+ + +V+ + G V AR
Sbjct: 22 RQPSPATFLDTRRVDARII-------------KTGFDTDTCRSNFIVEDLLRRGQVSAAR 68
Query: 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256
+++++ K VS N MI+G+ G + A DLF+ M D +T+ ++ +R
Sbjct: 69 KVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTV---VTWTILMGWYARNSH 125
Query: 257 FDEGRMFFESMVR 269
FDE F M R
Sbjct: 126 FDEAFKLFRQMCR 138
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/539 (40%), Positives = 314/539 (58%), Gaps = 52/539 (9%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD 72
++ Y+ + A QLFD P +++F W ++ Y N E A EL+ ++ E V
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSW 315
Query: 73 NFTFPFALKACSALSAIEEGRRIHE-----DVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
N + L+ +G R+ DV+ + +V +I YA+C + A
Sbjct: 316 N----------AMLAGYVQGERMEMAKELFDVMPCR---NVSTWNTMITGYAQCGKISEA 362
Query: 128 RQVFDKILERDP---------------------------------SEATLVTVISASADI 154
+ +FDK+ +RDP + ++ + +S AD+
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI 214
AL G++LHG + +E V AL+ MY KCG ++ A +LF+++ K +VSWN MI
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 482
Query: 215 TGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273
GY+ HG AL FE MK E ++PD T V VLSACS GL D+GR +F +M +DY +
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGV 542
Query: 274 DPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALE 333
P+ QHY CMVDLLG +G L++A +L+ M +PD +WG LL + ++HG+ +LAE A +
Sbjct: 543 MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAAD 602
Query: 334 KLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFL 393
K+ +EP ++G YV+LSN+YA + W V KLR M D+G+KK SWIE++NK H F
Sbjct: 603 KIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFS 662
Query: 394 SGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFG 453
GD HP DEI+A L+ L+ RMK+AGYV T V HDVE +EK M+ HSERLA+A+G
Sbjct: 663 VGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYG 722
Query: 454 LINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
++ G + + KNL++C+DCH AIK++++IT R I +RD NR+HHFKDG CSCGDYW
Sbjct: 723 IMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 165/369 (44%), Gaps = 52/369 (14%)
Query: 17 YSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF 76
Y+ C+ +A +FDR+P++N WN L+ AY N E A L+ LV N
Sbjct: 167 YAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 226
Query: 77 PFALKACSALSAIEEGRRIHEDV-IRN--KWET------------------------DVF 109
+K I E R+ + + +R+ W T DVF
Sbjct: 227 GGFVKK----KKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282
Query: 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWR 169
A++ Y + V AR++FDK+ ER+ +S +A +A QG + +
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPERNE--------VSWNAMLAGYVQGERME--MAK 332
Query: 170 HRFEL----NVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTK 225
F++ NV ++ YA+CG + A+NLF+++ ++ VSW AMI GY+ GHS +
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFE 392
Query: 226 ALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVR-DYHIDPSVQHYTCM 283
AL LF +M+ E + + +F LS C+ + G+ +V+ Y V + +
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN--AL 450
Query: 284 VDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE--LEPH 341
+ + G ++EA DL +M K D W ++ HG ++A E + L+P
Sbjct: 451 LLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPD 509
Query: 342 DAGNYVILS 350
DA +LS
Sbjct: 510 DATMVAVLS 518
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 148/328 (45%), Gaps = 46/328 (14%)
Query: 24 HNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83
+ A ++F R+P+ + +N +I Y NG +E+A +L+ + E LV N +K
Sbjct: 81 NEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVM----IKGY 136
Query: 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-DPSEA 142
+ + R + E + E DV ++ YA+ CV +AR VFD++ E+ D S
Sbjct: 137 VRNRNLGKARELFEIMP----ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWN 192
Query: 143 TLVTVI---SASADIAALPQGRE----------LHGFSWRHRF--------ELNVK---V 178
L++ S + L + RE L GF + + +NV+
Sbjct: 193 ALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS 252
Query: 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238
++ YA+ G + AR LF++ + V +W AM++GY + +A +LF+KM +
Sbjct: 253 WNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER-- 310
Query: 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEA 296
+ +++ +L+ +G + + F+ M P +V + M+ G++ EA
Sbjct: 311 -NEVSWNAMLAGYVQGERMEMAKELFDVM-------PCRNVSTWNTMITGYAQCGKISEA 362
Query: 297 CDLIMQMRVKPDPGVWGALLNSCKLHGH 324
+L +M K DP W A++ GH
Sbjct: 363 KNLFDKM-PKRDPVSWAAMIAGYSQSGH 389
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 180 TALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239
++ Y + G ++AR LF+++ E+ +VSWN MI GY + + KA +LFE M +
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER--- 155
Query: 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDL 299
D ++ +LS ++ G D+ R F+ M + + ++ + +++EAC +
Sbjct: 156 DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVS-----WNALLSAYVQNSKMEEAC-M 209
Query: 300 IMQMRVKPDPGVWGALLNSCKLHGHVK 326
+ + R W + +C L G VK
Sbjct: 210 LFKSREN-----WALVSWNCLLGGFVK 231
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 175 NVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234
++K + Y + G A +F+++ VS+N MI+GY +G A LF++M
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP 122
Query: 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294
+ D +++ ++ R + R FE M + V + M+ +G +D
Sbjct: 123 ER---DLVSWNVMIKGYVRNRNLGKARELFEIMP-----ERDVCSWNTMLSGYAQNGCVD 174
Query: 295 EACDLIMQMRVKPDPGVWGALLNS 318
+A + +M K D W ALL++
Sbjct: 175 DARSVFDRMPEKNDVS-WNALLSA 197
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/545 (38%), Positives = 321/545 (58%), Gaps = 38/545 (6%)
Query: 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLF---LWNVLIRAYAWNGPYEVAIELYY 62
+P L +KL+ L+S C L A ++FD + +L +W + Y+ NG A+ +Y
Sbjct: 166 NPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYV 225
Query: 63 RLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
+L + P NF+ ALKAC L + GR IH +++ K + D V L+ +Y +
Sbjct: 226 DMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESG 285
Query: 123 CVVNARQVFDKILERDP---------------------------------SEATLVTVIS 149
+AR+VFD + ER+ S ATL T++
Sbjct: 286 LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 345
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209
A + +AAL G+E+H + + + +V + +L+DMY KCG V+ +R +F+ + K + S
Sbjct: 346 ACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS 405
Query: 210 WNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
WN M+ YA++G+ + ++LFE M + V PD ITFV +LS CS GL + G FE M
Sbjct: 406 WNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMK 465
Query: 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328
++ + P+++HY C+VD+LG +G++ EA +I M KP +WG+LLNSC+LHG+V +
Sbjct: 466 TEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVG 525
Query: 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNK 388
E+A ++L LEPH+ GNYV++SNIYA A W+ V K+R++M RG+KK CSW++VK+K
Sbjct: 526 EIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDK 585
Query: 389 AHAFLSGDA-SHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
F++G N DE L+ ++++GY P T V HDV+ + KAN +C HSER
Sbjct: 586 IQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSER 645
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LA + LI+T +G + ITKNL++C DCH +K +S++T R I +RD R+HHF DGICS
Sbjct: 646 LATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICS 705
Query: 508 CGDYW 512
C DYW
Sbjct: 706 CKDYW 710
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/545 (39%), Positives = 316/545 (57%), Gaps = 34/545 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF T L+ +YS L++AH+LFD IP R++ W L Y +G + AI+L+
Sbjct: 141 GFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLF 200
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+++E+G+ PD++ L AC + ++ G I + + + + + FV L+++YAKC
Sbjct: 201 KKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKC 260
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
+ AR VFD ++E+D P + ++V +
Sbjct: 261 GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFL 320
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
S+ A + AL G RH F N+ + AL+DMYAKCG + +F++++EK +V
Sbjct: 321 SSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIV 380
Query: 209 SWNAMITGYAMHGHSTKALDLF-EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
NA I+G A +GH + +F + K + PD TF+G+L C GL +G FF ++
Sbjct: 381 IMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAI 440
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
Y + +V+HY CMVDL G +G LD+A LI M ++P+ VWGALL+ C+L +L
Sbjct: 441 SCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQL 500
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
AE L++LI LEP +AGNYV LSNIY+ W+ A++R +M +G+KK SWIE++
Sbjct: 501 AETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEG 560
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K H FL+ D SHP D+IYAKL+ L M+ G+VP TE VF DVE +EK ++ HSE+
Sbjct: 561 KVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEK 620
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LA+A GLI+T G + + KNL++C DCH +K ISKIT REI VRD NR+H F +G CS
Sbjct: 621 LAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCS 680
Query: 508 CGDYW 512
C DYW
Sbjct: 681 CNDYW 685
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 163/337 (48%), Gaps = 36/337 (10%)
Query: 26 AHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85
++ LF N+FL+N LI + N + ++L+ + + GL FTFP LKAC+
Sbjct: 64 SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123
Query: 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD------- 138
S+ + G +H V++ + DV +L+ +Y+ + +A ++FD+I +R
Sbjct: 124 ASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTAL 183
Query: 139 --------------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRF 172
P +V V+SA + L G + +
Sbjct: 184 FSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEM 243
Query: 173 ELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232
+ N V+T LV++YAKCG ++ AR++F+ + EK +V+W+ MI GYA + + ++LF +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303
Query: 233 M-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG 291
M ++ ++PD + VG LS+C+ G D G S++ + ++ ++D+ G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 292 RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328
+ ++ +M+ K D + A ++ +GHVKL+
Sbjct: 363 AMARGFEVFKEMKEK-DIVIMNAAISGLAKNGHVKLS 398
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/521 (39%), Positives = 306/521 (58%), Gaps = 12/521 (2%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G + LV +Y C L A + D + +R++ WN L+ YA N ++ A+E+
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ + + D T L A S + E +D+ + + +I +Y K
Sbjct: 229 CREMESVKISHDAGTMASLLPAVS--NTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286
Query: 121 CSCVVNARQVFDKILERD---PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVK 177
+ V A +++ + +E D P ++ +V+ A D +AL G+++HG+ R + N+
Sbjct: 287 NAMPVEAVELYSR-MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345
Query: 178 VKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE- 236
++ AL+DMYAKCG ++ AR++FE ++ + VVSW AMI+ Y G A+ LF K++D
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405
Query: 237 VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296
+ PD I FV L+ACS GL +EGR F+ M Y I P ++H CMVDLLG +G++ EA
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465
Query: 297 CDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARA 356
I M ++P+ VWGALL +C++H + LA +KL +L P +G YV+LSNIYA+A
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525
Query: 357 ANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRM 416
WE V +R +M +G+KK+ S +EV H FL GD SHP DEIY +L L +M
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKM 585
Query: 417 KEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPD-----GTRLLITKNLKI 471
KE GYVP +ES HDVE ++K + HSE+LAI F L+NT + + ITKNL+I
Sbjct: 586 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRI 645
Query: 472 CDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
C DCH+A K IS+IT REI +RD NR+H F+ G+CSCGDYW
Sbjct: 646 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 160/318 (50%), Gaps = 7/318 (2%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
L KL+ Y++ + +A ++FD IP+RN+ + NV+IR+Y NG Y ++++ +
Sbjct: 76 LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128
+ PD++TFP LKACS I GR+IH + + +FVG L+ MY KC + AR
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195
Query: 129 QVFDKILERD-PSEATLVTVISASADI-AALPQGRELHGFSWRHRFELNVKVKTALVDMY 186
V D++ RD S +LV + + AL RE+ H + A+ +
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255
Query: 187 AKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFV 245
+ V +++F ++ +K +VSWN MI Y + +A++L+ +M+ D +PD ++
Sbjct: 256 TEN--VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSIT 313
Query: 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRV 305
VL AC G+ + R I P++ ++D+ G L++A D+ M+
Sbjct: 314 SVLPACGDTSALSLGKKIHGYIERKKLI-PNLLLENALIDMYAKCGCLEKARDVFENMKS 372
Query: 306 KPDPGVWGALLNSCKLHG 323
+ D W A++++ G
Sbjct: 373 R-DVVSWTAMISAYGFSG 389
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 18/254 (7%)
Query: 136 ERDPSEATLV--TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193
++ P E + V+ DI L R +H N + L+ YA V
Sbjct: 35 QKSPQETVFLLGQVLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVA 91
Query: 194 VARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACS 252
AR +F+++ E+ V+ N MI Y +G + + +F M V+PDH TF VL ACS
Sbjct: 92 SARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACS 151
Query: 253 RGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVW 312
G GR S + + ++ +V + G G L EA L++ + D W
Sbjct: 152 CSGTIVIGRKIHGSATK-VGLSSTLFVGNGLVSMYGKCGFLSEA-RLVLDEMSRRDVVSW 209
Query: 313 GALLNSCKLHGHVKLAELALEKLIELE----PHDAGNYVILSNIYARAANWEGVAKLRKL 368
+L+ + + + ALE E+E HDAG L + E V ++ +
Sbjct: 210 NSLVVG---YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTT-ENVMYVKDM 265
Query: 369 MIDRGIKKSIACSW 382
G KKS+ SW
Sbjct: 266 FFKMG-KKSLV-SW 277
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/554 (38%), Positives = 329/554 (59%), Gaps = 50/554 (9%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWN-GPYEVAIELYYRLLEI 67
L K++ L S+ ++ A ++FD I + F+WN LIRA A + E A LY ++LE
Sbjct: 85 LYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLER 144
Query: 68 G-LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
G PD TFPF LKAC+ + EG+++H ++++ + DV+V LI +Y C C+
Sbjct: 145 GESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDL 204
Query: 127 ARQVFDKILER--------------------------------DPSEATLVTVISASADI 154
AR+VFD++ ER +P T+ +V+SA A +
Sbjct: 205 ARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGL 264
Query: 155 AALPQGRELHGFSWRH---RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWN 211
+L G H F R ++V VK +L++MY KCG +++A +F+ ++++ + SWN
Sbjct: 265 GSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 324
Query: 212 AMITGYAMHGHSTKALDLFEKMKDE---VQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
AMI G+A HG + +A++ F++M D+ V+P+ +TFVG+L AC+ G ++GR +F+ MV
Sbjct: 325 AMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMV 384
Query: 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNS-CKLHGHVKL 327
RDY I+P+++HY C+VDL+ +G + EA D++M M +KPD +W +LL++ CK V+L
Sbjct: 385 RDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 444
Query: 328 AELALEKLIELEPHD-------AGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIAC 380
+E +I + + +G YV+LS +YA A+ W V +RKLM + GI+K C
Sbjct: 445 SEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGC 504
Query: 381 SWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPG-TESVFHDVEND-EKA 438
S IE+ +H F +GD SHP +IY +LK ++ R++ GY+P +++ D ND K
Sbjct: 505 SSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKE 564
Query: 439 NMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRY 498
+ HSERLAIAFGLIN P T + I KNL++C+DCH K ISK+ EI VRD R+
Sbjct: 565 YSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRF 624
Query: 499 HHFKDGICSCGDYW 512
HHFKDG CSC DYW
Sbjct: 625 HHFKDGSCSCLDYW 638
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/578 (37%), Positives = 316/578 (54%), Gaps = 73/578 (12%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIP----QRNLFLWNVLIRAYAWNGPYEVAIELYYR 63
V + L+ Y+ CL ++ + + N+ WN ++ + +G ++ A+ ++ +
Sbjct: 183 VTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQK 242
Query: 64 LLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123
+ +G PD T L + + GR IH VI+ D V +A+IDMY K
Sbjct: 243 IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGH 302
Query: 124 VVNARQVF------------------------DKILE------RDPSEATLV---TVISA 150
V +F DK LE E +V ++I+
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362
Query: 151 SA----DIAALPQGREL-------------------------------HGFSWRHRFELN 175
A DI AL RE+ HGF+ R N
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422
Query: 176 VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK-MK 234
V V +AL+DMYAKCG + +++ +F + K +V WN+++ G++MHG + + + +FE M+
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482
Query: 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294
++PD I+F +LSAC + GL DEG +F+ M +Y I P ++HY+CMV+LLG +G+L
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542
Query: 295 EACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354
EA DLI +M +PD VWGALLNSC+L +V LAE+A EKL LEP + G YV+LSNIYA
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYA 602
Query: 355 RAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEG 414
W V +R M G+KK+ CSWI+VKN+ + L+GD SHP D+I K+ +
Sbjct: 603 AKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISK 662
Query: 415 RMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDD 474
M+++G+ P + HDVE E+ M+ HSE+LA+ FGL+NTPDGT L + KNL+IC D
Sbjct: 663 EMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGD 722
Query: 475 CHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
CH IKFIS REI +RD NR+HHFKDGICSCGD+W
Sbjct: 723 CHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/473 (22%), Positives = 184/473 (38%), Gaps = 108/473 (22%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
++ KL+ YS +C ++A + IP ++ ++ LI A + +I ++ R+ G
Sbjct: 52 ISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHG 111
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIH-------------------------------E 97
L+PD+ P K C+ LSA + G++IH
Sbjct: 112 LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDAR 171
Query: 98 DVIRNKWETDVFVGAALIDMYAKCSCVVNARQV--------------------------- 130
V + DV +AL+ YA+ C+ ++
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231
Query: 131 --------FDKI--LERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT 180
F KI L P + T+ +V+ + D L GR +HG+ + + V +
Sbjct: 232 YHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVIS 291
Query: 181 ALVDMYAKC-------------------------------GLVKVARNLFEQLREK---- 205
A++DMY K GLV A +FE +E+
Sbjct: 292 AMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMEL 351
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFF 264
VVSW ++I G A +G +AL+LF +M+ V+P+H+T +L AC GR
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
VR + +D +V + ++D+ GR++ + ++ M + W +L+N +HG
Sbjct: 412 GFAVRVHLLD-NVHVGSALIDMYAKCGRINLS-QIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 325 VKLAELALEKLI--ELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375
K E L+ L+P +LS EG + + + GIK
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIK 522
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/541 (39%), Positives = 298/541 (55%), Gaps = 37/541 (6%)
Query: 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL 65
H + T + LYS C + LF + ++ +N +I Y NG E+++ L+ L+
Sbjct: 255 HDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM 314
Query: 66 EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVV 125
G + T + L I IH +++ + + V AL +Y+K + +
Sbjct: 315 LSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371
Query: 126 NARQVFDKILERD---------------------------------PSEATLVTVISASA 152
+AR++FD+ E+ P+ T+ ++SA A
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA 431
Query: 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212
+ AL G+ +H FE ++ V TAL+ MYAKCG + AR LF+ + +K V+WN
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 213 MITGYAMHGHSTKALDLF-EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDY 271
MI+GY +HG +AL++F E + + P +TF+ VL ACS GL EG F SM+ Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 272 HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELA 331
+PSV+HY CMVD+LG +G L A I M ++P VW LL +C++H LA
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHA 391
EKL EL+P + G +V+LSNI++ N+ A +R+ R + K+ + IE+ H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 392 FLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIA 451
F SGD SHP EIY KL+ LEG+M+EAGY P TE HDVE +E+ M+ HSERLAIA
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 452 FGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDY 511
FGLI T GT + I KNL++C DCH K ISKITER I VRD NR+HHFKDG+CSCGDY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 512 W 512
W
Sbjct: 792 W 792
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 40/352 (11%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL-E 66
+L + +V +Y + +A ++FDR+P+++ LWN +I Y N Y +I+++ L+ E
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214
Query: 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
D T L A + L + G +IH + + +V I +Y+KC +
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKM 274
Query: 127 ARQVFDKILERDP---------------------------------SEATLVTVISASAD 153
+F + + D +TLV+++ S
Sbjct: 275 GSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH 334
Query: 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM 213
+ + +HG+ + F + V TAL +Y+K ++ AR LF++ EK + SWNAM
Sbjct: 335 LMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391
Query: 214 ITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272
I+GY +G + A+ LF +M K E P+ +T +LSAC++ G G+ + +VR
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK-WVHDLVRSTD 450
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
+ S+ T ++ + G + EA L + K + W +++ LHG
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRL-FDLMTKKNEVTWNTMISGYGLHGQ 501
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 35/267 (13%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF L TKL S ++ A +F + + ++FL+NVL+R ++ N ++ ++
Sbjct: 47 GFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVF 106
Query: 62 YRLLE-IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
L + L P++ T+ FA+ A S GR IH + + ++++ +G+ ++ MY K
Sbjct: 107 AHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFK 166
Query: 121 CSCVVNARQVFDKILERDP----------------------------------SEATLVT 146
V +AR+VFD++ E+D TL+
Sbjct: 167 FWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLD 226
Query: 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
++ A A++ L G ++H + + + V T + +Y+KCG +K+ LF + R+
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKM 233
+V++NAMI GY +G + +L LF+++
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKEL 313
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 11/250 (4%)
Query: 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVF---DKILERDPS 140
S L AI R I V R DVF+ L+ ++ ++ VF K + P+
Sbjct: 63 SDLGAIYYARDIFLSVQR----PDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPN 118
Query: 141 EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFE 200
+T ISA++ GR +HG + + + + + +V MY K V+ AR +F+
Sbjct: 119 SSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFD 178
Query: 201 QLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACSRGGLFD 258
++ EK + WN MI+GY + +++ +F + +E + D T + +L A +
Sbjct: 179 RMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELR 238
Query: 259 EGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNS 318
G M S+ T + L G++ L + R KPD + A+++
Sbjct: 239 LG-MQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHG 296
Query: 319 CKLHGHVKLA 328
+G +L+
Sbjct: 297 YTSNGETELS 306
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/549 (38%), Positives = 320/549 (58%), Gaps = 39/549 (7%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G+G L TKL+ L + + H LF +P + FL+N +I++ + + Y
Sbjct: 36 GYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYY 95
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
R+L + P N+TF +K+C+ LSA+ G+ +H + + + D +V AAL+ Y+KC
Sbjct: 96 RRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKC 155
Query: 122 SCVVNARQVFDKILER---------------------------------DPSEATLVTVI 148
+ ARQVFD++ E+ +P AT V+++
Sbjct: 156 GDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLL 215
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SA A A+ G +H + +LNVK+ TAL+++Y++CG V AR +F++++E V
Sbjct: 216 SACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVA 275
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQP--DHITFVGVLSACSRGGLFDEGRMFFES 266
+W AMI+ Y HG+ +A++LF KM+D+ P +++TFV VLSAC+ GL +EGR ++
Sbjct: 276 AWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKR 335
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVK---PDPGVWGALLNSCKLHG 323
M + Y + P V+H+ CMVD+LG +G LDEA I Q+ P +W A+L +CK+H
Sbjct: 336 MTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHR 395
Query: 324 HVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWI 383
+ L ++LI LEP + G++V+LSNIYA + + V+ +R M+ ++K + S I
Sbjct: 396 NYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVI 455
Query: 384 EVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICC 443
EV+NK + F GD SH EIY L+ L R KE GY P +E V H VE +EK +
Sbjct: 456 EVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRY 515
Query: 444 HSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKD 503
HSE+LA+AFGL+ T D + I KNL+IC+DCH A K+IS ++ R+ITVRD R+HHF++
Sbjct: 516 HSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQN 574
Query: 504 GICSCGDYW 512
G CSC DYW
Sbjct: 575 GSCSCLDYW 583
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/545 (39%), Positives = 321/545 (58%), Gaps = 35/545 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G P++A L++ YS ++ + F+ PQ++ W+ +I +A N +++E
Sbjct: 45 GLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFL 104
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+++ L PD+ P A K+C+ LS + GR +H ++ ++ DVFVG++L+DMYAKC
Sbjct: 105 KKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKC 164
Query: 122 SCVVNARQVFDKILERDP---------------------------------SEATLVTVI 148
+V AR++FD++ +R+ ++ + +VI
Sbjct: 165 GEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVI 224
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
S A+ L GR++HG S + F+ + V ++LV +Y+KCG+ + A +F ++ K +
Sbjct: 225 SVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLG 284
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267
WNAM+ YA H H+ K ++LF++MK ++P+ ITF+ VL+ACS GL DEGR +F+ M
Sbjct: 285 IWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM 344
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
++ I+P+ +HY +VD+LG +GRL EA ++I M + P VWGALL SC +H + +L
Sbjct: 345 -KESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTEL 403
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
A A +K+ EL P +G ++ LSN YA +E AK RKL+ DRG KK SW+E +N
Sbjct: 404 AAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERN 463
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K H F +G+ H EIY KL L M++AGY+ T V +V+ DEK I HSER
Sbjct: 464 KVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSER 523
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFGLI P + + KNL++C DCH AIKF+S T R I VRD NR+H F+DG CS
Sbjct: 524 LAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCS 583
Query: 508 CGDYW 512
C DYW
Sbjct: 584 CNDYW 588
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 14/184 (7%)
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209
+SA + +G +LHG+ + L V L++ Y+K L +R FE +K +
Sbjct: 24 SSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTT 83
Query: 210 WNAMITGYAMHGHSTKALDLFEK-MKDEVQPDHITFVGVLSACSRGGLFDEGR-MFFESM 267
W+++I+ +A + +L+ +K M ++PD +C+ D GR + SM
Sbjct: 84 WSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSM 143
Query: 268 VRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGV--WGALLNSCKLHGHV 325
Y D V + +VD+ G + A + +M P V W + ++G+
Sbjct: 144 KTGYDADVFVG--SSLVDMYAKCGEIVYARKMFDEM---PQRNVVTWSGM-----MYGYA 193
Query: 326 KLAE 329
++ E
Sbjct: 194 QMGE 197
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/577 (36%), Positives = 326/577 (56%), Gaps = 68/577 (11%)
Query: 4 GFHP--VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF P V+ +L+ +Y+ C L +A ++FD +P R+L WNV++ YA G E A +L+
Sbjct: 115 GFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLF 174
Query: 62 YRLLE----------IGLV----------------------PDNFTFPFALKACSALSAI 89
+ E G V P+ FT A+ A +A+ I
Sbjct: 175 DEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCI 234
Query: 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----------- 138
G+ IH ++R ++D + ++L+DMY KC C+ AR +FDKI+E+D
Sbjct: 235 RRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRY 294
Query: 139 ----------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNV 176
P+E T V++A AD+ G+++HG+ R F+
Sbjct: 295 FKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYS 354
Query: 177 KVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM-KD 235
++LVDMY KCG ++ A+++ + + +VSW ++I G A +G +AL F+ + K
Sbjct: 355 FASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKS 414
Query: 236 EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDE 295
+PDH+TFV VLSAC+ GL ++G FF S+ + + + HYTC+VDLL SGR ++
Sbjct: 415 GTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQ 474
Query: 296 ACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355
+I +M +KP +W ++L C +G++ LAE A ++L ++EP + YV ++NIYA
Sbjct: 475 LKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAA 534
Query: 356 AANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGR 415
A WE K+RK M + G+ K SW E+K K H F++ D SHP ++I L+ L +
Sbjct: 535 AGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKK 594
Query: 416 MKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDC 475
MKE GYVP T V HDVE+++K + HSE+LA+AF +++T +GT + + KNL+ C DC
Sbjct: 595 MKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDC 654
Query: 476 HIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
H AIKFIS IT+R+ITVRD R+H F++G CSCGDYW
Sbjct: 655 HGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 135/301 (44%), Gaps = 44/301 (14%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G VL + L+ +Y C C+ A +FD+I ++++ W +I Y + + L+
Sbjct: 248 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLF 307
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
L+ P+ +TF L AC+ L+ E G+++H + R ++ F ++L+DMY KC
Sbjct: 308 SELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKC 367
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
+ +A+ V D + D P T V V+
Sbjct: 368 GNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVL 427
Query: 149 SASADIAALPQGRE-LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK-R 206
SA + +G E + + +HR T LVD+ A+ G + +++ ++ K
Sbjct: 428 SACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPS 487
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDE---VQPDH-ITFVGVLSACSRGGLF-DEGR 261
W +++ G + +G+ +DL E+ E ++P++ +T+V + + + G + +EG+
Sbjct: 488 KFLWASVLGGCSTYGN----IDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGK 543
Query: 262 M 262
M
Sbjct: 544 M 544
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 41/257 (15%)
Query: 63 RLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
+LL P T+ ++ CS A+EEG+++HE + + + + + L+ MYAKC
Sbjct: 75 QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134
Query: 123 CVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL 182
+V+AR+VFD++ RD SW +
Sbjct: 135 SLVDARKVFDEMPNRDLC--------------------------SW-----------NVM 157
Query: 183 VDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK--DEVQPD 240
V+ YA+ GL++ AR LF+++ EK SW AM+TGY +AL L+ M+ +P+
Sbjct: 158 VNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPN 217
Query: 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLI 300
T ++A + G+ +VR +D ++ ++D+ G G +DEA ++
Sbjct: 218 IFTVSIAVAAAAAVKCIRRGKEIHGHIVR-AGLDSDEVLWSSLMDMYGKCGCIDEARNIF 276
Query: 301 MQMRVKPDPGVWGALLN 317
++ V+ D W ++++
Sbjct: 277 DKI-VEKDVVSWTSMID 292
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 112/239 (46%), Gaps = 14/239 (5%)
Query: 137 RDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196
+ P +T +I + AL +G+++H F + + L+ MYAKCG + AR
Sbjct: 81 KKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDAR 140
Query: 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256
+F+++ + + SWN M+ GYA G +A LF++M + D ++ +++ +
Sbjct: 141 KVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM---TEKDSYSWTAMVTGYVKKDQ 197
Query: 257 FDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG-----RLDEACDLIMQMRVKPDPGV 311
+E + + M R + P++ +T + + + R E I++ + D +
Sbjct: 198 PEEALVLYSLMQRVPNSRPNI--FTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVL 255
Query: 312 WGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW-EGVAKLRKLM 369
W +L++ G + A +K++E D ++ + + Y +++ W EG + +L+
Sbjct: 256 WSSLMDMYGKCGCIDEARNIFDKIVE---KDVVSWTSMIDRYFKSSRWREGFSLFSELV 311
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+GF + ++ LV +Y+ C + +A + D P+ +L W LI A NG + A++
Sbjct: 348 VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKY 407
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEG 92
+ LL+ G PD+ TF L AC+ +E+G
Sbjct: 408 FDLLLKSGTKPDHVTFVNVLSACTHAGLVEKG 439
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/539 (38%), Positives = 315/539 (58%), Gaps = 34/539 (6%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
L L++ YS C + A Q+FD + +R+L WN +I Y N A++++ +
Sbjct: 97 TLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNE 156
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
G FT L AC E +++H ++ + +++VG AL+D+YAKC + +A
Sbjct: 157 GFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDA 216
Query: 128 RQVFDKILER---------------------------------DPSEATLVTVISASADI 154
QVF+ + ++ + ++ TL +VI A +++
Sbjct: 217 VQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNL 276
Query: 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI 214
AAL +G+++H + F NV V ++ VDMYAKCG ++ + +F +++EK + WN +I
Sbjct: 277 AALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTII 336
Query: 215 TGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273
+G+A H + + LFEKM+ D + P+ +TF +LS C GL +EGR FF+ M Y +
Sbjct: 337 SGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGL 396
Query: 274 DPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALE 333
P+V HY+CMVD+LG +G L EA +LI + P +WG+LL SC+++ +++LAE+A E
Sbjct: 397 SPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAE 456
Query: 334 KLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFL 393
KL ELEP +AGN+V+LSNIYA WE +AK RKL+ D +KK SWI++K+K H F
Sbjct: 457 KLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFS 516
Query: 394 SGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFG 453
G++ HP EI + L L + ++ GY P E HDVE +K ++ HSE+LA+ FG
Sbjct: 517 VGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFG 576
Query: 454 LINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
L+ P+ + + I KNL+IC DCH +K S T R I VRDVNR+HHF DG CSCGD+W
Sbjct: 577 LMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 145/307 (47%), Gaps = 38/307 (12%)
Query: 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP 139
L+ C+ A+ E + H +IR E DV + LI+ Y+KC V ARQVFD +LER
Sbjct: 68 LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127
Query: 140 ---------------------------------SEATLVTVISASADIAALPQGRELHGF 166
SE T+ +V+SA + ++LH
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCL 187
Query: 167 SWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226
S + +LN+ V TAL+D+YAKCG++K A +FE +++K V+W++M+ GY + + +A
Sbjct: 188 SVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 247
Query: 227 LDLFEK-MKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285
L L+ + + ++ + T V+ ACS EG+ +++ +V + VD
Sbjct: 248 LLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVICKSGFGSNVFVASSAVD 306
Query: 286 LLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE--LEPHDA 343
+ G L E+ + +++ K + +W +++ H K + EK+ + + P++
Sbjct: 307 MYAKCGSLRESYIIFSEVQEK-NLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 365
Query: 344 GNYVILS 350
+LS
Sbjct: 366 TFSSLLS 372
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
++ A A+ + + HG R E +V + L++ Y+KCG V++AR +F+ + E+
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFE 265
+VSWN MI Y + ++ALD+F +M++E + T VLSAC E +
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 266 SMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316
V+ ID ++ T ++DL G + +A + M+ K W +++
Sbjct: 187 LSVKTC-IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMV 235
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNG-PYEVAIEL 60
GFG + +A+ V +Y+ C L ++ +F + ++NL LWN +I +A + P EV I L
Sbjct: 293 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMI-L 351
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW--ETDVFVGAALIDMY 118
+ ++ + G+ P+ TF L C +EEGRR + ++R + +V + ++D+
Sbjct: 352 FEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFK-LMRTTYGLSPNVVHYSCMVDIL 410
Query: 119 AKCSCVVNARQVFDKILERDPSEA 142
+ + A ++ K + DP+ +
Sbjct: 411 GRAGLLSEAYELI-KSIPFDPTAS 433
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/548 (38%), Positives = 319/548 (58%), Gaps = 38/548 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNG-PYEVAIEL 60
GF L T+L+ + A Q+FD + + +FLWN L + Y N P+E ++ L
Sbjct: 38 GFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFE-SLLL 96
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
Y ++ ++G+ PD FT+PF +KA S L G +H V++ + V L+ MY K
Sbjct: 97 YKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMK 156
Query: 121 CSCVVNARQVFDKILERDP---------------------------------SEATLVTV 147
+ +A +F+ + +D T+V++
Sbjct: 157 FGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSM 216
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
+SA + +L G E++ + + + N+ V+ A +DM+ KCG + AR LFE+++++ V
Sbjct: 217 LSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNV 276
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFES 266
VSW+ MI GYAM+G S +AL LF M++E ++P+++TF+GVLSACS GL +EG+ +F
Sbjct: 277 VSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSL 336
Query: 267 MVR--DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
MV+ D +++P +HY CMVDLLG SG L+EA + I +M V+PD G+WGALL +C +H
Sbjct: 337 MVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRD 396
Query: 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384
+ L + + L+E P +V+LSNIYA A W+ V K+R M G KK A S +E
Sbjct: 397 MILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVE 456
Query: 385 VKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCH 444
+ K H F GD SHP IY KL + ++++ GYVP T SVFHDVE +EK + H
Sbjct: 457 FEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHH 516
Query: 445 SERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDG 504
SE+LAIAFGLI G + + KNL+ CDDCH KF+S +T EI +RD NR+HHF++G
Sbjct: 517 SEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNG 576
Query: 505 ICSCGDYW 512
+CSC ++W
Sbjct: 577 VCSCKEFW 584
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 6/226 (2%)
Query: 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218
Q +++H R F + T L++ G + AR +F+++ + R+ WN + GY
Sbjct: 26 QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85
Query: 219 MHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277
+ ++L L++KM+D V+PD T+ V+ A S+ G F G +V+ Y
Sbjct: 86 RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVK-YGFGCLG 144
Query: 278 QHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE 337
T +V + G L A L M+VK D W A L C G+ +A K+
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVCVQTGNSAIALEYFNKMCA 203
Query: 338 LEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWI 383
+ ++ ++S + A G ++ + + DR K+ I C+ I
Sbjct: 204 -DAVQFDSFTVVSML--SACGQLGSLEIGEEIYDRARKEEIDCNII 246
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/527 (37%), Positives = 316/527 (59%), Gaps = 35/527 (6%)
Query: 21 DCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80
+ ++ A +F I F +N +IR Y +E A+ Y +++ G PDNFT+P L
Sbjct: 80 NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLL 139
Query: 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140
KAC+ L +I EG++IH V + E DVFV +LI+MY +C + + VF+K+ + +
Sbjct: 140 KACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAA 199
Query: 141 ----------------------------------EATLVTVISASADIAALPQGRELHGF 166
E+ +V+ + A A+ AL G +HGF
Sbjct: 200 SWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGF 259
Query: 167 SWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226
R+ ELN+ V+T+LVDMY KCG + A ++F+++ ++ ++++AMI+G A+HG A
Sbjct: 260 LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESA 319
Query: 227 LDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285
L +F KM K+ ++PDH+ +V VL+ACS GL EGR F M+++ ++P+ +HY C+VD
Sbjct: 320 LRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVD 379
Query: 286 LLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345
LLG +G L+EA + I + ++ + +W L+ C++ +++L ++A ++L++L H+ G+
Sbjct: 380 LLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGD 439
Query: 346 YVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEI 405
Y+++SN+Y++ W+ VA+ R + +G+K++ S +E+K K H F+S D SHP C EI
Sbjct: 440 YLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEI 499
Query: 406 YAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLI 465
Y L +E ++K GY P + +V+ +EK + HS+++AIAFGL+ TP G+ + I
Sbjct: 500 YKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKI 559
Query: 466 TKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
+NL++C DCH K IS I EREI VRD NR+H FK G CSC DYW
Sbjct: 560 ARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
++ T LV +Y C CL A +F ++ +RN ++ +I A +G E A+ ++ ++++
Sbjct: 270 IVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKE 329
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIR-NKWETDVFVGAALIDMYAKCSCVVN 126
GL PD+ + L ACS ++EGRR+ ++++ K E L+D+ + +
Sbjct: 330 GLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEE 389
Query: 127 ARQVFDKI 134
A + I
Sbjct: 390 ALETIQSI 397
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/541 (36%), Positives = 317/541 (58%), Gaps = 35/541 (6%)
Query: 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE 66
P + L+ LY+ + +A ++F+ +P+ ++ W+ +I + NG A++L+ R+ E
Sbjct: 282 PRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMRE 341
Query: 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
+VP+ FT L C+ G ++H V++ ++ D++V ALID+YAKC +
Sbjct: 342 AFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDT 401
Query: 127 ARQVFDKILERDP---------------------------------SEATLVTVISASAD 153
A ++F ++ ++ +E T + + A A
Sbjct: 402 AVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACAS 461
Query: 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM 213
+A++ G ++HG + + V V +L+DMYAKCG +K A+++F ++ V SWNA+
Sbjct: 462 LASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNAL 521
Query: 214 ITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272
I+GY+ HG +AL + + MKD + +P+ +TF+GVLS CS GL D+G+ FESM+RD+
Sbjct: 522 ISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHG 581
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332
I+P ++HYTCMV LLG SG+LD+A LI + +P +W A+L++ + + A +
Sbjct: 582 IEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSA 641
Query: 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAF 392
E+++++ P D YV++SN+YA A W VA +RK M + G+KK SWIE + H F
Sbjct: 642 EEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYF 701
Query: 393 LSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAF 452
G + HP+ I L+WL + AGYVP +V D++++EK + HSERLA+A+
Sbjct: 702 SVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAY 761
Query: 453 GLINTPDG-TRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDY 511
GL+ P R+LI KNL+IC DCH A+K IS I +R++ +RD+NR+HHF G+CSCGD+
Sbjct: 762 GLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDH 821
Query: 512 W 512
W
Sbjct: 822 W 822
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 164/357 (45%), Gaps = 36/357 (10%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G+ + + L++ YS C + +A +F+ I +++ +W ++ Y NG +E +++L
Sbjct: 175 LGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKL 234
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ G +P+N+TF ALKA L A + + +H +++ + D VG L+ +Y +
Sbjct: 235 LSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQ 294
Query: 121 CSCVVNARQVFDKILERD---------------------------------PSEATLVTV 147
+ +A +VF+++ + D P+E TL ++
Sbjct: 295 LGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSI 354
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
++ A G +LHG + F+L++ V AL+D+YAKC + A LF +L K
Sbjct: 355 LNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNE 414
Query: 208 VSWNAMITGYAMHGHSTKALDLF-EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266
VSWN +I GY G KA +F E ++++V +TF L AC+ D G
Sbjct: 415 VSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGL 474
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG 323
++ + V ++D+ G + A + +M D W AL++ HG
Sbjct: 475 AIKTNNA-KKVAVSNSLIDMYAKCGDIKFAQSVFNEMET-IDVASWNALISGYSTHG 529
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 39/316 (12%)
Query: 25 NAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84
+A LFD +P+RN + L + YA P I LY RL G + F LK
Sbjct: 102 DALNLFDEMPERNNVSFVTLAQGYACQDP----IGLYSRLHREGHELNPHVFTSFLKLFV 157
Query: 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD------ 138
+L E +H +++ ++++ FVGAALI+ Y+ C V +AR VF+ IL +D
Sbjct: 158 SLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAG 217
Query: 139 ---------------------------PSEATLVTVISASADIAALPQGRELHGFSWRHR 171
P+ T T + AS + A + +HG +
Sbjct: 218 IVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTC 277
Query: 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFE 231
+ L+ +V L+ +Y + G + A +F ++ + VV W+ MI + +G +A+DLF
Sbjct: 278 YVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFI 337
Query: 232 KMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290
+M++ V P+ T +L+ C+ G G +V D + ++D+
Sbjct: 338 RMREAFVVPNEFTLSSILNGCAIGKCSGLGEQ-LHGLVVKVGFDLDIYVSNALIDVYAKC 396
Query: 291 GRLDEACDLIMQMRVK 306
++D A L ++ K
Sbjct: 397 EKMDTAVKLFAELSSK 412
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 142/359 (39%), Gaps = 66/359 (18%)
Query: 72 DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVF 131
D+ + L+ C + + IH D+++ D+F L++ Y K +A +F
Sbjct: 48 DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107
Query: 132 DKILERDPSEATLVTVISASADIAAL-----PQGREL--HGFS----------------W 168
D++ ER+ + A D L +G EL H F+ W
Sbjct: 108 DEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPW 167
Query: 169 RHR------FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGH 222
H ++ N V AL++ Y+ CG V AR +FE + K +V W +++ Y +G+
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227
Query: 223 STKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRD-YHIDPSV--- 277
+L L M+ P++ TF L A G FD + +++ Y +DP V
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287
Query: 278 --QHYTCMVDL------------------------LGHSGRLDEACDLIMQMR---VKPD 308
Q YT + D+ +G +EA DL ++MR V P+
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347
Query: 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYV--ILSNIYARAANWEGVAKL 365
++LN C + L E L L+ D YV L ++YA+ + KL
Sbjct: 348 EFTLSSILNGCAIGKCSGLGE-QLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKL 405
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/520 (42%), Positives = 309/520 (59%), Gaps = 33/520 (6%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN--------- 73
A FDR+P ++ WN +I YA G E A EL+Y ++E V N
Sbjct: 140 FEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIEC 199
Query: 74 --------FTFPFALKACSALSA----------IEEGRRIHEDVIRNKWETDVFVGAALI 115
F ++ A +A +E + +D+ NK ++ A+I
Sbjct: 200 GDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNK---NLVTWNAMI 256
Query: 116 DMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFE 173
Y + S + ++F +LE P+ + L + + ++++AL GR++H +
Sbjct: 257 SGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLC 316
Query: 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM 233
+V T+L+ MY KCG + A LFE +++K VV+WNAMI+GYA HG++ KAL LF +M
Sbjct: 317 NDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREM 376
Query: 234 KD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGR 292
D +++PD ITFV VL AC+ GL + G +FESMVRDY ++P HYTCMVDLLG +G+
Sbjct: 377 IDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGK 436
Query: 293 LDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352
L+EA LI M +P V+G LL +C++H +V+LAE A EKL++L +A YV L+NI
Sbjct: 437 LEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANI 496
Query: 353 YARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWL 412
YA WE VA++RK M + + K SWIE++NK H F S D HP D I+ KLK L
Sbjct: 497 YASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKEL 556
Query: 413 EGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKIC 472
E +MK AGY P E H+VE ++K ++ HSE+LA+AFG I P G+++ + KNL+IC
Sbjct: 557 EKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRIC 616
Query: 473 DDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
DCH AIKFIS+I +REI VRD R+HHFKDG CSCGDYW
Sbjct: 617 GDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 97/212 (45%), Gaps = 13/212 (6%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
T L+ +Y C L +A +LF+ + ++++ WN +I YA +G + A+ L+ +++ +
Sbjct: 323 TSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIR 382
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRN-KWETDVFVGAALIDMYAKCSCVVNARQ 129
PD TF L AC+ + G E ++R+ K E ++D+ + + A +
Sbjct: 383 PDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALK 442
Query: 130 VFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTA---LVDMY 186
+ + R P A T++ A + + EL F+ +LN + L ++Y
Sbjct: 443 LIRSMPFR-PHAAVFGTLLGA----CRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIY 497
Query: 187 AKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218
A + + ++++E VV + GY+
Sbjct: 498 ASKNRWEDVARVRKRMKESNVVK----VPGYS 525
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 31/296 (10%)
Query: 114 LIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFE 173
LI + S ++ A Q+FD+I E D T I S + + + F R F+
Sbjct: 99 LIGISKDPSRMMEAHQLFDEIPEPD----TFSYNIMLSCYVRNV-NFEKAQSFFDRMPFK 153
Query: 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM 233
T ++ YA+ G ++ AR LF + EK VSWNAMI+GY G KA F
Sbjct: 154 DAASWNT-MITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFF--- 209
Query: 234 KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293
+V P + V +A G + + E+M +D ++ ++ + M+ + R
Sbjct: 210 --KVAP--VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265
Query: 294 DEACDLIMQM---RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEP--HDAGNYVI 348
++ L M ++P+ + L C ++L + +++ +D
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR-QIHQIVSKSTLCNDVTALTS 324
Query: 349 LSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDE 404
L ++Y + KL ++M KK +W +A +SG A H N D+
Sbjct: 325 LISMYCKCGELGDAWKLFEVM-----KKKDVVAW-------NAMISGYAQHGNADK 368
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/572 (36%), Positives = 326/572 (56%), Gaps = 82/572 (14%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYE--VAIELYYRLLEIGLV-PDNFTFPFA 79
L AH++F+++PQRN F WN +IR ++ + + +AI L+Y ++ V P+ FTFP
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 80 LKACSALSAIEEGRRIH-----------------------------------------ED 98
LKAC+ I+EG++IH +D
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 99 VI----RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---------------- 138
++ R K + ++ + +ID Y + AR +FDK+ +R
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 139 -----------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTA 181
P+ TLV+V+ A + + +L G LH ++ ++ + +A
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPD 240
L+DMY+KCG+++ A ++FE+L + V++W+AMI G+A+HG + A+D F KM+ V+P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Query: 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLI 300
+ ++ +L+ACS GGL +EGR +F MV ++P ++HY CMVDLLG SG LDEA + I
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434
Query: 301 MQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360
+ M +KPD +W ALL +C++ G+V++ + L+++ PHD+G YV LSN+YA NW
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494
Query: 361 GVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAG 420
V+++R M ++ I+K CS I++ H F+ D SHP EI + L + +++ AG
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554
Query: 421 YVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIK 480
Y P T V ++E ++K N++ HSE++A AFGLI+T G + I KNL+IC+DCH +IK
Sbjct: 555 YRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIK 614
Query: 481 FISKITEREITVRDVNRYHHFKDGICSCGDYW 512
ISK+ +R+ITVRD R+HHF+DG CSC DYW
Sbjct: 615 LISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/539 (36%), Positives = 310/539 (57%), Gaps = 35/539 (6%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
V+ L+++Y+ C L A ++F+++PQR+ W LI Y+ + A+ + ++L
Sbjct: 96 VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF 155
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
G P+ FT +KA +A G ++H ++ ++++V VG+AL+D+Y + + +A
Sbjct: 156 GYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215
Query: 128 RQVFDKILERD---------------------------------PSEATLVTVISASADI 154
+ VFD + R+ PS + ++ A +
Sbjct: 216 QLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST 275
Query: 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI 214
L QG+ +H + + +L L+DMYAK G + AR +F++L ++ VVSWN+++
Sbjct: 276 GFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLL 335
Query: 215 TGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273
T YA HG +A+ FE+M+ ++P+ I+F+ VL+ACS GL DEG ++E M +D I
Sbjct: 336 TAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GI 394
Query: 274 DPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALE 333
P HY +VDLLG +G L+ A I +M ++P +W ALLN+C++H + +L A E
Sbjct: 395 VPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAE 454
Query: 334 KLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFL 393
+ EL+P D G +VIL NIYA W A++RK M + G+KK ACSW+E++N H F+
Sbjct: 455 HVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFV 514
Query: 394 SGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFG 453
+ D HP +EI K + + ++KE GYVP T V V+ E+ + HSE++A+AF
Sbjct: 515 ANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFA 574
Query: 454 LINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
L+NTP G+ + I KN+++C DCH AIK SK+ REI VRD NR+HHFKDG CSC DYW
Sbjct: 575 LLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 39/323 (12%)
Query: 65 LEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123
LE +P D + LK C+ + +GR +H ++++ + D+ +G L++MYAKC
Sbjct: 51 LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110
Query: 124 VVNARQVFDKILERD---------------------------------PSEATLVTVISA 150
+ AR+VF+K+ +RD P+E TL +VI A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170
Query: 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSW 210
+A G +LHGF + F+ NV V +AL+D+Y + GL+ A+ +F+ L + VSW
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230
Query: 211 NAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269
NA+I G+A + KAL+LF+ M +D +P H ++ + ACS G ++G+ M++
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290
Query: 270 DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAE 329
+ T ++D+ SG + +A + ++ K D W +LL + HG K A
Sbjct: 291 SGEKLVAFAGNT-LLDMYAKSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQHGFGKEAV 348
Query: 330 LALEKL--IELEPHDAGNYVILS 350
E++ + + P++ +L+
Sbjct: 349 WWFEEMRRVGIRPNEISFLSVLT 371
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/545 (36%), Positives = 316/545 (57%), Gaps = 35/545 (6%)
Query: 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYY 62
F ++ ++A V Y+ C L A ++F I + + WN LI +A + ++++ +
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485
Query: 63 RLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
++ GL+PD+FT L ACS L ++ G+ +H +IRN E D+FV +++ +Y C
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545
Query: 123 CVVNARQVFDKILERD----------------PSEA-----------------TLVTVIS 149
+ + +FD + ++ P A +++ V
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209
A + + +L GRE H ++ +H E + + +L+DMYAK G + + +F L+EK S
Sbjct: 606 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 665
Query: 210 WNAMITGYAMHGHSTKALDLFEKMKDEV-QPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
WNAMI GY +HG + +A+ LFE+M+ PD +TF+GVL+AC+ GL EG + + M
Sbjct: 666 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 725
Query: 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQ-MRVKPDPGVWGALLNSCKLHGHVKL 327
+ + P+++HY C++D+LG +G+LD+A ++ + M + D G+W +LL+SC++H ++++
Sbjct: 726 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 785
Query: 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKN 387
E KL ELEP NYV+LSN+YA WE V K+R+ M + ++K CSWIE+
Sbjct: 786 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 845
Query: 388 KAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447
K +F+ G+ +EI + LE ++ + GY P T SV HD+ +EK + HSE+
Sbjct: 846 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEK 905
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LA+ +GLI T +GT + + KNL+IC DCH A K ISK+ EREI VRD R+HHFK+G+CS
Sbjct: 906 LALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCS 965
Query: 508 CGDYW 512
CGDYW
Sbjct: 966 CGDYW 970
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 41/285 (14%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
VL T+++ +Y+ C ++ +FD + +NLF WN +I +Y+ N Y+ +E + ++
Sbjct: 121 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180
Query: 68 G-LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
L+PD+FT+P +KAC+ +S + G +H V++ DVFVG AL+ Y V +
Sbjct: 181 TDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTD 240
Query: 127 ARQVFDKILERD-------------------------------------PSEATLVTVIS 149
A Q+FD + ER+ P ATLVTV+
Sbjct: 241 ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLP 300
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209
A + G+ +HG++ + R + + + AL+DMY+KCG + A+ +F+ K VVS
Sbjct: 301 VCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVS 360
Query: 210 WNAMITGYAMHGHSTKALDLFEKM---KDEVQPDHITFVGVLSAC 251
WN M+ G++ G + D+ +M ++V+ D +T + + C
Sbjct: 361 WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 405
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/410 (22%), Positives = 177/410 (43%), Gaps = 42/410 (10%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
VL L+ +YS C C+ NA +F +N+ WN ++ ++ G ++ ++L
Sbjct: 328 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 387
Query: 68 G--LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVV 125
G + D T A+ C S + + +H ++ ++ + V A + YAKC +
Sbjct: 388 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 447
Query: 126 NARQVFDKILERD---------------------------------PSEATLVTVISASA 152
A++VF I + P T+ +++SA +
Sbjct: 448 YAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 507
Query: 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212
+ +L G+E+HGF R+ E ++ V +++ +Y CG + + LF+ + +K +VSWN
Sbjct: 508 KLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNT 567
Query: 213 MITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDY 271
+ITGY +G +AL +F +M +Q I+ + V ACS GR ++
Sbjct: 568 VITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-- 625
Query: 272 HIDPSVQHYTC-MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAEL 330
H+ C ++D+ +G + ++ + ++ K W A++ +HG K A
Sbjct: 626 HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHGLAKEAIK 684
Query: 331 ALEKLIEL--EPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378
E++ P D +L+ EG+ L ++ G+K ++
Sbjct: 685 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNL 734
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 147 VISASADIAALPQGRELHGF-SWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
++ AS + GR++H S R + + T ++ MYA CG +R +F+ LR K
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKM--KDEVQPDHITFVGVLSACSRGGLFDEG 260
+ WNA+I+ Y+ + + L+ F +M ++ PDH T+ V+ AC+ G+ D G
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACA--GMSDVG 204
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/538 (37%), Positives = 306/538 (56%), Gaps = 35/538 (6%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
++T L+ YS C+ A LF+R +L WN ++ Y + ++L+ + + G
Sbjct: 454 VSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128
D+FT K C L AI +G+++H I++ ++ D++V + ++DMY KC + A+
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 572
Query: 129 QVFDKILERD---------------------------------PSEATLVTVISASADIA 155
FD I D P E T+ T+ AS+ +
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLT 632
Query: 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
AL QGR++H + + + V T+LVDMYAKCG + A LF+++ + +WNAM+
Sbjct: 633 ALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLV 692
Query: 216 GYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274
G A HG + L LF++MK ++PD +TF+GVLSACS GL E SM DY I
Sbjct: 693 GLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIK 752
Query: 275 PSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334
P ++HY+C+ D LG +G + +A +LI M ++ ++ LL +C++ G + + K
Sbjct: 753 PEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATK 812
Query: 335 LIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLS 394
L+ELEP D+ YV+LSN+YA A+ W+ + R +M +KK SWIEVKNK H F+
Sbjct: 813 LLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVV 872
Query: 395 GDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGL 454
D S+ + IY K+K + +K+ GYVP T+ DVE +EK + HSE+LA+AFGL
Sbjct: 873 DDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGL 932
Query: 455 INTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
++TP T + + KNL++C DCH A+K+I+K+ REI +RD NR+H FKDGICSCGDYW
Sbjct: 933 LSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 184/415 (44%), Gaps = 40/415 (9%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G ++ L+++Y A +FD + +R+L WN +I A NG A+ L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 61 YYRLLEIGLVPDNFTFPFALKACSAL-SAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119
+ +LL GL PD +T LKA S+L + +++H I+ +D FV ALID Y+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463
Query: 120 KCSCVVNARQVFDK-----------------------------ILERDPSEA---TLVTV 147
+ C+ A +F++ ++ + + TL TV
Sbjct: 464 RNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATV 523
Query: 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207
+ A+ QG+++H ++ + ++L++ V + ++DMY KCG + A+ F+ +
Sbjct: 524 FKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 583
Query: 208 VSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266
V+W MI+G +G +A +F +M+ V PD T + A S ++GR +
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN 643
Query: 267 MVR-DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHV 325
++ + DP V T +VD+ G +D+A L ++ + + W A+L HG
Sbjct: 644 ALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEG 700
Query: 326 K--LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378
K L K + ++P +LS E +R + D GIK I
Sbjct: 701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEI 755
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 145/324 (44%), Gaps = 28/324 (8%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G+ +++ ++ +Y C + A FD IP + W +I NG E A ++
Sbjct: 547 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVF 606
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
++ +G++PD FT KA S L+A+E+GR+IH + ++ D FVG +L+DMYAKC
Sbjct: 607 SQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKC 666
Query: 122 SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQ---GRELHGFSWRHRFELNVKV 178
+ +A +F +I ++ + + +A + L Q G+E ++ L +K
Sbjct: 667 GSIDDAYCLFKRI--------EMMNITAWNAMLVGLAQHGEGKETLQL-FKQMKSLGIKP 717
Query: 179 -KTALVDMYAKCGLVKVARNLFEQLR--------EKRVVSWNAMITGYAMHGHSTKALDL 229
K + + + C + ++ +R + + ++ + G +A +L
Sbjct: 718 DKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL 777
Query: 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH 289
E M E + +L+AC G + G+ ++ +D S Y + ++
Sbjct: 778 IESMSMEASAS--MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA--YVLLSNMYAA 833
Query: 290 SGRLDE---ACDLIMQMRVKPDPG 310
+ + DE A ++ +VK DPG
Sbjct: 834 ASKWDEMKLARTMMKGHKVKKDPG 857
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 125/264 (47%), Gaps = 22/264 (8%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G +A LV++Y + LF+ +P R++ LWN++++AY G E AI+L
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233
Query: 61 YYRLLEIGLVPDNFTFPFALK---------ACSALSAIEEGRRIHEDVIRNKWETDVFVG 111
GL P+ T + + + + + E + RNK ++ ++
Sbjct: 234 SSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSE-YLH 292
Query: 112 AALIDMYAKCSCVVNARQVFDKILERDPS--EATLVTVISASADIAALPQGRELHGFSWR 169
+ KC F ++E D + T + +++ + + +L G+++H + +
Sbjct: 293 SGQYSALLKC---------FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDL 229
+L + V +L++MY K AR +F+ + E+ ++SWN++I G A +G +A+ L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 230 F-EKMKDEVQPDHITFVGVLSACS 252
F + ++ ++PD T VL A S
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAAS 427
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 13/252 (5%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIE------LYY 62
L L+ +YS C L A ++FD++P R+L WN ++ AYA + E +E L +
Sbjct: 76 LINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSS--ECVVENIQQAFLLF 133
Query: 63 RLLEIGLV-PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
R+L +V T LK C + H + + D FV AL+++Y K
Sbjct: 134 RILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKF 193
Query: 122 SCVVNARQVFDKILERDPS--EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179
V + +F+++ RD L + A+ H S + E+ +++
Sbjct: 194 GKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHS-SGLNPNEITLRLL 252
Query: 180 TALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQ 238
+ + G VK N + ++ N ++ Y G + L F M + +V+
Sbjct: 253 ARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVE 312
Query: 239 PDHITFVGVLSA 250
D +TF+ +L+
Sbjct: 313 CDQVTFILMLAT 324
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 39/192 (20%)
Query: 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD------------- 138
G+ H ++ + + F+ LI MY+KC + AR+VFDK+ +RD
Sbjct: 58 GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117
Query: 139 -------------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFE 173
S TL ++ + HG++ + +
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLD 177
Query: 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM 233
+ V ALV++Y K G VK + LFE++ + VV WN M+ Y G +A+DL
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237
Query: 234 KDE-VQPDHITF 244
+ P+ IT
Sbjct: 238 HSSGLNPNEITL 249
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/552 (38%), Positives = 312/552 (56%), Gaps = 69/552 (12%)
Query: 30 FDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PDNFTFPFALKACSALSA 88
F+++ +R++ WN +I + G A++++ ++L L+ PD FT L AC+ L
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294
Query: 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYA----------------------------- 119
+ G++IH ++ ++ V ALI MY+
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354
Query: 120 ----KCSCVVNARQVFDKILERD---------------------------------PSEA 142
K + A+ +F + +RD P+
Sbjct: 355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414
Query: 143 TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202
TL ++S ++ +A+L G+++HG + + +V V AL+ MYAK G + A F+ +
Sbjct: 415 TLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLI 474
Query: 203 R-EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEG 260
R E+ VSW +MI A HGH+ +AL+LFE M E ++PDHIT+VGV SAC+ GL ++G
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQG 534
Query: 261 RMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCK 320
R +F+ M I P++ HY CMVDL G +G L EA + I +M ++PD WG+LL++C+
Sbjct: 535 RQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR 594
Query: 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIAC 380
+H ++ L ++A E+L+ LEP ++G Y L+N+Y+ WE AK+RK M D +KK
Sbjct: 595 VHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654
Query: 381 SWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANM 440
SWIEVK+K H F D +HP +EIY +K + +K+ GYVP T SV HD+E + K +
Sbjct: 655 SWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQI 714
Query: 441 ICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHH 500
+ HSE+LAIAFGLI+TPD T L I KNL++C+DCH AIKFISK+ REI VRD R+HH
Sbjct: 715 LRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHH 774
Query: 501 FKDGICSCGDYW 512
FKDG CSC DYW
Sbjct: 775 FKDGFCSCRDYW 786
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 169/376 (44%), Gaps = 51/376 (13%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
F ++ VL+ YS + + + FD++PQR+ W +I Y G Y AI +
Sbjct: 80 AFSWNTVLSA-----YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVM 134
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+++ G+ P FT L + +A +E G+++H +++ +V V +L++MYAKC
Sbjct: 135 GDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 122 SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTA 181
+ A+ VFD+++ RD S SW A
Sbjct: 195 GDPMMAKFVFDRMVVRDIS--------------------------SW-----------NA 217
Query: 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE--VQP 239
++ ++ + G + +A FEQ+ E+ +V+WN+MI+G+ G+ +ALD+F KM + + P
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSP 277
Query: 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDL 299
D T VLSAC+ G+ +V D S ++ + G ++ A L
Sbjct: 278 DRFTLASVLSACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRL 336
Query: 300 IMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK--LIELEPHDAGNYVILSNIYARAA 357
I Q R D + G + L G++KL ++ K + L+ D + + Y +
Sbjct: 337 IEQ-RGTKDLKIEGF---TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHG 392
Query: 358 NWEGVAKLRKLMIDRG 373
++ L + M+ G
Sbjct: 393 SYGEAINLFRSMVGGG 408
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 145/320 (45%), Gaps = 37/320 (11%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
T L+ Y ++ A +F + R++ W +I Y +G Y AI L+ ++ G
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130
P+++T L S+L+++ G++IH +++ V V ALI MYAK + +A +
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRA 470
Query: 131 FDKI-LERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL------- 182
FD I ERD +S ++ I AL Q HG + + L
Sbjct: 471 FDLIRCERD--------TVSWTSMIIALAQ----HGHAEEALELFETMLMEGLRPDHITY 518
Query: 183 VDMYAKC---GLVKVARNLFEQLRE-----KRVVSWNAMITGYAMHGHSTKALDLFEKMK 234
V +++ C GLV R F+ +++ + + M+ + G +A + EKM
Sbjct: 519 VGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM- 577
Query: 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL 293
++PD +T+ +LSAC D G++ E ++ ++P + Y+ + +L G+
Sbjct: 578 -PIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL---LEPENSGAYSALANLYSACGKW 633
Query: 294 DEACDLIMQM---RVKPDPG 310
+EA + M RVK + G
Sbjct: 634 EEAAKIRKSMKDGRVKKEQG 653
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/524 (39%), Positives = 297/524 (56%), Gaps = 36/524 (6%)
Query: 25 NAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84
+A +LFD IP+RNL WN I +G AIE + I P++ TF L ACS
Sbjct: 161 DARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 220
Query: 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER------- 137
+ G ++H V+R+ ++TDV V LID Y KC + ++ +F ++ +
Sbjct: 221 DWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCS 280
Query: 138 --------------------------DPSEATLVTVISASADIAALPQGRELHGFSWRHR 171
+ S+ + +V+SA A +A L GR +H + +
Sbjct: 281 LVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC 340
Query: 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFE 231
E + V +ALVDMY KCG ++ + F+++ EK +V+ N++I GYA G AL LFE
Sbjct: 341 VERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFE 400
Query: 232 KMKDE---VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288
+M P+++TFV +LSACSR G + G F+SM Y I+P +HY+C+VD+LG
Sbjct: 401 EMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLG 460
Query: 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348
+G ++ A + I +M ++P VWGAL N+C++HG +L LA E L +L+P D+GN+V+
Sbjct: 461 RAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVL 520
Query: 349 LSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAK 408
LSN +A A W +R+ + GIKK SWI VKN+ HAF + D SH EI
Sbjct: 521 LSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTT 580
Query: 409 LKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKN 468
L L M+ AGY P + +D+E +EKA + HSE+LA+AFGL++ P + ITKN
Sbjct: 581 LAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKN 640
Query: 469 LKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
L+IC DCH KF+S +REI VRD NR+H FKDGICSC DYW
Sbjct: 641 LRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 173/385 (44%), Gaps = 42/385 (10%)
Query: 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE 66
P LA L+++YS D +A + P RN+ W LI A NG + A+ ++ +
Sbjct: 42 PFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR 101
Query: 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
G+VP++FTFP A KA ++L G++IH ++ DVFVG + DMY K +
Sbjct: 102 EGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDD 161
Query: 127 ARQVFDKILERD---------------------------------PSEATLVTVISASAD 153
AR++FD+I ER+ P+ T ++A +D
Sbjct: 162 ARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSD 221
Query: 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM 213
L G +LHG R F+ +V V L+D Y KC ++ + +F ++ K VSW ++
Sbjct: 222 WLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSL 281
Query: 214 ITGYAMHGHSTKALDLF-EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272
+ Y + KA L+ KD V+ VLSAC+ + GR V+
Sbjct: 282 VAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC- 340
Query: 273 IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332
++ ++ + +VD+ G G ++++ +M K + +L+ G V ++AL
Sbjct: 341 VERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQV---DMAL 396
Query: 333 EKLIELEPHDAG---NYVILSNIYA 354
E+ P G NY+ ++ +
Sbjct: 397 ALFEEMAPRGCGPTPNYMTFVSLLS 421
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE-- 66
+ + LV +Y C C+ ++ Q FD +P++NL N LI YA G ++A+ L+ +
Sbjct: 347 VGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRG 406
Query: 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW--ETDVFVGAALIDMYAKCSCV 124
G P+ TF L ACS A+E G +I D +R+ + E + ++DM + V
Sbjct: 407 CGPTPNYMTFVSLLSACSRAGAVENGMKIF-DSMRSTYGIEPGAEHYSCIVDMLGRAGMV 465
Query: 125 VNARQVFDKI 134
A + K+
Sbjct: 466 ERAYEFIKKM 475
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/510 (38%), Positives = 303/510 (59%), Gaps = 19/510 (3%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
T +V Y + + +A ++FD +P++ W ++ Y NG E A EL+ E+ V
Sbjct: 207 TTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELF----EVMPV 262
Query: 71 PDNFTFPFALKACSALSAIEEGRRIHEDVI-RN--KWETDVFVGAALIDMYAKCSCVVNA 127
+ I + RR+ + + RN W+T +I ++ + + A
Sbjct: 263 KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQT-------VIKIHERNGFELEA 315
Query: 128 RQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185
+F + ++ P+ TL++++S A +A+L G+++H R +F+++V V + L+ M
Sbjct: 316 LDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTM 375
Query: 186 YAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM--KDEVQPDHIT 243
Y KCG + ++ +F++ K ++ WN++I+GYA HG +AL +F +M +P+ +T
Sbjct: 376 YIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVT 435
Query: 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303
FV LSACS G+ +EG +ESM + + P HY CMVD+LG +GR +EA ++I M
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495
Query: 304 RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363
V+PD VWG+LL +C+ H + +AE +KLIE+EP ++G Y++LSN+YA W VA
Sbjct: 496 TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 364 KLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDA-SHPNCDEIYAKLKWLEGRMKEAGYV 422
+LRKLM R ++KS CSW EV+NK HAF G SHP + I L L+G ++EAGY
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYN 615
Query: 423 PGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFI 482
P HDV+ +EK N + HSERLA+A+ L+ +G + + KNL++C DCH AIK I
Sbjct: 616 PDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKII 675
Query: 483 SKITEREITVRDVNRYHHFKDGICSCGDYW 512
SK+ EREI +RD NR+HHF++G CSC DYW
Sbjct: 676 SKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 53/359 (14%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE------ 66
LV Y + A ++FD +P+RN+ W L++ Y NG +VA L++++ E
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSW 144
Query: 67 ----IG---------------LVP--DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWE 105
IG ++P DN + ++E R I +++ E
Sbjct: 145 TVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS----E 200
Query: 106 TDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHG 165
V ++ Y + + V +AR++FD + E+ +E + +++ + EL
Sbjct: 201 RSVITWTTMVTGYGQNNRVDDARKIFDVMPEK--TEVSWTSMLMGYVQNGRIEDAEEL-- 256
Query: 166 FSWRHRFELNVKVK-----TALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMH 220
FE+ + VK A++ + G + AR +F+ ++E+ SW +I + +
Sbjct: 257 ------FEV-MPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERN 309
Query: 221 GHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQH 279
G +ALDLF M+ + V+P T + +LS C+ G+ +VR D V
Sbjct: 310 GFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR-CQFDVDVYV 368
Query: 280 YTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIEL 338
+ ++ + G L ++ LI D +W ++++ HG L E AL+ E+
Sbjct: 369 ASVLMTMYIKCGELVKS-KLIFDRFPSKDIIMWNSIISGYASHG---LGEEALKVFCEM 423
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 126 NARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFEL----NVKVKTA 181
+AR++FD++ +R+ +IS + ++ + E+ R F+L NV TA
Sbjct: 66 DARKLFDEMPDRN--------IISWNGLVSGYMKNGEID--EARKVFDLMPERNVVSWTA 115
Query: 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH 241
LV Y G V VA +LF ++ EK VSW M+ G+ G A L+E + D+ D+
Sbjct: 116 LVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK---DN 172
Query: 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301
I ++ + G DE R F+ M + SV +T MV G + R+D+A +
Sbjct: 173 IARTSMIHGLCKEGRVDEAREIFDEMS-----ERSVITWTTMVTGYGQNNRVDDARKIFD 227
Query: 302 QMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348
M K + W ++L +G ++ AE E ++ ++P A N +I
Sbjct: 228 VMPEKTEVS-WTSMLMGYVQNGRIEDAEELFE-VMPVKPVIACNAMI 272
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYY 62
F +A+ L+ +Y C L + +FDR P +++ +WN +I YA +G E A++++
Sbjct: 362 FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFC 421
Query: 63 RL-LEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDV 99
+ L P+ TF L ACS +EEG +I+E +
Sbjct: 422 EMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESM 459
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 169 RHRFELNVKVKTALVDM--YAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226
R + + TA V + ++ G + AR LF+ K + SWN+M+ GY + A
Sbjct: 8 RRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDA 67
Query: 227 LDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDL 286
LF++M D + I++ G++S + G DE R F+ M + +V +T +V
Sbjct: 68 RKLFDEMPDR---NIISWNGLVSGYMKNGEIDEARKVFDLMP-----ERNVVSWTALVKG 119
Query: 287 LGHSGRLDEACDLIMQMRVKPDPGVWGALL----------NSCKLH 322
H+G++D A L +M K + W +L ++CKL+
Sbjct: 120 YVHNGKVDVAESLFWKMPEK-NKVSWTVMLIGFLQDGRIDDACKLY 164
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/571 (35%), Positives = 312/571 (54%), Gaps = 67/571 (11%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68
+A L+H Y +C L +A ++F I ++++ WN +I + G + A+EL+ ++
Sbjct: 168 VANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED 227
Query: 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA- 127
+ + T L AC+ + +E GR++ + N+ ++ + A++DMY KC + +A
Sbjct: 228 VKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAK 287
Query: 128 ------------------------------RQVFDKILERD----------------PSE 141
R+V + + ++D P+E
Sbjct: 288 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNE 347
Query: 142 A------------------TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183
A TLV+ +SA A + AL GR +H + +H +N V +AL+
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 184 DMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHI 242
MY+KCG ++ +R +F + ++ V W+AMI G AMHG +A+D+F KM++ V+P+ +
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGV 467
Query: 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQ 302
TF V ACS GL DE F M +Y I P +HY C+VD+LG SG L++A I
Sbjct: 468 TFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEA 527
Query: 303 MRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGV 362
M + P VWGALL +CK+H ++ LAE+A +L+ELEP + G +V+LSNIYA+ WE V
Sbjct: 528 MPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENV 587
Query: 363 AKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYV 422
++LRK M G+KK CS IE+ H FLSGD +HP +++Y KL + ++K GY
Sbjct: 588 SELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYE 647
Query: 423 PGTESVFHDVENDE-KANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKF 481
P V +E +E K + HSE+LAI +GLI+T + + KNL++C DCH K
Sbjct: 648 PEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKL 707
Query: 482 ISKITEREITVRDVNRYHHFKDGICSCGDYW 512
IS++ +REI VRD R+HHF++G CSC D+W
Sbjct: 708 ISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 185/387 (47%), Gaps = 73/387 (18%)
Query: 7 PVLATKLVHL--YSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEV-AIELYYR 63
P A+KL + S+ L A ++FD IP+ N F WN LIRAYA +GP V +I +
Sbjct: 62 PYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA-SGPDPVLSIWAFLD 120
Query: 64 LL-EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
++ E P+ +TFPF +KA + +S++ G+ +H +++ +DVFV +LI Y C
Sbjct: 121 MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG 180
Query: 123 CVVNARQVFDKILERD---------------------------------PSEATLVTVIS 149
+ +A +VF I E+D S T+V V+S
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----- 204
A A I L GR++ + +R +N+ + A++DMY KCG ++ A+ LF+ + E
Sbjct: 241 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 300
Query: 205 --------------------------KRVVSWNAMITGYAMHGHSTKALDLFE--KMKDE 236
K +V+WNA+I+ Y +G +AL +F +++
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360
Query: 237 VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296
++ + IT V LSAC++ G + GR + S ++ + I + + ++ + G L+++
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGR-WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 297 CDLIMQMRVKPDPGVWGALLNSCKLHG 323
++ + K D VW A++ +HG
Sbjct: 420 REVFNSVE-KRDVFVWSAMIGGLAMHG 445
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 136/260 (52%), Gaps = 12/260 (4%)
Query: 64 LLEIGLVPDNFTFP--FALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
++ G D ++ FA+ A S+ +++E R++ +++ + + F LI YA
Sbjct: 53 MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK----PNSFAWNTLIRAYASG 108
Query: 122 S-CVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKV 178
V++ D + E P++ T +I A+A++++L G+ LHG + + +V V
Sbjct: 109 PDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFV 168
Query: 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-V 237
+L+ Y CG + A +F ++EK VVSWN+MI G+ G KAL+LF+KM+ E V
Sbjct: 169 ANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 228
Query: 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEAC 297
+ H+T VGVLSAC++ + GR S + + ++ ++ M+D+ G +++A
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAK 287
Query: 298 DLIMQMRVKPDPGVWGALLN 317
L M K D W +L+
Sbjct: 288 RLFDAMEEK-DNVTWTTMLD 306
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/557 (36%), Positives = 310/557 (55%), Gaps = 67/557 (12%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG--LVPDNFTFPFAL 80
L A+Q+ DR + LF N +IRA+ + E + + Y R+L G L PDN+T F +
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115
Query: 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC----------------- 123
+AC+ L E G ++H IR ++ D V LI +YA+ C
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175
Query: 124 --------------VVNARQVFDKILERDP------------------------------ 139
VV AR++F+ + ERDP
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235
Query: 140 ---SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196
+ +++V+SA + AL QGR H + R++ ++ V++ T LVD+YAKCG ++ A
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295
Query: 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGG 255
+F + EK V +W++ + G AM+G K L+LF MK D V P+ +TFV VL CS G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355
Query: 256 LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL 315
DEG+ F+SM ++ I+P ++HY C+VDL +GRL++A +I QM +KP VW +L
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415
Query: 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375
L++ +++ +++L LA +K++ELE + G YV+LSNIYA + +W+ V+ +R+ M +G++
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475
Query: 376 KSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVEND 435
K CS +EV + H F GD SHP +I A K + R++ AGY T V D++ +
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 535
Query: 436 EKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDV 495
EK + +C HSE+ AIAFG+++ + + I KNL++C DCH ISKI REI VRD
Sbjct: 536 EKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDR 595
Query: 496 NRYHHFKDGICSCGDYW 512
NR+HHFKDG CSC +W
Sbjct: 596 NRFHHFKDGHCSCNGFW 612
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 68/311 (21%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP--------------------------- 34
GF P + T L+ LY+ CL + H++F+ IP
Sbjct: 138 GFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLF 197
Query: 35 ----QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90
+R+ WN +I YA G A+ +++ + G+ + L AC+ L A++
Sbjct: 198 EGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALD 257
Query: 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD------------ 138
+GR H + RNK + V + L+D+YAKC + A +VF + E++
Sbjct: 258 QGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLA 317
Query: 139 ---------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVK 177
P+ T V+V+ + + + +G+ H S R+ F + +
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDSMRNEFGIEPQ 376
Query: 178 VK--TALVDMYAKCGLVKVARNLFEQLREK-RVVSWNAMITGYAMHGHSTKALDLFEKMK 234
++ LVD+YA+ G ++ A ++ +Q+ K W++++ M+ + + +KM
Sbjct: 377 LEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKML 436
Query: 235 DEVQPDHITFV 245
+ +H +V
Sbjct: 437 ELETANHGAYV 447
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/542 (37%), Positives = 295/542 (54%), Gaps = 35/542 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF + L +Y A +LF R+ ++++ W +I Y +N + AI+ Y
Sbjct: 327 GFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTY 386
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ + + PD T L AC+ L ++ G +H+ I+ + + V V LI+MY+KC
Sbjct: 387 RMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKC 446
Query: 122 SCVVNARQVFDKILERD--------------------------------PSEATLVTVIS 149
C+ A +F I ++ P+ TL ++
Sbjct: 447 KCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALA 506
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209
A A I AL G+E+H R L+ + AL+DMY +CG + A + F ++K V S
Sbjct: 507 ACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTS 565
Query: 210 WNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
WN ++TGY+ G + ++LF++M K V+PD ITF+ +L CS+ + +G M+F M
Sbjct: 566 WNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM- 624
Query: 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328
DY + P+++HY C+VDLLG +G L EA I +M V PDP VWGALLN+C++H + L
Sbjct: 625 EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLG 684
Query: 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNK 388
EL+ + + EL+ G Y++L N+YA W VAK+R++M + G+ CSW+EVK K
Sbjct: 685 ELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGK 744
Query: 389 AHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERL 448
HAFLS D HP EI L+ +M E G +ES D + + C HSER
Sbjct: 745 VHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERK 804
Query: 449 AIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSC 508
AIAFGLINT G + +TKNL +C++CH +KFISK REI+VRD +HHFKDG CSC
Sbjct: 805 AIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSC 864
Query: 509 GD 510
GD
Sbjct: 865 GD 866
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 139/273 (50%), Gaps = 35/273 (12%)
Query: 23 LHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PDNFTFPFALK 81
L +A +F ++ +RNLF WNVL+ YA G ++ A+ LY+R+L +G V PD +TFP L+
Sbjct: 145 LVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLR 204
Query: 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER---- 137
C + + G+ +H V+R +E D+ V ALI MY KC V +AR +FD++ R
Sbjct: 205 TCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS 264
Query: 138 -----------------------------DPSEATLVTVISASADIAALPQGRELHGFSW 168
DP TL +VISA + GR++H +
Sbjct: 265 WNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVI 324
Query: 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALD 228
F +++ V +L MY G + A LF ++ K +VSW MI+GY + KA+D
Sbjct: 325 TTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAID 384
Query: 229 LFEKM-KDEVQPDHITFVGVLSACSRGGLFDEG 260
+ M +D V+PD IT VLSAC+ G D G
Sbjct: 385 TYRMMDQDSVKPDEITVAAVLSACATLGDLDTG 417
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 159/370 (42%), Gaps = 38/370 (10%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G+ + L+ +Y C + +A LFDR+P+R++ WN +I Y NG +EL+
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELF 285
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ + + + PD T + AC L GR IH VI + D+ V +L MY
Sbjct: 286 FAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNA 345
Query: 122 SCVVNARQVFDKILERD---------------------------------PSEATLVTVI 148
A ++F ++ +D P E T+ V+
Sbjct: 346 GSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVL 405
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
SA A + L G ELH + + R V V L++MY+KC + A ++F + K V+
Sbjct: 406 SACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVI 465
Query: 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
SW ++I G ++ +AL +MK +QP+ IT L+AC+R G G+ ++
Sbjct: 466 SWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVL 525
Query: 269 RD-YHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKL 327
R +D + + ++D+ GR++ A K D W LL G +
Sbjct: 526 RTGVGLDDFLPN--ALLDMYVRCGRMNTAWSQFNSQ--KKDVTSWNILLTGYSERGQGSM 581
Query: 328 AELALEKLIE 337
+++++
Sbjct: 582 VVELFDRMVK 591
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 161/379 (42%), Gaps = 91/379 (24%)
Query: 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFV 110
NG E A++L + E+ + D F ++ C A EEG +++ + + V +
Sbjct: 72 NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVEL 131
Query: 111 GAALIDMYAKCSCVVNARQVFDKILERD-------------------------------- 138
G A + M+ + +V+A VF K+ ER+
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGG 191
Query: 139 --PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196
P T V+ I L +G+E+H R+ +EL++ V AL+ MY KCG VK AR
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251
Query: 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACS--- 252
LF+++ + ++SWNAMI+GY +G + L+LF M+ V PD +T V+SAC
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311
Query: 253 --------------------------------RGGLFDEGRMFFESMVRDYHIDPSVQHY 280
G + E F M R + +
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMER-----KDIVSW 366
Query: 281 TCMVDLLGHSGRLDEACD---LIMQMRVKPDPGVWGALLNSCKLHGH----VKLAELALE 333
T M+ ++ D+A D ++ Q VKPD A+L++C G V+L +LA++
Sbjct: 367 TTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIK 426
Query: 334 -KLIELEPHDAGNYVILSN 351
+LI +YVI++N
Sbjct: 427 ARLI--------SYVIVAN 437
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 46/255 (18%)
Query: 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
A +G +++ + L V++ A + M+ + G + A +F ++ E+ + SWN ++
Sbjct: 109 AQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVG 168
Query: 216 GYAMHGHSTKALDLFEKM--KDEVQPDHITFVGVLSAC------SRG------------- 254
GYA G+ +A+ L+ +M V+PD TF VL C +RG
Sbjct: 169 GYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYE 228
Query: 255 ----------------GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACD 298
G R+ F+ M R + + M+ +G E +
Sbjct: 229 LDIDVVNALITMYVKCGDVKSARLLFDRMPR-----RDIISWNAMISGYFENGMCHEGLE 283
Query: 299 LIMQMR---VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYA 354
L MR V PD +++++C+L G +L +I D L+ +Y
Sbjct: 284 LFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYL 343
Query: 355 RAANWEGVAKLRKLM 369
A +W KL M
Sbjct: 344 NAGSWREAEKLFSRM 358
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/546 (36%), Positives = 311/546 (56%), Gaps = 36/546 (6%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
G H + LV++YS C A ++ D +P +L +++ + Y G ++ +++
Sbjct: 166 GLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVL 225
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121
+ V +N T+ +L+ S L + ++H ++R + +V ALI+MY KC
Sbjct: 226 RKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKC 285
Query: 122 SCVVNARQVFDKI---------------------------------LERDPSEATLVTVI 148
V+ A++VFD E P+E T ++
Sbjct: 286 GKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILL 345
Query: 149 SASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208
++ A+++ L QG LHG + + +V V ALV+MYAK G ++ AR F + + +V
Sbjct: 346 NSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIV 405
Query: 209 SWNAMITGYAMHGHSTKALDLFEKM--KDEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266
+WN MI+G + HG +AL+ F++M E+ P+ ITF+GVL ACS G ++G +F
Sbjct: 406 TWNTMISGCSHHGLGREALEAFDRMIFTGEI-PNRITFIGVLQACSHIGFVEQGLHYFNQ 464
Query: 267 MVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVK 326
+++ + + P +QHYTC+V LL +G +A D + ++ D W LLN+C + + +
Sbjct: 465 LMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYR 524
Query: 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK 386
L + E IE P+D+G YV+LSNI+A++ WEGVAK+R LM +RG+KK SWI ++
Sbjct: 525 LGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIR 584
Query: 387 NKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446
N+ H FL+ D HP IYAK+K + ++K GY P FHDV+ +++ + + HSE
Sbjct: 585 NQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSE 644
Query: 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGIC 506
+LA+A+GLI TP+ + L +TKN++ICDDCH AIK ISKI++R I +RD NR+HHF DG C
Sbjct: 645 KLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQC 704
Query: 507 SCGDYW 512
SC DYW
Sbjct: 705 SCCDYW 710
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 154/363 (42%), Gaps = 41/363 (11%)
Query: 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV 70
L++LY C A +LFD +P+RN+ W +++ Y +G ++L+ + G
Sbjct: 73 NSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGES 132
Query: 71 -PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQ 129
P+ F K+CS IEEG++ H ++ + FV L+ MY+ CS A +
Sbjct: 133 RPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIR 192
Query: 130 VFDKILERDPSEATLVTVISASADIAALPQGREL------HGFSWRH------------- 170
V D + D S + +S + A +G ++ F W +
Sbjct: 193 VLDDLPYCDLS--VFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNL 250
Query: 171 --------------RFELNVKVKT--ALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI 214
RF N +V+ AL++MY KCG V A+ +F+ + + ++
Sbjct: 251 RDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIM 310
Query: 215 TGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273
Y +AL+LF KM EV P+ TF +L++ + L +G + +V
Sbjct: 311 DAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDL-LHGLVLKSGY 369
Query: 274 DPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALE 333
V +V++ SG +++A M + D W +++ C HG + A A +
Sbjct: 370 RNHVMVGNALVNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMISGCSHHGLGREALEAFD 428
Query: 334 KLI 336
++I
Sbjct: 429 RMI 431
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 140/362 (38%), Gaps = 58/362 (16%)
Query: 68 GLVPDNFTFPFA-------LKACSALSAIEEGRRIHEDVIRNKWET---DVFVGAALIDM 117
LVP + PF LK C+ S + G IH +I + D + +LI++
Sbjct: 19 SLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINL 78
Query: 118 YAKCSCVVNARQVFDKILERD----------------------------------PSEAT 143
Y KC V AR++FD + ER+ P+E
Sbjct: 79 YVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFV 138
Query: 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203
V + ++ + +G++ HG ++ + V+ LV MY+ C A + + L
Sbjct: 139 ATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLP 198
Query: 204 EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRM 262
+ +++ ++GY G + LD+ K +E +++T++ L S +
Sbjct: 199 YCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQ 258
Query: 263 FFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLH 322
MVR + + V+ ++++ G G+ ++ RV D LN+ +
Sbjct: 259 VHSRMVR-FGFNAEVEACGALINMYGKCGK------VLYAQRVFDDTHAQNIFLNTTIMD 311
Query: 323 GHV--KLAELALEKLIELE----PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKK 376
+ K E AL +++ P + + IL N A + + L L++ G +
Sbjct: 312 AYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRN 371
Query: 377 SI 378
+
Sbjct: 372 HV 373
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/545 (37%), Positives = 309/545 (56%), Gaps = 46/545 (8%)
Query: 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLF--LWNVLIRAYAWNGPYEVAIELYYR 63
P + T L+ +Y C + +A ++F+ PQ + +N LI Y N A ++ R
Sbjct: 87 EPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRR 146
Query: 64 LLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123
+ E G+ D+ T + C+ + GR +H ++ +++V V + I MY KC
Sbjct: 147 MKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGS 206
Query: 124 VVNARQVFDKI-------------------LERD--------------PSEATLVTVISA 150
V R++FD++ L D P TLV+V+S+
Sbjct: 207 VEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSS 266
Query: 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSW 210
A + A G E+ + F NV V A + MYA+CG + AR +F+ + K +VSW
Sbjct: 267 CAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSW 326
Query: 211 NAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269
AMI Y MHG L LF+ M K ++PD FV VLSACS GL D+G F +M R
Sbjct: 327 TAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKR 386
Query: 270 DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAE 329
+Y ++P +HY+C+VDLLG +GRLDEA + I M V+PD VWGALL +CK+H +V +AE
Sbjct: 387 EYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAE 446
Query: 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKA 389
LA K+IE EP++ G YV++SNIY+ + N EG+ ++R +M +R +K S++E K +
Sbjct: 447 LAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRV 506
Query: 390 HAFLSGDASHPNCDEIYAKLKWLEGRMKE-AGYVPGTESVFHDVENDEKANMICC-HSER 447
H FL+GD SH +E++ L LE + E AG + D + E+ + HSER
Sbjct: 507 HLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM--------DCDRGEEVSSTTREHSER 558
Query: 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICS 507
LAIAFG++N+ GT +L+ KNL++C+DCH+ +K +SKI +R+ VRD +R+H+FKDG+CS
Sbjct: 559 LAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCS 618
Query: 508 CGDYW 512
C DYW
Sbjct: 619 CKDYW 623
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 168/352 (47%), Gaps = 48/352 (13%)
Query: 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100
WNV +R A+ + +I LY +L G PD F+FPF LK+C++LS G+++H V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATL---------------- 144
+ ET+ FV ALI MY KC V +AR+VF E +P + L
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVF----EENPQSSQLSVCYNALISGYTANSK 136
Query: 145 ---------------VTVISAS----ADIAALPQ----GRELHGFSWRHRFELNVKVKTA 181
V+V S + + +P+ GR LHG + + V V +
Sbjct: 137 VTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196
Query: 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPD 240
+ MY KCG V+ R LF+++ K +++WNA+I+GY+ +G + L+L+E+MK V PD
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
Query: 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLI 300
T V VLS+C+ G G + +V P+V + + G L +A +
Sbjct: 257 PFTLVSVLSSCAHLGAKKIGHEVGK-LVESNGFVPNVFVSNASISMYARCGNLAKARAVF 315
Query: 301 MQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE--LEPHDAGNYVILS 350
M VK W A++ +HG ++ + + +I+ + P A ++LS
Sbjct: 316 DIMPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLS 366
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 4 GFHP--VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF P ++ + +Y+ C L A +FD +P ++L W +I Y +G E+ + L+
Sbjct: 287 GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLF 346
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIR 101
+++ G+ PD F L ACS ++G + + R
Sbjct: 347 DDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKR 386
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/577 (34%), Positives = 316/577 (54%), Gaps = 71/577 (12%)
Query: 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLE 66
P + T + +Y++C ++ A +FD + R++ WN +I Y G + A +L+ + +
Sbjct: 146 PFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKD 205
Query: 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD------------------- 107
++PD + AC + R I+E +I N D
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDM 265
Query: 108 ------------VFVGAALIDMYAKCSCVVNARQVFDKILERD----------------P 139
+FV A++ Y+KC + +A+ +FD+ ++D P
Sbjct: 266 AREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYP 325
Query: 140 SEA-----------------TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL 182
EA ++ +VISA A++ L + + +H + E + + AL
Sbjct: 326 QEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNAL 385
Query: 183 VDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDH 241
++MYAKCG + R++FE++ + VVSW++MI +MHG ++ AL LF +MK E V+P+
Sbjct: 386 INMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNE 445
Query: 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301
+TFVGVL CS GL +EG+ F SM +Y+I P ++HY CMVDL G + L EA ++I
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505
Query: 302 QMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEG 361
M V + +WG+L+++C++HG ++L + A ++++ELEP G V++SNIYAR WE
Sbjct: 506 SMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWED 565
Query: 362 VAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGY 421
V +R++M ++ + K S I+ K+H FL GD H +EIYAKL + ++K AGY
Sbjct: 566 VRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGY 625
Query: 422 VPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTR------LLITKNLKICDDC 475
VP SV DVE +EK +++ HSE+LA+ FGL+N + I KNL++C+DC
Sbjct: 626 VPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDC 685
Query: 476 HIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
H+ K +SK+ EREI VRD R+H +K+G+CSC DYW
Sbjct: 686 HLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 159/387 (41%), Gaps = 74/387 (19%)
Query: 26 AHQLFDRIPQR-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84
A +F IP ++N +R + + I Y R+ +G D F+F LKA S
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD------ 138
+SA+ EG +H + D FV +DMYA C + AR VFD++ RD
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 139 ---------------------------PSEATLVTVISASADIAALPQGRELHGFSWRHR 171
P E L ++SA + R ++ F +
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242
Query: 172 FELNVKVKTALVDMYA-------------------------------KCGLVKVARNLFE 200
++ + TALV MYA KCG + A+ +F+
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302
Query: 201 QLREKRVVSWNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDE 259
Q +K +V W MI+ Y + +AL +FE+M ++PD ++ V+SAC+ G+ D+
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDK 362
Query: 260 GRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGV--WGALLN 317
+ + S + ++ + ++++ G LD D+ +M P V W +++N
Sbjct: 363 AK-WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM---PRRNVVSWSSMIN 418
Query: 318 SCKLHGHVK--LAELALEKLIELEPHD 342
+ +HG L+ A K +EP++
Sbjct: 419 ALSMHGEASDALSLFARMKQENVEPNE 445
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 128/259 (49%), Gaps = 20/259 (7%)
Query: 143 TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202
+ + ++ A + ++AL +G ELHG +++ + V+T +DMYA CG + ARN+F+++
Sbjct: 113 SFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEM 172
Query: 203 REKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGR 261
+ VV+WN MI Y G +A LFE+MKD V PD + ++SAC R G R
Sbjct: 173 SHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNR 232
Query: 262 MFFESMVR-DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCK 320
+E ++ D +D + T +V + +G +D A + +M V+ +++
Sbjct: 233 AIYEFLIENDVRMDTHL--LTALVTMYAGAGCMDMAREFFRKMSVR------NLFVSTAM 284
Query: 321 LHGHVKLAELALEKLI--ELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378
+ G+ K L ++I + E D + + + Y + + ++ + M GIK +
Sbjct: 285 VSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDV 344
Query: 379 --------ACSWIEVKNKA 389
AC+ + + +KA
Sbjct: 345 VSMFSVISACANLGILDKA 363
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/535 (37%), Positives = 301/535 (56%), Gaps = 37/535 (6%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD 72
+VH Y + +A +LF ++P +N+ W +I N A++L+ +L +
Sbjct: 165 MVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKST 224
Query: 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD 132
+ F + AC+ A G ++H +I+ + + +V A+LI YA C + ++R+VFD
Sbjct: 225 SRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFD 284
Query: 133 KILERD---------------------------------PSEATLVTVISASADIAALPQ 159
+ + P+++T + +++ + + L
Sbjct: 285 EKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDW 344
Query: 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAM 219
G+E+HG + + E + V +LV MY+ G V A ++F ++ +K +VSWN++I G A
Sbjct: 345 GKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQ 404
Query: 220 HGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDY-HIDPSV 277
HG A +F +M + +PD ITF G+LSACS G ++GR F M HID +
Sbjct: 405 HGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKI 464
Query: 278 QHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE 337
QHYTCMVD+LG G+L EA +LI +M VKP+ VW ALL++C++H V E A +
Sbjct: 465 QHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFN 524
Query: 338 LEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDA 397
L+ + YV+LSNIYA A W V+KLR M GI K SW+ ++ K H F SGD
Sbjct: 525 LDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGD- 583
Query: 398 SHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINT 457
P+C IY KL++L ++KE GY P S HDVE+++K M+ HSERLAIAFGLINT
Sbjct: 584 -QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINT 642
Query: 458 PDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
+G+ + + KNL++C+DCH IK IS + REI +RD R+HHFK+G CSCGDYW
Sbjct: 643 VEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 149/320 (46%), Gaps = 17/320 (5%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+GF + ++ L+ Y+ C + ++ ++FD + +W L+ Y+ N +E A+ +
Sbjct: 254 LGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSI 313
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ +L ++P+ TF L +CSAL ++ G+ +H ++ ETD FVG +L+ MY+
Sbjct: 314 FSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSD 373
Query: 121 CSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT 180
V +A VF KI ++ S + ++I A + G R E + T
Sbjct: 374 SGNVNDAVSVFIKIFKK--SIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFT 431
Query: 181 ALVDMYAKCGLVKVARNLFEQLR------EKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234
L+ + CG ++ R LF + ++++ + M+ G +A +L E+M
Sbjct: 432 GLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMV 491
Query: 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL 293
V+P+ + ++ +LSAC D G ++ +++D S Y + ++ +GR
Sbjct: 492 --VKPNEMVWLALLSACRMHSDVDRGE---KAAAAIFNLDSKSSAAYVLLSNIYASAGRW 546
Query: 294 DEACDLIMQMR---VKPDPG 310
L ++M+ + PG
Sbjct: 547 SNVSKLRVKMKKNGIMKKPG 566
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 159/374 (42%), Gaps = 48/374 (12%)
Query: 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL 65
H L TK++ Y+ + L +A LFD +P R++ WN +I G A++L+ +
Sbjct: 65 HVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMP 124
Query: 66 EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVV 125
E +V ++ + C +++ R+ + D +++ Y + V
Sbjct: 125 ERSVV----SWTAMVNGCFRSGKVDQAERLFYQMPVK----DTAAWNSMVHGYLQFGKVD 176
Query: 126 NARQVFDKILERD---------------------------------PSEATLVTVISASA 152
+A ++F ++ ++ + VI+A A
Sbjct: 177 DALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACA 236
Query: 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212
+ A G ++HG + F V +L+ YA C + +R +F++ ++V W A
Sbjct: 237 NAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTA 296
Query: 213 MITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR-D 270
+++GY+++ AL +F M ++ + P+ TF L++CS G D G+ V+
Sbjct: 297 LLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLG 356
Query: 271 YHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAEL 330
D V + +V + SG +++A + +++ K W +++ C HG K A +
Sbjct: 357 LETDAFVGN--SLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFV 413
Query: 331 ALEKLIEL--EPHD 342
++I L EP +
Sbjct: 414 IFGQMIRLNKEPDE 427
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 195 ARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254
AR +F Q+ V + MITGY AL+LF++M D +++ ++S C
Sbjct: 54 AREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVR---DVVSWNSMISGCVEC 110
Query: 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGA 314
G + F+ M + SV +T MV+ SG++D+A L QM VK D W +
Sbjct: 111 GDMNTAVKLFDEMP-----ERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVK-DTAAWNS 164
Query: 315 LLNSCKLHGHVKLAEL 330
+ +HG+++ ++
Sbjct: 165 M-----VHGYLQFGKV 175
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/544 (34%), Positives = 308/544 (56%), Gaps = 34/544 (6%)
Query: 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYY 62
F + + + L+ +Y+ L A + R +++ W +I Y + A+ +
Sbjct: 521 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 580
Query: 63 RLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122
++L+ G+ D A+ AC+ L A++EG++IH + + +D+ AL+ +Y++C
Sbjct: 581 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640
Query: 123 CVVNARQVFDKI------------------------------LER---DPSEATLVTVIS 149
+ + F++ + R D + T + +
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700
Query: 150 ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209
A+++ A + QG+++H + ++ +V AL+ MYAKCG + A F ++ K VS
Sbjct: 701 AASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 760
Query: 210 WNAMITGYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268
WNA+I Y+ HG ++ALD F++M V+P+H+T VGVLSACS GL D+G +FESM
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820
Query: 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328
+Y + P +HY C+VD+L +G L A + I +M +KPD VW LL++C +H ++++
Sbjct: 821 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880
Query: 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNK 388
E A L+ELEP D+ YV+LSN+YA + W+ R+ M ++G+KK SWIEVKN
Sbjct: 881 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940
Query: 389 AHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERL 448
H+F GD +HP DEI+ + L R E GYV S+ +++++++K +I HSE+L
Sbjct: 941 IHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKL 1000
Query: 449 AIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSC 508
AI+FGL++ P + + KNL++C+DCH IKF+SK++ REI VRD R+HHF+ G CSC
Sbjct: 1001 AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSC 1060
Query: 509 GDYW 512
DYW
Sbjct: 1061 KDYW 1064
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 170/372 (45%), Gaps = 40/372 (10%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+GF + + L++LY+ C + A F N+ LWNV++ AY + +
Sbjct: 418 LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 477
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
+ ++ +VP+ +T+P LK C L +E G +IH +I+ ++ + +V + LIDMYAK
Sbjct: 478 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK 537
Query: 121 CS-----------------------------------CVVNARQVFDKILERDPSEATLV 145
+ RQ+ D+ + D E L
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD--EVGLT 595
Query: 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205
+SA A + AL +G+++H + F ++ + ALV +Y++CG ++ + FEQ
Sbjct: 596 NAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAG 655
Query: 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFF 264
++WNA+++G+ G++ +AL +F +M E + ++ TF + A S +G+
Sbjct: 656 DNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-V 714
Query: 265 ESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGH 324
+++ D + ++ + G + +A +++ K + W A++N+ HG
Sbjct: 715 HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHGF 773
Query: 325 VKLAELALEKLI 336
A + +++I
Sbjct: 774 GSEALDSFDQMI 785
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 160/345 (46%), Gaps = 40/345 (11%)
Query: 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67
V+ L+ LYS + A ++FD + ++ W +I + N AI L+ + +
Sbjct: 223 VVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL 282
Query: 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNA 127
G++P + F L AC + ++E G ++H V++ + +D +V AL+ +Y +++A
Sbjct: 283 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISA 342
Query: 128 RQVFDKILERD---------------------------------PSEATLVTVISASADI 154
+F + +RD P TL +++ A +
Sbjct: 343 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 402
Query: 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI 214
L +G++LH ++ + F N K++ AL+++YAKC ++ A + F + + VV WN M+
Sbjct: 403 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462
Query: 215 TGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273
Y + + +F +M+ +E+ P+ T+ +L C R G + G +++
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---T 519
Query: 274 DPSVQHYTC--MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316
+ + Y C ++D+ G+LD A D++++ K D W ++
Sbjct: 520 NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMI 563
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 171/405 (42%), Gaps = 68/405 (16%)
Query: 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL 60
+G + L+ KL Y L+ A ++FD +P+R +F WN +I+ A L
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGL 173
Query: 61 YYRLLEIGLVPDNFTFPFALKACSALS-AIEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119
+ R++ + P+ TF L+AC S A + +IH ++ V LID+Y+
Sbjct: 174 FVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYS 233
Query: 120 KCSCVVNARQVFDKILERD---------------------------------PSEATLVT 146
+ V AR+VFD + +D P+ +
Sbjct: 234 RNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 293
Query: 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206
V+SA I +L G +LHG + F + V ALV +Y G + A ++F + ++
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353
Query: 207 VVSWNAMITGYAMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265
V++N +I G + G+ KA++LF++M D ++PD T ++ ACS G G+
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 266 SMVR---------------------------DYHIDPSVQHYTCMVDLLGHSGRLDE--- 295
+ DY ++ V++ +L G LD+
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 473
Query: 296 ACDLIMQMRVK---PDPGVWGALLNSCKLHGHVKLAELALEKLIE 337
+ + QM+++ P+ + ++L +C G ++L E ++I+
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 518
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 43/329 (13%)
Query: 68 GLVPDNFTFPFALKAC-SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
G+ P++ T + L+ C +++EGR++H +++ +++ + L D Y +
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 127 ARQVFDKILER---------------------------------DPSEATLVTVISA-SA 152
A +VFD++ ER P+E T V+ A
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212
A ++H + V L+D+Y++ G V +AR +F+ LR K SW A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258
Query: 213 MITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDY 271
MI+G + + +A+ LF M + P F VLSAC + + G +++
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK-- 316
Query: 272 HIDPSVQHYTC--MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAE 329
+ S Y C +V L H G L A + M + D + L+N G+ + A
Sbjct: 317 -LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLINGLSQCGYGEKA- 373
Query: 330 LALEKLIELEPHDAGNYVILSNIYARAAN 358
+ L K + L+ + + + S + A +A+
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSAD 402
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/524 (38%), Positives = 295/524 (56%), Gaps = 37/524 (7%)
Query: 26 AHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLL--EIGLVPDNFTFPFALKAC 83
A +LFD +P+R+L WN LI Y+ G E+ R++ E+G P+ TF + AC
Sbjct: 85 AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144
Query: 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI--------- 134
+ EEGR IH V++ +V V A I+ Y K + ++ ++F+ +
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204
Query: 135 ------------------------LERDPSEATLVTVISASADIAALPQGRELHGFSWRH 170
+ +P +AT + V+ + D+ + + +HG
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264
Query: 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230
F N + TAL+D+Y+K G ++ + +F ++ ++W AM+ YA HG A+ F
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324
Query: 231 EKMKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH 289
E M + PDH+TF +L+ACS GL +EG+ +FE+M + Y IDP + HY+CMVDLLG
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384
Query: 290 SGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349
SG L +A LI +M ++P GVWGALL +C+++ +L A E+L ELEP D NYV+L
Sbjct: 385 SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444
Query: 350 SNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKL 409
SNIY+ + W+ +++R LM +G+ ++ CS+IE NK H F+ GD SHP ++I KL
Sbjct: 445 SNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKL 504
Query: 410 KWLEGRMK-EAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKN 468
K + +MK E GY TE V HDV D K MI HSE++A+AFGL+ ++I KN
Sbjct: 505 KEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKN 564
Query: 469 LKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
L+IC DCH K IS I +R I +RD R+HHF DG CSC DYW
Sbjct: 565 LRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 48/231 (20%)
Query: 141 EATLVTVISASADIAALPQGRELH-----GFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195
+A + ++I+A ++ R LH S+RH F + LV Y + G A
Sbjct: 31 DANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGF-----IGDQLVGCYLRLGHDVCA 85
Query: 196 RNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK-DEV--QPDHITFVGVLSACS 252
LF+++ E+ +VSWN++I+GY+ G+ K ++ +M EV +P+ +TF+ ++SAC
Sbjct: 86 EKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACV 145
Query: 253 RGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVK------ 306
GG +EGR +V + + V+ ++ G +G L +C L + +K
Sbjct: 146 YGGSKEEGRC-IHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204
Query: 307 ----------------------------PDPGVWGALLNSCKLHGHVKLAE 329
PD + A+L SC+ G V+LA+
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQ 255
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 136/311 (43%), Gaps = 35/311 (11%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD 72
++ Y L ++ +LF+ + +NL WN +I + NG E + + +G PD
Sbjct: 175 FINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPD 234
Query: 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD 132
TF L++C + + + IH ++ + + + AL+D+Y+K + ++ VF
Sbjct: 235 QATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFH 294
Query: 133 KILERDPSEATLVTVISASADIAALPQGRELHGF---SWRHRFELNVKVK--------TA 181
+I D T + A+ HGF + +H FEL V T
Sbjct: 295 EITSPDSMAWTAMLAAYAT------------HGFGRDAIKH-FELMVHYGISPDHVTFTH 341
Query: 182 LVDMYAKCGLVKVARNLFEQLREK-----RVVSWNAMITGYAMHGHSTKALDLFEKMKDE 236
L++ + GLV+ ++ FE + ++ R+ ++ M+ G A L ++M
Sbjct: 342 LLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMP-- 399
Query: 237 VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDE 295
++P + +L AC ++ + ++ ++ R + ++P ++Y + ++ SG +
Sbjct: 400 MEPSSGVWGALLGACR---VYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKD 456
Query: 296 ACDLIMQMRVK 306
A + M+ K
Sbjct: 457 ASRIRNLMKQK 467
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 13/226 (5%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF + + T L+ LYS L ++ +F I + W ++ AYA +G AI+ +
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324
Query: 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVG--AALIDMYA 119
++ G+ PD+ TF L ACS +EEG+ E + ++ D + + ++D+
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFE-TMSKRYRIDPRLDHYSCMVDLLG 383
Query: 120 KCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFEL---NV 176
+ + +A + K + +PS ++ A + + +L + FEL +
Sbjct: 384 RSGLLQDAYGLI-KEMPMEPSSGVWGALLGA----CRVYKDTQLGTKAAERLFELEPRDG 438
Query: 177 KVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGH 222
+ L ++Y+ GL K A + +++K +V A Y HG+
Sbjct: 439 RNYVMLSNIYSASGLWKDASRIRNLMKQKGLV--RASGCSYIEHGN 482
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/558 (35%), Positives = 315/558 (56%), Gaps = 66/558 (11%)
Query: 21 DCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80
+ L A+ +F +I NLF++N+LIR ++ A Y ++L+ + PDN TFPF +
Sbjct: 65 NLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLI 124
Query: 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA--------------------- 119
KA S + + G + H ++R ++ DV+V +L+ MYA
Sbjct: 125 KASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVV 184
Query: 120 ----------KCSCVVNARQVFDKILERD------------------------------- 138
KC V NAR++FD++ R+
Sbjct: 185 SWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREG 244
Query: 139 --PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196
+E +V+VIS+ A + AL G + + + +N+ + TALVDM+ +CG ++ A
Sbjct: 245 VVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAI 304
Query: 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD-EVQPDHITFVGVLSACSRGG 255
++FE L E +SW+++I G A+HGH+ KA+ F +M P +TF VLSACS GG
Sbjct: 305 HVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGG 364
Query: 256 LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL 315
L ++G +E+M +D+ I+P ++HY C+VD+LG +G+L EA + I++M VKP+ + GAL
Sbjct: 365 LVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGAL 424
Query: 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375
L +CK++ + ++AE LI+++P +G YV+LSNIYA A W+ + LR +M ++ +K
Sbjct: 425 LGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484
Query: 376 KSIACSWIEVKNKAHAFLSG-DASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVEN 434
K S IE+ K + F G D HP +I K + + G+++ GY T F DV+
Sbjct: 485 KPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDE 544
Query: 435 DEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRD 494
+EK + I HSE+LAIA+G++ T GT + I KNL++C+DCH K IS++ RE+ VRD
Sbjct: 545 EEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRD 604
Query: 495 VNRYHHFKDGICSCGDYW 512
NR+HHF++G+CSC DYW
Sbjct: 605 RNRFHHFRNGVCSCRDYW 622
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 25/226 (11%)
Query: 163 LHGFSWRHRFELNVKVKTALVDM-------YAKCGLVKVARNLFEQLREKRVVSWNAMIT 215
+HGF R +V V + L+ + L+ A +F Q++ + +N +I
Sbjct: 31 IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIR 90
Query: 216 GYAMHGHSTKALDLFEKM-KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR----- 269
++ +KA + +M K + PD+ITF ++ A S G +VR
Sbjct: 91 CFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQN 150
Query: 270 DYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNS-CKLHGHVKLA 328
D +++ S+ H + +GR + QM + D W +++ CK +
Sbjct: 151 DVYVENSLVHMYANCGFIAAAGR------IFGQMGFR-DVVSWTSMVAGYCK----CGMV 199
Query: 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374
E A E E+ + + I+ N YA+ +E L + M G+
Sbjct: 200 ENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/581 (34%), Positives = 313/581 (53%), Gaps = 81/581 (13%)
Query: 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRL-------- 64
LV +Y+ C + A+ +F + +++ WN ++ Y+ G +E A+ L+ ++
Sbjct: 270 LVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMD 329
Query: 65 ---------------------------LEIGLVPDNFTFPFALKACSALSAIEEGRRIH- 96
L G+ P+ T L C+++ A+ G+ IH
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHC 389
Query: 97 ------EDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL--ERD---------- 138
D+ +N + V LIDMYAKC V AR +FD + ERD
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGG 449
Query: 139 -------------------------PSEATLVTVISASADIAALPQGRELHGFSWRHRFE 173
P+ T+ + A A +AAL G+++H ++ R++
Sbjct: 450 YSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509
Query: 174 -LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232
+ + V L+DMYAKCG + AR +F+ + K V+W +++TGY MHG+ +AL +F++
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569
Query: 233 MKD-EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG 291
M+ + D +T + VL ACS G+ D+G +F M + + P +HY C+VDLLG +G
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAG 629
Query: 292 RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351
RL+ A LI +M ++P P VW A L+ C++HG V+L E A EK+ EL + G+Y +LSN
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSN 689
Query: 352 IYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKW 411
+YA A W+ V ++R LM +G+KK CSW+E F GD +HP+ EIY L
Sbjct: 690 LYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLD 749
Query: 412 LEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLINTPDGTRLLITKNLKI 471
R+K+ GYVP T HDV+++EK +++ HSE+LA+A+G++ TP G + ITKNL++
Sbjct: 750 HMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRV 809
Query: 472 CDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512
C DCH A ++S+I + +I +RD +R+HHFK+G CSC YW
Sbjct: 810 CGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 37/285 (12%)
Query: 9 LATKLVHLYSACDCLHNAHQLFDRIPQRN--LFLWNVLIRAYAWNGPYEVAIELYYRLLE 66
L + L+ Y + CL +A L R P + ++ WN LIR+Y NG + L+ +
Sbjct: 61 LTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHS 120
Query: 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126
+ PDN+TFPF KAC +S++ G H + + ++VFVG AL+ MY++C + +
Sbjct: 121 LSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSD 180
Query: 127 ARQVFDKILERD----------------------------------PSEATLVTVISASA 152
AR+VFD++ D P TLV V+ A
Sbjct: 181 ARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCA 240
Query: 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212
+ G++LH F+ N+ V LVDMYAKCG++ A +F + K VVSWNA
Sbjct: 241 SLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNA 300
Query: 213 MITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGL 256
M+ GY+ G A+ LFEKM++E ++ D +T+ +S ++ GL
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 55/355 (15%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY 61
GF + + LV +YS C L +A ++FD + ++ WN +I +YA G +VA+E++
Sbjct: 157 GFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216
Query: 62 YRLL-EIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120
R+ E G PDN T L C++L G+++H + ++ ++FVG L+DMYAK
Sbjct: 217 SRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276
Query: 121 CSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT 180
C + A VF + +D V+S +A +A G+S RFE V+
Sbjct: 277 CGMMDEANTVFSNMSVKD--------VVSWNAMVA---------GYSQIGRFEDAVR--- 316
Query: 181 ALVDMYAKCGLVKVARNLFEQLREKR----VVSWNAMITGYAMHGHSTKALDLFEKM-KD 235
LFE+++E++ VV+W+A I+GYA G +AL + +M
Sbjct: 317 -----------------LFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359
Query: 236 EVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHY-------TCMVDLLG 288
++P+ +T + VLS C+ G G+ ++ Y ID + ++D+
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIK-YPIDLRKNGHGDENMVINQLIDMYA 418
Query: 289 HSGRLDEACDLIMQMRVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342
++D A + + K D W ++ HG A ALE L E+ D
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD---ANKALELLSEMFEED 470
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 27/326 (8%)
Query: 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIE 59
G G ++ +L+ +Y+ C + A +FD + +R++ W V+I Y+ +G A+E
Sbjct: 402 GHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALE 461
Query: 60 LYYRLLE--IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWE-TDVFVGAALID 116
L + E P+ FT AL AC++L+A+ G++IH +RN+ +FV LID
Sbjct: 462 LLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLID 521
Query: 117 MYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHG-FSWRHRFELN 175
MYAKC + +AR VFD ++ ++ VT S G E G F R
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNE-----VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFK 576
Query: 176 VKVKTALVDMYA--KCGLVKVARNLFEQLREKRVVS-----WNAMITGYAMHGHSTKALD 228
+ T LV +YA G++ F +++ VS + ++ G AL
Sbjct: 577 LDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALR 636
Query: 229 LFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR-DYHIDPSVQHYTCMVDLL 287
L E+M ++P + +V LS C G + G E + + D S YT + +L
Sbjct: 637 LIEEMP--MEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGS---YTLLSNLY 691
Query: 288 GHSGRLDEACDLIMQMR---VKPDPG 310
++GR + + MR VK PG
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPG 717
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 123/274 (44%), Gaps = 19/274 (6%)
Query: 113 ALIDMYAKCSCVVNARQVFDKI--LERDPSEATLVTVISASADIAALPQGRELHGFSWRH 170
+LI Y C +F + L P T V A +I+++ G H S
Sbjct: 97 SLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVT 156
Query: 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230
F NV V ALV MY++C + AR +F+++ VVSWN++I YA G AL++F
Sbjct: 157 GFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216
Query: 231 EKMKDEV--QPDHITFVGVLSACSRGGLFDEGRMFF-----ESMVRDYHIDPSVQHYTCM 283
+M +E +PD+IT V VL C+ G G+ M+++ + C+
Sbjct: 217 SRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVG------NCL 270
Query: 284 VDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHD 342
VD+ G +DEA + M VK D W A++ G + A EK+ E + D
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMD 329
Query: 343 AGNYVILSNIYA-RAANWEGVAKLRKLMIDRGIK 375
+ + YA R +E + R+ M+ GIK
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQ-MLSSGIK 362
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,882,066
Number of Sequences: 539616
Number of extensions: 8095816
Number of successful extensions: 27862
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 22523
Number of HSP's gapped (non-prelim): 2299
length of query: 512
length of database: 191,569,459
effective HSP length: 122
effective length of query: 390
effective length of database: 125,736,307
effective search space: 49037159730
effective search space used: 49037159730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)