Query 043142
Match_columns 512
No_of_seqs 697 out of 3502
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 13:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-109 4E-114 869.3 57.9 512 1-512 152-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 6E-105 1E-109 854.1 57.8 508 1-510 317-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 5.5E-65 1.2E-69 545.6 36.2 490 2-505 116-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5E-60 1.1E-64 499.0 44.9 480 4-490 403-911 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.4E-58 5.2E-63 483.1 39.7 477 5-505 85-581 (697)
6 PLN03218 maturation of RBCL 1; 100.0 4.1E-56 9E-61 469.3 45.5 375 4-379 434-848 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 5.3E-30 1.2E-34 199.5 8.5 106 379-502 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 5.1E-24 1.1E-28 232.9 43.0 362 6-374 498-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.5E-23 7.7E-28 226.2 42.8 363 7-374 431-801 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 2E-21 4.4E-26 183.6 26.6 360 8-374 117-487 (966)
11 PRK11788 tetratricopeptide rep 99.9 1.4E-20 3.1E-25 185.3 32.4 294 46-379 43-354 (389)
12 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.8E-25 184.0 31.5 293 14-339 42-348 (389)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-18 3.6E-23 179.7 41.4 357 10-372 130-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 1.2E-18 2.5E-23 180.5 38.6 321 44-371 48-380 (656)
15 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.4E-23 179.5 39.5 342 13-372 48-403 (656)
16 KOG4626 O-linked N-acetylgluco 99.9 5.5E-19 1.2E-23 167.4 27.2 350 7-363 150-510 (966)
17 PRK11447 cellulose synthase su 99.8 1.7E-17 3.7E-22 183.4 41.9 354 13-375 275-744 (1157)
18 PRK11447 cellulose synthase su 99.8 2.5E-17 5.4E-22 182.1 43.0 362 9-372 237-700 (1157)
19 PRK10049 pgaA outer membrane p 99.8 6.5E-17 1.4E-21 171.1 41.5 363 7-373 15-457 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-16 3.3E-21 165.2 39.0 336 3-342 156-575 (615)
21 PRK10049 pgaA outer membrane p 99.8 3.2E-16 7E-21 165.8 36.1 332 38-373 15-423 (765)
22 PRK09782 bacteriophage N4 rece 99.8 5.7E-15 1.2E-19 156.8 40.3 214 155-373 490-707 (987)
23 PRK14574 hmsH outer membrane p 99.8 5.1E-14 1.1E-18 146.6 42.3 351 16-372 43-479 (822)
24 PRK14574 hmsH outer membrane p 99.7 1.1E-13 2.4E-18 144.1 41.5 359 12-373 73-514 (822)
25 PRK09782 bacteriophage N4 rece 99.7 1.2E-13 2.6E-18 146.8 36.2 348 21-375 356-743 (987)
26 KOG1155 Anaphase-promoting com 99.6 7.8E-13 1.7E-17 122.2 28.6 286 79-371 233-535 (559)
27 PF13429 TPR_15: Tetratricopep 99.6 2.8E-15 6.1E-20 140.1 11.9 253 113-370 13-275 (280)
28 KOG4422 Uncharacterized conser 99.6 8.5E-12 1.8E-16 114.3 33.7 339 32-375 201-593 (625)
29 KOG2003 TPR repeat-containing 99.6 4.8E-13 1E-17 123.1 24.9 314 40-359 278-710 (840)
30 KOG2076 RNA polymerase III tra 99.6 6.2E-12 1.4E-16 125.4 34.4 328 52-382 153-522 (895)
31 PRK10747 putative protoheme IX 99.6 1.2E-12 2.6E-17 128.1 29.5 280 51-339 97-391 (398)
32 PRK10747 putative protoheme IX 99.6 5E-12 1.1E-16 123.8 33.2 277 86-371 97-389 (398)
33 KOG1126 DNA-binding cell divis 99.6 2.8E-13 6.1E-18 130.8 22.7 280 88-375 334-623 (638)
34 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 122.2 33.7 296 40-337 84-398 (409)
35 KOG0495 HAT repeat protein [RN 99.6 7.7E-11 1.7E-15 113.5 37.9 368 8-384 517-890 (913)
36 KOG4422 Uncharacterized conser 99.6 2.2E-11 4.8E-16 111.6 31.9 329 4-339 204-591 (625)
37 KOG2002 TPR-containing nuclear 99.6 1.7E-11 3.6E-16 123.2 33.6 363 5-374 268-677 (1018)
38 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.3E-19 135.2 11.1 48 85-134 56-103 (280)
39 KOG1126 DNA-binding cell divis 99.5 8.3E-13 1.8E-17 127.6 21.4 197 143-343 423-625 (638)
40 KOG0547 Translocase of outer m 99.5 1.3E-11 2.9E-16 114.9 28.2 213 154-370 339-564 (606)
41 KOG2002 TPR-containing nuclear 99.5 8.3E-12 1.8E-16 125.3 28.3 269 102-374 446-747 (1018)
42 KOG1915 Cell cycle control pro 99.5 5.8E-11 1.3E-15 110.2 31.6 358 19-382 85-510 (677)
43 TIGR00540 hemY_coli hemY prote 99.5 1.4E-11 3E-16 121.3 28.7 281 19-303 96-396 (409)
44 KOG2076 RNA polymerase III tra 99.5 1.4E-10 3.1E-15 115.9 33.3 351 20-373 152-556 (895)
45 KOG1173 Anaphase-promoting com 99.5 3E-11 6.4E-16 114.7 27.1 263 104-370 240-516 (611)
46 KOG1155 Anaphase-promoting com 99.5 3.5E-10 7.5E-15 105.0 31.5 322 37-371 163-494 (559)
47 KOG0495 HAT repeat protein [RN 99.5 7.6E-10 1.7E-14 106.8 33.9 365 13-383 412-791 (913)
48 COG2956 Predicted N-acetylgluc 99.4 1.8E-10 3.8E-15 102.2 25.8 264 50-317 47-323 (389)
49 COG3071 HemY Uncharacterized e 99.4 9.3E-10 2E-14 100.7 31.0 279 51-336 97-388 (400)
50 TIGR02521 type_IV_pilW type IV 99.4 5.3E-11 1.1E-15 108.0 23.7 199 174-372 29-232 (234)
51 COG2956 Predicted N-acetylgluc 99.4 3.8E-10 8.2E-15 100.2 26.0 290 86-380 48-355 (389)
52 COG3071 HemY Uncharacterized e 99.4 2E-09 4.4E-14 98.5 29.1 276 85-370 96-388 (400)
53 PF13041 PPR_2: PPR repeat fam 99.4 1.6E-12 3.5E-17 85.8 5.7 50 36-85 1-50 (50)
54 KOG1915 Cell cycle control pro 99.3 2.5E-08 5.5E-13 93.1 34.7 347 20-372 154-536 (677)
55 PRK12370 invasion protein regu 99.3 4E-10 8.7E-15 115.3 25.1 243 122-373 275-536 (553)
56 KOG1840 Kinesin light chain [C 99.3 7E-10 1.5E-14 108.5 24.6 190 181-370 246-477 (508)
57 KOG4162 Predicted calmodulin-b 99.3 1.8E-08 3.8E-13 99.6 33.0 368 3-373 319-784 (799)
58 TIGR02521 type_IV_pilW type IV 99.3 9.4E-10 2E-14 99.7 23.2 192 107-301 30-227 (234)
59 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 112.1 24.9 256 74-339 257-536 (553)
60 KOG4318 Bicoid mRNA stability 99.3 1.7E-10 3.8E-15 114.7 16.9 250 139-427 23-273 (1088)
61 KOG0547 Translocase of outer m 99.3 1.2E-08 2.5E-13 95.7 27.6 214 121-339 339-567 (606)
62 KOG1174 Anaphase-promoting com 99.3 1.7E-07 3.7E-12 86.3 34.2 362 7-372 97-500 (564)
63 KOG2003 TPR repeat-containing 99.2 1.9E-09 4.2E-14 99.7 21.1 150 219-372 536-689 (840)
64 PF13041 PPR_2: PPR repeat fam 99.2 2.5E-11 5.4E-16 80.1 6.4 49 205-253 1-50 (50)
65 KOG1129 TPR repeat-containing 99.2 1.3E-09 2.7E-14 96.9 18.9 229 112-374 227-460 (478)
66 PF12569 NARP1: NMDA receptor- 99.2 4E-08 8.7E-13 97.5 30.5 283 46-337 12-333 (517)
67 PRK11189 lipoprotein NlpI; Pro 99.2 4.3E-09 9.3E-14 98.7 22.2 213 155-374 40-267 (296)
68 KOG1173 Anaphase-promoting com 99.2 2E-08 4.4E-13 95.8 25.7 278 36-322 242-535 (611)
69 COG3063 PilF Tfp pilus assembl 99.1 6.3E-09 1.4E-13 88.4 18.0 163 209-374 37-204 (250)
70 PRK11189 lipoprotein NlpI; Pro 99.1 2.5E-08 5.4E-13 93.6 23.7 213 52-269 40-264 (296)
71 KOG1840 Kinesin light chain [C 99.1 2.7E-08 5.8E-13 97.6 23.8 231 107-337 198-478 (508)
72 KOG1174 Anaphase-promoting com 99.1 1.2E-07 2.5E-12 87.3 26.0 292 48-345 206-507 (564)
73 KOG1129 TPR repeat-containing 99.1 8.6E-09 1.9E-13 91.7 17.5 222 42-267 227-455 (478)
74 KOG4318 Bicoid mRNA stability 99.1 3.5E-08 7.6E-13 98.8 23.2 341 1-365 19-401 (1088)
75 PF12569 NARP1: NMDA receptor- 99.0 4.5E-07 9.7E-12 90.2 28.9 286 80-371 11-333 (517)
76 KOG3785 Uncharacterized conser 99.0 2.5E-07 5.5E-12 83.4 21.4 163 17-183 32-226 (557)
77 COG3063 PilF Tfp pilus assembl 99.0 2.7E-07 5.8E-12 78.7 20.2 195 144-342 38-240 (250)
78 KOG0548 Molecular co-chaperone 98.9 1.8E-06 4E-11 82.4 27.6 350 16-373 11-456 (539)
79 cd05804 StaR_like StaR_like; a 98.9 5.9E-06 1.3E-10 80.3 32.5 193 181-373 119-337 (355)
80 KOG2047 mRNA splicing factor [ 98.9 1.5E-05 3.2E-10 77.8 33.8 358 7-370 102-613 (835)
81 PF04733 Coatomer_E: Coatomer 98.9 9.3E-08 2E-12 88.5 18.5 155 182-342 108-269 (290)
82 KOG2376 Signal recognition par 98.9 5.4E-06 1.2E-10 80.1 29.6 143 223-369 357-517 (652)
83 PRK04841 transcriptional regul 98.9 6.9E-06 1.5E-10 90.3 35.4 363 11-373 345-761 (903)
84 cd05804 StaR_like StaR_like; a 98.9 1.4E-05 3E-10 77.7 33.0 190 147-338 120-336 (355)
85 KOG2047 mRNA splicing factor [ 98.9 1.4E-05 3.1E-10 78.0 31.7 174 21-202 89-274 (835)
86 KOG1125 TPR repeat-containing 98.9 6.1E-08 1.3E-12 93.0 15.6 220 152-372 296-527 (579)
87 KOG3616 Selective LIM binding 98.9 4.4E-07 9.6E-12 89.2 21.3 205 151-382 742-947 (1636)
88 KOG4340 Uncharacterized conser 98.9 1.2E-06 2.6E-11 77.4 21.6 305 41-368 13-335 (459)
89 PF04733 Coatomer_E: Coatomer 98.8 4E-07 8.7E-12 84.3 18.6 215 145-372 39-265 (290)
90 KOG1156 N-terminal acetyltrans 98.8 2E-05 4.4E-10 77.1 30.1 181 21-205 55-248 (700)
91 KOG0624 dsRNA-activated protei 98.8 9.7E-06 2.1E-10 73.2 25.5 191 37-234 37-250 (504)
92 PF12854 PPR_1: PPR repeat 98.8 7.7E-09 1.7E-13 61.3 3.8 34 1-34 1-34 (34)
93 KOG1070 rRNA processing protei 98.8 9.7E-07 2.1E-11 92.7 20.4 200 173-375 1455-1666(1710)
94 KOG1125 TPR repeat-containing 98.7 1.1E-06 2.3E-11 84.7 18.4 242 117-362 294-561 (579)
95 TIGR03302 OM_YfiO outer membra 98.7 2.2E-06 4.8E-11 77.9 19.9 182 174-373 31-233 (235)
96 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.2E-13 58.5 4.2 34 102-135 1-34 (34)
97 KOG1156 N-terminal acetyltrans 98.7 0.00011 2.3E-09 72.1 29.7 358 6-371 74-510 (700)
98 PRK10370 formate-dependent nit 98.7 3.2E-06 6.9E-11 73.9 18.0 154 182-346 22-181 (198)
99 KOG1127 TPR repeat-containing 98.7 2.4E-06 5.3E-11 87.0 19.0 355 8-368 493-909 (1238)
100 PRK04841 transcriptional regul 98.6 0.00011 2.5E-09 80.8 33.8 325 16-341 383-763 (903)
101 KOG4162 Predicted calmodulin-b 98.6 4.3E-05 9.2E-10 76.4 25.5 285 55-343 461-788 (799)
102 KOG0624 dsRNA-activated protei 98.6 0.00031 6.8E-09 63.7 28.7 308 13-345 44-377 (504)
103 KOG1914 mRNA cleavage and poly 98.6 0.00076 1.6E-08 65.1 33.6 158 208-368 367-535 (656)
104 PRK10370 formate-dependent nit 98.6 3.6E-06 7.7E-11 73.6 16.5 147 214-374 23-175 (198)
105 KOG3617 WD40 and TPR repeat-co 98.6 7.4E-06 1.6E-10 81.9 19.9 338 6-371 725-1108(1416)
106 KOG3785 Uncharacterized conser 98.6 0.00018 4E-09 65.5 26.6 357 13-376 63-494 (557)
107 PLN02789 farnesyltranstransfer 98.6 3.7E-05 8.1E-10 72.3 23.4 226 110-370 39-300 (320)
108 PRK15179 Vi polysaccharide bio 98.6 7.1E-06 1.5E-10 84.9 20.0 158 206-372 85-245 (694)
109 KOG1070 rRNA processing protei 98.6 2.9E-05 6.3E-10 82.2 24.2 162 178-339 1499-1664(1710)
110 TIGR03302 OM_YfiO outer membra 98.5 1.1E-05 2.5E-10 73.2 19.2 182 35-236 30-232 (235)
111 KOG1128 Uncharacterized conser 98.5 6.5E-06 1.4E-10 81.5 18.2 130 155-285 499-631 (777)
112 KOG1128 Uncharacterized conser 98.5 5.2E-06 1.1E-10 82.2 17.3 220 105-339 395-617 (777)
113 KOG0985 Vesicle coat protein c 98.5 0.00035 7.5E-09 71.9 30.4 140 208-367 1105-1244(1666)
114 KOG4340 Uncharacterized conser 98.5 6E-05 1.3E-09 66.9 21.9 283 9-303 12-336 (459)
115 PLN02789 farnesyltranstransfer 98.5 7.5E-05 1.6E-09 70.2 24.1 209 75-288 39-266 (320)
116 PRK15359 type III secretion sy 98.5 4.5E-06 9.7E-11 69.0 13.9 107 244-353 27-136 (144)
117 KOG3617 WD40 and TPR repeat-co 98.5 0.00032 6.9E-09 70.7 28.4 322 6-367 756-1169(1416)
118 KOG0548 Molecular co-chaperone 98.5 0.00019 4.1E-09 69.1 26.0 323 46-373 10-422 (539)
119 KOG2376 Signal recognition par 98.5 0.00043 9.3E-09 67.4 28.3 335 13-367 18-400 (652)
120 PRK14720 transcript cleavage f 98.4 4.7E-05 1E-09 79.7 21.6 46 309-354 223-268 (906)
121 KOG3616 Selective LIM binding 98.4 0.00051 1.1E-08 68.4 27.1 264 80-373 739-1025(1636)
122 PRK15359 type III secretion sy 98.4 7.3E-06 1.6E-10 67.8 12.6 114 29-144 15-128 (144)
123 KOG1127 TPR repeat-containing 98.4 0.00014 3.1E-09 74.7 23.5 324 37-370 595-994 (1238)
124 COG4783 Putative Zn-dependent 98.4 0.00018 3.9E-09 68.6 22.7 209 22-249 252-470 (484)
125 KOG0985 Vesicle coat protein c 98.4 0.0011 2.4E-08 68.4 29.3 251 37-322 983-1262(1666)
126 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.7E-05 3.7E-10 76.0 15.8 129 177-308 170-299 (395)
127 COG5010 TadD Flp pilus assembl 98.3 7.9E-05 1.7E-09 65.3 17.8 151 214-366 73-225 (257)
128 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.5E-11 52.7 4.3 35 39-73 1-35 (35)
129 PRK15179 Vi polysaccharide bio 98.3 0.00014 3E-09 75.6 21.3 130 72-203 85-215 (694)
130 KOG1914 mRNA cleavage and poly 98.2 0.0057 1.2E-07 59.3 29.3 367 4-375 17-467 (656)
131 PRK14720 transcript cleavage f 98.2 0.00052 1.1E-08 72.2 24.7 237 36-320 29-268 (906)
132 TIGR02552 LcrH_SycD type III s 98.2 2.1E-05 4.5E-10 64.5 12.0 101 273-373 12-115 (135)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.5E-05 7.6E-10 73.9 14.1 122 12-135 174-295 (395)
134 COG5010 TadD Flp pilus assembl 98.2 9.8E-05 2.1E-09 64.7 15.5 166 37-206 66-232 (257)
135 COG4783 Putative Zn-dependent 98.2 0.00035 7.5E-09 66.7 20.3 146 37-204 305-453 (484)
136 PF13812 PPR_3: Pentatricopept 98.2 2.8E-06 6E-11 50.6 4.3 34 38-71 1-34 (34)
137 PRK15363 pathogenicity island 98.2 2.5E-05 5.4E-10 63.7 11.0 96 276-371 34-131 (157)
138 TIGR02552 LcrH_SycD type III s 98.2 5.9E-05 1.3E-09 61.8 13.3 113 229-344 5-120 (135)
139 KOG2053 Mitochondrial inherita 98.2 0.0064 1.4E-07 62.4 29.6 68 311-378 438-508 (932)
140 KOG3081 Vesicle coat complex C 98.2 0.00087 1.9E-08 58.9 20.2 147 215-370 116-269 (299)
141 KOG3060 Uncharacterized conser 98.1 0.00053 1.1E-08 59.8 18.6 172 172-347 47-229 (289)
142 KOG3081 Vesicle coat complex C 98.1 0.0044 9.6E-08 54.7 24.3 155 182-342 114-275 (299)
143 TIGR00756 PPR pentatricopeptid 98.0 9.3E-06 2E-10 48.6 4.2 32 209-240 2-34 (35)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00053 1.2E-08 56.8 15.3 112 121-232 24-143 (145)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00071 1.5E-08 56.1 15.2 115 220-335 24-144 (145)
146 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00029 6.4E-09 56.0 12.5 102 243-344 4-111 (119)
147 cd00189 TPR Tetratricopeptide 97.9 0.00016 3.5E-09 54.3 10.4 93 280-372 3-97 (100)
148 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3E-10 46.3 3.2 30 39-68 1-30 (31)
149 KOG0553 TPR repeat-containing 97.9 0.00011 2.5E-09 65.6 10.3 100 250-352 90-192 (304)
150 KOG3060 Uncharacterized conser 97.9 0.0023 4.9E-08 56.0 17.6 162 210-374 55-222 (289)
151 PF13812 PPR_3: Pentatricopept 97.8 3.5E-05 7.6E-10 45.7 4.3 30 209-238 3-32 (34)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00041 8.8E-09 55.1 11.3 97 278-374 3-107 (119)
153 PF12895 Apc3: Anaphase-promot 97.8 3.6E-05 7.9E-10 57.0 4.6 77 291-368 3-83 (84)
154 PF13414 TPR_11: TPR repeat; P 97.8 8.4E-05 1.8E-09 52.6 6.2 65 308-372 2-67 (69)
155 PF01535 PPR: PPR repeat; Int 97.8 3.6E-05 7.9E-10 44.5 3.4 29 209-237 2-30 (31)
156 KOG0550 Molecular chaperone (D 97.7 0.0016 3.4E-08 60.9 15.4 86 287-372 259-350 (486)
157 cd00189 TPR Tetratricopeptide 97.7 0.00037 8E-09 52.3 10.0 96 41-138 3-98 (100)
158 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.05 1.1E-06 51.8 24.8 329 4-342 39-535 (660)
159 PRK10153 DNA-binding transcrip 97.7 0.0022 4.8E-08 64.6 17.0 66 308-374 419-484 (517)
160 PRK02603 photosystem I assembl 97.7 0.0017 3.7E-08 55.5 14.1 128 207-358 35-166 (172)
161 PLN03088 SGT1, suppressor of 97.7 0.0007 1.5E-08 65.2 12.6 100 250-352 11-113 (356)
162 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.5E-09 50.5 6.0 59 315-373 3-61 (65)
163 PLN03088 SGT1, suppressor of 97.6 0.0014 3E-08 63.3 13.7 105 45-151 9-113 (356)
164 PF05843 Suf: Suppressor of fo 97.6 0.0032 7E-08 58.5 15.5 133 209-343 3-141 (280)
165 KOG2053 Mitochondrial inherita 97.6 0.13 2.8E-06 53.3 28.5 134 49-187 20-155 (932)
166 PRK15363 pathogenicity island 97.6 0.0028 6.2E-08 51.9 12.8 127 4-137 4-132 (157)
167 PRK02603 photosystem I assembl 97.6 0.0023 5.1E-08 54.7 13.2 90 37-127 34-125 (172)
168 PF04840 Vps16_C: Vps16, C-ter 97.5 0.032 7E-07 52.5 21.2 111 242-369 178-288 (319)
169 PF14938 SNAP: Soluble NSF att 97.5 0.0052 1.1E-07 57.3 16.0 114 214-341 101-228 (282)
170 COG4235 Cytochrome c biogenesi 97.5 0.0011 2.3E-08 59.9 10.6 104 274-377 152-261 (287)
171 PF13432 TPR_16: Tetratricopep 97.5 0.00045 9.8E-09 48.1 6.7 61 283-343 3-65 (65)
172 PF14559 TPR_19: Tetratricopep 97.5 0.00061 1.3E-08 47.9 7.3 64 84-148 2-65 (68)
173 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.4E-08 63.1 12.2 114 39-152 67-184 (429)
174 CHL00033 ycf3 photosystem I as 97.5 0.0014 2.9E-08 56.0 10.7 93 277-369 35-139 (168)
175 PF12895 Apc3: Anaphase-promot 97.5 0.00035 7.6E-09 51.7 6.1 80 255-334 3-83 (84)
176 PF14559 TPR_19: Tetratricopep 97.4 0.00022 4.8E-09 50.2 4.3 54 320-373 2-55 (68)
177 PF08579 RPM2: Mitochondrial r 97.4 0.0032 6.8E-08 47.9 10.1 81 40-120 27-116 (120)
178 PF05843 Suf: Suppressor of fo 97.4 0.0048 1E-07 57.3 13.7 99 39-139 2-101 (280)
179 PF13371 TPR_9: Tetratricopept 97.4 0.00082 1.8E-08 48.1 6.8 59 316-374 2-60 (73)
180 KOG1130 Predicted G-alpha GTPa 97.3 0.0083 1.8E-07 56.2 14.4 52 46-98 25-80 (639)
181 KOG0553 TPR repeat-containing 97.3 0.0025 5.3E-08 57.3 10.7 99 83-184 91-190 (304)
182 PF14938 SNAP: Soluble NSF att 97.3 0.15 3.2E-06 47.6 25.4 96 209-304 157-264 (282)
183 PRK10866 outer membrane biogen 97.3 0.072 1.6E-06 48.3 20.1 54 248-301 182-236 (243)
184 KOG2280 Vacuolar assembly/sort 97.3 0.29 6.2E-06 49.9 25.3 308 42-368 441-795 (829)
185 PRK15331 chaperone protein Sic 97.2 0.0041 8.8E-08 51.2 10.1 90 282-371 42-133 (165)
186 KOG1538 Uncharacterized conser 97.2 0.042 9E-07 54.6 18.4 62 239-310 745-807 (1081)
187 PF10037 MRP-S27: Mitochondria 97.2 0.003 6.6E-08 61.1 10.8 116 6-121 65-186 (429)
188 CHL00033 ycf3 photosystem I as 97.2 0.011 2.3E-07 50.4 13.2 93 38-131 35-136 (168)
189 PRK10866 outer membrane biogen 97.2 0.05 1.1E-06 49.3 17.5 173 83-268 42-239 (243)
190 PF04840 Vps16_C: Vps16, C-ter 97.1 0.24 5.2E-06 46.7 27.4 109 209-334 179-287 (319)
191 COG4700 Uncharacterized protei 97.1 0.096 2.1E-06 43.9 16.9 127 69-197 85-214 (251)
192 PF13414 TPR_11: TPR repeat; P 97.1 0.0015 3.2E-08 46.1 5.9 64 277-340 3-69 (69)
193 PF03704 BTAD: Bacterial trans 97.1 0.01 2.2E-07 49.2 11.8 115 251-379 16-137 (146)
194 KOG2041 WD40 repeat protein [G 97.1 0.094 2E-06 52.7 19.7 237 105-372 689-952 (1189)
195 KOG2796 Uncharacterized conser 97.1 0.015 3.3E-07 51.2 12.8 125 79-206 183-316 (366)
196 PRK10153 DNA-binding transcrip 97.1 0.027 5.9E-07 56.9 16.7 136 34-171 333-483 (517)
197 COG4700 Uncharacterized protei 97.0 0.014 3E-07 48.7 11.4 130 239-371 87-221 (251)
198 PF06239 ECSIT: Evolutionarily 97.0 0.01 2.2E-07 51.1 10.3 96 196-292 34-153 (228)
199 PF06239 ECSIT: Evolutionarily 96.9 0.012 2.6E-07 50.7 10.5 98 26-123 33-153 (228)
200 PF13281 DUF4071: Domain of un 96.9 0.17 3.7E-06 48.3 19.1 160 181-343 146-339 (374)
201 PRK10803 tol-pal system protei 96.9 0.0093 2E-07 54.5 10.4 92 280-371 146-245 (263)
202 KOG0550 Molecular chaperone (D 96.9 0.32 6.9E-06 46.1 20.1 252 44-303 55-347 (486)
203 PF13525 YfiO: Outer membrane 96.9 0.15 3.3E-06 44.8 17.9 59 82-140 14-74 (203)
204 PF12688 TPR_5: Tetratrico pep 96.9 0.032 7E-07 44.0 11.9 90 213-302 7-100 (120)
205 COG3898 Uncharacterized membra 96.9 0.42 9.2E-06 45.0 27.2 81 51-135 133-215 (531)
206 PF08579 RPM2: Mitochondrial r 96.8 0.024 5.2E-07 43.2 10.3 78 211-289 29-116 (120)
207 PF13431 TPR_17: Tetratricopep 96.8 0.00082 1.8E-08 39.6 2.1 33 332-364 2-34 (34)
208 PF12688 TPR_5: Tetratrico pep 96.8 0.038 8.2E-07 43.6 12.0 59 82-140 10-70 (120)
209 KOG2041 WD40 repeat protein [G 96.8 0.77 1.7E-05 46.5 24.9 114 5-133 690-821 (1189)
210 COG4235 Cytochrome c biogenesi 96.8 0.028 6E-07 51.0 12.0 110 37-148 155-267 (287)
211 PF13371 TPR_9: Tetratricopept 96.7 0.0098 2.1E-07 42.4 7.6 61 82-143 4-64 (73)
212 PF13428 TPR_14: Tetratricopep 96.7 0.0035 7.6E-08 39.5 4.4 42 310-351 2-43 (44)
213 PRK10803 tol-pal system protei 96.6 0.057 1.2E-06 49.4 13.3 100 244-343 146-251 (263)
214 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.01 2.3E-07 57.1 8.8 96 276-374 74-176 (453)
215 KOG1538 Uncharacterized conser 96.5 0.22 4.7E-06 49.8 16.9 258 71-369 554-830 (1081)
216 PF12921 ATP13: Mitochondrial 96.4 0.044 9.6E-07 43.7 9.9 96 176-288 2-99 (126)
217 PF12921 ATP13: Mitochondrial 96.3 0.047 1E-06 43.5 9.5 96 240-353 1-98 (126)
218 KOG2796 Uncharacterized conser 96.3 0.78 1.7E-05 40.9 19.2 226 109-341 70-318 (366)
219 PF13424 TPR_12: Tetratricopep 96.2 0.0058 1.3E-07 44.3 3.6 60 311-370 7-73 (78)
220 PF13525 YfiO: Outer membrane 96.2 0.36 7.7E-06 42.5 15.5 60 43-102 10-71 (203)
221 PF04184 ST7: ST7 protein; In 96.1 0.75 1.6E-05 45.0 17.8 97 247-343 265-380 (539)
222 PF13424 TPR_12: Tetratricopep 96.1 0.012 2.5E-07 42.6 4.7 59 279-337 7-74 (78)
223 COG3898 Uncharacterized membra 96.0 1.5 3.2E-05 41.5 29.3 302 53-372 68-392 (531)
224 KOG2280 Vacuolar assembly/sort 95.9 2.4 5.2E-05 43.6 24.7 303 12-334 442-795 (829)
225 COG0457 NrfG FOG: TPR repeat [ 95.8 1.2 2.6E-05 39.3 23.7 191 178-371 61-264 (291)
226 KOG0543 FKBP-type peptidyl-pro 95.8 0.11 2.3E-06 49.2 10.7 65 309-373 257-321 (397)
227 PF03704 BTAD: Bacterial trans 95.7 0.099 2.1E-06 43.2 9.5 70 210-279 65-138 (146)
228 KOG1130 Predicted G-alpha GTPa 95.7 0.046 1E-06 51.4 8.0 257 116-372 25-344 (639)
229 PF13281 DUF4071: Domain of un 95.7 1.3 2.8E-05 42.4 17.7 100 43-142 146-260 (374)
230 PF13512 TPR_18: Tetratricopep 95.7 0.4 8.7E-06 38.7 12.1 54 217-270 20-76 (142)
231 COG1729 Uncharacterized protei 95.6 0.1 2.2E-06 46.9 9.3 91 279-372 144-244 (262)
232 smart00299 CLH Clathrin heavy 95.6 1 2.2E-05 36.8 14.9 125 76-217 10-135 (140)
233 KOG1585 Protein required for f 95.5 1.6 3.4E-05 38.6 15.8 88 278-366 151-250 (308)
234 PF09205 DUF1955: Domain of un 95.5 0.95 2.1E-05 35.8 14.1 85 289-375 68-152 (161)
235 KOG0543 FKBP-type peptidyl-pro 95.5 0.33 7.1E-06 46.1 12.6 95 278-372 258-355 (397)
236 PF07079 DUF1347: Protein of u 95.4 2.8 6.1E-05 40.6 29.8 355 9-370 48-522 (549)
237 KOG1258 mRNA processing protei 95.3 3.5 7.6E-05 41.4 27.3 181 174-357 295-489 (577)
238 PF04053 Coatomer_WDAD: Coatom 95.3 0.41 8.8E-06 47.4 13.5 153 19-202 273-428 (443)
239 KOG4555 TPR repeat-containing 95.2 0.25 5.4E-06 38.8 9.1 89 286-374 52-146 (175)
240 PRK11906 transcriptional regul 95.2 0.97 2.1E-05 44.1 15.1 155 208-366 252-430 (458)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.28 6E-06 47.6 11.3 66 105-170 72-141 (453)
242 PRK15331 chaperone protein Sic 95.1 0.42 9.1E-06 39.6 10.7 81 188-268 49-132 (165)
243 COG3118 Thioredoxin domain-con 95.1 2.6 5.6E-05 38.5 16.6 141 216-357 143-286 (304)
244 COG4105 ComL DNA uptake lipopr 95.1 2 4.4E-05 38.4 15.6 68 210-277 37-107 (254)
245 smart00299 CLH Clathrin heavy 95.0 1.6 3.6E-05 35.5 15.0 21 182-202 13-33 (140)
246 COG3118 Thioredoxin domain-con 95.0 2.9 6.2E-05 38.2 16.9 120 82-204 143-264 (304)
247 COG4785 NlpI Lipoprotein NlpI, 94.9 2.2 4.7E-05 37.0 14.7 161 208-374 100-268 (297)
248 PF04053 Coatomer_WDAD: Coatom 94.9 0.47 1E-05 47.0 12.6 131 218-373 272-403 (443)
249 KOG0890 Protein kinase of the 94.9 10 0.00022 44.6 23.7 310 43-374 1388-1733(2382)
250 PF13512 TPR_18: Tetratricopep 94.8 0.86 1.9E-05 36.9 11.6 57 287-343 20-81 (142)
251 KOG1941 Acetylcholine receptor 94.7 0.57 1.2E-05 43.7 11.5 51 317-367 214-270 (518)
252 PF07079 DUF1347: Protein of u 94.6 4.7 0.0001 39.1 27.9 334 5-347 126-529 (549)
253 KOG3941 Intermediate in Toll s 94.6 0.35 7.6E-06 43.4 9.6 99 195-294 53-175 (406)
254 COG1729 Uncharacterized protei 94.5 0.47 1E-05 42.7 10.4 91 253-343 153-249 (262)
255 COG4105 ComL DNA uptake lipopr 94.5 3.4 7.3E-05 37.0 19.8 178 174-372 33-233 (254)
256 PF10300 DUF3808: Protein of u 94.5 2.1 4.5E-05 43.1 16.3 171 92-268 176-374 (468)
257 PF10300 DUF3808: Protein of u 94.4 2.5 5.3E-05 42.6 16.6 116 254-372 246-376 (468)
258 PF00515 TPR_1: Tetratricopept 94.4 0.093 2E-06 30.6 4.1 32 310-341 2-33 (34)
259 KOG3941 Intermediate in Toll s 94.3 0.33 7.1E-06 43.6 8.8 98 26-123 53-173 (406)
260 PRK11906 transcriptional regul 94.3 1 2.3E-05 43.9 13.0 129 245-373 257-402 (458)
261 PF07719 TPR_2: Tetratricopept 94.2 0.16 3.4E-06 29.5 4.8 32 311-342 3-34 (34)
262 PF09205 DUF1955: Domain of un 94.2 1.9 4.1E-05 34.2 11.6 59 144-203 89-147 (161)
263 KOG4555 TPR repeat-containing 94.1 0.37 8.1E-06 37.9 7.7 89 250-341 52-147 (175)
264 KOG2066 Vacuolar assembly/sort 94.1 8.5 0.00018 40.0 21.6 67 245-323 638-704 (846)
265 KOG2610 Uncharacterized conser 94.1 1.7 3.6E-05 40.3 12.9 112 189-303 116-235 (491)
266 COG0457 NrfG FOG: TPR repeat [ 93.9 4.1 8.9E-05 35.7 28.6 193 145-341 63-268 (291)
267 PF13428 TPR_14: Tetratricopep 93.5 0.22 4.7E-06 31.2 4.7 33 110-142 3-35 (44)
268 COG5107 RNA14 Pre-mRNA 3'-end 93.3 8.5 0.00018 37.4 29.2 92 26-120 28-121 (660)
269 KOG2610 Uncharacterized conser 93.3 1.9 4E-05 40.0 11.8 145 86-232 116-272 (491)
270 PF09613 HrpB1_HrpK: Bacterial 93.2 4.3 9.3E-05 33.6 13.1 69 83-153 20-89 (160)
271 PF04097 Nic96: Nup93/Nic96; 93.1 8.2 0.00018 40.4 18.1 56 12-67 116-181 (613)
272 PF02259 FAT: FAT domain; Int 92.9 9.2 0.0002 36.7 19.1 146 206-354 145-303 (352)
273 COG4649 Uncharacterized protei 92.9 1.6 3.4E-05 36.4 9.7 117 19-135 70-194 (221)
274 KOG1920 IkappaB kinase complex 92.7 18 0.0004 39.6 23.0 31 105-136 788-820 (1265)
275 COG3629 DnrI DNA-binding trans 92.4 0.73 1.6E-05 42.1 8.2 62 310-371 154-215 (280)
276 PRK09687 putative lyase; Provi 92.4 9.1 0.0002 35.5 26.4 240 29-288 28-278 (280)
277 PF08631 SPO22: Meiosis protei 92.3 9.4 0.0002 35.4 22.6 161 208-369 85-272 (278)
278 COG4649 Uncharacterized protei 92.2 5.4 0.00012 33.4 12.0 129 75-204 61-195 (221)
279 PF10602 RPN7: 26S proteasome 91.9 2.2 4.9E-05 36.4 10.3 96 39-136 37-141 (177)
280 PF13170 DUF4003: Protein of u 91.8 4.8 0.0001 37.6 13.1 126 55-182 79-223 (297)
281 PF08631 SPO22: Meiosis protei 91.8 11 0.00023 35.0 21.9 19 318-336 255-273 (278)
282 PF04184 ST7: ST7 protein; In 91.8 5.4 0.00012 39.3 13.5 74 309-382 259-334 (539)
283 KOG0276 Vesicle coat complex C 91.7 2.7 5.8E-05 42.1 11.5 149 20-202 599-747 (794)
284 KOG2114 Vacuolar assembly/sort 91.5 21 0.00046 37.7 28.4 177 12-205 339-519 (933)
285 PF13181 TPR_8: Tetratricopept 91.4 0.43 9.3E-06 27.6 3.9 31 311-341 3-33 (34)
286 PF13170 DUF4003: Protein of u 91.4 8.5 0.00019 36.0 14.2 126 157-285 78-225 (297)
287 COG3629 DnrI DNA-binding trans 91.2 2.3 5E-05 38.9 10.0 57 178-234 155-214 (280)
288 PF13176 TPR_7: Tetratricopept 91.2 0.46 9.9E-06 28.2 3.8 25 312-336 2-26 (36)
289 KOG1585 Protein required for f 91.0 11 0.00024 33.6 15.2 84 41-134 34-117 (308)
290 PF13176 TPR_7: Tetratricopept 90.9 0.5 1.1E-05 28.0 3.8 26 40-65 1-26 (36)
291 PF07035 Mic1: Colon cancer-as 90.8 9 0.00019 32.2 14.5 39 94-132 15-53 (167)
292 KOG4234 TPR repeat-containing 90.6 1.1 2.5E-05 38.2 6.9 88 287-374 105-199 (271)
293 PF00515 TPR_1: Tetratricopept 90.5 0.56 1.2E-05 27.2 3.8 32 109-140 2-33 (34)
294 PF13431 TPR_17: Tetratricopep 90.4 0.5 1.1E-05 27.6 3.4 32 96-128 2-33 (34)
295 KOG2066 Vacuolar assembly/sort 89.9 28 0.0006 36.5 22.6 169 14-207 363-536 (846)
296 PF09613 HrpB1_HrpK: Bacterial 89.9 10 0.00022 31.5 12.6 90 248-340 17-108 (160)
297 COG4785 NlpI Lipoprotein NlpI, 89.5 14 0.0003 32.3 16.3 175 89-269 81-265 (297)
298 COG3947 Response regulator con 89.3 13 0.00028 34.1 12.6 61 311-371 281-341 (361)
299 PF07719 TPR_2: Tetratricopept 89.1 0.85 1.8E-05 26.2 3.8 31 110-140 3-33 (34)
300 KOG1920 IkappaB kinase complex 89.1 40 0.00088 37.2 19.6 87 208-304 940-1026(1265)
301 PF10602 RPN7: 26S proteasome 88.9 5.4 0.00012 34.1 10.0 92 177-268 37-140 (177)
302 TIGR02561 HrpB1_HrpK type III 88.5 2.2 4.8E-05 34.7 6.8 53 321-373 22-74 (153)
303 PRK09687 putative lyase; Provi 88.3 21 0.00046 33.1 26.9 81 71-155 35-119 (280)
304 KOG1941 Acetylcholine receptor 87.8 25 0.00054 33.3 14.7 124 145-268 126-273 (518)
305 PRK11619 lytic murein transgly 87.6 41 0.00088 35.5 29.6 114 256-369 256-372 (644)
306 TIGR02508 type_III_yscG type I 87.5 10 0.00022 28.5 9.9 88 156-246 20-107 (115)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 87.4 4.2 9E-05 30.3 7.0 59 56-115 25-83 (103)
308 KOG2114 Vacuolar assembly/sort 87.1 29 0.00062 36.7 15.1 178 144-335 337-516 (933)
309 TIGR02561 HrpB1_HrpK type III 87.1 15 0.00033 30.0 11.2 53 86-140 23-76 (153)
310 PF06552 TOM20_plant: Plant sp 86.3 10 0.00022 32.1 9.7 44 325-375 96-139 (186)
311 KOG4570 Uncharacterized conser 86.2 3.8 8.2E-05 37.7 7.6 109 28-138 54-165 (418)
312 PF00637 Clathrin: Region in C 85.9 0.72 1.6E-05 37.8 2.9 49 14-62 14-66 (143)
313 PF02284 COX5A: Cytochrome c o 85.6 7.1 0.00015 29.4 7.5 59 225-285 28-87 (108)
314 KOG4648 Uncharacterized conser 85.4 4.6 0.0001 37.6 7.9 93 46-141 105-198 (536)
315 PF11207 DUF2989: Protein of u 84.9 8.7 0.00019 33.2 8.8 73 224-297 123-198 (203)
316 PRK12798 chemotaxis protein; R 84.8 40 0.00087 32.8 21.7 181 189-370 125-322 (421)
317 KOG4234 TPR repeat-containing 84.6 8.6 0.00019 33.1 8.5 23 117-139 177-199 (271)
318 PF02284 COX5A: Cytochrome c o 84.4 5.5 0.00012 30.0 6.5 60 56-116 28-87 (108)
319 PF07035 Mic1: Colon cancer-as 83.9 25 0.00053 29.6 15.7 52 280-332 92-143 (167)
320 KOG1550 Extracellular protein 83.9 57 0.0012 33.8 22.1 175 89-267 228-423 (552)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 83.8 8.8 0.00019 28.6 7.2 61 223-285 23-84 (103)
322 PF13174 TPR_6: Tetratricopept 83.4 1.3 2.8E-05 25.2 2.5 27 114-140 6-32 (33)
323 PF13181 TPR_8: Tetratricopept 83.3 1.8 3.8E-05 24.9 3.1 30 110-139 3-32 (34)
324 PF13174 TPR_6: Tetratricopept 83.3 2.6 5.5E-05 23.9 3.7 27 315-341 6-32 (33)
325 PRK15180 Vi polysaccharide bio 83.1 22 0.00047 35.0 11.5 121 252-374 300-422 (831)
326 KOG4648 Uncharacterized conser 83.0 2.8 6.2E-05 38.9 5.5 109 248-363 104-215 (536)
327 KOG1586 Protein required for f 82.9 34 0.00073 30.4 14.0 24 319-342 164-187 (288)
328 PF00637 Clathrin: Region in C 82.3 0.97 2.1E-05 37.0 2.2 83 147-232 13-95 (143)
329 PF07721 TPR_4: Tetratricopept 82.3 1.9 4.2E-05 23.2 2.7 23 345-367 3-25 (26)
330 COG1747 Uncharacterized N-term 82.1 58 0.0013 32.6 22.3 173 174-352 64-248 (711)
331 PF13374 TPR_10: Tetratricopep 82.0 3 6.4E-05 25.2 3.9 27 109-135 3-29 (42)
332 KOG0276 Vesicle coat complex C 81.8 15 0.00031 37.3 10.1 111 9-134 616-747 (794)
333 KOG1258 mRNA processing protei 81.5 66 0.0014 32.8 24.3 120 240-363 296-420 (577)
334 KOG2396 HAT (Half-A-TPR) repea 81.4 61 0.0013 32.3 21.0 87 248-337 467-558 (568)
335 PF02259 FAT: FAT domain; Int 81.4 52 0.0011 31.5 16.9 67 308-374 145-215 (352)
336 smart00028 TPR Tetratricopepti 81.3 3.4 7.3E-05 22.5 3.8 29 312-340 4-32 (34)
337 PF13374 TPR_10: Tetratricopep 80.9 4.1 8.8E-05 24.5 4.3 27 311-337 4-30 (42)
338 KOG1464 COP9 signalosome, subu 80.8 44 0.00095 30.3 20.5 188 139-333 103-327 (440)
339 PF14853 Fis1_TPR_C: Fis1 C-te 79.7 3.8 8.2E-05 26.8 3.8 32 314-345 6-37 (53)
340 PF07721 TPR_4: Tetratricopept 79.3 3.3 7.2E-05 22.3 3.0 22 10-31 4-25 (26)
341 KOG3364 Membrane protein invol 79.1 14 0.00031 29.5 7.4 50 323-372 49-100 (149)
342 PF11207 DUF2989: Protein of u 78.5 17 0.00036 31.5 8.4 72 89-161 122-198 (203)
343 KOG2063 Vacuolar assembly/sort 78.5 1.1E+02 0.0023 33.4 17.4 27 40-66 506-532 (877)
344 KOG4570 Uncharacterized conser 78.4 13 0.00028 34.4 7.9 46 55-100 117-162 (418)
345 KOG2396 HAT (Half-A-TPR) repea 78.4 76 0.0017 31.7 28.1 74 37-113 104-179 (568)
346 PF09477 Type_III_YscG: Bacter 78.3 28 0.0006 26.6 10.5 90 153-245 18-107 (116)
347 COG4455 ImpE Protein of avirul 77.9 10 0.00022 33.2 6.8 64 280-343 4-69 (273)
348 PF13929 mRNA_stabil: mRNA sta 77.4 51 0.0011 30.4 11.5 144 41-187 134-289 (292)
349 PRK15180 Vi polysaccharide bio 76.5 16 0.00034 35.9 8.4 118 219-341 301-423 (831)
350 PF06552 TOM20_plant: Plant sp 75.9 34 0.00075 29.0 9.3 44 124-173 96-139 (186)
351 PF13929 mRNA_stabil: mRNA sta 74.5 72 0.0016 29.5 16.0 108 220-327 141-256 (292)
352 COG2976 Uncharacterized protei 74.4 56 0.0012 28.2 12.3 87 82-170 98-188 (207)
353 KOG1550 Extracellular protein 74.2 1.1E+02 0.0025 31.6 19.9 243 85-340 261-540 (552)
354 KOG3807 Predicted membrane pro 74.1 41 0.00088 31.5 10.0 99 246-344 280-397 (556)
355 PRK10941 hypothetical protein; 73.7 18 0.00038 33.3 7.9 62 311-372 183-244 (269)
356 KOG0890 Protein kinase of the 73.7 2.2E+02 0.0047 34.6 26.0 147 12-165 1388-1542(2382)
357 PF14853 Fis1_TPR_C: Fis1 C-te 73.5 23 0.00049 23.2 6.6 27 346-372 4-30 (53)
358 TIGR03504 FimV_Cterm FimV C-te 72.0 6.9 0.00015 24.4 3.3 26 348-373 4-29 (44)
359 TIGR02508 type_III_yscG type I 72.0 19 0.00041 27.1 6.0 51 47-103 48-98 (115)
360 cd08819 CARD_MDA5_2 Caspase ac 71.7 37 0.0008 24.9 7.5 66 160-227 21-86 (88)
361 KOG4507 Uncharacterized conser 71.5 15 0.00033 37.0 7.1 94 254-350 620-717 (886)
362 smart00028 TPR Tetratricopepti 71.0 7.5 0.00016 20.9 3.4 28 111-138 4-31 (34)
363 PF11663 Toxin_YhaV: Toxin wit 69.9 6.5 0.00014 31.3 3.5 31 51-83 108-138 (140)
364 PF14669 Asp_Glu_race_2: Putat 69.7 72 0.0016 27.4 14.2 94 200-303 100-207 (233)
365 smart00386 HAT HAT (Half-A-TPR 69.6 9.8 0.00021 21.1 3.6 29 323-351 1-29 (33)
366 COG1747 Uncharacterized N-term 69.2 1.3E+02 0.0029 30.2 24.1 160 105-269 63-233 (711)
367 PF13762 MNE1: Mitochondrial s 68.1 31 0.00067 28.2 7.2 81 41-121 42-128 (145)
368 PF14561 TPR_20: Tetratricopep 67.6 14 0.00031 27.3 4.9 44 330-373 9-52 (90)
369 PF11768 DUF3312: Protein of u 67.0 1.1E+02 0.0023 31.2 11.9 57 180-236 412-473 (545)
370 KOG4642 Chaperone-dependent E3 66.5 20 0.00043 31.9 6.1 52 318-369 53-104 (284)
371 PF04910 Tcf25: Transcriptiona 63.9 1.5E+02 0.0032 28.8 14.5 64 308-371 99-167 (360)
372 COG4455 ImpE Protein of avirul 63.8 1.1E+02 0.0023 27.2 12.1 59 210-268 4-62 (273)
373 COG3947 Response regulator con 63.7 1.3E+02 0.0027 28.0 15.1 42 90-133 150-191 (361)
374 KOG2297 Predicted translation 63.5 1.3E+02 0.0028 28.1 12.9 199 106-331 109-343 (412)
375 TIGR03504 FimV_Cterm FimV C-te 63.2 16 0.00034 22.9 3.6 19 82-100 8-26 (44)
376 PF04097 Nic96: Nup93/Nic96; 63.0 2.1E+02 0.0045 30.2 20.2 217 37-268 111-354 (613)
377 PF10366 Vps39_1: Vacuolar sor 62.2 52 0.0011 25.4 7.2 27 209-235 41-67 (108)
378 PF13934 ELYS: Nuclear pore co 62.1 1.2E+02 0.0026 27.1 12.3 71 247-321 114-184 (226)
379 KOG2063 Vacuolar assembly/sort 62.1 2.5E+02 0.0053 30.8 15.8 27 9-35 506-532 (877)
380 PF07163 Pex26: Pex26 protein; 61.9 71 0.0015 29.3 8.8 85 45-131 90-181 (309)
381 COG2909 MalT ATP-dependent tra 61.8 2.4E+02 0.0052 30.6 23.1 192 187-382 426-657 (894)
382 KOG1586 Protein required for f 61.1 1.2E+02 0.0027 27.1 17.8 56 287-342 164-228 (288)
383 KOG1308 Hsp70-interacting prot 61.0 5.2 0.00011 37.3 1.8 114 253-370 126-242 (377)
384 PF04190 DUF410: Protein of un 60.5 1.4E+02 0.003 27.4 14.4 83 174-270 88-170 (260)
385 PF14863 Alkyl_sulf_dimr: Alky 59.7 55 0.0012 26.7 7.2 64 292-358 56-119 (141)
386 KOG4077 Cytochrome c oxidase, 59.3 53 0.0012 26.0 6.6 40 61-100 72-111 (149)
387 KOG0292 Vesicle coat complex C 59.0 14 0.0003 39.2 4.4 97 220-339 606-702 (1202)
388 PF04910 Tcf25: Transcriptiona 58.4 1.8E+02 0.004 28.2 15.1 88 249-340 111-224 (360)
389 KOG2300 Uncharacterized conser 58.4 2.1E+02 0.0044 28.7 28.8 321 39-366 89-508 (629)
390 PF11846 DUF3366: Domain of un 58.0 47 0.001 28.7 7.2 37 304-340 139-175 (193)
391 COG2976 Uncharacterized protei 57.4 1.3E+02 0.0028 26.1 14.5 53 184-236 134-188 (207)
392 cd08819 CARD_MDA5_2 Caspase ac 56.9 33 0.00072 25.1 4.9 35 86-125 49-83 (88)
393 PF07163 Pex26: Pex26 protein; 56.8 1.3E+02 0.0027 27.8 9.5 87 214-302 90-183 (309)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 56.8 77 0.0017 25.2 7.6 42 327-368 81-124 (126)
395 KOG0686 COP9 signalosome, subu 56.6 2E+02 0.0043 28.1 13.1 93 40-134 152-255 (466)
396 PRK13184 pknD serine/threonine 56.3 3.2E+02 0.007 30.4 23.0 309 42-370 479-831 (932)
397 PF11846 DUF3366: Domain of un 55.5 50 0.0011 28.6 7.0 32 272-303 139-170 (193)
398 PF10366 Vps39_1: Vacuolar sor 55.5 94 0.002 24.0 8.2 55 11-66 3-67 (108)
399 PF10579 Rapsyn_N: Rapsyn N-te 55.2 27 0.00059 25.0 4.1 46 253-298 18-64 (80)
400 PF10579 Rapsyn_N: Rapsyn N-te 54.9 31 0.00067 24.7 4.4 45 321-365 18-65 (80)
401 PF09986 DUF2225: Uncharacteri 54.3 88 0.0019 27.7 8.3 59 315-373 124-195 (214)
402 KOG0545 Aryl-hydrocarbon recep 54.2 1E+02 0.0023 27.7 8.4 58 316-373 237-294 (329)
403 PF11525 CopK: Copper resistan 53.7 4.5 9.7E-05 27.6 0.1 21 488-508 8-28 (73)
404 KOG1114 Tripeptidyl peptidase 53.0 3.5E+02 0.0075 29.7 15.5 54 239-292 1229-1282(1304)
405 PRK10941 hypothetical protein; 52.9 1.6E+02 0.0035 27.2 9.9 60 211-270 185-244 (269)
406 PF11838 ERAP1_C: ERAP1-like C 52.4 2.1E+02 0.0045 27.0 18.0 30 140-169 200-229 (324)
407 KOG4642 Chaperone-dependent E3 51.9 1.8E+02 0.0039 26.2 10.4 115 85-201 22-142 (284)
408 PRK10564 maltose regulon perip 51.8 21 0.00047 33.0 4.1 38 40-77 259-296 (303)
409 KOG2422 Uncharacterized conser 51.6 2.9E+02 0.0063 28.4 12.5 54 317-370 350-405 (665)
410 PF13762 MNE1: Mitochondrial s 51.6 1.3E+02 0.0029 24.6 11.1 80 110-189 41-128 (145)
411 KOG4077 Cytochrome c oxidase, 51.3 1E+02 0.0022 24.5 7.0 69 225-304 67-136 (149)
412 COG5159 RPN6 26S proteasome re 50.8 2E+02 0.0044 26.6 9.8 31 213-243 9-40 (421)
413 KOG0686 COP9 signalosome, subu 50.7 2.5E+02 0.0054 27.4 13.8 59 177-235 151-215 (466)
414 cd00280 TRFH Telomeric Repeat 49.9 1.2E+02 0.0025 26.1 7.6 62 89-151 85-153 (200)
415 KOG4507 Uncharacterized conser 49.4 1.5E+02 0.0033 30.4 9.5 133 239-374 569-707 (886)
416 cd08326 CARD_CASP9 Caspase act 49.2 76 0.0016 23.2 5.9 62 161-226 19-80 (84)
417 COG5108 RPO41 Mitochondrial DN 47.9 1.3E+02 0.0028 31.3 9.0 47 43-89 33-81 (1117)
418 PF12862 Apc5: Anaphase-promot 47.4 74 0.0016 23.6 5.9 52 320-371 9-69 (94)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 46.9 1.5E+02 0.0032 23.6 9.5 43 159-201 81-124 (126)
420 PF12862 Apc5: Anaphase-promot 46.3 84 0.0018 23.3 6.0 26 314-339 46-71 (94)
421 COG5108 RPO41 Mitochondrial DN 45.5 1.2E+02 0.0027 31.4 8.4 23 246-268 33-55 (1117)
422 KOG0376 Serine-threonine phosp 45.4 20 0.00043 35.3 3.0 95 247-344 10-107 (476)
423 PF11848 DUF3368: Domain of un 45.4 65 0.0014 20.5 4.5 31 50-80 14-44 (48)
424 KOG4521 Nuclear pore complex, 45.2 5E+02 0.011 29.4 13.1 156 43-198 925-1124(1480)
425 KOG1464 COP9 signalosome, subu 44.9 2.5E+02 0.0054 25.7 15.5 181 123-303 42-258 (440)
426 PF11768 DUF3312: Protein of u 44.5 2.5E+02 0.0055 28.6 10.4 25 41-65 411-435 (545)
427 PF09670 Cas_Cas02710: CRISPR- 44.2 3.2E+02 0.0069 26.7 11.8 52 217-269 141-197 (379)
428 KOG1498 26S proteasome regulat 44.0 3.1E+02 0.0068 26.6 14.5 103 279-385 133-254 (439)
429 PHA02875 ankyrin repeat protei 42.8 3.4E+02 0.0074 26.7 14.2 209 15-241 7-230 (413)
430 PF06957 COPI_C: Coatomer (COP 42.5 1E+02 0.0022 30.4 7.3 44 299-342 288-333 (422)
431 COG4976 Predicted methyltransf 39.9 54 0.0012 29.1 4.4 56 287-342 5-62 (287)
432 KOG3364 Membrane protein invol 39.9 2E+02 0.0044 23.3 8.6 72 70-141 29-104 (149)
433 KOG3807 Predicted membrane pro 39.8 1.7E+02 0.0037 27.5 7.8 155 44-212 190-352 (556)
434 PRK13800 putative oxidoreducta 39.7 5.8E+02 0.013 28.5 26.3 260 28-311 625-886 (897)
435 PF14689 SPOB_a: Sensor_kinase 39.5 46 0.001 22.6 3.3 30 206-235 22-51 (62)
436 KOG3824 Huntingtin interacting 39.3 62 0.0014 30.0 4.9 59 287-345 126-186 (472)
437 COG4259 Uncharacterized protei 39.1 1.7E+02 0.0037 22.1 6.6 56 92-147 56-111 (121)
438 PF10255 Paf67: RNA polymerase 38.8 2.9E+02 0.0063 27.2 9.7 56 178-233 124-190 (404)
439 KOG0292 Vesicle coat complex C 38.3 3.1E+02 0.0068 29.8 10.2 158 44-237 626-783 (1202)
440 PF15469 Sec5: Exocyst complex 37.9 2.6E+02 0.0055 23.9 10.9 22 247-268 92-113 (182)
441 PF12796 Ank_2: Ankyrin repeat 37.8 1.2E+02 0.0026 21.8 5.8 51 17-73 4-54 (89)
442 PRK11619 lytic murein transgly 37.6 5.3E+02 0.011 27.4 35.7 357 13-377 105-510 (644)
443 PF14561 TPR_20: Tetratricopep 37.6 1.7E+02 0.0036 21.6 8.4 62 308-369 21-85 (90)
444 PF14669 Asp_Glu_race_2: Putat 37.2 2.8E+02 0.006 24.1 13.4 26 176-201 181-206 (233)
445 TIGR01503 MthylAspMut_E methyl 36.6 3.7E+02 0.0081 26.8 9.9 59 361-428 152-214 (480)
446 KOG0889 Histone acetyltransfer 36.6 8.3E+02 0.018 31.6 14.3 339 11-356 2486-2859(3550)
447 KOG0376 Serine-threonine phosp 36.6 89 0.0019 31.0 5.8 101 48-151 14-115 (476)
448 PF10255 Paf67: RNA polymerase 35.9 1.3E+02 0.0027 29.6 6.8 56 281-336 126-191 (404)
449 PF04090 RNA_pol_I_TF: RNA pol 35.8 3E+02 0.0065 24.0 10.2 35 208-242 42-76 (199)
450 PRK11639 zinc uptake transcrip 35.4 1.8E+02 0.004 24.5 7.1 34 89-122 41-74 (169)
451 cd00280 TRFH Telomeric Repeat 35.4 2.2E+02 0.0048 24.4 7.2 30 285-314 119-148 (200)
452 PF11817 Foie-gras_1: Foie gra 35.3 2.9E+02 0.0062 25.0 8.9 52 213-264 184-241 (247)
453 COG0735 Fur Fe2+/Zn2+ uptake r 35.2 2.2E+02 0.0047 23.3 7.2 44 212-255 25-69 (145)
454 PF14689 SPOB_a: Sensor_kinase 34.8 1.2E+02 0.0026 20.6 4.7 22 113-134 28-49 (62)
455 COG2178 Predicted RNA-binding 34.7 3.1E+02 0.0066 23.8 9.1 74 158-240 20-102 (204)
456 cd08332 CARD_CASP2 Caspase act 34.5 1.9E+02 0.0041 21.4 6.4 59 161-223 23-81 (90)
457 COG4715 Uncharacterized conser 34.3 5.3E+02 0.011 26.5 19.9 182 39-238 304-491 (587)
458 PRK10564 maltose regulon perip 34.2 78 0.0017 29.4 4.8 38 209-246 259-297 (303)
459 PF04034 DUF367: Domain of unk 34.1 2.4E+02 0.0052 22.5 7.2 57 277-333 66-123 (127)
460 PF09454 Vps23_core: Vps23 cor 33.9 1.1E+02 0.0024 21.0 4.4 49 205-253 6-54 (65)
461 PF07720 TPR_3: Tetratricopept 33.8 1E+02 0.0023 18.2 4.7 18 314-331 6-23 (36)
462 KOG1308 Hsp70-interacting prot 33.6 29 0.00064 32.6 2.1 89 85-174 126-215 (377)
463 PF08424 NRDE-2: NRDE-2, neces 33.2 4.3E+02 0.0093 25.1 15.5 114 223-339 47-184 (321)
464 KOG4814 Uncharacterized conser 33.2 1.7E+02 0.0036 30.4 7.2 84 288-371 365-456 (872)
465 PRK11639 zinc uptake transcrip 33.2 1.9E+02 0.0042 24.4 6.9 48 246-294 30-77 (169)
466 COG0790 FOG: TPR repeat, SEL1 33.1 4E+02 0.0086 24.6 19.1 49 323-374 205-268 (292)
467 PF11848 DUF3368: Domain of un 32.4 1.3E+02 0.0029 19.0 4.7 34 83-116 12-45 (48)
468 PF12968 DUF3856: Domain of Un 32.4 2.5E+02 0.0055 22.2 6.8 19 350-368 107-125 (144)
469 PF13934 ELYS: Nuclear pore co 32.4 3.7E+02 0.0079 24.0 12.5 42 291-334 92-133 (226)
470 PF10345 Cohesin_load: Cohesin 32.2 6.2E+02 0.013 26.6 28.5 157 9-166 61-250 (608)
471 TIGR02270 conserved hypothetic 32.1 5.2E+02 0.011 25.7 25.6 13 417-429 348-360 (410)
472 COG0735 Fur Fe2+/Zn2+ uptake r 31.8 2.3E+02 0.005 23.2 6.9 61 62-123 10-70 (145)
473 PF11838 ERAP1_C: ERAP1-like C 31.4 4.4E+02 0.0096 24.7 17.5 83 257-339 146-231 (324)
474 PF10475 DUF2450: Protein of u 31.4 1.9E+02 0.0042 27.0 7.2 22 139-160 195-216 (291)
475 KOG4279 Serine/threonine prote 31.3 6.9E+02 0.015 26.8 13.2 29 315-343 372-400 (1226)
476 KOG4279 Serine/threonine prote 31.1 2.9E+02 0.0063 29.4 8.5 26 472-497 491-516 (1226)
477 PHA02875 ankyrin repeat protei 30.9 5.2E+02 0.011 25.3 15.2 207 48-277 9-230 (413)
478 PF09670 Cas_Cas02710: CRISPR- 30.3 5.3E+02 0.011 25.2 10.4 54 151-205 141-198 (379)
479 PF11123 DNA_Packaging_2: DNA 30.0 1.7E+02 0.0037 20.6 4.7 32 88-120 12-43 (82)
480 KOG0403 Neoplastic transformat 30.0 5.7E+02 0.012 25.5 20.4 62 313-374 513-574 (645)
481 COG4976 Predicted methyltransf 29.7 1.1E+02 0.0024 27.3 4.7 56 319-374 5-60 (287)
482 cd08326 CARD_CASP9 Caspase act 29.1 93 0.002 22.7 3.7 62 27-92 19-80 (84)
483 PF10155 DUF2363: Uncharacteri 29.1 3E+02 0.0065 22.0 11.5 95 41-135 21-125 (126)
484 PF15161 Neuropep_like: Neurop 28.7 33 0.00072 22.3 1.1 16 468-484 12-27 (65)
485 smart00777 Mad3_BUB1_I Mad3/BU 28.5 3E+02 0.0066 21.9 8.0 40 328-367 82-123 (125)
486 KOG0991 Replication factor C, 27.8 4.6E+02 0.0099 23.7 12.3 74 101-177 187-274 (333)
487 PF04190 DUF410: Protein of un 27.7 4.8E+02 0.01 23.9 15.6 81 276-372 89-170 (260)
488 PF04090 RNA_pol_I_TF: RNA pol 27.5 4.2E+02 0.0091 23.1 8.2 60 311-370 43-103 (199)
489 COG2912 Uncharacterized conser 27.0 1.9E+02 0.0041 26.5 6.0 60 313-372 185-244 (269)
490 PF08424 NRDE-2: NRDE-2, neces 26.9 5.5E+02 0.012 24.3 16.0 60 90-150 48-108 (321)
491 KOG1524 WD40 repeat-containing 26.8 3.7E+02 0.008 27.3 8.1 89 276-367 572-668 (737)
492 PF04762 IKI3: IKI3 family; I 26.6 8.8E+02 0.019 27.2 12.1 44 320-368 883-926 (928)
493 PF11817 Foie-gras_1: Foie gra 26.6 2.2E+02 0.0048 25.8 6.6 20 44-63 16-35 (247)
494 PF09454 Vps23_core: Vps23 cor 26.5 1.2E+02 0.0026 20.9 3.6 48 35-83 5-52 (65)
495 PF08967 DUF1884: Domain of un 26.2 84 0.0018 22.6 2.8 27 402-428 7-33 (85)
496 PF12069 DUF3549: Protein of u 26.2 5.9E+02 0.013 24.4 12.2 167 8-186 130-308 (340)
497 KOG2581 26S proteasome regulat 26.1 6.4E+02 0.014 24.8 11.9 89 251-340 179-278 (493)
498 KOG0545 Aryl-hydrocarbon recep 25.8 5.1E+02 0.011 23.6 8.3 85 184-268 186-291 (329)
499 cd07153 Fur_like Ferric uptake 25.7 1.6E+02 0.0034 22.7 4.9 45 213-257 6-51 (116)
500 PRK09857 putative transposase; 25.2 5.2E+02 0.011 24.2 8.8 65 312-376 209-273 (292)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-109 Score=869.26 Aligned_cols=512 Identities=41% Similarity=0.725 Sum_probs=497.7
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
.|+.||+.++|.|+.+|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC----------------------
Q 043142 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---------------------- 138 (512)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------- 138 (512)
.+|+..|..+.+.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|...+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999988888888888888888888888888888887665
Q ss_pred -----------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc
Q 043142 139 -----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207 (512)
Q Consensus 139 -----------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 207 (512)
||..||++++.+|++.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDL 286 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (512)
++||+||.+|+++|+.++|+++|++|.+.|+ ||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999998888999999999999999
Q ss_pred HhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 287 LGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+.+|++..+|..|+++|++.|+|++|.+++
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHH
Q 043142 367 KLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSE 446 (512)
Q Consensus 367 ~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
+.|+++|+++.|++||+++++.+|.|++|+..||+.++|+..|.++..+|++.||.||+.+++|++++++++..+.+|||
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hse 631 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSE 631 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCeEEEEeccccCCcchhHHHHHhhhcCceEEEeeCCcccccccccccCCCCC
Q 043142 447 RLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGDYW 512 (512)
Q Consensus 447 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~w 512 (512)
+||++||++.+|+|+||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 632 kla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 632 KLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-105 Score=854.07 Aligned_cols=508 Identities=42% Similarity=0.799 Sum_probs=496.1
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
.|+.||..+||+|+.+|+++|++++|.++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC----------------------
Q 043142 81 KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---------------------- 138 (512)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------- 138 (512)
.+|++.|+++.|.++|+.+.+.|+.|+..+||+|+++|+++|++++|.++|++|.+.+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764
Q ss_pred ----------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch
Q 043142 139 ----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208 (512)
Q Consensus 139 ----------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 208 (512)
||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|++
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~ 555 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV 555 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh
Confidence 8889999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
+||+||.+|+++|+.++|+++|++|.+.|+ ||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999987889999999999999999
Q ss_pred hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
++.|++++|.+++++|+++||..+|++|+.+|..+++.+.|+.+.+++.+++|+++..|..|+++|+..|+|++|.++++
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHH
Q 043142 368 LMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSER 447 (512)
Q Consensus 368 ~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
.|+++|++++||+||+++++++|.|.+|+.+||+.++||..|+++..+|++.||.||+..++++ ++++|+..+++||||
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~ 794 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSER 794 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHH
Confidence 9999999999999999999999999999999999999999999999999999999999988844 778899999999999
Q ss_pred HHHHHcccCCCCCCeEEEEeccccCCcchhHHHHHhhhcCceEEEeeCCcccccccccccCCC
Q 043142 448 LAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITEREITVRDVNRYHHFKDGICSCGD 510 (512)
Q Consensus 448 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 510 (512)
||++||++++|+++||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 795 la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 795 LAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-65 Score=545.62 Aligned_cols=490 Identities=27% Similarity=0.416 Sum_probs=429.7
Q ss_pred CCCCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043142 2 GFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK 81 (512)
Q Consensus 2 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 81 (512)
|..+++.++|+|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.+++
T Consensus 116 ~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-----------------------
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----------------------- 138 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------- 138 (512)
+|+..++++.+.++|..+++.|+.||..++|+|+++|+++|++++|.++|++|.+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997654
Q ss_pred ----------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch
Q 043142 139 ----------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVV 208 (512)
Q Consensus 139 ----------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 208 (512)
||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 8888888888888888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
+||+||.+|++.|++++|+++|++|.+.++ ||..||+.++.+|++.|++++|.++++.+.+ .|+.|+..+|++||++|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999965 59999999999999999
Q ss_pred hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
+++|++++|.++|++|+ ++|..+|++++.+|.+.|+.++|..+|++|.+.-++|..+|..++.+|++.|..+.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999999999997 68999999999999999999999999999987656677788888877777777777777777
Q ss_pred HHHhCCCccCCce-----------------------------eeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 043142 368 LMIDRGIKKSIAC-----------------------------SWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKE 418 (512)
Q Consensus 368 ~m~~~g~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 418 (512)
.|.+.|+.++... +|. .++.++..|++.+++. +++++|++
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n-------~lI~~~~~~G~~~~A~----~lf~~M~~ 582 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-------ILLTGYVAHGKGSMAV----ELFNRMVE 582 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------HHHHHHHHcCCHHHHH----HHHHHHHH
Confidence 7777776544322 332 3456777788887774 78899999
Q ss_pred cCcccCCCccccccchhhhhhhh---hhhHHHHHHHHcccCCCCCCeEEEEeccccCCcchhHHHHHhhhcCc------e
Q 043142 419 AGYVPGTESVFHDVENDEKANMI---CCHSERLAIAFGLINTPDGTRLLITKNLKICDDCHIAIKFISKITER------E 489 (512)
Q Consensus 419 ~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~------~ 489 (512)
.|+.||..++...+..+.+.+.+ ....+.+...+|+.++..+.. ++++.+.++|+.++|.++|.+|+.+ .
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~ 661 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999998876666655544443 333455655788877665444 7999999999999999999999643 2
Q ss_pred EEEeeCCccccccccc
Q 043142 490 ITVRDVNRYHHFKDGI 505 (512)
Q Consensus 490 ~~~~d~~~~h~~~~g~ 505 (512)
.++..|+.+.+.+.|+
T Consensus 662 aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 662 ALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHHHHHcCChHHHH
Confidence 2344555555555443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-60 Score=498.97 Aligned_cols=480 Identities=16% Similarity=0.205 Sum_probs=412.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
.++...++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y 482 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGR 161 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~ 161 (512)
++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.+ ||..||+.++.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765 99999999999999999999999
Q ss_pred HHHHHHHH--cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CchHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 162 ELHGFSWR--HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK----RVVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 162 ~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
++|++|.+ .|+.||..+|++|+.+|+++|++++|.++|+.|.+. +..+||++|.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999987 679999999999999999999999999999999865 458999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHhH
Q 043142 236 EVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM---RVKPDPGV 311 (512)
Q Consensus 236 ~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~ 311 (512)
.|+ ||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++||.+|+++|++++|.++|++| +..||..+
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999 9999999999999999999999999999965 599999999999999999999999999999999 57899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEEEC----
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVK---- 386 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~---- 386 (512)
|++|+.+|++.|++++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.+++++|.+.|+.|+.......++
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 56778999999999999999999999999999999988743322111
Q ss_pred ---------CEEEEEEeCCCCCCChHHH-HHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHHHHHHHcccC
Q 043142 387 ---------NKAHAFLSGDASHPNCDEI-YAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLIN 456 (512)
Q Consensus 387 ---------~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 456 (512)
..+..|-.+ ++..... ......++++|.+.|+.||..++...+ .+.....-......+-..+++.+
T Consensus 802 ~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCC
Confidence 011112111 1111111 122347899999999999987654443 22111111122344555677776
Q ss_pred CCCCCe--EEEEeccccCCcchhHHHHHhhhcCceE
Q 043142 457 TPDGTR--LLITKNLKICDDCHIAIKFISKITEREI 490 (512)
Q Consensus 457 ~~~~~~--~~~~~~~~~~~~~~~a~~~~s~~~~~~~ 490 (512)
.+++.. ..+++.+. ..-++|..++..|..+.|
T Consensus 878 ~~~~~~~y~~Li~g~~--~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFG--EYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred CCcchhhhHHHHHhhc--cChHHHHHHHHHHHHcCC
Confidence 666433 33556542 122579999999888754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-58 Score=483.15 Aligned_cols=477 Identities=20% Similarity=0.290 Sum_probs=416.3
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC-----CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP-----QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
.+...|+++|..|.+.|++++|.++|+.|. .||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999985 368899999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCCh
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAAL 157 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~ 157 (512)
+.+|++.|+++.|.++|+.|. .||..+||+++.+|++.|++++|.++|++|.+.+ ||..||+.++.+|+..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999985 5899999999999999999999999999998765 8899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
+.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHH
Q 043142 238 Q-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316 (512)
Q Consensus 238 ~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 316 (512)
+ ||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++|+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI 398 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALI 398 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHH
Confidence 9 99999999999999999999999999999755 999999999999999999999999999999997 68999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhccChhHHHHHHHHHHh-CCCccCCceeeEEECCEEEEEEe
Q 043142 317 NSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYARAANWEGVAKLRKLMID-RGIKKSIACSWIEVKNKAHAFLS 394 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~ 394 (512)
.+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+..... .++.
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~ 470 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIE 470 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHH
Confidence 99999999999999999999877 56788999999999999999999999999976 68887764322 2455
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhh---hhhHHHHHHHHcccCCCCCCeEEEEecccc
Q 043142 395 GDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMI---CCHSERLAIAFGLINTPDGTRLLITKNLKI 471 (512)
Q Consensus 395 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 471 (512)
+....++.++++. + +++.++.||...+..-+..+...+.+ ....++ .+++.+...++.+.+++.+..
T Consensus 471 ~l~r~G~~~eA~~----~---~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 471 LLGREGLLDEAYA----M---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred HHHhcCCHHHHHH----H---HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHh
Confidence 6667777777753 3 34568888876433333332222211 111222 245555544566678888999
Q ss_pred CCcchhHHHHHhhhcCceEEE-------eeCCccccccccc
Q 043142 472 CDDCHIAIKFISKITEREITV-------RDVNRYHHFKDGI 505 (512)
Q Consensus 472 ~~~~~~a~~~~s~~~~~~~~~-------~d~~~~h~~~~g~ 505 (512)
+|+..+|.+++..|..+.+.. --.+..|.|-.|-
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999885421 2224556676553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.1e-56 Score=469.29 Aligned_cols=375 Identities=14% Similarity=0.223 Sum_probs=355.0
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCC----CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIP----QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
.||..+||.|+.+|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4899999999999999999999999999996 479999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC----CCChhHHHHHHHHHhccC
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER----DPSEATLVTVISASADIA 155 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~pd~~t~~~ll~~~~~~~ 155 (512)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|... .||..||+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999763 599999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCChHHHHHHHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----KRVVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 678999999999999999999999999
Q ss_pred HhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCC
Q 043142 232 KMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM---RVKP 307 (512)
Q Consensus 232 ~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p 307 (512)
+|.+.|. ||..+|+.|+.+|++.|++++|.++|+.|. ..|+.||..+|++||.+|++.|++++|.++|++| ++.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999 999999999999999999999999999996 4599999999999999999999999999999998 6889
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHH----hcc-------------------ChhHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHDAGNYVILSNIYA----RAA-------------------NWEGVA 363 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~a~ 363 (512)
|..||++++.+|.+.|++++|.+++++|.+.+ .++..+|..|+.+|. +++ ..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 99999999999999999999999999999977 557788999887643 222 236799
Q ss_pred HHHHHHHhCCCccCCc
Q 043142 364 KLRKLMIDRGIKKSIA 379 (512)
Q Consensus 364 ~~~~~m~~~g~~~~~~ 379 (512)
.+|++|.+.|+.|+..
T Consensus 833 ~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 833 MVYRETISAGTLPTME 848 (1060)
T ss_pred HHHHHHHHCCCCCCHH
Confidence 9999999999998865
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=5.3e-30 Score=199.54 Aligned_cols=106 Identities=66% Similarity=1.116 Sum_probs=95.8
Q ss_pred ceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhHHHHHH
Q 043142 379 ACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEK--------ANMICCHSERLAI 450 (512)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 450 (512)
+++|+++ |.|++|+.+||+. .+..++...||.|++..++|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5799876 8999999999997 456677889999999999998776654 5678999999999
Q ss_pred HHcccCCCCCCeEEEEecc-ccCCcchhHHHHHhhhcCceEEEeeCCcccccc
Q 043142 451 AFGLINTPDGTRLLITKNL-KICDDCHIAIKFISKITEREITVRDVNRYHHFK 502 (512)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~s~~~~~~~~~~d~~~~h~~~ 502 (512)
+||++++ +++||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999987 899999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.1e-24 Score=232.86 Aligned_cols=362 Identities=13% Similarity=0.060 Sum_probs=249.5
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 82 (512)
+...+..+...|.+.|++++|.+.|+++.. .+..++..+...+.+.|++++|...|+++...+ +.+...+..+...
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHH
Confidence 455667777778888888888888877642 356677777777777888888888888776643 2244456667777
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~ 161 (512)
+...|++++|.++++.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.+|+ ...+..+...+...|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 777778888887777776654 556677777777777778888888877777776663 345666677777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..+..+.+.. +.+..++..++..+.+.|++++|.++++.+.+. +...|..+...+...|++++|+..|+++....+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 7777777653 445667777777777777777777777776542 345566666777777777777777777766544
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALL 316 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll 316 (512)
+..++..+..++.+.|++++|...++.+.+. .+.+...+..+...|.+.|++++|...|+++ ... ++...++.+.
T Consensus 735 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 811 (899)
T TIGR02917 735 -SSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA 811 (899)
T ss_pred -CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2255556667777777777777777776643 1235666777777777777777777777666 222 3445666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 67777776 6677777777777776666666677777777777777777777766554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3.5e-23 Score=226.24 Aligned_cols=363 Identities=14% Similarity=0.092 Sum_probs=270.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
......++..|.+.|++++|.++++.+.. ++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 34556677778888888888888877643 356778888888888888888888888887643 12334566677777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~ 162 (512)
...|++++|.++++.+++.. +.+..++..+...|.+.|+.++|...|+++.+.+|+. ..+..+...+...|++++|..
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 78888888888888887765 4567777778888888888888888888887766643 456667777788888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
+++.+.+.. +.+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++....+.
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888777643 45667778888888888888888888877653 23566777777788888888888888887776666
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNS 318 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 318 (512)
+..++..+...+...|++++|..+++.+.+. ..++...+..+...+.+.|++++|.+.++++ ...|+..++..+...
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 6777777778888888888888888877643 1335666777777788888888888888776 345666677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+...|++++|.+.++++++..|+++..+..++..|...|++++|.++|+++.+...
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 78888888888888888887787777777888888888888888888887776543
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2e-21 Score=183.64 Aligned_cols=360 Identities=16% Similarity=0.177 Sum_probs=312.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHH
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPF-ALKAC 83 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~ 83 (512)
.+|+.+.+.+-..|++++|+.+++.+.+ ..+..|-.+..++...|+.+.|.+.|.+.++ +.|+.+...+ +....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHH
Confidence 4788899999999999999999998754 3678999999999999999999999999887 4576554333 33445
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~ 162 (512)
...|++++|...+.+.++.. +-=..+|+.|...+-..|++..|+.-|++....+|+. ..|..|...+...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 56789999999999888874 2335689999999999999999999999999999976 579999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
.|..+.... +....++..+...|-..|.++.|+..|++..+.+ ...||.|..++-..|+..+|.+.|.+.....+.
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 998887653 3456777888889999999999999999987644 579999999999999999999999999887776
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll 316 (512)
...+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..+++. +++|+.. .++.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 66788899999999999999999999887 45674 567889999999999999999999887 7888866 999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..|...|+.+.|.+.+.+++..+|.-..++..|..+|-.+|+..+|++-++...+...
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999889999999999999999999999998876543
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.4e-20 Score=185.30 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=189.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhC
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD---VFVGAALIDMYAKC 121 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 121 (512)
..+...|++++|+..|.++.+.+ |+ ..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34455677777777777776642 33 33566666666667777777777766665431111 23455666666666
Q ss_pred CChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 122 SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
|++++|.++|+++.+.+| .+..+++.++.+|.+.|++++|.+.|+.
T Consensus 121 g~~~~A~~~~~~~l~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD----------------------------------FAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred CCHHHHHHHHHHHHcCCc----------------------------------chHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 666666666666655443 2333444455555555555555555555
Q ss_pred cCCCC--------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 202 LREKR--------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 202 m~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
+.+.+ ...|..+...+.+.|++++|...|+++.+..+.+...+..+...+.+.|++++|.++++++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 43221 1123455566667777777777777776654444556666777777777777777777777643
Q ss_pred CCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 274 DPS--VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 274 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
.|+ ..+++.++.+|.+.|++++|...++++ ...|+...+..+...+...|++++|..+++++++..|++. .+..++
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 333 345677777888888888888888776 3456666667778888888888888888888888877665 555555
Q ss_pred HHHHh---ccChhHHHHHHHHHHhCCCccCCc
Q 043142 351 NIYAR---AANWEGVAKLRKLMIDRGIKKSIA 379 (512)
Q Consensus 351 ~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 379 (512)
..+.. .|+.+++..++++|.+++++++|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55443 458888888888888888887775
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.2e-20 Score=183.95 Aligned_cols=293 Identities=14% Similarity=0.107 Sum_probs=236.8
Q ss_pred HHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC---cchHHHHHHHHhccC
Q 043142 14 VHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD---NFTFPFALKACSALS 87 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~ 87 (512)
...+...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ...+..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3456678999999999999864 3 556889999999999999999999999987532222 245778888999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
+++.|..+|..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+|+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------- 177 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----------------------- 177 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------
Confidence 9999999999998764 5678899999999999999999999999998766532110
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHH
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHIT 243 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t 243 (512)
.....+..+...+.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|.++|+++....+ ....+
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 00123455677778888888888888887542 345777788889999999999999999987665 44567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHH-
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKL- 321 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~- 321 (512)
+..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 888999999999999999999998743 677777789999999999999999999876 567999999988887764
Q ss_pred --cCCHHHHHHHHHHHHhcC
Q 043142 322 --HGHVKLAELALEKLIELE 339 (512)
Q Consensus 322 --~g~~~~A~~~~~~~~~~~ 339 (512)
.|+.+++..+++++++..
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred cCCccchhHHHHHHHHHHHH
Confidence 568899999999888643
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.7e-18 Score=179.74 Aligned_cols=357 Identities=12% Similarity=0.030 Sum_probs=282.2
Q ss_pred HHHHHHHHHccCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhcc
Q 043142 10 ATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSAL 86 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 86 (512)
+..+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 4466778889999999999999864 467888999999999999999999999999875 454 45788888999999
Q ss_pred CChHHHHHHHHHHHHhCC-----------------------------CCChhHHHHH-----------------------
Q 043142 87 SAIEEGRRIHEDVIRNKW-----------------------------ETDVFVGAAL----------------------- 114 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~-----------------------------~~~~~~~~~l----------------------- 114 (512)
|++++|...+..+...+- +++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876544332210 1110011100
Q ss_pred -------HHHH------HhCCChHHHHHHHHhhhhCC---CC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchH
Q 043142 115 -------IDMY------AKCSCVVNARQVFDKILERD---PS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVK 177 (512)
Q Consensus 115 -------i~~~------~~~g~~~~A~~~~~~m~~~~---pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 177 (512)
+..+ ...+++++|.+.|++..+.+ |+ ...+..+...+...|++++|...++..++.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 1100 11357889999999988753 43 3457777777889999999999999998764 33466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
.+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++.....+.+...+..+..++.+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 888899999999999999999998754 34678899999999999999999999999988777778888899999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh--------HHHHHHHHHHHcCC
Q 043142 255 GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG--------VWGALLNSCKLHGH 324 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~--------~~~~ll~~~~~~g~ 324 (512)
|++++|...|+..++. .| +...++.+...+...|++++|++.|++. ...|+.. .++..+..+...|+
T Consensus 447 g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 447 GSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999743 45 5788999999999999999999999886 3444311 12222233444699
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+++|.++++++++.+|.+...+..++.++...|++++|.+.|++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999998889999999999999999999999988654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.2e-18 Score=180.46 Aligned_cols=321 Identities=10% Similarity=-0.031 Sum_probs=149.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|.+.++.+++.. +.+...+..+...+.+.|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3444445555555555555554432221 1223333333444555555555555555443 3334444445555555555
Q ss_pred hHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 124 VVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
+++|...|+++.+.+|+. ..+..+...+...|++++|...++.+......+ ...+..+ ..+.+.|++++|..+++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 555555555555544432 234444444555555555555555444332211 1122222 1244455555555555554
Q ss_pred CCCC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHhcCCC
Q 043142 203 REKR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE----GRMFFESMVRDYHID 274 (512)
Q Consensus 203 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~ 274 (512)
.+.+ ...+..+...+.+.|++++|+..|++.....+.+...+..+...+...|++++ |...|+...+ +.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~ 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FN 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hC
Confidence 3321 12222333444555555555555555554444344444445555555555543 4555555442 23
Q ss_pred C-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 275 P-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 275 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
| +...+..+...+.+.|++++|+..+++. ...|+. ..+..+...+...|++++|...++++.+.+|.++..+..+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3 3444555555555555555555555444 223332 244444455555555555555555555555544433333444
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
++...|++++|...+++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.6e-18 Score=179.50 Aligned_cols=342 Identities=11% Similarity=0.007 Sum_probs=279.9
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 88 (512)
.+....+.|++++|+.+++.... .+...+..++.+....|++++|+..|+++... .|+ ...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Confidence 44556678999999999988643 35666777778888899999999999999885 454 4567778888999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
+++|...++.+++.. +.+...+..+...|...|++++|...++.+....|+.......+..+...|++++|...++.++
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999874 5567888999999999999999999999998887766554444455788999999999999988
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHH----HHHHHHHhHHCCCCCH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTK----ALDLFEKMKDEVQPDH 241 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~p~~ 241 (512)
+....++......+...+.+.|++++|...|+...+. +...+..+...|.+.|++++ |+..|++.....+.+.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 8754445555666778899999999999999997653 45778889999999999986 8999999998877778
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhH-HHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGV-WGALLNS 318 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~ 318 (512)
..+..+...+...|++++|...++...+. .| +...+..+...|.+.|++++|+..++++ ...|+... +..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 88999999999999999999999999753 56 5667788899999999999999999988 35676544 3445677
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+...|+.++|...|+++++..|.+. ...+++|...+.+..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 8999999999999999999998764 23445666666655543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=5.5e-19 Score=167.36 Aligned_cols=350 Identities=15% Similarity=0.114 Sum_probs=299.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC--CCchHHHH-HHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ--RNLFLWNV-LIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKA 82 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 82 (512)
+..|..|...|...|+.+.|.+.|.+..+ |+.....+ +...+-..|+.++|...|.+.++. .|. ...|+.|...
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~ 227 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCV 227 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchH
Confidence 45788899999999999999999988765 44443333 334445579999999999998874 444 4578999989
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~ 161 (512)
+-..|+...|.+-|++.++.. +.=...|-.|.+.|...+.+++|...+.+.....|+. +.+..+...|...|.++.|.
T Consensus 228 f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 999999999999999998875 3335678889999999999999999999998888865 56888888899999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..|++.++.. +.-...|+.|..++-..|++.+|.+.|.....-. ..+.+.|...|...|.+++|..+|.....-.+
T Consensus 307 ~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 307 DTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 9999998864 3346789999999999999999999999977533 57888999999999999999999999887655
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGAL 315 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l 315 (512)
--...++.|...|.+.|++++|...|++.+ .++|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|... ..+.|
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 556778999999999999999999999987 67895 678999999999999999999999877 6777655 88999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
.+.|...|++.+|+..++.++++.|+.+.+|..++....-..+|.+-.
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 999999999999999999999999999999999988877777776633
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.7e-17 Score=183.43 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=231.9
Q ss_pred HHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chH------------
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTF------------ 76 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------------ 76 (512)
+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|+..|++..+....... ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34455667777777777766532 2 5566777777777777777777777776654321111 011
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHH---------
Q 043142 77 PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVT--------- 146 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~--------- 146 (512)
......+...|++++|.+.++++++.. +.+...+..|...|.+.|++++|++.|+++.+.+|+.. .+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 111234556677777777777776664 34555666667777777777777777777766665432 1111
Q ss_pred ---------------------------------HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 043142 147 ---------------------------------VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193 (512)
Q Consensus 147 ---------------------------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 193 (512)
+...+...|++++|.+.++++++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 1122334677777777777777654 334556666777777777777
Q ss_pred HHHHHHHhcCC--C-CchHHHHH--------------------------------------------HHHHHHcCChHHH
Q 043142 194 VARNLFEQLRE--K-RVVSWNAM--------------------------------------------ITGYAMHGHSTKA 226 (512)
Q Consensus 194 ~A~~~~~~m~~--~-~~~~~~~l--------------------------------------------i~~~~~~g~~~~A 226 (512)
+|...|+++.+ | +...+..+ ...+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777776542 2 22222222 3334455555555
Q ss_pred HHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C
Q 043142 227 LDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-R 304 (512)
Q Consensus 227 ~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 304 (512)
+.+++ ..+++...+..+...+.+.|++++|+..|+.+.+. .| +...+..++..|...|++++|++.++.. .
T Consensus 593 ~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 55554 22345556677888888999999999999988753 56 6788888999999999999999999877 3
Q ss_pred CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhccChhHHHHHHHHHHh-CCCc
Q 043142 305 VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA------GNYVILSNIYARAANWEGVAKLRKLMID-RGIK 375 (512)
Q Consensus 305 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~ 375 (512)
..|+ ...+..+..++...|++++|.++++++++..|+++ ..+..+..++...|++++|.+.++.... .|+.
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 4444 34677778888889999999999999988765543 2555668888999999999999887653 3443
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=2.5e-17 Score=182.08 Aligned_cols=362 Identities=12% Similarity=0.028 Sum_probs=254.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC--CCch-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ--RNLF-LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACS 84 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~ 84 (512)
.+...+..+-....++.|...+++... .|.. ........+...|++++|+..|++..+. .| +...+..+..++.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 444455555555567778888866432 1221 1223456778899999999999999885 34 5667888889999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC-hh------------HHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETD-VF------------VGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISA 150 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~-~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~ 150 (512)
+.|++++|+..|++.++...... .. ....+...+.+.|++++|+..|+++.+.+|+. ..+..+...
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999988753221 11 11233567889999999999999999998854 467778888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCc-----------------------------------------hHHHHHHHHHHHhc
Q 043142 151 SADIAALPQGRELHGFSWRHRFELN-----------------------------------------VKVKTALVDMYAKC 189 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~-----------------------------------------~~~~~~li~~y~~~ 189 (512)
+...|++++|.+.|+.+++...... ...+..+...+...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999999886532110 11345688889999
Q ss_pred CCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043142 190 GLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFES 266 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 266 (512)
|++++|.+.|++..+. +...+..+...|.+.|++++|...|+++....+.+...+..+...+...++.++|...++.
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999998653 3456778889999999999999999999876664444443333444555666666555554
Q ss_pred HHHhc--------------------------------------CCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 267 MVRDY--------------------------------------HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 267 ~~~~~--------------------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
+.... ..+++...+..+...|.+.|++++|++.+++. ...|
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P 634 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP 634 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 32110 01224445566666777777777777777666 3334
Q ss_pred C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 308 D-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 308 ~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+ ...+..+...+...|++++|++.++++.+..|+++..+..+..++...|++++|.++++.+.+.
T Consensus 635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 635 GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3 4466677777777777777777777777777766666667777777777777777777776654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=6.5e-17 Score=171.05 Aligned_cols=363 Identities=10% Similarity=0.052 Sum_probs=238.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKA 82 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 82 (512)
+....-.+......|+.++|++++.+..+ .+...+..+...+...|++++|.++|++..+. .|+ ...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33444455555556666666666655432 23334555556666666666666666665543 232 2334444455
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccCCh----
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISASADIAAL---- 157 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~~---- 157 (512)
+...|++++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+..|+... +..+..++...+..
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 556666666666666665553 33344 555555666666666666666666665554432 22223333222332
Q ss_pred ------------------------------------------HHHHHHHHHHHHc-CCCCchH-HH----HHHHHHHHhc
Q 043142 158 ------------------------------------------PQGRELHGFSWRH-RFELNVK-VK----TALVDMYAKC 189 (512)
Q Consensus 158 ------------------------------------------~~a~~~~~~~~~~-g~~~~~~-~~----~~li~~y~~~ 189 (512)
+.|.+.++.+.+. ...|+.. .+ ...+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 4455555555543 1122211 11 1112344577
Q ss_pred CCHHHHHHHHHhcCCCC--chH--HHHHHHHHHHcCChHHHHHHHHHhHHCCCCC----HHHHHHHHHHHhcCCCHHHHH
Q 043142 190 GLVKVARNLFEQLREKR--VVS--WNAMITGYAMHGHSTKALDLFEKMKDEVQPD----HITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~----~~t~~~ll~a~~~~g~~~~a~ 261 (512)
|++++|+..|+.+.+.+ ... -..+...|...|++++|+..|+++.+..+.+ ......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988643 122 1225678999999999999999987655411 345666777889999999999
Q ss_pred HHHHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHH
Q 043142 262 MFFESMVRDYH----------IDPS---VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 262 ~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 326 (512)
.+++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999975311 0122 234567788899999999999999987 3344 4558899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+|++.++++++.+|+++..+..++..+...|++++|..+++.+.+..
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998754
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.5e-16 Score=165.16 Aligned_cols=336 Identities=14% Similarity=0.054 Sum_probs=265.2
Q ss_pred CCCchhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCC-----------
Q 043142 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG----------- 68 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------- 68 (512)
+.|++..|..+...|.+.|++++|++.++...+ .++..|..+..+|...|++++|+.-|......+
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 467888999999999999999999999998653 366789999999999999999987665432211
Q ss_pred -----------------CCCC-cchHHHHHHH------------------------------------HhccCChHHHHH
Q 043142 69 -----------------LVPD-NFTFPFALKA------------------------------------CSALSAIEEGRR 94 (512)
Q Consensus 69 -----------------~~p~-~~t~~~ll~~------------------------------------~~~~~~~~~a~~ 94 (512)
..|. ...+..+... ....+++++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 0111 0111111000 011256888999
Q ss_pred HHHHHHHhC-C-CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043142 95 IHEDVIRNK-W-ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHR 171 (512)
Q Consensus 95 ~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 171 (512)
.|+..++.+ . +.+...++.+...+...|++++|+..|++..+.+|+. .+|..+...+...|++++|...++.+++..
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999988765 2 3355678888899999999999999999999999874 478888888999999999999999998874
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 172 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
+.+..++..+...|...|++++|...|++..+. +...|..+...+.+.|++++|+..|++.....+.+...+..+.
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 456788999999999999999999999998643 3567888889999999999999999999887666678888899
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCCCh-h-------HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDPSV-Q-------HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNS 318 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~ 318 (512)
..+...|++++|...|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+.. .+..+...
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~ 551 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQL 551 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999874 34421 1 1222233344579999999999886 5556554 78899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
+...|++++|.+.|+++.++.+..
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999987653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=3.2e-16 Score=165.80 Aligned_cols=332 Identities=11% Similarity=0.016 Sum_probs=255.8
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
..--.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3334445667788999999999999987622 2334468889999999999999999999998875 5567778889999
Q ss_pred HHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 043142 118 YAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 197 (512)
+.+.|++++|...+++..+..|+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++.+.|..++|.+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 999999999999999999988866557778888899999999999999999875 3455566667777777777776665
Q ss_pred HHHhcCC-------------------------------------------------CCch---HH----HHHHHHHHHcC
Q 043142 198 LFEQLRE-------------------------------------------------KRVV---SW----NAMITGYAMHG 221 (512)
Q Consensus 198 ~~~~m~~-------------------------------------------------~~~~---~~----~~li~~~~~~g 221 (512)
.++.... .++. .+ ...+..+...|
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 5553222 0110 01 01123456778
Q ss_pred ChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHH
Q 043142 222 HSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 297 (512)
+.++|+..|+++.+.+. |+.. ...+..++...|++++|+.+|+.+.+.....+ .......|..++.+.|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988764 4332 22357789999999999999999874321111 1345666777889999999999
Q ss_pred HHHHhCC-CCC-------------C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChh
Q 043142 298 DLIMQMR-VKP-------------D---PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 298 ~~~~~m~-~~p-------------~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
.+++++. ..| + ...+..+...+...|+.++|++.++++.+..|.++..+..++.++...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 9998872 223 2 1244567778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 043142 361 GVAKLRKLMIDRG 373 (512)
Q Consensus 361 ~a~~~~~~m~~~g 373 (512)
+|++.+++..+..
T Consensus 411 ~A~~~l~~al~l~ 423 (765)
T PRK10049 411 AAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988755
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=5.7e-15 Score=156.76 Aligned_cols=214 Identities=11% Similarity=0.023 Sum_probs=164.3
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--KRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55556666555555443 3433333444555678888888888887653 3345566677778888888889998888
Q ss_pred hHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-
Q 043142 233 MKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG- 310 (512)
Q Consensus 233 m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 310 (512)
..+..+++...+..+.......|++++|...+++.++ +.|+...+..+...+.+.|+.++|+..+++. ...|+..
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8876654444444555556667999999999998873 4678888889999999999999999999887 4566544
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+..+...+...|+.++|+..++++++..|.++..+..+..++...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777788889999999999999999999999999999999999999999999999999887654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=5.1e-14 Score=146.62 Aligned_cols=351 Identities=13% Similarity=0.073 Sum_probs=260.1
Q ss_pred HHHccCChHHHHHHHccCCC--CCc-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH-HHH--HHHHhccCCh
Q 043142 16 LYSACDCLHNAHQLFDRIPQ--RNL-FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF-PFA--LKACSALSAI 89 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~l--l~~~~~~~~~ 89 (512)
...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+...+ ..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45678999999999988765 332 123378888888899999999999887 3433322 222 4467778999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWR 169 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (512)
++|.++++++++.. +.++.++..++..|...++.++|++.++++...+|+...+..++..+...++..+|.+.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998886 44567777888889999999999999999999888866665454444456666668889988888
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----------------------------------------------
Q 043142 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---------------------------------------------- 203 (512)
Q Consensus 170 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---------------------------------------------- 203 (512)
.. +.+...+..++....+.|-...|.++..+-+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 5566677777777777776666655544322
Q ss_pred --C---CCc---hHH----HHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 043142 204 --E---KRV---VSW----NAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRD 270 (512)
Q Consensus 204 --~---~~~---~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 270 (512)
. +++ ..| --.+-++...|+..++++.|+.+...+. .-..+-..+.++|...+++++|..+|..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 0 000 011 1234466778889999999999998875 23347778899999999999999999998654
Q ss_pred cC----CCCChhHHHHHHHHHhccCChHHHHHHHHhCCC-C-------------CC--Hh-HHHHHHHHHHHcCCHHHHH
Q 043142 271 YH----IDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRV-K-------------PD--PG-VWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 271 ~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-------------p~--~~-~~~~ll~~~~~~g~~~~A~ 329 (512)
.+ ..++......|.-+|...+++++|..+++++.- . |+ -. ....++..+.-.|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 32 122444467888999999999999999988821 1 22 12 3344566678899999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+.++++....|.|+.....+.+++...|.+.+|.+.++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999776554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.1e-13 Score=144.10 Aligned_cols=359 Identities=11% Similarity=0.045 Sum_probs=270.4
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCch-HHHHH--HHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRNLF-LWNVL--IRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
.++..+...|+.++|+..+++...|+.. .+..+ ...|...|++++|+++|+++.+.... +...+..++..+...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCC
Confidence 8889999999999999999998876433 33333 45778889999999999999886422 34566677788899999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccCChHHHHHHH---
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIAALPQGRELH--- 164 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~--- 164 (512)
.++|++.++.+.+. .|+...+-.++..+...++..+|++.++++.+.+|+.. .+..+..+..+.|....|.++.
T Consensus 152 ~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 152 GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999999876 45555565555556557777779999999999987543 3445555555554443333332
Q ss_pred ---------------------------------------------HHHHHc-CC-CCchHH-HH---HHHHHHHhcCCHH
Q 043142 165 ---------------------------------------------GFSWRH-RF-ELNVKV-KT---ALVDMYAKCGLVK 193 (512)
Q Consensus 165 ---------------------------------------------~~~~~~-g~-~~~~~~-~~---~li~~y~~~g~~~ 193 (512)
+.+... +- ++.... .. -.+-++.+.|++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 222221 11 211111 12 2344667889999
Q ss_pred HHHHHHHhcCCCC--ch--HHHHHHHHHHHcCChHHHHHHHHHhHHCC-----C-CCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 194 VARNLFEQLREKR--VV--SWNAMITGYAMHGHSTKALDLFEKMKDEV-----Q-PDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 194 ~A~~~~~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~-p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
++++.|+.+.... +. +--++..+|...+++++|+.+|+++.... . ++......|..++..++++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998544 33 44567899999999999999999996643 1 3444457899999999999999999
Q ss_pred HHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHH
Q 043142 264 FESMVRDYH----------IDPS---VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 264 ~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A 328 (512)
++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999975211 0122 234556788899999999999999998 3334 666889999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
++.++.+..++|.+..+....+..+...|+|.+|.++.+.+.+..
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999998776543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.2e-13 Score=146.82 Aligned_cols=348 Identities=11% Similarity=0.034 Sum_probs=259.5
Q ss_pred CChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-C-CCCCcchHHHHHHHHhccCC---hHHH
Q 043142 21 DCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-G-LVPDNFTFPFALKACSALSA---IEEG 92 (512)
Q Consensus 21 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~---~~~a 92 (512)
+...+|.+.+..|.+. +....-.+.-..++.|+.++|.++|+..... + ..++.....-++..+.+.+. ...+
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 5556666665555432 4444444444556778888888888877552 1 11222223355555555544 2222
Q ss_pred ----------------------HHHHHHHHHh-CC-CC--ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH
Q 043142 93 ----------------------RRIHEDVIRN-KW-ET--DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 93 ----------------------~~~~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
.......... +. ++ +...|..+..++.. ++.++|...|.+.....|+......
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~ 514 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRA 514 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHH
Confidence 2222222221 11 34 67788888888887 8999999999999888898766555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHH---HHHHHcCCh
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMI---TGYAMHGHS 223 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~ 223 (512)
+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|...|+...+.+...++... ......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 556667899999999999987654 344455667788899999999999999988765543333333 333445999
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHh
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQ 302 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (512)
++|+..|++..+.. |+...+..+..++.+.|++++|...++...+ ..| +...++.+...+...|+.++|+..+++
T Consensus 593 ~eAl~~~~~AL~l~-P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 593 ELALNDLTRSLNIA-PSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998654 5678899999999999999999999999974 467 677888888999999999999999998
Q ss_pred C-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 303 M-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 303 m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
. ...|+ ...+..+..++...|++++|+..++++++..|.+..+.........+..+++.+.+-+++--..++.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 7 45564 4589999999999999999999999999999999988888899999999999999988877666554
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.8e-13 Score=122.18 Aligned_cols=286 Identities=14% Similarity=0.169 Sum_probs=223.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC----ChhHHHHHHHHHhcc
Q 043142 79 ALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP----SEATLVTVISASADI 154 (512)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p----d~~t~~~ll~~~~~~ 154 (512)
+..++-.....+++.+=.......|++.+...-+-...+.-...+++.|+.+|+++.+.+| |..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3455666667788888888888888877777767666777788999999999999999887 567888777554332
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
..+.---+....+ . +--+.|...+.+-|+-.++.++|...|++..+-| ...|+.|..-|....+...|++-++
T Consensus 313 skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHHh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2222111111111 1 2234567778888999999999999999987655 5789999999999999999999999
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCC
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM--RVKPD 308 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~ 308 (512)
...+-++-|-..|-.|.++|.-.+...=|+-+|++.. .++| |...|.+|.+.|.+.+++++|++.|++. .-..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 9999888899999999999999999999999999886 5678 8899999999999999999999999887 22345
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIEL-------EPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
...+..|...+-+.++.++|...|++-++. +|....+-.-|..-+.+.+++++|..+......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 578889999999999999999999998862 233333444577888899999999887665543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.8e-15 Score=140.12 Aligned_cols=253 Identities=18% Similarity=0.168 Sum_probs=113.7
Q ss_pred HHHHHHHhCCChHHHHHHHHhh-hhC-CCChhHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 043142 113 ALIDMYAKCSCVVNARQVFDKI-LER-DPSEATLVT-VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC 189 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m-~~~-~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 189 (512)
.+..++.+.|++++|++++++. ... +|+...|.. +...+-..++.+.|.+.++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466666777777777777443 333 344444433 333445567777777777777765532 55566677776 688
Q ss_pred CCHHHHHHHHHhcCC--CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 190 GLVKVARNLFEQLRE--KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 190 g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
+++++|.++++..-+ ++...+..++..+.+.++++++.+++++...... ++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877643 4466777888889999999999999999876553 567778888889999999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
+.++. .| |......++..+...|+.+++.++++... ...|...|..+..++...|+.++|...+++..+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99854 67 57888999999999999999888887762 23455688999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987754
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.5e-12 Score=114.26 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=236.3
Q ss_pred cCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 043142 32 RIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVG 111 (512)
Q Consensus 32 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 111 (512)
+..+++..++..||.++++--..+.|.++|++..+...+.+..+||.+|.+-+- ..+.++..+|+...+.||..++
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH
Confidence 333446678999999999999999999999999888888888899999877543 3347888889988889999999
Q ss_pred HHHHHHHHhCCChHHHHH----HHHhhhhCC--CChhHHHHHHHHHhccCChHH-HHHHHHHHHH----cCC----CCch
Q 043142 112 AALIDMYAKCSCVVNARQ----VFDKILERD--PSEATLVTVISASADIAALPQ-GRELHGFSWR----HRF----ELNV 176 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~----~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~----~~~~ 176 (512)
|+++.+.++.|+++.|.+ ++.+|.+.+ |...+|..+|..+.+-++..+ +..+...+.. ..+ +.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998876554 455666654 777889988888888777654 3344333332 122 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREKR-----------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITF 244 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~ 244 (512)
..+...++.+.+..+.+.|.++-.-....+ ..-|..+....++....+.-+..|+.|.-.-. |+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 566677788888889988888876654321 13455677778888888999999999988777 999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-C--------hHH-----HHHHHH-------hC
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG-R--------LDE-----ACDLIM-------QM 303 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~m 303 (512)
..++.|..-.+.++-..+++..++ .+|..-......-+...+++.. . +.. |..+++ ++
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999998888888888875 4454333333333333333332 1 000 111111 12
Q ss_pred -CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 304 -RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE---PHDAG--NYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 304 -~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
...-.....+...--+.+.|..++|-+++..+.+.+ |..+. +..-+.+.-........|..+++.|...+..
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 122334455666666788999999999999886543 43332 2234555556677888899999988776654
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=4.8e-13 Score=123.05 Aligned_cols=314 Identities=12% Similarity=0.112 Sum_probs=219.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC------------C
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWET------------D 107 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~ 107 (512)
..|.+.-.+.+.|+++.|+.-|+...+. .||-.+--.|+-++..-|+.++..+.|.+++.....+ +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3455555677888888888888887764 4776654445555556688888888888887642222 2
Q ss_pred hhHHHHH---------------------------------------------------------------HHHHHhCCCh
Q 043142 108 VFVGAAL---------------------------------------------------------------IDMYAKCSCV 124 (512)
Q Consensus 108 ~~~~~~l---------------------------------------------------------------i~~~~~~g~~ 124 (512)
....|.- ..-|.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 1111110 0123356777
Q ss_pred HHHHHHHHhhhhCCC-----------------------ChhHH----------H-----HHHHHHhccCChHHHHHHHHH
Q 043142 125 VNARQVFDKILERDP-----------------------SEATL----------V-----TVISASADIAALPQGRELHGF 166 (512)
Q Consensus 125 ~~A~~~~~~m~~~~p-----------------------d~~t~----------~-----~ll~~~~~~~~~~~a~~~~~~ 166 (512)
+.|++++.-..+.+. +...| + .-.+.....|++++|.+.|.+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 777776666555440 00011 0 001111235778888888888
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHH
Q 043142 167 SWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHIT 243 (512)
Q Consensus 167 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t 243 (512)
.+...-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...++.+|++++.+....-+.|+..
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 77654333333333 2334567788888888887654 3556666667778888888888988887776554467888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHH-H
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSC-K 320 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~ 320 (512)
+..|...|-+.|+-.+|.+.+-.- +..-| +..+..-|..-|....-+++|+.+|++.. ++|+..-|..++..| +
T Consensus 595 lskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888999999999999998877643 23344 88888888888999999999999999884 789999999998776 6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
+.|++++|..+++......|.+......|++.+...|..
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 789999999999999999999999999999998887753
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=6.2e-12 Score=125.35 Aligned_cols=328 Identities=16% Similarity=0.166 Sum_probs=205.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 043142 52 GPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVF 131 (512)
Q Consensus 52 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 131 (512)
|+.++|.+++.+.++... .+...|.+|...+-..|+.+++...+-.+--.. +.|...|-.+.+...+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 666666666666555421 233455566666666666665554443222222 334455555656666666666666666
Q ss_pred HhhhhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH----HHHHHHHhcCCHHHHHHHHHhcCC--
Q 043142 132 DKILERDPSEAT-LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT----ALVDMYAKCGLVKVARNLFEQLRE-- 204 (512)
Q Consensus 132 ~~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~m~~-- 204 (512)
.+..+.+|+..- +.-=...|-+.|+...|..-|.++.....+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 666555554322 2233444555566666666665555543222222121 234445555555666666665543
Q ss_pred C---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCC----------------------C-CCHHHHH----HHHHHHhcC
Q 043142 205 K---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEV----------------------Q-PDHITFV----GVLSACSRG 254 (512)
Q Consensus 205 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------~-p~~~t~~----~ll~a~~~~ 254 (512)
. +...++.++..|....+++.|......+.... . |+...|. .+.-++.+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1 23456666666777777777776666665511 1 2222211 223344455
Q ss_pred CCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
...+....+.....++ .+.| ++..|.-+.++|...|++.+|+.+|..+. .--+...|--+..+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 5555555555555433 5444 67889999999999999999999999882 2234669999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
+.+++++...|++..+-..|...|.+.|+.++|.+++..|..-+-..-+++.|
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999887444333355666
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=1.2e-12 Score=128.15 Aligned_cols=280 Identities=13% Similarity=0.048 Sum_probs=219.8
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhCCChHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGA--ALIDMYAKCSCVVNAR 128 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 128 (512)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+....- .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888765542112 122333345557889999999999999875 45543332 4467889999999999
Q ss_pred HHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 129 QVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNV-------KVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 129 ~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
..++++.+.+|+. .....+...+.+.|+++.+..++..+.+.+..++. .++..++....+..+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999998855 46777888889999999999999999988754332 244455655566667788888888
Q ss_pred hcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-C
Q 043142 201 QLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-S 276 (512)
Q Consensus 201 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 276 (512)
.+++ .++.....+..++...|+.++|..++++..+. .||... .++.+....++.+++.+..+...++ .| |
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCC
Confidence 8764 46778888999999999999999999998873 355532 2344445669999999999999755 55 6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
...+.++...+.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|.+++++.+.+-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 677889999999999999999999988 678999999999999999999999999999998753
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=5e-12 Score=123.78 Aligned_cols=277 Identities=12% Similarity=0.086 Sum_probs=216.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhCCChHHHHHHHHhhhhCCCChhHHH--HHHHHHhccCChHHHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAAL-IDMYAKCSCVVNARQVFDKILERDPSEATLV--TVISASADIAALPQGRE 162 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~--~ll~~~~~~~~~~~a~~ 162 (512)
.|+++.|++......+.. +++.++..+ .....+.|+++.|...|.++.+.+|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998887765542 233444334 4455899999999999999999988875443 33567788999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV-----------VSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 56778899999999999999999999999875432 234444444445555667777777
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG 310 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 310 (512)
.+...-+.+......+..++...|+.++|..+++...+. .|+.... ++......++.+++++.+++. +..|+..
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 775543467788889999999999999999999998743 5555322 233334559999999999887 4456554
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 -VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 -~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
....+...|...+++++|.+.|+++.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888999999999999999999999999876 4678999999999999999999987644
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.8e-13 Score=130.76 Aligned_cols=280 Identities=16% Similarity=0.101 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC----ChhHHHHHHHHHhccCChHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP----SEATLVTVISASADIAALPQGREL 163 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p----d~~t~~~ll~~~~~~~~~~~a~~~ 163 (512)
+..+|...|..+... ..-+..+...+..+|...+++++|.++|+.+....| +...|++.+--+-+. -+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888884443 344557788889999999999999999999998886 445666666433221 11222
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCC
Q 043142 164 HGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPD 240 (512)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 240 (512)
+.+-+-.--+..+.+|-++.+.|+-.++.+.|++.|++..+.| ..+|+.+..-+.....+|.|...|+......+-+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 2221111225567899999999999999999999999988655 5788888888889999999999999987655555
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLN 317 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 317 (512)
-..|..+...|.++++++.|+-.|+.++ .+.| +......+...+-+.|+.|+|+++++++ .+.| |+..----..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 6677788899999999999999999987 6788 6777788888999999999999999998 3333 3333334455
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
.+...+++++|...++++.+.-|++...|..+...|.+.|+.+.|..-|.-+.+.+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6777899999999999999999999999999999999999999999999887765543
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1e-11 Score=122.22 Aligned_cols=296 Identities=12% Similarity=0.028 Sum_probs=191.8
Q ss_pred HHHHHHHHH--HhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 40 LWNVLIRAY--AWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 40 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
....+.++. ...|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.|.+.+....+....+...+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 344455554 3468999999998887664 34433 333445667778999999999988876542222334444577
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH-------Hh
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY-------AK 188 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------~~ 188 (512)
.+...|+++.|...++.+.+..|+. ..+..+...+...|+++.+.+.+..+.+.+..+.......-..++ ..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999998888844 467777888888899999988888888886543332211111111 12
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHH-HH-HHHHHHHhcCCCHHHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHI-TF-VGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~-t~-~~ll~a~~~~g~~~~a~~~ 263 (512)
....+...+.++..++ .+...+..+...+...|+.++|.+++++..+..+++.. .+ ..........++.+.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 2223444445555543 36677777888888888888888888888776552221 11 1111122334667777777
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHh--C-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 264 FESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQ--M-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777664422222214556777777778888888887773 2 4567777777777777777888888777777654
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=7.7e-11 Score=113.50 Aligned_cols=368 Identities=12% Similarity=0.092 Sum_probs=305.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 84 (512)
.+|+.-...|.+.+.++-|+.+|....+ .+...|......--..|..++-..+|++....- +-....|-...+...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3677777888888888888888887654 366788877766667799999999999998753 223445555566677
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELH 164 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 164 (512)
..|++..|+.++.++.+.. +.+..+|-+-+..-....+++.|+.+|.+.....|+...|.--+..---+++.++|.+++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8899999999999998876 557889999999999999999999999999999898888877777777788999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCH
Q 043142 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K-RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH 241 (512)
Q Consensus 165 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 241 (512)
+..++. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.+...=-+.|.+-.|..++++....++-|.
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 888876 455567888888999999999999999987654 3 357788888888888999999999999998888888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 321 (512)
..|...+..=.+.|..++|..+..+..++ .+.+...|..-|.+..+.++-..+.+.+++.. -|....-++...+..
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWS 829 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHH
Confidence 99999999999999999999999998875 34477889999999999999888888888764 455566677777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEE
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIE 384 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 384 (512)
..+++.|.+.|.++++.+|++..+|..+...+...|.-++-.+++++..... |.-|..|..
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~a 890 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHH
Confidence 8999999999999999999999999999999999999999999998876543 445556753
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.2e-11 Score=111.57 Aligned_cols=329 Identities=14% Similarity=0.134 Sum_probs=239.2
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
+-+..++..+|.+.+|....+.|.+++++... -+..+||.+|.+-.-. ...++..+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 44677999999999999999999999998754 3778899998765432 337899999999999999999999
Q ss_pred HHHHhccCChHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH-HHHHHHhhhhC---------CC-ChhHH
Q 043142 80 LKACSALSAIEE----GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN-ARQVFDKILER---------DP-SEATL 144 (512)
Q Consensus 80 l~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~---------~p-d~~t~ 144 (512)
+++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+-++..+ |..+...+... .| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56888999999999999999999999999888754 44444444321 14 44568
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC----CCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCchHHHHH
Q 043142 145 VTVISASADIAALPQGRELHGFSWRHR----FELN---VKVKTALVDMYAKCGLVKVARNLFEQLRE----KRVVSWNAM 213 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~l 213 (512)
...++.|.+..+.+.|.+++..+.... +.|+ .+.|..+....+....++.-...|+.|.. ++..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 899999999999999999998776432 2333 34556677788888889999999998864 344555566
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCC--------------------CHHHHH-HHHHHHHHhc
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGG--------------------LFDEGR-MFFESMVRDY 271 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g--------------------~~~~a~-~~~~~~~~~~ 271 (512)
+.+....|+++-.-+++..+...|. -+...-.-++..+++.. ++.++. .--.++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--- 516 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--- 516 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 7777778888877777777776653 33333333333333322 011111 1111221
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 272 HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 272 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
..+......++..-.+.|.|+.++|.++|.-. +..|......-|+.+..+.++...|..+++-+...+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 23445567788888999999999999988765 233444444466677788888999999998887765
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.7e-11 Score=123.20 Aligned_cols=363 Identities=14% Similarity=0.101 Sum_probs=219.7
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCCCC------chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch--H
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQRN------LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT--F 76 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 76 (512)
.||.+.|.|.+.|--.|+++.+..+...+...+ ..+|--+.++|-..|++++|...|.+.... .||.++ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 456666666666666666666666665544321 234555666666667777776666655543 334333 3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC----ChHHHHHHHHhhhhCCC-ChhHHHHHHHHH
Q 043142 77 PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS----CVVNARQVFDKILERDP-SEATLVTVISAS 151 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~ 151 (512)
.-+...+...|+++.+...|+.+.+.- +.+..+.-.|...|+..+ ..+.|..+..+..+..| |...|..+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334555666666777766666666653 344455555555555553 34556666655555544 334455444444
Q ss_pred hccCChHHHHHHHHHH----HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Cc-------hHHHHH
Q 043142 152 ADIAALPQGRELHGFS----WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK-------RV-------VSWNAM 213 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~-------~~~~~l 213 (512)
-. ++...+...+..+ ...+-.+.+.+.|.+...+...|++++|...|...... |. .-|| +
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-l 502 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-L 502 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-H
Confidence 33 3333334444333 33444566677777777777777777777777665422 11 1222 3
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
...+-..++.+.|.+.|..+....+.=...|..++......+...+|...++..... ...++..++.+...+.+...+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhh
Confidence 334445566777777777776655433344444543333456677777777777642 233455555666677777777
Q ss_pred HHHHHHHHhC----CCCCCHhHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 294 DEACDLIMQM----RVKPDPGVWGALLNSCK------------LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 294 ~~A~~~~~~m----~~~p~~~~~~~ll~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
..|.+-|+.+ ...+|..+.-+|...|. ..+..++|+++|.++++.+|.|.-+-+.+.-+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 7776644433 23466666666666553 2345788999999999999998777778888899999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043142 358 NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 358 ~~~~a~~~~~~m~~~g~ 374 (512)
++.+|..+|..+++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999999988755
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.5e-14 Score=135.21 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
..++.+.|.+.++++.+.+ +.++..+..++.. ...+++++|.+++...
T Consensus 56 ~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~ 103 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKA 103 (280)
T ss_dssp --------------------------------------------------
T ss_pred ccccccccccccccccccc-ccccccccccccc-cccccccccccccccc
Confidence 3344444444444444333 1123333333333 3444444444444433
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=8.3e-13 Score=127.60 Aligned_cols=197 Identities=16% Similarity=0.095 Sum_probs=146.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHH---HHHHHHH
Q 043142 143 TLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA---MITGYAM 219 (512)
Q Consensus 143 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~ 219 (512)
||-.+.+.++-.++.+.|.+.|.++++.. +-...+|+.+..-+.....+|+|...|+.....|...||+ +...|.+
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 44444444444444444444444444322 1245666767777777778888888888887777655544 6778899
Q ss_pred cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHH
Q 043142 220 HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 298 (512)
+++.+.|+-.|++..+-++.+.+....+...+.+.|+.|+|+++++++. .++| |+..---.+..+...+++++|+.
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 9999999999999888877788888888888899999999999999887 4566 55555556667888899999999
Q ss_pred HHHhCC-CCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 299 LIMQMR-VKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 299 ~~~~m~-~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+++.+ +.|+.. .+..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 579 ~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 579 ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 999883 556554 778888899999999999999999999998744
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-11 Score=114.93 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=172.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHH
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
.|+.-.+.+-++..++....+ ...|--+..+|....+.++..+.|+...+- +..+|.--...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 567777888888887765332 333677778899999999999999887653 4567777777777788999999999
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD- 308 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 308 (512)
++.+...+.+...|.-+..+..+.+.++++...|+..+++ ++--+.+|+.....+...+++++|.+.|+.. .++|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 9998887788888888888888999999999999999765 4446789999999999999999999999876 34443
Q ss_pred --------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 309 --------PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 309 --------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+.+-.+++..-. .+++..|.++++++++++|....+|..|...-...|+.++|+++|++-.
T Consensus 496 ~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222233332223 3899999999999999999999999999999999999999999998754
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=8.3e-12 Score=125.32 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=199.3
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-----CCChh-----H-HHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-----DPSEA-----T-LVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~pd~~-----t-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
.+-++.+.+.|.+...+...|+++.|...|+..... ++|.. | --.+....-..++.+.|.+.|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344466677788888888888888888888877654 23331 2 223344445677888888888888875
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHH
Q 043142 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFV 245 (512)
Q Consensus 171 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~ 245 (512)
. +.-+..|--|..+.-..+...+|...+..... .++..|..+...|.....+..|..-|....+.-. +|+.+..
T Consensus 526 h-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 526 H-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred C-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 3 22233333333333344677788888887654 4577888888888888888888887777755433 7888887
Q ss_pred HHHHHHhc------------CCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHh
Q 043142 246 GVLSACSR------------GGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPG 310 (512)
Q Consensus 246 ~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~ 310 (512)
+|...|.. .+..+.|+++|.++++ ..| |...-+.+.-.++..|++.+|.++|.+.. ..-...
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 88776543 2457788899998874 466 88888899999999999999999999883 223456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+|-.+...|...|++..|+++|+..++.. .+++.....|..++.+.|++.+|.+.........+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999998743 44677888999999999999999999887766543
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.8e-11 Score=110.21 Aligned_cols=358 Identities=13% Similarity=0.148 Sum_probs=266.6
Q ss_pred ccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 95 (512)
.++++..|+.+|++... ++...|-.-+..=.++..+..|..++++.+..=...|.. |--.+-.--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 45778889999988654 678888888888889999999999999987743333333 22333344567889999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHc-C-CC
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRH-R-FE 173 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~ 173 (512)
|+.-.+- .|+...|++.|+.-.+...++.|..++++..-..|+..+|.-...---+.|....++.+|..+++. | -.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9887754 789999999999999999999999999998888888888888887778888888888888877763 2 11
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhc----CC----------------------------------------CC---
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQL----RE----------------------------------------KR--- 206 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m----~~----------------------------------------~~--- 206 (512)
.+...+++....=.++..++.|.-+|.-. ++ .|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22334455555445566666666665432 11 11
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCH-------HHHHHHHHHH---hcCCCHHHHHHHHHHHHHhcCCCC-
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH-------ITFVGVLSAC---SRGGLFDEGRMFFESMVRDYHIDP- 275 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p- 275 (512)
-.+|--.+..-...|+.+...++|++....-+|-. ..|.-+=.+| ....+++.+.++|+..++ +-|
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCc
Confidence 12566667666777899999999999887765522 1222222222 346788999999998873 456
Q ss_pred ChhHHHHHHHHH----hccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLL----GHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
...++.-+--+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|.+..+|...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 555666555444 4778999999999766 88899999999999989999999999999999999999999999999
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 351 NIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
..-...|+++.|..+|+........-.|..-|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999988776544444444
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.4e-11 Score=121.33 Aligned_cols=281 Identities=13% Similarity=0.065 Sum_probs=206.9
Q ss_pred ccCChHHHHHHHccCCC--CCc-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCChHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQ--RNL-FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF--TFPFALKACSALSAIEEGR 93 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 93 (512)
..|+++.|++.+.+..+ |+. ..+-....++.+.|+++.|.+.|.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46999999999988654 332 23334456677889999999999998764 35543 3333467788899999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHH-HHHH---hccCChHHHHHHHHHHH
Q 043142 94 RIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTV-ISAS---ADIAALPQGRELHGFSW 168 (512)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~l-l~~~---~~~~~~~~a~~~~~~~~ 168 (512)
+.++.+.+.. |.+..+...+...|.+.|++++|.+.+..+.+.++ +...+..+ ..+. ...+..+.+...+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999986 56778899999999999999999999999998743 33333211 1111 22222333334555555
Q ss_pred HcCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchH---HHHHHHHHHHcCChHHHHHHHHHhHHCCCCC
Q 043142 169 RHRF---ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--RVVS---WNAMITGYAMHGHSTKALDLFEKMKDEVQPD 240 (512)
Q Consensus 169 ~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 240 (512)
+... +.+...+..+...+...|+.++|.+++++..+. |... +..........++.+.+++.+++..+..+-|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 4432 247889999999999999999999999998753 3221 1222223344577889999998888776644
Q ss_pred H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 241 H--ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 241 ~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
. ....++...+.+.|++++|.++|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 667788999999999999999999532 2255899988999999999999999999999874
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.4e-10 Score=115.87 Aligned_cols=351 Identities=14% Similarity=0.119 Sum_probs=262.3
Q ss_pred cCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHH
Q 043142 20 CDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIH 96 (512)
Q Consensus 20 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 96 (512)
.|++++|.+++.++.+ ++...|.+|...|-+.|+.++++..+--.-... +-|..-|..+.....+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4999999999999754 477899999999999999999988876554432 234567888888889999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC------hhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 97 EDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS------EATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
.++++.. +++....---...|-+.|+...|..-|.++....|. ..+.-.++..+...++.+.|.+.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999987 566666666788899999999999999999998872 223334566677777778888888877763
Q ss_pred -CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCc----------------------hHHHH----HHHHHHH
Q 043142 171 -RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----KRV----------------------VSWNA----MITGYAM 219 (512)
Q Consensus 171 -g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----------------------~~~~~----li~~~~~ 219 (512)
+-..+...++.++.+|.+...++.|......+.. +|. .+|+. +.-++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2244556788899999999999999887766543 111 11211 2223334
Q ss_pred cCChHHHHHHHHHhHHCC--C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 043142 220 HGHSTKALDLFEKMKDEV--Q-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~--~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 296 (512)
.+..+....+.....+.. + -+...|.-+..++...|.+.+|..+|..+... ...-+..+|--+..+|...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHH
Confidence 444444444444444444 4 56677889999999999999999999999743 2222577999999999999999999
Q ss_pred HHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCCchHHHHHHHHHhccChhHHHHH
Q 043142 297 CDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELE---------PHDAGNYVILSNIYARAANWEGVAKL 365 (512)
Q Consensus 297 ~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (512)
.+.++.. ...|+.. .--+|-..+-+.|+.++|.+.++.+..-+ +++..........+...|+.++=..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999888 4556543 55667777889999999999999876333 22334555677888999999987777
Q ss_pred HHHHHhCC
Q 043142 366 RKLMIDRG 373 (512)
Q Consensus 366 ~~~m~~~g 373 (512)
-..|....
T Consensus 549 ~~~Lv~~~ 556 (895)
T KOG2076|consen 549 ASTLVDDF 556 (895)
T ss_pred HHHHHHHH
Confidence 77776543
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3e-11 Score=114.68 Aligned_cols=263 Identities=15% Similarity=0.071 Sum_probs=216.0
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 104 WETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
...++.+.....+-+...+++.+..++++...+.+| ....+..-|..+...|+..+-..+=..+++. .|....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345666677777788889999999999999999886 4445555566778888877777666666665 46677899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
.--|.-.|+..+|++.|.+...-| ...|-.+..+|+-.|..++|+..+...-+.-+-....+.-+..-|.+.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999999877655 47999999999999999999999988766544222223335557888999999
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-----CCC----CHhHHHHHHHHHHHcCCHHHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-----VKP----DPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p----~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
|.++|.+.. ++-| |+...+-+.-.....+.+.+|..+|+..- ..+ -..+++.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 7778 77788888777888899999999998761 111 2336888999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+++.+.+.|.++.+|..+.-.|...|+++.|.+.|.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.5e-10 Score=105.01 Aligned_cols=322 Identities=13% Similarity=0.116 Sum_probs=225.9
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVF--VGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l 114 (512)
|...+-...-.+.+.|....|...|...... . +..|.+.+..+.-..+.+ +...+.. |.+.|.. .---+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~lit~~e----~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELITDIE----ILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhhchHH----HHHHHHh-cCcccchHHHHHHH
Confidence 4333334444455667777788777776543 1 233443333322222222 2222222 2232211 11123
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHH-hccCChHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcC
Q 043142 115 IDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISAS-ADIAALPQGRELHGFSWRHRF--ELNVKVKTALVDMYAKCG 190 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g 190 (512)
..+|-...+.++++.-.......+ |+..-+.+.+.++ ....+++.|..+|+.+.++.. -.|..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 455666667777777777766664 4444444444443 567788888888888888742 124556666553332222
Q ss_pred CHH-HHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 191 LVK-VARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 191 ~~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
++. .|..++ .+.+--+.|...+.+-|.-.++.++|...|++..+.++.....|+.+..-|....+...|.+-++..+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 222 233332 22233355666677788888999999999999999888777889999999999999999999999998
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 270 DYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 270 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
.+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.++...+-.+...+
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5677 8899999999999999999999999998 4566 556999999999999999999999999999987788899
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHh
Q 043142 347 VILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
..|...|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987665
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=7.6e-10 Score=106.82 Aligned_cols=365 Identities=15% Similarity=0.106 Sum_probs=290.1
Q ss_pred HHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHH----HHHCCCCCCcchHHHHHHHHhc
Q 043142 13 LVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYR----LLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
|.-+|++...++.|.+++.+.. +.+...|-+-...=-.+|+.+...++..+ +...|+..+...|..=..+|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3345566677788888877654 34777887666666778888888877665 3456888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWET--DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~ 162 (512)
.|..-.+..|...++..|+.. --.+|+.-...+.+.+.++-|+.+|....+..|.. ..|......--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888888777643 24578888889999999999999999999888744 567777777677889999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
+++.++..- +-....|-....-+-..|++..|+.++...-+. +...|.+-+..-..+.+++.|..+|.+..... |
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-g 649 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-G 649 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-C
Confidence 999988874 445556666677778899999999999887653 35679888999999999999999999887532 6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLN 317 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~ 317 (512)
+...|..-+..-...+..++|.++++..++.+ +--...|..+...+-+.++++.|.+.+..- +.-|+.. .|-.|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 77777766666677899999999999998653 223567888889999999999998887655 4556654 8888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeE
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWI 383 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 383 (512)
.--+.|++-+|..++++..-.+|.+...|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 88888999999999999999999999999999999999999999998887665432 44555664
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.8e-10 Score=102.19 Aligned_cols=264 Identities=13% Similarity=0.141 Sum_probs=148.3
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhCCChHH
Q 043142 50 WNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK-WETD--VFVGAALIDMYAKCSCVVN 126 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~ 126 (512)
-.++.++|.++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|+.+|+.+.++. ++.+ ......|..-|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998742 1123355667788899999999999999888752 1111 2344567778888999999
Q ss_pred HHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 127 ARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHGFSWRHRFELN----VKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 127 A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
|..+|..+.+.+ --....-.|+..|-...++++|..+-..+.+.+-.+. ...|.-|...+....+++.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999998886632 2334555666666666666666666666665543322 12333344444445555555555555
Q ss_pred cCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh
Q 043142 202 LREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277 (512)
Q Consensus 202 m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 277 (512)
..+.| +..--.+...+...|+++.|.+.++...+.++ --..+...|..+|.+.|+.+++...+..+.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 44332 22222233445555555555555555555544 44444555555555555555555555555432 2333
Q ss_pred hHHHHHHHHHhccCChHHHHHHH-HhCCCCCCHhHHHHHHH
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLI-MQMRVKPDPGVWGALLN 317 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~ 317 (512)
..-..+.+......-.+.|...+ ++..-+|+...+..|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 33333333333333333333332 22333455444444443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=9.3e-10 Score=100.66 Aligned_cols=279 Identities=14% Similarity=0.096 Sum_probs=146.1
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV 130 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 130 (512)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-+++.++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776665554333 1234444555666677777777776666653345556666666666667777777766
Q ss_pred HHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 131 FDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNV-------KVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 131 ~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
.+++.+..|. .........+|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666666553 334455556666666666666666666666544332 23344444333333333333344444
Q ss_pred CC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChh
Q 043142 203 RE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQ 278 (512)
Q Consensus 203 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 278 (512)
++ .++..-.+++.-+.+.|+.++|.++..+..+..- |. ....-.+.+.++.+.-++..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 32 2333344444455555555555555555544443 33 1112233444444444444444444333333 3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
.+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+.+..++.+.|+.++|.+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555555555543 444555555555555555555555555555544
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=5.3e-11 Score=107.95 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA 250 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a 250 (512)
.....+..+...|.+.|++++|...|++..+. +...+..+...|...|++++|.+.+++..+..+.+...+..+...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567778889999999999999999887542 356788888899999999999999999988777666778888889
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A 328 (512)
+...|++++|...++...+..........+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999753222224567777888999999999999999887 33443 55788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999998887653
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.8e-10 Score=100.15 Aligned_cols=290 Identities=10% Similarity=0.091 Sum_probs=223.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh------hHHHHHHHHHhccCChHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE------ATLVTVISASADIAALPQ 159 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~------~t~~~ll~~~~~~~~~~~ 159 (512)
.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|.|+++.+.+.++ ||. .....|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 468899999999999854 445667778999999999999999999988776 332 344556667788999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHcCChHHHHHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV--------VSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
|+.+|..+.+.+ ..-.....-|+..|-...+|++|.++-+++.+.+. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998755 22344666789999999999999999887664332 356667777777889999999999
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG 310 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 310 (512)
+..+..+.....=..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+...
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 998877755555556778889999999999999999755 33334677888999999999999999999877 4455555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhccChhHHHHHHHHHHhCCCccCCce
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY---ARAANWEGVAKLRKLMIDRGIKKSIAC 380 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~ 380 (512)
.-..+-..-....-.+.|...+.+-+...|.-. .+.-|+..- +.-|++.+....++.|....++..|.+
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 556666666666667888888888888888543 444555543 344668888999999988777766643
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2e-09 Score=98.50 Aligned_cols=276 Identities=14% Similarity=0.122 Sum_probs=212.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC--CCChhHHHHHHHHHhccCChHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER--DPSEATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~pd~~t~~~ll~~~~~~~~~~~a~~ 162 (512)
..|++.+|++....-.+.+- .....|..-..+.-..|+.+.|-..+.+..+. +++.....+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 35899999999998777763 33445555667788899999999999999888 4555566677777888999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV-----------VSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
-...+.+.+ +-++.+......+|.+.|++.....++..+.+.++ .+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999888876 45677888899999999999999999999987543 467777776665555555555666
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH----hCCCCC
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM----QMRVKP 307 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~p 307 (512)
.....-..++..-.+++.-+.+.|+.++|.++..+..++ +.+|+. ..++ ...+.++...-++..+ ..+..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 665443355666677888889999999999999988765 566652 1122 2344555554444443 334334
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+.+|..-|.+++.+.+|...|+.+++..|.. ..|..+..++.+.|+..+|.+++++-.
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 688999999999999999999999999988854 699999999999999999999998865
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=1.6e-12 Score=85.80 Aligned_cols=50 Identities=24% Similarity=0.557 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.5e-08 Score=93.06 Aligned_cols=347 Identities=13% Similarity=0.117 Sum_probs=166.5
Q ss_pred cCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 043142 20 CDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHE 97 (512)
Q Consensus 20 ~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 97 (512)
.|++..|+++|++-. +|+..+|++.|..=.+.+.++.|..+|++..- +.|+..+|.-..+---+.|....+.++|+
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345555555554421 35555566665555555555566666555544 34555555555555555555555555555
Q ss_pred HHHHh-CC-CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh---HHHHHHHHHhccCChHHHHHH--------H
Q 043142 98 DVIRN-KW-ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA---TLVTVISASADIAALPQGREL--------H 164 (512)
Q Consensus 98 ~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~---t~~~ll~~~~~~~~~~~a~~~--------~ 164 (512)
..++. |- ..+..++.+....-.++..++.|.-+|.-....-|... .|.....---+.|+....... |
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 55443 10 01122333333333344445555555444333222221 111111111122222111111 1
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--c---hHHHHHH--------HHHHHcCChHHHHHHHH
Q 043142 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR--V---VSWNAMI--------TGYAMHGHSTKALDLFE 231 (512)
Q Consensus 165 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~---~~~~~li--------~~~~~~g~~~~A~~~~~ 231 (512)
+.+++.+ +.|-.+|--.+..-...|+.+...++|++....- . ..|.-.| -.=....+.+.+.++|+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222221 3344455555555556666666666666654211 0 1121111 11123455666666666
Q ss_pred HhHHCCCCCHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 043142 232 KMKDEVQPDHITFVGVLSAC----SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK 306 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 306 (512)
...+.-+-...||..+=-.| .++.++..|.+++...+ |.-|-..++-..|+.=.+.+.+|....++++. ...
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 66553223344444432222 24556666666666655 55666666666666666666666666666655 333
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD--AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|. -.+|.-...--...|+.+.|..+|+-+++....+ ...|-..|+.-...|.++.|..+++++.++
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 43 3356555555556666666666666665543111 123444444455666666666666666554
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=4e-10 Score=115.28 Aligned_cols=243 Identities=11% Similarity=-0.002 Sum_probs=178.8
Q ss_pred CChHHHHHHHHhhhhCCCChh-HHHHHHHHHh---------ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 122 SCVVNARQVFDKILERDPSEA-TLVTVISASA---------DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
+++++|...|++..+.+|+.. .+..+..++. ..+++++|...++++++.. +.+...+..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 346789999999999998764 3444433332 2345788999999988875 4567788888889999999
Q ss_pred HHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|...|++..+.+ ...|..+...+...|++++|+..+++..+..+.+...+..++..+...|++++|...++++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999976533 46788888999999999999999999988877333333344445666899999999999886
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELE---PHD 342 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~ 342 (512)
+. ..| +...+..+..+|...|+.++|...++++ +..|+.. .++.+...+...| +.|...++++.+.. |.+
T Consensus 434 ~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred Hh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 43 135 4556777888899999999999999887 3445544 4555556667776 47888788777643 444
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+. .+...|.-.|+-+.+... +++.+.|
T Consensus 510 ~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33 256667777887777766 7777654
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=7e-10 Score=108.53 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=134.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHHHcCChHHHHHHHHHhHH-----CCC--CCHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE-------KR----VVSWNAMITGYAMHGHSTKALDLFEKMKD-----EVQ--PDHI 242 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~--p~~~ 242 (512)
.+..+|...+++.+|..+|+++.. ++ ..+++.|..+|.+.|++++|...+++..+ .+. |...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 455566666666666666665531 11 24566666667777776666666555422 122 3333
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCC
Q 043142 243 -TFVGVLSACSRGGLFDEGRMFFESMVRDYH--IDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM---------RVK 306 (512)
Q Consensus 243 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~ 306 (512)
-++.+...|+..+++++|..+++...+.+. +.++ ..+++.|...|...|++.+|+++++++ +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 355666778888999999988887765543 2222 467899999999999999999999877 112
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIEL----EPH---DAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+. ....+.|...|.+.+++++|.++|.+.... +|. ...+|..|+.+|...|++++|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 336788889999999999999999887653 444 44578899999999999999999998876
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=1.8e-08 Score=99.61 Aligned_cols=368 Identities=18% Similarity=0.166 Sum_probs=258.6
Q ss_pred CCCchhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHH
Q 043142 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT-FPF 78 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 78 (512)
++.|+.+|-.|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.+.+.-......|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 457899999999999999999999999998654 3456899999999999999999999988755433354433 333
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhC-----------CChHHHHHHHHhhhhCCCC-h
Q 043142 79 ALKACS-ALSAIEEGRRIHEDVIRN--KW--ETDVFVGAALIDMYAKC-----------SCVVNARQVFDKILERDPS-E 141 (512)
Q Consensus 79 ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~pd-~ 141 (512)
.-..|. +.+.++++..+-.+++.. +. ...+..|-.+.-+|... ....++.+.+++..+.+|+ .
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334444 457777887777777662 11 12344455555555432 1245678888888777753 3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-------------
Q 043142 142 ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--R------------- 206 (512)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~------------- 206 (512)
.....+.--++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+. +
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333344456778899999999999999877888999999999999999999999988764321 0
Q ss_pred --------chHHHHHHHHHH------Hc-----------------CChHHHHHHHHHhHH--------CC----------
Q 043142 207 --------VVSWNAMITGYA------MH-----------------GHSTKALDLFEKMKD--------EV---------- 237 (512)
Q Consensus 207 --------~~~~~~li~~~~------~~-----------------g~~~~A~~~~~~m~~--------~~---------- 237 (512)
+.+...++...- +. .+..+|....+++.. .+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 011111111111 00 112222222222100 00
Q ss_pred -C-CCH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 238 -Q-PDH------ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 238 -~-p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
+ |+. ..+......+.+.+..++|...+.+.. ++.| ....|......+...|.+++|.+.|... -+.|
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 1 121 123344556777788888887777664 4555 6677777778889999999999888766 5677
Q ss_pred CHh-HHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 308 DPG-VWGALLNSCKLHGHVKLAEL--ALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 308 ~~~-~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+.+ +..++...+...|+...|.. ++..+++.+|.++..|..|..++-+.|+.++|.+.|+...+..
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 665 88899999999999988888 9999999999999999999999999999999999999877643
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=9.4e-10 Score=99.67 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
....+..+...|.+.|++++|...|++..+.+|+. ..+..+...+...|++++|.+.+....+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34566677777888888888888888777666543 344555555566666666666666665543 2233445555555
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHH
Q 043142 186 YAKCGLVKVARNLFEQLREK-----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a 260 (512)
|...|++++|.+.|++..+. ....+..+...+...|++++|...|.+.....+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 56666666666665554321 1223344444455555555555555554443333333444444444555555555
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 261 RMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
..++++..+. ...+...+..+...+...|+.++|..+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555544322 11123333334444444444444444433
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1.1e-09 Score=112.05 Aligned_cols=256 Identities=11% Similarity=0.020 Sum_probs=180.4
Q ss_pred chHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hCCChHHHHHHHHhhhhCCC
Q 043142 74 FTFPFALKACSA-----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYA---------KCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 74 ~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~p 139 (512)
..|...+.+-.. .+++++|.+.+++.++.. +.+...|..+..+|. ..+++++|...+++..+.+|
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 445555555321 234678888999888774 334556666655544 23457899999999999988
Q ss_pred Ch-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHH
Q 043142 140 SE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV---VSWNAMIT 215 (512)
Q Consensus 140 d~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~ 215 (512)
+. .++..+...+...|++++|...++++++.+ +.+...+..+...|...|++++|...|++..+.++ ..+..++.
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 54 566677777888999999999999998876 44567788889999999999999999999865432 23344455
Q ss_pred HHHHcCChHHHHHHHHHhHHCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCh
Q 043142 216 GYAMHGHSTKALDLFEKMKDEVQP-DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 293 (512)
.+...|++++|+..+++......| +...+..+..++...|+.++|...+..+... .| +....+.+...|.+.|
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--
Confidence 567789999999999998776554 4445667778888999999999999887533 44 3445566666777777
Q ss_pred HHHHHHHHhC----CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 294 DEACDLIMQM----RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 294 ~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
++|...++.+ ...|....+ +-..+.-+|+.+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777666655 233433444 33445567777777666 7776654
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=1.7e-10 Score=114.75 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=148.1
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 043142 139 PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYA 218 (512)
Q Consensus 139 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 218 (512)
|+.+||..++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. ++...+|..+..+|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYR 94 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHH
Confidence 33333444444444444443333 4444444445556666667776666666666554 556667777777777
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 298 (512)
++|+... ++..++ -...+...++..|--..-..++..+.-..+.-||.. ..+....-.|.++.+++
T Consensus 95 ~hGDli~-fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 95 IHGDLIL-FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hccchHH-HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHH
Confidence 7777544 222222 122344455555555555555554432223344433 34445566677788888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccC
Q 043142 299 LIMQMRVKPDPGVWGALLNSCKLHG-HVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKS 377 (512)
Q Consensus 299 ~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 377 (512)
++..+|...-......+++-+.... .+++-....+...+ -+++.+|..+...-..+|+.+-|..++.+|+++|+...
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 8877753221112222344444333 33444444444444 34678999999999999999999999999999999999
Q ss_pred CceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCc
Q 043142 378 IACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMKEAGYVPGTES 427 (512)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~ 427 (512)
+.+.|..+ .|... ...++.+.+.|++.|+.|+..+
T Consensus 239 ~HyFwpLl--------~g~~~-------~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 239 AHYFWPLL--------LGINA-------AQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred cccchhhh--------hcCcc-------chHHHHHHHHHHHhcCCCCcch
Confidence 99999643 33211 1234678899999999999854
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.2e-08 Score=95.71 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=167.6
Q ss_pred CCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 043142 121 CSCVVNARQVFDKILERDPSEAT-LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 199 (512)
+|+.-.|..-|+...+.+|.... |.-+..+|.+..+.++..+.|..+.+.+ +-++.+|.--..++.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555 7778888999999999999999999876 445667777778888889999999999
Q ss_pred HhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043142 200 EQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS 276 (512)
Q Consensus 200 ~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 276 (512)
++..+-+ +..|-.+.-+.-+.+++++++..|++.+..-+.-+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPR 494 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccc
Confidence 9987654 456666666777888999999999999988776667788888999999999999999999873 3554
Q ss_pred ---------hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 277 ---------VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 277 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+.+.-+++..- -.+++..|.+++++. .+.|.- ..|.+|...-.+.|+.++|+++|++...+-
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11222222222 348999999999888 555644 489999999999999999999999988764
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.7e-07 Score=86.26 Aligned_cols=362 Identities=12% Similarity=0.057 Sum_probs=238.7
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCCC-CchHHHHHHHHHHhcCC--chHH-------------HHHHHHHHHCC--
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQR-NLFLWNVLIRAYAWNGP--YEVA-------------IELYYRLLEIG-- 68 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~--~~~A-------------~~~~~~m~~~g-- 68 (512)
...--..+..|...++-+.|.....+.+++ ...--|.|+.-+-+.|. .++. +....-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 334445677788888999999999888764 33344444444333331 2211 11111111211
Q ss_pred -------------CCCCcchHHHHHHHHhc--cCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 69 -------------LVPDNFTFPFALKACSA--LSAIEEGRRIHEDVIRN-KWETDVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 69 -------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+.|+..+....+.+++. .++-..+.+.+-.+... -++.|+....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 22333334444444433 34444455555444433 357788899999999999999999999999
Q ss_pred hhhhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---ch
Q 043142 133 KILERDPSEAT-LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VV 208 (512)
Q Consensus 133 ~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~ 208 (512)
+....+|+..+ .....-.+.+.|+++....+...+.... +.+...|-.-........+++.|..+-++..+.+ +.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 99999887654 2222223356677777777766665432 1122222222333445677888888887766544 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMV-DLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~ 287 (512)
.|-.-...+.+.+++++|.-.|+..+...+-+...|..|+.+|...|.+.+|...-+...+.. ..+..+.+.+. ..+
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceee
Confidence 554445678889999999999999887777788899999999999999999988777765432 23444444431 222
Q ss_pred h-ccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 288 G-HSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 288 ~-~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
. ....-++|.+++++. .++|+.. ..+.+..-|...|..+.++.++++.+...|++ .....|.+.+.....+.+|.+
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHH
Confidence 2 223357788888776 6778765 66777778888999999999999999888865 588889999999999999999
Q ss_pred HHHHHHhC
Q 043142 365 LRKLMIDR 372 (512)
Q Consensus 365 ~~~~m~~~ 372 (512)
.|......
T Consensus 493 ~y~~ALr~ 500 (564)
T KOG1174|consen 493 YYYKALRQ 500 (564)
T ss_pred HHHHHHhc
Confidence 88876543
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.9e-09 Score=99.72 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=98.9
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 297 (512)
..|+.++|++.|-++..--..+...+.-+.+.|....+..+|++++.+.. .+.| |+...+.|.+.|-+.|+-.+|.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 34444455444444432211344444555555666666666666666553 4455 7788888888888888888887
Q ss_pred HHHHh-CCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HHHhccChhHHHHHHHHHHhC
Q 043142 298 DLIMQ-MRVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN-IYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 298 ~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+..-. .+.-| +..+..-|...|....-+++|+..|+++.-..|.. .-|..++. .+.+.|++..|.++++....+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76533 34333 45566667777777777889999999988777755 45655554 456889999999999988654
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.5e-11 Score=80.10 Aligned_cols=49 Identities=33% Similarity=0.582 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhc
Q 043142 205 KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSR 253 (512)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~ 253 (512)
||+++||++|.+|++.|++++|.++|++|.+.|+ ||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 5667777777777777777777777777777777 777777777777764
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.3e-09 Score=96.91 Aligned_cols=229 Identities=14% Similarity=0.133 Sum_probs=140.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
+-+.++|.+.|-+.+|.+.|+...+..|-+.||..+-.+|.+...++.|..++.+-++. ++.++.........+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 45666666666666666666666666565566666666666666666666665555543 23333333444444555555
Q ss_pred HHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.++|.++|+...+. ++.+..++..+|.-.++++-|+..|+++.+.|..+...|+.+.-+|.-.+++|-++.-|++..
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 55555555544332 233333444445555555555555555555555444555555555554444444444444332
Q ss_pred HhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 269 RDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD--PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
.. -.+|+ ..+|-.|.......||+..|.+.|+-.+..+|++..++
T Consensus 386 st---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 386 ST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred hh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 11 11232 23666677777788999999999999999999999999
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 347 VILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+.|.-.-.+.|++++|..+++.......
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999998876543
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=4e-08 Score=97.51 Aligned_cols=283 Identities=15% Similarity=0.143 Sum_probs=186.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC---
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC--- 121 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 121 (512)
..+...|++++|++.++.-.. ..+|.. .+......+.+.|+.++|..++..+++.+ |.|..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 345667777788777766433 233443 34445566777788888888888777775 34455555555554222
Q ss_pred --CChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 043142 122 --SCVVNARQVFDKILERDPSEATLVTVISASADIAAL-PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198 (512)
Q Consensus 122 --g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 198 (512)
.+.+....+++++.+..|.......+.-.+..-..+ ..+......+++.|+|+ +++.|-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 246667778888777776655544333333221222 33556666777778654 677777777766555555555
Q ss_pred HHhcC----C--------------CCch--HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 199 FEQLR----E--------------KRVV--SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 199 ~~~m~----~--------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
+.... . |... ++..+...|...|+.++|++.+++..+..+.....|..-...+-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 54432 0 1112 33555677888999999999999988876655677888888999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC---CCCCH------hHH--HHHHHHHHHcCCHH
Q 043142 259 EGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKPDP------GVW--GALLNSCKLHGHVK 326 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~------~~~--~~ll~~~~~~g~~~ 326 (512)
+|...++... .+++ |-..-+-.+..+.|+|++++|.+++.... ..|-. ..| .....+|.+.|++.
T Consensus 246 ~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 246 EAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999885 4455 66666777888899999999999887773 11111 123 33456788999999
Q ss_pred HHHHHHHHHHh
Q 043142 327 LAELALEKLIE 337 (512)
Q Consensus 327 ~A~~~~~~~~~ 337 (512)
.|++-|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99888877765
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=4.3e-09 Score=98.73 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHHcC-CCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHH
Q 043142 155 AALPQGRELHGFSWRHR-FEL--NVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALD 228 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 228 (512)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+. +...|+.+...|...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666532 222 2456777888889999999999999887643 46789999999999999999999
Q ss_pred HHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCC
Q 043142 229 LFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM--RVK 306 (512)
Q Consensus 229 ~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 306 (512)
.|++..+..+.+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|++. ...
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999998876666778888888888999999999999988743 564332222223345667899999998654 223
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 307 PDPGVWGALLNSCKLHGHVKLAELALEKLI-------ELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
|+...| .......|+...+ +.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.++
T Consensus 197 ~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 332222 2222334555443 2444444 34455667899999999999999999999998887654
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2e-08 Score=95.82 Aligned_cols=278 Identities=15% Similarity=0.093 Sum_probs=210.1
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
.|+...-.-..-+-..+++.+.+++++...+. .++....+..-|.++...|+..+-..+=.++++.- |..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 46666666677778888999999999888765 34455556666667777787776666666666653 66778888888
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHc--C-CCCchHHHHHHHHHHHhcCC
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRH--R-FELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g-~~~~~~~~~~li~~y~~~g~ 191 (512)
--|.-.|+..+|++.|.+....+|.- ..|.....+++..+..+.|...+..+-+. | ..|. .| +.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHHhcc
Confidence 88888899999999999988887754 57888888899899999988888777653 2 2222 22 2344777889
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHC----CC--C-CHHHHHHHHHHHhcCCCHHHHH
Q 043142 192 VKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE----VQ--P-DHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 192 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--p-~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
++.|.+.|.+.. ..|+...+-+.-.....+.+.+|..+|+..... .. + ...+++.|..+|.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998764 345677777776667778888998888877522 11 1 4456888999999999999999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHc
Q 043142 262 MFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 262 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 322 (512)
..|++.+. ..| +..++.++.-.|...|+++.|.+.|.+. .++|+..+-..++..+...
T Consensus 476 ~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99998874 345 8888999999999999999999999776 6788888777777766543
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=6.3e-09 Score=88.40 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 287 (512)
+...+.-+|.+.|+...|..-+++..+..+.+..++..+...|.+.|..+.|.+-|+..+ .+.| +..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 344566788899999999999999988888788888889999999999999999999887 4577 677888888889
Q ss_pred hccCChHHHHHHHHhCCCCC---C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKP---D-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p---~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
+..|++++|...|++.-..| . ..+|..+.-+..+.|+.+.|+..|++.++.+|+.+.+...+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998872222 2 3488888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 043142 364 KLRKLMIDRGI 374 (512)
Q Consensus 364 ~~~~~m~~~g~ 374 (512)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999887665
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=2.5e-08 Score=93.58 Aligned_cols=213 Identities=14% Similarity=0.011 Sum_probs=132.4
Q ss_pred CCchHHHHHHHHHHHCC-CCCCc--chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 52 GPYEVAIELYYRLLEIG-LVPDN--FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 52 g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
+..+.++.-+.+++... ..|+. ..|..+...+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 22222 345566666777788888888888777765 456677788888888888888888
Q ss_pred HHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC
Q 043142 129 QVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-KR 206 (512)
Q Consensus 129 ~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~ 206 (512)
..|++..+.+|+. .++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+... .+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 8888887777753 456667777777788888888888777654 2222122222233456778888888855432 22
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCC-------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEV-------QPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
...|.. ...+...|+..++ +.+..+.+.. +....+|..+...+.+.|++++|...|+...+
T Consensus 197 ~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233331 2223335555443 3444443221 12335677788888888888888888888864
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=2.7e-08 Score=97.59 Aligned_cols=231 Identities=15% Similarity=0.128 Sum_probs=169.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhC--------CCChhHH-HHHHHHHhccCChHHHHHHHHHHHHc-----C-
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILER--------DPSEATL-VTVISASADIAALPQGRELHGFSWRH-----R- 171 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----g- 171 (512)
-..+...|..+|...|+++.|..+|....+. .|...+. ..+...|...+++++|..+|..++.. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555777788888888888877776554 3444433 33666677778888888888777652 2
Q ss_pred -CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCc-hHHHHHHHHHHHcCChHHHHHHHHHhHHC---
Q 043142 172 -FELNVKVKTALVDMYAKCGLVKVARNLFEQLRE----------KRV-VSWNAMITGYAMHGHSTKALDLFEKMKDE--- 236 (512)
Q Consensus 172 -~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 236 (512)
.+.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..++++..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122245677778889999999888887776431 122 34666777888999999999998876432
Q ss_pred CC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC--
Q 043142 237 VQ-PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDY-----HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-- 303 (512)
Q Consensus 237 ~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 303 (512)
-+ ++ ..+++.|...+...|++++|..+|++++... +..+ ....++-|...|.+.++..+|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12 22 3678999999999999999999999987653 1123 3567788899999999999998888765
Q ss_pred ------CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 304 ------RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 304 ------~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+..|++. +|..|...|...|+++.|+++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2445654 899999999999999999999998874
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-07 Score=87.26 Aligned_cols=292 Identities=10% Similarity=0.018 Sum_probs=213.4
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChH
Q 043142 48 YAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFV-GAALIDMYAKCSCVV 125 (512)
Q Consensus 48 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~ 125 (512)
.+..++...|...+-.+.....-| |......+...+...|+..+|...|++..-.. |+... -....-.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHh
Confidence 344566666666665554443444 45567888899999999999999999886543 33221 111222345778888
Q ss_pred HHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 126 NARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 126 ~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
...++-..+...+ -....|..-+......++++.|..+-++.++.. +-++..+-.-...+...|+.++|.-.|+....
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8888777776543 233334444445566788888888888877754 23344444445667788999999999988653
Q ss_pred ---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH-HHHhc-CCCHHHHHHHHHHHHHhcCCCCC-hh
Q 043142 205 ---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL-SACSR-GGLFDEGRMFFESMVRDYHIDPS-VQ 278 (512)
Q Consensus 205 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~ 278 (512)
.+..+|..++..|...|++.+|.-+-+.....-+.+..+...+. ..|.. ...-++|..++++-. .+.|+ ..
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~ 439 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTP 439 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHH
Confidence 46789999999999999999999888777665445666666553 33332 234577899988776 56784 56
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
..+.+...+...|..++++.++++. ...||....+.|...++..+.+++|...|..++.++|.+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 6778889999999999999999887 668999999999999999999999999999999999988643
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=8.6e-09 Score=91.73 Aligned_cols=222 Identities=10% Similarity=0.014 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043142 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121 (512)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (512)
+.|.++|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..+++.|+.++.+-++. ++-|+.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34556666666666666666666553 334445666666666666666666666665544 233444444455556666
Q ss_pred CChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 122 SCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
++.++|.++++...+.+| +......+...|.-.++++.|...|+.+++-|+. +...|+.+.-+|.-.++++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666666666554 3334555555555566666666666666666643 44555555555555666666665555
Q ss_pred hcC----CCC--chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043142 201 QLR----EKR--VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267 (512)
Q Consensus 201 ~m~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 267 (512)
+.. +++ ...|-.+.......|++..|.+.|+-....+..+...++.|.-.-.+.|++++|..+++..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 432 222 2344445544555555555555555555444444555555555555555666666555555
No 74
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.09 E-value=3.5e-08 Score=98.80 Aligned_cols=341 Identities=12% Similarity=0.050 Sum_probs=209.5
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCCCC----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQR----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF 76 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 76 (512)
+|+.|+-.+|.+||.-|+..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+. .|-..||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 488999999999999999999999998 88887643 5567899999988888887765 5777899
Q ss_pred HHHHHHHhccCChHH---HHHHHHHHH----HhCCC-CChhH-------------HHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 77 PFALKACSALSAIEE---GRRIHEDVI----RNKWE-TDVFV-------------GAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~-~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
+.|+.+|...||+.. .++.+..+. ..|.. |.... -.+++....-.|-++.+++++..++
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998654 333222222 22211 11111 1223444455677777777777775
Q ss_pred hCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc----hHHH
Q 043142 136 ERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV----VSWN 211 (512)
Q Consensus 136 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~ 211 (512)
...-+. ++..+++-+... ....+++........-.|+..++.++++.-.-.|+++.|..++.+|.+++. .-+-
T Consensus 167 vsa~~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 167 VSAWNA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cccccc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 432221 122234444332 233344444333322258999999999999999999999999999998763 2233
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 290 (512)
.++-+ .+....+..+++-|+..|+ |+..|+..-+-.+...|....+....+.- +|+ +...+..+..+....
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~---hg~--tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA---HGF--TAAVRSAACRGLLAN 315 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh---hhh--hHHHHHHHhcccHhH
Confidence 34433 7778888899999999999 99999998888887766533332211110 011 122333333331111
Q ss_pred CChHHH--HHHHHhC------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHhccC
Q 043142 291 GRLDEA--CDLIMQM------RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIE----LEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 291 g~~~~A--~~~~~~m------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~ 358 (512)
.+++.- .-+.... ++.-...+|.. ..-...+|.-++.+++...+.. ..+.+...|..++.-|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 122111 1111111 22222244433 3333447888888888888764 346677788887777766544
Q ss_pred hhHHHHH
Q 043142 359 WEGVAKL 365 (512)
Q Consensus 359 ~~~a~~~ 365 (512)
---...+
T Consensus 395 ~~~~~~i 401 (1088)
T KOG4318|consen 395 RHICSRI 401 (1088)
T ss_pred hhHHHHH
Confidence 3333333
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=4.5e-07 Score=90.17 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=199.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHh----c--
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASA----D-- 153 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~----~-- 153 (512)
...+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..+|..+..++|+...|...+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34567889999999999775443 3445667778889999999999999999999999999999887777665 2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCch-HHHHHHHHHHHcCChHHHHHHHH
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLV-KVARNLFEQLREKRVV-SWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
..+.+...++++.+...- |.......+.-.+..-..+ ..+...+..+..+++. .++.+-..|....+..-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 224666778888776543 2222221121112221222 2344555566677764 45555555665555555555555
Q ss_pred HhHHC----C-----------CCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCh
Q 043142 232 KMKDE----V-----------QPDH--ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 232 ~m~~~----~-----------~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 293 (512)
..... + +|.. .++.-+...|...|++++|..+.+..++. .|+ +..|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 54322 1 1333 34556677788999999999999999843 774 78899999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCc------hH--HHHHHHHHhccChhHH
Q 043142 294 DEACDLIMQMR-VKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEP-HDAG------NY--VILSNIYARAANWEGV 362 (512)
Q Consensus 294 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~~~------~~--~~l~~~~~~~g~~~~a 362 (512)
.+|.+.++... +.+ |...-+-....+.+.|++++|.+.+....+.+. +... .| .-.+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999998883 333 444666667778899999999999998876552 1111 22 2467889999999999
Q ss_pred HHHHHHHHh
Q 043142 363 AKLRKLMID 371 (512)
Q Consensus 363 ~~~~~~m~~ 371 (512)
++-|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 988877654
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.5e-07 Score=83.42 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=88.4
Q ss_pred HHccCChHHHHHHHccCCC------CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 17 YSACDCLHNAHQLFDRIPQ------RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 17 y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
+....++..|+.+++--.. .++..| +..++.+.|++++|+..|..+.+.. .|+...+..+.-...-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 4445677777777654322 133344 3445667788888888887776643 344444444444444456666
Q ss_pred HHHHHHHHHHH--------------hCC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHH
Q 043142 91 EGRRIHEDVIR--------------NKW-----------ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLV 145 (512)
Q Consensus 91 ~a~~~~~~~~~--------------~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~ 145 (512)
+|.++-....+ .+- .....-.-+|..+..-.-.+++|++++.+....+|+-...+
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 66554332211 110 00011112233333333457888888888888887777777
Q ss_pred HHHHHH-hccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 146 TVISAS-ADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 146 ~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
.-+..| .+..-++.+.+++.-.+++ ++.++...|...
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLka 226 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKA 226 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 655555 5566666666666655554 333444444433
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=2.7e-07 Score=78.70 Aligned_cols=195 Identities=14% Similarity=0.086 Sum_probs=97.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMH 220 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 220 (512)
...+.-.|.+.|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|+.... .+-...|....-+|.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 4444445555555555555555555543 33344555555555555555555555555332 2234444444455555
Q ss_pred CChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHH
Q 043142 221 GHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 297 (512)
|++++|...|++....-. --..||..+.-+..+.|+.+.|..+|++.++. .| .......+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHH
Confidence 555555555555544322 22344555555555555555555555555422 33 2344445555555555555555
Q ss_pred HHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 298 DLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 298 ~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.+++.. +..++..+....|..-...||.+.+.+.-.++....|..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 555544 223444444444444455555555555555554444443
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.8e-06 Score=82.42 Aligned_cols=350 Identities=16% Similarity=0.138 Sum_probs=192.6
Q ss_pred HHHccCChHHHHHHHccC---CCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHH
Q 043142 16 LYSACDCLHNAHQLFDRI---PQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSALSAIEE 91 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 91 (512)
.....|+++.|...|-.. .++|-+.|+.-..+|+..|++++|++=-.+-++ +.|+. ..|+-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 445689999999999874 345888999999999999999999887776665 56774 479999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHH------hhhhCCC------ChhHHHHHHHHHhcc-----
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD------KILERDP------SEATLVTVISASADI----- 154 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~~p------d~~t~~~ll~~~~~~----- 154 (512)
|...|..-++.. +.+...++.|.+++.-.. .+.+.|. ... .+| ...+|..++...-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999888775 567778888888772110 0011110 000 000 001111111111000
Q ss_pred --CChHHHHHHHHHHHH--------cC-------CCC----------------------chHHHHHHHHHHHhcCCHHHH
Q 043142 155 --AALPQGRELHGFSWR--------HR-------FEL----------------------NVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 155 --~~~~~a~~~~~~~~~--------~g-------~~~----------------------~~~~~~~li~~y~~~g~~~~A 195 (512)
.+.+...+.+..+.. .| ..| -..-...+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000000000000000 00 000 011233344444445555555
Q ss_pred HHHHHhcCCCC--chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHH-------HHHHHHHHhcCCCHHHHHHHHHH
Q 043142 196 RNLFEQLREKR--VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHIT-------FVGVLSACSRGGLFDEGRMFFES 266 (512)
Q Consensus 196 ~~~~~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~~~ 266 (512)
.+-+....+.+ +.-++....+|...|...+....-....+.|--...- +..+..++.+.++++.|+.+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 55554433221 2223333344444444443333333332222211111 11122233334445555555544
Q ss_pred HHHhcCCCCChhH-------------------------HHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHH
Q 043142 267 MVRDYHIDPSVQH-------------------------YTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSC 319 (512)
Q Consensus 267 ~~~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~ 319 (512)
....+ ..|+... .-.=...+.+.|++..|...+.++ ...|+ ...|.....+|
T Consensus 324 aLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred Hhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 43331 1222110 011133456677888888877776 33454 44788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+.|.+..|..-.+..++++|+....|.-=..++....+|++|.+.|++-.+.+
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888877777777777777788888888887776655
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=5.9e-06 Score=80.27 Aligned_cols=193 Identities=12% Similarity=0.014 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH--HHHHHHHHHHhc
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH--ITFVGVLSACSR 253 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~--~t~~~ll~a~~~ 253 (512)
.+...+...|++++|...+++..+. +...+..+...|...|++++|...+++.....+ |+. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555554321 233444455555555555555555555544332 121 123344455555
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhccCChHHHHHH---HHhC-CCCCC---HhHHHHHHHHHHHcC
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPSVQHY-T--CMVDLLGHSGRLDEACDL---IMQM-RVKPD---PGVWGALLNSCKLHG 323 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g 323 (512)
.|++++|..+++.........+..... + .++..+...|....+.++ .... +..|. .........++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 566666666665553211101111100 0 122222223322222221 1110 00011 112224555566777
Q ss_pred CHHHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 324 HVKLAELALEKLIELE-P--------HDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 324 ~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+.+.|..+++.+.... . ...........++...|++++|.+.+......+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7888888877776532 1 123344456667789999999999998877654
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=1.5e-05 Score=77.83 Aligned_cols=358 Identities=14% Similarity=0.183 Sum_probs=216.2
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCCC-----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIPQ-----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK 81 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 81 (512)
+-.|-.-+....++|++...++.|++... .....|...+......|-++-++.+|++.++. .|. .-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 34566666777788888888888877432 13445777776666677777777777776652 232 2444455
Q ss_pred HHhccCChHHHHHHHHHHH----------------------------------------HhCC--CCC--hhHHHHHHHH
Q 043142 82 ACSALSAIEEGRRIHEDVI----------------------------------------RNKW--ETD--VFVGAALIDM 117 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~----------------------------------------~~g~--~~~--~~~~~~li~~ 117 (512)
.++..+++++|.+.+..++ +.|+ -+| ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5555666665555443322 1111 112 2457888888
Q ss_pred HHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHH----------------------------------------------
Q 043142 118 YAKCSCVVNARQVFDKILERDPSEATLVTVISAS---------------------------------------------- 151 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~---------------------------------------------- 151 (512)
|.+.|+++.|..+|++....-.+...|..+..+|
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 8888888888888877654321111111111111
Q ss_pred --------------------hccCChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 043142 152 --------------------ADIAALPQGRELHGFSWRHR-----FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR 206 (512)
Q Consensus 152 --------------------~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 206 (512)
...|+..+-...+.++++.- +..-...|..+...|-..|+++.|+.+|++..+-+
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11234445555555555431 11123467788899999999999999999887543
Q ss_pred -------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC------------C------CHHHHHHHHHHHhcCCCHHHHH
Q 043142 207 -------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ------------P------DHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 207 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------p------~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
...|..-...=.++.+++.|+.+++....... + +...|...++.--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 24566656666677888888888877542211 1 1122333344444567788888
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-C-C-CCCHh-HHHHHHHHHHH---cCCHHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-R-V-KPDPG-VWGALLNSCKL---HGHVKLAELALEK 334 (512)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~~-~~~~ll~~~~~---~g~~~~A~~~~~~ 334 (512)
.+|+.++.-.=..|.. .-.....+-...-++++.+++++- + + -|++. .|++.+..+.+ ...++.|..+|++
T Consensus 498 ~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888887542233432 222223345566788899998876 2 2 25555 89888877754 3468999999999
Q ss_pred HHhcCCCCCc--hHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 335 LIELEPHDAG--NYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 335 ~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+++.-|+... .|...+..-.+-|....|..++++..
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9997775322 33333344455688888888888754
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=9.3e-08 Score=88.50 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc----CCCH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR----GGLF 257 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~----~g~~ 257 (512)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. +..+...+..++.. ...+
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhH
Confidence 334555566666666666544 334444455566666666666666666665432 22233333333322 2346
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCH-HHHHHHHHH
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHV-KLAELALEK 334 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~-~~A~~~~~~ 334 (512)
.+|.-+|+++.++ ..+++.+.+.+..++...|++++|.+++++. ...|+ ..+...++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6666666666432 3345555666666666666666666666554 22232 23444555555555555 555566666
Q ss_pred HHhcCCCC
Q 043142 335 LIELEPHD 342 (512)
Q Consensus 335 ~~~~~p~~ 342 (512)
+....|..
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 66666654
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.4e-06 Score=80.10 Aligned_cols=143 Identities=18% Similarity=0.153 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 223 STKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFE--------SMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
+.+|.+++...-+..+ -........+......|+++.|..++. .+. +.+. .+.+...++..|.+.++.
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhcc--ChhHHHHHHHHHHhccCC
Confidence 4445555554444333 223444455566677899999999888 443 2233 345566778888888876
Q ss_pred HHHHHHHHhC--------CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 294 DEACDLIMQM--------RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 294 ~~A~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
+.|..++.+. .-.+.. .+|.-+..--.++|+-++|..+++++.+.+|++..+...++.+|++. +.+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 6666666544 112211 23444444446789999999999999999999999999999999876 5666666
Q ss_pred HHHHH
Q 043142 365 LRKLM 369 (512)
Q Consensus 365 ~~~~m 369 (512)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 65443
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=6.9e-06 Score=90.34 Aligned_cols=363 Identities=10% Similarity=0.001 Sum_probs=231.1
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchH--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFL--WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
......|...|++.+|.............. ...........|++..+...++.+.......+..........+...++
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 344555667788888877776665442211 111223445668888777777765322111222233344455667889
Q ss_pred hHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh------hHHHHHHHHHhcc
Q 043142 89 IEEGRRIHEDVIRNKWE------TD--VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE------ATLVTVISASADI 154 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~------~t~~~ll~~~~~~ 154 (512)
++++...+....+.--. +. ......+...+...|++++|...+++..+..|.. .+.+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 99999988877553111 11 1122233455678999999999999876533321 2344555566789
Q ss_pred CChHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRH----RF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-------KR----VVSWNAMITGYA 218 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~ 218 (512)
|+++.|...+...... |. .....+...+...+...|+++.|...+++... ++ ...+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999999999887653 21 11123456677788899999999998876532 11 123445556677
Q ss_pred HcCChHHHHHHHHHhHHC----CC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHh
Q 043142 219 MHGHSTKALDLFEKMKDE----VQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHY-----TCMVDLLG 288 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~----~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~ 288 (512)
..|++++|...+.+.... +. .....+..+.......|+.++|...+........-......+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 789999999999887543 11 123344556667788999999999988875321111111111 11224456
Q ss_pred ccCChHHHHHHHHhCCCC--CCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhc
Q 043142 289 HSGRLDEACDLIMQMRVK--PDP----GVWGALLNSCKLHGHVKLAELALEKLIELEP------HDAGNYVILSNIYARA 356 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~ 356 (512)
..|+.+.|..++...... ... ..+..+..++...|+.++|...++++..... ....+...+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 689999999998776311 111 1244566778889999999999999887521 1234667788899999
Q ss_pred cChhHHHHHHHHHHhCC
Q 043142 357 ANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 357 g~~~~a~~~~~~m~~~g 373 (512)
|+.++|...+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=1.4e-05 Score=77.72 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Cc--hHHHHHHHHHHH
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK-----RV--VSWNAMITGYAM 219 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~--~~~~~li~~~~~ 219 (512)
+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555543 333445555666666666666666666654431 11 234455566666
Q ss_pred cCChHHHHHHHHHhHHCCC--CCHHHH-H--HHHHHHhcCCCHHHHHHH---HHHHHHh-cCCCCChhHHHHHHHHHhcc
Q 043142 220 HGHSTKALDLFEKMKDEVQ--PDHITF-V--GVLSACSRGGLFDEGRMF---FESMVRD-YHIDPSVQHYTCMVDLLGHS 290 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~--p~~~t~-~--~ll~a~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~ 290 (512)
.|+.++|+.+|++.....+ +..... + .++.-+...|..+.+.+. ....... .+ ..........+.++...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcC
Confidence 6777777777766543222 111111 1 222223333332222222 1111100 00 01112222455666777
Q ss_pred CChHHHHHHHHhCC--CCC---CH----hHHHHHHH--HHHHcCCHHHHHHHHHHHHhc
Q 043142 291 GRLDEACDLIMQMR--VKP---DP----GVWGALLN--SCKLHGHVKLAELALEKLIEL 338 (512)
Q Consensus 291 g~~~~A~~~~~~m~--~~p---~~----~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~ 338 (512)
|+.++|...++.+. ... .. .+-..++. ++...|+.+.|.+.+..++..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888777661 111 11 11122233 346788999999888888764
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=1.4e-05 Score=77.97 Aligned_cols=174 Identities=16% Similarity=0.209 Sum_probs=117.7
Q ss_pred CChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCcchHHHHHHHHhccCChHHHHHHHHHH
Q 043142 21 DCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-GLVPDNFTFPFALKACSALSAIEEGRRIHEDV 99 (512)
Q Consensus 21 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 99 (512)
..++.++....+|+. .|-.-+..+.++|+.......|++.+.. .+.--...|...+.-....+-++.+..+++..
T Consensus 89 ~c~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 345667777777764 7888888999999999999999988654 23333457888888888889999999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-------C-ChhHHHHHHHHHhccCChHH---HHHHHHHHH
Q 043142 100 IRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-------P-SEATLVTVISASADIAALPQ---GRELHGFSW 168 (512)
Q Consensus 100 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------p-d~~t~~~ll~~~~~~~~~~~---a~~~~~~~~ 168 (512)
++. ++..-+..|..+++.+++++|.+.+......+ + +...|..+-...++..+.-. ...+++.++
T Consensus 165 Lk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred Hhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 865 34447788999999999999999998887654 2 22334444444444333222 222233222
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
..=...-...|++|.+-|.+.|.+++|..+|++.
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2211112356677777777777777777777653
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=6.1e-08 Score=93.00 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=173.2
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHH
Q 043142 152 ADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALD 228 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~ 228 (512)
.+.|++.+|.-.|+..++.. |-+...|--|....+..++-..|+..+++..+-| ....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56788888888888888875 5567888888888888888888998888877644 4666677778888888889999
Q ss_pred HHHHhHHCCCCCHHHHHH-------HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 229 LFEKMKDEVQPDHITFVG-------VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 229 ~~~~m~~~~~p~~~t~~~-------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
.++.-....+|-...-.. .-..+.....+....++|-.+....+.++|+.++..|.-.|--.|.+++|.+.|+
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 998875543211100000 0012223334556667777776666766788889999999999999999999999
Q ss_pred hC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 302 QM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 302 ~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.. .++|+.. .||-|...++...+.++|+..|++++++.|.-.++...|.-.|...|.+++|.+.|=.....
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 88 6778655 99999999999999999999999999999999999999999999999999999998766543
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=4.4e-07 Score=89.17 Aligned_cols=205 Identities=16% Similarity=0.239 Sum_probs=127.8
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
......+.+|..+++.+..+.. ....|..+.+-|+..|+++.|+++|-+.. .++--|..|.++|++++|..+-
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 3344556666666665554432 22345566677777777777777775542 2344566677777777777765
Q ss_pred HHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH
Q 043142 231 EKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP 309 (512)
Q Consensus 231 ~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 309 (512)
.+. .++ .....|..-..-.-+.|++.+|+++|-.+. .|+. .|.+|-+.|..++.+++.++..-..-.
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 443 234 444556555566667777777777765542 3443 467788888888888777776311122
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
.|...+..-+-..|+++.|+.-|-++ .-|..-+++|-..+.|++|.++-+.--..+..+....-|
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 36666777777888888888777665 345567788888889998888766533333334444444
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.2e-06 Score=77.39 Aligned_cols=305 Identities=15% Similarity=0.104 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH-HHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAA-LIDMYA 119 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~ 119 (512)
+++.+..+.+..++++|++++..-.+...+ +....+.+..+|....++..|...++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 344454555566666666666555443211 3344555555555666666666666665544 233222221 123344
Q ss_pred hCCChHHHHHHHHhhhhCCCChhHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 043142 120 KCSCVVNARQVFDKILERDPSEATLVTVISA--SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197 (512)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 197 (512)
+.+.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+.++.-..| +..+.+...-...+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 556666666666555432 111111111111 123344444444444332211 22222233333344455555555
Q ss_pred HHHhcCCC----CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 198 LFEQLREK----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 198 ~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
-|+...+- ....||.-+. ..+.|+.+.|+++..++.+.|+-+..-+++ |..-++.. .+.+ |
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI--------Gm~tegiD-vrsv----g- 230 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI--------GMTTEGID-VRSV----G- 230 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc--------cceeccCc-hhcc----c-
Confidence 55444331 1234443322 223344445555555554444411111110 00000000 0000 0
Q ss_pred CCChhHHHHHH-------HHHhccCChHHHHHHHHhCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 274 DPSVQHYTCMV-------DLLGHSGRLDEACDLIMQMR----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 274 ~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.|-..+-+.++ ..+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++....+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 01112223333 34568899999999999994 34566766554322 23456667777777888889877
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHH
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
+.+|..++-.|++..-++-|..++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88999999999999999999888754
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=4e-07 Score=84.29 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=141.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-c---hHHHH-HHHHHHH
Q 043142 145 VTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR-V---VSWNA-MITGYAM 219 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~---~~~~~-li~~~~~ 219 (512)
..+.+++...|..+.+. ..+.+.. .|.......+...+...++-+.+..-+++..... . .++.. ....+..
T Consensus 39 ~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 34444555555544322 2222222 4555555555544444355566666665443222 1 12222 2234566
Q ss_pred cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH----HHhccCChHH
Q 043142 220 HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD----LLGHSGRLDE 295 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~ 295 (512)
.|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|. +...|.. .+.-.+.+.+
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcH-HHHHHHHHHHHHHhCchhHHH
Confidence 79999999988653 456666778889999999999999999995 345553 3333333 3333457999
Q ss_pred HHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh-hHHHHHHHHHHhC
Q 043142 296 ACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW-EGVAKLRKLMIDR 372 (512)
Q Consensus 296 A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 372 (512)
|..+|+++ ...+++.+.+.+..++...|++++|+++++++++.+|.++.+...++......|+. +.+.+++..++..
T Consensus 186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999 34577788999999999999999999999999999999999999999999999998 6677888887764
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.81 E-value=2e-05 Score=77.07 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=81.1
Q ss_pred CChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHHHHHHH
Q 043142 21 DCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSALSAIEEGRRIH 96 (512)
Q Consensus 21 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 96 (512)
|+-++|......... ++-+.|..+.-.+-...++++|++.|...... .||. ..+.-+--.-++.++++......
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444555444444332 23455555555555555566666666555542 2332 23333333334445555544444
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC---CChhHHHHHHH------HHhccCChHHHHHHHHHH
Q 043142 97 EDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD---PSEATLVTVIS------ASADIAALPQGRELHGFS 167 (512)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~ 167 (512)
.+..+.. +.....|..+.-++.-.|+...|..+.+...+.. |+...+..... .....|.++.|.+.....
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 4444432 2334445555555555555555555555544322 44433322211 123344444444443332
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 205 (512)
... +......-..-.+.+.+.+++++|..++..+..+
T Consensus 212 e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 212 EKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 221 1111122223344555566666666666655543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=9.7e-06 Score=73.20 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH---HHHHhccCChHHHHHHHHHHHHhCCCCChhHHH-
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA---LKACSALSAIEEGRRIHEDVIRNKWETDVFVGA- 112 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 112 (512)
++.-.--+...+...|++..|+.-|...++- .|+. |.++ ...|...|.-..|..-+..+++. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--Cchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3344445677888889999999999988763 3443 4444 34577778888888888888776 56643221
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCCCChhHH----------------HHHHHHHhccCChHHHHHHHHHHHHcCCCCch
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERDPSEATL----------------VTVISASADIAALPQGRELHGFSWRHRFELNV 176 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~----------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 176 (512)
--...+.+.|.++.|..-|+.....+|+..+- ...+..+...|+...+......+++.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 12345778999999999999998888753221 112223333444445554444444432 3344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
..+..-..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444455555555555544333322 2233333333444444454444444444443
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=7.7e-09 Score=61.26 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCCCchhHHHHHHHHHHccCChHHHHHHHccCC
Q 043142 1 MGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIP 34 (512)
Q Consensus 1 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 34 (512)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3888999999999999999999999999998884
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=9.7e-07 Score=92.74 Aligned_cols=200 Identities=12% Similarity=0.154 Sum_probs=169.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHH
Q 043142 173 ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--------RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITF 244 (512)
Q Consensus 173 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 244 (512)
|.+...|-..|......+++++|++++++.... -...|-++++.-...|.-+...++|++..+..- -...|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHH
Confidence 455678888889999999999999999987632 246888888888888888889999999876432 23457
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC---CHhHHHHHHHHHH
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP---DPGVWGALLNSCK 320 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~ 320 (512)
..|...|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-+.|..++++. ..-| ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999998876 56788999999999999999999999877 2223 3445566666678
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
++|+.+++..+|+..+...|.....|+..+++-.+.|+.+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999999988775
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.1e-06 Score=84.67 Aligned_cols=242 Identities=16% Similarity=0.140 Sum_probs=184.0
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
-+.+.|++.+|.-.|+.....+|. ...|..|...-+..++-..|...+.+.++.. +.+..+.-+|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 356889999999999999999984 4678888888888888888988888888765 45677788888899999999999
Q ss_pred HHHHHhcCCCC-chHHHHHH---------HHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 196 RNLFEQLREKR-VVSWNAMI---------TGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 196 ~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
.+.|+.-.... ...|...- ..+.......+..++|-++....+ +|......|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99988753211 01110000 112222234456667777655544 7777888888888899999999999
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 264 FESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 264 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
|+.++ .++| |...||.|.-.++...+.++|+..+++. .++|+-+ ++-.|.-+|...|.+++|.+.|-.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 4588 7899999999999999999999999988 7889876 888899999999999999999999987653
Q ss_pred C-----C-----CchHHHHHHHHHhccChhHH
Q 043142 341 H-----D-----AGNYVILSNIYARAANWEGV 362 (512)
Q Consensus 341 ~-----~-----~~~~~~l~~~~~~~g~~~~a 362 (512)
. . ...|..|=.++.-.++.|-+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 3 1 13555555555555555533
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.2e-06 Score=77.88 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=121.9
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---c---hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH-HHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---V---VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH-ITF 244 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~-~t~ 244 (512)
.....+..+...|.+.|++++|...|+++...+ . .+|..+...|.+.|++++|+..++++.+..+ |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345566777777888888888888888765422 1 3566777788888888888888888876655 221 234
Q ss_pred HHHHHHHhcC--------CCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHH
Q 043142 245 VGVLSACSRG--------GLFDEGRMFFESMVRDYHIDPSVQ-HYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL 315 (512)
Q Consensus 245 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 315 (512)
..+..++... |+.++|...|+.+.+. .|+.. .+..+... . ...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~---~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-D---YLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-H---HHHHHH-----------HHHHHHH
Confidence 4445555543 6677788888877644 45322 22211111 0 000000 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHD---AGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...+...|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566889999999999999999987654 4688899999999999999999999887643
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.3e-08 Score=58.51 Aligned_cols=34 Identities=35% Similarity=0.425 Sum_probs=29.8
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 102 NKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
.|++||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778999999999999999999999999998884
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00011 Score=72.15 Aligned_cols=358 Identities=13% Similarity=0.127 Sum_probs=193.9
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC--C-C----------------------------------chHHHHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ--R-N----------------------------------LFLWNVLIRAY 48 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~----------------------------------~~~~~~li~~~ 48 (512)
+.+.|..+.-.+....++++|++.|..... | | ...|..+..++
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 345667766667777888999888876431 1 2 23455555555
Q ss_pred HhcCCchHHHHHHHHHHHCC-CCCCcchHHHHH------HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043142 49 AWNGPYEVAIELYYRLLEIG-LVPDNFTFPFAL------KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121 (512)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (512)
--.|+...|..+.++..... -.|+...|.-.. ......|.++.|.+.+...... +......-..-.+.+.+.
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHH
Confidence 55666777777766665543 134433332221 2234555556665555433221 111222333445566777
Q ss_pred CChHHHHHHHHhhhhCCCChhHHHHHHHHHh-ccCChHHHH-HHHHHHHHcC---CCCchHHHHHHHHHHHhcCCHHHHH
Q 043142 122 SCVVNARQVFDKILERDPSEATLVTVISASA-DIAALPQGR-ELHGFSWRHR---FELNVKVKTALVDMYAKCGLVKVAR 196 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~ 196 (512)
+++++|..++..+..++||...|.-.+..+. ...+..++. .+|....+.- ..|-... ++..--..-.+...
T Consensus 233 ~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----lsvl~~eel~~~vd 308 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LSVLNGEELKEIVD 308 (700)
T ss_pred hhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HHHhCcchhHHHHH
Confidence 7778888888777777777777666555544 233322222 4444443321 1110000 00000011112223
Q ss_pred HHHHhcCCCCc-hHHHHHHHHHHHcCChHH----HHHHHHHhHHC-----------CCCCHH--HHHHHHHHHhcCCCHH
Q 043142 197 NLFEQLREKRV-VSWNAMITGYAMHGHSTK----ALDLFEKMKDE-----------VQPDHI--TFVGVLSACSRGGLFD 258 (512)
Q Consensus 197 ~~~~~m~~~~~-~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-----------~~p~~~--t~~~ll~a~~~~g~~~ 258 (512)
+++..+.++++ ..+..+.+.|-.-...+- +..+...+... .+|.+. |+.-+...+-+.|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 33333334432 233333333322111111 11111111111 124443 4445667788899999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 259 EGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
.|..+.+..+ +-.|+ +..|..=..++...|.+++|..++++.. -.||...-.--..-..+.++.++|.++....
T Consensus 389 ~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 389 VALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 9999999887 44775 4567677788899999999999998873 2344444334455566788999999998887
Q ss_pred HhcCCC---C----CchHHHH--HHHHHhccChhHHHHHHHHHHh
Q 043142 336 IELEPH---D----AGNYVIL--SNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 336 ~~~~p~---~----~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+.+-. + .-.|..+ ..+|.+.|++..|++=|..+..
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 765531 1 1123333 4568888888888876666543
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=3.2e-06 Score=73.93 Aligned_cols=154 Identities=9% Similarity=0.131 Sum_probs=107.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
-+..|.+.|+++......+.+..+. ..|...++.++++..+++.....+.|...|..+...+...|++++|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456777888777655544332221 01223556677777788877777778888888888888888888888
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCC--hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDP-SVQHYTCMVDL-LGHSGR--LDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 262 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
..|++..+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888763 456 66777777775 366666 47888888777 3445 4457777777888888888888888888
Q ss_pred HhcCCCCCchH
Q 043142 336 IELEPHDAGNY 346 (512)
Q Consensus 336 ~~~~p~~~~~~ 346 (512)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 88887765443
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=2.4e-06 Score=87.03 Aligned_cols=355 Identities=14% Similarity=0.054 Sum_probs=209.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHH
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL-VPDNFTFPFALKAC 83 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~ 83 (512)
.+|..|...|....+...|.+.|+..-+ .+..++..+...|++..+++.|..+.-..-+... ..-...|..+.-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3788888889888889999999988654 4778899999999999999999998333222110 00112233344456
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH-HHHHHhccCChHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVT-VISASADIAALPQGRE 162 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~-ll~~~~~~~~~~~a~~ 162 (512)
...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+....+|+..--.. ....-+..|.+.++..
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 67788889999999888776 668899999999999999999999999999998886532222 2222367888999888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHH-------hcCCHHHHHHHHHhcCC-----------CCchHHHHHHHHHH---HcC
Q 043142 163 LHGFSWRHRFELNVKVKTALVDMYA-------KCGLVKVARNLFEQLRE-----------KRVVSWNAMITGYA---MHG 221 (512)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~---~~g 221 (512)
.++.++... .......+.|...+. -.|-..+|...|++-.+ .+...|-.+-.++. +..
T Consensus 652 ~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 652 ALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888776531 011111222222222 22333333333333211 12223322222211 100
Q ss_pred --ChH-HHHHHH-HHhHHCCC-C--------------------CHHHHHHHHHHHhc----C----CCHHHHHHHHHHHH
Q 043142 222 --HST-KALDLF-EKMKDEVQ-P--------------------DHITFVGVLSACSR----G----GLFDEGRMFFESMV 268 (512)
Q Consensus 222 --~~~-~A~~~~-~~m~~~~~-p--------------------~~~t~~~ll~a~~~----~----g~~~~a~~~~~~~~ 268 (512)
-+. ..+.+| .+....+. | +..++..|+..+.+ . .+...|...+...+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 000 001111 11222222 1 12222222222221 1 11224444444444
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
+ +.. +..+|+.|.- ....|.+.-|...|-+. -..| ...+|..+...+..+.+++.|...|.+...++|.+...
T Consensus 811 ~---L~ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~ 886 (1238)
T KOG1127|consen 811 S---LCANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQ 886 (1238)
T ss_pred H---HhhccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHH
Confidence 2 223 3334444433 34445665555555333 1223 44577777777788888999999999999999988888
Q ss_pred HHHHHHHHHhccChhHHHHHHHH
Q 043142 346 YVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
|......-...|+.-++..+|..
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Confidence 88777777788888888888776
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=0.00011 Score=80.83 Aligned_cols=325 Identities=11% Similarity=-0.012 Sum_probs=211.5
Q ss_pred HHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCC--C----CCCcc--hHHHHHHHH
Q 043142 16 LYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG--L----VPDNF--TFPFALKAC 83 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~ 83 (512)
.....|+++.+..+++.++. .+..........+...|++++|..++......- . .|... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456888888888887752 233333344555667899999999998875431 1 11111 111222345
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHhhhhCC-----CC--hhHHHHHHHHHh
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDV----FVGAALIDMYAKCSCVVNARQVFDKILERD-----PS--EATLVTVISASA 152 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----pd--~~t~~~ll~~~~ 152 (512)
...|+++.|...++...+.-...+. ...+.+...+...|++++|...+.+..... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988764212221 344566677888999999999998876431 11 234455666778
Q ss_pred ccCChHHHHHHHHHHHHc----CCC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CC--chHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRH----RFE---LNVKVKTALVDMYAKCGLVKVARNLFEQLRE------KR--VVSWNAMITGY 217 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~----g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~--~~~~~~li~~~ 217 (512)
..|+++.|...+++.... +.. .....+..+...+...|++++|...+++... +. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998877653 221 1233455666777888999999998887532 11 23455566778
Q ss_pred HHcCChHHHHHHHHHhHHCCC--CCHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHH
Q 043142 218 AMHGHSTKALDLFEKMKDEVQ--PDHITF-----VGVLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDLL 287 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~--p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~ 287 (512)
...|+.++|.+.+.+...... .....+ ...+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 889999999999988754211 111111 11223445588999999988776421 11111 11134567778
Q ss_pred hccCChHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 288 GHSGRLDEACDLIMQM-------RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
...|+.++|...+++. +..++. .+...+..++...|+.++|...+.++++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8999999999988776 222222 35666777889999999999999999987643
No 101
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.60 E-value=4.3e-05 Score=76.36 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
.++++.+++..+.+.. |......+---++..++++.|.+...+.++.+-..+...|.-|.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4678888888775422 222222333346778899999999999999876888999999999999999999999999887
Q ss_pred hhCCCChhH-HHHHHHHHhccCChHHHHHHHHHHHH---------------------cCC-------CCchHHHHHHHHH
Q 043142 135 LERDPSEAT-LVTVISASADIAALPQGRELHGFSWR---------------------HRF-------ELNVKVKTALVDM 185 (512)
Q Consensus 135 ~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~g~-------~~~~~~~~~li~~ 185 (512)
.+..|+... ...-+..-...++.+++......++. .|+ .....++..+...
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 766544211 11111111223333333322222111 111 1112222222221
Q ss_pred HH---hcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC
Q 043142 186 YA---KCGLVKVARNLFEQLREKR------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256 (512)
Q Consensus 186 y~---~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~ 256 (512)
.. +.-..+.....+...+.++ ...|......+...+..++|...+.+.....+-....|......+...|.
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 11 1111111212222222233 13566777788889999999988888877666566667767777888999
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHH--HHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHH
Q 043142 257 FDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACD--LIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
.++|.+.|.... -+.| ++...+++..++.+.|+..-|.. ++..+ ++.|+ ...|-.|...+.+.|+.+.|-+.
T Consensus 700 ~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 700 LEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 999999999876 5788 67788999999999998777777 77777 55664 55999999999999999999999
Q ss_pred HHHHHhcCCCCC
Q 043142 332 LEKLIELEPHDA 343 (512)
Q Consensus 332 ~~~~~~~~p~~~ 343 (512)
|..+.++++.+|
T Consensus 777 f~aa~qLe~S~P 788 (799)
T KOG4162|consen 777 FQAALQLEESNP 788 (799)
T ss_pred HHHHHhhccCCC
Confidence 999999987665
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.59 E-value=0.00031 Score=63.74 Aligned_cols=308 Identities=13% Similarity=0.066 Sum_probs=203.9
Q ss_pred HHHHHHccCChHHHHHHHccCCCCCchHHHHHH---HHHHhcCCchHHHHHHHHHHHCCCCCCcchH-HHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLI---RAYAWNGPYEVAIELYYRLLEIGLVPDNFTF-PFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~ 88 (512)
|...+.-.|.+.+|+.-|....+-|+..|-++- ..|...|+..-|+.=|.+.++ ++||-..- .--...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 344555678899999999888877777777664 578889999999999999887 57774221 112245678999
Q ss_pred hHHHHHHHHHHHHhCCCCC--hh------------HHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhc
Q 043142 89 IEEGRRIHEDVIRNKWETD--VF------------VGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASAD 153 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~--~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~ 153 (512)
+++|..-|..+++.....+ .. ..-..+..+...|+...|+.....+.+..|-. ..+..=..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 9999999999998753111 11 11233445667899999999999999988744 445555667788
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHh
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKM 233 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 233 (512)
.|.+..|..=+..+-+.. ..+....-.+-..+...|+.+.++...++..+-|...-.+. ..|-+ ..+....++.|
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf-~~YKk---lkKv~K~les~ 276 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF-PFYKK---LKKVVKSLESA 276 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH-HHHHH---HHHHHHHHHHH
Confidence 999999887777766654 33455566677888899999999999888776554211110 00111 11222222222
Q ss_pred HHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 234 KDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-----VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 234 ~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
. .....+.+.++..-.+...+. .|. ...+..+-.++...|++.+|++...+. .+.|
T Consensus 277 e---------------~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 277 E---------------QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred H---------------HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 2 122334455555555555432 332 233445566677777888887777665 4556
Q ss_pred C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 308 D-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 308 ~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
| +.++.--..+|.....++.|+.-|+++.+.++++..+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5 4577777777888888888888888888888877543
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.59 E-value=0.00076 Score=65.05 Aligned_cols=158 Identities=11% Similarity=0.127 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P-DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.+|...+..-.+..-...|..+|.+..+.+. + +....++++.-+| +++.+-|.++|+.-.+++|-. +.-....++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 3455555555556666777777777777666 5 5555555555444 466677777777666554332 333455666
Q ss_pred HHhccCChHHHHHHHHhC---CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhc
Q 043142 286 LLGHSGRLDEACDLIMQM---RVKPDP--GVWGALLNSCKLHGHVKLAELALEKLIELEPHD----AGNYVILSNIYARA 356 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m---~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 356 (512)
.+...++-..|..+|++. .+.|+. ..|..+|.--..-|+...+.++-++....-|.+ ...-..+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 666777777777777766 123332 377777777777777777777777666544411 12334555566555
Q ss_pred cChhHHHHHHHH
Q 043142 357 ANWEGVAKLRKL 368 (512)
Q Consensus 357 g~~~~a~~~~~~ 368 (512)
+.+..-..-++.
T Consensus 524 d~~~c~~~elk~ 535 (656)
T KOG1914|consen 524 DLYPCSLDELKF 535 (656)
T ss_pred ccccccHHHHHh
Confidence 554443333333
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=3.6e-06 Score=73.63 Aligned_cols=147 Identities=12% Similarity=0.190 Sum_probs=116.3
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 292 (512)
+..|...|+++.+....+.+.. |. . .+...++.+++...++..++. .| +...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~---~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD---PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC---cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCC
Confidence 3568899998886554433221 11 0 222366778888888877644 55 88999999999999999
Q ss_pred hHHHHHHHHhC-CCCCC-HhHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 293 LDEACDLIMQM-RVKPD-PGVWGALLNSC-KLHGH--VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 293 ~~~A~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
+++|...+++. ...|+ ...+..+..++ ...|+ .++|.++++++++.+|.++.++..+...+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 45564 45777777764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 043142 368 LMIDRGI 374 (512)
Q Consensus 368 ~m~~~g~ 374 (512)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=7.4e-06 Score=81.90 Aligned_cols=338 Identities=11% Similarity=0.068 Sum_probs=193.2
Q ss_pred chhHHHHHHH--HHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCcc
Q 043142 6 HPVLATKLVH--LYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-G--------LVPDNF 74 (512)
Q Consensus 6 ~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~ 74 (512)
|+.+-.++++ .|.--|+++.|.+-.+-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455555554 3677799999987776654 4567999999999998888887777666431 1 1232 2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhcc
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~ 154 (512)
+=..+.-.....|.+++|+.+|.+-.+.. .|=..|-..|.+++|.++-+.-.... -..||..-..-+-..
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhh
Confidence 22223333467789999999998876543 34456778899999988765432221 124666666666667
Q ss_pred CChHHHHHHHHHHH----------HcC---------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHH
Q 043142 155 AALPQGRELHGFSW----------RHR---------FELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMIT 215 (512)
Q Consensus 155 ~~~~~a~~~~~~~~----------~~g---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 215 (512)
++.+.|.+.|++.. +.. -..|...|.--....-..|+++.|+.+|.... -|-+++.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~Vr 946 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVR 946 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhee
Confidence 77777777765321 111 01223333333444445677777777766543 3555666
Q ss_pred HHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CC--CChhHHHHHHHH--Hhcc
Q 043142 216 GYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH-ID--PSVQHYTCMVDL--LGHS 290 (512)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~--p~~~~~~~li~~--~~~~ 290 (512)
..+-+|+.++|-++-++- -|......|..-|...|++.+|..+|-+...-.+ +. ..-..-..|.+. ..+.
T Consensus 947 I~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred eEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 666677777776665543 2455555667777777777777777766531000 00 000000111111 1222
Q ss_pred CChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH----------hcCCC-CCchHHHHHHHHHhccCh
Q 043142 291 GRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLI----------ELEPH-DAGNYVILSNIYARAANW 359 (512)
Q Consensus 291 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----------~~~p~-~~~~~~~l~~~~~~~g~~ 359 (512)
.+.-.|-.+|++.|...+ ..+..|-+.|.+.+|+++.-+-. .++|. ||....--.+.+....++
T Consensus 1022 ~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred hhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 334445556666542211 22334556666666665533221 23443 555555566666777777
Q ss_pred hHHHHHHHHHHh
Q 043142 360 EGVAKLRKLMID 371 (512)
Q Consensus 360 ~~a~~~~~~m~~ 371 (512)
++|..++-..++
T Consensus 1097 ekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1097 EKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 777777655543
No 106
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00018 Score=65.46 Aligned_cols=357 Identities=14% Similarity=0.091 Sum_probs=209.5
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCC----------CC-Cc---ch
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL----------VP-DN---FT 75 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p-~~---~t 75 (512)
+...|-..|++++|..++.-+.+ ++...|-.|.-++.-.|.+.+|..+-....+..+ +. |. .+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 34456678999999999887543 4556676676666667777777766544322100 00 11 11
Q ss_pred H-----------HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 76 F-----------PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAA-LIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 76 ~-----------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
| -++.+.....-.+.+|.+++..++... |+-...|. +.-+|.|..-++-+.++++--.+.-||+..
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 1 112222222234678888888887653 44444444 334678888899999999888887777543
Q ss_pred -HHHHHHHHhcc--CChHH--HHH----------HHHHHHHcCC------------CCc-----hHHHHHHHHHHHhcCC
Q 043142 144 -LVTVISASADI--AALPQ--GRE----------LHGFSWRHRF------------ELN-----VKVKTALVDMYAKCGL 191 (512)
Q Consensus 144 -~~~ll~~~~~~--~~~~~--a~~----------~~~~~~~~g~------------~~~-----~~~~~~li~~y~~~g~ 191 (512)
.+..+....+. |+..+ -.. .-+.+.+.++ -|. +..--.|+--|.+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 33222222221 21111 111 1112222211 011 1223345666889999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------hHHHHHHHHHhHHCCC-CCH-HHHHHHHHHHhcCCCHHHHHH
Q 043142 192 VKVARNLFEQLREKRVVSWNAMITGYAMHGH-------STKALDLFEKMKDEVQ-PDH-ITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 192 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~-p~~-~t~~~ll~a~~~~g~~~~a~~ 262 (512)
+++|..+..++....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+. -|. .--.++.+++.-..++++.+.
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999888765444333222222333333 3445555554433333 222 223345556666678899999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Q 043142 263 FFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALL-NSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+++.+ +.+=...|...+ .+..+++..|.+.+|+++|-++. .-.|..+|.+++ ++|...+.++.|-.++ ++.+
T Consensus 381 YlnSi-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~ 455 (557)
T KOG3785|consen 381 YLNSI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTN 455 (557)
T ss_pred HHHHH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcC
Confidence 99988 454334444444 46889999999999999998873 113566676655 5567888888776554 4444
Q ss_pred -CCCCc-hHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 043142 340 -PHDAG-NYVILSNIYARAANWEGVAKLRKLMIDRGIKK 376 (512)
Q Consensus 340 -p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 376 (512)
|.+.. ....+.+-|.+++.+--|.+.|+.+...+..|
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 33332 33456778999999999999999998766544
No 107
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=3.7e-05 Score=72.27 Aligned_cols=226 Identities=10% Similarity=0.036 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISASADIA-ALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
++..+-..+.+.++.++|+.+.+++.+.+|+..| |+.--.++...+ +++++...++.+++.. +.+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pkny----------- 106 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNY----------- 106 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-Ccch-----------
Confidence 3444444555566667777777777666665433 333323333333 2344444444444432 1222
Q ss_pred hcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCh--HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 188 KCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHS--TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.+|+.....+.+.|+. ++++.+++++.+..+-|..+|.....++...|+++++++.++
T Consensus 107 --------------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 107 --------------------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred --------------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344333333333331 344555555555444455555555555555555555555555
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhcc---CC----hHHHHHHHHh-CCCCCC-HhHHHHHHHHHHHc----CCHHHHHHH
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHS---GR----LDEACDLIMQ-MRVKPD-PGVWGALLNSCKLH----GHVKLAELA 331 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~p~-~~~~~~ll~~~~~~----g~~~~A~~~ 331 (512)
++++. .| +...|+.....+.+. |. .++++++..+ +...|+ ...|+-+...+... ++..+|...
T Consensus 167 ~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 55532 22 333343333333222 11 2344555533 344443 34777777766653 344567788
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcc------------------ChhHHHHHHHHHH
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAA------------------NWEGVAKLRKLMI 370 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 370 (512)
+.++.+.+|.++.+...|++.|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88877778888888888888887643 2366888887774
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=7.1e-06 Score=84.87 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=122.5
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMV 284 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 284 (512)
++..+-.|.....+.|+.++|..+++...+..+-+......+...+.+.+++++|....++... ..| +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHH
Confidence 4667777888888999999999999999887776777788888899999999999999998873 467 567778888
Q ss_pred HHHhccCChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHH
Q 043142 285 DLLGHSGRLDEACDLIMQMR-VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGV 362 (512)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 362 (512)
.++.+.|++++|..+|++.- -.|+ ..+|..+..++...|+.++|...|+++++...+....|+.++ ++...-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 235 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNAD 235 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHH
Confidence 88999999999999999883 3444 458888889999999999999999999987755445544332 333444
Q ss_pred HHHHHHHHhC
Q 043142 363 AKLRKLMIDR 372 (512)
Q Consensus 363 ~~~~~~m~~~ 372 (512)
...++++...
T Consensus 236 ~~~~~~~~~~ 245 (694)
T PRK15179 236 LAALRRLGVE 245 (694)
T ss_pred HHHHHHcCcc
Confidence 4555555433
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=2.9e-05 Score=82.15 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREK-R-VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
+|.+++++-..-|.-+...++|++..+. | ...|..|...|.+.++.++|.++|+.|.+.--.....|...+..+.+..
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 3444444444444444444555544432 1 1334444445555555555555555554432233444444455555555
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
+-+.|..++.+.++...-.-.+....-.+.+-.+.|+.+.+..+|+.. ........|+..+..-.++|+.+.+..+|+
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 555555555544422100002333334444444555555555555444 111123355555555555555555555555
Q ss_pred HHHhcC
Q 043142 334 KLIELE 339 (512)
Q Consensus 334 ~~~~~~ 339 (512)
+++.+.
T Consensus 1659 Rvi~l~ 1664 (1710)
T KOG1070|consen 1659 RVIELK 1664 (1710)
T ss_pred HHHhcC
Confidence 555443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.1e-05 Score=73.19 Aligned_cols=182 Identities=15% Similarity=0.015 Sum_probs=131.1
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc----chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-
Q 043142 35 QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVF- 109 (512)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 109 (512)
......+..+...+.+.|++++|...|+++... .|+. .++..+..++...|++++|...++.+++... .+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCch
Confidence 346677888888999999999999999998774 3432 3566677888999999999999999988752 2222
Q ss_pred --HHHHHHHHHHhC--------CChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHH
Q 043142 110 --VGAALIDMYAKC--------SCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179 (512)
Q Consensus 110 --~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 179 (512)
++..+...+.+. |+.++|.+.|+++...+|+.......+..... ..... ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~---------~~~~~--------~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY---------LRNRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH---------HHHHH--------HHHH
Confidence 455556666654 78899999999999988875432211111110 00000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--C----chHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 180 TALVDMYAKCGLVKVARNLFEQLREK--R----VVSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
..+...|.+.|++++|...|+...+. + ...|..+..++...|+.++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667899999999999999987542 1 367889999999999999999999888654
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=6.5e-06 Score=81.51 Aligned_cols=130 Identities=11% Similarity=0.062 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-chHHHHHHHHHHHcCChHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR--EKR-VVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
++++++.+.++.-.+.. +....+|-.+..++.++++++.|.+.|..-. +|| ..+||.+-.+|.+.++-.+|...+.
T Consensus 499 ~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 44444444444333332 2344566666666777777777777776654 333 4677777777777777777777777
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
+..+.+.-+...+-.-+....+.|.+++|.+.+.++........|..+...++.
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 776655433333444444556677777777777776543322334444444443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=5.2e-06 Score=82.15 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=165.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+|--..--.+...+.+.|-...|..+|++.. .|..++..|...|+..+|..+..+-.+ -+|+...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 4444555667888999999999999999864 466678888888888888888887777 3788888888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 185 MYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
..-..--+++|.++++....+--.+|+.. ..++++++++.+.|+.-....+--..+|-....+..+.++++.|.+.|
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88777788888888887654422222222 233678888888888877776666677877887888888888888888
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 265 ESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 265 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
..-+ ...| +...||.+-.+|.+.|+..+|...+++. +.. -+...|...+-....-|.++.|++++.++..+.
T Consensus 543 ~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8776 4577 5678888888888888888888888777 222 233467777777778888888888888887653
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00035 Score=71.94 Aligned_cols=140 Identities=15% Similarity=0.283 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..|..+..+-.+.|...+|++-|-+. .|+..|..++..+++.|.+++-.+++....++ .-+|.+ -+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHH
Confidence 46888888888889988888887654 47788999999999999999999988877544 445554 45788999
Q ss_pred hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 288 GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
++.+++.+.++++. .||..-...+..-|...|.++.|.-+|... +.|.-|...+...|.+..|...-+
T Consensus 1177 Akt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887764 477777778888888888888888777654 456666677777777766655443
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=6e-05 Score=66.93 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=188.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA-LKACS 84 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~ 84 (512)
-+++.+..+.+..++++|++++..-.++ +....+.|.-+|-...++..|-..|+++-. ..|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3567777778999999999998775543 566788888899999999999999999876 34554444332 34556
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM--YAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 162 (512)
+.+.+..|..+...|... ++...-..-+.+ ....+++..+..+.++.+..+ +..+.+...-...+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-ccchhccchheeeccccHHHHHH
Confidence 677888888888777532 222211111222 234678888888888886432 23334444444467889999999
Q ss_pred HHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------------c---------------hH
Q 043142 163 LHGFSWRH-RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR-----------------V---------------VS 209 (512)
Q Consensus 163 ~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----------------~---------------~~ 209 (512)
-|+...+. |+.| ...||.-+ +..+.|+.+.|.+...++.+++ + ..
T Consensus 166 kFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 166 KFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 99888875 4444 44555443 4556788999988887765432 1 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDL 286 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 286 (512)
+|.-...+.+.|+++.|.+.+-.|.-... .|++|.-.+.-.- ..+++..+..-+.-+. ++.| ...++..++-.
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL---~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL---QQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH---hcCCCChHHHHHHHHH
Confidence 33334456678889999888888865443 6778876654322 2344555555555555 4455 56788888888
Q ss_pred HhccCChHHHHHHHHhC
Q 043142 287 LGHSGRLDEACDLIMQM 303 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m 303 (512)
|++..-++-|-+++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 99999899888888764
No 115
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=7.5e-05 Score=70.25 Aligned_cols=209 Identities=11% Similarity=-0.024 Sum_probs=119.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-ChHHHHHHHHhhhhCCCChh-HHHHHHHHHh
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS-CVVNARQVFDKILERDPSEA-TLVTVISASA 152 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~ 152 (512)
++..+-..+...+..++|..+..++++.. +-+..+|+..-..+.+.| ++++++..++++.+.+|+.. +|+.-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 34445556677889999999999999875 445667877777777888 68999999999999888653 4554443444
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHc---CCh-
Q 043142 153 DIAAL--PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMH---GHS- 223 (512)
Q Consensus 153 ~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~---g~~- 223 (512)
+.+.. +....+.+.+++.. +-+..+|+-..-++.+.|++++|.+.++++.+. +..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 44432 44555555555543 334555655555555666666666666665542 334555544443332 111
Q ss_pred ---HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 224 ---TKALDLFEKMKDEVQPDHITFVGVLSACSRG----GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 224 ---~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
+++++...++....+-|...|+-+...+... +...+|..++....+ ..| +......|++.|+
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLC 266 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHH
Confidence 2444444455444444444444444444431 223334444444432 122 3344444455444
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=4.5e-06 Score=69.02 Aligned_cols=107 Identities=17% Similarity=0.072 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCK 320 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 320 (512)
+.....++...|++++|...|+..+ .+.| +...+..+..++.+.|++++|...|++. ...| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3345556667777777777777765 2345 5666667777777777777777777666 3334 3446677777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
..|++++|...|+++++..|+++..+.....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777777777777776665555444
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00032 Score=70.70 Aligned_cols=322 Identities=13% Similarity=0.078 Sum_probs=200.4
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC-C----------Cc-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ-R----------NL-FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN 73 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 73 (512)
+-.+|..+..|+.+..+++-|.-.+..|.. + |. ..-....-.-.+.|..++|+.+|++.++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 456899999999999999998888877753 1 11 1111222233567999999999999876
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhh----------CC-----
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILE----------RD----- 138 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~----- 138 (512)
|..+=+.|...|.+++|.++-+.--+..+ ..+|.....-+-..++++.|++.|++... .+
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 34444567778999999988664332222 23444455555566778888887765321 11
Q ss_pred ------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHH
Q 043142 139 ------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNA 212 (512)
Q Consensus 139 ------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 212 (512)
.|...|.....-.-..|+.+.|..+|..+.. |-+++...+-.|+.++|-++-++- .|....-.
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYh 972 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYH 972 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHH
Confidence 3444555566666778888888888876653 456777777889999998887654 34444555
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc---------------CCCHHHHHHHHHHHHHhcCCCCCh
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR---------------GGLFDEGRMFFESMVRDYHIDPSV 277 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~---------------~g~~~~a~~~~~~~~~~~~~~p~~ 277 (512)
+...|-..|+..+|..+|.+.+ +|...|..|-. ..+.-.|-.+|++. |..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAq--------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~--- 1037 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQ--------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY--- 1037 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh---
Confidence 7788888999999999888764 23333333322 22333344444433 221
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-----------CC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-----------RV--KPDPGVWGALLNSCKLHGHVKLAELALEKLIEL------ 338 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 338 (512)
....+..|-++|.+.+|+++-=+- .+ ..|+...+.-..-+..+.++++|..++-.+.+.
T Consensus 1038 --~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1038 --AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred --hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122455688888888887753221 11 223334444444456667777776665443221
Q ss_pred ----------------C------CCC---CchHHHHHHHHHhccChhHHHHHHH
Q 043142 339 ----------------E------PHD---AGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 339 ----------------~------p~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
- |+. ......+.+.|.++|.+..|-+-|.
T Consensus 1116 C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1116 CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 0 111 2356678888999998887766554
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.00019 Score=69.05 Aligned_cols=323 Identities=14% Similarity=0.081 Sum_probs=208.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCh
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCV 124 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 124 (512)
.+....|+++.|+.+|.+.+.... +|.+.|+.-..+++..|++++|.+=-.+.++. .|+ ...|+-+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 355678999999999999987643 37778999999999999999998877766665 455 45788888888999999
Q ss_pred HHHHHHHHhhhhCCCChh-HHHHHHHHHhcc---CChHHHHHHHHHHHHcC---CCCchHHHHHHHHH----------HH
Q 043142 125 VNARQVFDKILERDPSEA-TLVTVISASADI---AALPQGRELHGFSWRHR---FELNVKVKTALVDM----------YA 187 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~----------y~ 187 (512)
++|+..|.+-.+.+|+.. .++.+..+.... ++.-..-.++..+.... .......|..++.. |.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999999999998654 455666665111 00000011111111000 00001112222222 22
Q ss_pred hcCCHHHHHHHHHhcC----------------CC------------C----------chHHHHHHHHHHHcCChHHHHHH
Q 043142 188 KCGLVKVARNLFEQLR----------------EK------------R----------VVSWNAMITGYAMHGHSTKALDL 229 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~~ 229 (512)
.-.++..|.-++.... .| | ..-...+.++..+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 2122333333332111 11 0 01355677888888889999999
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--C----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--S----VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+....... .+..-++....++...|.+.+....-...++. |..- + ......+..+|.+.++++.|+.++++.
T Consensus 247 y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 98887665 45555566666777777776666555554433 2111 1 112223444677778888898888775
Q ss_pred ---CCCCCHhHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 304 ---RVKPDPGVW-------------------------GALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 304 ---~~~p~~~~~-------------------------~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
...|+..+- ..=...+.+.|++..|...|.++++.+|+|+..|....-+|.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 112222211 1113446788999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhCC
Q 043142 356 AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~g 373 (512)
.|.+..|++=.+...+.+
T Consensus 405 L~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELD 422 (539)
T ss_pred HhhHHHHHHHHHHHHhcC
Confidence 999999998777766653
No 119
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00043 Score=67.38 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=195.4
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC--SALS 87 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~ 87 (512)
=++.+.+.|++++|.+..+++.. .+...+.+=+-++.+.+.+++|+.+.+.-... ..+.+-+ +=.+| .+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 35778889999999998888653 35667777777889999999999665542210 1111111 23444 4788
Q ss_pred ChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh---hHHHHHHHHHhccCChHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE---ATLVTVISASADIAALPQGREL 163 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~---~t~~~ll~~~~~~~~~~~a~~~ 163 (512)
..++|...+. |..++ ..+...-...+.+.|++++|.++|+.+.+.+.+. .--..++.+-... ..
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~ 161 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV 161 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH
Confidence 9999998887 33333 3355555667889999999999999997765322 1222222221111 11
Q ss_pred HHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCC-----c-----hHHHHHHHHHHHcCCh
Q 043142 164 HGFSWRHRFELN--VKVKTALVDMYAKCGLVKVARNLFEQL--------REKR-----V-----VSWNAMITGYAMHGHS 223 (512)
Q Consensus 164 ~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~-----~-----~~~~~li~~~~~~g~~ 223 (512)
..+......|+ -..+-.....+...|++.+|+++++.. .+.| + ..---|.-++...|+-
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 01222222221 222223345677899999999999887 2211 1 1122344567788999
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHH---HHHHhcCCCHHH--HHHHHHHHHHhc----------CCCCChhHHHHHHHHHh
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGV---LSACSRGGLFDE--GRMFFESMVRDY----------HIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~l---l~a~~~~g~~~~--a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~ 288 (512)
++|..++.......++|....... +-+...-.++-. ++..++...... .-.-....-++++.+|
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999998887666332222 112222222111 122222111000 0000111223344444
Q ss_pred ccCChHHHHHHHHhCC-CCCCHhHHHHHHHHH-HHc-CCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhccChhHHHH
Q 043142 289 HSGRLDEACDLIMQMR-VKPDPGVWGALLNSC-KLH-GHVKLAELALEKLIELEPHD-AGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~-g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
.+..+.+.++-...+ ..|.. .+..++..+ ... .....|.+++....+..|.+ ......++......|+++.|.+
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 355677777777774 33443 444444443 222 24777888888888888876 3344566777889999999999
Q ss_pred HHH
Q 043142 365 LRK 367 (512)
Q Consensus 365 ~~~ 367 (512)
++.
T Consensus 398 il~ 400 (652)
T KOG2376|consen 398 ILS 400 (652)
T ss_pred HHH
Confidence 999
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=4.7e-05 Score=79.75 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
+.++-.+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4466667778888999999999999999999998777777777775
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=0.00051 Score=68.40 Aligned_cols=264 Identities=15% Similarity=0.123 Sum_probs=152.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHH
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQ 159 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~ 159 (512)
+.+......+.+|..+++.+.... .-...|..+.+-|+..|+++.|.++|-+. ..+...|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-------chhHHHHHHHhccccHHH
Confidence 444455566666666666555442 22334555666677777777777776553 224455666666666666
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
|.++-.+. .|.......|-+-..-.-+.|++.+|+++|-.+.+|+. -|..|-++|..++.+++..+-... -
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d--~ 880 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--H 880 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh--h
Confidence 65554332 23334445555555556666777777777666666553 245566677777666666543211 1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCC---CCC-HhHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRV---KPD-PGVWGAL 315 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~-~~~~~~l 315 (512)
-..|-..+..-+...|++..|+..|-+.. -|.+-+++|-..+.+++|.++-+.-+- ... ...|.--
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 22345556667777888888887776552 255677888888999998888765431 111 1133221
Q ss_pred ------HHHHHHcCCHHHH-------------HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 316 ------LNSCKLHGHVKLA-------------ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 ------l~~~~~~g~~~~A-------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+..+.++|-++.| ..+.+-..+.. -+....-+...+...|++++|.+.+-+..+.+
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2223344444444 33333333222 23455566677788999999988776665543
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=7.3e-06 Score=67.77 Aligned_cols=114 Identities=9% Similarity=-0.111 Sum_probs=82.3
Q ss_pred HHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 043142 29 LFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDV 108 (512)
Q Consensus 29 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 108 (512)
+|++..+.++..+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+..++.. +.+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~ 92 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHP 92 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCc
Confidence 4555444444456666777778888888888888877643 2244567777777888888888888888888765 5577
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHH
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATL 144 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~ 144 (512)
..+..+..++.+.|+.++|+..|+...+..|+...+
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777788888888888888888888888777765443
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=0.00014 Score=74.70 Aligned_cols=324 Identities=16% Similarity=0.122 Sum_probs=191.8
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH--HHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK--ACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
|...|..+..+|.+.|++..|+++|.+... +.|+. +|...-. .-+..|.+.++...++.++... .......+.|
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gL 670 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGL 670 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhH
Confidence 677888888999999999999999888765 44543 3333222 2356688888888888776542 1111122222
Q ss_pred HHHH-------HhCCChHHHHHHHHhhhhC-------C----------------------CChhH--HHHHHHH-HhccC
Q 043142 115 IDMY-------AKCSCVVNARQVFDKILER-------D----------------------PSEAT--LVTVISA-SADIA 155 (512)
Q Consensus 115 i~~~-------~~~g~~~~A~~~~~~m~~~-------~----------------------pd~~t--~~~ll~~-~~~~~ 155 (512)
...+ .-.|-...|...|+...+. . |+.+. +..++.. .-..+
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~ 750 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTG 750 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 2222 2223333333333332221 1 22111 1111111 11122
Q ss_pred Ch---H---HHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cC----CHHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 043142 156 AL---P---QGRELHGFSWRHRFELNVKVKTALVDMYAK----CG----LVKVARNLFEQLR---EKRVVSWNAMITGYA 218 (512)
Q Consensus 156 ~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 218 (512)
.. + .|.+.+-.-++ +..+...|..|+.-|.+ +| +...|...+.... ..+-..||+|.-. .
T Consensus 751 ~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-s 827 (1238)
T KOG1127|consen 751 ALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-S 827 (1238)
T ss_pred cCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-h
Confidence 21 1 11111111111 11223334444433333 22 2345666666544 3456788877655 5
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 297 (512)
..|.+.-|..-|-+-....+.+..+|..+.-.|.+..+++.|...|.... .+.| +...|-.........|+.-++.
T Consensus 828 g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred ccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 56777777777777776666777888888888889999999999999885 5677 6677766666667788888888
Q ss_pred HHHHhC-------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH----------HHhcCCCCCchHHHHHHHHHhccChh
Q 043142 298 DLIMQM-------RVKPDPGVWGALLNSCKLHGHVKLAELALEK----------LIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 298 ~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~----------~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
.+|..- +--|+...|-....-...+|+.++-+...++ .....|+...+|...+....+.+.++
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 888652 2346666666666666777777665554444 34456888889998888888888888
Q ss_pred HHHHHHHHHH
Q 043142 361 GVAKLRKLMI 370 (512)
Q Consensus 361 ~a~~~~~~m~ 370 (512)
+|.....+..
T Consensus 985 ~a~ela~Rli 994 (1238)
T KOG1127|consen 985 AALELATRLI 994 (1238)
T ss_pred HHHHHHHHHH
Confidence 8887776643
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00018 Score=68.58 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=138.7
Q ss_pred ChHHHHHHHccCCC------CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 043142 22 CLHNAHQLFDRIPQ------RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95 (512)
Q Consensus 22 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 95 (512)
++.+++..-+.++. ++...+...+.+......-..+..++. +... ..-..--|...+ .....++++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 34455555555553 244455555554443333223332222 2221 011112243333 34466889999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
+..+++.- +.|+..+....+.+.+.++..+|.+.|+++...+|+. .....+..++.+.|++.+|..++....... +.
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~ 406 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PE 406 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CC
Confidence 99888764 5567777777889999999999999999999998874 455677788888888888888888777664 66
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLS 249 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~ 249 (512)
|+..|..|..+|...|+..+|....- .+|...|++++|...+....+... |+..-+...+.
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~ 470 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARID 470 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 77888888899998888888876543 457788888888888888776643 44443444443
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0011 Score=68.38 Aligned_cols=251 Identities=12% Similarity=0.113 Sum_probs=131.9
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch----HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT----FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGA 112 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 112 (512)
|+..-+.-..++...+-+.+-++++++..-. |+.++ ...++-.-+-.-+...+.+..+++-... .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~----- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD----- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh-----
Confidence 5555666778888888888999998887643 23222 2222222223334445555555544332 122
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCC-----------------------CChhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERD-----------------------PSEATLVTVISASADIAALPQGRELHGFSWR 169 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~-----------------------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (512)
+.......+-+++|..+|++..-.. -.+..|+.+..+-.+.|...+|.+-|-+.
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 2222333444555555555432110 22345556666655555555555444221
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHH
Q 043142 170 HRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGV 247 (512)
Q Consensus 170 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l 247 (512)
.|+..|...++...+.|.+++-.+.+....++ ....=..+|-+|++.++..+..+++. -||......+
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~------gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA------GPNVANIQQV 1200 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc------CCCchhHHHH
Confidence 24455666666666666666666655443321 12223456666666666555443321 1566666666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHc
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 322 (512)
..-|...+.++.|.-+|..+ ..|..|...+...|.+..|.+.-++.. +..||..+-.+|...
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDK 1262 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhch
Confidence 66666666666666665544 235556666666666666665555432 344555544444433
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.7e-05 Score=76.02 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~ 256 (512)
....+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++.....+.+...+..-...|.+.++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34456667777788999999999999888877777788888888888999999999987766677777777777889999
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC
Q 043142 257 FDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD 308 (512)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 308 (512)
.+.|..+.+++. ...| +-.+|..|..+|.+.|++++|+..++.+|+.|.
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999999987 4577 556999999999999999999999999875543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=7.9e-05 Score=65.31 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=76.3
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
-..+...|+.+....+..+.....+.|.......+....+.|++.+|...+++... .-.+|...|+.+.-+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccCh
Confidence 34444445555544444443322223333333445555555555555555555531 1223555555555555555555
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 294 DEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 294 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
++|..-|.+. .+.|+ ....+.|...+.-.|+.+.|..++.......+.+...-..|..+....|++++|.++.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555444 22222 2345555555555566666666655555555555555555555555566665555543
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.1e-06 Score=52.71 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN 73 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 73 (512)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00014 Score=75.56 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHH
Q 043142 72 DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISA 150 (512)
Q Consensus 72 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~ 150 (512)
+...+..|..+..+.|.+++|+.+++.+.+.. +.+......+...+.+.+++++|...+++....+|+..+ ...+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 45556666666666777777777777666653 334455556666667777777777777777776666554 3344445
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
+.+.|++++|..+|+++...+ +.+..++..+...+-+.|+.++|...|+...
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566677777777777776632 3345666666666777777777777776654
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.0057 Score=59.26 Aligned_cols=367 Identities=9% Similarity=0.071 Sum_probs=183.2
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+.|+.+|+.||.-+... .+++++..++++.. | ....|..-|..-.+..+++....+|.+.+..-+. ...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 45778888888888766 88888888888764 3 5667888888888888898888898888765333 33444444
Q ss_pred HHHhcc-CChH----HHHHHHHHHH-HhCCCC-ChhHHHHHHHHH---------HhCCChHHHHHHHHhhhhCC------
Q 043142 81 KACSAL-SAIE----EGRRIHEDVI-RNKWET-DVFVGAALIDMY---------AKCSCVVNARQVFDKILERD------ 138 (512)
Q Consensus 81 ~~~~~~-~~~~----~a~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~------ 138 (512)
.--.+. +... ...+.|+..+ +.|+.+ .-..|+..++.. ....+++..+++++++....
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 432221 2222 2233444333 345433 334566665543 33456677788888877653
Q ss_pred --CChhHHHHHHHHHh-------ccCChHHHHHHHHHHHH--cCCCCchHH---------------HHHHHHHHHhcC--
Q 043142 139 --PSEATLVTVISASA-------DIAALPQGRELHGFSWR--HRFELNVKV---------------KTALVDMYAKCG-- 190 (512)
Q Consensus 139 --pd~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~li~~y~~~g-- 190 (512)
-|-.+|-.-++... +...+-.|+++++++.. .|+..+..+ |-.+|.-=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 12223322222221 23345566666666543 232111111 211221100000
Q ss_pred ----CHH--HHHHHHHhcC---CCCchHHH---HHH----HHHHHcCC-------hHHHHHHHHHhHHCCC-CCHHHHHH
Q 043142 191 ----LVK--VARNLFEQLR---EKRVVSWN---AMI----TGYAMHGH-------STKALDLFEKMKDEVQ-PDHITFVG 246 (512)
Q Consensus 191 ----~~~--~A~~~~~~m~---~~~~~~~~---~li----~~~~~~g~-------~~~A~~~~~~m~~~~~-p~~~t~~~ 246 (512)
..- ...-++++.. ---...|- ..+ ..+...|+ -+++..+++.....-. -+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000000000 00000010 000 11111222 2344444444333222 23333332
Q ss_pred HHHHHh---cCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC---CCC-CHhHHHHHHHHH
Q 043142 247 VLSACS---RGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR---VKP-DPGVWGALLNSC 319 (512)
Q Consensus 247 ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p-~~~~~~~ll~~~ 319 (512)
+.+.-- .-...+....+++++.....++|+. +|..++..-.|..-+..|..+|.+.+ ..+ ++.+.++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222111 1112444445555555444445543 56666666666666777777776662 223 444556665554
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
+ .+|.+-|.++|+--++..++++..-...++.+...++-..++.+|++....++.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 4 355667777777776666666655555666666777777777777777666443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00052 Score=72.18 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=148.8
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA-LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
.+...|..|+..|...+++++|.++.+...+ ..|+...+-.. ...+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3677899999999999999999999997766 45666543322 2244455554444333 33
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 043142 115 IDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKV 194 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 194 (512)
++...+..++.-...+...|....-+...+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 444444444544444444444443344577778888888899999999999988887 66788889999999888 9999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 043142 195 ARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274 (512)
Q Consensus 195 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 274 (512)
|++++.+.. ..|...+++.++.+++.++....+.|...|..++..... ..+..
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~----------------~~~~~ 220 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLG----------------HREFT 220 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHh----------------hhccc
Confidence 988887653 236667788888888888876544333333333322211 11222
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 043142 275 PSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCK 320 (512)
Q Consensus 275 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 320 (512)
--+.++--+...|-...+++++..+++.+ ...| |.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22334444455566666677777777666 3333 3334444555543
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=2.1e-05 Score=64.48 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=69.7
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 273 IDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
..| +......+...+.+.|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3445556666677777777777777665 2233 445666777777777777777777777777777777777777
Q ss_pred HHHHHhccChhHHHHHHHHHHhCC
Q 043142 350 SNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...|...|++++|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 777777777777777777766543
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=3.5e-05 Score=73.91 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEE 91 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 91 (512)
.|+..+...++++.|+.+|+++.+.++..+..|++.+...++..+|++++++..... +-+...+..-...|...++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 333444444455555555555444444444444444444444445555555444321 1122222222333444455555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
|.++.+++.+.. |.+..+|..|...|.+.|+++.|+..++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555544442 2233345555555555555555555544443
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=9.8e-05 Score=64.73 Aligned_cols=166 Identities=14% Similarity=0.042 Sum_probs=130.3
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
|... ..+-..+...|+-+.+..+....... ..-|............+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3334 55667777888888888877765432 12233445557888889999999999999887765 789999999999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
.|.+.|++++|..-|.+..+..|+. ..++.+.-.+.-.|+++.|..++......+ .-|..+-..|.-.....|+++.|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999998887754 457888888888999999999998888775 34667777888888999999999
Q ss_pred HHHHHhcCCCC
Q 043142 196 RNLFEQLREKR 206 (512)
Q Consensus 196 ~~~~~~m~~~~ 206 (512)
+++-..-..+.
T Consensus 222 ~~i~~~e~~~~ 232 (257)
T COG5010 222 EDIAVQELLSE 232 (257)
T ss_pred Hhhccccccch
Confidence 99876655443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00035 Score=66.70 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=118.6
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPF-ALKACSALSAIEEGRRIHEDVIRNKWETD-VFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l 114 (512)
....+....-.+...|++++|+..++.++.. .||...|.. ....+...++.++|.+.++.++... |+ ..+.-.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~ 380 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNL 380 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHH
Confidence 3444444555677889999999999998874 566655544 4577889999999999999999874 44 6777788
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 043142 115 IDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 193 (512)
.++|.+.|+..+|+++++.....+| |+..|..|..+|...|+..++..- ....|...|+++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~ 442 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHH
Confidence 9999999999999999999998887 667899999999999998776554 445677889999
Q ss_pred HHHHHHHhcCC
Q 043142 194 VARNLFEQLRE 204 (512)
Q Consensus 194 ~A~~~~~~m~~ 204 (512)
.|...+....+
T Consensus 443 ~A~~~l~~A~~ 453 (484)
T COG4783 443 QAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHH
Confidence 99998887664
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=2.8e-06 Score=50.63 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP 71 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 71 (512)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3678888888888888888888898888888877
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=2.5e-05 Score=63.72 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+....-.+...+...|++++|..+|+-. .+.|. ...|-.|..++...|++++|+..|.++..++|++|.++..+...+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455566677788999999999999987 34554 458889999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHh
Q 043142 354 ARAANWEGVAKLRKLMID 371 (512)
Q Consensus 354 ~~~g~~~~a~~~~~~m~~ 371 (512)
...|+.+.|++.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998765
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=5.9e-05 Score=61.78 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=87.1
Q ss_pred HHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 043142 229 LFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK 306 (512)
Q Consensus 229 ~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 306 (512)
+|++.....+.+......+...+...|++++|...|+.+... .| +...+..+...|.+.|++++|..++++. ...
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555544444555667777888889999999999888643 34 6778888888888999999999888877 344
Q ss_pred C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 043142 307 P-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAG 344 (512)
Q Consensus 307 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 344 (512)
| +...+..+...+...|++++|...++++++.+|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4557777888889999999999999999999987764
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.0064 Score=62.40 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCC
Q 043142 311 VWGALLNSCKLHGHV---KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSI 378 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 378 (512)
+-+.|+..+.+.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+--+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 346677888887765 47777888888888999999999999999999999999999998777665443
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00087 Score=58.94 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=99.0
Q ss_pred HHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH----hcc
Q 043142 215 TGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL----GHS 290 (512)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~ 290 (512)
..|...|++++|++..+... +......=+..+.+..+++.|.+.++.|.+ +. +..+.+.|..++ .-.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccc
Confidence 34666777777777766521 122222223344566677778877777752 22 334444444444 345
Q ss_pred CChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHH-HHHHH
Q 043142 291 GRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGV-AKLRK 367 (512)
Q Consensus 291 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 367 (512)
+.+.+|.-+|++| +..|+..+.+-...++...+++++|+.+++.++..++.++.+...++-.-...|+..++ .+.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6788888888888 36688888888888889999999999999999999998888888888777777776554 34444
Q ss_pred HHH
Q 043142 368 LMI 370 (512)
Q Consensus 368 ~m~ 370 (512)
..+
T Consensus 267 QLk 269 (299)
T KOG3081|consen 267 QLK 269 (299)
T ss_pred HHH
Confidence 444
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00053 Score=59.82 Aligned_cols=172 Identities=14% Similarity=0.181 Sum_probs=127.1
Q ss_pred CCCch-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHH
Q 043142 172 FELNV-KVKTALVDMYAKCGLVKVARNLFEQLREKRV-----VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFV 245 (512)
Q Consensus 172 ~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~ 245 (512)
..++. .++.-++-+...+|+.+.|..+++.+..+-+ .-..+| -+-..|++++|+++++.+.+..+.|.+++.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 34443 3444555666778999999998888754322 222222 245678999999999999999888888888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHc-
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLH- 322 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~- 322 (512)
.=+-..-..|+--+|++-+....+. +..|...|.-|.+.|...|++++|.-.++++ -..|- ...+..+...+...
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 7777777788888998888888764 4668999999999999999999999999998 34454 34555555554433
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 323 --GHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 323 --g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
.+.+.|.+.|.+.+++.|.+...+.
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 4678899999999999986554433
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0044 Score=54.65 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=74.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc----CCCH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR----GGLF 257 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~----~g~~ 257 (512)
-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .+.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhccchhh
Confidence 344455566666666665552222222222 22334455555666666666532 344444444444432 3345
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHH
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHG-HVKLAELALEK 334 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~ 334 (512)
..|.-+|++|.+ ...|+..+.+.+..+....|++++|..+++.. +...++.+...++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 556666666642 23555555555555666666666666666555 21223333333333332333 33344455555
Q ss_pred HHhcCCCC
Q 043142 335 LIELEPHD 342 (512)
Q Consensus 335 ~~~~~p~~ 342 (512)
+....|..
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 55555544
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=9.3e-06 Score=48.60 Aligned_cols=32 Identities=34% Similarity=0.666 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CC
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PD 240 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~ 240 (512)
+||++|.+|++.|++++|.++|++|.+.|. ||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777776 65
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00053 Score=56.81 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHhhhhCCCCh----hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHH
Q 043142 121 CSCVVNARQVFDKILERDPSE----ATLVTVISASADIAALPQGRELHGFSWRHRFELN--VKVKTALVDMYAKCGLVKV 194 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~ 194 (512)
.++...+...++.+....|+. .....+...+...|++++|...|+.+......++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444455555555554444433 1122222334444444445444444444432221 1122234455555555555
Q ss_pred HHHHHHhcCCCC--chHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 195 ARNLFEQLREKR--VVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 195 A~~~~~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
|...++...... ...+......|.+.|+.++|...|++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554433222 23333444555555555555555543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00071 Score=56.08 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHhHHCCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChH
Q 043142 220 HGHSTKALDLFEKMKDEVQPD---HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 294 (512)
.++...+...++.+....+.+ ......+...+...|++++|...|+.+... ...|. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555566666666665554422 122333445555666666666666666543 21121 123334455556666666
Q ss_pred HHHHHHHhCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 295 EACDLIMQMRVK-PDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 295 ~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
+|+..++..+.. .....+......+...|+.++|...|+++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666554211 12224444455555555565555555543
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.91 E-value=0.00029 Score=55.98 Aligned_cols=102 Identities=14% Similarity=0.220 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALL 316 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 316 (512)
++..+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|...++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666666666666666654321111 1234445566666666666666666655 22222 23455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAG 344 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 344 (512)
..+...|+.++|...++++++..|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666667777777777777766666543
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00016 Score=54.34 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
+..+...+...|++++|..++++. ...|+ ...+..+...+...+++++|.+.+++..+..|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888887766 33343 3567777777788888888888888888888887778888888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 043142 358 NWEGVAKLRKLMIDR 372 (512)
Q Consensus 358 ~~~~a~~~~~~m~~~ 372 (512)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776543
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.4e-05 Score=46.33 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIG 68 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 68 (512)
++||++|++|++.|++++|.++|++|++.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 467777777777777777777777777765
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00011 Score=65.64 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=80.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVK 326 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~ 326 (512)
-..+.+++++|...|...+ .+.| |...|.--..+|.+.|.++.|++-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3456788899999998887 4677 6777777788899999999998877766 5667665 9999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
+|++.|+++++++|++......|-.+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999999987544444333
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0023 Score=56.00 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=123.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
|..++-+....|+.+.|...++++.+.-+-+...-..-..-+-..|.+++|.++++.++++ +| |..++--=+-+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHH
Confidence 3344455667889999999999998876522221111122345579999999999999866 46 6667766666677
Q ss_pred ccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc---ChhHHH
Q 043142 289 HSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA---NWEGVA 363 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~ 363 (512)
..|+.-+|++-+... .+..|...|.-|-..|...|+++.|.-.+++++-..|.++..+..+.+.+.-.| +.+.++
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 778777888777665 355788899999999999999999999999999999999988888888876554 566788
Q ss_pred HHHHHHHhCCC
Q 043142 364 KLRKLMIDRGI 374 (512)
Q Consensus 364 ~~~~~m~~~g~ 374 (512)
+++.+..+...
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888776554
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.5e-05 Score=45.72 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
+|+++|.+|++.|+++.|.++|++|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 444445555555555555555555444444
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00041 Score=55.15 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHH
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD---AGNYVIL 349 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 349 (512)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++++....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999888 22343 2466678889999999999999999999988774 4578888
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCC
Q 043142 350 SNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987754
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=3.6e-05 Score=57.01 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=39.4
Q ss_pred CChHHHHHHHHhC-CCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 291 GRLDEACDLIMQM-RVKP---DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 291 g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555554 1112 233444455555666666666666655 4444444444445566666666666666665
Q ss_pred HH
Q 043142 367 KL 368 (512)
Q Consensus 367 ~~ 368 (512)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=8.4e-05 Score=52.62 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=58.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc-ChhHHHHHHHHHHhC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA-NWEGVAKLRKLMIDR 372 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 372 (512)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45688889999999999999999999999999999999999999999999 799999999887653
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.6e-05 Score=44.51 Aligned_cols=29 Identities=31% Similarity=0.755 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0016 Score=60.89 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=55.6
Q ss_pred HhccCChHHHHHHHHhC-C-----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChh
Q 043142 287 LGHSGRLDEACDLIMQM-R-----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 360 (512)
..+.|++.+|.+.+.+. . .+|+...|.....+..+.|+.++|+.-.+.+++++|.-...|..-.+++...++|+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677776666555 2 33444455555556667777777777777777777766666666666677777777
Q ss_pred HHHHHHHHHHhC
Q 043142 361 GVAKLRKLMIDR 372 (512)
Q Consensus 361 ~a~~~~~~m~~~ 372 (512)
+|.+-++...+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 777777665543
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00037 Score=52.30 Aligned_cols=96 Identities=23% Similarity=0.151 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
|..+...+...|++++|...|++..+... .+...+..+...+...++++.|.+.+....+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 45566666677777777777777665421 122445555666666677777777777766654 3344566666777777
Q ss_pred CCChHHHHHHHHhhhhCC
Q 043142 121 CSCVVNARQVFDKILERD 138 (512)
Q Consensus 121 ~g~~~~A~~~~~~m~~~~ 138 (512)
.|+.+.|...|....+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777665544
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.71 E-value=0.05 Score=51.83 Aligned_cols=329 Identities=12% Similarity=0.102 Sum_probs=181.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+.|+..|-.||.-|...|..++.++++++|..|- ..+|..-|++=....+++....+|.+.....+.. ..|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l--dLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL--DLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH--hHHHHHH
Confidence 4577899999999999999999999999998874 4578888888888888999999999887754443 3344444
Q ss_pred HHHhccCChH------HHHHHHHHHHH-hCCCC-ChhHHHHHHHHHH---------hCCChHHHHHHHHhhhhCC-----
Q 043142 81 KACSALSAIE------EGRRIHEDVIR-NKWET-DVFVGAALIDMYA---------KCSCVVNARQVFDKILERD----- 138 (512)
Q Consensus 81 ~~~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~----- 138 (512)
.-..+....- .-.+.|+.++. .++.| ....|+..++..- ...++|..++.+.+|....
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 4333322111 12233333333 22333 2334444443321 1122334444444444322
Q ss_pred --------------------------------------------------C-ChhH-----------HHHHHH-------
Q 043142 139 --------------------------------------------------P-SEAT-----------LVTVIS------- 149 (512)
Q Consensus 139 --------------------------------------------------p-d~~t-----------~~~ll~------- 149 (512)
| +..| |...|.
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 0 0000 111111
Q ss_pred ----------------------------------HHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 150 ----------------------------------ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 150 ----------------------------------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
-+...++-+.|.+.. ..|.+..+...--+...|.-..+-+..
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv----~rg~~~spsL~~~lse~yel~nd~e~v 352 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTV----ERGIEMSPSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHH----HhcccCCCchheeHHHHHhhcccHHHH
Confidence 111122333333322 234333333222333444444444444
Q ss_pred HHHHHhcCC---------------------------------CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC
Q 043142 196 RNLFEQLRE---------------------------------KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD 240 (512)
Q Consensus 196 ~~~~~~m~~---------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~ 240 (512)
...|+...+ +=...|...+..-.+..-.+.|..+|-+..+.++ ++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 444443220 0023466666666666667777777777777774 66
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhH-HHHHHHHHhccCChHHHHHHHHhC--CCCCC--HhHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQH-YTCMVDLLGHSGRLDEACDLIMQM--RVKPD--PGVWGAL 315 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~l 315 (512)
...+++++.-++ .|+...|..+|+.-... -||... -.-.+..+.+.++-+.|..+|+.. ++..+ ...|..+
T Consensus 433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~km 508 (660)
T COG5107 433 VYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKM 508 (660)
T ss_pred eeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHH
Confidence 777777766544 46667777777765543 233322 244555666777777777777744 22222 3467777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
|.--..-|+...+..+-+++.+.-|..
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777777777777777777777766653
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0022 Score=64.61 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=44.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
+...|.++.-.....|++++|...++++++++| +...|..+...|...|+.++|...+++....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334566555555566777777777777777776 456777777777777777777777776655443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0017 Score=55.55 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PD--HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTC 282 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 282 (512)
...+..+...+...|++++|...|++.....+ +. ...+..+...+.+.|++++|...+.+..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566677777778888888888887766544 22 356677777777888888888888777642 44 4555556
Q ss_pred HHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 283 MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
+...|...|+...+..-++.. ...+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 112577888888888888866 4445555544443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0007 Score=65.22 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=59.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 326 (512)
.+...|++++|+.+|.++++. .| +...|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556666666666666532 34 4555556666666666666666666655 33343 336666666667777777
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
+|+..|+++++++|.++.....+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777666555444333
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00016 Score=50.47 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=45.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+...+...|++++|+..|+++++..|.++..+..+..++...|++++|...+++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566778888888888888888888888888888888888888888888888776543
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0014 Score=63.25 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=79.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 45 IRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
...+...|++++|+++|+++++... -+...|..+..++...|++++|...++.+++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3455677888888888888887532 134567777778888888888888888888775 45677788888888888888
Q ss_pred HHHHHHHHhhhhCCCChhHHHHHHHHH
Q 043142 125 VNARQVFDKILERDPSEATLVTVISAS 151 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~t~~~ll~~~ 151 (512)
++|+..|++..+.+|+...+...+..|
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 889888888888888776665555443
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0032 Score=58.48 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA-CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
+|-.++...-+.+..+.|..+|.+..+.+..+...|...... +...++.+.|..+|+...+.+ ..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 567777777777778888888888875544344445444443 334577777999999988764 44677888889999
Q ss_pred hccCChHHHHHHHHhC-CCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 288 GHSGRLDEACDLIMQM-RVKPDP----GVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+...++.+++.+.-|.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999887 222322 4899999999999999999999999998877643
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.13 Score=53.31 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=92.0
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 043142 49 AWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC--SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126 (512)
Q Consensus 49 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 126 (512)
...+++.+|++....+.+. .||. .|..++.++ .+.|..++|..+++.....+ ..|..+...+-..|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 3457788888888887664 3554 455566654 57788888887777665555 3477888888888888888888
Q ss_pred HHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 127 ARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 127 A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
|..+|++....+|+..-...+..++.+.+++.+-.++--++.+ .++-+...+=+.++.+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 8888888888888877777788888887777665444433333 23444444444454443
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.0028 Score=51.87 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=84.4
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCC-CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIP-QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALK 81 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 81 (512)
+|+-.--..+.+++-+-|.+ ..+..+. +.+....-.+...+...|++++|..+|+.+... .|... -|-.|..
T Consensus 4 ~~~~~~~~~~~~f~~~Ggsl----~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~ 77 (157)
T PRK15363 4 DPTLQQAHDTMRFFRRGGSL----RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGE 77 (157)
T ss_pred CchhhhHHHHHHHHHcCCcH----HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 33333333444444444433 3333444 444555556666677888888888888888763 34443 4555666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER 137 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 137 (512)
+|-..|++++|...|....... +.|+..+-.+..+|.+.|+.+.|++.|+.....
T Consensus 78 ~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 78 CCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888888888888776 467777777888888888888888888776543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0023 Score=54.73 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
....+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+.+.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677777888888999999999988876543332 2467777777888888888888888887764 3456666677
Q ss_pred HHHHHhCCChHHH
Q 043142 115 IDMYAKCSCVVNA 127 (512)
Q Consensus 115 i~~~~~~g~~~~A 127 (512)
...|...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 7777777764333
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.032 Score=52.50 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 321 (512)
.+.+..+.-|...|+...|.++-... ++ |+...|...+.+|+..++|++-.++... +.++..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677778887777765544 44 7888888889999999999887776654 3345788888889988
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99888888887772 2245678888888888887775444
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.0052 Score=57.33 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=69.1
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHh
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG-GLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLG 288 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~ 288 (512)
+..|...|++..|-..+.+ +...|... |++++|.+.|++..+-+.-... ..++..+...+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 4556666666666555443 44566666 7888888887777654322221 345566777888
Q ss_pred ccCChHHHHHHHHhCC---C-----CCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 289 HSGRLDEACDLIMQMR---V-----KPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
+.|++++|.++|++.. . +.+.. .+-..+-.+...||...|.+.+++..+.+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8899999998888762 1 11121 2223334566778999999999999888774
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0011 Score=59.92 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=85.3
Q ss_pred CC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 274 DP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKL---HGHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 274 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
.| |...|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.. .....++..+|++++..+|.|+.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56 8899999999999999999999998877 3333 44466666655533 33567899999999999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCCCccC
Q 043142 348 ILSNIYARAANWEGVAKLRKLMIDRGIKKS 377 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 377 (512)
.|...+...|++.+|...|+.|.+.....+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998765433
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00045 Score=48.14 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=48.2
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 283 MVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
+...+.+.|++++|++.|++. ...|+. ..|..+...+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678888999999998888 445654 4888888889999999999999999999988764
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00061 Score=47.95 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=50.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
...|++++|.++++.+.+.. +.+..++..+..+|.+.|++++|..+++++...+|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 35688888888888888775 45777888899999999999999999999988888866555544
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.48 E-value=0.0016 Score=63.07 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHC--CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEI--GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+....++.......+.+++..++.+.+.. ....-..|..++++.|...|..+.+..++..=+..|+-||..++|.||+
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 33444444444444555555555555443 1112233455666666666666666666666666666666666666666
Q ss_pred HHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHh
Q 043142 117 MYAKCSCVVNARQVFDKILERD--PSEATLVTVISASA 152 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~ 152 (512)
.+.+.|++..|.++...|...+ .+..|+...+.+|.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 6666666666666665554332 23344444444443
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0014 Score=55.97 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
...+..+...+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666667777778888888888776 22222 2478888888999999999999999999998888888888888
Q ss_pred HHH-------hccChhHHHHHHHHH
Q 043142 352 IYA-------RAANWEGVAKLRKLM 369 (512)
Q Consensus 352 ~~~-------~~g~~~~a~~~~~~m 369 (512)
+|. ..|+++.|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888666666544
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00035 Score=51.68 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP-GVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
|+++.|+.+++++.+...-.|+...+..+..+|.+.|++++|..++++.+..|+. ...-.+..++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555433111112233333455555555555555555443222222 222233444555555555555554
Q ss_pred H
Q 043142 334 K 334 (512)
Q Consensus 334 ~ 334 (512)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00022 Score=50.23 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=43.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
...|++++|++.|+++.+.+|.++..+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888888888888888888888888888888888888888888888776543
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0032 Score=47.91 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHhccCC--------hHHHHHHHHHHHHhCCCCChhH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGL-VPDNFTFPFALKACSALSA--------IEEGRRIHEDVIRNKWETDVFV 110 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~ 110 (512)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 8999999999998776532 3356788999999999999999
Q ss_pred HHHHHHHHHh
Q 043142 111 GAALIDMYAK 120 (512)
Q Consensus 111 ~~~li~~~~~ 120 (512)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0048 Score=57.31 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA-CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777777788887776432 1122333333333 22345666688888877765 46677777778888
Q ss_pred HHhCCChHHHHHHHHhhhhCCC
Q 043142 118 YAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+.+.|+.+.|+.+|++....-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLP 101 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSS
T ss_pred HHHhCcHHHHHHHHHHHHHhcC
Confidence 8888888888888887766543
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.00082 Score=48.09 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=50.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
-..+.+.+++++|.++++++++.+|.++..+.....++.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888999999999999999999888888899999999999999999988876543
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0083 Score=56.18 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHhccCChHHHHHHHHH
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNF----TFPFALKACSALSAIEEGRRIHED 98 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 98 (512)
.-+++.|+....+.+|+..++.|.. |-. .|.-|.++|.-.+++++|.++|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 3467888888888888888887643 333 355556677777788888887753
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0025 Score=57.33 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=64.6
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGR 161 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~ 161 (512)
..+.+++++|.+.|...++.. +.|.+.|..-..+|.+.|.++.|++-.+.....||.. .+|..|..++...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 445667777777777777664 4456666666777777777777777777777777644 46777777777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHH
Q 043142 162 ELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+.|...+.. .|+-.+|-.=+.
T Consensus 170 ~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhcc--CCCcHHHHHHHH
Confidence 776666553 444444444333
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.15 Score=47.58 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC--C----CH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCC--hh
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--P----DH-ITFVGVLSACSRGGLFDEGRMFFESMVRDY-HIDPS--VQ 278 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p----~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 278 (512)
.+..+...+.+.|++++|+++|++...... + +. ..|...+-++...|++..|...++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 344556677888888888888888765432 2 11 123333445666788888888888875221 22121 34
Q ss_pred HHHHHHHHHhc--cCChHHHHHHHHhCC
Q 043142 279 HYTCMVDLLGH--SGRLDEACDLIMQMR 304 (512)
Q Consensus 279 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 304 (512)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666644 345666777777764
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.072 Score=48.26 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=26.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
..-|.+.|.+..|..-++.+++++.-.| .......++.+|...|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344555555555555555555443322 23344445555555555555554443
No 184
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.29 Score=49.89 Aligned_cols=308 Identities=13% Similarity=0.036 Sum_probs=160.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
..+|.-+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+.+..+-+++. ... .+...|.....-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHHH
Confidence 456677777888888888877764321111 3445555444444422 222223333322 222 3445667777777
Q ss_pred HhCCChHHHHHHHHhhhhCC------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcC-----------CCCchHHHHH
Q 043142 119 AKCSCVVNARQVFDKILERD------PSEATLVTVISASADIAALPQGRELHGFSWRHR-----------FELNVKVKTA 181 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~ 181 (512)
..+|+.+-|.++++.=+... .+...+...+.-+...|+.+...++.-.+...- .+.....|.-
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~ 597 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ 597 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 78999999999876543322 123345566777778888888777766655431 1111122221
Q ss_pred HHH--------HHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCC---hHHH-------HHHHHHhHHC
Q 043142 182 LVD--------MYAKCGLVKVARNLFEQLR-------EKRVVSWNAMITGYAMHGH---STKA-------LDLFEKMKDE 236 (512)
Q Consensus 182 li~--------~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~~ 236 (512)
++. .+.+.++-..+...|..=. +.-+........++++... ..+| +.+.+.+..+
T Consensus 598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0011111111111111000 0001122222333333322 1111 1122222111
Q ss_pred -CC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHH
Q 043142 237 -VQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGA 314 (512)
Q Consensus 237 -~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 314 (512)
+. -...|.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+++-++++ .+.-|.-
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~P 749 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLP 749 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchh
Confidence 22 333344445555666777777777666552 4677777777777777777777777766653 2456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
+..+|.+.|+.++|.+.+-+.-. +.-...+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 77778888888777777655422 11456777777777777766433
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=97.23 E-value=0.0041 Score=51.22 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=76.5
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 282 CMVDLLGHSGRLDEACDLIMQMR-VK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
...--+-..|++++|..+|+-+- .. -+..-|..|..++-..+++++|...|..+..++++||.++......|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567899999999998772 22 34557888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 043142 360 EGVAKLRKLMID 371 (512)
Q Consensus 360 ~~a~~~~~~m~~ 371 (512)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.042 Score=54.59 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHh
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPG 310 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~ 310 (512)
.+..+...+..-+-+...+..|-++|.+|-. ..+++++....+++++|..+-++.| +.||+.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 3555566666666677777888888887731 2357788888889999988888885 445543
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.21 E-value=0.003 Score=61.14 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=94.2
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCC-C-----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQ-R-----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
+......+++......+++++..++-+... | -..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 344455566667777778888888777643 2 1235579999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKC 121 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (512)
+..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888666777776666666655
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.21 E-value=0.011 Score=50.39 Aligned_cols=93 Identities=10% Similarity=0.007 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++..++.. +.....++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 45667777777788888888888888866432221 2356677777778888888888888777653 33345555555
Q ss_pred HHHH-------hCCChHHHHHHH
Q 043142 116 DMYA-------KCSCVVNARQVF 131 (512)
Q Consensus 116 ~~~~-------~~g~~~~A~~~~ 131 (512)
..|. +.|+++.|...+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH
Confidence 5665 556655444333
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.16 E-value=0.05 Score=49.27 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=94.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhCCChHHHHHHHHhhhhCCCChh--HHHHHHHHHhc--c-
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVG---AALIDMYAKCSCVVNARQVFDKILERDPSEA--TLVTVISASAD--I- 154 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~--t~~~ll~~~~~--~- 154 (512)
+...|++++|.+.|+.++..-.. +.... -.+..+|.+.+++++|...|++..+..|+.. .+...+.+.+. .
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34456666666666666554311 12222 2345566677777777777777766665432 22222222221 0
Q ss_pred --------------CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Q 043142 155 --------------AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMH 220 (512)
Q Consensus 155 --------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 220 (512)
.+...+...+ ..+..++.-|-...-..+|...+..+..+=...--.+..-|.+.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAF------------RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHH------------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0111111111 12333444444444455555544444322111222355668888
Q ss_pred CChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 221 GHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
|.+..|+.-|+.+.+.-+ ........+..+|...|..++|......+.
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 999999999999987644 344566778889999999999988777653
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.24 Score=46.70 Aligned_cols=109 Identities=22% Similarity=0.132 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (512)
+.+..|.-+...|+...|..+-.+. .+||..-|-..+.+++..++|++-..+... +-.+..|..+++.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 4455566666777777776665544 257888888888888888888776664321 123466777788888
Q ss_pred ccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
+.|+..+|..++.+++ +..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888877743 13445566777777777665443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.096 Score=43.88 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC---hhHHH
Q 043142 69 LVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS---EATLV 145 (512)
Q Consensus 69 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd---~~t~~ 145 (512)
+.|+...-..|..++.+.|+..+|...|++...--+..|..+.-.+.++....+++..|...++.+-+.+|+ +.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 345555555566667777777777777777665445566666666667777777777777777776665542 23344
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 043142 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARN 197 (512)
Q Consensus 146 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 197 (512)
.+...+...|....|+.-|+.....- |+...-.-...++.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666666666666666543 222222223344555665555443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.0015 Score=46.09 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHG-HVKLAELALEKLIELEP 340 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 340 (512)
...|..+...+.+.|++++|+..|++. ...|+. ..|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777778888888777766 344543 47777888888888 68888888888888776
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.12 E-value=0.01 Score=49.23 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=74.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A 328 (512)
....++.+.+...+..+..-+.-.+ +... ..-.......+++.- ......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777764432111 1111 112222333333321 23566777888899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH-----hCCCccCCc
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI-----DRGIKKSIA 379 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 379 (512)
...+++++..+|-+...|..++.+|...|+..+|.++|+++. +.|+.|++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 999999999999999999999999999999999999999875 357776653
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.094 Score=52.68 Aligned_cols=237 Identities=14% Similarity=0.072 Sum_probs=133.2
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh------hHHH--HH--HHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE------ATLV--TV--ISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~------~t~~--~l--l~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
.|.+..|..|.....+.-.++-|...|-+...-. .. .|.. .+ ...-+--|.+++|+++|-.+-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 5778888877777666666777776665543211 00 0000 00 011122467777777776665543
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLREKR-----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS 249 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 249 (512)
..|.++.+.|++-...++++.-...+ ..+|+.+...++....+++|.+.|..-.. ....+.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHH
Confidence 34667777777777777765433211 25677777777777777777777664321 112444
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-+ .| .+.+..|....++.+|.
T Consensus 831 cly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc-----HHHHHHHHHHHHHHHHH
Confidence 555555555544443333 2245556667778888888888877766654 22 23445566666666666
Q ss_pred HHHHHHHhcC------------CCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 330 LALEKLIELE------------PHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 330 ~~~~~~~~~~------------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
++.++..--. -.+ .-..--|..+.++|+.-+|.+++.+|.++
T Consensus 899 elaq~~~l~qv~tliak~aaqll~~-~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 899 ELAQRFQLPQVQTLIAKQAAQLLAD-ANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHhccchhHHHHHHHHHHHHHhh-cchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 6554421000 000 01123456677777777777777777654
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.015 Score=51.22 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHH-----HHH
Q 043142 79 ALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVI-----SAS 151 (512)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll-----~~~ 151 (512)
++..+--.+.+.-....+..+++...+.++.....|+.+-.+.||.+.|...|+...+.. .|..+++.+. ..+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 333333344444444445555444434444555555555555555555555555443221 1222222211 122
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchHHHH--HHHHHHHhcCCHHHHHHHHHhcCCCC
Q 043142 152 ADIAALPQGRELHGFSWRHRFELNVKVKT--ALVDMYAKCGLVKVARNLFEQLREKR 206 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~m~~~~ 206 (512)
...+++..+...+.++.... +.++...| +|+.+| .|+..+|.++.+.|.+.+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQD 316 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccC
Confidence 23334444444444444332 22333333 344444 477888888888877644
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.10 E-value=0.027 Score=56.89 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=86.9
Q ss_pred CCCCchHHHHHHHHHHhcC-----CchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhcc--------CChHHHHHHHHHH
Q 043142 34 PQRNLFLWNVLIRAYAWNG-----PYEVAIELYYRLLEIGLVPDN-FTFPFALKACSAL--------SAIEEGRRIHEDV 99 (512)
Q Consensus 34 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~--------~~~~~a~~~~~~~ 99 (512)
+..|..+|...+++..... ....|..+|++..+. .|+. ..|..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3457888988888765432 266889999998874 5664 2344333322211 1123333333333
Q ss_pred HHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043142 100 IRN-KWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHR 171 (512)
Q Consensus 100 ~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 171 (512)
... ..+.+..+|.++.-.+...|++++|...|++..+.+|+...|..+...+...|+.++|...+.++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123455677777666667788888888888888888877777777777777888888888777776654
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.014 Score=48.69 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHhHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR-VKP---DPGVWG 313 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~ 313 (512)
|+...-..|..+..+.|+..+|...|++.. . |+-. |......+..+....++..+|...++... ..| ++.+--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 677667778888888888888888888875 2 5433 67777777778888888888888777761 112 222444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+.+.+...|.+..|+..|+.++...|. +..-......+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5667778888888888888888877663 23444455667777877776655554443
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.01 Score=51.13 Aligned_cols=96 Identities=16% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHhc--CCCCchHHHHHHHHHHHc-----CChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcC-------------
Q 043142 196 RNLFEQL--REKRVVSWNAMITGYAMH-----GHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRG------------- 254 (512)
Q Consensus 196 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~------------- 254 (512)
...|+.. ..++..+|..++..|.+. |..+=....++.|.+-|+ -|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 455666666666666543 555666666777777777 7888888888776542
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 043142 255 ---GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 255 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 292 (512)
.+-+-|+.++++| +.+|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 1345577777777 566777777777777777776654
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.93 E-value=0.012 Score=50.66 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHHHHccC--CCCCchHHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-----------
Q 043142 26 AHQLFDRI--PQRNLFLWNVLIRAYAWN-----GPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS----------- 87 (512)
Q Consensus 26 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 87 (512)
-...|++. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 44566665 457888888888888755 667777777888889999999999999998875422
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 88 -----AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 88 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
+-+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 235678888888888888888888888888876654
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.91 E-value=0.17 Score=48.26 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Cc----hHHHHHHHHHHH---cCChHHHHHHHHHhHHCCC-CCHHHHHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREK---RV----VSWNAMITGYAM---HGHSTKALDLFEKMKDEVQ-PDHITFVGVLS 249 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~ 249 (512)
.++-.|-...+++...++.+.+... ++ ..-.....++-+ .|+.++|++++..+..... +++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888754 11 111223345556 7888999999988555444 88888887776
Q ss_pred HHhc---------CCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH----HHHHHH---HhC----C---CC
Q 043142 250 ACSR---------GGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD----EACDLI---MQM----R---VK 306 (512)
Q Consensus 250 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~~ 306 (512)
.|-. ...+++|...|.+.- .+.|+..+---++..+...|.-. +..++- ... + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 234777888887654 55676544333333444444322 222222 111 1 22
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 307 PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.|-.-+.+++.++.-.|+.+.|.+..+++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4555778899999999999999999999999987653
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.0093 Score=54.47 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPDP----GVWGALLNSCKLHGHVKLAELALEKLIELEPHD---AGNYVILSN 351 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 351 (512)
|...+..+.+.|++++|...|+.+ ...|+. ..+-.+...|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555544 112221 233445555556666666666666666555443 333344455
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
.|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666665544
No 202
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.32 Score=46.09 Aligned_cols=252 Identities=12% Similarity=-0.017 Sum_probs=140.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
....+.+...+.+|+..+...++.... +..-|..-...+...++++++.--.++-++.. +-....+.-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 344556666777777777777765422 22334444444455555555543333322221 0011111112222222222
Q ss_pred hHHHHHHHH------------hhhh---CC---CChhHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 124 VVNARQVFD------------KILE---RD---PSEATLVTVISAS-ADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 124 ~~~A~~~~~------------~m~~---~~---pd~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
..+|...|+ .... .+ |.-.++-.+-.-| ...++.++|.++-..+++..- ...+..+++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhc
Confidence 223322222 1111 11 3334444444433 667888888888777766531 112222222
Q ss_pred --HHHhcCCHHHHHHHHHhcCCCCc---------------hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----CCHHH
Q 043142 185 --MYAKCGLVKVARNLFEQLREKRV---------------VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----PDHIT 243 (512)
Q Consensus 185 --~y~~~g~~~~A~~~~~~m~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p~~~t 243 (512)
++--.++.+.|...|++...-|+ ..|..-..-..++|++.+|.+.|.+.+...+ |+...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 23346788888888888765443 2233344556788999999999999876544 66667
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
|.....+..+.|+.++|+.--+... .++|. +..|..-..++.-.++|++|.+.+++.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999998877765 34442 233334444555667888888888766
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.15 Score=44.80 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWE--TDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+...|++.+|.+.|+.+...-.. --....-.++.+|.+.|+++.|...|++.....|+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 344556666666666666554211 11222333455555666666666666665555544
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.032 Score=43.99 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=60.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPD---HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
+..++-..|+.++|+.+|++....|.++ ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4456777888888888888888877622 34566677788888888888888888875531111 2222233344667
Q ss_pred ccCChHHHHHHHHh
Q 043142 289 HSGRLDEACDLIMQ 302 (512)
Q Consensus 289 ~~g~~~~A~~~~~~ 302 (512)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776644
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.42 Score=44.97 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=42.0
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNF--TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|.+.-+..-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 46666666666666541 1111 11222222345566666665555544332 223445566666666666666666
Q ss_pred HHHHhhh
Q 043142 129 QVFDKIL 135 (512)
Q Consensus 129 ~~~~~m~ 135 (512)
++.+.-.
T Consensus 209 kLvd~~~ 215 (531)
T COG3898 209 KLVDAQR 215 (531)
T ss_pred HHHHHHH
Confidence 6666544
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.85 E-value=0.024 Score=43.25 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCCCCChhHH
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGG--------LFDEGRMFFESMVRDYHIDPSVQHY 280 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 280 (512)
...|..+...+++.....+|+.++..++ |+..+|+.++.+..+.. .+-+.+.+|+.|+.. +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3445556666888888888888888877 88888888888776532 244566777888744 788888888
Q ss_pred HHHHHHHhc
Q 043142 281 TCMVDLLGH 289 (512)
Q Consensus 281 ~~li~~~~~ 289 (512)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 207
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.85 E-value=0.00082 Score=39.58 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
|+++++++|+++.+|..|..+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.84 E-value=0.038 Score=43.62 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=30.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETD--VFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
++-..|+.++|..+|+..+..|+..+ ...+-.+...|...|++++|..+|++.....|+
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34445555555555555555554332 123333445555556666666666555554443
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.77 Score=46.55 Aligned_cols=114 Identities=20% Similarity=0.118 Sum_probs=55.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCC-CCchH------------HHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQ-RNLFL------------WNVLIRAYAWNGPYEVAIELYYRLLEIGLVP 71 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 71 (512)
|.+-.|..|...-.+.-.++-|+..|-+... +.+.. -.+=|.+ --|++++|.++|-+|-++++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh--
Confidence 5556666666655555566666666655432 11111 0111122 23777777777777654322
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CC-C---hhHHHHHHHHHHhCCChHHHHHHHHh
Q 043142 72 DNFTFPFALKACSALSAIEEGRRIHEDVIRNKW-ET-D---VFVGAALIDMYAKCSCVVNARQVFDK 133 (512)
Q Consensus 72 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~ 133 (512)
.+....+.|++-.+.++++ .|- .. | ...++.+...++....|++|.+.+..
T Consensus 766 -------Aielr~klgDwfrV~qL~r----~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIR----NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHH----ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333445555554444432 211 11 1 23455555555555556666555544
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.028 Score=50.98 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS---ALSAIEEGRRIHEDVIRNKWETDVFVGAA 113 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (512)
|...|-.|...|...|++..|..-|.+..+.. .+|...+..+..++. ....-.++..+++++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 45556666666666666666666666654421 112223333333322 1223345556666665554 334444444
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
|...+...|++.+|...|+.|....|....+..++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 55555566666666666666655555444444443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.0098 Score=42.37 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=37.1
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
.+.+.++++.|.++++.+++.. |.+...+.....+|.+.|++++|...|+...+.+|+..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4455566666666666666654 345555666666666666666666666666666655433
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.72 E-value=0.0035 Score=39.54 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
.+|..+...|...|++++|+++++++++..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999888777653
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.057 Score=49.40 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLN 317 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 317 (512)
|...+....+.|++++|...|+.+++.+.-.+ ....+.-+...|...|++++|...|+.+ ...|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444334556777777777777775531111 1245666777777788888887777776 11222 234555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 67788899999999999888888764
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.62 E-value=0.01 Score=57.07 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG----VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++..++ .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4556666666677777777777776664 4555533 4666666777777777777777777665321 121111
Q ss_pred H--HHHhccChhHHHHHHHHHHhCCC
Q 043142 351 N--IYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 351 ~--~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
. .+....+..+..++++.....|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122333455566666665554
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.22 Score=49.77 Aligned_cols=258 Identities=13% Similarity=0.022 Sum_probs=133.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHH
Q 043142 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISA 150 (512)
Q Consensus 71 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~ 150 (512)
|....+.+-+..+...|.+++|.++-. +.....-|..|.......=+++-|++.+.+.....
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~------------ 615 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDLR------------ 615 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH------------
Confidence 333344444455566666666655422 11222334445444444455555555555543221
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--chHHHH-----HHHHHHHcCCh
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR--VVSWNA-----MITGYAMHGHS 223 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~-----li~~~~~~g~~ 223 (512)
+-+...-++.+.++|-.|+... +.+.++-.|++.+|-++|.+--..+ ...|+- ..+-|...|..
T Consensus 616 ------~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~ 686 (1081)
T KOG1538|consen 616 ------YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDP 686 (1081)
T ss_pred ------HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 1122233456667776676543 4455666788888888886543222 122221 12234444444
Q ss_pred HHHHHHHHHhHHC--CC--CCHHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHhcCCCC---ChhHHHHHHHHHhccC
Q 043142 224 TKALDLFEKMKDE--VQ--PDHITFVGVLSACSRGGLFDEGRMFFE-----SMVRDYHIDP---SVQHYTCMVDLLGHSG 291 (512)
Q Consensus 224 ~~A~~~~~~m~~~--~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~p---~~~~~~~li~~~~~~g 291 (512)
++-..+.++-.+. .+ |- +....+..+|+.++|..+.. .|.-+-+-+. +..+...+..-+-+..
T Consensus 687 ~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~ 761 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLD 761 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcc
Confidence 4444443332111 11 22 12233445677777766532 1111111111 2334444444455556
Q ss_pred ChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 292 RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 292 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.+.-|-++|++|+-. .+++......+++.+|..+.++..+.-| ..|..-..-++...++++|.+.|.+.
T Consensus 762 ~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 666677777777622 2455566677788888877776666555 35556667778888888888888654
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.044 Score=43.69 Aligned_cols=96 Identities=8% Similarity=0.144 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHC-CC-CCHHHHHHHHHHHhc
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQ-PDHITFVGVLSACSR 253 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-p~~~t~~~ll~a~~~ 253 (512)
..++.+++.++++.|+++....+.+..-.-|+.. -...+. .... .. |+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~----------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD----------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc----------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 4566677777777777777777776543222110 000000 2222 33 888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (512)
.+++..|.++.+.+.+.++++-+..+|..|+.-..
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88999999888888888887767778877776443
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.29 E-value=0.047 Score=43.51 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSC 319 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 319 (512)
|..++..++.++++.|+++....+.+.. .|+.++...- .+. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4567778888888888888888777654 3655432110 000 111114556666777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELE--PHDAGNYVILSNIY 353 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 353 (512)
...+++..|.++.+...+.- |-...+|..|++=.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777776666543 22344555555433
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.78 Score=40.87 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHH-hccCC-hHH-HHHHHHHHHHc-CCCCchHHHHHHH
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISAS-ADIAA-LPQ-GRELHGFSWRH-RFELNVKVKTALV 183 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~-~~~~~-~~~-a~~~~~~~~~~-g~~~~~~~~~~li 183 (512)
..|+.-+..+.+....++|..-+....+.+ ||- -|...-..+ .+.|. ..- .+.+|..+.+. |. -+++|.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqesLd 143 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQESLD 143 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHHHH
Confidence 455666777788888888776666555544 110 010000001 11222 111 22333333332 21 245555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCc--------hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHh
Q 043142 184 DMYAKCGLVKVARNLFEQLRE--KRV--------VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACS 252 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~ 252 (512)
..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++.++..+ .++.....|.+.-.
T Consensus 144 Rl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 144 RLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 555544444444444433222 112 2334555666666777777777777777665 66666777777777
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChhHHHH-----HHHHHhccCChHHHHHHHHhCCC-CC-CHhHHHHHHHHHHHcCCH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDPSVQHYTC-----MVDLLGHSGRLDEACDLIMQMRV-KP-DPGVWGALLNSCKLHGHV 325 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~ 325 (512)
+.|+.+.|..+|+...+..+ +.+....+. ....|.-++++.+|...+.++.. .| |....|.-.-+..-.|+.
T Consensus 224 Q~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 77888888877776643322 222222222 22234444555555555555521 11 222222222222334555
Q ss_pred HHHHHHHHHHHhcCCC
Q 043142 326 KLAELALEKLIELEPH 341 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~ 341 (512)
..|.+..+.+++..|.
T Consensus 303 ~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHhccCCc
Confidence 6666666666665554
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.20 E-value=0.0058 Score=44.26 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIEL----EPH---DAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
+++.+...|...|++++|+..++++++. ++. ...++..++..|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777788888888888888887754 221 24567778888888888888888887754
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.17 E-value=0.36 Score=42.49 Aligned_cols=60 Identities=20% Similarity=0.079 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRN 102 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 102 (512)
.....+.+.|++.+|.+.|+.+...-.... ....-.+..++-+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455566777777777776665421100 123344555666667777777777666655
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.09 E-value=0.75 Score=44.97 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHh--HHHHHHHHHHHc
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR-V-KPDPG--VWGALLNSCKLH 322 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~--~~~~ll~~~~~~ 322 (512)
+..++.+.|+.++|.+.++++.++............|+..|...+.+.++..++.+.. + -|... .|+..+-..+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 4444445555555555555554332211123344445555555555555555555442 1 12222 343333232222
Q ss_pred CC---------------HHHHHHHHHHHHhcCCCCC
Q 043142 323 GH---------------VKLAELALEKLIELEPHDA 343 (512)
Q Consensus 323 g~---------------~~~A~~~~~~~~~~~p~~~ 343 (512)
++ -..|.+++.++.+.+|..+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1346678888888877654
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.06 E-value=0.012 Score=42.64 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-------C-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-------R-VKPD-PGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555666666555555544 1 1122 33666777777777777777777777665
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.99 E-value=1.5 Score=41.53 Aligned_cols=302 Identities=17% Similarity=0.133 Sum_probs=187.0
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhCCChHHHH
Q 043142 53 PYEVAIELYYRLLEIGLVPDNFTFPFALKAC--SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM--YAKCSCVVNAR 128 (512)
Q Consensus 53 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~ 128 (512)
.+..+...|..-+.. ..|..|-.++ +-.|+-..|.+.-.+..+. +..|..-.-.|+.+ -.-.|++++|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 345566666665432 1244444333 3456777777766544322 23333333333332 23468999999
Q ss_pred HHHHhhhhCCCCh--hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 043142 129 QVFDKILERDPSE--ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR--- 203 (512)
Q Consensus 129 ~~~~~m~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--- 203 (512)
+-|+.|... |.. .-+..|.-..-+.|+.+.|++.-+..-... +.-...+.+.+...+..|+|+.|+++.+.-.
T Consensus 141 ~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 141 KKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999998753 221 123334444456788888888777766543 2334577788999999999999999998654
Q ss_pred --CCCch--HHHHHHHHHHH---cCChHHHHHHHHHhHHCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 043142 204 --EKRVV--SWNAMITGYAM---HGHSTKALDLFEKMKDEVQPDHIT-FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP 275 (512)
Q Consensus 204 --~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 275 (512)
++++. .-..|+.+-+. .-+...|...-.+..+.. ||.+. -..-..++.+.|++.++-.+++.+.+. .|
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~-pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---eP 294 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA-PDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EP 294 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CC
Confidence 44431 22233332221 234555665555444332 44332 223456788999999999999999743 67
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
.+..+...+ +.+.|+.. ++=+++. .++||. .+-..+..+-...|++..|..-.+.+....|.. +.|..|.
T Consensus 295 HP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlA 369 (531)
T COG3898 295 HPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLA 369 (531)
T ss_pred ChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHH
Confidence 666554433 45666533 3323222 245554 477778888889999999999998888888865 5888888
Q ss_pred HHHHh-ccChhHHHHHHHHHHhC
Q 043142 351 NIYAR-AANWEGVAKLRKLMIDR 372 (512)
Q Consensus 351 ~~~~~-~g~~~~a~~~~~~m~~~ 372 (512)
+.-.. .|+-.++.+.+-+-.+.
T Consensus 370 dIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhcC
Confidence 87754 49999988888776554
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=2.4 Score=43.60 Aligned_cols=303 Identities=14% Similarity=0.014 Sum_probs=169.7
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCCc--hHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGPY--EVAIELYYRLLEIGLVPDNFTFPFALKACSAL 86 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 86 (512)
.+++-+...+.+..|+++-..+..|. ...|.....-+.+..+. +++++..++=...... ...+|..+.+-....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhc
Confidence 45666777788888888888777664 34455555555555322 2344433332222122 345677777777778
Q ss_pred CChHHHHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC------------CChh-HHHHHHH
Q 043142 87 SAIEEGRRIHEDVIRNKWE----TDVFVGAALIDMYAKCSCVVNARQVFDKILERD------------PSEA-TLVTVIS 149 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------pd~~-t~~~ll~ 149 (512)
|+.+.|..+.+.=...+.. .+..-+...+.-..+.|+.+-...++-.+...- |... .|.-++.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888887776532111100 111223344445556666666665555443321 2211 1222211
Q ss_pred ---------HHhccCChHHHHHHHHHH---H--HcCCCCchHHHHHHHHHHHhcCCHHHHHHH----------HHhcCC-
Q 043142 150 ---------ASADIAALPQGRELHGFS---W--RHRFELNVKVKTALVDMYAKCGLVKVARNL----------FEQLRE- 204 (512)
Q Consensus 150 ---------~~~~~~~~~~a~~~~~~~---~--~~g~~~~~~~~~~li~~y~~~g~~~~A~~~----------~~~m~~- 204 (512)
.+-+..+......++-+- . ..|..|+ .....+.+++.....-..+. ++.+..
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222221111 0 1123333 33344555555442222222 222221
Q ss_pred CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHH
Q 043142 205 KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHY 280 (512)
Q Consensus 205 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 280 (512)
.+ -.+.+--+.-+...|+..+|.++-.+.+ +||..-|-.=+.+++..+++++-+++-+... .+.-|
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy 747 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGY 747 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCc
Confidence 11 1345555666778899889988776553 5999999888999999999998777655442 14567
Q ss_pred HHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
.-.+..+.+.|+.++|.+++.+.+-.+ -...+|.+.|++.+|.++.-+
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 778899999999999999998875222 466778888888888776544
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.83 E-value=1.2 Score=39.26 Aligned_cols=191 Identities=20% Similarity=0.191 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH-HH
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE-----KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS-AC 251 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~-a~ 251 (512)
........+...+++..+...+..... .....+......+...+....+...+.........+......... ++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 333444444444444444444444321 112333334444444444555555555554433311111111112 45
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC--HhHHHHHHHHHHHcCC
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD--PGVWGALLNSCKLHGH 324 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~ 324 (512)
...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 141 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 141 YELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 555555555555555532 122 2222333333344555666666665555 22222 3455555666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
++.|...+.......|.....+..+...+...+.++++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665334444444555555556666666655544
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.11 Score=49.23 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..++..|..++.+.+++..|++...+.++.+|+|.....--..+|...|+++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 44677888889999999999999999999999999999999999999999999999999997643
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.75 E-value=0.099 Score=43.21 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HhcCCCCChhH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV----RDYHIDPSVQH 279 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 279 (512)
...++..+...|++++|+.+.+.+....+-|...+..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566667777777777777777766777777777777777777777777766553 23466666544
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.74 E-value=0.046 Score=51.39 Aligned_cols=257 Identities=11% Similarity=0.037 Sum_probs=172.6
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh-----hHHHHHHHHHhccCChHHHHHHHHHHH--Hc--CC-CCchHHHHHHHHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE-----ATLVTVISASADIAALPQGRELHGFSW--RH--RF-ELNVKVKTALVDM 185 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~-~~~~~~~~~li~~ 185 (512)
.-++|.|+......+|+...+.+.+. ..|..|.++|.-.+++++|.+.|..=+ .. |- .-.......|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35789999999999999998877432 357777888888999999999875322 11 10 1112223344555
Q ss_pred HHhcCCHHHHHHHHHhcC----CC-----CchHHHHHHHHHHHcCC--------------------hHHHHHHHHHh---
Q 043142 186 YAKCGLVKVARNLFEQLR----EK-----RVVSWNAMITGYAMHGH--------------------STKALDLFEKM--- 233 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~----~~-----~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 233 (512)
+--.|.+++|.-.-.+-. +- ....+-.+...|...|+ ++.|.++|.+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677888765432211 11 12455557778876543 12233344332
Q ss_pred -HHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC---
Q 043142 234 -KDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESM---VRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM--- 303 (512)
Q Consensus 234 -~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 303 (512)
.+.|- .....|..|...|.-.|+++.|+..++.- .+++|-+. ....++.|..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11121 23345666666677788999999877643 23444333 4567788888999999999999988765
Q ss_pred ----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 304 ----R-VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH------DAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 304 ----~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+ ......+.-+|...|....+++.|+..+.+-+.+... ...++.+|.++|...|..++|+.+.+.-.+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 1123346667888888889999999999999998832 4568899999999999999999999888753
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.71 E-value=1.3 Score=42.41 Aligned_cols=100 Identities=18% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCC--CCCcc-hHHHHHHHHhc---cCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLEIGL--VPDNF-TFPFALKACSA---LSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~-t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
.++-+|-...+++..+++.+.|..... .++.. .-....-|+.+ .|+.++|++++..++...-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 455568888888888888888866411 11111 11112234445 7888889888888666555777778777776
Q ss_pred HHHh---------CCChHHHHHHHHhhhhCCCChh
Q 043142 117 MYAK---------CSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 117 ~~~~---------~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
.|-. ....+.|+..|.+.-+.+||..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 6532 1235677777777666665543
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.67 E-value=0.4 Score=38.74 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=28.7
Q ss_pred HHHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMVRD 270 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 270 (512)
..+.|++++|.+.|+.+...-+ -....-..++.++.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445556666666665555433 12233444555555666666666666555543
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.1 Score=46.87 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCchHHH
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-------RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH---DAGNYVI 348 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 348 (512)
.|+.-++.| +.|++.+|...|... ...|+...| |..++...|+++.|...|..+.+..|. -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444333 344566666655554 133444444 666777777777777777777765544 3455666
Q ss_pred HHHHHHhccChhHHHHHHHHHHhC
Q 043142 349 LSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|.....+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666677777777777777776654
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=1 Score=36.81 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccC
Q 043142 76 FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIA 155 (512)
Q Consensus 76 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~ 155 (512)
...++..+...+.......+++.+++.+ ..+....|.++..|++.. .+.....+.. .++......++..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHHHHcC
Confidence 4455666666666777777777777665 356667777777777653 2333444442 123344555666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHhcCCCCchHHHHHHHHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC-GLVKVARNLFEQLREKRVVSWNAMITGY 217 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~ 217 (512)
-++++..++..+.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 55555555544321 11222223333 5566666655542 2334555555444
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=1.6 Score=38.63 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-------CCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCch
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQMR-------VKPDPG-VWGALLNSCKLHGHVKLAELALEKLIEL----EPHDAGN 345 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~ 345 (512)
..+......|.+..++++|-..|.+-+ --|+.. .+-+.|-.+.-..|+..|++.++.--+. +|.+..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 344555566777777877766655441 123332 4555555666677899999999886654 3667778
Q ss_pred HHHHHHHHHhccChhHHHHHH
Q 043142 346 YVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~ 366 (512)
...|+.+| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 88888887 467777766654
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.95 Score=35.80 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred ccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 289 HSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
.+|++......+-.++ .+.......+.....+|+-+.-.++++.+.+.+..+|....-+..+|.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3555555555555543 24445667788888999999999999999876667788999999999999999999999999
Q ss_pred HHhCCCc
Q 043142 369 MIDRGIK 375 (512)
Q Consensus 369 m~~~g~~ 375 (512)
.-++|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 9999985
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.33 Score=46.06 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
.++.-|.-.|.+.+++.+|+..-++. ... +|....-.=..++...|+++.|+..|+++++.+|.|-.+-..|+..-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45666777888999999998887766 333 4555555667889999999999999999999999998888888888777
Q ss_pred ccChhHH-HHHHHHHHhC
Q 043142 356 AANWEGV-AKLRKLMIDR 372 (512)
Q Consensus 356 ~g~~~~a-~~~~~~m~~~ 372 (512)
..+..+. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766655 7888888754
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.41 E-value=2.8 Score=40.59 Aligned_cols=355 Identities=13% Similarity=0.079 Sum_probs=176.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCC-CchHHHHHHHHH--HhcCCchHHHHHHHHHHHC--CCCCC-----------
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQR-NLFLWNVLIRAY--AWNGPYEVAIELYYRLLEI--GLVPD----------- 72 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~----------- 72 (512)
..+.++++|-.. +++..........+. .-..|-.+..++ -+.+.+.+|++.+..-... +-.|.
T Consensus 48 l~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 48 LGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 456677777643 444444444333221 123344444433 4678888888887766543 22221
Q ss_pred -cchHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CChhHHHHHHHHHHhCC--------C-------hHHHHHHHH
Q 043142 73 -NFTFPFALKACSALSAIEEGRRIHEDVIRNKWE----TDVFVGAALIDMYAKCS--------C-------VVNARQVFD 132 (512)
Q Consensus 73 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g--------~-------~~~A~~~~~ 132 (512)
-.-=+..+..+...|++.+|+.++++++..=++ -+..+||.++-++++.= . ++.+.-...
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 111133455677889999998888887765444 67788888776666531 1 122222222
Q ss_pred hhhhCC--------CChhHHHH--------------------------------------HHHHHhccCChHHHHHHHHH
Q 043142 133 KILERD--------PSEATLVT--------------------------------------VISASADIAALPQGRELHGF 166 (512)
Q Consensus 133 ~m~~~~--------pd~~t~~~--------------------------------------ll~~~~~~~~~~~a~~~~~~ 166 (512)
+|...+ |...-+.. +...... +.+.+..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 222221 11111111 1111111 33333333322
Q ss_pred HHHcCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCc-------hHHHHHHHHHHH----cCChHHHHHH
Q 043142 167 SWRHRFEL----NVKVKTALVDMYAKCGLVKVARNLFEQLR--EKRV-------VSWNAMITGYAM----HGHSTKALDL 229 (512)
Q Consensus 167 ~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~-------~~~~~li~~~~~----~g~~~~A~~~ 229 (512)
+....+.+ =..++..++....+.++...|.+.+.-+. +|+. .+-.++-+..+. .-+..+=+.+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22221100 12234445555555666666665555433 2221 011111111221 1122233444
Q ss_pred HHHhHHCCCCCHHHHHHH---HHHHhcCCC-HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH----Hhcc---CC---hH
Q 043142 230 FEKMKDEVQPDHITFVGV---LSACSRGGL-FDEGRMFFESMVRDYHIDP-SVQHYTCMVDL----LGHS---GR---LD 294 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~l---l~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~----~~~~---g~---~~ 294 (512)
+++.....+......--| ..-+-+.|. -+.|..+++.+. .+.| |..+-|..... |.++ .. +-
T Consensus 365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444443333111111112 222344454 677888888776 3455 44433333221 2111 11 12
Q ss_pred HHHHHHHhCCCCCCH----hHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 295 EACDLIMQMRVKPDP----GVWGALLNS--CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 295 ~A~~~~~~m~~~p~~----~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
+-..++++.++.|-. ..-|.|..| +..+|++.++.-.-.-+.+..| ++.+|..++-......++++|..++..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 223344555554432 244555544 5678999999888888888888 888999999999999999999999987
Q ss_pred HH
Q 043142 369 MI 370 (512)
Q Consensus 369 m~ 370 (512)
+.
T Consensus 521 LP 522 (549)
T PF07079_consen 521 LP 522 (549)
T ss_pred CC
Confidence 63
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.35 E-value=3.5 Score=41.39 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=123.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH-
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS- 249 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~- 249 (512)
++..+|..-++.-.+.|+.+.+.-.|++..-+- ...|--.+.-....|+.+-|-.++....+-..|+....-.+-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 345678888888889999999999999876553 2445555555555588888887777665544433332222222
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH---HHHHhC-CCCCCHhHHHHHHHH-----H
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEAC---DLIMQM-RVKPDPGVWGALLNS-----C 319 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~-----~ 319 (512)
-+-..|+++.|..+++.+.+++ |+ +..-..-+....+.|..+.+. .++... +.+-+..+...+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 3445789999999999997653 64 344445566778888888887 444443 222233333333322 3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999999998877665
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.34 E-value=0.41 Score=47.42 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=93.1
Q ss_pred ccCChHHHHHHHc--cCC-CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 043142 19 ACDCLHNAHQLFD--RIP-QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRI 95 (512)
Q Consensus 19 ~~g~~~~A~~~f~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 95 (512)
-.|+++++.+... ++. .-...-.+.+++-+-+.|.++.|+++-..-. .-.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 4677888544433 111 1123457788888888898888888754321 123345567888888776
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELN 175 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 175 (512)
-.. .++...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++-......|
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 543 34677899999999999999999998888643 4556666667777777777766666655
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
-+|....++.-.|++++..+++.+.
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2444455555567777776666443
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.25 E-value=0.25 Score=38.85 Aligned_cols=89 Identities=21% Similarity=0.233 Sum_probs=67.0
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---CchHHHHHHHHHhccCh
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELE-PHD---AGNYVILSNIYARAANW 359 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 359 (512)
+++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++. |.. ..+|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788888888888766 3333 45578888888888888888888888888865 332 23566677778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
+.|+.=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888877764
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=95.20 E-value=0.97 Score=44.06 Aligned_cols=155 Identities=13% Similarity=0.128 Sum_probs=95.5
Q ss_pred hHH--HHHHHHHHHcC-----ChHHHHHHHHHhHHCCC--CC-HHHHHHHHHHHhc---------CCCHHHHHHHHHHHH
Q 043142 208 VSW--NAMITGYAMHG-----HSTKALDLFEKMKDEVQ--PD-HITFVGVLSACSR---------GGLFDEGRMFFESMV 268 (512)
Q Consensus 208 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~~~~--p~-~~t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 268 (512)
..| ...+.+..... ..+.|+.+|.+...... |+ ...|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655421 24578888998873322 33 4444444333321 233455666666665
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
.+.| |......+..++.-.|+++.|..+|++. .+.||.. +|....-.+.-.|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3455 6667777777777777888888888887 4667654 66555566667888888888888888888864332
Q ss_pred --HHHHHHHHHhccChhHHHHHH
Q 043142 346 --YVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 346 --~~~l~~~~~~~g~~~~a~~~~ 366 (512)
....++.|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 223344555443 44555554
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.14 E-value=0.28 Score=47.62 Aligned_cols=66 Identities=14% Similarity=-0.003 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh----HHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA----TLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+.+...++.+..+|.+.|++++|+..|++..+.+|+.. +|..+..+|...|+.++|.+.++.+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556677777777777888888888877777777643 4677777777777777777777777664
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=95.12 E-value=0.42 Score=39.63 Aligned_cols=81 Identities=15% Similarity=-0.006 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 188 KCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
..|++++|..+|.-+.- .+..-|..|...+-..+++++|+..|...-...+-|+..+--...++...|+.+.|+..|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 34455555544444332 122333444444444444444444444433332222222233334444444444444444
Q ss_pred HHHH
Q 043142 265 ESMV 268 (512)
Q Consensus 265 ~~~~ 268 (512)
...+
T Consensus 129 ~~a~ 132 (165)
T PRK15331 129 ELVN 132 (165)
T ss_pred HHHH
Confidence 4443
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=2.6 Score=38.53 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=78.3
Q ss_pred HHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 043142 216 GYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDE 295 (512)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 295 (512)
.....|+..+|..+|+...+..+-+......+..++...|+.+.|..++..+-.+.. .........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCCC
Confidence 445667777777777777666554444555666777777777777777776532210 0111111223444555555554
Q ss_pred HHHHHHhCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcc
Q 043142 296 ACDLIMQMRVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELE--PHDAGNYVILSNIYARAA 357 (512)
Q Consensus 296 A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 357 (512)
...+-++..-.| |...--.+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.--|
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443345 33344555666666777777766666665543 334455556666665555
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.10 E-value=2 Score=38.41 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV 277 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 277 (512)
|-.=+..-.+.|++++|.+.|+.+....+ -...+...++.++-+.+++++|....++.++.++-.||+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 33334445677888888888888887765 234566667778888888888888888888777666654
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.6 Score=35.52 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 043142 182 LVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m 202 (512)
++..+.+.+........++.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~ 33 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESA 33 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHH
Confidence 334444444444444444443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=2.9 Score=38.25 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=66.4
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh--HHHHHHHHHhccCChHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA--TLVTVISASADIAALPQ 159 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~--t~~~ll~~~~~~~~~~~ 159 (512)
.....+++..|..++....... +-+...--.|..+|...|+.+.|..++..++....+.. ....-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777777664 33445556677778888888888888887765543221 11122233333333333
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
...+.+..-.. +.|...-..|...|...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333221 22455555566666666666666655554443
No 247
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.95 E-value=2.2 Score=37.04 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..||-+.--+...|+++.|.+.|+...+..+....+...=.-++--.|++..|.+=+...-+.-.-+|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH--
Confidence 455555555666666666666666665555533333222222334456666665544444332112222222222221
Q ss_pred hccCChHHHHHH-HHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhccCh
Q 043142 288 GHSGRLDEACDL-IMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD-------AGNYVILSNIYARAANW 359 (512)
Q Consensus 288 ~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~ 359 (512)
+.-+..+|..- .++.. ..|..-|..-|-.+.--.-.+ +.+++++.....++ ..+|..|..-|...|+.
T Consensus 178 -~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~ 253 (297)
T COG4785 178 -QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL 253 (297)
T ss_pred -hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH
Confidence 22234444332 23332 334445554444432211111 22333333322222 45888899999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
++|..+|+.....++
T Consensus 254 ~~A~~LfKLaiannV 268 (297)
T COG4785 254 DEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999998776554
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.92 E-value=0.47 Score=46.98 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=70.0
Q ss_pred HHcCChHHHHHHHHHhH-HCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 043142 218 AMHGHSTKALDLFEKMK-DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~-~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 296 (512)
.-.++++++.++...-. -..+| ..-...++.-+.+.|..+.|+++-..-.. -.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHH
Confidence 34566666555554111 11113 33456666666677777777665433221 23445667777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 297 CDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 297 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.++.++.. +...|..|......+|+++.|++.|++. .-+..|+-.|.-.|+.+.-.++.+....+|
T Consensus 338 ~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 338 LEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 76665543 5567777777777777777777777765 244556666667777666666665555544
No 249
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.86 E-value=10 Score=44.63 Aligned_cols=310 Identities=15% Similarity=0.112 Sum_probs=175.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHH----HHCCCCCCcchHHHHH-HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 43 VLIRAYAWNGPYEVAIELYYRL----LEIGLVPDNFTFPFAL-KACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
.+..+-.+.+.+..|+..++.- .+.. -...+..++ ..|+..++++....+..... .+..+++ .|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~---~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE---TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH---HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHH
Confidence 4444556778888999998883 2211 112344444 48999999998887766421 2333333 4445
Q ss_pred HHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHhcCCHHHH
Q 043142 118 YAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT-ALVDMYAKCGLVKVA 195 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A 195 (512)
....|++..|...|+++.+.+|+ ..+++.++......+.++...-..+...... .+....++ .=+.+--+.++++..
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 67789999999999999999987 5678888887777777777666544444332 23333333 334455677788777
Q ss_pred HHHHHhcCCCCchHHHHH--HHHHHHcCC--hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHH--------
Q 043142 196 RNLFEQLREKRVVSWNAM--ITGYAMHGH--STKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMF-------- 263 (512)
Q Consensus 196 ~~~~~~m~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~-------- 263 (512)
..... .++..+|.+. +..+.+..+ .-.-.+..+.+++.-+ .=+.+|+..|.+..+..+
T Consensus 1538 e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i-------~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1538 ESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVI-------ENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhh-------hhHHHhhccchHHHHHHHHHHHHHHH
Confidence 76665 5566666655 222222221 1112233333332211 011122222221111111
Q ss_pred --HHHHHHhcCCCCChhH------HHHHHHHHhccCChHHHHHHHHhC----CCCC----C-HhHHHHHHHHHHHcCCHH
Q 043142 264 --FESMVRDYHIDPSVQH------YTCMVDLLGHSGRLDEACDLIMQM----RVKP----D-PGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 264 --~~~~~~~~~~~p~~~~------~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~-~~~~~~ll~~~~~~g~~~ 326 (512)
-.......++.++..+ |-.-+..-....+..+-+--+++. ..+| . ..+|-...+..+..|.++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111111233332211 111111111111122211112211 1122 2 338999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
.|....-.+.+..++ ..+.-.+......|+...|+.+++...+...
T Consensus 1688 ~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999999888887753 5788888999999999999999999886544
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.84 E-value=0.86 Score=36.88 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=34.5
Q ss_pred HhccCChHHHHHHHHhC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 287 LGHSGRLDEACDLIMQM----RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
..+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34556666666666665 2222 122445566667777777777777777777776644
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.70 E-value=0.57 Score=43.66 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=23.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhccChhHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELE--PHD----AGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
-+++..|....|.+..+++.++. ..| ......+.++|-..|+.+.|..-++
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 34455555555555555554431 111 2223345555555555555544443
No 252
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.63 E-value=4.7 Score=39.14 Aligned_cols=334 Identities=12% Similarity=0.088 Sum_probs=187.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCC--------CCchHHHHHHHHHHhc--------CCchHHHHHH-------
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQ--------RNLFLWNVLIRAYAWN--------GPYEVAIELY------- 61 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~--------g~~~~A~~~~------- 61 (512)
+|...-+..+..+.+.|++.+++.++++|.+ -|+.+||.++-.+.+. ...+-+.+.|
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~ 205 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL 205 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 3455667788888999999999999888753 3788888755444332 1122222222
Q ss_pred HHHHHC------CCCCCcchHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 62 YRLLEI------GLVPDNFTFPFALKACSAL--SAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 62 ~~m~~~------g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
.+|... .+.|....+..++.-..-. ..+.--.+++..-...-+.|+ ..+...|+.-+.+ +.+++..+.+
T Consensus 206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce 283 (549)
T PF07079_consen 206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE 283 (549)
T ss_pred HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence 222211 2334443344444332221 112222333333333333444 3344455555555 5555555555
Q ss_pred hhhhCC------CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH-------HHHHHHHh----cCCHHHH
Q 043142 133 KILERD------PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT-------ALVDMYAK----CGLVKVA 195 (512)
Q Consensus 133 ~m~~~~------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~y~~----~g~~~~A 195 (512)
.+.... --..+|..++..+.+.++...|.+.+..+.-. .|+..+.. +|.++.+. .-++.+=
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 443322 12357889999999999999999998877654 34433322 22333321 1122333
Q ss_pred HHHHHhcCCCCc-----hHHHH-HHHHHHHcCC-hHHHHHHHHHhHHCCCCCHHHHHHHH----HHHhc---CCCHHHHH
Q 043142 196 RNLFEQLREKRV-----VSWNA-MITGYAMHGH-STKALDLFEKMKDEVQPDHITFVGVL----SACSR---GGLFDEGR 261 (512)
Q Consensus 196 ~~~~~~m~~~~~-----~~~~~-li~~~~~~g~-~~~A~~~~~~m~~~~~p~~~t~~~ll----~a~~~---~g~~~~a~ 261 (512)
..+++.....|+ +.|-. -..-+-+.|. -++|+++++...+--.-|...-+.+. .+|.+ ...+.+-.
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555555553 23322 2234566666 78999999988765444444333332 23322 23344444
Q ss_pred HHHHHHHHhcCCCC----ChhHHHHHHHH--HhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDP----SVQHYTCMVDL--LGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 262 ~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
.+-+-+ ++-|+.| +...-|.|.++ +...|++.++.-.-.-. .+.|++.+|..+.-+...+.++++|-.++..
T Consensus 442 kLe~fi-~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFI-TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHH-HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 444434 5668888 34556666554 45678888876543333 5789999999999999999999999998876
Q ss_pred HHhcCCCCCchHH
Q 043142 335 LIELEPHDAGNYV 347 (512)
Q Consensus 335 ~~~~~p~~~~~~~ 347 (512)
+ |++..++.
T Consensus 521 L----P~n~~~~d 529 (549)
T PF07079_consen 521 L----PPNERMRD 529 (549)
T ss_pred C----CCchhhHH
Confidence 5 44444444
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.61 E-value=0.35 Score=43.44 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHHHHHhcC--CCCchHHHHHHHHHHHc-----CChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCC-----------
Q 043142 195 ARNLFEQLR--EKRVVSWNAMITGYAMH-----GHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGG----------- 255 (512)
Q Consensus 195 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g----------- 255 (512)
.++.|.... ++|-.+|.+++..+... +..+=....++.|.+-|+ -|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67778888888877654 456666677888889999 99999999998775532
Q ss_pred -----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 043142 256 -----LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 256 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 294 (512)
+-+-++.++++| +.+|+.||-.+-..|+.++++.+-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 224478899999 67899999999999999999888643
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.52 E-value=0.47 Score=42.69 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=46.7
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH-hHHHHHHHHHHHcCCHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP-GVWGALLNSCKLHGHVK 326 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-~~~~~ll~~~~~~g~~~ 326 (512)
+.|++..|..-|...++.+.-.+ ....+--|...+...|++++|..+|..+ |-.|-. ...--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555554432111 2233344555555566666655555444 212211 24444555556666666
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043142 327 LAELALEKLIELEPHDA 343 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~ 343 (512)
+|...|+++.+..|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666544
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.52 E-value=3.4 Score=37.03 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=110.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc------hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV------VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFV 245 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~ 245 (512)
|-...|+.- ..-.+.|++++|.+.|+.+..+-+ .+--.++-++-+.+++++|+..+++.....+ ||. .|.
T Consensus 33 p~~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 334455543 345678999999999999985432 3445566778899999999999999988776 443 344
Q ss_pred HHHHHHhc---C----CC---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhH-H-H
Q 043142 246 GVLSACSR---G----GL---FDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGV-W-G 313 (512)
Q Consensus 246 ~ll~a~~~---~----g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~-~-~ 313 (512)
.-|.+.+. . .+ ..+|..-|+.++.++ |+. .-...|..-+..+. |... + .
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHH
Confidence 44444432 1 12 223334444444332 321 11112221111110 1110 1 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDA---GNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.+..-|.+.|.+..|..-++++++.-|..+ ..+..+.++|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345568899999999999999998866544 35556788899999999999887776543
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.51 E-value=2.1 Score=43.13 Aligned_cols=171 Identities=11% Similarity=-0.004 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-C-------ChhHHHHHHHHHhc----cCChHH
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-P-------SEATLVTVISASAD----IAALPQ 159 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-p-------d~~t~~~ll~~~~~----~~~~~~ 159 (512)
+.-+|..++.. +||. ...++....=.||-+.+++.+.+..+.+ . -..+|..++..+.. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 44555555543 2333 3445555566677777777777655432 1 11234444444433 345677
Q ss_pred HHHHHHHHHHcCCCCchHHHH-HHHHHHHhcCCHHHHHHHHHhcCCC-------CchHHHHHHHHHHHcCChHHHHHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKT-ALVDMYAKCGLVKVARNLFEQLREK-------RVVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
+.+++..+.+. -|+...|. --...+...|++++|.+.|+..... ....+--+...+....++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888877765 24443333 3356677788999999999875531 12334445566777889999999999
Q ss_pred HhHHCCCCCHHHHHHHHH-HHhcCCCH-------HHHHHHHHHHH
Q 043142 232 KMKDEVQPDHITFVGVLS-ACSRGGLF-------DEGRMFFESMV 268 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~-a~~~~g~~-------~~a~~~~~~~~ 268 (512)
++.+...-...+|.-+.. ++...++. ++|..+|.++.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 998865544444444433 33456666 88888888774
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.43 E-value=2.5 Score=42.58 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHhccCChHHHHHHHHhCC------CCCCHhHHHHHHHHHHHcCCHH
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPSVQHYTCM-VDLLGHSGRLDEACDLIMQMR------VKPDPGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~------~~p~~~~~~~ll~~~~~~g~~~ 326 (512)
....+.|.+++..+.++ -|+...|... ...+...|++++|++.|++.- .+.....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45667778888877654 4655444333 345666788888888887651 0112233444555577788999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHH-HHHhccCh-------hHHHHHHHHHHhC
Q 043142 327 LAELALEKLIELEPHDAGNYVILSN-IYARAANW-------EGVAKLRKLMIDR 372 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~m~~~ 372 (512)
+|.+.|.++.+...-+...|..+.- .+...|+. ++|.++|.++.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999877666566665544 44677888 8888888877653
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.43 E-value=0.093 Score=30.61 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.34 E-value=0.33 Score=43.59 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHccCC--CCCchHHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC----------
Q 043142 26 AHQLFDRIP--QRNLFLWNVLIRAYAWN-----GPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---------- 88 (512)
Q Consensus 26 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------- 88 (512)
.++.|...+ ++|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445666666 57888888888777654 4555566667888888888888889888887654331
Q ss_pred ------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 89 ------IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 89 ------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
-+-+..++++|...|+-||-.+-..|++.+.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 23466777777777777777777777777766654
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.34 E-value=1 Score=43.87 Aligned_cols=129 Identities=11% Similarity=0.053 Sum_probs=92.0
Q ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc---------cCChHHHHHHHHhC-CCC-C
Q 043142 245 VGVLSACSRG-----GLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGH---------SGRLDEACDLIMQM-RVK-P 307 (512)
Q Consensus 245 ~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~-p 307 (512)
...+.+..+. ...+.|..+|.+.+....++|+ ...|..+...+.. .....+|.++.++. ... -
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455555442 2467788899998755566774 4455554443322 22344555665555 333 3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
|......+..+....++++.|...|+++..++|+.+.+|........-.|+.++|.+.+++..+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555666777777788889999999999999999999999999999999999999999998865543
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.18 E-value=0.16 Score=29.49 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56677778888888888888888888888764
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.17 E-value=1.9 Score=34.21 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
+...+.+....|.-+.-.++...+.+.+ .+++...-.+..+|.+.|+..+|.+++.+.-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344455555566666666666655432 4455555566666666666666666655543
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.13 E-value=0.37 Score=37.88 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH--hHHHHHHHHHHHc
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP--GVWGALLNSCKLH 322 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~--~~~~~ll~~~~~~ 322 (512)
+.+..|+++.|++.|.+.+ .+-| ....||.-..++.-.|+.++|++-+++. +-+... ..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4566777777777777765 3444 5667777777777777777777776665 211111 1333333446778
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 043142 323 GHVKLAELALEKLIELEPH 341 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~ 341 (512)
|+.+.|..-|+.+-+++.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888777754
No 264
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=8.5 Score=40.02 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcC
Q 043142 245 VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG 323 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 323 (512)
...+..|.+.|-+++-.-++.+| | .++.+|.-.--+-++.++|+++.++ +-|...|..||..+...-
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 34445555555555555555554 2 1333333334444566666666555 346777777777665543
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=1.7 Score=40.30 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHH--HH-HHH-HHHHhcCCCHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHI--TF-VGV-LSACSRGGLFDEGR 261 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~--t~-~~l-l~a~~~~g~~~~a~ 261 (512)
.|+.-+|-..++++.+ .|..+|+.-=.+|..+|+.+.-...++++...-.||.. +| ..+ .-++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 3455555444444442 24555555555666666666666666555433112221 11 111 12333456666666
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 262 MFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 262 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+.-++.. .+.| |.-.-.++...+.-.|+..++.++..+-
T Consensus 196 k~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 5555543 2333 3334444455555556666666655554
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.90 E-value=4.1 Score=35.68 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=112.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHH-HHHH
Q 043142 145 VTVISASADIAALPQGRELHGFSWRH-RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMIT-GYAM 219 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~-~~~~ 219 (512)
......+...+.+..+...+...... ........+..+...+...+++..+.+.+......+ ......... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333344444444444444333321 223333444455555555666666666666654321 122222223 5677
Q ss_pred cCChHHHHHHHHHhHHCCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCh
Q 043142 220 HGHSTKALDLFEKMKDEVQP----DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 293 (512)
.|+.+.|...+.+... ..| ....+......+...++.+.+...+....+. .+ ....+..+...+...+.+
T Consensus 143 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 143 LGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred cCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccH
Confidence 7777777777777744 223 2233333333456677888888888877633 33 356677777778888888
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 294 DEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 294 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888887766 33444 344555555555667788899888888888875
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.53 E-value=0.22 Score=31.22 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
++..+...|.+.|++++|+++|+++.+.+|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 455666777777777777777777777766543
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.28 E-value=8.5 Score=37.38 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHccCCC--CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043142 26 AHQLFDRIPQ--RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK 103 (512)
Q Consensus 26 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 103 (512)
-+++=+++.+ .|+.+|-.||.-|..+|..++..+++++|..- .+--...|..-+++-....+++..+.+|.+.++..
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3466677764 38899999999999999999999999999652 22223467777877777789999999999998875
Q ss_pred CCCChhHHHHHHHHHHh
Q 043142 104 WETDVFVGAALIDMYAK 120 (512)
Q Consensus 104 ~~~~~~~~~~li~~~~~ 120 (512)
+ +...|...+.---+
T Consensus 107 l--~ldLW~lYl~YIRr 121 (660)
T COG5107 107 L--NLDLWMLYLEYIRR 121 (660)
T ss_pred c--cHhHHHHHHHHHHh
Confidence 4 46666666653333
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=1.9 Score=40.00 Aligned_cols=145 Identities=9% Similarity=0.100 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-CCChhHHHHH--HH--HHhccCChHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-DPSEATLVTV--IS--ASADIAALPQG 160 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~pd~~t~~~l--l~--~~~~~~~~~~a 160 (512)
.|+..+|-..++++++. +|.|...++--=++|.-.|+.+.-...++++... +||...|+-+ +- ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555556665544 3556666666666666666666666666666544 5555333322 11 12345666666
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-----chHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK--R-----VVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
++.-++..+.+ +.|.-...++...+--.|+..++.+...+-... + ...|--..-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666555543 334445555566666666666666655443321 0 01111112223444667777777765
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.16 E-value=4.3 Score=33.63 Aligned_cols=69 Identities=7% Similarity=-0.035 Sum_probs=39.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhc
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASAD 153 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~ 153 (512)
-...++.+.++.++.-+.-.. |. ..+-..-...+.+.|++++|+.+|+++.+..|....-..|+..|..
T Consensus 20 al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 345556666666666655442 22 2222223344667778888888888777666555444455555543
No 271
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.11 E-value=8.2 Score=40.40 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCC-------chHHHHHHHHHHHC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGP-------YEVAIELYYRLLEI 67 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 67 (512)
++|-.+.|+|++++|.++..... ++....+-..+..|+...+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 46778889999999999993322 2344556666777765422 12444455555543
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.90 E-value=9.2 Score=36.75 Aligned_cols=146 Identities=8% Similarity=-0.024 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P---DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQH 279 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 279 (512)
...+|..++..+.+.|+++.|...+.++..... + ++.....-+...-..|+-.+|...++...+. .+.. +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 346788888888888888888888888876542 1 3333444455566678888888888777652 1111 1111
Q ss_pred HHHHHHHHhccCChHHHHHH-HHhCCCCCCHhHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 280 YTCMVDLLGHSGRLDEACDL-IMQMRVKPDPGVWGALLNSCKLH------GHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....|..+...
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000011222222223333 778888999999999988877777766665
Q ss_pred HH
Q 043142 353 YA 354 (512)
Q Consensus 353 ~~ 354 (512)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=1.6 Score=36.41 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=47.9
Q ss_pred ccCChHHHHHHHccCCCCCchHHHHHH-----HHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHH--HHhccCChH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLFLWNVLI-----RAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALK--ACSALSAIE 90 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~--~~~~~~~~~ 90 (512)
+.++.++|+..|..+.+.+--+|-.|. ....+.|+...|...|++.-.....|-.. -...|=. .+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344555555555555443333333222 22344455555555555554332222221 0111111 123344444
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
....-.+-+-..+-+.-...-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444443333322222223333444444445555555555555543
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.68 E-value=18 Score=39.63 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCChhHHHHHHHHHHhCC--ChHHHHHHHHhhhh
Q 043142 105 ETDVFVGAALIDMYAKCS--CVVNARQVFDKILE 136 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 136 (512)
.|+ ...-.+|..|.+.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 45567888888888 67888877777664
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.45 E-value=0.73 Score=42.12 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.++..++..+...|+.+.+...++++.+.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566777777888888888888888888888888888888888888888888888887765
No 276
>PRK09687 putative lyase; Provisional
Probab=92.43 E-value=9.1 Score=35.52 Aligned_cols=240 Identities=15% Similarity=0.031 Sum_probs=137.5
Q ss_pred HHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh----HHHHHHHHHHHHhCC
Q 043142 29 LFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI----EEGRRIHEDVIRNKW 104 (512)
Q Consensus 29 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~ 104 (512)
+++.+..+|.......+.++...|. .++...+..+... +|...=...+.+++..|+. +++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 3444456677666667777777764 3455555555442 3444455556667777753 3455666555333
Q ss_pred CCChhHHHHHHHHHHhCCCh-----HHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCV-----VNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 179 (512)
.++..+-...+.++...+.- ..+...+.... .+++..+-...+.++.+.++. .+...+-.+.+ .++..+-
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHH
Confidence 46666766666666655421 22333333322 234555556667777777763 45555544444 3445566
Q ss_pred HHHHHHHHhcC-CHHHHHHHHH-hcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCH
Q 043142 180 TALVDMYAKCG-LVKVARNLFE-QLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLF 257 (512)
Q Consensus 180 ~~li~~y~~~g-~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~ 257 (512)
...+.++.+.+ +...+...+. .+..++...-...+.++.+.|.. .|+..+-+..+.+. .....+.++...|..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc----hHHHHHHHHHhcCCH
Confidence 66666666543 1334444443 34456666667777778877774 56666655554422 234677788888885
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLG 288 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (512)
+|...+..+.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 677777777643 456666666665554
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.34 E-value=9.4 Score=35.45 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHcCChH---HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CCCChhHHHHH
Q 043142 208 VSWNAMITGYAMHGHST---KALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH-IDPSVQHYTCM 283 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l 283 (512)
.+...++.+|...+..+ +|.++++.+....+-....+..-+..+.+.++.+++.+.+.+|+.... .+.+.......
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 46677888888877654 566677777555442345555566777778999999999999986533 22233333333
Q ss_pred HHHHhccCChHHHHHHHHhC---CCCCCHhHHH--HHHHHH---HHcCC------HHHHHHHHHHHHhc--CCCCCchHH
Q 043142 284 VDLLGHSGRLDEACDLIMQM---RVKPDPGVWG--ALLNSC---KLHGH------VKLAELALEKLIEL--EPHDAGNYV 347 (512)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~--~ll~~~---~~~g~------~~~A~~~~~~~~~~--~p~~~~~~~ 347 (512)
+.-+..... ..|...+..+ ...|....|. .++... .+.++ ++....++..+.+. .|-++.+-.
T Consensus 165 i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 333344333 3444444433 2333332121 111111 11111 44444455533332 233333322
Q ss_pred ---HH----HHHHHhccChhHHHHHHHHH
Q 043142 348 ---IL----SNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 348 ---~l----~~~~~~~g~~~~a~~~~~~m 369 (512)
.| +..+.+.+++++|.+.++.-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 34466889999999988753
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=5.4 Score=33.41 Aligned_cols=129 Identities=14% Similarity=0.050 Sum_probs=74.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHH---HHHH-
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFV-GAALIDMYAKCSCVVNARQVFDKILERDPSEATLV---TVIS- 149 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~---~ll~- 149 (512)
+|...++ +++.+..++|..-|..+.+.|...-+.. .--........|+-..|...|+++-...|-+.... -|=.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444443 3455677788888888887775432221 11223345677888888888888766554333221 1111
Q ss_pred -HHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 043142 150 -ASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE 204 (512)
Q Consensus 150 -~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 204 (512)
.+...|.++......+.+-..+-+.-...-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2245566666555555554444444445555666666677777777777766543
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.94 E-value=2.2 Score=36.41 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc--chHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-C------hh
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN--FTFPFALKACSALSAIEEGRRIHEDVIRNKWET-D------VF 109 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~------~~ 109 (512)
..+..+...|.+.|+.++|++.|.++......|.. ..+-.+++.+...+++..+.....++...--.+ | ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46888899999999999999999999887555543 346777888888899998888877665432121 1 12
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhh
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILE 136 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (512)
+|..|. +...+++..|-+.|-....
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCc
Confidence 333333 2346889888888877643
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.83 E-value=4.8 Score=37.63 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhc--cC----ChHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCh-
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSA--LS----AIEEGRRIHEDVIRNKW---ETDVFVGAALIDMYAKCSCV- 124 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~- 124 (512)
++.+.+++.|.+.|.+-+.++|.+..-.... .. ....+..+|+.|.+... .++..++.+|+.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556778888888888777776664433332 22 24567788888887642 3445555555543 33332
Q ss_pred ---HHHHHHHHhhhhCC---CCh-hHHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 125 ---VNARQVFDKILERD---PSE-ATLVTVISASADIAA--LPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 125 ---~~A~~~~~~m~~~~---pd~-~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
+.+...|+.+.+.+ -|. ...+.++..+..... ...+..+++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44555666665533 122 233333333322222 33556666677777766665555544
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.81 E-value=11 Score=35.04 Aligned_cols=19 Identities=11% Similarity=-0.226 Sum_probs=12.1
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 043142 318 SCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~ 336 (512)
.+.+.++++.|.+.|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776543
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.78 E-value=5.4 Score=39.32 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 309 PGVWGALLNSCKLHGHVKLAELALEKLIELEPH--DAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 309 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
..+=..|..++.+.|+.++|.+.++++++..|. +......|++.+...+++.++..++.+-.+-..+++..++|
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 334455777788999999999999999887765 45577889999999999999999998876555555555444
No 283
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=2.7 Score=42.13 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=97.3
Q ss_pred cCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHH
Q 043142 20 CDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDV 99 (512)
Q Consensus 20 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 99 (512)
.|+++.|-.++-.++++ .-+.++..+.+.|..++|+++- ..||. -| ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh
Confidence 57777777766666632 3455666677777777777652 22222 12 2234568888887776543
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHH
Q 043142 100 IRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVK 179 (512)
Q Consensus 100 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 179 (512)
.+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. .
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~ 724 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------N 724 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------c
Confidence 3566788888888888999888888877533 56677777777777766666666666552 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 043142 180 TALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m 202 (512)
|...-+|...|+++++.+++.+-
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhc
Confidence 33344566778888877777554
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=21 Score=37.66 Aligned_cols=177 Identities=12% Similarity=0.021 Sum_probs=112.3
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCchHHHHHHH----HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIR----AYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
.-+++..+...++.|..+-+.-.. |...-..+.. -+-+.|++++|...|-+-+.. +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345666666777777777655332 3333333333 345679999999988876543 3332 2455555555
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
.+..-..+++.+.+.|+. +...-+.|+++|.|.++.+.-.+..+... .+--.+-.-..+..|.+.+-+++|..+-...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 666666778888888864 45556779999999999999888877765 2211223556667777777777766554332
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 043142 168 WRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK 205 (512)
Q Consensus 168 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 205 (512)
.. +..+... .+-..|++++|.+.+..++-.
T Consensus 490 ~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 490 KK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 21 2333333 344578899999999888743
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.40 E-value=0.43 Score=27.62 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
+|..+...+...|++++|...|++.++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888887773
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.36 E-value=8.5 Score=35.98 Aligned_cols=126 Identities=10% Similarity=0.159 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh--cC----CHHHHHHHHHhcCCC-------CchHHHHHHHHHHHcCC-
Q 043142 157 LPQGRELHGFSWRHRFELNVKVKTALVDMYAK--CG----LVKVARNLFEQLREK-------RVVSWNAMITGYAMHGH- 222 (512)
Q Consensus 157 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~- 222 (512)
++....+++.+.+.|+.-+..++-+....... .. ....|..+|+.|.+. +-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456778888888888887766654333333 22 345678888888752 33555555543 2222
Q ss_pred ---hHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhc-CCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 223 ---STKALDLFEKMKDEVQ--PDHITFVGVLSACSR-GGL--FDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 223 ---~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~-~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.+.+...|+.+.+.|. .|..-+.+-+-++.. ... ..++..+++.+. +.|+++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 3466777777877666 344333333333332 222 346777888885 4488887777766543
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.19 E-value=2.3 Score=38.94 Aligned_cols=57 Identities=19% Similarity=0.389 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
++..++..+..+|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4445555555555555555555554432 23455555555555555555555555443
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.18 E-value=0.46 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
|..|...|...|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666644
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=11 Score=33.57 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
|..-..+|-...++++|...+.+..+ +..-|...|. .. ..++.|.-+.+++.+. +--...|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 44444566666777777776666542 1121222221 11 2234444444444332 2234456666777888
Q ss_pred CCChHHHHHHHHhh
Q 043142 121 CSCVVNARQVFDKI 134 (512)
Q Consensus 121 ~g~~~~A~~~~~~m 134 (512)
+|..+.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 88877777666654
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.91 E-value=0.5 Score=28.00 Aligned_cols=26 Identities=46% Similarity=0.556 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLL 65 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~ 65 (512)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777643
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.77 E-value=9 Score=32.19 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 94 RIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+..+.+.+.+++|+..++..+++.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455566667778888888888888888887766655543
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.63 E-value=1.1 Score=38.18 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=66.2
Q ss_pred HhccCChHHHHHHHHhC-CCCC------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 287 LGHSGRLDEACDLIMQM-RVKP------DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
+.+.|++++|..-+... ..-| ..+.|..-..++.+.+.++.|+.-..++++++|....+..--..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45667777776666554 1111 2334555566778889999999999999999998777777778899999999
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
++|+.=++.+.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999887654
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.55 E-value=0.56 Score=27.16 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+|..+...|...|++++|+..|++..+.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777766654
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.36 E-value=0.5 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 96 HEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
|++.++.. |.+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445554 567788888888888888888875
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.92 E-value=28 Score=36.49 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred HHHHHccCChHHHHHHHccCCCC-----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 14 VHLYSACDCLHNAHQLFDRIPQR-----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
++-+.+.+.+++|+.+-+..... -...+...|..+...|++++|-.+.-.|... +..-|.-.+.-++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45566778888888887765432 2346777888888888888888887777643 33344444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
.... ...+.......+..+|..++-.+.. ..-..+++...+-.++...-..++++- ..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp~~Lys~l~iisa~------------~~q~~ 499 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWPGHLYSVLTIISAT------------EPQIK 499 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCChhhhhhhHHHhhc------------chHHH
Confidence 4322 1112211112355677777766655 222222222222222222222222221 00111
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRV 207 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 207 (512)
+. .-+...-..|+..|...+++++|...+-...++++
T Consensus 500 q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 500 QN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11 11222334488999999999999999988877664
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.87 E-value=10 Score=31.45 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=54.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHHcCCH
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSCKLHGHV 325 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~ 325 (512)
++.-...++.+.+..++..+. -+.|. ...-..-...+.+.|++.+|+.+|+++. -.|....-.+|+..|....+-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344456678888888888774 45663 3333334445778888888888888883 234444555666666554443
Q ss_pred HHHHHHHHHHHhcCC
Q 043142 326 KLAELALEKLIELEP 340 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p 340 (512)
..=....+++++.++
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 444444555555554
No 297
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.48 E-value=14 Score=32.35 Aligned_cols=175 Identities=15% Similarity=0.026 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFS 167 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (512)
+..|+--|.+.+... |.-+.+||-|.--+...|+++.|.+.|+...+.+|.- .+...=.-++.-.|++..|.+-+...
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 333444444444332 3346788888888889999999999999999998742 23333233345568888887766655
Q ss_pred HHcC-CCCchHHHHHHHHHHHhcCCHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC------
Q 043142 168 WRHR-FELNVKVKTALVDMYAKCGLVKVARN-LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP------ 239 (512)
Q Consensus 168 ~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p------ 239 (512)
-+.. -.|-...|--+. -..-+..+|.. +.++....|..-|..-|-.|.-..-.+ ..++++++.....
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAE 234 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHH
Confidence 5543 233333333222 22335555554 344555555555555444333221111 2233333322111
Q ss_pred -CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 240 -DHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 240 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
-+.||--+..-+...|++++|..+|+-.+.
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 235777888889999999999999988764
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.31 E-value=13 Score=34.06 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
+++.....|...|.+.+|.++.++++.++|-+...+..|+..++..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567789999999999999999999999999999999999999998888888888753
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.08 E-value=0.85 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+..+...|.+.|++++|++.|++..+.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556677777778888888877777766554
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.08 E-value=40 Score=37.20 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..|.+...-+.+...+++|.-.|+..-+ .--.+.+|...|++++|..+..++.. +-.--..+-..|+.-+
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence 3444444555556677777666665321 12345677778888888888776631 1111122336677777
Q ss_pred hccCChHHHHHHHHhCC
Q 043142 288 GHSGRLDEACDLIMQMR 304 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~ 304 (512)
...++.-+|-++..+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 77888888777777663
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.91 E-value=5.4 Score=34.10 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C---CHHHHHH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREKR------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P---DHITFVG 246 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p---~~~t~~~ 246 (512)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...... + +...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888899999999999998887654 24566777777788888888877777654322 1 1111111
Q ss_pred HHH--HHhcCCCHHHHHHHHHHHH
Q 043142 247 VLS--ACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 247 ll~--a~~~~g~~~~a~~~~~~~~ 268 (512)
+.. ++...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2233566666666665543
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.50 E-value=2.2 Score=34.66 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=37.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..++.++++.++..+.-+.|..+..-..-...+...|+|++|.++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36677777777777777777766666666666777777777777777776554
No 303
>PRK09687 putative lyase; Provisional
Probab=88.32 E-value=21 Score=33.09 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh----HHHHHHHHhhhhCCCChhHHHH
Q 043142 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV----VNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 71 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
+|.......+.++...|..+.... ...+.+ .+|..+-...+.++.+.|+. +++...+..+...+|+...-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHH
Confidence 455555556666666664332222 222322 34666666677777777763 4567777766666677666666
Q ss_pred HHHHHhccC
Q 043142 147 VISASADIA 155 (512)
Q Consensus 147 ll~~~~~~~ 155 (512)
.+.+++..+
T Consensus 111 A~~aLG~~~ 119 (280)
T PRK09687 111 AINATGHRC 119 (280)
T ss_pred HHHHHhccc
Confidence 666665543
No 304
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.84 E-value=25 Score=33.32 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=72.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCch----
Q 043142 145 VTVISASADIAALPQGRELHGFSWRHR-----FELNVKVKTALVDMYAKCGLVKVARNLFEQLR-------EKRVV---- 208 (512)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~---- 208 (512)
.++..+....+.++++.+.|+.+.+.. ......++.+|...|.+..|+++|.-...+.. -.|..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345555666666777777776665532 12234677788888888888887755443322 22321
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH----HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 209 --SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH----ITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 209 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+.--|.-++-..|+..+|.+.-++..+... -|. .....+.+.|...|+.+.|..-|++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122234456667777777777666543222 333 334456667777888887776666554
No 305
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.61 E-value=41 Score=35.50 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLLGHSGRLDEACDLIMQMR-VKPDPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
+.+.|..++.......++.+. ......+.......+..++|...+.... ...+...+..-+......++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 445566666655433333332 1222333322333322445555555442 1122233333333444566666655555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
..|.........-..=+..++...|+.++|..+|+..
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5553322233344444555555566666666666654
No 306
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.49 E-value=10 Score=28.48 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|.++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356666666666554422 22222233445677899999999988888889888887765 356777777777777877
Q ss_pred CCCCCHHHHHH
Q 043142 236 EVQPDHITFVG 246 (512)
Q Consensus 236 ~~~p~~~t~~~ 246 (512)
.|.|...+|..
T Consensus 97 sg~p~lq~Faa 107 (115)
T TIGR02508 97 SGDPRLQTFVA 107 (115)
T ss_pred CCCHHHHHHHH
Confidence 77776666654
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.39 E-value=4.2 Score=30.28 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
++.+-++.+....+.|++....+.++||.+.+++..|.++++-+.... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455566666667778888888888888888888888888888765332 22344555554
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.12 E-value=29 Score=36.74 Aligned_cols=178 Identities=12% Similarity=0.015 Sum_probs=103.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNV--KVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHG 221 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 221 (512)
...-+....+...++.|..+- ...+.+++. .......+-+.+.|++++|...|-+....-.. ..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 344455555555555555442 333433332 22233344455678888888777654322111 22455566666
Q ss_pred ChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 222 HSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIM 301 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (512)
+..+-..+++.+.+.|..+...-..|+.+|.+.++.+.-..+.+..- + |.- ..-....+..+.+.+-+++|..+-.
T Consensus 412 ~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 67777777888888888555555678888888888887776665442 2 211 1113345667777777788877776
Q ss_pred hCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 302 QMRVKPDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 302 ~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
+.+. +......++ -..+++++|.+.++.+
T Consensus 488 k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6653 233333333 3467788888776654
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.09 E-value=15 Score=30.01 Aligned_cols=53 Identities=4% Similarity=-0.040 Sum_probs=25.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDV-FVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
..+.+.+..++..+.-.. |+. .+-..-...+.+.|++++|.++|+++.+..+.
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 455555555555444332 211 11111223345566666666666666555433
No 310
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.31 E-value=10 Score=32.09 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
+++|...|+++...+|.+. .|..-+.+.. +|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 6677788888888899874 6766665553 577888888777653
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.22 E-value=3.8 Score=37.72 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=71.8
Q ss_pred HHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC---CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 043142 28 QLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI---GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW 104 (512)
Q Consensus 28 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 104 (512)
+-|..-....+.+-..++..-....+++.+...+-.++.. ...|+.. -.++++.|.+ -+.++++.+...=+..|+
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhcc
Confidence 3455544455566666666666677788888777776543 1233332 2233333333 356678888888888888
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 138 (512)
-||..+++.||+.+.+.+++.+|.++.-.|...+
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887776665543
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.92 E-value=0.72 Score=37.82 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHccCChHHHHHHHccCC----CCCchHHHHHHHHHHhcCCchHHHHHHH
Q 043142 14 VHLYSACDCLHNAHQLFDRIP----QRNLFLWNVLIRAYAWNGPYEVAIELYY 62 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 62 (512)
|..|.+.+.++.+.++++.+. ..+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444443332 1234444555555555554444444443
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.64 E-value=7.1 Score=29.42 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 225 KALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 225 ~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
+...-++.+-.... |++....+.+.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 45555566666666 9999999999999999999999999999976544 33336776664
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.40 E-value=4.6 Score=37.58 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
.-|.++|.+++|+..|..-+. +.| |.+++..-..+|.+...+..|+.--...+... ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 346677888888888877665 345 77777777778887777776666555544332 11122233333333334555
Q ss_pred HHHHHHHHhhhhCCCCh
Q 043142 125 VNARQVFDKILERDPSE 141 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~ 141 (512)
.+|.+-++...+..|+.
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 66666666665555553
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.86 E-value=8.7 Score=33.21 Aligned_cols=73 Identities=5% Similarity=-0.006 Sum_probs=47.2
Q ss_pred HHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhccCChHHHH
Q 043142 224 TKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI--DPSVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~ 297 (512)
++|.+.|-++...+. -++.....|...|. ..+.+++.+++....+-.+- .+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777776666 55555555555444 56677777777766654322 346777777777777777777764
No 316
>PRK12798 chemotaxis protein; Reviewed
Probab=84.80 E-value=40 Score=32.77 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHhcCCC----CchHHHHHHHHH-HHcCChHHHHHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHH
Q 043142 189 CGLVKVARNLFEQLREK----RVVSWNAMITGY-AMHGHSTKALDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a 260 (512)
.|+-++|.+.|..+... .+..|-+|+.+- ....++.+|+.+|++..-.-+ ........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 69999999999988643 345677777654 446679999999999875433 3444555566677889999999
Q ss_pred HHHHHHHHHhcCCCCChhH-HHHHHHHHhccC---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 261 RMFFESMVRDYHIDPSVQH-YTCMVDLLGHSG---RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
..+-....+++.-.|-..- +..++..+.+.+ ..+.-..++..|.-.-....|..+.+.-...|+.+.|...-++++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 8888887777766664332 233333443333 344455566666422234589899999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHh-----ccChhHHHHHHHHHH
Q 043142 337 ELEPHDAGNYVILSNIYAR-----AANWEGVAKLRKLMI 370 (512)
Q Consensus 337 ~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 370 (512)
.+...+ ..-...+..|.. ..+.+++.+.+..+.
T Consensus 285 ~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 285 KLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 876322 222233333422 234556655555443
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.62 E-value=8.6 Score=33.09 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=11.1
Q ss_pred HHHhCCChHHHHHHHHhhhhCCC
Q 043142 117 MYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+|.+...+++|+.-|.++.+.+|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 44444444555554444444444
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.41 E-value=5.5 Score=30.02 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445556666666777888888888888888888888888887665442 222335655543
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.94 E-value=25 Score=29.62 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
+..+++.+...|++-+|+++.++.+ ..+...-..++.+..+.+|...-..++
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 4445566666666666666666642 112222234444444444444333333
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.91 E-value=57 Score=33.80 Aligned_cols=175 Identities=7% Similarity=0.052 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHH--HHH-HHhCCChHHHHHHHHhhhh-------CCCChhHHHHHHHHHhccC---
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAAL--IDM-YAKCSCVVNARQVFDKILE-------RDPSEATLVTVISASADIA--- 155 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~~pd~~t~~~ll~~~~~~~--- 155 (512)
...+.++++...+.|. ......-.+ ..+ +....+.+.|+..|..+.+ .+ +......+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCc
Confidence 4567777777777662 111211112 222 3455677888888877755 22 2334444555554422
Q ss_pred --ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHhcCCCC-chHHHHHHHHHH----HcCChHHHH
Q 043142 156 --ALPQGRELHGFSWRHRFELNVKVKTALVDMYAK-CGLVKVARNLFEQLREKR-VVSWNAMITGYA----MHGHSTKAL 227 (512)
Q Consensus 156 --~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~----~~g~~~~A~ 227 (512)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|......+ +.+.-.+...|. ...+...|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 45557777777766663 233222222222222 235667777777665543 222221211111 223566777
Q ss_pred HHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043142 228 DLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESM 267 (512)
Q Consensus 228 ~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 267 (512)
.++++.-+.+.|-..--...+..+.. +..+.+...+..+
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 77777766665333333333344444 5555555555444
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.85 E-value=8.8 Score=28.65 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 223 STKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.-++.+-++.+..... |++....+.+.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3455556666666666 9999999999999999999999999998864433 24445665553
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.42 E-value=1.3 Score=25.20 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=17.3
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
+..+|.+.|++++|.+.|+++.+..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445566667777777777776665554
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.30 E-value=1.8 Score=24.91 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCC
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+|..+...|.+.|++++|.+.|++..+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666777777777777777777665443
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.26 E-value=2.6 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
+..++...|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334455556666666666666655553
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.10 E-value=22 Score=34.98 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=68.8
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
...|++..|.+-+....+.+.-.|+.... ....+...|.++.+...+.... +.....+...+++.....|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665554444444444334443332 2333556677777777766551 2334456667777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...+-|+..+-.++.........--..|-++++...++++...+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 777777765544444333333333445667777777777655443
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.01 E-value=2.8 Score=38.91 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCC
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGH 324 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 324 (512)
..-|.++|.+++|+..|...+ .+.| +..++..-..+|.+..++..|+.-.... .+. .-...|..-..+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 346888999999999999876 5678 8888888888999999988887665544 111 112256666666677889
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 325 VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
..+|.+-++.+++++|.+.. |-..|.+.....++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 99999999999999998653 334444444444443
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=34 Score=30.44 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=17.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
-...+++.+|+.+|+++....-++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356778899999999887655433
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.31 E-value=0.97 Score=37.05 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=43.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHH
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 226 (512)
++..+.+.+.+....++++.+.+.+...+....+.++..|++.++.++..+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555556666666666666655555667777777777777665666555553222 2222333444444444444
Q ss_pred HHHHHH
Q 043142 227 LDLFEK 232 (512)
Q Consensus 227 ~~~~~~ 232 (512)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.27 E-value=1.9 Score=23.22 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhccChhHHHHHHH
Q 043142 345 NYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777664
No 330
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.12 E-value=58 Score=32.58 Aligned_cols=173 Identities=10% Similarity=0.092 Sum_probs=96.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK--RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
.|.....++++.++..-.+.-.+.+-.+|..- +-..|..++..|..+ ..++-..+++++.+....|.+.-..|..-|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34444556666666666666666666666542 345666677777776 456667777777665555554444444444
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCHhHHHHHHHHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPS------VQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~ 321 (512)
.+ ++.+.+..+|..+..+ +-|. ...|.-|+... ..+.+..+.+...+ +...-.+.+.-+-.-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 44 6666777777766532 3331 12444444322 23444444444444 222233444555556667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 322 HGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 322 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
..++++|++++..+++.+..|.-+-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 7778888888777777665554444444433
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.99 E-value=3 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777654
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.80 E-value=15 Score=37.26 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=58.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHccC-------C--------------CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRI-------P--------------QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI 67 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~-------~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 67 (512)
.-+.+...+.++|-.++|+.+--.- . ..+..-|..|.++..+.|++..|.+.|.+...
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d- 694 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD- 694 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc-
Confidence 3456666777777766666542110 0 12445566666666666666666666655432
Q ss_pred CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 68 GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 68 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
|..|+-.+...|+-+....+-....+.| .. |....+|...|+++++.+++.+-
T Consensus 695 --------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 695 --------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 4445555555555554444444444444 22 22233445566666666665443
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.46 E-value=66 Score=32.78 Aligned_cols=120 Identities=15% Similarity=0.086 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-----CCCCCHhHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-----RVKPDPGVWGA 314 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 314 (512)
+..+|..-+.--...|+.+....+|+...-- +.--...|--.+.-....|+.+-|..++.+. +-.|......+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4455666666666667777777666665411 1112334444444444456666666665544 11222222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
.+ +-..|++..|..+++++.+.-|.....-..-+....+.|+.+.+.
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 22 234567777777777776655554444444455556666666666
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.41 E-value=61 Score=32.33 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---hccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHc
Q 043142 248 LSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL---GHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLH 322 (512)
Q Consensus 248 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 322 (512)
+.-+-+.+-...|...+..+... -+|+...|..+|..= ..+| +..+..+++.| .+..|+..|...+.--..+
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 33444445555555555555321 122444444444322 1222 44444444444 1224444555544444455
Q ss_pred CCHHHHHHHHHHHHh
Q 043142 323 GHVKLAELALEKLIE 337 (512)
Q Consensus 323 g~~~~A~~~~~~~~~ 337 (512)
|..+.+-.++.++.+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 555555555544443
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.39 E-value=52 Score=31.51 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=55.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH----DAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...+|..+...+++.|.++.|...+.++...++. .+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999986522 456666778888999999999999988877433
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.29 E-value=3.4 Score=22.49 Aligned_cols=29 Identities=31% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444555555555666655555555444
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.94 E-value=4.1 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555556666666666666655554
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.79 E-value=44 Score=30.33 Aligned_cols=188 Identities=18% Similarity=0.240 Sum_probs=103.2
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---------
Q 043142 139 PSEATLVTVISASADIAALPQGRELHGFSWRH-----RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--------- 204 (512)
Q Consensus 139 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------- 204 (512)
-+.-+.++++.-.+...+.+.-...|+.-++. +-..--.+-+.|...|...|++.+-.+++.++..
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 34444555555555444444444444432221 0000112334567777888888888888777642
Q ss_pred ---CC---chHHHHHHHHHHHcCChHHHHHHHHHhHHC--CCCCHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhc
Q 043142 205 ---KR---VVSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACS-----RGGLFDEGRMFFESMVRDY 271 (512)
Q Consensus 205 ---~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~ 271 (512)
++ ...|..=|..|..+.+-.+...+|++...- .+|.+.... +++-|. +.|.+++|..-|-+..+.+
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 11 246777788888888877888888876543 337766554 455553 5678887764433333443
Q ss_pred CC--CC---ChhHHHHHHHHHhccCChHHHHHHHH--hC-CC--CCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 272 HI--DP---SVQHYTCMVDLLGHSGRLDEACDLIM--QM-RV--KPDPGVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 272 ~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~--~m-~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
.- .| +.--|..|..++.+.|-- -|+ +. |. .|.....+.|+.+|-.+ ++.+-++++.
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 22 23 233466677777776621 111 11 33 35556778888888544 4444444443
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.71 E-value=3.8 Score=26.84 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
.+.-++.+.|++++|.+..+.+++.+|.|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999988643
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.25 E-value=3.3 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=12.4
Q ss_pred HHHHHHHHHccCChHHHHHHHc
Q 043142 10 ATKLVHLYSACDCLHNAHQLFD 31 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~ 31 (512)
...|...+...|++++|+++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555566666666665554
No 341
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.11 E-value=14 Score=29.53 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 323 GHVKLAELALEKLIELE-PHD-AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.+.++++.+++.+.+.. |.. ......|.-++.+.|+++.++++.+...+.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45677788888888633 432 233445667788888888888888877654
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.52 E-value=17 Score=31.50 Aligned_cols=72 Identities=15% Similarity=0.022 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-----CCChhHHHHHHHHHhccCChHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-----DPSEATLVTVISASADIAALPQGR 161 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~pd~~t~~~ll~~~~~~~~~~~a~ 161 (512)
-+.|.+.|-.+...+.-.++....+|...|. ..+.++|+.++.+..+. ++|+..+.+|.+.+.+.++++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456677766766665556666666766666 56677788777776543 366777888888888888877764
No 343
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.45 E-value=1.1e+02 Score=33.41 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLE 66 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 66 (512)
-|..|+..|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999999875
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.39 E-value=13 Score=34.43 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
++++.++..=+..|+-||.+++..++..+.+.+++..|.++...|+
T Consensus 117 q~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 117 QKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.38 E-value=76 Score=31.68 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCcchHHHHH-HHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-GLVPDNFTFPFAL-KACSALSAIEEGRRIHEDVIRNKWETDVFVGAA 113 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (512)
|+..|..-+.-+-+.+.+.+.-.+|.+|... +-.|| .|.... .-+-...+++.|+.++..-++.. +.++..|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d--LWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD--LWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch--hHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 8889999997666677799999999999764 22333 333322 22334445899999998887765 334444443
No 346
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.33 E-value=28 Score=26.62 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=52.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
.....++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||+..|-++-. .+.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34456777777777777653 223333334455677888888854444555677777776654 466777777777777
Q ss_pred hHHCCCCCHHHHH
Q 043142 233 MKDEVQPDHITFV 245 (512)
Q Consensus 233 m~~~~~p~~~t~~ 245 (512)
+...|.|....|.
T Consensus 95 la~~g~~~~q~Fa 107 (116)
T PF09477_consen 95 LASSGSPELQAFA 107 (116)
T ss_dssp HCT-SSHHHHHHH
T ss_pred HHhCCCHHHHHHH
Confidence 7666655555554
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.92 E-value=10 Score=33.17 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+.-++.+.+.+.+.+|+...+.- +-+|.. ..-..++.-++..|++++|..-++-.-++.|.+.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344567788888999988877554 555644 4677788889999999999988888888887653
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.42 E-value=51 Score=30.41 Aligned_cols=144 Identities=11% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH-CCCCCCcchHHHHHHHHhc-cC-ChHHHHHHHHHHHHh-CCCCChhHHHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLE-IGLVPDNFTFPFALKACSA-LS-AIEEGRRIHEDVIRN-KWETDVFVGAALID 116 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 116 (512)
|..|+. ++....+|+.+|+..-. ..+--|......+++.... .+ ....--++...+... |-.++..+-...++
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555542 33445677777773321 2244466666666665544 11 222222333333332 23566667777788
Q ss_pred HHHhCCChHHHHHHHHhhhhC-C--CChhHHHHHHHHHhccCChHHHHHHHH-----HHHHcCCCCchHHHHHHHHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILER-D--PSEATLVTVISASADIAALPQGRELHG-----FSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~-~--pd~~t~~~ll~~~~~~~~~~~a~~~~~-----~~~~~g~~~~~~~~~~li~~y~ 187 (512)
.+++.+++..-.++++..... . -|...|..+|......|+..-.+.+.. .+.+.+++.+.....+|-..+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888888888888887776544 2 356678888888888888776666654 2345566666666666555443
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.47 E-value=16 Score=35.90 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=72.1
Q ss_pred HcCChHHHHH-HHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 043142 219 MHGHSTKALD-LFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 219 ~~g~~~~A~~-~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 296 (512)
..|+.-.|-+ ++.-+..... |+.+...+.+ ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3455544443 4444443333 7766655544 4677888888887776632 2344556777888888888888888
Q ss_pred HHHHHhC-C--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 297 CDLIMQM-R--VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 297 ~~~~~~m-~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
..+-..| + ++ +..............|-++++...++++..++|+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8877776 2 21 2222222333345566778888888888777755
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.91 E-value=34 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043142 124 VVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFE 173 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 173 (512)
++.|...|++....+|+...|..-+..+. +|-++|.++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 56677777777778899888888877663 466777777776643
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.53 E-value=72 Score=29.47 Aligned_cols=108 Identities=13% Similarity=0.172 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHHhHH-CCC-CCHHHHHHHHHHHhc-CC-CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 043142 220 HGHSTKALDLFEKMKD-EVQ-PDHITFVGVLSACSR-GG-LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDE 295 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~-~~~-p~~~t~~~ll~a~~~-~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 295 (512)
+....+|+.+|+.... ..+ -|......++..... .+ ....-.++.+.+...++-.++..+..+.++.+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345677888774432 233 666666666665543 11 2222233344444444445555566666666666666666
Q ss_pred HHHHHHhCC----CCCCHhHHHHHHHHHHHcCCHHH
Q 043142 296 ACDLIMQMR----VKPDPGVWGALLNSCKLHGHVKL 327 (512)
Q Consensus 296 A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~ 327 (512)
-.++++.-. ...|...|..+|......||..-
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 666655441 12233345555555544444443
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.44 E-value=56 Score=28.20 Aligned_cols=87 Identities=9% Similarity=-0.033 Sum_probs=39.1
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVF----VGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAAL 157 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~ 157 (512)
.+...++++.|+..++..+.. +.|.. +--.|.......|.+|+|++.++.....+-.......-..++...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 345556666666555555432 11211 111233344555666666666555443322222222223344445555
Q ss_pred HHHHHHHHHHHHc
Q 043142 158 PQGRELHGFSWRH 170 (512)
Q Consensus 158 ~~a~~~~~~~~~~ 170 (512)
++|+.-|...+..
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555444
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.19 E-value=1.1e+02 Score=31.61 Aligned_cols=243 Identities=12% Similarity=0.039 Sum_probs=107.3
Q ss_pred ccCChHHHHHHHHHHHH-------hCCCCChhHHHHHHHHHHhCC-----ChHHHHHHHHhhhhCC-CChhHHHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIR-------NKWETDVFVGAALIDMYAKCS-----CVVNARQVFDKILERD-PSEATLVTVISAS 151 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~ 151 (512)
...+.+.|..+++.+.+ .| +......+..+|.+.. +.+.|.++|.+..+.+ |+...+...+.-.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 33455555555555544 33 2234444555555432 4455666666555443 3332222222222
Q ss_pred hc-cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHhcCCCCc-hHHHHHH--HHHHHcCCh
Q 043142 152 AD-IAALPQGRELHGFSWRHRFELNVKVKTALVDMYA----KCGLVKVARNLFEQLREKRV-VSWNAMI--TGYAMHGHS 223 (512)
Q Consensus 152 ~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~m~~~~~-~~~~~li--~~~~~~g~~ 223 (512)
.. -.+...|.++|..+.+.|..+ .+-.+..+|. -..+.+.|..++.+..+++. .+.-.+. ..+.. ++.
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 22 134556666666666666322 1222222222 22356667777766665552 2121121 12222 556
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHh----c----CCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc----C
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACS----R----GGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS----G 291 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~----~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g 291 (512)
+.+.-.+..+...+.....+-...+.--. . ..+.+.+..++.+... .-+......|-+.|... .
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----QGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----ccCHHHHhhhcceeeecCCCCC
Confidence 66666666665555433322222221111 1 1244555555555532 22444555555555443 2
Q ss_pred ChHHHHHHHHhCCCCCCHhHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCC
Q 043142 292 RLDEACDLIMQMRVKPDPGVWGALLNSC----KLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 292 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~~p 340 (512)
+.+.|...+.....++....|+ +...+ .... +..|.+.+.++.+.+.
T Consensus 490 d~~~a~~~y~~a~~~~~~~~~n-lg~~~e~g~g~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQGAQALFN-LGYMHEHGEGIKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred ChHHHHHHHHHHHHhhhHHHhh-hhhHHhcCcCcch-hHHHHHHHHHHHhcCc
Confidence 3556666665553333111221 11111 1122 5666666666665543
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.15 E-value=41 Score=31.47 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=50.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCH--hHHHH-HHHHHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR--VKPDP--GVWGA-LLNSCK 320 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~--~~~~~-ll~~~~ 320 (512)
.|..+..+.|+..+|.+.|+.+.++..+..-......|+.++....-+.+...++-+.. ..|.. ..|.+ |+.+-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHH
Confidence 34444556777777777777776553221112233445666666655555555554441 11222 23433 332221
Q ss_pred -----------HcCC---HHHHHHHHHHHHhcCCCCCc
Q 043142 321 -----------LHGH---VKLAELALEKLIELEPHDAG 344 (512)
Q Consensus 321 -----------~~g~---~~~A~~~~~~~~~~~p~~~~ 344 (512)
+.|- -..|.+...++.+.+|.-|.
T Consensus 360 Va~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 360 VSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcH
Confidence 1121 23466777788888887653
No 355
>PRK10941 hypothetical protein; Provisional
Probab=73.73 E-value=18 Score=33.30 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+---.-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44667778899999999999999999999999877777888899999999999888877654
No 356
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.69 E-value=2.2e+02 Score=34.63 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=92.3
Q ss_pred HHHHHHHccCChHHHHHHHccC----CCC--CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 12 KLVHLYSACDCLHNAHQLFDRI----PQR--NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
.|..+--+|+.+..|...|++- .+. ...-+-.+...|+.-++++....+...-.. .| ++..-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 3444556788899999888883 222 222344445588888999887777664111 12 23344445667
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHH-HHHHhccCChHHHHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTV-ISASADIAALPQGREL 163 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~l-l~~~~~~~~~~~a~~~ 163 (512)
.|++..|...|+.+++.+ ++....++.+++.....|.++.+.-..+......++. ..++++ ..+.=+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 799999999999998775 4446677777776667788888877776665544333 233332 2233456666666655
Q ss_pred HH
Q 043142 164 HG 165 (512)
Q Consensus 164 ~~ 165 (512)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 54
No 357
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.55 E-value=23 Score=23.22 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 346 YVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
...++-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456778899999999999999998764
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.03 E-value=6.9 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.7
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 348 ILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57888999999999999999887544
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.99 E-value=19 Score=27.12 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043142 47 AYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK 103 (512)
Q Consensus 47 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 103 (512)
.+...|++++|+.+.+.+ ..||...|..+- -.+.|-.+....-+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 445556666666665544 245554443332 234455554555555555544
No 360
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.66 E-value=37 Score=24.88 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKAL 227 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 227 (512)
+.++++...+.|+- +......+-.+-...|+.+.|.+++..+. ++...+..+++++-..|+..-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34566666666632 22222322222235688888999999888 88888888888888888765554
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.49 E-value=15 Score=36.99 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHhHHHHHHHHHHHcCCHHHHH
Q 043142 254 GGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV-KPDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
.|+...|...+.... ...| .-.....|...+.+.|...+|-.++.+. .+ ...+.++-.+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 345555555554443 2233 1122333444445555555555554433 11 122335555556666666666666
Q ss_pred HHHHHHHhcCCCCCchHHHHH
Q 043142 330 LALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+.|+++++.+|+++..-+.|.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHH
Confidence 666666666666655544443
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.04 E-value=7.5 Score=20.93 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhhhCC
Q 043142 111 GAALIDMYAKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 138 (512)
+..+...|...|+++.|...|....+.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4445555556666666666665554443
No 363
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.90 E-value=6.5 Score=31.33 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=21.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
.|.-.+|..+|+.|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45556777788888888877775 66666554
No 364
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=69.75 E-value=72 Score=27.44 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=53.5
Q ss_pred HhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC------
Q 043142 200 EQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI------ 273 (512)
Q Consensus 200 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------ 273 (512)
++-.++-.+.|..+..+-++.-+.+++-..|- ...=.+++..|.+.-++.++.++++.+.+ ..+
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L---------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL---------GRIGISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhcc
Confidence 33333344555555555555444444322221 11223556677777788888888777743 222
Q ss_pred --------CCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 274 --------DPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 274 --------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
.|.-...|.....+.++|.+|.|+.++++-
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 223345566677778888888888877765
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.62 E-value=9.8 Score=21.12 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 323 GHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
|+.+.|..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788888888888888877777766554
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.19 E-value=1.3e+02 Score=30.23 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=103.5
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+.|....-++++.+...-.+.-...+..+|...+-+...|..++..|... ..+.-..+++++++..+. |++....|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44666667788888888888888888888888887888888888888877 556667778877776543 4445556666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCc---------hHHHHHHHHHHHcCChHHHHHHHHHhHHC-CC-CCHHHHHHHHHHHhc
Q 043142 185 MYAKCGLVKVARNLFEQLREKRV---------VSWNAMITGYAMHGHSTKALDLFEKMKDE-VQ-PDHITFVGVLSACSR 253 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-p~~~t~~~ll~a~~~ 253 (512)
-|-+ ++.+++...|.++..+=+ ..|.-++..- ..+.+..+.+..+++.. |. --.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6665 777888777776542211 2455544311 23445555555555433 22 333444445556677
Q ss_pred CCCHHHHHHHHHHHHH
Q 043142 254 GGLFDEGRMFFESMVR 269 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~ 269 (512)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776653
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.13 E-value=31 Score=28.20 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCC-----CCCCcchHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIG-----LVPDNFTFPFALKACSALSA-IEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
.|+++.-.+..+++.-.+.+++.+.... -..+..+|..++.+.++... --.+..+|..+.+.+.+.++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5666666666666666666666553211 02355678888887766555 34466777777776777777778778
Q ss_pred HHHHHhC
Q 043142 115 IDMYAKC 121 (512)
Q Consensus 115 i~~~~~~ 121 (512)
+.+..+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776554
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.56 E-value=14 Score=27.34 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..+++.++.+|.|...-..+...+...|++++|.+.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555566677777777777777777777777777776665543
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.03 E-value=1.1e+02 Score=31.15 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--Cc---hHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 180 TALVDMYAKCGLVKVARNLFEQLREK--RV---VSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
..|+.-|.+.+++++|..++..|.-. +. .+.+.+.+.+.++.-.++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35677899999999999999888632 22 33444555555555445555555555433
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.50 E-value=20 Score=31.94 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=22.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.+.+..+++.+.+--++++++.|+.......|.........+++|+..+.+.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444443
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.90 E-value=1.5e+02 Score=28.82 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=51.2
Q ss_pred CHhHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hccChhHHHHHHHHHHh
Q 043142 308 DPGVWGAL---LNSCKLHGHVKLAELALEKLIELEPH-DAGNYVILSNIYA-RAANWEGVAKLRKLMID 371 (512)
Q Consensus 308 ~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 371 (512)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||-.-...|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455544 45578899999999999999999998 8888788888885 78888888888887654
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.82 E-value=1.1e+02 Score=27.18 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.+..++.+.+.+..++|+...++-.+..+.|..+-..++..++-.|++++|..-++...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34456667777777888887777777766666666667777788888888877666553
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.70 E-value=1.3e+02 Score=27.99 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHh
Q 043142 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDK 133 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 133 (512)
.+|+++|..++... --..+-+.++.++...-+..+|...|..
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHH
Confidence 57888888888763 2234455677777777777777666544
No 374
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.54 E-value=1.3e+02 Score=28.07 Aligned_cols=199 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred CChhHHHHHHH--HHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 106 TDVFVGAALID--MYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 106 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
|...+++-||+ .|...+--++..+++.-+..-.++...=..++.+.. ..+|..|.......+=
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~---------------l~nGt~~~tvl~~L~~ 173 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALL---------------LSNGTLPATVLQSLLN 173 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---------------HhCCCCCHHHHHHHHH
Q ss_pred HHHHhcC-CHHHHHHHHHh-cCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC-----
Q 043142 184 DMYAKCG-LVKVARNLFEQ-LREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL----- 256 (512)
Q Consensus 184 ~~y~~~g-~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~----- 256 (512)
+-+.+.| -..-|.++|+. +.++|+ |.+++++.+.+.-+.-+++| +|+..+--.....+...|.
T Consensus 174 d~LVkeGi~l~F~~~lFk~~~~Ek~i---~~lis~Lrkg~md~rLmeff-------Ppnkrs~E~Fak~Ft~agL~elve 243 (412)
T KOG2297|consen 174 DNLVKEGIALSFAVKLFKEWLVEKDI---NDLISSLRKGKMDDRLMEFF-------PPNKRSVEHFAKYFTDAGLKELVE 243 (412)
T ss_pred hhHHHHhHHHHHHHHHHHHHHhhccH---HHHHHHHHhcChHhHHHHhc-------CCcchhHHHHHHHHhHhhHHHHHH
Q ss_pred ---------------------------HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH
Q 043142 257 ---------------------------FDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP 309 (512)
Q Consensus 257 ---------------------------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 309 (512)
+++......+-.++ .--|+..+...+-+.....+.|.+-.++...--++ ..
T Consensus 244 y~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-hl 321 (412)
T KOG2297|consen 244 YHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-HL 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-HH
Q ss_pred hHHHHHHHHHHHcCCHHHHHHH
Q 043142 310 GVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
.+|.-|+.+++..|+.+..+-+
T Consensus 322 K~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HhhhHHHHHHhcCChHHHHHHH
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.21 E-value=16 Score=22.88 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=7.8
Q ss_pred HHhccCChHHHHHHHHHHH
Q 043142 82 ACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~ 100 (512)
+|...|+.+.|+++++.++
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3344444444444444433
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.99 E-value=2.1e+02 Score=30.23 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=87.7
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh-------HHHHHHHHHHHHhCCCCChh
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI-------EEGRRIHEDVIRNKWETDVF 109 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 109 (512)
+...|- +|--+.+.|.+++|.++..+.... .......|...+..+....+- +....-|++.++.....|++
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 445664 555778899999999988555443 444556788888888765332 34445555555443222433
Q ss_pred ---HHHHHHHHHHhCCChHHHH-HHHHhhhhCCCChhHHHHHHHHHhccC---------ChHHHHHHHHHHHHcCCCCch
Q 043142 110 ---VGAALIDMYAKCSCVVNAR-QVFDKILERDPSEATLVTVISASADIA---------ALPQGRELHGFSWRHRFELNV 176 (512)
Q Consensus 110 ---~~~~li~~~~~~g~~~~A~-~~~~~m~~~~pd~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~g~~~~~ 176 (512)
+|..+ .+|.-...-. .++..+. ...|..|.-.-.... .++.-.......-..-+.+ .
T Consensus 189 K~AvY~il----g~cD~~~~~~~~V~~tiE-----D~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 189 KRAVYKIL----GRCDLSRRHLPEVARTIE-----DWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHHHHHHH----HT--CCC-S-TTC--SHH-----HHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHHHHHH----hcCCccccchHHHhCcHH-----HHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-c
Confidence 33333 2322211100 1111110 011211111111110 0111111111111222333 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHh
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQL--REKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACS 252 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~ 252 (512)
.-.-....++.-+|+++.|.+.+-+. ...+.+.....+.-|.-.+-..... ..+..... |...-|..||..|.
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 11112344556689999999998872 2223444433333222111111111 22222211 22266778888877
Q ss_pred c---CCCHHHHHHHHHHHH
Q 043142 253 R---GGLFDEGRMFFESMV 268 (512)
Q Consensus 253 ~---~g~~~~a~~~~~~~~ 268 (512)
+ ..+..+|.++|-.+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5 467888888888774
No 377
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.19 E-value=52 Score=25.36 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888888888888888776
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.07 E-value=1.2e+02 Score=27.15 Aligned_cols=71 Identities=17% Similarity=0.092 Sum_probs=35.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL 321 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 321 (512)
++.++...|+.+.|..+++.+. ..-.+......++.. ..++.+.+|..+-+...-.-....|..++..+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 5555555666666666666542 111122222333333 4456677777666665321113355556655553
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.05 E-value=2.5e+02 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ 35 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~ 35 (512)
-|..|+..|...|.-++|+++|.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 578899999999999999999988765
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.86 E-value=71 Score=29.31 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHH--CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 043142 45 IRAYAWNGPYEVAIELYYRLLE--IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK-- 120 (512)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 120 (512)
|.+++..|++.+++...-+--+ ..++|.. ...-|-.|++.+++..+.++-..-+...-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5677777777776655433321 1233322 333344466777777666666655543222233346666655544
Q ss_pred ---CCChHHHHHHH
Q 043142 121 ---CSCVVNARQVF 131 (512)
Q Consensus 121 ---~g~~~~A~~~~ 131 (512)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666655
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.75 E-value=2.4e+02 Score=30.57 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=104.8
Q ss_pred HhcCCHHHHHHHHHhcC----CCCc-------hHHHHHHHH-HHHcCChHHHHHHHHHhHHCCC-----CCHHHHHHHHH
Q 043142 187 AKCGLVKVARNLFEQLR----EKRV-------VSWNAMITG-YAMHGHSTKALDLFEKMKDEVQ-----PDHITFVGVLS 249 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~-----p~~~t~~~ll~ 249 (512)
....++.+|..+..+.. .++. ..|+++-.. ....|++++|.++-+.....-+ +..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44677888877776543 3321 356655433 3446778888888777654422 45556666777
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHH-----HHHHhccCChHH--HHHHHHhC-----CCCC----CHhHHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCM-----VDLLGHSGRLDE--ACDLIMQM-----RVKP----DPGVWG 313 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~--A~~~~~~m-----~~~p----~~~~~~ 313 (512)
+..-.|++++|..+.....+. .-.-+...+... ...+...|+... .+..|... +-+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999888776665322 112233332222 223445563222 22233222 1112 123444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCc---hHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceee
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELE----PHDAG---NYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSW 382 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 382 (512)
.++.++.+ .+.+..-.....+.+ |.... .+..|+..+...|+.++|...++++........+...|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 44444444 455555444444432 32211 22367788888999999999999887765544444444
No 382
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.11 E-value=1.2e+02 Score=27.07 Aligned_cols=56 Identities=23% Similarity=0.218 Sum_probs=33.0
Q ss_pred HhccCChHHHHHHHHhCC---CCCCHhHHHH---HHHH---HHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 287 LGHSGRLDEACDLIMQMR---VKPDPGVWGA---LLNS---CKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~---~~p~~~~~~~---ll~~---~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
-+..+++.+|+++|++.. +..+..-|.. ++.+ +....|.-.+...+++..+++|.-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 345677778888877762 2222223321 1211 223366777888888888888873
No 383
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.97 E-value=5.2 Score=37.34 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=56.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~ 329 (512)
..|.++.|+..|-..++ +.| ....|.--.+.+.+.++...|++-+... .+.||.. .|-.--.+.+..|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~---lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE---LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccc---cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34666666666666552 233 3444444445555555555555544433 3444443 3433344445566666666
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 330 LALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..++.+.+++-+. .+-..|-...-..+..++-...+++-+
T Consensus 203 ~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 6666666655321 122234444444555555444444443
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.50 E-value=1.4e+02 Score=27.41 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR 253 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~ 253 (512)
-++.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |...-..++ -|..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~-------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA-------------DLFIARAVL-QYLC 153 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-------------HHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-------------hHHHHHHHH-HHHH
Confidence 35677788889999999999998887544333333332233222223332222 222222233 3455
Q ss_pred CCCHHHHHHHHHHHHHh
Q 043142 254 GGLFDEGRMFFESMVRD 270 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~ 270 (512)
.+++..|...+....+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67888888887777644
No 385
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.75 E-value=55 Score=26.69 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=45.8
Q ss_pred ChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 292 RLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 292 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
.-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|++...-....++|...|.
T Consensus 56 p~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 56 PEEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3466777777775 233444455667789999999999999999999998888888887766554
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.28 E-value=53 Score=26.02 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=21.4
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 61 YYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 61 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
++.+...++.|+.......+++|.+.+|+..|.++++-+.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444455555555555555555555555555555443
No 387
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.02 E-value=14 Score=39.17 Aligned_cols=97 Identities=16% Similarity=0.272 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 043142 220 HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDL 299 (512)
Q Consensus 220 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 299 (512)
+.++++.+.+.+... .+- .++|..+.+.|-.+-|+.+.+.=..+ .+....+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~---LvG----qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSN---LVG----QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcC---ccc----HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHH
Confidence 445566555544322 121 13444556667776666654433222 2345678999999998
Q ss_pred HHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 300 IMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 300 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
-++.. |..+|..|......+|+.+-|+..|++....+
T Consensus 666 akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 666 AKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 88775 67799999999999999999999998876544
No 388
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.45 E-value=1.8e+02 Score=28.16 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=46.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHh-ccCChHHHHHHHHhCCC---------CCCHhHHHHHH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLG-HSGRLDEACDLIMQMRV---------KPDPGVWGALL 316 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~---------~p~~~~~~~ll 316 (512)
..+.+.|-+..|.++.+-+. .+.| |+.....+|+.|+ ++++++--+++.+.... -|+ ..|+..+
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL 186 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL 186 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH
Confidence 34556666666666666554 3444 3444445555553 45555555555554321 121 2344333
Q ss_pred HHHHHcCC--------------HHHHHHHHHHHHhcCC
Q 043142 317 NSCKLHGH--------------VKLAELALEKLIELEP 340 (512)
Q Consensus 317 ~~~~~~g~--------------~~~A~~~~~~~~~~~p 340 (512)
.-+...+. .+.|.+.+.+++..-|
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33332222 3778888888777766
No 389
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.41 E-value=2.1e+02 Score=28.74 Aligned_cols=321 Identities=10% Similarity=0.015 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHhcC-CchHHHHHHHHHHHCCC-CCCcchH---HHHHHHHhccCChHHHHHHHHHHHHhCC---CCChhH
Q 043142 39 FLWNVLIRAYAWNG-PYEVAIELYYRLLEIGL-VPDNFTF---PFALKACSALSAIEEGRRIHEDVIRNKW---ETDVFV 110 (512)
Q Consensus 39 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~-~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~ 110 (512)
.+++.|...|.+.. .+..|..++++.++..- .| ..+. .-++....-..++..|.+++. .|. .+-...
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p-~wsckllfQLaql~~idkD~~sA~elLa----vga~sAd~~~~~ 163 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWSCKLLFQLAQLHIIDKDFPSALELLA----VGAESADHICFP 163 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHhhhccchhHHHHHh----ccccccchhhhH
Confidence 45666777787766 78888889988876321 12 1122 223445556678888877743 332 122222
Q ss_pred HHHHHHHH------HhCCC---hHHHHHHHHhhhhCC-CChh------HH--HHHHHHHhccCChHHHHHHHHHHHHc--
Q 043142 111 GAALIDMY------AKCSC---VVNARQVFDKILERD-PSEA------TL--VTVISASADIAALPQGRELHGFSWRH-- 170 (512)
Q Consensus 111 ~~~li~~~------~~~g~---~~~A~~~~~~m~~~~-pd~~------t~--~~ll~~~~~~~~~~~a~~~~~~~~~~-- 170 (512)
|.-++-.. .-..+ +..+.....+|.+.. +|.. .| +.-+.-|...|+...++...+++.+.
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 32222111 11223 344444445554432 3321 12 22233445677777777777666542
Q ss_pred -CCC------------CchHHHHHHHH----HH---------HhcCCHHH-------HHHHHHhcCCCCc--h-------
Q 043142 171 -RFE------------LNVKVKTALVD----MY---------AKCGLVKV-------ARNLFEQLREKRV--V------- 208 (512)
Q Consensus 171 -g~~------------~~~~~~~~li~----~y---------~~~g~~~~-------A~~~~~~m~~~~~--~------- 208 (512)
+.+ |.+..+.-+.. ++ .-.|-+++ |....++.++.|. .
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 211 11111111110 00 01233444 4444444555441 1
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-
Q 043142 209 -SWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHI--------TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS- 276 (512)
Q Consensus 209 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 276 (512)
....++..-.-.|++.+|++-...|.+... |... .-..+...|...+.++.|+.-|....+.. -.-|
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl 402 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDL 402 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHH
Confidence 122222233447999999999999987644 5421 11223334566789999999888876542 1222
Q ss_pred -hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHH--------HHHH--HHHcCCHHHHHHHHHHHHhcCC-C---
Q 043142 277 -VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGA--------LLNS--CKLHGHVKLAELALEKLIELEP-H--- 341 (512)
Q Consensus 277 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--------ll~~--~~~~g~~~~A~~~~~~~~~~~p-~--- 341 (512)
...-..+.-.|.+.|+-+.-.++++.++ .|+..++.+ ++.+ ....+++.+|...+++.++... .
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~ 481 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN 481 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence 2333456667899999888888888885 232222211 1122 2467899999999999887541 1
Q ss_pred --CCchHHHHHHHHHhccChhHHHHHH
Q 043142 342 --DAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 342 --~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
..-....|...+...|+..++.+..
T Consensus 482 rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 1223445667777778877776554
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.00 E-value=47 Score=28.74 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=27.3
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 304 RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 304 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
...|+..++..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467777777777777777777777777777777777
No 391
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.42 E-value=1.3e+02 Score=26.10 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=22.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCchH--HHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 184 DMYAKCGLVKVARNLFEQLREKRVVS--WNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
......|.+++|.+.++....++-.+ -..-...+...|+-++|..-|.+..+.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444445555555444444333211 111223344444444554444444433
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.89 E-value=33 Score=25.11 Aligned_cols=35 Identities=6% Similarity=-0.014 Sum_probs=15.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVV 125 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 125 (512)
.|+.+.|.+++..+. .| +..|...+.++-..|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 344555555555444 22 123444444444444433
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.80 E-value=1.3e+02 Score=27.77 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred HHHHHHcCChHHHHHHHHHhHHC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc--
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDE--VQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH-- 289 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 289 (512)
|.+++..|++.+++...-+--+. ..|-.+ .-.-|-.|++.+....+.++-....+..+ .-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI-leLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI-LELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH-HHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHH
Confidence 56677777777776655443222 122222 22223356777887777777776654321 2234447777766654
Q ss_pred ---cCChHHHHHHHHh
Q 043142 290 ---SGRLDEACDLIMQ 302 (512)
Q Consensus 290 ---~g~~~~A~~~~~~ 302 (512)
.|.+++|+++...
T Consensus 168 LlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVG 183 (309)
T ss_pred HhccccHHHHHHHHhc
Confidence 5888888887743
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.77 E-value=77 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 327 LAELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 327 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
.+.++|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7788888887644 55667888888888888999998888864
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.61 E-value=2e+02 Score=28.06 Aligned_cols=93 Identities=12% Similarity=-0.041 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCCcchHHHHHHHHhccCChHHHHHHHHHHHHh---------CCCCCh
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGL--VPDNFTFPFALKACSALSAIEEGRRIHEDVIRN---------KWETDV 108 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------g~~~~~ 108 (512)
.+.-+...|...|+++.|++.|.+.+.--- +-....|..+|..-.-.++|......-.+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 455566667777777777777777543210 111123444555555566665555544444332 123334
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
..+..|.....+ ++..|.+.|-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 445555554443 666666665444
No 396
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=56.31 E-value=3.2e+02 Score=30.37 Aligned_cols=309 Identities=12% Similarity=0.070 Sum_probs=155.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHH-------HHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHH
Q 043142 42 NVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPF-------ALKACSALSA---IEEGRRIHEDVIRNKWETDVFVG 111 (512)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~ 111 (512)
-++=+++.....++.|+..|++...+ .+--...|.+ ++.-....++ +++|..-|+.+...--.|=....
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 34457788888889999999888764 2212223333 2333333444 56666666666543223333333
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH---Hh
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY---AK 188 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~ 188 (512)
-+ -.|-+.|++++-.+-+.-..++-|.-.-...+-. ....++|+...+.. ..++.-++-+. -+
T Consensus 558 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 558 KA--LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD--------HLVYRLHESLYKHR----REALVFMLLALWIAPE 623 (932)
T ss_pred HH--HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH--------HHHHHHHHHHHHHH----HHHHHHHHHHHHhCcc
Confidence 33 3588889998888888777766543322221111 01122222222221 11111111111 11
Q ss_pred cCCHHHHHHHHHhcCCC---------C--c----hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc
Q 043142 189 CGLVKVARNLFEQLREK---------R--V----VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR 253 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~---------~--~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~ 253 (512)
.-...+-+++|+.+..+ | + .+--.+.-+|- .|..---.++|++..+. +|-.+...+....+.
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 700 (932)
T PRK13184 624 KISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFW-SGFTPFLPELFQRAWDL--RDYRALADIFYVACD 700 (932)
T ss_pred cccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHH-hcCchhhHHHHHHHhhc--ccHHHHHHHHHHHHH
Confidence 22223334455544321 1 1 11111222222 23444445555555432 555666666667778
Q ss_pred CCCHHHHHHHHHHHHHhc---CCCCC--------hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHh--HHHHHHHHHH
Q 043142 254 GGLFDEGRMFFESMVRDY---HIDPS--------VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPG--VWGALLNSCK 320 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~---~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~--~~~~ll~~~~ 320 (512)
.|.++-+.+..+.+.+.+ ...-+ ...|-.=+.++.....++++.+.+...+ |... .+..+..-+.
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 778 (932)
T PRK13184 701 LGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD--PTLILYAFDLFAIQAL 778 (932)
T ss_pred hccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC--HHHHHHHHHHHHHHHH
Confidence 888888777766664321 11001 1123333556666667777777666653 2222 4444444455
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 321 LHGHVKLAELALEKLIELEPHD---AGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
.+++.+.-..+.+.+....++. ......-+.+|.-..+|++|-++++.-.
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (932)
T PRK13184 779 LDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP 831 (932)
T ss_pred HhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCC
Confidence 5666666666665555444322 1233456777888888999888886543
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.51 E-value=50 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 272 HIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 272 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
...|++.+|..++..+...|+.++|.++.+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566667777777777777777776666666
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.46 E-value=94 Score=23.95 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHccCChHHHHHHHccCCC----------CCchHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQ----------RNLFLWNVLIRAYAWNGPYEVAIELYYRLLE 66 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 66 (512)
++|+..|... +......++..-.. ....-|..|+..|...|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4666666666 54444444432100 0123477788888888888888888887765
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.18 E-value=27 Score=25.01 Aligned_cols=46 Identities=4% Similarity=-0.012 Sum_probs=19.2
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 298 (512)
+....++|+..|...+++..-.|+ -.+...|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444433211111 1234444445555555444443
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.89 E-value=31 Score=24.73 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=27.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhccChhHHHHH
Q 043142 321 LHGHVKLAELALEKLIELEPHDAG---NYVILSNIYARAANWEGVAKL 365 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~ 365 (512)
...+.+.|+..++++++..++.+. ++-.|+.+|...|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777765544333 334566667777777776655
No 401
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.31 E-value=88 Score=27.69 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHcCCH-------HHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 315 LLNSCKLHGHV-------KLAELALEKLIELE--PHD----AGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 315 ll~~~~~~g~~-------~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+.-.|...|+. ..|.+.|+++.+.+ |.. ......++..+.+.|+.++|.+.|.++...+
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33345555653 45555555555543 222 3455567888899999999999999987654
No 402
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.25 E-value=1e+02 Score=27.71 Aligned_cols=58 Identities=7% Similarity=-0.056 Sum_probs=47.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
-+++...|++-++++...+++...|.|..+|..-..+.+..=+.++|..=|....+..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3455677899999999999999999999888888888777777788888887776654
No 403
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=53.68 E-value=4.5 Score=27.64 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=16.6
Q ss_pred ceEEEeeCCcccccccccccC
Q 043142 488 REITVRDVNRYHHFKDGICSC 508 (512)
Q Consensus 488 ~~~~~~d~~~~h~~~~g~csc 508 (512)
+.|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 457788999999999998653
No 404
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=52.99 E-value=3.5e+02 Score=29.75 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 292 (512)
.|..++..-..-....|++..|.+++.+++++.+-.++...|-.+++.+...|.
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 344444333334444566666666666666655555555555555555555543
No 405
>PRK10941 hypothetical protein; Provisional
Probab=52.90 E-value=1.6e+02 Score=27.16 Aligned_cols=60 Identities=8% Similarity=-0.104 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRD 270 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 270 (512)
+.+-.+|.+.++++.|+...+.+..-.+.|..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 334445555555555555555555544433333333333455555555555555555444
No 406
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.40 E-value=2.1e+02 Score=26.98 Aligned_cols=30 Identities=17% Similarity=-0.027 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 140 SEATLVTVISASADIAALPQGRELHGFSWR 169 (512)
Q Consensus 140 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (512)
+...-..++.+.+...+.+...++++.+..
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 333344444444444444444444444444
No 407
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.90 E-value=1.8e+02 Score=26.17 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=70.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHH-HHhccCChHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDV-FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVIS-ASADIAALPQGRE 162 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~-~~~~~~~~~~a~~ 162 (512)
....++.|...+.+.+.. .|+. .-|+.-+-.|.+..+++.+..--.+..+.+||.+--...+. +......++.|..
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345566666666655554 4554 45566677778888888888777777777777765444443 3466677777777
Q ss_pred HHHHHHH----cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 163 LHGFSWR----HRFELNVKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 163 ~~~~~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
.+.+... +.+++.......|..+--+.-.+.++.++.+.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7766633 33455555666666655444455555554443
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.79 E-value=21 Score=32.95 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFP 77 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 77 (512)
-||.-|....+.|++++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36688888888888888888888888887654333443
No 409
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.62 E-value=2.9e+02 Score=28.40 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=40.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hccChhHHHHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPH-DAGNYVILSNIYA-RAANWEGVAKLRKLMI 370 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 370 (512)
....+.|-+.-|.++.+-+++++|. ||-....+++.|+ ++.+++-.+++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456778888888888888888887 7777777788775 6677777777777664
No 410
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.57 E-value=1.3e+02 Score=24.57 Aligned_cols=80 Identities=6% Similarity=0.100 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCC-------CChhHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchHHHHH
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERD-------PSEATLVTVISASADIAA-LPQGRELHGFSWRHRFELNVKVKTA 181 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 181 (512)
..|.+++-....+++.....+++.+.-.. .+..+|..++.+.++... --.+..+|..+.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34555555556666666666666554333 345678888888876666 4457788888888888888888888
Q ss_pred HHHHHHhc
Q 043142 182 LVDMYAKC 189 (512)
Q Consensus 182 li~~y~~~ 189 (512)
++.+..+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88876543
No 411
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.32 E-value=1e+02 Score=24.47 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=47.8
Q ss_pred HHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 225 KALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 225 ~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+..+-++....-.+ |++...-.-+.||.+.+++..|.++|+.++.+ ..+.-..|-.++ ++-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 33444455555566 99999999999999999999999999998644 344344566555 3444556666
Q ss_pred C
Q 043142 304 R 304 (512)
Q Consensus 304 ~ 304 (512)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 5
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.78 E-value=2e+02 Score=26.55 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCC-CCHHH
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQ-PDHIT 243 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t 243 (512)
+.+-..+.+++++|+..+.++...|. .|..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34445667778888888888877776 55544
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.71 E-value=2.5e+02 Score=27.44 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CchHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 177 KVKTALVDMYAKCGLVKVARNLFEQLREK------RVVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 177 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
....-+.+-|..||+++.|.+.|.+...- -+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667888899999999999999885532 134566666666667777777776666543
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.92 E-value=1.2e+02 Score=26.06 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDV-------FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISAS 151 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~ 151 (512)
++.|..+++.+.+.-..|+. .+--..+-.|.+.|.+++|.+++++..+ +|+....-.-+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 56677777777665422211 1223345578889999999999998877 56655544444333
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.35 E-value=1.5e+02 Score=30.37 Aligned_cols=133 Identities=16% Similarity=0.074 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc-cCChHHHHHHHHhC-CCCCC--HhHH
Q 043142 239 PDHITFVGVLSACSRG--GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH-SGRLDEACDLIMQM-RVKPD--PGVW 312 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p~--~~~~ 312 (512)
|+..|.-.++.-...- ..-+-|-.++..|. + .+.|--...| +...|-| .|+...|...+... ...|. .+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 7777766666544432 22344555666553 2 3333221222 2334444 58888898888766 22332 2244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 313 GALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 313 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..|.......|-...|-.++.+.+.+....|-++..+.++|....+.+.|++.|+...+...
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 45666666777788899999999988877888999999999999999999999988776543
No 416
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.19 E-value=76 Score=23.17 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHH
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 226 (512)
..++..+.+.|+-... -.-...+..-+.+.|.++++.++.++..+|.++..++-..|+..-|
T Consensus 19 ~~v~~~L~~~~Vlt~~----~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPD----MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHH----HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3466667776643221 2222234556788899999999999999999999988887765544
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.93 E-value=1.3e+02 Score=31.26 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCC--CCCCcchHHHHHHHHhccCCh
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLEIG--LVPDNFTFPFALKACSALSAI 89 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~ 89 (512)
+|..+|..+|++..+.++++...... -+.=...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45566666666666666666554431 111112344445555555544
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.36 E-value=74 Score=23.63 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC----C-----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 320 KLHGHVKLAELALEKLIELEPH----D-----AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+.|++..|.+.+.+....... . ..+...+.......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4667777777766666543211 1 12233466677788999999988888764
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.88 E-value=1.5e+02 Score=23.63 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 159 QGRELHGFSWRHRFELN-VKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 159 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
.+..+|..|..+|+... ...|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888876544 45677788888889999999998864
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.31 E-value=84 Score=23.34 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455677899999999999988753
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.46 E-value=1.2e+02 Score=31.43 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=11.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+|+.+|...|++..+.++++.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 34444444555544444444443
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.39 E-value=20 Score=35.33 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=69.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcC
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYT-CMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHG 323 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g 323 (512)
-+......+.++.|..++.+++ .+.|+...|- -=..++.+.+++..|+.-+... ...|... .|-.=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3455667788999999999998 4588654443 3347888999998887765554 5556543 4544456677778
Q ss_pred CHHHHHHHHHHHHhcCCCCCc
Q 043142 324 HVKLAELALEKLIELEPHDAG 344 (512)
Q Consensus 324 ~~~~A~~~~~~~~~~~p~~~~ 344 (512)
.+.+|...|+......|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 889999999999999998864
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.38 E-value=65 Score=20.46 Aligned_cols=31 Identities=19% Similarity=0.068 Sum_probs=15.6
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 50 WNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555554444444433
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.22 E-value=5e+02 Score=29.36 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHH-----------------------CCCCCCcch-----HHHHHHHHhccCChHHHHH
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLE-----------------------IGLVPDNFT-----FPFALKACSALSAIEEGRR 94 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~-----------------------~g~~p~~~t-----~~~ll~~~~~~~~~~~a~~ 94 (512)
.+..+|...|...+|+..|.+... .|-.|...- |-.+++.+-+.+..+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHHh---CCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChH------------H
Q 043142 95 IHEDVIRN---KWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALP------------Q 159 (512)
Q Consensus 95 ~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~------------~ 159 (512)
+-...++. ..+.-..+++.+.+.....|.+-+|.+.+-+-+...........++......|.++ +
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~e 1084 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQE 1084 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHH
Q ss_pred HHH-HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 043142 160 GRE-LHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198 (512)
Q Consensus 160 a~~-~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 198 (512)
... +++..-++........|+.|-..+...+++.+|-.+
T Consensus 1085 ve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1085 VEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
No 425
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.86 E-value=2.5e+02 Score=25.73 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=100.7
Q ss_pred ChHHHHHHHHhhhhCCCCh-----hHHHHHHHHHhccCChHHHHHHHHHHHH---cCC--CCchHHHHHHHHHHHhcCCH
Q 043142 123 CVVNARQVFDKILERDPSE-----ATLVTVISASADIAALPQGRELHGFSWR---HRF--ELNVKVKTALVDMYAKCGLV 192 (512)
Q Consensus 123 ~~~~A~~~~~~m~~~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~--~~~~~~~~~li~~y~~~g~~ 192 (512)
+.++|+.-|++..+..+.. -++-.++....+.+++++....|.+++. +.+ ..+....|++++.-+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4455555555554443322 1223344455555666555555554432 111 23455677777777766666
Q ss_pred HHHHHHHHhcC-----CCCc----hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-----CC-------HHHHHHHHHHH
Q 043142 193 KVARNLFEQLR-----EKRV----VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-----PD-------HITFVGVLSAC 251 (512)
Q Consensus 193 ~~A~~~~~~m~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----p~-------~~t~~~ll~a~ 251 (512)
+.-...|+.-. .++. .+-.-+...|...+.+.+...+++++.+... .| ...|..-+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 66555554322 1222 2334466677777778788888887765422 11 23466667778
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHH----HHHHhccCChHHHH-HHHHhC
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCM----VDLLGHSGRLDEAC-DLIMQM 303 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~-~~~~~m 303 (512)
....+-..-..++++.+....--|.+.....+ ..+..+.|++++|- ++|+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 88888888888888776443444555433322 22445678888874 344444
No 426
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.54 E-value=2.5e+02 Score=28.60 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLL 65 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~ 65 (512)
...++.-|.+.+++++|..++..|-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3456667777777777777777763
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.17 E-value=3.2e+02 Score=26.75 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=33.5
Q ss_pred HHHcCChHHHHHHHHHhHHCCC-CCHH--HHHHHHHHHh--cCCCHHHHHHHHHHHHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQ-PDHI--TFVGVLSACS--RGGLFDEGRMFFESMVR 269 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~-p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 269 (512)
+.+.+++..|.++|+++... + ++.. .+..+..+|. ..-++++|...++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44678888888888888776 5 3333 2333334433 46677888888887754
No 428
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.99 E-value=3.1e+02 Score=26.64 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHH------------HHHHHHcCCHHHHHHHHHHHHhc--CCCC--
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL------------LNSCKLHGHVKLAELALEKLIEL--EPHD-- 342 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~--~p~~-- 342 (512)
.-..|...+-.+|++++|.+++.+.+ +.||+++ ++-|...+|+-.|.-+-+++... +.++
T Consensus 133 lTk~L~~ike~~Gdi~~Aa~il~el~----VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 133 LTKMLAKIKEEQGDIAEAADILCELQ----VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 33456677788999999999998875 3344443 45678889999998888877653 2222
Q ss_pred ---CchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEEE
Q 043142 343 ---AGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEV 385 (512)
Q Consensus 343 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~ 385 (512)
...|..++....+.+.+=.+-+.++..-+.|-.+...--|+.+
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 2478888999989999999999999998876655433346543
No 429
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.79 E-value=3.4e+02 Score=26.69 Aligned_cols=209 Identities=10% Similarity=-0.010 Sum_probs=102.7
Q ss_pred HHHHccCChHHHHHHHccCCCCCc---hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCCh
Q 043142 15 HLYSACDCLHNAHQLFDRIPQRNL---FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF--TFPFALKACSALSAI 89 (512)
Q Consensus 15 ~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~ 89 (512)
...++.|+++-+..+++.-..++. ..++ .+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~t-pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGINPNFEIYDGIS-PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 334567889888888877554433 2233 334445667654 444455566655432 122345555677888
Q ss_pred HHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDV---FVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHG 165 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~ 165 (512)
+.+..+++ .|...+. ....+.+...+..|+.+-+..+++.-...+ ++..-. +.+...+..|+.+....
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~-tpLh~A~~~~~~~~v~~--- 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF-SPLHLAVMMGDIKGIEL--- 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHH---
Confidence 76655543 3321111 011234444556777766665555422211 111112 23444455666655444
Q ss_pred HHHHcCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHhcCCCCch---HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-C
Q 043142 166 FSWRHRFELNVK--VKTALVDMYAKCGLVKVARNLFEQLREKRVV---SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-P 239 (512)
Q Consensus 166 ~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p 239 (512)
+.+.|..++.. ...+.+...+..|+.+-+.-+++.-...+.. ...+.+..-+..|+.+-+ +-+.+.|. +
T Consensus 154 -Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad~ 228 (413)
T PHA02875 154 -LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGADC 228 (413)
T ss_pred -HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcCc
Confidence 44455433321 1223344456678888777777654443321 112334433455665433 33344455 5
Q ss_pred CH
Q 043142 240 DH 241 (512)
Q Consensus 240 ~~ 241 (512)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 43
No 430
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.47 E-value=1e+02 Score=30.42 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHHhCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 299 LIMQMRVKPDPG--VWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 299 ~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
+|...+++|... +..+-+..+.+++++..|-.+.+++++++|+.
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344445555433 66777777889999999999999999998854
No 431
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.90 E-value=54 Score=29.14 Aligned_cols=56 Identities=30% Similarity=0.480 Sum_probs=31.0
Q ss_pred HhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 287 LGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
..+.|+.+.|.+++.+. ...|+ ...|-.+...--+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555554 22332 3356555555566666666666666666665554
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.87 E-value=2e+02 Score=23.29 Aligned_cols=72 Identities=15% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCCcchHHHHHHHHhccC---ChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 70 VPDNFTFPFALKACSALS---AIEEGRRIHEDVIRNKWETD-VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 70 ~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
.++..+-..+..++.+.. +..++..+++.+.+...+.. ....--|.-++.+.++++.++++.+.+.+..||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 345555555566666554 46678889999887432222 2222335567889999999999999998887753
No 433
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.82 E-value=1.7e+02 Score=27.55 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=75.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
++..--+..++.+-++.-....+ +.|.-.+-- ++-+--...-+.+|+.++++.++.| + .+|+ +..+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALe--IN~eCA~Ay-vLLAEEEa~Ti~~AE~l~k~ALka~-e---~~yr-------~sqq 255 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALE--INNECATAY-VLLAEEEATTIVDAERLFKQALKAG-E---TIYR-------QSQQ 255 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHh--cCchhhhHH-HhhhhhhhhhHHHHHHHHHHHHHHH-H---HHHh-------hHHH
Confidence 44444455555555555444444 223322211 2222233445677888888887765 1 1222 1111
Q ss_pred hHHHHHHHHhhhhCCCChhHHH--HHHHHHhccCChHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHH-
Q 043142 124 VVNARQVFDKILERDPSEATLV--TVISASADIAALPQGRELHGFSWRHR-FELNVKVKTALVDMYAKCGLVKVARNLF- 199 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~- 199 (512)
...--...+.+..+|.+..+|. .+.....+.|++.+|.+.++.+.+.- +..-..+...|+.++....-+.+...++
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122234455666665554 23333356788888888877765542 1111233445677776666555555554
Q ss_pred --HhcCCCC--chHHHH
Q 043142 200 --EQLREKR--VVSWNA 212 (512)
Q Consensus 200 --~~m~~~~--~~~~~~ 212 (512)
+++..|. ..+|++
T Consensus 336 kYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 336 KYDDISLPKSAAICYTA 352 (556)
T ss_pred hhccccCcchHHHHHHH
Confidence 4444443 355654
No 434
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.70 E-value=5.8e+02 Score=28.48 Aligned_cols=260 Identities=13% Similarity=0.030 Sum_probs=150.0
Q ss_pred HHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 043142 28 QLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD 107 (512)
Q Consensus 28 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 107 (512)
.+.+.+..+|...--.-+..+.+.+. .++...+..+... +|...-...+.++.+.+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 45555567777777777777777775 4466666666542 3433334444555444321112233333333 357
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
..+-...+..+...+.-+ ...+...+ .++|...-...+.++...+..+. + ..+ --.++..+-...+.++.
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L--~D~d~~VR~~Av~aL~~~~~~~~---l-~~~---l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAAL--GDPDHRVRIEAVRALVSVDDVES---V-AGA---ATDENREVRIAVAKGLA 767 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHh--cCCCHHHHHHHHHHHhcccCcHH---H-HHH---hcCCCHHHHHHHHHHHH
Confidence 677777777776554221 22233333 34566666666777776655432 1 112 23556777777777777
Q ss_pred hcCCHHH-HHH-HHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 188 KCGLVKV-ARN-LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 188 ~~g~~~~-A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
..+..+. +.. +..-+..+|...-.+.+.++...|..+.+...+..+... +|...-...+.++...+.- ++...+.
T Consensus 768 ~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d--~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRA--SAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred HhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC--CChHHHHHHHHHHHhcccc-chHHHHH
Confidence 7775443 233 334445677777777888888888776554555444432 5666666677888887764 4555555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhH
Q 043142 266 SMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGV 311 (512)
Q Consensus 266 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 311 (512)
.+.+ .|+..+-...+.++++.+.-..+...+...-..+|..+
T Consensus 845 ~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 845 EALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred HHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 5543 57777777788888886434456666655532445443
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.49 E-value=46 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
|-.-.-..|.+|.+.|++++|.+.++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567788888888888888777653
No 436
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.32 E-value=62 Score=30.01 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=31.3
Q ss_pred HhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 287 LGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
..+.|+.++|..+|+.. .+.|+.. ...-+..-.-.++++-+|.+++-+++...|.+..+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 34566667776666654 3333322 22223333334455666666666666666665543
No 437
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.11 E-value=1.7e+02 Score=22.15 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHH
Q 043142 92 GRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTV 147 (512)
Q Consensus 92 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~l 147 (512)
-++.++++...+....+-....|.-.|++.|+-+.|.+-|+.=...-|.+.+|-..
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 34445555554433333444556677889999999999888877766766665443
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.78 E-value=2.9e+02 Score=27.20 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C---------CchHHHHHHHHHHHcCChHHHHHHHHHh
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE--K---------RVVSWNAMITGYAMHGHSTKALDLFEKM 233 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m 233 (512)
....|+..++-.||+..|.++++.+.- + .+.++--+.-+|...+++.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777778888888888776641 1 1345555666777777888888777765
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.34 E-value=3.1e+02 Score=29.80 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=91.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
+|.-+.+.|.++-|+...+. ..|- ...+...|+++.|.+.-..+ .|..+|..|.....+.|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcc
Confidence 44445556666666555432 2211 12344567888777654432 367788888888888888
Q ss_pred hHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 124 VVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
.+-|+..|++...-+ -|--.|.-.|+.++-.++...+..+. |. +......+| .|++++=.++++...
T Consensus 688 ~~IaEm~yQ~~knfe-------kLsfLYliTgn~eKL~Km~~iae~r~---D~-~~~~qnalY--l~dv~ervkIl~n~g 754 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKNFE-------KLSFLYLITGNLEKLSKMMKIAEIRN---DA-TGQFQNALY--LGDVKERVKILENGG 754 (1202)
T ss_pred hHHHHHHHHHhhhhh-------heeEEEEEeCCHHHHHHHHHHHHhhh---hh-HHHHHHHHH--hccHHHHHHHHHhcC
Confidence 888888888775432 22223344577776666555443322 11 111112222 578888888877665
Q ss_pred CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 204 EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 204 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
..+.. |-+ -..+|.-++|.++.++...+.
T Consensus 755 ~~~la-ylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 755 QLPLA-YLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred cccHH-HHH----HhhcCcHHHHHHHHHhhcccc
Confidence 43322 211 234677788988888886643
No 440
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.94 E-value=2.6e+02 Score=23.87 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=13.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 043142 247 VLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
-+.-|.+.|+++.+...|.++.
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHH
Confidence 3445556666666666666554
No 441
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.83 E-value=1.2e+02 Score=21.76 Aligned_cols=51 Identities=24% Similarity=0.119 Sum_probs=22.4
Q ss_pred HHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 043142 17 YSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN 73 (512)
Q Consensus 17 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 73 (512)
.++.|+++-...+++.-...+. -.+ .+...+..|+. ++++.+.+.|..|+.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~-~~~-~l~~A~~~~~~----~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL-GNT-ALHYAAENGNL----EIVKLLLENGADINS 54 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS-SSB-HHHHHHHTTTH----HHHHHHHHTTTCTT-
T ss_pred HHHcCCHHHHHHHHHCcCCCCC-CCC-HHHHHHHcCCH----HHHHHHHHhcccccc
Confidence 3455666666666653333232 111 23333444542 344444445555543
No 442
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.60 E-value=5.3e+02 Score=27.42 Aligned_cols=357 Identities=7% Similarity=-0.114 Sum_probs=161.8
Q ss_pred HHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHH
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEG 92 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 92 (512)
-+..+++.++++...+ |..-++.+...--....+....|+.++|......+-..|.. ....+..++..+.+.|.+...
T Consensus 105 ~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 105 FVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHH
Confidence 3444556677777776 33222334444444566677778777777776666554422 344566777666655543321
Q ss_pred H--HHHHHHHHhCCCCChhHHHHHHHHHHh------------CCChHHHHHHHHhhhhCCCChhHHHHHHHHHh--ccCC
Q 043142 93 R--RIHEDVIRNKWETDVFVGAALIDMYAK------------CSCVVNARQVFDKILERDPSEATLVTVISASA--DIAA 156 (512)
Q Consensus 93 ~--~~~~~~~~~g~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~--~~~~ 156 (512)
. +=+..+...| +...-..|...... ..+...+..++... +|+...-..++-++. ...+
T Consensus 183 d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~---~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 183 AYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTT---GPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhcc---CCChhhHHHHHHHHHHHHHhC
Confidence 1 1111111111 11111111111100 00111111111110 112111111111221 2334
Q ss_pred hHHHHHHHHHHHHc-CCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCChHHHHHHHH
Q 043142 157 LPQGRELHGFSWRH-RFELNV--KVKTALVDMYAKCGLVKVARNLFEQLREK--RVVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 157 ~~~a~~~~~~~~~~-g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
.+.|..++...... ++.+.. .+...+....+..+...+|...++..... +...+.--+..-...++++.+...+.
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 56666666655332 222221 22233332223332255566666654322 22222223333346777777777777
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CCCCC------hh--------HHHHHHHH
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDY-----------HIDPS------VQ--------HYTCMVDL 286 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----------~~~p~------~~--------~~~~li~~ 286 (512)
.|.....-...-.-=+..+....|+.++|..+|+.+.... |..+. .. .-..-+..
T Consensus 337 ~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~ 416 (644)
T PRK11619 337 RLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRE 416 (644)
T ss_pred hcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHH
Confidence 7644322222333345566566777777777777653221 11100 00 00112334
Q ss_pred HhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CCCchHHHHHHHHHhccChhHHH
Q 043142 287 LGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE-P--HDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
+...|...+|...+..+-...+......+.......|..+.+.....+....+ . .-|..|...+..+++.-.++.+.
T Consensus 417 L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 417 LMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 55567777777666655223444455555555667777777777665443321 0 12334666666666665666555
Q ss_pred HHHHHHHhCCCccC
Q 043142 364 KLRKLMIDRGIKKS 377 (512)
Q Consensus 364 ~~~~~m~~~g~~~~ 377 (512)
-.--...|.+..|.
T Consensus 497 v~ai~rqES~f~p~ 510 (644)
T PRK11619 497 AMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHhcCCCCC
Confidence 33333335555544
No 443
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.59 E-value=1.7e+02 Score=21.65 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=40.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhccChh-HHHHHHHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH--DAGNYVILSNIYARAANWE-GVAKLRKLM 369 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 369 (512)
|...--.+...+...|+++.|++.+-++++.++. +...-..|+..+.-.|.-+ .+.+...+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3456667777888888888888888888887754 4566677777777777643 444444444
No 444
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.17 E-value=2.8e+02 Score=24.07 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQ 201 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~ 201 (512)
-.+.|.....+.++|.++.|..++++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34556666667777777777777664
No 445
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.64 E-value=3.7e+02 Score=26.84 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCccCCc--eeeEEECCEEEEEEeCCCCCCChHHH--HHHHHHHHHHHHHcCcccCCCcc
Q 043142 361 GVAKLRKLMIDRGIKKSIA--CSWIEVKNKAHAFLSGDASHPNCDEI--YAKLKWLEGRMKEAGYVPGTESV 428 (512)
Q Consensus 361 ~a~~~~~~m~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~m~~~g~~pd~~~~ 428 (512)
++..+++.+...|+....| +||. +.-....|-.+.+ ++...+|.....+.|+..+...+
T Consensus 152 DarlL~e~~~a~G~~a~EGG~ISYn---------lPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~F 214 (480)
T TIGR01503 152 DARLLAEIILAGGFTSFEGGGISYN---------IPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPF 214 (480)
T ss_pred cHHHHHHHHHHcCCCccCCCcceec---------cccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccc
Confidence 5677888888888864442 3332 1222234443333 34456777777888888777544
No 446
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.59 E-value=8.3e+02 Score=31.62 Aligned_cols=339 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
+...-.|.+.|.+++|..++++.... +...|..-=..+-...-..-|.++-+++.-....-....+..++.+..+..
T Consensus 2486 T~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~~~llle~aWrls 2565 (3550)
T KOG0889|consen 2486 TMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGNYELLLECAWRLS 2565 (3550)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeehhccCC
Q ss_pred ChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCC-hHHHHHHHHhhhhCC-------CChhHHH--HHHHHHhcc
Q 043142 88 AIEEGRRIHEDVIRNKWET---DVFVGAALIDMYAKCSC-VVNARQVFDKILERD-------PSEATLV--TVISASADI 154 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~-------pd~~t~~--~ll~~~~~~ 154 (512)
++..-...+....+.-.++ ....|.+.+..+.+..+ ..+..+..++..+.. |+.++.. .+++++.+.
T Consensus 2566 dw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~Qqi 2645 (3550)
T KOG0889|consen 2566 DWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQI 2645 (3550)
T ss_pred cchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHH
Q ss_pred CChHHHHHHHHHHHHc---CCCCchHHHHHHHHHH-HhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHH-----cCChHH
Q 043142 155 AALPQGRELHGFSWRH---RFELNVKVKTALVDMY-AKCGLVKVARNLFEQLREKRVVSWNAMITGYAM-----HGHSTK 225 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y-~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-----~g~~~~ 225 (512)
-...+|.+++..+... |......-..+++... -|.-...+-...+..+..--...|..+..+|.. ......
T Consensus 2646 vEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns 2725 (3550)
T KOG0889|consen 2646 VELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNS 2725 (3550)
T ss_pred HHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCc
Q ss_pred --HHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCChHHHHHHH
Q 043142 226 --ALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDLLGHSGRLDEACDLI 300 (512)
Q Consensus 226 --A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 300 (512)
+..-+++| +.+.+.......+.|..+-+...+.++-....++-+ ...-..+-..+...+....++++.
T Consensus 2726 ~~~~~Gyhe~-------A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi 2798 (3550)
T KOG0889|consen 2726 NNLYRGYHEL-------AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVI 2798 (3550)
T ss_pred chHHHhHHHH-------HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q ss_pred HhC-----CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 301 MQM-----RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 301 ~~m-----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
+.. +.+-....++.=..-..+.|+.++|-+.|..+.++.-.-+..|.....-..+.
T Consensus 2799 ~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~ 2859 (3550)
T KOG0889|consen 2799 ESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR 2859 (3550)
T ss_pred hcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 447
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.56 E-value=89 Score=30.99 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCcchH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 043142 48 YAWNGPYEVAIELYYRLLEIGLVPDNFTF-PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN 126 (512)
Q Consensus 48 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 126 (512)
+.+.+.++.|..++.+.++ +.||...| ..-..++.+.+++..|..=...+++.. +.-...|--=..++.+.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHH
Confidence 4455666777777777666 34554433 222355666666666666555555543 1111122222233334455566
Q ss_pred HHHHHHhhhhCCCChhHHHHHHHHH
Q 043142 127 ARQVFDKILERDPSEATLVTVISAS 151 (512)
Q Consensus 127 A~~~~~~m~~~~pd~~t~~~ll~~~ 151 (512)
|+..|+......|+..-+.-.+.-|
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6666666666666655555555444
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.86 E-value=1.3e+02 Score=29.62 Aligned_cols=56 Identities=5% Similarity=0.008 Sum_probs=30.0
Q ss_pred HHHHHHHhccCChHHHHHHHHhCCCCC----------CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQMRVKP----------DPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~p----------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
-.|++.++-.|++..|+++++.+.+.. .+.++--+.-+|...+++.+|.+.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777766652111 12233444445555566666666666554
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.78 E-value=3e+02 Score=24.02 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHI 242 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~ 242 (512)
...+.++..+...|+++.|-+.|.-+......|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH
Confidence 45667777788888888888888887765444543
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.44 E-value=1.8e+02 Score=24.50 Aligned_cols=34 Identities=3% Similarity=-0.121 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCS 122 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 122 (512)
.-.|.++++.+.+.+...+..|--.-++.+.+.|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344455555544443333333222334444444
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.37 E-value=2.2e+02 Score=24.45 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=15.4
Q ss_pred HHHhccCChHHHHHHHHhCCCCCCHhHHHH
Q 043142 285 DLLGHSGRLDEACDLIMQMRVKPDPGVWGA 314 (512)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 314 (512)
-.|.+.|.+++|.+++++.--.|+......
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 345566666666666665522444443333
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.30 E-value=2.9e+02 Score=25.04 Aligned_cols=52 Identities=23% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHcCChHHHHHHHHHhHH----CCC--CCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 213 MITGYAMHGHSTKALDLFEKMKD----EVQ--PDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~----~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
|..-|...|++++|+++|+.+.. .|- +...+...+..+..+.|+.+....+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566777777777777776632 222 34444555555666666666555443
No 453
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.16 E-value=2.2e+02 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCC
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGG 255 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g 255 (512)
.++..+.+.+..-.|.++++++.+.++ .+..|.-..+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444445444555566666655555 44444444444444444
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.76 E-value=1.2e+02 Score=20.57 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=11.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhh
Q 043142 113 ALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m 134 (512)
.+|.+|...|++++|.+..+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555666666666555554
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.65 E-value=3.1e+02 Score=23.81 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCchHHHHHHH-HHHHcCC--hHHHHH
Q 043142 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE------KRVVSWNAMIT-GYAMHGH--STKALD 228 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~ 228 (512)
+++.++-+.+.+ ++..+-.....|++++|.+-++.+.+ +-...|..+.. +++.++. +-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 445555555443 23333444667888888888877653 22455666665 6666654 456777
Q ss_pred HHHHhHHCCCCC
Q 043142 229 LFEKMKDEVQPD 240 (512)
Q Consensus 229 ~~~~m~~~~~p~ 240 (512)
++.-....+.|.
T Consensus 91 l~~~l~~~~~ps 102 (204)
T COG2178 91 LYSILKDGRLPS 102 (204)
T ss_pred HHHHHhcCCCCC
Confidence 776666554443
No 456
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.48 E-value=1.9e+02 Score=21.38 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCh
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHS 223 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 223 (512)
..++..+.+.|+-.+.. .-...+..-+.+++.++++.++.++..+|..+..++-..+..
T Consensus 23 ~~v~~~L~~~gvlt~~~----~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 23 DELLIHLLQKDILTDSM----AESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHcCCCCHHH----HHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 34566666666433221 122223446778889999999999999999998888765543
No 457
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=34.34 E-value=5.3e+02 Score=26.47 Aligned_cols=182 Identities=15% Similarity=0.064 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CChhHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWE--TDVFVGAALID 116 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~ 116 (512)
..+.-.+.+++..|...+++.+.++.... | ..|..+...+...+...+|...+-+-++.+-+ .+......+.+
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~~---~--~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~e 378 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAEG---P--GSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAE 378 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhcC---c--ccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHH
Confidence 35666778888999999999888876542 2 45888888888889888888776665554422 23445667889
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHH--hccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEATLVTVISAS--ADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKV 194 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 194 (512)
.+...|++-.|..+=...-.++|+...|.-+=.+- ...|+.+....+ .-.+.|..| +.....+.-..|-...
T Consensus 379 l~~~~g~~~~a~~Laq~~F~r~p~~~sy~~lw~~~~~~gi~~~e~~~a~--~~~~~~~~p----~~~~~~~l~~~g~~~p 452 (587)
T COG4715 379 LKEEEGRLGFAAELAQEAFFRTPNGRSYLGLWLAAVYAGIGREEREAAL--AYLEVGESP----FAIWPGALPLTGLLWP 452 (587)
T ss_pred HHHhhcchHHHHHHHHHHccCCCCccchhhHHHHHHHhhhchHHHHHHH--HHHHhccCc----hhhhhhhhhhcccCCc
Confidence 99999999999999888888888877776544333 333433322222 222334344 1111122212221111
Q ss_pred H--HHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 195 A--RNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 195 A--~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
+ ..+. ...-..++.++.+...+.++.+-+.+....+.
T Consensus 453 ~d~~~li-------~~~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~ 491 (587)
T COG4715 453 ADRRTLI-------TRLLSLLIEGAIQEKADLELAEWLAELAKEGV 491 (587)
T ss_pred chhhhHh-------hhhHHHHHHHHHHhhchHHHHHHHHHHHhhhH
Confidence 1 1110 12234456677777777777777777666555
No 458
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.18 E-value=78 Score=29.43 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVG 246 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ 246 (512)
-||..|..-.+.|+.++|+.+++|.+..|. --..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466777777778888888888888777777 44444443
No 459
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.11 E-value=2.4e+02 Score=22.46 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPG-VWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
..+..++..++.-.|..++|.+++...+-.++-. .-.-++..|....+.++..++-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444555555556666666666666654333332 22335555555555544444433
No 460
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.94 E-value=1.1e+02 Score=21.03 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=27.9
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc
Q 043142 205 KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR 253 (512)
Q Consensus 205 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~ 253 (512)
+..+.++.++..++...-.++++..+.+..+.|..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666555555555554443
No 461
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.84 E-value=1e+02 Score=18.16 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 043142 314 ALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~ 331 (512)
.+.-.+-..|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555666666666
No 462
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.63 E-value=29 Score=32.62 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=49.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHHHHHHHhccCChHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVTVISASADIAALPQGREL 163 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~ 163 (512)
..|.++.|.+.+...++.. ++....|..-...+.+.++...|++=++...+.+||... |-.=-.+-...|+++++...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666666554 444555555556666666666676666666666665431 22222233345666666666
Q ss_pred HHHHHHcCCCC
Q 043142 164 HGFSWRHRFEL 174 (512)
Q Consensus 164 ~~~~~~~g~~~ 174 (512)
+....+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66666555443
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.24 E-value=4.3e+02 Score=25.08 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhc---cCChHHHHH
Q 043142 223 STKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGH---SGRLDEACD 298 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~---~g~~~~A~~ 298 (512)
.+.-+.++++..+.++.+.......+..+.+..+.+...+-++.+... .| +...|...++.... .-.+++..+
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 356677777777776667777777888888888888888888888755 34 56666666665443 223444444
Q ss_pred HHHhC-------CCC--------CC--Hh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 299 LIMQM-------RVK--------PD--PG---VWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 299 ~~~~m-------~~~--------p~--~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+|.+. ... ++ .. .+.-+..-+...|..+.|..+++-+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44332 100 11 11 22222333467899999999999999976
No 464
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.18 E-value=1.7e+02 Score=30.40 Aligned_cols=84 Identities=7% Similarity=-0.048 Sum_probs=60.9
Q ss_pred hccCChHHHHHHHHh-CCCCC-C------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 288 GHSGRLDEACDLIMQ-MRVKP-D------PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~-m~~~p-~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
.+..++..+.++|.. |..-| | ......|--+|....+.+.|.++++++.+.+|.++-.-..+..+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 345567777776653 32111 1 124566666778888899999999999999988887777788888888999
Q ss_pred hHHHHHHHHHHh
Q 043142 360 EGVAKLRKLMID 371 (512)
Q Consensus 360 ~~a~~~~~~m~~ 371 (512)
++|+........
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 999888877654
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.17 E-value=1.9e+02 Score=24.36 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 294 (512)
.++..+......-.|.++++.+.+. +...+..|..--++.+.+.|-+.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3444444444555666677766433 44444444444556666666654
No 466
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.09 E-value=4e+02 Score=24.62 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc---------------ChhHHHHHHHHHHhCCC
Q 043142 323 GHVKLAELALEKLIELEPHDAGNYVILSNIYARAA---------------NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~ 374 (512)
.+.++|...|.++-+.+. ......+. .+...| +...|...+......+.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 366777777777777665 23333333 333333 55555555555555443
No 467
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.43 E-value=1.3e+02 Score=19.02 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=25.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
..+.|-+.++..+++.|.+.|+-.+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777788888888888888777777776654
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.42 E-value=2.5e+02 Score=22.20 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=12.1
Q ss_pred HHHHHhccChhHHHHHHHH
Q 043142 350 SNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~ 368 (512)
..++...|+.++|.+.|+.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 3455667788888777764
No 469
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.38 E-value=3.7e+02 Score=24.02 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=17.8
Q ss_pred CChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 291 GRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 291 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
+++++|.+.+-.-...|+-.. -++.++...|+.+.|..+++.
T Consensus 92 ~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 92 GDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHh
Confidence 445555555433322222111 244444445555555554443
No 470
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.25 E-value=6.2e+02 Score=26.65 Aligned_cols=157 Identities=12% Similarity=0.158 Sum_probs=73.6
Q ss_pred HHHHHHHHHH-ccCChHHHHHHHccCC----CCCch-----HHHHHHHHHHhcCCchHHHHHHHHHHHCC----CCCCcc
Q 043142 9 LATKLVHLYS-ACDCLHNAHQLFDRIP----QRNLF-----LWNVLIRAYAWNGPYEVAIELYYRLLEIG----LVPDNF 74 (512)
Q Consensus 9 ~~~~Li~~y~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~ 74 (512)
+.-.|...|. ...+++.|+..+++.. +++.. .-..++..+.+.+... |....++.++.- ..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444555544 4567777777776642 12111 1223455555555444 777777655431 111122
Q ss_pred hHHHH-HHHHhccCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHH--HhCCChHHHHHHHHhhhhC------C----
Q 043142 75 TFPFA-LKACSALSAIEEGRRIHEDVIRNK---WETDVFVGAALIDMY--AKCSCVVNARQVFDKILER------D---- 138 (512)
Q Consensus 75 t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~------~---- 138 (512)
.|..+ +..+...++...|.+.++.+.... ..|-..++-.++.+. .+.+..+++.+..+++... +
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 23222 222222367777777776665432 133344444444333 2345455565555554211 1
Q ss_pred -CChhHHHHHHHHHh--ccCChHHHHHHHHH
Q 043142 139 -PSEATLVTVISASA--DIAALPQGRELHGF 166 (512)
Q Consensus 139 -pd~~t~~~ll~~~~--~~~~~~~a~~~~~~ 166 (512)
|-..+|..++..++ ..|+++.+.+....
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22345555555543 44555555544433
No 471
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.12 E-value=5.2e+02 Score=25.65 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=7.0
Q ss_pred HHcCcccCCCccc
Q 043142 417 KEAGYVPGTESVF 429 (512)
Q Consensus 417 ~~~g~~pd~~~~~ 429 (512)
...++.+.+.++.
T Consensus 348 ~~~~f~~~~Ry~~ 360 (410)
T TIGR02270 348 NAPRFKPGVRYLR 360 (410)
T ss_pred hcccCCCcccccC
Confidence 3445666665543
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.85 E-value=2.3e+02 Score=23.20 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=32.5
Q ss_pred HHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 62 YRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 62 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
+.+.+.|++++. --..++..+...++.-.|.++|..+.+.+...+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344455555443 2334455555555556667777776666544444433334555555554
No 473
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.44 E-value=4.4e+02 Score=24.69 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043142 257 FDEGRMFFESMVRDYHI---DPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALE 333 (512)
Q Consensus 257 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 333 (512)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888888653111 335566677777778888877666666666545677788889999999999999999999
Q ss_pred HHHhcC
Q 043142 334 KLIELE 339 (512)
Q Consensus 334 ~~~~~~ 339 (512)
.++..+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 998853
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.36 E-value=1.9e+02 Score=26.96 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=13.6
Q ss_pred CChhHHHHHHHHHhccCChHHH
Q 043142 139 PSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 139 pd~~t~~~ll~~~~~~~~~~~a 160 (512)
-|+..|..++.||.-.|+...+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 4566666677776666655443
No 475
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.25 E-value=6.9e+02 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 315 LLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 315 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
.+.+-.-.+++.+|.+..+.|.++.|+..
T Consensus 372 y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 372 YFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 34555667899999999999999998753
No 476
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.07 E-value=2.9e+02 Score=29.42 Aligned_cols=26 Identities=19% Similarity=-0.063 Sum_probs=13.1
Q ss_pred CCcchhHHHHHhhhcCceEEEeeCCc
Q 043142 472 CDDCHIAIKFISKITEREITVRDVNR 497 (512)
Q Consensus 472 ~~~~~~a~~~~s~~~~~~~~~~d~~~ 497 (512)
|..-|++.--.|.+.+-.+.-||.|+
T Consensus 491 ~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 491 LKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hcCceeeeeehhceecccccccccce
Confidence 44445555555555555555555443
No 477
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.85 E-value=5.2e+02 Score=25.34 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=103.8
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCC
Q 043142 48 YAWNGPYEVAIELYYRLLEIGLVPDNFT--FPFALKACSALSAIEEGRRIHEDVIRNKWETDVF--VGAALIDMYAKCSC 123 (512)
Q Consensus 48 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 123 (512)
.++.|+.+- ++.+.+.|..|+... -.+.+..++..|+.+- .+.+++.|..|+.. .....+...++.|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 345666544 344445677666432 3344555566777764 44455666554432 12234555677899
Q ss_pred hHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHH--HHHHHHHHHhcCCHHHHHHHH
Q 043142 124 VVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKV--KTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~ 199 (512)
.+.+..+++.-.... .+..- .+.+...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 888777776432211 01111 1233334445655 45555566676554321 223445556788888877777
Q ss_pred HhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 043142 200 EQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHIT---FVGVLSACSRGGLFDEGRMFFESMVRDYH 272 (512)
Q Consensus 200 ~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 272 (512)
+.-... |...++.+.. .+..|+.+ +.+.+.+.|. |+... ...++......|..+-+.-+++ .|
T Consensus 156 ~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-----~g 225 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK-----RG 225 (413)
T ss_pred hcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH-----CC
Confidence 654332 2233333333 33456544 3334445555 54322 1234443445566654444332 35
Q ss_pred CCCCh
Q 043142 273 IDPSV 277 (512)
Q Consensus 273 ~~p~~ 277 (512)
..++.
T Consensus 226 ad~n~ 230 (413)
T PHA02875 226 ADCNI 230 (413)
T ss_pred cCcch
Confidence 55543
No 478
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.31 E-value=5.3e+02 Score=25.23 Aligned_cols=54 Identities=13% Similarity=-0.025 Sum_probs=33.9
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchH--HHHHHHHHHH--hcCCHHHHHHHHHhcCCC
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVK--VKTALVDMYA--KCGLVKVARNLFEQLREK 205 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~--~~g~~~~A~~~~~~m~~~ 205 (512)
..+.+++..|.+++..+.+. ++++.. .+..+..+|. ..-++++|.+.|+.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567777777777777766 444443 4444555553 356777888888776544
No 479
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.98 E-value=1.7e+02 Score=20.64 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
+.+.|.+++..+.... +.++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 3455556655554332 4566777776665544
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.96 E-value=5.7e+02 Score=25.49 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 313 GALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 313 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
..|+.-|...|++.+|.+..+++---.-+....+..++.+..+.|+-+..+.+++..-+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 45666677777777777665543211111233555666666666665555666665555554
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.70 E-value=1.1e+02 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
....++.+.|.+++.+++++-|.....|.-+...-.++|+++.|.+-+++..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 35678899999999999999999999999999999999999999999999887654
No 482
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.13 E-value=93 Score=22.70 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=40.5
Q ss_pred HHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHH
Q 043142 27 HQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEG 92 (512)
Q Consensus 27 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 92 (512)
..+++.+.+.++.+....-..-+...+.++|.++++.+..+| ..+|.....++-..|....|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 345666666667666665555566667778888888777765 23577777777666655444
No 483
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=29.13 E-value=3e+02 Score=21.97 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH---HHHHHHHhcc-------CChHHHHHHHHHHHHhCCCCChhH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF---PFALKACSAL-------SAIEEGRRIHEDVIRNKWETDVFV 110 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~-------~~~~~a~~~~~~~~~~g~~~~~~~ 110 (512)
....++.+.+..-.-.++++..++....-.|..+.- +.-+..|-.. +.....-.+.+.+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 555566666666666777777777665545544321 1123333321 222333445666677776555556
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 111 GAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
+..+=..+.+..++.+|..+|+-+.
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHHh
Confidence 6666666677777778877776653
No 484
>PF15161 Neuropep_like: Neuropeptide-like
Probab=28.65 E-value=33 Score=22.32 Aligned_cols=16 Identities=31% Similarity=0.756 Sum_probs=11.9
Q ss_pred ccccCCcchhHHHHHhh
Q 043142 468 NLKICDDCHIAIKFISK 484 (512)
Q Consensus 468 ~~~~~~~~~~a~~~~s~ 484 (512)
.-|-|.|||.+. |+.+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 457899999876 5554
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.49 E-value=3e+02 Score=21.88 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHH
Q 043142 328 AELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 328 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (512)
..++|..|.+.+ ..-+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777776644 4456677778888888888888888875
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.78 E-value=4.6e+02 Score=23.69 Aligned_cols=74 Identities=9% Similarity=0.055 Sum_probs=44.5
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--------------CChhHHHHHHHHHhccCChHHHHHHHHH
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--------------PSEATLVTVISASADIAALPQGRELHGF 166 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 166 (512)
..+++-+..-..+++ +...|++..|+.-++...... |.+.....++..|. .+++++|.+++..
T Consensus 187 ~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~ 263 (333)
T KOG0991|consen 187 AEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAE 263 (333)
T ss_pred HhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 334443433333333 445788888877776654321 55555666666654 3567788888888
Q ss_pred HHHcCCCCchH
Q 043142 167 SWRHRFELNVK 177 (512)
Q Consensus 167 ~~~~g~~~~~~ 177 (512)
+.+.|+.|...
T Consensus 264 lw~lgysp~Di 274 (333)
T KOG0991|consen 264 LWKLGYSPEDI 274 (333)
T ss_pred HHHcCCCHHHH
Confidence 88887776543
No 487
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.67 E-value=4.8e+02 Score=23.88 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH-HHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYV-ILSNIYA 354 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~ 354 (512)
++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-....|. |.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHHH
Confidence 67778888888999999999888775542 2222222223332222332 33333333 2344567
Q ss_pred hccChhHHHHHHHHHHhC
Q 043142 355 RAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 355 ~~g~~~~a~~~~~~m~~~ 372 (512)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788999999988887755
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.49 E-value=4.2e+02 Score=23.14 Aligned_cols=60 Identities=25% Similarity=0.240 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAG-NYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+.++..|...||++.|.++|.-++...+.|.. .|..=+..+.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 4567778888888888888888888876654433 34444555666665555556666664
No 489
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=1.9e+02 Score=26.52 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 313 GALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 313 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+-.++...++++.|....++.+.++|.++.-..--.-+|.+.|...-|..-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344456778888999999999999999988776777778888888888888877775443
No 490
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.91 E-value=5.5e+02 Score=24.34 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISA 150 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~ 150 (512)
+.-..+++++++.. +.+....-.++..+.+..+.+...+.++++...+|+.. .|...|..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34455666666663 45566666677777777777777777777777666433 34444443
No 491
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=26.82 E-value=3.7e+02 Score=27.29 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CCchHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH--------DAGNYV 347 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~ 347 (512)
++..|-..+.-|...+++++|.++-+-.+ +...|.+|......+.+..-++..|..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 44556667777888889999998887664 5667888888777888877777777666554321 111122
Q ss_pred HHHHHHHhccChhHHHHHHH
Q 043142 348 ILSNIYARAANWEGVAKLRK 367 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~ 367 (512)
.+.....-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 33344444566666665553
No 492
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.60 E-value=8.8e+02 Score=27.21 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=22.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
..+.|+.+=+-+++++.++.|.. .-| .|+ .+.|++++|++-+.+
T Consensus 883 ~SQkDPKEYLPfL~~L~~l~~~~-rry--~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 883 QSQKDPKEYLPFLQELQKLPPLY-RRY--KID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HhccChHHHHHHHHHHHhCChhh-eee--eHh--hhhCCHHHHHHHHHh
Confidence 34445555555555555554322 111 111 345778887776654
No 493
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.57 E-value=2.2e+02 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=13.7
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 043142 44 LIRAYAWNGPYEVAIELYYR 63 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~ 63 (512)
++++|...|++.+|+.-|+.
T Consensus 16 i~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 45677777777777776654
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.53 E-value=1.2e+02 Score=20.89 Aligned_cols=48 Identities=25% Similarity=0.093 Sum_probs=27.4
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 35 QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
.+..+.++.++..+++..-.++++..+.++...|.- +..+|.--++.+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~L 52 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSL 52 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 345566677777777666677777777777666542 333444333333
No 495
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.21 E-value=84 Score=22.60 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCcc
Q 043142 402 CDEIYAKLKWLEGRMKEAGYVPGTESV 428 (512)
Q Consensus 402 ~~~~~~~l~~l~~~m~~~g~~pd~~~~ 428 (512)
..++...+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345566677888999999999998654
No 496
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.19 E-value=5.9e+02 Score=24.41 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHcc---CChHHHHHHHccCCCCCchHHH-----HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 8 VLATKLVHLYSAC---DCLHNAHQLFDRIPQRNLFLWN-----VLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 8 ~~~~~Li~~y~~~---g~~~~A~~~f~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
.++|++++.-.+. -.++.|...|..-. ....|- .+.+.+++.++-+.+..+-+.+.. -|..+ ..++
T Consensus 130 A~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~---lP~~v-l~aL 203 (340)
T PF12069_consen 130 AMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH---LPPEV-LYAL 203 (340)
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh---CChHH-HHHH
Confidence 3788888776554 34777887775432 134454 456778888887776666555543 23332 3344
Q ss_pred HHHHhccCChH-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHH-hccC
Q 043142 80 LKACSALSAIE-EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISAS-ADIA 155 (512)
Q Consensus 80 l~~~~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~-~~~~ 155 (512)
..++-...-.+ .+..+.+.+... +|.....+++++.+...........++.+.+.. .+...+..+..-| ....
T Consensus 204 ~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~ 280 (340)
T PF12069_consen 204 CGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLK 280 (340)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcC
Confidence 44443333222 244444444433 788888899998888777666666555555443 1233333333322 3344
Q ss_pred ChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043142 156 ALPQGRELHGFSWRHRFELNVKVKTALVDMY 186 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 186 (512)
+.+....+++.+-..+ |...++.+..=.
T Consensus 281 d~~~l~~fle~LA~~~---~~~lF~qlfaDL 308 (340)
T PF12069_consen 281 DPQLLRLFLERLAQQD---DQALFNQLFADL 308 (340)
T ss_pred CHHHHHHHHHHHHccc---HHHHHHHHHHHH
Confidence 5555555555554432 244455444433
No 497
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.10 E-value=6.4e+02 Score=24.82 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=41.3
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHH-------HHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGA-------LLNSC 319 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~-------ll~~~ 319 (512)
+-..|+...-..++....+...+.-| ....|+|++.|...+.++.|.++..+.. -|+..+-+- +....
T Consensus 179 ~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIk 257 (493)
T KOG2581|consen 179 YELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIK 257 (493)
T ss_pred HHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHH
Confidence 33445544444444444333223322 3344555666666666666666666553 122211111 11222
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 043142 320 KLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p 340 (512)
+.++++..|.+.|-.++...|
T Consensus 258 aiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 258 AIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HhhcchhHHHHHHHHHHHhCc
Confidence 345556666665555554444
No 498
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=5.1e+02 Score=23.58 Aligned_cols=85 Identities=9% Similarity=0.068 Sum_probs=45.7
Q ss_pred HHHHhcCCHHHHHHHHHhcC----------CCCchHH-------HHHH----HHHHHcCChHHHHHHHHHhHHCCCCCHH
Q 043142 184 DMYAKCGLVKVARNLFEQLR----------EKRVVSW-------NAMI----TGYAMHGHSTKALDLFEKMKDEVQPDHI 242 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~----------~~~~~~~-------~~li----~~~~~~g~~~~A~~~~~~m~~~~~p~~~ 242 (512)
+-+.+.|++.+|..-|.+.. +|...-| +.|+ ..+...|++-++++.-.+.....+.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 44567788888777665532 2332222 1222 2333345555666666666555555555
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.|-.=..|....-+.++|..=|..+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 55555555555556666666555554
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.73 E-value=1.6e+02 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCH
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLF 257 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~ 257 (512)
++..+...+.+-.|.++++++.+.++ .+..|....|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 44445555556677777777777766 6666666666666666654
No 500
>PRK09857 putative transposase; Provisional
Probab=25.19 E-value=5.2e+02 Score=24.18 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKK 376 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 376 (512)
+..++......++.++-.++++.+.+..|........++.-+...|.-+++.++.++|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34455554566777767777777766666555566677777777788788889999999888753
Done!