Query 043142
Match_columns 512
No_of_seqs 697 out of 3502
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-35 1.3E-39 304.3 36.7 365 3-374 146-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-34 4.9E-39 300.1 26.0 361 5-372 82-504 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5E-27 1.7E-31 229.9 39.3 354 13-372 5-368 (388)
4 4g26_A Pentatricopeptide repea 100.0 5E-29 1.7E-33 249.3 21.4 197 56-252 8-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3E-26 1E-30 224.4 39.3 347 6-358 32-388 (388)
6 4g26_A Pentatricopeptide repea 100.0 8.4E-28 2.9E-32 240.5 20.9 196 25-220 8-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6E-28 208.8 37.3 310 37-352 25-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4E-28 213.6 33.7 360 7-373 6-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.8E-22 6.2E-27 201.4 34.2 332 5-342 24-414 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.9E-26 199.5 34.2 361 7-374 25-493 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.3E-21 4.5E-26 198.4 31.0 345 4-349 36-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.4E-20 8.3E-25 179.6 34.1 312 38-355 3-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.9E-19 1E-23 172.0 33.4 297 73-373 3-336 (359)
14 3hym_B Cell division cycle pro 99.9 3.8E-19 1.3E-23 169.2 31.5 287 37-359 21-321 (330)
15 3fp2_A TPR repeat-containing p 99.9 7.2E-19 2.5E-23 179.4 32.1 340 5-346 57-499 (537)
16 3hym_B Cell division cycle pro 99.8 1.3E-18 4.5E-23 165.5 29.0 264 105-372 19-299 (330)
17 1b89_A Protein (clathrin heavy 99.8 2.8E-20 9.7E-25 177.8 16.6 310 9-354 8-339 (449)
18 1fch_A Peroxisomal targeting s 99.8 4.3E-19 1.5E-23 171.9 23.6 300 48-368 35-355 (368)
19 4g1t_A Interferon-induced prot 99.8 2.2E-17 7.5E-22 165.6 31.8 363 7-383 51-470 (472)
20 1fch_A Peroxisomal targeting s 99.8 7.9E-18 2.7E-22 162.9 25.8 296 17-336 35-357 (368)
21 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.3E-23 167.9 19.7 269 73-368 65-352 (365)
22 2xm6_A Protein corresponding t 99.8 1.9E-15 6.4E-20 152.4 41.0 351 6-374 38-434 (490)
23 4eqf_A PEX5-related protein; a 99.8 2E-17 7E-22 160.0 25.1 262 37-334 64-352 (365)
24 1b89_A Protein (clathrin heavy 99.8 2.6E-17 8.9E-22 157.4 23.4 332 5-369 30-369 (449)
25 3cv0_A Peroxisome targeting si 99.8 9.2E-17 3.1E-21 152.4 26.6 264 37-337 20-314 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 6.7E-17 2.3E-21 150.8 25.0 272 83-366 9-288 (291)
27 2ooe_A Cleavage stimulation fa 99.8 1.4E-15 4.7E-20 155.0 36.4 399 4-413 10-493 (530)
28 3cv0_A Peroxisome targeting si 99.8 3.9E-17 1.3E-21 155.0 22.2 273 74-369 22-312 (327)
29 2xm6_A Protein corresponding t 99.8 4.5E-15 1.5E-19 149.6 36.4 333 6-354 74-451 (490)
30 3mkr_A Coatomer subunit epsilo 99.7 5.3E-16 1.8E-20 144.7 24.3 247 116-374 7-266 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.7 7.1E-18 2.4E-22 173.7 6.8 149 7-155 127-286 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.7 2.8E-17 9.7E-22 169.3 9.1 127 172-299 123-258 (1134)
33 2ooe_A Cleavage stimulation fa 99.7 6.4E-14 2.2E-18 142.6 32.3 331 36-373 11-421 (530)
34 2pl2_A Hypothetical conserved 99.7 5.8E-15 2E-19 131.5 19.7 195 173-370 2-212 (217)
35 3u4t_A TPR repeat-containing p 99.7 2.4E-14 8.2E-19 132.0 24.1 238 115-355 10-267 (272)
36 3uq3_A Heat shock protein STI1 99.7 8.3E-15 2.8E-19 133.7 20.6 228 75-339 7-237 (258)
37 1xi4_A Clathrin heavy chain; a 99.6 1.9E-13 6.4E-18 145.5 31.5 315 11-364 1053-1376(1630)
38 3uq3_A Heat shock protein STI1 99.6 4.9E-14 1.7E-18 128.6 23.5 221 38-268 5-234 (258)
39 1xi4_A Clathrin heavy chain; a 99.6 9.2E-13 3.2E-17 140.3 35.1 316 19-367 1088-1440(1630)
40 2h6f_A Protein farnesyltransfe 99.6 5.7E-14 2E-18 135.5 22.3 244 108-355 97-365 (382)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-14 1.4E-18 130.5 19.7 215 18-236 16-244 (275)
42 4g1t_A Interferon-induced prot 99.6 1.7E-12 6E-17 129.8 32.6 303 37-343 50-406 (472)
43 2pl2_A Hypothetical conserved 99.6 1E-13 3.5E-18 123.3 20.4 192 107-303 4-211 (217)
44 3u4t_A TPR repeat-containing p 99.6 5E-13 1.7E-17 123.1 24.7 233 41-308 6-253 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-13 7.4E-18 125.7 22.2 242 84-366 16-269 (275)
46 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.6E-18 123.6 21.8 194 178-372 39-238 (252)
47 2vq2_A PILW, putative fimbrial 99.6 3.9E-13 1.3E-17 119.7 22.7 198 175-373 7-212 (225)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-12 4.6E-17 118.8 24.9 202 108-346 37-246 (252)
49 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.1E-18 123.7 18.2 171 178-350 59-234 (243)
50 3sf4_A G-protein-signaling mod 99.6 1.5E-13 5E-18 134.4 19.0 268 74-371 10-335 (406)
51 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.7E-17 116.2 23.2 205 107-348 7-221 (225)
52 1ouv_A Conserved hypothetical 99.5 1.7E-12 5.9E-17 119.8 24.7 220 38-269 6-250 (273)
53 4a1s_A PINS, partner of inscut 99.5 1.1E-13 3.7E-18 135.9 17.3 257 116-372 56-372 (411)
54 2h6f_A Protein farnesyltransfe 99.5 9.3E-13 3.2E-17 127.1 23.1 212 38-254 97-322 (382)
55 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-13 7.9E-18 123.0 17.9 199 174-374 21-224 (243)
56 3e4b_A ALGK; tetratricopeptide 99.5 1E-12 3.6E-17 130.5 23.7 344 12-374 8-389 (452)
57 3e4b_A ALGK; tetratricopeptide 99.5 5.9E-13 2E-17 132.3 21.9 311 44-374 9-353 (452)
58 3sf4_A G-protein-signaling mod 99.5 3.8E-13 1.3E-17 131.5 20.2 295 36-360 7-364 (406)
59 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.3E-18 129.7 17.4 266 77-372 9-332 (338)
60 1ouv_A Conserved hypothetical 99.5 6.9E-12 2.4E-16 115.7 26.7 229 107-374 5-253 (273)
61 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.9E-17 128.6 19.8 270 40-340 50-374 (411)
62 2ond_A Cleavage stimulation fa 99.5 1.4E-11 4.9E-16 115.8 26.5 217 125-344 33-276 (308)
63 3vtx_A MAMA; tetratricopeptide 99.5 5.2E-12 1.8E-16 108.9 20.7 164 207-373 5-171 (184)
64 3ro2_A PINS homolog, G-protein 99.5 2.6E-12 9E-17 121.7 19.9 272 39-340 6-334 (338)
65 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.3E-16 116.2 23.6 211 91-303 34-267 (308)
66 3ulq_A Response regulator aspa 99.4 9.9E-12 3.4E-16 120.8 22.3 225 114-338 109-368 (383)
67 4abn_A Tetratricopeptide repea 99.4 2.3E-12 8E-17 128.8 17.3 206 159-369 86-318 (474)
68 3vtx_A MAMA; tetratricopeptide 99.4 6.3E-12 2.2E-16 108.4 17.2 166 175-343 4-175 (184)
69 3ulq_A Response regulator aspa 99.4 1.3E-11 4.4E-16 120.0 19.4 224 147-371 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.4 9.5E-12 3.2E-16 124.4 18.3 210 89-304 84-319 (474)
71 4e6h_A MRNA 3'-END-processing 99.4 5.9E-10 2E-14 114.8 31.0 369 4-374 63-572 (679)
72 4gyw_A UDP-N-acetylglucosamine 99.4 1.4E-11 4.7E-16 128.4 18.9 162 207-371 9-173 (723)
73 3as5_A MAMA; tetratricopeptide 99.4 5.1E-11 1.7E-15 102.2 18.7 160 210-372 11-173 (186)
74 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-12 8.6E-17 120.6 10.8 166 37-202 26-221 (311)
75 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-11 6.2E-16 114.7 16.6 230 142-371 28-306 (311)
76 3q15_A PSP28, response regulat 99.3 3.1E-10 1.1E-14 110.0 24.1 224 114-337 107-364 (378)
77 1hz4_A MALT regulatory protein 99.3 1.3E-09 4.4E-14 105.3 27.7 194 179-372 96-322 (373)
78 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.8E-15 103.7 18.6 203 140-352 6-223 (228)
79 3as5_A MAMA; tetratricopeptide 99.3 2.1E-10 7.2E-15 98.3 18.3 167 176-344 8-179 (186)
80 3q15_A PSP28, response regulat 99.2 2.7E-10 9.1E-15 110.4 17.4 297 3-303 6-362 (378)
81 1hz4_A MALT regulatory protein 99.2 4.4E-09 1.5E-13 101.5 26.0 260 15-303 22-319 (373)
82 4i17_A Hypothetical protein; T 99.2 3.5E-10 1.2E-14 101.1 16.8 190 174-373 5-210 (228)
83 4e6h_A MRNA 3'-END-processing 99.2 2.4E-08 8.2E-13 102.8 31.7 221 129-353 330-584 (679)
84 4gyw_A UDP-N-acetylglucosamine 99.2 6.5E-10 2.2E-14 115.8 18.2 160 108-268 9-172 (723)
85 1qqe_A Vesicular transport pro 99.2 7.3E-10 2.5E-14 103.2 16.9 160 210-369 80-266 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 5.8E-15 106.3 12.3 196 176-371 43-280 (283)
87 1qqe_A Vesicular transport pro 99.2 1.4E-09 4.7E-14 101.3 17.9 165 178-342 79-273 (292)
88 3qky_A Outer membrane assembly 99.1 3.3E-09 1.1E-13 96.9 18.8 182 174-373 13-225 (261)
89 3mv2_B Coatomer subunit epsilo 99.1 1.7E-08 6E-13 92.5 22.1 174 195-373 85-283 (310)
90 4ga2_A E3 SUMO-protein ligase 99.1 2.2E-10 7.6E-15 95.0 7.1 139 217-358 7-149 (150)
91 3edt_B KLC 2, kinesin light ch 99.1 1.9E-09 6.3E-14 99.2 13.9 87 50-136 13-113 (283)
92 3qky_A Outer membrane assembly 99.1 6.7E-09 2.3E-13 94.8 17.4 200 140-359 14-248 (261)
93 2pzi_A Probable serine/threoni 99.0 9.8E-10 3.4E-14 114.8 12.9 168 187-358 402-583 (681)
94 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 82.1 16.5 128 210-371 4-131 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.8E-08 9.6E-13 88.5 19.6 182 176-375 4-216 (225)
96 3qou_A Protein YBBN; thioredox 99.0 6.3E-09 2.2E-13 96.5 15.7 175 193-370 103-282 (287)
97 3mv2_B Coatomer subunit epsilo 99.0 3.2E-08 1.1E-12 90.7 19.9 232 19-269 25-281 (310)
98 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 3.9E-13 82.0 15.2 96 279-374 3-100 (136)
99 2pzi_A Probable serine/threoni 99.0 2.3E-08 7.9E-13 104.4 20.1 189 152-345 402-609 (681)
100 2r5s_A Uncharacterized protein 98.9 7.7E-09 2.6E-13 88.2 12.4 156 212-370 11-171 (176)
101 2ifu_A Gamma-SNAP; membrane fu 98.9 2.4E-08 8.2E-13 93.5 16.4 154 208-364 77-253 (307)
102 2vsy_A XCC0866; transferase, g 98.9 1.1E-08 3.6E-13 104.9 15.0 159 189-350 2-169 (568)
103 3urz_A Uncharacterized protein 98.9 3.3E-08 1.1E-12 86.8 15.1 126 213-342 60-190 (208)
104 3qou_A Protein YBBN; thioredox 98.9 7.5E-08 2.6E-12 89.2 18.2 161 105-302 114-280 (287)
105 3dra_A Protein farnesyltransfe 98.9 1.3E-06 4.5E-11 80.8 26.3 158 190-350 124-300 (306)
106 2vsy_A XCC0866; transferase, g 98.9 2.9E-08 1E-12 101.6 16.5 146 154-303 2-154 (568)
107 2r5s_A Uncharacterized protein 98.9 3.3E-08 1.1E-12 84.2 13.8 157 9-169 8-172 (176)
108 3urz_A Uncharacterized protein 98.8 9.7E-08 3.3E-12 83.8 16.2 132 180-314 58-195 (208)
109 4ga2_A E3 SUMO-protein ligase 98.8 2E-08 6.8E-13 83.1 10.4 125 13-140 3-132 (150)
110 3rjv_A Putative SEL1 repeat pr 98.8 4.8E-07 1.6E-11 79.5 19.4 161 206-374 17-199 (212)
111 3gyz_A Chaperone protein IPGC; 98.8 3E-08 1E-12 81.8 10.3 102 272-373 30-134 (151)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 3E-07 1E-11 81.7 17.5 69 74-142 5-75 (225)
113 2ifu_A Gamma-SNAP; membrane fu 98.8 6.5E-08 2.2E-12 90.6 13.7 170 189-370 29-222 (307)
114 3u3w_A Transcriptional activat 98.8 1.1E-06 3.7E-11 81.5 21.8 160 212-371 80-265 (293)
115 3rjv_A Putative SEL1 repeat pr 98.8 9.8E-07 3.4E-11 77.5 20.2 168 93-269 6-196 (212)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.8E-07 9.5E-12 80.9 16.3 132 8-141 7-154 (213)
117 2uy1_A Cleavage stimulation fa 98.8 1.4E-06 4.8E-11 86.9 23.1 168 193-369 196-380 (493)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.7E-07 1.3E-11 80.1 16.9 145 179-342 9-154 (213)
119 2c2l_A CHIP, carboxy terminus 98.7 4.4E-08 1.5E-12 90.4 11.1 192 175-372 3-199 (281)
120 2uy1_A Cleavage stimulation fa 98.7 7E-06 2.4E-10 81.9 27.7 348 8-371 16-412 (493)
121 3dra_A Protein farnesyltransfe 98.7 6.5E-06 2.2E-10 76.1 25.5 216 49-268 43-285 (306)
122 4gco_A Protein STI-1; structur 98.7 1.5E-07 5.3E-12 75.0 12.3 106 243-351 15-123 (126)
123 2qfc_A PLCR protein; TPR, HTH, 98.7 9E-07 3.1E-11 82.1 18.9 163 209-371 77-265 (293)
124 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.8E-12 77.3 11.9 128 8-142 10-138 (151)
125 2vgx_A Chaperone SYCD; alterna 98.7 7.3E-08 2.5E-12 79.4 9.6 102 272-373 15-119 (148)
126 1p5q_A FKBP52, FK506-binding p 98.7 1.5E-08 5.3E-13 96.1 5.7 95 277-371 196-293 (336)
127 1a17_A Serine/threonine protei 98.7 7.1E-07 2.4E-11 74.6 15.1 127 242-371 14-145 (166)
128 1na0_A Designed protein CTPR3; 98.6 8.5E-07 2.9E-11 69.8 13.7 115 241-357 9-125 (125)
129 3q7a_A Farnesyltransferase alp 98.6 2.7E-05 9.2E-10 72.8 25.5 215 125-343 71-337 (349)
130 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.7E-11 70.0 13.6 103 38-142 13-115 (126)
131 2lni_A Stress-induced-phosphop 98.6 8.5E-07 2.9E-11 70.8 13.1 116 240-358 15-133 (133)
132 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.7E-11 69.8 13.6 117 240-359 11-130 (131)
133 2vgx_A Chaperone SYCD; alterna 98.6 1.9E-07 6.5E-12 76.9 8.7 114 230-346 10-126 (148)
134 2c2l_A CHIP, carboxy terminus 98.6 3.4E-07 1.2E-11 84.4 11.0 47 254-303 148-196 (281)
135 3u3w_A Transcriptional activat 98.5 2.5E-05 8.4E-10 72.3 23.7 155 114-268 81-264 (293)
136 4f3v_A ESX-1 secretion system 98.5 7.7E-07 2.6E-11 80.5 12.8 209 85-308 18-240 (282)
137 3gw4_A Uncharacterized protein 98.5 8.9E-07 3E-11 76.8 12.9 150 188-337 4-175 (203)
138 2fbn_A 70 kDa peptidylprolyl i 98.5 1.3E-07 4.4E-12 82.2 7.2 169 183-373 11-187 (198)
139 2xcb_A PCRH, regulatory protei 98.5 7.9E-07 2.7E-11 72.5 11.5 100 273-372 13-115 (142)
140 2xcb_A PCRH, regulatory protei 98.5 3.7E-07 1.3E-11 74.5 9.4 107 240-349 17-126 (142)
141 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.5E-11 74.1 12.9 126 218-346 21-152 (177)
142 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4.1E-11 67.5 11.5 99 276-374 5-108 (112)
143 3gw4_A Uncharacterized protein 98.5 3.1E-06 1.1E-10 73.3 15.1 153 218-371 3-175 (203)
144 2qfc_A PLCR protein; TPR, HTH, 98.5 2.4E-06 8.4E-11 79.1 15.2 158 181-338 80-266 (293)
145 4f3v_A ESX-1 secretion system 98.5 1.9E-06 6.5E-11 77.9 13.8 136 210-349 105-247 (282)
146 2e2e_A Formate-dependent nitri 98.5 5.8E-07 2E-11 76.3 10.0 120 252-374 21-146 (177)
147 3dss_A Geranylgeranyl transfer 98.5 2.6E-05 8.8E-10 72.6 21.6 226 120-350 41-316 (331)
148 1na0_A Designed protein CTPR3; 98.5 3.2E-06 1.1E-10 66.4 13.2 102 38-141 9-110 (125)
149 1a17_A Serine/threonine protei 98.5 3.1E-06 1.1E-10 70.5 13.6 126 209-337 15-145 (166)
150 3q7a_A Farnesyltransferase alp 98.4 5E-05 1.7E-09 71.0 22.7 177 41-221 57-256 (349)
151 2lni_A Stress-induced-phosphop 98.4 4.7E-06 1.6E-10 66.4 13.3 103 37-141 15-117 (133)
152 1hxi_A PEX5, peroxisome target 98.4 1E-06 3.6E-11 69.5 8.7 95 279-373 19-115 (121)
153 2vyi_A SGTA protein; chaperone 98.4 5E-06 1.7E-10 65.9 12.8 117 37-155 11-128 (131)
154 3upv_A Heat shock protein STI1 98.4 3.3E-06 1.1E-10 67.0 11.6 95 278-372 5-101 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.4 7.3E-06 2.5E-10 63.5 13.5 106 243-351 6-114 (118)
156 1p5q_A FKBP52, FK506-binding p 98.4 3.6E-06 1.2E-10 79.7 13.1 100 37-139 146-261 (336)
157 3sz7_A HSC70 cochaperone (SGT) 98.4 4.8E-06 1.6E-10 69.6 12.5 107 240-349 10-119 (164)
158 3q49_B STIP1 homology and U bo 98.4 4.9E-06 1.7E-10 66.9 12.0 97 276-372 8-106 (137)
159 2fbn_A 70 kDa peptidylprolyl i 98.4 8.7E-07 3E-11 76.9 7.9 131 9-140 6-154 (198)
160 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.6E-07 1.2E-11 90.6 6.0 127 242-371 269-414 (457)
161 2dba_A Smooth muscle cell asso 98.3 1.1E-05 3.7E-10 65.7 13.8 110 240-352 27-142 (148)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 2.4E-06 8.2E-11 71.5 9.9 98 276-373 10-109 (164)
163 3upv_A Heat shock protein STI1 98.3 8.4E-06 2.9E-10 64.6 12.5 98 39-138 5-102 (126)
164 1elw_A TPR1-domain of HOP; HOP 98.3 5.8E-06 2E-10 64.1 11.3 97 277-373 4-102 (118)
165 2kck_A TPR repeat; tetratricop 98.3 4.6E-06 1.6E-10 64.1 10.6 102 37-140 5-109 (112)
166 1wao_1 Serine/threonine protei 98.3 6.2E-06 2.1E-10 82.0 14.0 116 183-301 13-134 (477)
167 2dba_A Smooth muscle cell asso 98.3 8.4E-06 2.9E-10 66.3 12.7 98 276-373 27-129 (148)
168 4gcn_A Protein STI-1; structur 98.3 2.7E-06 9.4E-11 67.7 8.5 89 282-370 13-110 (127)
169 4b4t_Q 26S proteasome regulato 98.3 1.4E-05 4.8E-10 78.4 15.4 188 184-371 12-244 (434)
170 3q49_B STIP1 homology and U bo 98.2 8.7E-06 3E-10 65.4 11.1 100 239-341 7-109 (137)
171 4gcn_A Protein STI-1; structur 98.2 1.2E-05 4.1E-10 64.0 11.3 103 39-143 9-118 (127)
172 1wao_1 Serine/threonine protei 98.2 3.9E-06 1.3E-10 83.5 10.1 116 249-367 14-134 (477)
173 4b4t_Q 26S proteasome regulato 98.2 0.00044 1.5E-08 67.6 23.6 159 111-269 58-244 (434)
174 2xev_A YBGF; tetratricopeptide 98.2 9.7E-06 3.3E-10 64.3 9.6 61 311-371 41-104 (129)
175 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4E-10 63.7 10.0 107 39-146 5-117 (131)
176 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4.3E-10 63.2 10.0 98 40-140 19-117 (121)
177 1elr_A TPR2A-domain of HOP; HO 98.1 4.1E-05 1.4E-09 60.5 12.9 108 243-353 6-122 (131)
178 2xev_A YBGF; tetratricopeptide 98.1 4.1E-05 1.4E-09 60.6 12.9 100 41-143 5-111 (129)
179 1ihg_A Cyclophilin 40; ppiase 98.1 1.7E-05 5.9E-10 76.0 12.1 90 276-365 272-363 (370)
180 2hr2_A Hypothetical protein; a 98.1 1.3E-05 4.3E-10 65.6 9.3 62 311-372 59-131 (159)
181 3k9i_A BH0479 protein; putativ 98.1 3.5E-06 1.2E-10 66.0 5.9 82 290-371 3-89 (117)
182 3dss_A Geranylgeranyl transfer 98.1 0.00067 2.3E-08 63.1 22.0 217 153-373 41-305 (331)
183 3ro3_A PINS homolog, G-protein 98.1 3.1E-05 1.1E-09 63.7 11.5 93 279-371 51-157 (164)
184 3ro3_A PINS homolog, G-protein 98.1 2.7E-05 9.2E-10 64.1 10.9 96 244-339 52-159 (164)
185 3rkv_A Putative peptidylprolyl 98.1 1.7E-05 5.9E-10 66.0 9.4 64 310-373 64-127 (162)
186 2if4_A ATFKBP42; FKBP-like, al 98.0 9.9E-06 3.4E-10 76.7 8.3 147 208-373 180-329 (338)
187 3n71_A Histone lysine methyltr 98.0 3.1E-05 1.1E-09 76.6 12.0 124 250-373 318-465 (490)
188 3k9i_A BH0479 protein; putativ 98.0 5.7E-06 1.9E-10 64.7 5.1 91 254-345 3-97 (117)
189 2hr2_A Hypothetical protein; a 98.0 1.6E-05 5.6E-10 64.9 7.1 69 279-347 59-140 (159)
190 1dce_A Protein (RAB geranylger 98.0 0.00029 1E-08 71.3 17.9 169 190-361 43-244 (567)
191 3rkv_A Putative peptidylprolyl 97.9 6.8E-05 2.3E-09 62.3 10.7 104 38-142 11-131 (162)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 3.6E-05 1.2E-09 72.8 9.7 151 176-343 179-333 (338)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.8E-05 3.4E-09 73.0 12.4 138 37-196 267-405 (457)
194 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.1E-09 69.4 12.2 91 178-268 225-334 (370)
195 3ma5_A Tetratricopeptide repea 97.8 0.00012 3.9E-09 55.3 9.0 65 308-372 6-70 (100)
196 2l6j_A TPR repeat-containing p 97.8 7.1E-05 2.4E-09 57.3 7.7 91 276-366 3-101 (111)
197 2kat_A Uncharacterized protein 97.8 8.7E-05 3E-09 57.5 8.1 78 295-372 3-82 (115)
198 1na3_A Designed protein CTPR2; 97.7 0.00017 5.9E-09 52.7 8.9 81 277-357 9-91 (91)
199 2l6j_A TPR repeat-containing p 97.6 5.8E-05 2E-09 57.8 5.3 93 208-303 5-104 (111)
200 3n71_A Histone lysine methyltr 97.6 0.00039 1.4E-08 68.7 12.5 25 176-200 393-417 (490)
201 1zu2_A Mitochondrial import re 97.5 6.9E-05 2.3E-09 61.1 3.9 86 289-374 14-122 (158)
202 3bee_A Putative YFRE protein; 97.5 0.00063 2.2E-08 50.3 8.9 69 307-375 4-75 (93)
203 2kat_A Uncharacterized protein 97.5 0.00027 9.3E-09 54.6 6.9 79 260-341 4-85 (115)
204 1dce_A Protein (RAB geranylger 97.5 0.011 3.8E-07 59.8 20.5 134 124-258 89-243 (567)
205 1klx_A Cysteine rich protein B 97.4 0.0022 7.5E-08 51.4 12.2 90 283-374 31-128 (138)
206 1zu2_A Mitochondrial import re 97.4 0.00028 9.6E-09 57.5 6.3 99 50-150 14-133 (158)
207 3qwp_A SET and MYND domain-con 97.4 0.00058 2E-08 66.5 9.6 116 284-417 294-427 (429)
208 1klx_A Cysteine rich protein B 97.3 0.0055 1.9E-07 49.1 13.0 112 221-340 9-128 (138)
209 3ma5_A Tetratricopeptide repea 97.3 0.00096 3.3E-08 50.0 7.7 61 208-268 8-68 (100)
210 1na3_A Designed protein CTPR2; 97.3 0.0034 1.2E-07 45.5 10.6 60 209-268 11-70 (91)
211 3mkq_A Coatomer beta'-subunit; 97.2 0.006 2E-07 64.9 16.4 152 16-200 608-760 (814)
212 3ly7_A Transcriptional activat 97.2 0.0098 3.4E-07 55.6 15.3 48 204-251 191-243 (372)
213 3qww_A SET and MYND domain-con 97.1 0.00068 2.3E-08 65.9 7.0 83 289-371 310-410 (433)
214 3qww_A SET and MYND domain-con 97.1 0.003 1E-07 61.4 11.3 93 253-345 310-423 (433)
215 3qwp_A SET and MYND domain-con 97.1 0.0049 1.7E-07 59.9 12.7 101 246-346 292-413 (429)
216 2kc7_A BFR218_protein; tetratr 96.9 0.0031 1.1E-07 46.8 7.2 63 284-346 7-72 (99)
217 2kc7_A BFR218_protein; tetratr 96.8 0.0073 2.5E-07 44.7 9.0 85 247-342 6-94 (99)
218 3ly7_A Transcriptional activat 96.7 0.018 6.1E-07 53.8 12.0 158 11-171 168-340 (372)
219 1wy6_A Hypothetical protein ST 96.5 0.2 6.7E-06 38.9 15.5 139 219-375 19-157 (172)
220 1pc2_A Mitochondria fission pr 96.2 0.038 1.3E-06 44.3 10.1 65 307-371 30-99 (152)
221 3mkq_A Coatomer beta'-subunit; 96.1 0.1 3.4E-06 55.3 16.1 101 11-134 633-733 (814)
222 3bee_A Putative YFRE protein; 96.1 0.053 1.8E-06 39.7 9.8 67 73-140 6-75 (93)
223 3lvg_A Clathrin heavy chain 1; 96.0 2.2E-06 7.6E-11 81.3 -17.8 261 37-329 53-324 (624)
224 3u64_A Protein TP_0956; tetrat 96.0 0.032 1.1E-06 50.0 9.4 87 293-379 179-276 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.9 0.043 1.5E-06 41.2 8.8 72 277-348 5-85 (104)
226 3lvg_A Clathrin heavy chain 1; 95.7 0.00065 2.2E-08 64.9 -3.0 237 6-265 53-315 (624)
227 1pc2_A Mitochondria fission pr 95.6 0.07 2.4E-06 42.8 9.1 85 55-141 15-104 (152)
228 3mkq_B Coatomer subunit alpha; 95.6 0.42 1.4E-05 39.3 13.8 129 184-335 13-141 (177)
229 3mkq_B Coatomer subunit alpha; 95.2 1.1 3.6E-05 37.0 16.9 103 82-203 14-116 (177)
230 2v5f_A Prolyl 4-hydroxylase su 95.2 0.092 3.2E-06 39.3 8.2 68 75-142 7-80 (104)
231 4ady_A RPN2, 26S proteasome re 94.5 5.7 0.0002 42.0 21.9 90 9-101 147-258 (963)
232 4h7y_A Dual specificity protei 94.4 0.14 4.6E-06 40.7 7.3 55 321-375 72-126 (161)
233 3u64_A Protein TP_0956; tetrat 94.4 0.44 1.5E-05 42.7 11.5 90 89-180 179-281 (301)
234 4h7y_A Dual specificity protei 94.3 0.86 3E-05 36.2 11.5 104 34-139 9-125 (161)
235 1wy6_A Hypothetical protein ST 93.2 2.3 7.9E-05 33.0 13.8 139 120-274 19-157 (172)
236 4gns_B Protein CSD3, chitin bi 93.2 1.2 4E-05 46.1 13.7 52 319-370 347-398 (754)
237 1nzn_A CGI-135 protein, fissio 92.7 0.33 1.1E-05 37.4 6.8 87 54-141 17-107 (126)
238 1nzn_A CGI-135 protein, fissio 92.1 1.4 4.6E-05 34.0 9.5 73 275-347 33-112 (126)
239 2ff4_A Probable regulatory pro 91.5 0.52 1.8E-05 44.9 8.2 70 311-380 173-247 (388)
240 2uwj_G Type III export protein 90.9 3.5 0.00012 29.9 10.4 90 153-246 18-107 (115)
241 2p58_C Putative type III secre 90.6 3.7 0.00013 29.8 11.3 90 153-246 19-108 (116)
242 4fhn_B Nucleoporin NUP120; pro 90.1 7.8 0.00027 42.7 17.0 162 78-259 817-989 (1139)
243 4fhn_B Nucleoporin NUP120; pro 90.0 6.7 0.00023 43.2 16.3 143 11-155 816-985 (1139)
244 4gns_B Protein CSD3, chitin bi 89.4 2.9 9.8E-05 43.3 11.9 127 76-203 251-398 (754)
245 3ffl_A Anaphase-promoting comp 89.3 2.4 8.2E-05 34.3 8.9 52 182-233 26-89 (167)
246 3lpz_A GET4 (YOR164C homolog); 89.0 14 0.00047 33.9 20.5 130 9-151 37-177 (336)
247 4ady_A RPN2, 26S proteasome re 88.8 27 0.00092 37.0 20.1 155 151-310 500-662 (963)
248 2ff4_A Probable regulatory pro 88.5 3.1 0.00011 39.5 10.8 69 211-279 175-247 (388)
249 1v54_E Cytochrome C oxidase po 87.4 2.7 9.3E-05 30.6 7.2 60 56-116 28-87 (109)
250 4b4t_P 26S proteasome regulato 87.1 15 0.00051 35.5 14.9 179 190-371 30-246 (445)
251 1zbp_A Hypothetical protein VP 86.6 9 0.00031 33.7 11.6 52 217-268 7-58 (273)
252 2qx5_A Nucleoporin NIC96; mRNA 86.3 19 0.00063 36.6 15.4 41 9-50 155-198 (661)
253 1v54_E Cytochrome C oxidase po 85.9 5.3 0.00018 29.1 8.0 61 223-285 26-87 (109)
254 1y8m_A FIS1; mitochondria, unk 85.8 11 0.00038 29.5 13.2 48 325-372 58-106 (144)
255 1qsa_A Protein (soluble lytic 85.3 34 0.0011 34.6 28.1 287 19-337 18-347 (618)
256 3txn_A 26S proteasome regulato 83.0 32 0.0011 32.4 15.8 58 246-303 104-165 (394)
257 3o48_A Mitochondria fission 1 83.0 6.7 0.00023 30.3 8.1 74 68-141 35-111 (134)
258 3ffl_A Anaphase-promoting comp 82.1 15 0.00052 29.6 10.2 31 108-138 122-152 (167)
259 3o48_A Mitochondria fission 1 81.9 13 0.00044 28.7 9.3 46 326-371 60-106 (134)
260 4b4t_P 26S proteasome regulato 80.9 41 0.0014 32.3 17.0 180 122-303 30-244 (445)
261 2y69_E Cytochrome C oxidase su 80.2 7.2 0.00025 30.1 7.2 42 59-100 74-115 (152)
262 3eiq_C Programmed cell death p 78.5 31 0.001 32.0 12.5 60 179-238 220-284 (358)
263 2y69_E Cytochrome C oxidase su 77.9 15 0.00052 28.4 8.3 60 224-285 70-130 (152)
264 1zbp_A Hypothetical protein VP 75.3 6.2 0.00021 34.8 6.5 58 285-342 5-64 (273)
265 3txn_A 26S proteasome regulato 74.5 58 0.002 30.6 16.6 90 281-370 103-208 (394)
266 2wpv_A GET4, UPF0363 protein Y 73.4 53 0.0018 29.7 18.6 112 10-132 36-158 (312)
267 3esl_A Checkpoint serine/threo 71.5 40 0.0014 28.2 10.2 80 296-376 63-148 (202)
268 1wdy_A 2-5A-dependent ribonucl 70.4 23 0.0008 30.9 9.7 55 44-106 8-65 (285)
269 1y8m_A FIS1; mitochondria, unk 67.3 43 0.0015 26.2 12.3 72 70-141 36-110 (144)
270 2p58_C Putative type III secre 67.3 13 0.00044 27.0 5.4 51 47-103 49-99 (116)
271 2uwj_G Type III export protein 66.6 12 0.00042 27.1 5.1 51 47-103 48-98 (115)
272 4b4t_R RPN7, 26S proteasome re 66.1 44 0.0015 31.9 11.0 93 278-370 132-235 (429)
273 1n11_A Ankyrin; clathrin, BAND 66.0 44 0.0015 31.6 11.2 337 12-377 16-371 (437)
274 3lpz_A GET4 (YOR164C homolog); 64.6 85 0.0029 28.7 21.6 167 178-371 37-215 (336)
275 2qx5_A Nucleoporin NIC96; mRNA 63.9 1.3E+02 0.0044 30.5 14.8 79 46-135 302-383 (661)
276 3mv2_A Coatomer subunit alpha; 63.5 77 0.0026 28.7 11.0 60 299-372 195-256 (325)
277 4b4t_R RPN7, 26S proteasome re 61.7 39 0.0013 32.3 9.7 98 39-136 132-236 (429)
278 3ltm_A Alpha-REP4; protein eng 59.3 75 0.0026 26.2 16.9 184 21-219 16-200 (211)
279 1qsa_A Protein (soluble lytic 58.5 1.6E+02 0.0053 29.7 32.4 77 11-89 76-152 (618)
280 3hra_A Ankyrin repeat family p 58.0 69 0.0024 26.0 9.8 151 15-175 10-172 (201)
281 3ltm_A Alpha-REP4; protein eng 57.5 80 0.0027 26.1 16.5 172 71-255 31-202 (211)
282 1wdy_A 2-5A-dependent ribonucl 57.2 47 0.0016 28.9 9.0 87 10-106 5-98 (285)
283 4a1g_A Mitotic checkpoint seri 56.7 72 0.0025 25.3 9.0 49 328-376 84-134 (152)
284 2rfa_A Transient receptor pote 56.0 52 0.0018 27.7 8.8 153 13-172 6-182 (232)
285 1k1a_A B-cell lymphoma 3-encod 55.9 67 0.0023 27.0 9.6 84 47-134 15-102 (241)
286 3esl_A Checkpoint serine/threo 55.4 91 0.0031 26.0 10.3 55 155-209 93-148 (202)
287 2k0q_A Putative uncharacterize 55.2 3.1 0.00011 27.5 0.5 22 488-509 8-29 (74)
288 2nsz_A Programmed cell death p 54.5 48 0.0016 25.4 7.3 62 9-70 9-75 (129)
289 1n11_A Ankyrin; clathrin, BAND 54.5 66 0.0023 30.4 10.1 299 46-376 19-337 (437)
290 3kea_A K1L; tropism, ANK repea 54.3 62 0.0021 28.5 9.3 93 282-378 131-223 (285)
291 2wpv_A GET4, UPF0363 protein Y 52.3 1.3E+02 0.0046 27.1 21.5 168 178-371 35-216 (312)
292 2wvi_A Mitotic checkpoint seri 51.1 94 0.0032 24.9 9.3 49 328-376 79-129 (164)
293 2ion_A PDCD4, programmed cell 50.3 23 0.00078 28.2 4.9 62 9-70 11-77 (152)
294 3eu9_A Huntingtin-interacting 48.6 62 0.0021 27.1 8.1 108 16-132 15-130 (240)
295 3ltj_A Alpharep-4; protein eng 47.8 1.1E+02 0.0038 24.9 17.4 177 28-218 18-194 (201)
296 3bqo_A Telomeric repeat-bindin 47.4 1E+02 0.0034 25.6 8.2 51 293-343 94-151 (211)
297 2nsz_A Programmed cell death p 47.1 66 0.0023 24.6 7.0 60 179-238 10-74 (129)
298 4b4t_S RPN3, 26S proteasome re 45.4 2.3E+02 0.0078 27.7 14.5 63 176-238 231-301 (523)
299 3kea_A K1L; tropism, ANK repea 45.1 55 0.0019 28.9 7.4 8 23-30 12-19 (285)
300 2l0z_A Glycoprotein G2; zinc-b 44.6 6.7 0.00023 22.7 0.7 11 501-511 19-29 (42)
301 2zu6_B Programmed cell death p 43.9 68 0.0023 28.9 7.6 232 10-258 6-254 (307)
302 2d2s_A Exocyst complex compone 43.6 1.1E+02 0.0039 26.2 8.7 90 43-135 23-118 (235)
303 4aez_C MAD3, mitotic spindle c 41.2 1.6E+02 0.0056 24.9 9.0 45 92-136 133-178 (223)
304 3ygs_P Procaspase 9; apoptosis 41.1 40 0.0014 24.3 4.6 38 190-227 51-88 (97)
305 3aji_A 26S proteasome non-ATPa 40.2 81 0.0028 26.3 7.5 110 13-132 9-127 (231)
306 4gq2_M Nucleoporin NUP120; bet 40.2 2.8E+02 0.0095 29.6 12.9 128 13-154 816-949 (950)
307 4a1g_A Mitotic checkpoint seri 39.7 1.4E+02 0.0048 23.6 10.1 51 159-209 83-134 (152)
308 3ygs_P Procaspase 9; apoptosis 38.0 34 0.0012 24.6 3.8 37 53-93 52-88 (97)
309 3mv2_A Coatomer subunit alpha; 37.6 2.3E+02 0.008 25.6 10.4 107 118-238 124-238 (325)
310 3b7b_A Euchromatic histone-lys 36.9 65 0.0022 27.1 6.3 19 14-32 15-33 (237)
311 2ion_A PDCD4, programmed cell 36.7 71 0.0024 25.3 5.8 60 179-238 12-76 (152)
312 4b4t_S RPN3, 26S proteasome re 36.4 1.1E+02 0.0037 29.9 8.0 61 242-303 232-296 (523)
313 2p1h_A APAF-1, apoptotic prote 35.0 1.2E+02 0.004 21.4 6.7 62 161-226 25-86 (94)
314 1bpo_A Protein (clathrin); cla 34.2 3.2E+02 0.011 26.2 12.0 138 155-304 343-483 (494)
315 3aji_A 26S proteasome non-ATPa 34.1 93 0.0032 25.9 6.9 19 45-63 10-28 (231)
316 3ljn_A Hypothetical protein; a 33.7 1.7E+02 0.0058 26.6 9.1 19 115-133 88-106 (364)
317 2fe3_A Peroxide operon regulat 32.8 1.3E+02 0.0043 23.4 6.8 47 247-294 27-73 (145)
318 1k1a_A B-cell lymphoma 3-encod 32.3 1.3E+02 0.0044 25.2 7.5 53 80-132 13-67 (241)
319 3t8k_A Uncharacterized protein 31.6 1.6E+02 0.0056 23.7 7.7 91 17-108 13-109 (186)
320 1bd8_A P19INK4D CDK4/6 inhibit 31.6 71 0.0024 24.6 5.3 18 15-32 7-24 (156)
321 3bu8_A Telomeric repeat-bindin 29.7 2.4E+02 0.0081 23.8 7.8 52 89-140 88-146 (235)
322 1ug3_A EIF4GI, eukaryotic prot 29.7 1.1E+02 0.0038 27.9 6.8 25 111-135 14-38 (339)
323 3ljn_A Hypothetical protein; a 29.6 1.4E+02 0.0048 27.2 7.7 91 11-106 21-114 (364)
324 2pk8_A Uncharacterized protein 29.2 39 0.0013 23.9 2.6 48 400-455 13-60 (103)
325 1oyz_A Hypothetical protein YI 29.1 2.8E+02 0.0095 23.9 23.0 18 174-191 140-157 (280)
326 3eu9_A Huntingtin-interacting 29.0 1.1E+02 0.0036 25.6 6.3 82 290-372 152-236 (240)
327 3jxi_A Vanilloid receptor-rela 28.6 62 0.0021 27.8 4.8 51 14-64 9-72 (260)
328 2fe3_A Peroxide operon regulat 28.2 1.3E+02 0.0046 23.3 6.2 60 64-124 13-72 (145)
329 3hra_A Ankyrin repeat family p 27.3 1.8E+02 0.0063 23.3 7.4 14 363-376 158-171 (201)
330 3jxi_A Vanilloid receptor-rela 27.1 1.5E+02 0.005 25.3 7.0 25 48-72 12-36 (260)
331 3eiq_C Programmed cell death p 27.0 3.7E+02 0.013 24.7 13.8 23 245-267 221-243 (358)
332 3d9h_A CDNA FLJ77766, highly s 26.7 1.6E+02 0.0054 25.8 7.2 90 7-106 12-118 (285)
333 2wvi_A Mitotic checkpoint seri 26.7 2.5E+02 0.0084 22.5 10.4 54 55-108 77-131 (164)
334 4gq2_M Nucleoporin NUP120; bet 26.3 3.9E+02 0.013 28.5 11.2 125 79-221 816-950 (950)
335 2etb_A Transient receptor pote 26.3 2.1E+02 0.007 24.3 7.8 26 47-72 8-33 (256)
336 2xig_A Ferric uptake regulatio 25.9 1.8E+02 0.0061 22.7 6.5 46 247-293 32-77 (150)
337 2lo3_A SAGA-associated factor 25.8 16 0.00055 21.4 0.2 10 468-477 16-25 (44)
338 2d2s_A Exocyst complex compone 25.5 2.7E+02 0.0093 23.8 8.1 23 79-101 24-46 (235)
339 4aez_C MAD3, mitotic spindle c 24.9 3.2E+02 0.011 23.2 8.3 51 224-275 131-183 (223)
340 1ug3_A EIF4GI, eukaryotic prot 24.3 4E+02 0.014 24.1 9.6 27 10-36 14-40 (339)
341 1s6c_A KV4 potassium channel-i 24.1 2.6E+02 0.009 21.9 9.2 26 25-50 22-47 (183)
342 2r9g_A AAA ATPase, central reg 23.4 3.2E+02 0.011 22.7 8.7 62 42-104 15-84 (204)
343 4ets_A Ferric uptake regulatio 23.3 1.6E+02 0.0054 23.5 5.8 69 225-294 15-86 (162)
344 2xig_A Ferric uptake regulatio 23.2 1.8E+02 0.0061 22.7 6.1 61 63-124 17-77 (150)
345 3ltj_A Alpharep-4; protein eng 23.0 3E+02 0.01 22.1 19.7 90 174-267 88-177 (201)
346 3twr_A Tankyrase-2; ankyrin re 22.9 2.6E+02 0.0089 21.5 8.3 111 13-132 11-129 (165)
347 2yru_A Steroid receptor RNA ac 22.9 84 0.0029 23.6 3.7 43 60-102 48-90 (118)
348 2hgo_A CASSIICOLIN; toxin, dis 22.9 16 0.00055 18.3 -0.2 13 500-512 8-22 (27)
349 3v30_A DNA-binding protein rfx 22.3 2.7E+02 0.0094 21.5 7.4 110 14-132 6-123 (172)
350 1mzb_A Ferric uptake regulatio 21.9 2.2E+02 0.0074 21.7 6.2 60 64-124 9-69 (136)
351 2qfz_A TBC1 domain family memb 21.7 2.1E+02 0.0073 26.0 7.2 82 55-140 189-276 (345)
352 2b7e_A PRE-mRNA processing pro 21.1 98 0.0033 19.9 3.2 30 54-83 2-31 (59)
353 2p1h_A APAF-1, apoptotic prote 20.9 1E+02 0.0034 21.8 3.8 36 51-90 49-84 (94)
354 1oyz_A Hypothetical protein YI 20.8 4E+02 0.014 22.8 23.7 180 32-222 31-221 (280)
355 3v31_A Ankyrin repeat family A 20.4 3E+02 0.01 21.2 9.1 110 14-132 7-123 (167)
356 1s6c_A KV4 potassium channel-i 20.4 3.1E+02 0.011 21.5 10.4 8 296-303 142-149 (183)
357 3hzj_A Rabgap1L, RAB GTPase-ac 20.3 4.5E+02 0.016 23.3 11.1 109 53-165 130-251 (310)
358 2o03_A Probable zinc uptake re 20.3 1.5E+02 0.005 22.5 4.9 42 214-255 17-59 (131)
359 2qq8_A TBC1 domain family memb 20.1 2.4E+02 0.0082 25.6 7.1 83 53-139 169-259 (334)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-35 Score=304.35 Aligned_cols=365 Identities=12% Similarity=0.049 Sum_probs=321.9
Q ss_pred CCCchhHHHHHHHHHHccCChHHHHHHHccCCCC-------------------CchHHHHHHHHHHhcCCchHHHHHHHH
Q 043142 3 FGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQR-------------------NLFLWNVLIRAYAWNGPYEVAIELYYR 63 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 63 (512)
.++++.+++.++.+|.++|++++|+++|+++.+. ++.+|+.++.+|.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3578889999999999999999999999964333 478899999999999999999999999
Q ss_pred HHHCCCCCCcc-hHHHH--------------------------------------HHHHhccCChHHHHHHHHHHHHhCC
Q 043142 64 LLEIGLVPDNF-TFPFA--------------------------------------LKACSALSAIEEGRRIHEDVIRNKW 104 (512)
Q Consensus 64 m~~~g~~p~~~-t~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~ 104 (512)
|.+.+ |+.. .+..+ +..|.+.|++++|.++|+.+.+.
T Consensus 226 ~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 301 (597)
T 2xpi_A 226 ALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-- 301 (597)
T ss_dssp HHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--
T ss_pred HHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--
Confidence 98753 4432 22222 44556778889999999888765
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
+++..+++.++.+|.+.|++++|.++|+++.+.+| +..++..++.++...|++++|..+++.+.+.. +.+..+++.++
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 58899999999999999999999999999998777 55689999999999999999999999998654 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHH
Q 043142 184 DMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a 260 (512)
.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+..+++..++..++.+|.+.|++++|
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998753 45789999999999999999999999999988778899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHHcCCHHHHHHH
Q 043142 261 RMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPD--PGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
.++|+.+.+.. ..+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|.+.
T Consensus 461 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998542 337889999999999999999999999988 44777 67999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+...
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999987643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=300.07 Aligned_cols=361 Identities=12% Similarity=-0.013 Sum_probs=319.0
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKA 82 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 82 (512)
+++..++.++..|.+.|++++|+.+|+++. .|+..+|+.++.+|.+.|++++|+.+|+++.. ..++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 577889999999999999999999999985 37888999999999999999999999999864 35788899999999
Q ss_pred HhccCChHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH-HHH
Q 043142 83 CSALSAIEEGRRIHEDVIRN---------------KWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT-LVT 146 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~~ 146 (512)
+.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+|+..+ +..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999853211 22345889999999999999999999999999998886543 222
Q ss_pred H--------------------------------------HHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 043142 147 V--------------------------------------ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK 188 (512)
Q Consensus 147 l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 188 (512)
+ +..|.+.|++++|.++++.+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 44556778899999999988776 5889999999999999
Q ss_pred cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 189 CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.|++++|.++|+++.+ .+..+|+.++.+|.+.|+.++|.++|+++....+.+..++..++..|.+.|++++|..+|+
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999863 4678999999999999999999999999997777889999999999999999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
++.+. .| +..+|+.++.+|.+.|++++|+++|+++ ... ++..+|..++.+|...|++++|.+.|+++.+..|.+
T Consensus 398 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 398 KSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99754 45 6889999999999999999999999988 333 467799999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5e-27 Score=229.90 Aligned_cols=354 Identities=12% Similarity=0.029 Sum_probs=313.4
Q ss_pred HHHHHHccCChHHHHHHHccCC--CC-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 043142 13 LVHLYSACDCLHNAHQLFDRIP--QR-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI 89 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 89 (512)
+...+.+.|++++|++.|+++. .| +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4556778999999999998864 23 56677888888999999999999999988753 34567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
++|.+.|+++++.. +.+...|..+...|.+.|++++|.+.|+++.+.+|+.. .+..+...+...|++++|.+.+..+.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999875 45677899999999999999999999999999999765 46667778889999999999999999
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFV 245 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~ 245 (512)
+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.....+.+..++.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 874 45678999999999999999999999999864 34678999999999999999999999999887777788999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHhHHHHHHHHHHHc
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV-KPDPGVWGALLNSCKLH 322 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~ 322 (512)
.+..++...|++++|...|+.+.+. .| +..+|..+...|.+.|++++|.+.++++ .. .++..+|..+...+...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999753 56 5788999999999999999999999988 22 34667999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 323 GHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5e-29 Score=249.31 Aligned_cols=197 Identities=11% Similarity=0.090 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---------hH
Q 043142 56 VAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC---------VV 125 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~ 125 (512)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445556666666554433 4677777777788888888888888777777788888888777776654 45
Q ss_pred HHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 126 NARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 126 ~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
.|.++|++|.+.+ ||..||+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555443 55555555555555555555555555555555555555555555555555555555555555553
Q ss_pred ----CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHh
Q 043142 204 ----EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACS 252 (512)
Q Consensus 204 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~ 252 (512)
.||..+|++||.+|++.|+.++|.++|++|++.+. |+..||+.++..|+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 23445555555555555555555555555555555 55555555555444
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3e-26 Score=224.39 Aligned_cols=347 Identities=14% Similarity=0.127 Sum_probs=307.6
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHH
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALK 81 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 81 (512)
++..+..+...+.+.|++++|...++... +.+..+|+.+...|.+.|++++|++.|+++... .|+. .+|..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHH
Confidence 45577788888999999999999998754 347789999999999999999999999999874 4554 47899999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQG 160 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a 160 (512)
++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+.+|+ ..++..+...+...|++++|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999885 445677888999999999999999999999998886 46788999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
...++.+++.. +.+...+..+...+...|++++|...|++..+ .+..+|..+...|...|++++|++.|+++....
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999875 45678899999999999999999999998653 346889999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHH
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGAL 315 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 315 (512)
+.+..++..+..++.+.|++++|...|+.+.+. .+++..++..+...+.+.|++++|.+.++++ ...|+ ..+|..+
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 777888999999999999999999999999865 2347889999999999999999999999988 44554 5689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
...+...|++++|...++++++..|.++..|..+...+...|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999988877653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.4e-28 Score=240.47 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=163.8
Q ss_pred HHHHHHccCCCC-----CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC---------hH
Q 043142 25 NAHQLFDRIPQR-----NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA---------IE 90 (512)
Q Consensus 25 ~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~ 90 (512)
.+..++.++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555532 2345788899999999999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--CChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--PSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
.|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|.+.+ ||..||+++|.+|++.|++++|.++|+.|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998875 899999999999999999999999999999
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHHHHHc
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR----EKRVVSWNAMITGYAMH 220 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~ 220 (512)
+.|+.||..+|++||.+|++.|++++|.++|++|. .++..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999986 46788999999888764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-23 Score=208.76 Aligned_cols=310 Identities=13% Similarity=0.074 Sum_probs=269.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|.+.++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 67789999999999999999999999998753 3356788889999999999999999999999886 557889999999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChh----HHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCchHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEA----TLVTV------------ISASADIAALPQGRELHGFSWRHRFELNVKVKT 180 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~----t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 180 (512)
.|.+.|++++|.+.|+++.+.+|+.. .+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 99999999999999999999988763 44444 444788999999999999998864 55788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHH----------
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGV---------- 247 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l---------- 247 (512)
.+..+|.+.|++++|..+|+++.+ .+..+|..+...|...|++++|+..|+++....+.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999863 4578999999999999999999999999987766555555444
Q ss_pred --HHHHhcCCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 043142 248 --LSACSRGGLFDEGRMFFESMVRDYHIDPS-----VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNS 318 (512)
Q Consensus 248 --l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 318 (512)
..++.+.|++++|..+|+.+.+. .|+ ..++..+..++.+.|++++|+..++++ ...| +...|..+..+
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 78899999999999999999864 554 458899999999999999999999987 4445 56799999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
|...|++++|...++++++.+|.++..+..+..+
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999998888843
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=213.61 Aligned_cols=360 Identities=12% Similarity=0.007 Sum_probs=307.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC--CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP--QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKAC 83 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 83 (512)
...+..+...|.+.|++++|++.|+++. .||...|..+..+|.+.|++++|+..|+++.+.+ |+ ..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 3456777888999999999999999975 3789999999999999999999999999998854 44 46888899999
Q ss_pred hccCChHHHHHHHHHHHHhCCCC---------------------------------------------------------
Q 043142 84 SALSAIEEGRRIHEDVIRNKWET--------------------------------------------------------- 106 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~--------------------------------------------------------- 106 (512)
...|++++|.+.|+.+.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988765211
Q ss_pred ---------------------ChhHHHHHHHHHHh---CCChHHHHHHHHhhhh-----C--CC--------ChhHHHHH
Q 043142 107 ---------------------DVFVGAALIDMYAK---CSCVVNARQVFDKILE-----R--DP--------SEATLVTV 147 (512)
Q Consensus 107 ---------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--~p--------d~~t~~~l 147 (512)
+...+..+...+.. .|++++|...|+++.+ . +| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12223333333443 8999999999999987 4 33 23567788
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChH
Q 043142 148 ISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHST 224 (512)
Q Consensus 148 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 224 (512)
...+...|++++|...+..+.+.... ..++..+...|...|++++|...|+.+.+. +...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987644 888999999999999999999999987643 4678999999999999999
Q ss_pred HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 225 KALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 225 ~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
+|+..|++.....+.+..++..+...+...|++++|..+++.+.+. .| +...+..+...|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887777788999999999999999999999999865 34 6788999999999999999999999887
Q ss_pred ----CCCCC----HhHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 304 ----RVKPD----PGVWGALLNSCKL---HGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 304 ----~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+..++ ...|..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3488999999999 999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 043142 373 G 373 (512)
Q Consensus 373 g 373 (512)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.8e-22 Score=201.37 Aligned_cols=332 Identities=11% Similarity=0.019 Sum_probs=274.5
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK 81 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 81 (512)
.++..+..+...|.+.|++++|+.+|+++. +.+..+|..+..+|.+.|++++|+..|+++.+.+. .+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 356688999999999999999999999864 34788999999999999999999999999988642 24568888999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCh---hHHHHH------------HHHHHhCCChHHHHHHHHhhhhCCC-ChhHHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDV---FVGAAL------------IDMYAKCSCVVNARQVFDKILERDP-SEATLV 145 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~ 145 (512)
++...|++++|.+.++.+++.. +.+. ..+..+ ...|.+.|++++|...|+++.+.+| +..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999998865 3344 566555 4448999999999999999998887 456788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CchHHHHH---------
Q 043142 146 TVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K-RVVSWNAM--------- 213 (512)
Q Consensus 146 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------- 213 (512)
.+..++...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ + +...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998864 45788999999999999999999999998863 3 34445444
Q ss_pred ---HHHHHHcCChHHHHHHHHHhHHCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 214 ---ITGYAMHGHSTKALDLFEKMKDEVQPD----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 214 ---i~~~~~~g~~~~A~~~~~~m~~~~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
...+...|++++|+..|+++....+.+ ...+..+..++.+.|++++|...++.+.+. .| +...+..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 788999999999999999998865533 447888899999999999999999999754 45 6889999999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHhcCCCC
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNS------------CKLHG-----HVKLAELALEK-LIELEPHD 342 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~ 342 (512)
+|...|++++|...++++ ...|+. ..+..+..+ |...| +.+++.+.+++ .++..|++
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999988 556654 456555533 33333 56777888886 66666653
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.4e-21 Score=199.46 Aligned_cols=361 Identities=14% Similarity=0.082 Sum_probs=292.9
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
...+..+...|.+.|++++|++.|+++. +.++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3467788899999999999999999864 3478899999999999999999999999998854 22456788888999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCh-------------------------------------h-----------------
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDV-------------------------------------F----------------- 109 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~-------------------------------------~----------------- 109 (512)
...|++++|.+.++.+ .....+.. .
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998633 21111000 0
Q ss_pred -------------HHHHHHHHHHhC--------CChHHHHHHHHhhhhCCCCh--------hHHHHHHHHHhccCChHHH
Q 043142 110 -------------VGAALIDMYAKC--------SCVVNARQVFDKILERDPSE--------ATLVTVISASADIAALPQG 160 (512)
Q Consensus 110 -------------~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~pd~--------~t~~~ll~~~~~~~~~~~a 160 (512)
....+...+... |++++|..+|+++.+.+|+. .++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 222232222222 47899999999999988874 2466667778889999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
...+..+.+.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|++.....
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999875 4478899999999999999999999998753 456789999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCC----C
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKP----D 308 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~ 308 (512)
+.+...+..+...+...|++++|..+++.+.+. .| +...+..+...|.+.|++++|...++++ +..+ .
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 766788999999999999999999999999865 45 6778999999999999999999999887 1111 2
Q ss_pred HhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 309 PGVWGALLNSCKLH----------GHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 309 ~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...+..+...+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 22344555667777 9999999999999999999999999999999999999999999999987653
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=198.44 Aligned_cols=345 Identities=12% Similarity=-0.019 Sum_probs=288.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--------
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-------- 72 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------- 72 (512)
.||+.++..+...|.+.|++++|++.|+++. +.+..+|..+..+|.+.|++++|+..|+++...+...+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 4788999999999999999999999999864 34678999999999999999999999999987642110
Q ss_pred ----------------------------------------------------------------------cchHHHHHHH
Q 043142 73 ----------------------------------------------------------------------NFTFPFALKA 82 (512)
Q Consensus 73 ----------------------------------------------------------------------~~t~~~ll~~ 82 (512)
...+......
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1111222222
Q ss_pred Hh---ccCChHHHHHHHHHHHH-----hCC--------CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH
Q 043142 83 CS---ALSAIEEGRRIHEDVIR-----NKW--------ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 83 ~~---~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
+. +.|++++|...++.+++ ..- +.+..++..+...|.+.|++++|...|+++.+.+|+..++..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 275 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHH
Confidence 22 37999999999999988 311 234567888999999999999999999999998888667888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCh
Q 043142 147 VISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHS 223 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 223 (512)
+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH
Confidence 8999999999999999999998865 45677899999999999999999999998753 3567899999999999999
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhc---cCChHHH
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGH---SGRLDEA 296 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A 296 (512)
++|+..|+++.+..+.+..++..+...+...|++++|...++.+.+...-.|+ ...+..+...|.+ .|++++|
T Consensus 355 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 99999999998877767788899999999999999999999998764322222 3489999999999 9999999
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 297 CDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 297 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
...++++ ...| +..+|..+...+...|++++|...++++++.+|.++..+..+
T Consensus 435 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 435 TNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999987 3334 466889999999999999999999999999999887666554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.4e-20 Score=179.59 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=223.3
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
+..|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4566777777788888888888888877643 2234567777777778888888888888877764 4466777788888
Q ss_pred HHhCCChHHHHHHHHhhhhCCC---Chh-HHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCchHHHHH
Q 043142 118 YAKCSCVVNARQVFDKILERDP---SEA-TLVTV------------ISASADIAALPQGRELHGFSWRHRFELNVKVKTA 181 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~p---d~~-t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 181 (512)
|.+.|++++|...|+++.+.+| +.. .+..+ ...+...|++++|...+..+.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 8888888888888888888777 433 23333 356677777888888877777654 445677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHH------------H
Q 043142 182 LVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFV------------G 246 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~------------~ 246 (512)
+...|.+.|++++|...|+.+.+ .+...|..+...|...|++++|...|++..+..+.+...+. .
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877654 24567777888888888888888888888766553333332 2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-h----hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPS-V----QHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSC 319 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 319 (512)
+...+...|++++|...++.+.+. .|+ . ..+..+...|.+.|++++|...+++. ...| +..+|..+...+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 355677788888888888887654 343 2 23445677788888888888888776 3334 556778888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
...|++++|...++++++.+|.++..+..+..++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888888888888888888877777666665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.9e-19 Score=171.99 Aligned_cols=297 Identities=8% Similarity=-0.000 Sum_probs=253.5
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC-ChhHHHHHHHHH
Q 043142 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP-SEATLVTVISAS 151 (512)
Q Consensus 73 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~ 151 (512)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+.+| +...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456777888899999999999999999886 56788999999999999999999999999999888 456788889999
Q ss_pred hccCChHHHHHHHHHHHHcCCC--CchHHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHH
Q 043142 152 ADIAALPQGRELHGFSWRHRFE--LNVKVKTAL------------VDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMI 214 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 214 (512)
...|++++|...+..+.+.... .+...+..+ ...+...|++++|...|+++.+ .+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999886420 344555544 5889999999999999998753 4567899999
Q ss_pred HHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhHHH------------
Q 043142 215 TGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-VQHYT------------ 281 (512)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------ 281 (512)
..|...|++++|+..+++.....+.+..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887778889999999999999999999999999854 453 33332
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCCCHh-----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 282 CMVDLLGHSGRLDEACDLIMQM-RVKPDPG-----VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
.+...+.+.|++++|...++++ ...|+.. .+..+...+...|++++|...++++++.+|.++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3366799999999999999987 3344432 355677889999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhCC
Q 043142 356 AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~g 373 (512)
.|++++|.+.+++..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999998654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.8e-19 Score=169.25 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=188.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
++..+..+...+...|++++|+++|+++.... +.+...+..++..+...|++++|..++..+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 45555666666666677777777776666542 1233345555566666666666666666666654 345556666666
Q ss_pred HHHhCC-ChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCS-CVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g-~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
.|...| ++++|.+.|+++.+.+|+ +...+..+...|...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT----------------------------------YGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT----------------------------------CTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc----------------------------------cHHHHHHHHHHHHHccCHHHH
Confidence 666666 666666666666655543 334455555555666666666
Q ss_pred HHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 043142 196 RNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272 (512)
Q Consensus 196 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 272 (512)
...|+++.+ .+...|..+...|...|++++|...|++.....+.+...+..+...+...|++++|...++.+.+...
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 666655432 22455555666677777777777777777666555666777777777777777777777777764321
Q ss_pred -------CCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 273 -------IDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 273 -------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
...+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|.+.++++++.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 1224567788888888888888888888776 2233 455788888888888899999999998888888888
Q ss_pred chHHHHHHHH-HhccCh
Q 043142 344 GNYVILSNIY-ARAANW 359 (512)
Q Consensus 344 ~~~~~l~~~~-~~~g~~ 359 (512)
..+..+..++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 8888888877 444543
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=7.2e-19 Score=179.39 Aligned_cols=340 Identities=11% Similarity=0.037 Sum_probs=269.8
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCC---CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCC------------
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIP---QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGL------------ 69 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------ 69 (512)
.++.++..+...|.+.|++++|++.|+++. +.+..+|..+...+...|++++|+..|+.+....-
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 467889999999999999999999999864 34778999999999999999999999964421100
Q ss_pred ------------------------CCCcch--------------------------HHHHHHHHhc------------cC
Q 043142 70 ------------------------VPDNFT--------------------------FPFALKACSA------------LS 87 (512)
Q Consensus 70 ------------------------~p~~~t--------------------------~~~ll~~~~~------------~~ 87 (512)
.|+... +..+..++.. .+
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 011000 0001111111 14
Q ss_pred ChHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDV-------FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a 160 (512)
++++|.++++.+++.. +.+. .++..+...+...|++++|...|+++.+.+|+..++..+...+...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 7888999999988764 2232 3566777888999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++....
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998875 45678899999999999999999999998753 346789999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhcc----------CChHHHHHHHHhC
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHS----------GRLDEACDLIMQM 303 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 303 (512)
+.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...+++.
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 77778889999999999999999999999875421111 122344556677777 9999999999987
Q ss_pred -CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 304 -RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 304 -~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
...| +...|..+...+...|++++|.+.|+++++..|.++...
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3344 456899999999999999999999999999999876543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-18 Score=165.47 Aligned_cols=264 Identities=13% Similarity=0.071 Sum_probs=221.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALV 183 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 183 (512)
+.+..++..+...+...|++++|.++|+++.+.+|+. ..+..++..+...|++++|...+..+.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4556666777777777788888888888777776644 345556667777788888888887777754 44677888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 184 DMYAKCG-LVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 184 ~~y~~~g-~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
..|...| ++++|...|++..+. +...|..+...|...|++++|+..|++..+..+.+...+..+...+...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 9999999 999999999987643 467899999999999999999999999998877666777789999999999999
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CC----------CCCHhHHHHHHHHHHHcCCHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV----------KPDPGVWGALLNSCKLHGHVKL 327 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~~~ 327 (512)
|...++.+.+ ..| +...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|++++
T Consensus 178 A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 178 AERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999974 355 6788999999999999999999999877 11 2335689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 328 AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 328 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987654
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.8e-20 Score=177.82 Aligned_cols=310 Identities=14% Similarity=0.140 Sum_probs=149.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
..+.|+ -+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+
T Consensus 8 a~~~ll---~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 8 AVQVLI---EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH---HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Confidence 344444 37789999999999997664 9999999999999999999999753 577799999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
+++|...+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|..+...|...|.+++|...|..+
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 99999988877764 46688899999999999999999988853 77889999999999999999999999976
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
..|..|++++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv 214 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELI 214 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHH
Confidence 37899999999999999999999999 388999999999999999999966555422 2333355788
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc--CChHHHHHHHHh-CCCCC------CHhHHHHHHHH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS--GRLDEACDLIMQ-MRVKP------DPGVWGALLNS 318 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~-m~~~p------~~~~~~~ll~~ 318 (512)
..|.+.|.+++|..+++... ++++ ....|+-|.-+|++- +++.+.++.|.. +.+.| +...|..+.-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886 5665 667777777777654 566677766643 33333 45689999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc------------CCCCCchHHHHHHHHH
Q 043142 319 CKLHGHVKLAELALEKLIEL------------EPHDAGNYVILSNIYA 354 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 354 (512)
|...++++.|....-+-... .+.+...|.-.+..|.
T Consensus 292 y~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 292 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999887654332211 3556666666666665
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.3e-19 Score=171.85 Aligned_cols=300 Identities=12% Similarity=0.016 Sum_probs=206.4
Q ss_pred HHhcCCchHHHH-HHHHHHHCCC-CC--CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 043142 48 YAWNGPYEVAIE-LYYRLLEIGL-VP--DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC 123 (512)
Q Consensus 48 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (512)
+...|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334567777777 7765543211 11 23456667777777788888888887777764 4566677777777777888
Q ss_pred hHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 124 VVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
+++|...|+++.+.+|+ ..++..+...+...|++++|...+..+.+.... +...+..+. .....
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~------- 178 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE-------EGAGG------- 178 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH-------HHhhh-------
Confidence 88888877777766653 345555566666666666666666666554321 111111000 00000
Q ss_pred CCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhH
Q 043142 203 REKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQH 279 (512)
Q Consensus 203 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 279 (512)
... ...+..+...+ ..|++++|+..|+++....+. +..++..+...+...|++++|...|+.+.+. .| +...
T Consensus 179 ~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~ 253 (368)
T 1fch_A 179 AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLL 253 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHH
Confidence 000 01111223333 889999999999999887763 7889999999999999999999999999754 45 6788
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CchH
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD-----------AGNY 346 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~ 346 (512)
+..+...|.+.|++++|+..++++ ...| +...|..+...+...|++++|...++++++..|.+ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999887 3344 46689999999999999999999999999988776 7899
Q ss_pred HHHHHHHHhccChhHHHHHHHH
Q 043142 347 VILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
..++.+|...|++++|..++++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999998763
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.2e-17 Score=165.63 Aligned_cols=363 Identities=10% Similarity=0.017 Sum_probs=250.1
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC------------CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHC-----C-
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP------------QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-----G- 68 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 68 (512)
...||.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4578999999999999999999987642 124678999999999999999999999887542 1
Q ss_pred CCCC-cchHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhCCChHHHHHHHHhhhhCCCCh-
Q 043142 69 LVPD-NFTFPFALKACSA--LSAIEEGRRIHEDVIRNKWETDVFVGAALIDM---YAKCSCVVNARQVFDKILERDPSE- 141 (512)
Q Consensus 69 ~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~pd~- 141 (512)
..++ ..++.....++.. .+++++|.+.|++.++.. |.++..+..+... +...++.++|++.|++..+.+|+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1122 2345555444444 457899999999999885 4456666666555 445688889999999998888754
Q ss_pred hHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CchHHHHHH
Q 043142 142 ATLVTVISASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K-RVVSWNAMI 214 (512)
Q Consensus 142 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li 214 (512)
.++..+...+.. .++.++|.+.++...+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 445555444443 467889999999888765 55677888999999999999999999998763 3 345666666
Q ss_pred HHHHHc-------------------CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 043142 215 TGYAMH-------------------GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP 275 (512)
Q Consensus 215 ~~~~~~-------------------g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 275 (512)
..|... +..++|...|++.....+.+..++..+...+...|++++|...|++..+. .|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~ 365 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---EL 365 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CC
Confidence 555332 33567888888888777766777888999999999999999999998743 34
Q ss_pred Chh----HHHHHHH-HHhccCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 276 SVQ----HYTCMVD-LLGHSGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 276 ~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
+.. .+..+.. .+.+.|+.++|+..+++. .+.|+...+... .+.+.+++++.++.+|.++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 322 2233332 235678999999999876 566765443322 3456677888889999999999999
Q ss_pred HHHHHhccChhHHHHHHHHHHhCCCccCCceeeE
Q 043142 350 SNIYARAANWEGVAKLRKLMIDRGIKKSIACSWI 383 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 383 (512)
..+|...|++++|.+.|++..+.+.......+|+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999988765543444564
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=7.9e-18 Score=162.89 Aligned_cols=296 Identities=13% Similarity=0.041 Sum_probs=181.7
Q ss_pred HHccCChHHHHH-HHccCCC-----C--CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 043142 17 YSACDCLHNAHQ-LFDRIPQ-----R--NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA 88 (512)
Q Consensus 17 y~~~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 88 (512)
|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888988 8876432 1 45678899999999999999999999999864 2355688888999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSW 168 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 168 (512)
+++|.+.++.+++.. +.+..++..+...|.+.|++++|.+.|+++...+|+........... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------~~--------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH------hh---------
Confidence 999999999999886 56888999999999999999999999999999887654322110000 00
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHH
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE--K---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHIT 243 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t 243 (512)
...+ ...+..+...+ +.|++++|...|+++.+ | +...|..+...|...|++++|+..|+++....+.+..+
T Consensus 178 --~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 178 --GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 0000 00111112222 45555555555555431 1 23455555555666666666666666655554444555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC------------CH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP------------DP 309 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~ 309 (512)
+..+...+...|++++|...|+.+.+. .| +...+..+...|.+.|++++|...++++ ...| ..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 566666666666666666666665533 23 4455566666666666666666666554 1111 13
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
.+|..+..++...|+.++|..++++.+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 466666666666666666666655443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.6e-18 Score=167.88 Aligned_cols=269 Identities=12% Similarity=-0.027 Sum_probs=186.5
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHH
Q 043142 73 NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISAS 151 (512)
Q Consensus 73 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~ 151 (512)
...+..+...+.+.|++++|.+.++.+++.. +.+..++..+...|.+.|++++|+..|+++.+.+|+ ..++..+...+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777777777888888888888877765 456777777888888888888888888877776654 33455555555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 043142 152 ADIAALPQGRELHGFSWRHRFELN-VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
...|++++|...+..+.+.. |+ ...+..+. .....+..+...|...|++++|+..|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 55555555555555554432 11 00000000 01223344567777888888888888
Q ss_pred HHhHHCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 043142 231 EKMKDEVQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK 306 (512)
Q Consensus 231 ~~m~~~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 306 (512)
+++....+. +..++..+...+...|++++|...|+.+.+. .| +..++..+...|.+.|++++|+..++++ ...
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 888777663 7888888888888888888888888888754 34 6778888888888899999998888877 334
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhccChhHHHHHHHH
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPH------------DAGNYVILSNIYARAANWEGVAKLRKL 368 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (512)
|+ ..+|..+...+...|++++|...++++++..|. +...|..+..++...|+.+.+.++.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 54 568888999999999999999999999987765 367888999999999999988877654
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.9e-15 Score=152.36 Aligned_cols=351 Identities=14% Similarity=0.006 Sum_probs=293.9
Q ss_pred chhHHHHHHHHHHc----cCChHHHHHHHccCCC-CCchHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcchH
Q 043142 6 HPVLATKLVHLYSA----CDCLHNAHQLFDRIPQ-RNLFLWNVLIRAYAW----NGPYEVAIELYYRLLEIGLVPDNFTF 76 (512)
Q Consensus 6 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 76 (512)
|+.....|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888887 8999999999987644 477889999999998 899999999999998865 55667
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 77 PFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 77 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
..+...+.. .+++++|.+.|+...+.| +...+..|..+|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 777777777 789999999999998876 56778888889987 789999999999998874 677788888
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Q 043142 149 SASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM 219 (512)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 219 (512)
..+.. .++.++|...+....+.| +...+..|..+|.. .+++++|...|++..+. +..++..+...|..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 88876 899999999999999876 56678888888886 89999999999987654 46777778888887
Q ss_pred ----cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 043142 220 ----HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG-----GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHS 290 (512)
Q Consensus 220 ----~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 290 (512)
.++.++|+..|++..+.+. ...+..+...+... +++++|...|+...+. + +...+..|..+|.+.
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQGN--SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 8999999999999887654 44556677777766 8999999999999753 2 456777888888776
Q ss_pred C---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----ccCh
Q 043142 291 G---RLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVILSNIYAR----AANW 359 (512)
Q Consensus 291 g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 359 (512)
| +.++|+++|++.-...+...+..|...|.. .+++++|...|+++.+.+ ++.++..|..+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 6 789999999888333577788899999988 899999999999999875 46788899999998 8999
Q ss_pred hHHHHHHHHHHhCCC
Q 043142 360 EGVAKLRKLMIDRGI 374 (512)
Q Consensus 360 ~~a~~~~~~m~~~g~ 374 (512)
++|...|++..+.+.
T Consensus 420 ~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999988774
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2e-17 Score=159.99 Aligned_cols=262 Identities=12% Similarity=0.046 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|.+.++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56679999999999999999999999998854 2356689999999999999999999999999886 567889999999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhH-HH----------HHHHHHhccCChHHHHHHHHHHHHcCCC-CchHHHHHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEAT-LV----------TVISASADIAALPQGRELHGFSWRHRFE-LNVKVKTALVD 184 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t-~~----------~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~ 184 (512)
.|.+.|++++|...|+++.+.+|+... +. .+...+...|++++|...++.+.+.... .+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------- 214 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD------- 214 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH-------
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH-------
Confidence 999999999999999999887764322 11 2234444455555555555555443211 0334
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 043142 185 MYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFF 264 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 264 (512)
+|..+...|...|++++|+..|++..+..+.+..++..+..++...|++++|...|
T Consensus 215 ------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 215 ------------------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp ------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444555555555555555555554444444445555555555555555555555
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHHcCCHHHHH
Q 043142 265 ESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-------------DPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 265 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
+.+.+. .| +...+..+..+|.+.|++++|...|+++ ...| +...|..+..++...|+.+.+.
T Consensus 271 ~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 271 TRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 555432 23 3445555555555555555555555544 0011 2346666666666666666666
Q ss_pred HHHHH
Q 043142 330 LALEK 334 (512)
Q Consensus 330 ~~~~~ 334 (512)
.+.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55544
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.6e-17 Score=157.42 Aligned_cols=332 Identities=11% Similarity=0.035 Sum_probs=176.9
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 043142 5 FHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACS 84 (512)
Q Consensus 5 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 84 (512)
+++.+|+.|..++.+.|++++|++.|.+. +|...|..++.++...|++++|...++..++. .++..+.+.++.++.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 45569999999999999999999999764 57779999999999999999999977766663 456788999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELH 164 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 164 (512)
+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|..+..++.+.|++++|.+.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHH
Confidence 9999999998874 477789999999999999999999999987 36999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHH
Q 043142 165 GFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITF 244 (512)
Q Consensus 165 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 244 (512)
..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+++.......-....|
T Consensus 172 ~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 172 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp HHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred HHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 988 378999999999999999999988777655 4444455688999999999999999999876655555566
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHH
Q 043142 245 VGVLSACSR--GGLFDEGRMFFESMVRDYHIDP------SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALL 316 (512)
Q Consensus 245 ~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 316 (512)
+.+.-++++ .+++.+..+.|.. +-+++| +...|.-++-.|...++++.|...+-+-+ |+..--..+.
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~ 319 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFK 319 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHH
Confidence 666555554 4455555555543 335555 57789999999999999999988765542 3434444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
....+-.+.+.-.+...-.++..| ...+.|+.++...=+...+.++|++.
T Consensus 320 ~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 320 DIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 555666666655555555555444 45666777776666666666666544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=9.2e-17 Score=152.44 Aligned_cols=264 Identities=11% Similarity=-0.028 Sum_probs=164.2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+...|++++|+.+|+++.+... .+..++..+..++...|++++|.+.++.+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 455677888889999999999999999887532 245677788888899999999999999998875 557788888999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhHHHHHH--------------HH--HhccCChHHHHHHHHHHHHcCCCCchHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEATLVTVI--------------SA--SADIAALPQGRELHGFSWRHRFELNVKVKT 180 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll--------------~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 180 (512)
.|.+.|++++|.+.|+++.+.+|+.......+ .. +...|++++|...+..+.+.. +.+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---- 172 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA---- 172 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH----
Confidence 99999999999999999988877654322222 11 334444444444444444432 2233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a 260 (512)
..|..+...|...|++++|+..++++.+..+.+..++..+...+...|++++|
T Consensus 173 ---------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 173 ---------------------------QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 44444555555555555555555555544444445555555555555555555
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHHcCCH
Q 043142 261 RMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-------------PGVWGALLNSCKLHGHV 325 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~ 325 (512)
...++.+.+. .| +...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|++
T Consensus 226 ~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 226 LDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 5555555432 22 3445555555555555555555555544 11222 34555666666666666
Q ss_pred HHHHHHHHHHHh
Q 043142 326 KLAELALEKLIE 337 (512)
Q Consensus 326 ~~A~~~~~~~~~ 337 (512)
++|..++++.++
T Consensus 303 ~~A~~~~~~~l~ 314 (327)
T 3cv0_A 303 DLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCCSH
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=6.7e-17 Score=150.84 Aligned_cols=272 Identities=10% Similarity=0.025 Sum_probs=197.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHH
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWETDV--FVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a 160 (512)
....|++..|....+..... .|+. ...-.+..+|...|+++.|+..++.. ..|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHH
Confidence 33456666666665544322 2322 23344566777777777777666542 234445666666777777777777
Q ss_pred HHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCC
Q 043142 161 RELHGFSWRHRF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQP 239 (512)
Q Consensus 161 ~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 239 (512)
.+.++.++..+. +.+...+..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+..+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 777777777654 44566777788999999999999999998 456788899999999999999999999999877542
Q ss_pred CHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHH
Q 043142 240 DHITF--VGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGAL 315 (512)
Q Consensus 240 ~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 315 (512)
+..+. ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..+++. ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22111 22334445668999999999999865 2347888999999999999999999999987 4445 45689999
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 316 LNSCKLHGHVKL-AELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 316 l~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
+..+...|+.++ +.++++++++.+|+++. +.+...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 999999999875 67899999999999874 345556666666655433
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.4e-15 Score=154.95 Aligned_cols=399 Identities=9% Similarity=0.039 Sum_probs=275.4
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC--C-CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ--R-NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFAL 80 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 80 (512)
+-|..+|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++++.. .|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 346778999998 4789999999999999754 3 6678999999999999999999999999875 46766666666
Q ss_pred HHH-hccCChHHHHH----HHHHHHHh-CCC-CChhHHHHHHHHHHh---------CCChHHHHHHHHhhhhCCCCh---
Q 043142 81 KAC-SALSAIEEGRR----IHEDVIRN-KWE-TDVFVGAALIDMYAK---------CSCVVNARQVFDKILERDPSE--- 141 (512)
Q Consensus 81 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~pd~--- 141 (512)
... ...|+.+.|.+ +|+..++. |.. ++..+|...+....+ .|+++.|.++|++..+ .|+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 432 34566666554 77776654 543 356788888887665 6899999999999988 4543
Q ss_pred hHHHHHHHH---H----------hccCChHHHHHHHHHHH------HcC---CCCc--------hHHHHHHHHHHHhc--
Q 043142 142 ATLVTVISA---S----------ADIAALPQGRELHGFSW------RHR---FELN--------VKVKTALVDMYAKC-- 189 (512)
Q Consensus 142 ~t~~~ll~~---~----------~~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~y~~~-- 189 (512)
..|...... . ...+++..|..++.... +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 223222111 1 12345666776666532 211 2333 24666655443322
Q ss_pred --CCH----HHHHHHHHhcCC---CCchHHHHHHHHHHH-------cCChH-------HHHHHHHHhHHC-CCCCHHHHH
Q 043142 190 --GLV----KVARNLFEQLRE---KRVVSWNAMITGYAM-------HGHST-------KALDLFEKMKDE-VQPDHITFV 245 (512)
Q Consensus 190 --g~~----~~A~~~~~~m~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~-~~p~~~t~~ 245 (512)
++. +.|..+|++... .+...|...+..+.+ .|+.+ +|..+|++.... .+.+...+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 367778877653 346778888877775 68876 899999998863 334577788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-h-hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHH-HHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPS-V-QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLN-SCK 320 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~-~~~ 320 (512)
.++..+.+.|++++|..+|+.+++ +.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|..... .+.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 888888889999999999999874 3564 2 57888888888999999999999887 33333 222322222 234
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC-ccC-CceeeEEECCEEEEEEeCCCC
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI-KKS-IACSWIEVKNKAHAFLSGDAS 398 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~ 398 (512)
..|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..+|++....+. .|. ....|... ..|....+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~----~~~e~~~G~ 478 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF----LAFESNIGD 478 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH----HHHHHHSSC
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH----HHHHHHcCC
Confidence 689999999999999999999888999999999999999999999999887643 222 11134110 012222334
Q ss_pred CCChHHHHHHHHHHH
Q 043142 399 HPNCDEIYAKLKWLE 413 (512)
Q Consensus 399 ~~~~~~~~~~l~~l~ 413 (512)
......+.....+.+
T Consensus 479 ~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 479 LASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 455666666655555
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.9e-17 Score=155.01 Aligned_cols=273 Identities=11% Similarity=-0.034 Sum_probs=192.6
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHh
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASA 152 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~ 152 (512)
..+......+...|++++|.++++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+.+|+ ..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345555666666777777777777776654 345566666667777777777777777776665543 234444444444
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH-HH-HHHHcCChHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAM-IT-GYAMHGHSTKALDLF 230 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~ 230 (512)
..|++++|...+..+.+.... +...+..+.... ++......+ .. .+...|++++|...+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 555555555555444443211 111111110000 000000111 22 367788899999999
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP- 307 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 307 (512)
+++....+.+...+..+...+...|++++|..+++.+.+. .| +...+..+...|.+.|++++|...++++ ...|
T Consensus 162 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9998887778889999999999999999999999999754 45 6788999999999999999999999987 3334
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH------------DAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
+..+|..+...+...|++++|.+.++++++..|. ++..+..+..+|.+.|++++|..++++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4668999999999999999999999999999988 6789999999999999999999998754
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.5e-15 Score=149.61 Aligned_cols=333 Identities=11% Similarity=-0.039 Sum_probs=275.4
Q ss_pred chhHHHHHHHHHHc----cCChHHHHHHHccCCC-CCchHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcchH
Q 043142 6 HPVLATKLVHLYSA----CDCLHNAHQLFDRIPQ-RNLFLWNVLIRAYAW----NGPYEVAIELYYRLLEIGLVPDNFTF 76 (512)
Q Consensus 6 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 76 (512)
++..+..|..+|.. .++.++|.+.|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677888889988 8999999999998654 477888889999988 789999999999998875 45667
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHH
Q 043142 77 PFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVI 148 (512)
Q Consensus 77 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll 148 (512)
..+...+.. .++.++|.+.|++..+.| +...+..|..+|.. .++.++|.+.|++..+.+ +..++..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 777777776 789999999999999875 67888889999998 899999999999998775 566777777
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Q 043142 149 SASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM 219 (512)
Q Consensus 149 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 219 (512)
..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+. +..++..+...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 77765 789999999999998875 45677788888888 89999999999998754 46778888888888
Q ss_pred c-----CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc--
Q 043142 220 H-----GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG---LFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH-- 289 (512)
Q Consensus 220 ~-----g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 289 (512)
. ++.++|+..|++..+.+.+ ..+..+...+...| +.++|...|++..+. .+...+..|..+|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCC
Confidence 7 8999999999999887643 45566666676656 789999999999753 367788889999988
Q ss_pred --cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 043142 290 --SGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPH---DAGNYVILSNIYA 354 (512)
Q Consensus 290 --~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 354 (512)
.+++++|..+|++.-...+...+..|...|.. .++.++|...|+++.+.+|+ ++.....|..++.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 89999999999988323467788889998988 89999999999999999854 5556555555544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.3e-16 Score=144.72 Aligned_cols=247 Identities=10% Similarity=0.012 Sum_probs=205.9
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh--hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE--ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVK 193 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 193 (512)
.-....|++..|+..+++....+|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556899999999999988877765 3556678899999999999876643 24667888899999999999999
Q ss_pred HHHHHHHhcCC----C-CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 194 VARNLFEQLRE----K-RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 194 ~A~~~~~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+|.+.|+++.. | +...+..+...|.+.|++++|++.+++ +.+...+..++..+.+.|++++|...|+.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998642 4 356677788999999999999999987 4677788899999999999999999999998
Q ss_pred HhcCCCCChhH---HHHHHHHHhccCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 269 RDYHIDPSVQH---YTCMVDLLGHSGRLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 269 ~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+..++++++.+|.++
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 65 465432 233445566679999999999998 2334667999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccChhH-HHHHHHHHHhCCC
Q 043142 344 GNYVILSNIYARAANWEG-VAKLRKLMIDRGI 374 (512)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g~ 374 (512)
.++..++..+...|+.++ +.++++++.+...
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999976 5789988876543
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=7.1e-18 Score=173.71 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccCC-------CCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRIP-------QRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFA 79 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 79 (512)
..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC---CCChhHHHHHHHHHhccC
Q 043142 80 LKACSALSAI-EEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER---DPSEATLVTVISASADIA 155 (512)
Q Consensus 80 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~pd~~t~~~ll~~~~~~~ 155 (512)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.-. .|...|...|...+++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998766644333333332222111 012334445555565544
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=169.29 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=110.4
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCHHH
Q 043142 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLR-------EKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDHIT 243 (512)
Q Consensus 172 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t 243 (512)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+ ||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 57999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 043142 244 FVGVLSACSRGGLF-DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDL 299 (512)
Q Consensus 244 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 299 (512)
|++||.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999999984 7899999999765 9999999999999877776544444443
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=6.4e-14 Score=142.60 Aligned_cols=331 Identities=12% Similarity=0.104 Sum_probs=244.7
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAAL 114 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (512)
.|..+|..++. +.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 37889999998 58899999999999999875 354 4578889999999999999999999999874 577788877
Q ss_pred HHH-HHhCCChHHHHH----HHHhhhhC---CC-ChhHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCch
Q 043142 115 IDM-YAKCSCVVNARQ----VFDKILER---DP-SEATLVTVISASAD---------IAALPQGRELHGFSWRHRFELNV 176 (512)
Q Consensus 115 i~~-~~~~g~~~~A~~----~~~~m~~~---~p-d~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~ 176 (512)
+.. ....|+.++|.+ +|++.... +| +...|...+..... .|+++.|..+|+.+++.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345688777765 77766542 33 34456666655443 68899999999999883212222
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHh------cCC-------CC--------chHHHHHHHHHHHc--
Q 043142 177 KVKTALVDMY-------------AKCGLVKVARNLFEQ------LRE-------KR--------VVSWNAMITGYAMH-- 220 (512)
Q Consensus 177 ~~~~~li~~y-------------~~~g~~~~A~~~~~~------m~~-------~~--------~~~~~~li~~~~~~-- 220 (512)
.+|....... .+.++++.|..++.. ..+ ++ ...|...+.-...+
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3444332211 134567778777765 111 11 24566655433332
Q ss_pred --CCh----HHHHHHHHHhHHCCCCCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHHhcCCCC-ChhH
Q 043142 221 --GHS----TKALDLFEKMKDEVQPDHITFVGVLSACSR-------GGLFD-------EGRMFFESMVRDYHIDP-SVQH 279 (512)
Q Consensus 221 --g~~----~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~~~~~~~~~p-~~~~ 279 (512)
++. .+|..+|++.....+.+...|...+..+.+ .|+++ +|..+|++.++ .+.| +...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--HhCcccHHH
Confidence 222 478889999988766677888888877765 79987 89999999873 2456 6889
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHh
Q 043142 280 YTCMVDLLGHSGRLDEACDLIMQM-RVKPDP--GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI-YAR 355 (512)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~ 355 (512)
|..++..+.+.|++++|..+|+++ ...|+. ..|..++..+.+.|++++|..+|+++++..|.+...|...+.. +..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 999999999999999999999987 455643 4899999999999999999999999999988776666655544 346
Q ss_pred ccChhHHHHHHHHHHhCC
Q 043142 356 AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~g 373 (512)
.|++++|..+|++..+..
T Consensus 404 ~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHC
Confidence 899999999999887653
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=5.8e-15 Score=131.48 Aligned_cols=195 Identities=15% Similarity=0.054 Sum_probs=159.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH
Q 043142 173 ELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS 249 (512)
Q Consensus 173 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 249 (512)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+..+.+...+..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 566778888899999999999999999987653 46788889999999999999999999999887777888889999
Q ss_pred HHhcC-----------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHHHH
Q 043142 250 ACSRG-----------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGALL 316 (512)
Q Consensus 250 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 316 (512)
++... |++++|...|++.++. .| +...+..+...|...|++++|+..|++. ....+...|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999 9999999999999854 66 6788899999999999999999999887 2226778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..+...|++++|...++++++.+|.++..+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988654
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=2.4e-14 Score=132.03 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=136.5
Q ss_pred HHHHHhCCChHHHHHHHHhhhhCCCChh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCC
Q 043142 115 IDMYAKCSCVVNARQVFDKILERDPSEA-TLVTVISASADIAALPQGRELHGFSWRHRFEL--NVKVKTALVDMYAKCGL 191 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~ 191 (512)
...+.+.|++++|+..|+++.+.+|+.. .+..+...+...|++++|...+..+++....+ ....+..+...|.+.|+
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 3344444444444444444444444322 34444444444444444444444444421111 12235556666666666
Q ss_pred HHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|.+.|++..+ .+...|..+...|...|++++|+..|++..+..+.+...+..+...+...+++++|...|+.+.
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665432 2345666666666667777777777766665544555555555523333347777777777776
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCC---hHHHHHHHHhC----CCCCC------HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 269 RDYHIDP-SVQHYTCMVDLLGHSGR---LDEACDLIMQM----RVKPD------PGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
+. .| +...+..+...+...|+ +++|...+++. ...|+ ..+|..+...+...|++++|...+++
T Consensus 170 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 170 EL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 34 35566666666666666 66666666554 11233 24677788889999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHh
Q 043142 335 LIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 335 ~~~~~p~~~~~~~~l~~~~~~ 355 (512)
+++.+|.++.++..+......
T Consensus 247 al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 247 ILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHCTTCHHHHHHHC-----
T ss_pred HHhcCccHHHHHHHhhhhhcc
Confidence 999999998777666554443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.3e-15 Score=133.75 Aligned_cols=228 Identities=9% Similarity=-0.042 Sum_probs=121.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhcc
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~ 154 (512)
.+..+...+...|++++|.+.+..+++.. .+..++..+...|...|++++|.+.|++..+.+|+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------------ 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------------
Confidence 44555555666666666666666666555 4555666666666666666666666665544332110
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
...+....++..+...|.+.|++++|...|++..+.+.. ...+...|++++|...++++.
T Consensus 73 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 73 ---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHH
Confidence 000000234444555555555555555555544321111 123444555566666666655
Q ss_pred HCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhH
Q 043142 235 DEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGV 311 (512)
Q Consensus 235 ~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 311 (512)
...+.+...+..+...+...|++++|...++.+.+. .| +...+..+...|.+.|++++|...+++. ...| +...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH
Confidence 544444455555666666666666666666666533 22 4455555556666666666666665554 2223 2445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
|..+...+...|++++|...++++++..
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6666666666666666666666666655
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=1.9e-13 Score=145.55 Aligned_cols=315 Identities=13% Similarity=0.103 Sum_probs=211.9
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
..+...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 334555666777777777777764 22222233322 5566777777766441 3456777777777777777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+|.+.|.+. .|...|..++..+.+.|++++|.+.|....+..+++...+.++.+|++.+++++..... +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 777777442 45666677777777777777777777776666555544445777777777766433332 1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH
Q 043142 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA 250 (512)
Q Consensus 171 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a 250 (512)
.++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 1259 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHH
Confidence 234455556777777788888888888775 47777888888888888888887766 356777777778
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHc--CCHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP-GVWGALLNSCKLH--GHVK 326 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~--g~~~ 326 (512)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|.. ..|.-|...+.+. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 88888877777755432 334566778888999999999999999766 444433 3666666666553 4555
Q ss_pred HHHHHHHHHHhcCC-----CCCchHHHHHHHHHhccChhHHHH
Q 043142 327 LAELALEKLIELEP-----HDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 327 ~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
++.+.|..-....| .+...|.-++..|.+.|+|+.|..
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666665555444 466788889999999999998884
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.9e-14 Score=128.58 Aligned_cols=221 Identities=10% Similarity=-0.027 Sum_probs=150.3
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CC----hhHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWE--TD----VFVG 111 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~ 111 (512)
...|..+...+...|++++|+..|+++.+.. ++...+..+..++...|++++|.+.+..+++.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888888999999999999999998876 67788888889999999999999999988876411 12 5788
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 191 (512)
..+...|.+.|++++|...|+++...+|+.. .+...|++++|...+..+.+.. +.+..++..+...|...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999988777632 2344455666666666665542 2234455555556666666
Q ss_pred HHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 192 VKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 192 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
+++|...|++..+ .+...|..+...|...|++++|+..|++..+..+.+..++..+..++...|++++|...++...
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666655432 2344555555555555566666665555555444445555555555555555555555555554
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=9.2e-13 Score=140.31 Aligned_cols=316 Identities=13% Similarity=0.126 Sum_probs=248.4
Q ss_pred ccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHED 98 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 98 (512)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+..
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6677888888877664 4678999999999999999999999764 3667789999999999999999999998
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHH
Q 043142 99 VIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKV 178 (512)
Q Consensus 99 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 178 (512)
..+.. +++.+.+.++.+|++.+++++..... .+|+...|..+...|...|++++|...|..+ ..
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~n 1223 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 1223 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hH
Confidence 87764 55555667999999999998644442 3467778888999999999999999999985 37
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+. .+...+..++..|.+.|.++
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999987 567899999999999999999888765421 56667778999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhc--cCChHHHHHHHHhC-CCCC------CHhHHHHHHHHHHHcCCHHHH
Q 043142 259 EGRMFFESMVRDYHIDP-SVQHYTCMVDLLGH--SGRLDEACDLIMQM-RVKP------DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~A 328 (512)
+|+.+++... ++.| ....|+-|..+|++ .+++.++.++|..- .+.| +...|.-+.-.|.+.|+++.|
T Consensus 1298 EAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1298 ELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999998876 5565 55566666666665 45666777766543 3322 455799999999999999999
Q ss_pred HHHHHHHHh------------cCCCCCchHHHHHHHHHhcc---------------ChhHHHHHHH
Q 043142 329 ELALEKLIE------------LEPHDAGNYVILSNIYARAA---------------NWEGVAKLRK 367 (512)
Q Consensus 329 ~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 367 (512)
....-+-.. ..+.++..|.-.+..|.... +.+.+.++|.
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 833222211 13567777777777777666 6666666665
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=5.7e-14 Score=135.54 Aligned_cols=244 Identities=9% Similarity=0.014 Sum_probs=189.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAA-LPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
..+|+.+...+.+.|++++|+..|+++.+.+|+. ..|..+..++...|+ +++|...++.+++.. +.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3456667777777788888888888877777754 456677777777775 888888887777764 3467788888888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc-CCCHHHH-
Q 043142 186 YAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR-GGLFDEG- 260 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~-~g~~~~a- 260 (512)
|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++.+..+-+...|..+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8888888888888888763 3567888888889999999999999999988877788888888888888 5665777
Q ss_pred ----HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC--ChHHHHHHHHhCCCCCC-HhHHHHHHHHHHHcC---------
Q 043142 261 ----RMFFESMVRDYHIDP-SVQHYTCMVDLLGHSG--RLDEACDLIMQMRVKPD-PGVWGALLNSCKLHG--------- 323 (512)
Q Consensus 261 ----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g--------- 323 (512)
+..|++.++. .| +...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 256 ~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4778887743 66 6778888888888888 68899998888754554 457788888887764
Q ss_pred CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 043142 324 HVKLAELALEKL-IELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 324 ~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 355 (512)
..++|+++++++ .+.+|.....|..+...+..
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999888888877766643
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.2e-14 Score=130.51 Aligned_cols=215 Identities=10% Similarity=-0.043 Sum_probs=136.9
Q ss_pred HccCChHHHHHHHccCCCC-------CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 18 SACDCLHNAHQLFDRIPQR-------NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 18 ~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
...|++++|++.|+++.+. +..+|..+...+...|++++|+..|+++.... +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456777777777765431 35567777777777888888888888777643 124556777777777778888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRH 170 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (512)
+|.+.++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+.+|+.......+..+...|++++|...+......
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887777764 445677777777777788888888888777777776655555555555566777777777666554
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------chHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 171 RFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR-------VVSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 171 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
. +++...+. ++..+...++.++|...++...+.+ ...|..+...|...|++++|...|++....
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 3 22333332 5555556666666666666655432 234455555555555555555555555443
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.7e-12 Score=129.80 Aligned_cols=303 Identities=13% Similarity=0.035 Sum_probs=219.7
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-----C--CCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhC-----
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-----G--LVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNK----- 103 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 103 (512)
.+..||.|...+...|++++|++.|++..+. + ..|+ ..+|..+..++...|++++|...++++++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987542 1 1233 3578899999999999999999999877531
Q ss_pred -C-CCChhHHHHHHHHHHhC--CChHHHHHHHHhhhhCCCChhH-HHHHHHH---HhccCChHHHHHHHHHHHHcCCCCc
Q 043142 104 -W-ETDVFVGAALIDMYAKC--SCVVNARQVFDKILERDPSEAT-LVTVISA---SADIAALPQGRELHGFSWRHRFELN 175 (512)
Q Consensus 104 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~pd~~t-~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~ 175 (512)
. .....+++.+..++.+. +++++|+..|++..+.+|+... +..+..+ +...++.++|.+.+...++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 12345666666666554 5699999999999999987543 3333333 345678888999999888765 345
Q ss_pred hHHHHHHHHHHHh----cCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHH
Q 043142 176 VKVKTALVDMYAK----CGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVL 248 (512)
Q Consensus 176 ~~~~~~li~~y~~----~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 248 (512)
..++..+...+.+ .|++++|.+.|++... .+...|..+...|...|++++|+..|++..+..+.+..++..+.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5566655555544 4678899999987653 34678899999999999999999999999887776677777666
Q ss_pred HHHhcC-------------------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 249 SACSRG-------------------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 249 ~a~~~~-------------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
.++... +..++|...++...+. .| +...+..+...|.+.|++++|++.|++. ...|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA---NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH---CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc---CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 655322 2356777778777643 44 5667888889999999999999999876 3445
Q ss_pred CHhH----HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 308 DPGV----WGALLN-SCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 308 ~~~~----~~~ll~-~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
+... +..+.. .....|+.++|+..+++++++.|.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4432 222222 23467889999999999999988763
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1e-13 Score=123.33 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE-ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
+...+..+...+.+.|++++|...|++..+.+|+. ..+..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 33444444444444444444444444444444422 233334444444444444444444444432 2233444444445
Q ss_pred HHhc-----------CCHHHHHHHHHhcCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 186 YAKC-----------GLVKVARNLFEQLRE--K-RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 186 y~~~-----------g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
|.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 5444 566666666655432 2 24455555566666666666666666665555 5555566666666
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666533 34 4455556666666666666666655543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5e-13 Score=123.07 Aligned_cols=233 Identities=12% Similarity=0.029 Sum_probs=140.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD--VFVGAALIDMY 118 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~ 118 (512)
+......+...|++++|+..|++..+... .+...+..+...+...|++++|.+.+..+++.+..++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455556666666666666666665421 1233555555666666666666666666665321111 12255566666
Q ss_pred HhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 043142 119 AKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNL 198 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 198 (512)
.+.|++++|.+.|++..+.+| .+..++..+...|.+.|++++|...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT----------------------------------TRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST----------------------------------TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc----------------------------------ccHHHHHHHHHHHHHccCHHHHHHH
Confidence 666666666666666555443 2345666677777777777777777
Q ss_pred HHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhcC
Q 043142 199 FEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL---FDEGRMFFESMVRDYH 272 (512)
Q Consensus 199 ~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~ 272 (512)
|++..+. +...|..+...+...+++++|+..|++..+..+.+...+..+..++...|+ +++|...++.+.+...
T Consensus 131 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 131 MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 7776543 245565565233334577777777777776655556666666666666666 6667777777665432
Q ss_pred CCCCh------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 043142 273 IDPSV------QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD 308 (512)
Q Consensus 273 ~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 308 (512)
-.|+. ..|..+...|.+.|++++|.+.+++. ...|+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 23432 46666777777778888887777766 33443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=2.2e-13 Score=125.66 Aligned_cols=242 Identities=10% Similarity=-0.058 Sum_probs=160.8
Q ss_pred hccCChHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKW---ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQG 160 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a 160 (512)
...+++++|.+.++.+++... +.+..++..+...|...|++++|...|+++.+.+|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------------------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--------------------
Confidence 345667777777777776531 123556666677777777777777777776665543
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV 237 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 237 (512)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+..
T Consensus 76 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 76 --------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344555566666666666666666665542 245667777777777888888888888777654
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-----HhH
Q 043142 238 QPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-----PGV 311 (512)
Q Consensus 238 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~ 311 (512)
+.+. .....+..+...|++++|...++...... .++...+ .++..+...++.++|...+++. ...|+ ..+
T Consensus 142 ~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 142 PNDP-FRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp TTCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 4332 23333344456688888888887776542 2333333 4667777778888888888776 22232 468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
|..+...+...|++++|...++++++.+|.+...+ ..++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 88899999999999999999999999998775443 55677888888887765
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=2.5e-13 Score=123.63 Aligned_cols=194 Identities=9% Similarity=-0.020 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+..+.+...+..+...+...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 344444455555555555555544331 22344555555555555555555555555554444445555555555555
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666655555543 12233 3445555555555566666666555554 1122 344555556666666666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 332 LEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 332 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
++++.+..|.++..+..+...|...|++++|.++++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666665555666666666666666666666665543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=3.9e-13 Score=119.73 Aligned_cols=198 Identities=14% Similarity=0.049 Sum_probs=152.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
+..++..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|.+.|++.....+.+..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 455667777778888888888888877543 34567777888888888888888888888776666677788888888
Q ss_pred hcC-CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHH
Q 043142 252 SRG-GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKL 327 (512)
Q Consensus 252 ~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 327 (512)
... |++++|..+++.+.+ .+..| +...+..+...+.+.|++++|+..++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 888888888888865 22344 3567777888888888888888888776 2233 45678888888888888888
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 328 AELALEKLIELEP-HDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 328 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
|...++++++..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888888888 777788888888888888888888888876543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.3e-12 Score=118.76 Aligned_cols=202 Identities=14% Similarity=0.005 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
...+..+...|...|++++|.+.|+++.+.+|+ +..++..+...|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~la~~~~ 82 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------------------------------SADAHAALAVVFQ 82 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------------------------------hHHHHHHHHHHHH
Confidence 455666666777777777777777776655442 3344455555555
Q ss_pred hcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHH
Q 043142 188 KCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~ 262 (512)
+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+. .+...+..+...+...|++++|..
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555432 2345566666666667777777777776665222 345566667777777778888887
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 263 FFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 263 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+++.+.+. .| +...+..+...|.+.|++++|..+++++ ...| +...+..+...+...|+.++|.+.++++.+..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777644 34 4667777788888888888888888776 3333 45577778888888899999999999998888
Q ss_pred CCCCchH
Q 043142 340 PHDAGNY 346 (512)
Q Consensus 340 p~~~~~~ 346 (512)
|.++...
T Consensus 240 p~~~~~~ 246 (252)
T 2ho1_A 240 PGSLEYQ 246 (252)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 8876543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.8e-13 Score=123.72 Aligned_cols=171 Identities=13% Similarity=0.089 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+..+.+...+..+...+...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 344444444445555555554444321 23344555555556666666666666666555444555566666666666
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 255 GLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
|++++|..+++.+.+.. ..+...+..+...|.+.|++++|...++++ ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666666666665331 124555566666666666666666666555 1222 3446666666666666777777777
Q ss_pred HHHHhcCCCCCchHHHHH
Q 043142 333 EKLIELEPHDAGNYVILS 350 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~ 350 (512)
+++++..|.++..+..+.
T Consensus 217 ~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHCTTCHHHHHHHT
T ss_pred HHHHccCcchHHHHHHHH
Confidence 776666666655554443
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=134.45 Aligned_cols=268 Identities=13% Similarity=0.038 Sum_probs=153.7
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHH
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWETD----VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVIS 149 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~ 149 (512)
..+......+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++.....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 77 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 77 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------
Confidence 344555566677777777777777777764 222 2456667777777777777777777654321
Q ss_pred HHhccCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHH
Q 043142 150 ASADIAALPQGRELHGFSWRHRF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAM 219 (512)
Q Consensus 150 ~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~ 219 (512)
.+.+- +....++..+...|...|++++|...|++..+ .+ ..++..+...|..
T Consensus 78 ------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 78 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 00000 01122344444455555555555555444321 11 2245555555555
Q ss_pred cCC--------------------hHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 043142 220 HGH--------------------STKALDLFEKMKDE----VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHI 273 (512)
Q Consensus 220 ~g~--------------------~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 273 (512)
.|+ +++|+..+++.... +. ....++..+...+...|++++|...++...+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 555 55565555554322 11 12234556666666677777777766666533111
Q ss_pred CCC----hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 274 DPS----VQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 274 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
.++ ...+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...++++++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 235666667777777777777776655 11111 336667777777788888888888777765422
Q ss_pred C------CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 342 D------AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 342 ~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
. ..++..+...|...|++++|.+.+++..+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 44666777788888888888888777654
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.4e-12 Score=116.18 Aligned_cols=205 Identities=13% Similarity=0.066 Sum_probs=128.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY 186 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 186 (512)
+..++..+...|...|++++|.+.|+++.+.+|+ +..++..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~l~~~~ 52 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------------------------------NELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------------------------------chHHHHHHHHHH
Confidence 4555666666777777777777777766655543 222334444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc-CChHHHHHHHHHhHHCCC-C-CHHHHHHHHHHHhcCCCHHHH
Q 043142 187 AKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMH-GHSTKALDLFEKMKDEVQ-P-DHITFVGVLSACSRGGLFDEG 260 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~-p-~~~t~~~ll~a~~~~g~~~~a 260 (512)
...|++++|.+.|+++.+ .+...|..+...|... |++++|+..|+++..... | +...+..+..++...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 444444444444444321 2334555555666666 666666666666665212 2 345566667777777777777
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 261 RMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK--PDPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 261 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
...++.+.+. .| +...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.
T Consensus 133 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 133 EAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7777777643 34 4666777777777778888887777766 222 345566677777788888888888888888
Q ss_pred hcCCCCCchHHH
Q 043142 337 ELEPHDAGNYVI 348 (512)
Q Consensus 337 ~~~p~~~~~~~~ 348 (512)
+..|+++.....
T Consensus 210 ~~~p~~~~~~~~ 221 (225)
T 2vq2_A 210 ANFPYSEELQTV 221 (225)
T ss_dssp HHCTTCHHHHHH
T ss_pred HhCCCCHHHHHH
Confidence 888877655443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.7e-12 Score=119.76 Aligned_cols=220 Identities=9% Similarity=-0.079 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA----LSAIEEGRRIHEDVIRNKWETDVFVGAA 113 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (512)
..++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|.+.+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444445555555555555555555554421 22344444444444 555555555555555443 3444555
Q ss_pred HHHHHHh----CCChHHHHHHHHhhhhCCCChhHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 114 LIDMYAK----CSCVVNARQVFDKILERDPSEATLVTVISASAD----IAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 114 li~~~~~----~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
+...|.. .+++++|++.|++..+.+ +..++..+...+.. .+++++|...+....+.+ +...+..+...
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 5555555 555555555555555443 44445555555554 555555555555555544 34445555555
Q ss_pred HHh----cCCHHHHHHHHHhcCCC-CchHHHHHHHHHHH----cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc---
Q 043142 186 YAK----CGLVKVARNLFEQLREK-RVVSWNAMITGYAM----HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR--- 253 (512)
Q Consensus 186 y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~--- 253 (512)
|.+ .+++++|...|++..+. +..++..+...|.. .+++++|+..|++..+.+. ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 555 56666666666654432 34455555666666 6666666666666655433 3344555555555
Q ss_pred -CCCHHHHHHHHHHHHH
Q 043142 254 -GGLFDEGRMFFESMVR 269 (512)
Q Consensus 254 -~g~~~~a~~~~~~~~~ 269 (512)
.+++++|...|+...+
T Consensus 234 ~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSCCSTTHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 6666666666666653
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.1e-13 Score=135.93 Aligned_cols=257 Identities=11% Similarity=0.012 Sum_probs=158.4
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCCh-----hHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCchHHHHHHHHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPSE-----ATLVTVISASADIAALPQGRELHGFSWRH----R-FELNVKVKTALVDM 185 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~ 185 (512)
..+...|++++|+..|+++.+.+|+. ..+..+...+...|++++|...+..+++. + .+....++..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 33444444444444444444433332 12333444444444444444444443332 1 11223455566666
Q ss_pred HHhcCCHHHHHHHHHhcCCC---------CchHHHHHHHHHHHcCC-----------------hHHHHHHHHHhHHC---
Q 043142 186 YAKCGLVKVARNLFEQLREK---------RVVSWNAMITGYAMHGH-----------------STKALDLFEKMKDE--- 236 (512)
Q Consensus 186 y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~--- 236 (512)
|...|++++|...|++..+. ...+|..+...|...|+ +++|+..+++....
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66677777776666654321 12456666677777777 77777777665432
Q ss_pred -CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC----CC
Q 043142 237 -VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM----RV 305 (512)
Q Consensus 237 -~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 305 (512)
+. ....++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|...+++. +.
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 11 22346667777788888888888888877643211111 236777888888888888888888766 11
Q ss_pred CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 306 KPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPH------DAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 306 ~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+ ..++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 347778888888999999999999998876432 2347788899999999999999999887654
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=9.3e-13 Score=127.07 Aligned_cols=212 Identities=9% Similarity=0.015 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSA-IEEGRRIHEDVIRNKWETDVFVGAALI 115 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (512)
...|+.+...+.+.|++++|+..|++++.. .|+ ...|..+..++...|+ +++|...++++++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 456788888888888888999888888874 344 4567777788888886 888888888888876 45777888888
Q ss_pred HHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCHH
Q 043142 116 DMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAK-CGLVK 193 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~ 193 (512)
.+|.+.|++++|+..|+++.+.+|+ ...|..+..++...|++++|...++.+++.. +.+...|+.+..+|.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888887774 3456666666677777777777777776654 3355566666666666 44434
Q ss_pred HH-----HHHHHhcCC---CCchHHHHHHHHHHHcC--ChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC
Q 043142 194 VA-----RNLFEQLRE---KRVVSWNAMITGYAMHG--HSTKALDLFEKMKDEVQPDHITFVGVLSACSRG 254 (512)
Q Consensus 194 ~A-----~~~~~~m~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~ 254 (512)
+| ...|++..+ .+...|+.+...+...| +.++|++.+.++ +..+.+...+..+...+.+.
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 44 244443321 22344444444444444 344555555444 22223344444444444443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=2.3e-13 Score=122.96 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=158.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSA 250 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a 250 (512)
.....+..+...+.+.|++++|...|+++.+. +...|..+...|...|++++|+..|++..+..+.+...+..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34567778888899999999999999987643 467888899999999999999999999998877788889999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHH
Q 043142 251 CSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A 328 (512)
+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999997642 336788999999999999999999999887 3333 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 329 ELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...++++.+..|.++.++..++.+|...|++++|.+.+++..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999987543
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1e-12 Score=130.48 Aligned_cols=344 Identities=9% Similarity=-0.056 Sum_probs=223.7
Q ss_pred HHHHHHHccCChHHHHHHHccCCC-CCchHHHHHHHHHHhcCCc---hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQ-RNLFLWNVLIRAYAWNGPY---EVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
.+...+.+.|++++|.++|++..+ .++.++..|...|...|++ ++|+..|++..+. +...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 456677889999999999988654 3667777777788888888 8999999988754 4445666666444444
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH---HHHHHHhhhhCCCChhHHHHHHHHHhccCChHH
Q 043142 88 -----AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVN---ARQVFDKILERDPSEATLVTVISASADIAALPQ 159 (512)
Q Consensus 88 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~ 159 (512)
++++|.+.+++..+.|. ...+..|...|...+..+. +.+.+......+ +......+...+...+.++.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCccc
Confidence 78899999999998763 2367778888887766444 444444443332 34566667777777775655
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHhcCCCC---chHHHHHHHHHHHc----CChHHHHHH
Q 043142 160 GRELHGFSWRHRFELNVKVKTALVDMYAKCG---LVKVARNLFEQLREKR---VVSWNAMITGYAMH----GHSTKALDL 229 (512)
Q Consensus 160 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~----g~~~~A~~~ 229 (512)
+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+.+ ...+..+...|... +++++|+..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 5544443333323334447888888999999 8899999998876443 23346666667554 688999999
Q ss_pred HHHhHHCCCCCHHHHHHHHHH-H--hcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-----ChHHHHHHHH
Q 043142 230 FEKMKDEVQPDHITFVGVLSA-C--SRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSG-----RLDEACDLIM 301 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~ 301 (512)
|++.. .+ +...+..+... + ...+++++|...|++..+. | +...+..|..+|. .| ++++|..+|+
T Consensus 240 ~~~aa-~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99987 33 33344445444 3 4588999999999988643 3 5667777777777 45 8999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCC
Q 043142 302 QMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 302 ~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 373 (512)
+.- .-+...+..|...|.. ..++++|...|+++.+.+ ++.....|..+|.. ..+.++|...++...+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 887 5566677777766665 348999999999988755 45677788888875 358889999988888777
Q ss_pred C
Q 043142 374 I 374 (512)
Q Consensus 374 ~ 374 (512)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=5.9e-13 Score=132.26 Aligned_cols=311 Identities=13% Similarity=0.054 Sum_probs=221.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI---EEGRRIHEDVIRNKWETDVFVGAALIDMYAK 120 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (512)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.|++..+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788999999999999998876 333444555556667777 8999999988854 55566777775655
Q ss_pred CC-----ChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--
Q 043142 121 CS-----CVVNARQVFDKILERDPSEATLVTVISASADIAAL---PQGRELHGFSWRHRFELNVKVKTALVDMYAKCG-- 190 (512)
Q Consensus 121 ~g-----~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-- 190 (512)
.| ++++|.+.|++..+.++.. .+..+...+...+.. ..+.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~-A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN-TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS-CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 55 7889999999998876433 566666666555443 34555555555555 3456777888888877
Q ss_pred --CHHHHHHHHHhcCCCCchHHHHHHHHHHHcC---ChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC----CCHHHHH
Q 043142 191 --LVKVARNLFEQLREKRVVSWNAMITGYAMHG---HSTKALDLFEKMKDEVQPDHITFVGVLSACSRG----GLFDEGR 261 (512)
Q Consensus 191 --~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~----g~~~~a~ 261 (512)
+.+.+..+++.....+..++..+...|...| +.++|+..|++..+.+.++...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 5566777788877778889999999999999 899999999999999988888777777777665 7999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-H--hccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHH
Q 043142 262 MFFESMVRDYHIDPSVQHYTCMVDL-L--GHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHG-----HVKLAELALE 333 (512)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~ 333 (512)
..|+... .-+...+..|..+ | ...+++++|+++|++.-..-+...+..|...|. .| ++++|...|+
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9999885 2256667777776 4 568999999999998732336677777877776 55 9999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 043142 334 KLIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 334 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 374 (512)
++. |.++..+..|..+|.. ..++++|...|++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 998 7788899999999987 3499999999999988775
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3.8e-13 Score=131.49 Aligned_cols=295 Identities=11% Similarity=0.037 Sum_probs=201.8
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-
Q 043142 36 RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-----FTFPFALKACSALSAIEEGRRIHEDVIRN----KWE- 105 (512)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~- 105 (512)
.....+......+...|++++|+..|+++...+ |+. ..+..+...+...|++++|...+.+.++. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 355667778889999999999999999998863 443 46777888899999999999999987654 211
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 043142 106 TDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDM 185 (512)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 185 (512)
....++..+...|...|++++|...|++..+..|... +. .....++..+...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~---------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-------------DK---------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------CH---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------cc---------------cchHHHHHHHHHH
Confidence 2255778888899999999999999988765432100 00 0012233444444
Q ss_pred HHhcCC--------------------HHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHC
Q 043142 186 YAKCGL--------------------VKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDE 236 (512)
Q Consensus 186 y~~~g~--------------------~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (512)
|...|+ +++|...|++..+ .+ ..+|..+...|...|++++|+..+++....
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555 5555554444321 11 245666777777778888888777776543
Q ss_pred CC--CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---
Q 043142 237 VQ--PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM--- 303 (512)
Q Consensus 237 ~~--p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m--- 303 (512)
.. ++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|...+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 22 22 236777777888888888888888877543211111 457778888888889999988888776
Q ss_pred -CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhccChh
Q 043142 304 -RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEP------HDAGNYVILSNIYARAANWE 360 (512)
Q Consensus 304 -~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 360 (512)
+..++ ..++..+...+...|++++|...++++++..+ ....++..+...|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 44778888899999999999999999987632 23456677788887777664
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=1.8e-13 Score=129.72 Aligned_cols=266 Identities=13% Similarity=0.033 Sum_probs=168.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHh
Q 043142 77 PFALKACSALSAIEEGRRIHEDVIRNKWETD----VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASA 152 (512)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~ 152 (512)
......+...|++++|...++++++.. +.+ ..++..+...|...|++++|.+.|++..+..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 73 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 73 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------------
Confidence 334455666677777777777776664 222 2456666667777777777777766654321
Q ss_pred ccCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCC
Q 043142 153 DIAALPQGRELHGFSWRHRF-ELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGH 222 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~ 222 (512)
.+.+. +....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+
T Consensus 74 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 ---------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ---------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 00010 11133445555666666666666666655431 11 2355666666666666
Q ss_pred --------------------hHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043142 223 --------------------STKALDLFEKMKDE----VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS 276 (512)
Q Consensus 223 --------------------~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 276 (512)
+++|...+++.... +. ....++..+...+...|++++|...++...+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 66776666665432 11 22345666777777888888888888776543211111
Q ss_pred ----hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 043142 277 ----VQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHD-- 342 (512)
Q Consensus 277 ----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-- 342 (512)
...+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...++++++..|..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 336777788888888888888888765 11112 3467778888889999999999999988764322
Q ss_pred ----CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 343 ----AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 343 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..++..+...|.+.|++++|.+.+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347778899999999999999999888764
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=6.9e-12 Score=115.70 Aligned_cols=229 Identities=14% Similarity=0.001 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 107 DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASAD----IAALPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
+..++..+...|.+.|++++|.+.|++..+.+ +..++..+...+.. .+++++|...+....+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45566666677777777777777777666532 23344444444444 555555555555555443 34444444
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc----CCCHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR----GGLFD 258 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~----~g~~~ 258 (512)
..+|... ....+++++|+..|++..+.+ +...+..+...+.. .++++
T Consensus 81 g~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 81 GNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp HHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH
Confidence 4444440 000444445555554444432 33444444444544 55555
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHH
Q 043142 259 EGRMFFESMVRDYHIDPSVQHYTCMVDLLGH----SGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAEL 330 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~ 330 (512)
+|...|++..+. + +...+..+...|.. .+++++|+..+++.-...+...+..+...+.. .+++++|..
T Consensus 132 ~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 132 KAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp HHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred HHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 555555555432 1 33444445555554 55666666655554111234455556666666 666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 043142 331 ALEKLIELEPHDAGNYVILSNIYAR----AANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 331 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 374 (512)
.++++.+.+| +..+..+..+|.. .+++++|.+.+++..+.|.
T Consensus 208 ~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 208 RYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 6666666654 3456666666666 6667777777766665553
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-12 Score=128.58 Aligned_cols=270 Identities=10% Similarity=0.015 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCChh
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-----FTFPFALKACSALSAIEEGRRIHEDVIRNK-----WETDVF 109 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~ 109 (512)
.+..+...+...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.+.+++.++.. .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444555666677777777777776664 2332 245555566666677777776666655431 012334
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHh
Q 043142 110 VGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHR-FELNVKVKTALVDMYAK 188 (512)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~ 188 (512)
++..+...|...|++++|...|++..+..+ +.+ .+....++..+...|..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-----------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665543210 000 01123355566666666
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC
Q 043142 189 CGL-----------------VKVARNLFEQLRE-----K----RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD 240 (512)
Q Consensus 189 ~g~-----------------~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~ 240 (512)
.|+ +++|...|++..+ . ....|..+...|...|++++|+..|++...... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666666655432 1 124677777888888888888888888765432 22
Q ss_pred ----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-CC---CCC
Q 043142 241 ----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM-RV---KPD 308 (512)
Q Consensus 241 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~ 308 (512)
..++..+...+...|++++|...++...+...-.. ....+..+...|.+.|++++|...+++. .. .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677788888899999999998887764321111 2467788888899999999999988876 11 111
Q ss_pred ----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 309 ----PGVWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 309 ----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
..++..+...+...|++++|...+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33778888899999999999999999988764
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=1.4e-11 Score=115.80 Aligned_cols=217 Identities=9% Similarity=0.031 Sum_probs=150.6
Q ss_pred HHHHHHHHhhhhCCCCh-hHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 043142 125 VNARQVFDKILERDPSE-ATLVTVISASA-------DIAAL-------PQGRELHGFSWRHRFELNVKVKTALVDMYAKC 189 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~-~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 189 (512)
++|..+|++....+|+. ..|..++..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666665555533 34444444433 23554 66666666666632234556777777777888
Q ss_pred CCHHHHHHHHHhcCCC---Cch-HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH-hcCCCHHHHHHHH
Q 043142 190 GLVKVARNLFEQLREK---RVV-SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC-SRGGLFDEGRMFF 264 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~---~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~-~~~g~~~~a~~~~ 264 (512)
|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+..+++...|....... ...|++++|..+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776542 233 7888888888888888888888888876665555554443332 2368899999999
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 265 ESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-R---VKP--DPGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 265 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+..++. .| +...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.+
T Consensus 193 ~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 193 ELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888754 34 6778888888888889999999888877 2 244 345888888888888999999999999998
Q ss_pred cCCCCCc
Q 043142 338 LEPHDAG 344 (512)
Q Consensus 338 ~~p~~~~ 344 (512)
..|+++.
T Consensus 270 ~~p~~~~ 276 (308)
T 2ond_A 270 AFREEYE 276 (308)
T ss_dssp HTTTTTS
T ss_pred Hcccccc
Confidence 8887543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=5.2e-12 Score=108.90 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
...|..+...|.+.|++++|++.|++..+..+-+..++..+..++.+.|++++|...+...... .| +...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHHHH
Confidence 4556777777777777777777777777766666677777777777788888888777777643 33 4566666777
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
.+...++++.|...+++. ...| +...|..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 777778888887777766 2333 45577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCC
Q 043142 364 KLRKLMIDRG 373 (512)
Q Consensus 364 ~~~~~m~~~g 373 (512)
+.|++..+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888877653
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.6e-12 Score=121.68 Aligned_cols=272 Identities=11% Similarity=0.048 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CCh
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-----FTFPFALKACSALSAIEEGRRIHEDVIRN----KWE-TDV 108 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~ 108 (512)
..+......+...|++++|+..|+++.+.. |+. ..+..+...+...|++++|.+.+...++. +.. ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566778899999999999999998853 443 46777888899999999999999987654 211 235
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhhhhCC---CC----hhHHHHHHHHHhccCC-------------hHHHHHHHHHHH
Q 043142 109 FVGAALIDMYAKCSCVVNARQVFDKILERD---PS----EATLVTVISASADIAA-------------LPQGRELHGFSW 168 (512)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---pd----~~t~~~ll~~~~~~~~-------------~~~a~~~~~~~~ 168 (512)
.++..+...|...|++++|...|++..+.. ++ ..++..+...+...|+ .+.+...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----- 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA----- 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-----
Confidence 677888889999999999999998875532 11 1133334444444444 0000000
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-
Q 043142 169 RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ- 238 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 238 (512)
+++|...+++..+ .+ ...+..+...|...|++++|...+++......
T Consensus 159 -----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 159 -----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4444444443221 01 23556666667777777777777776654321
Q ss_pred -CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC----CC
Q 043142 239 -PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM----RV 305 (512)
Q Consensus 239 -p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 305 (512)
++ ..++..+...+...|++++|..+++...+...-.++ ..++..+...|...|++++|...+++. +.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 22 235666777777778888888777776543111111 456677778888888888888887765 10
Q ss_pred CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 043142 306 KPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEP 340 (512)
Q Consensus 306 ~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 340 (512)
.++ ..++..+...+...|++++|...++++++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 111 33677788888999999999999999888764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=1.3e-11 Score=116.20 Aligned_cols=211 Identities=9% Similarity=0.032 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hCCCh-------HHHHHHHHhhhh-CCCChh-HHHHHHHHHhcc
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYA-------KCSCV-------VNARQVFDKILE-RDPSEA-TLVTVISASADI 154 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~~pd~~-t~~~ll~~~~~~ 154 (512)
+|..+|++.++.. +.++.+|..++..+. +.|++ ++|..+|++..+ .+|+.. .|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444555554432 334445554444443 23553 555555555555 355332 455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHH-HHcCChHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVK-VKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGY-AMHGHSTKALDL 229 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~-~~~g~~~~A~~~ 229 (512)
|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|.++|++..+.+ ...|....... ...|+.++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55666666665555532 11222 56666666666677777777776655422 23333222221 125777777777
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
|++..+..+.+...+..++..+.+.|++++|..+|++.++...+.| ....|..++..+.+.|+.++|..+++++
T Consensus 192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777665555666677777777777888888888887765322344 3556777777777778888887777766
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=9.9e-12 Score=120.81 Aligned_cols=225 Identities=7% Similarity=-0.012 Sum_probs=129.3
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhC---CCC----hhHHHHHHHHHhccCChHHHHHHHHHHHHcC--C----CCchHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILER---DPS----EATLVTVISASADIAALPQGRELHGFSWRHR--F----ELNVKVKT 180 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~---~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 180 (512)
....+...|++++|...|++..+. .++ ..++..+...+...|+++.|...+....+.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667778888888888777654 122 2345566666666777777776666665421 1 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHH-----CC-CCCHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKD-----EV-QPDHITFV 245 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~p~~~t~~ 245 (512)
.+...|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++... .. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666777777777777777665432 11 13566666677777777777777766655 23 22344566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCC--CC-ChhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCCHh-HHHHHHHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHI--DP-SVQHYTCMVDLLGHSGR---LDEACDLIMQMRVKPDPG-VWGALLNS 318 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~ 318 (512)
.+...+...|++++|...+++..+...- .| ....+..+...|...|+ +++|+.++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6666667777777777766665432110 11 12224455556666666 666666666654333322 44455555
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 043142 319 CKLHGHVKLAELALEKLIEL 338 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~ 338 (512)
|...|++++|...++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 55666666666666555543
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=2.3e-12 Score=128.78 Aligned_cols=206 Identities=10% Similarity=-0.011 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhH
Q 043142 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLV-KVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMK 234 (512)
Q Consensus 159 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 234 (512)
.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..
T Consensus 86 ~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 86 KTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444433332 234566777777777788888 888888877643 235678888888888888889998888887
Q ss_pred HCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc--------CChHHH
Q 043142 235 DEVQPDHITFVGVLSACSRG---------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS--------GRLDEA 296 (512)
Q Consensus 235 ~~~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A 296 (512)
+.. |+...+..+..++... |++++|...|++.++. .| +...|..+..+|... |++++|
T Consensus 165 ~~~-p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 165 THC-KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp TTC-CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hhC-CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 654 5668888888888888 9999999999998754 55 678888889999888 899999
Q ss_pred HHHHHhC-CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 297 CDLIMQM-RVKP----DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 297 ~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
++.|++. ...| +...|..+...+...|++++|.+.|+++++.+|.++.++..+..++...|++++|.+.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999887 3455 66799999999999999999999999999999999999999999999999999999765543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=6.3e-12 Score=108.38 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=143.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+.....+.+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 567888899999999999999999998753 34678888999999999999999999999887777777888888889
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLA 328 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A 328 (512)
...++++.+...+....+. .| +...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998754 45 6778889999999999999999999887 3445 456899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 043142 329 ELALEKLIELEPHDA 343 (512)
Q Consensus 329 ~~~~~~~~~~~p~~~ 343 (512)
++.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.3e-11 Score=120.00 Aligned_cols=224 Identities=10% Similarity=0.028 Sum_probs=173.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----chHHH
Q 043142 147 VISASADIAALPQGRELHGFSWRH----RFEL-NVKVKTALVDMYAKCGLVKVARNLFEQLRE-----KR-----VVSWN 211 (512)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~-----~~~~~ 211 (512)
....+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ .+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555678899999999999999874 1111 346788999999999999999999887642 11 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC--CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCC-ChhHHH
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ--PD----HITFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDP-SVQHYT 281 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~--p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 281 (512)
.+...|...|++++|+..|++..+... ++ ..++..+...+...|++++|...+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999865422 22 2478889999999999999999999887521 2213 466788
Q ss_pred HHHHHHhccCChHHHHHHHHhC-C---C--CCCH-hHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQM-R---V--KPDP-GVWGALLNSCKLHGH---VKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m-~---~--~p~~-~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
.+...|.+.|++++|...+++. . . .|.. ..+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999876 1 1 1222 245667777888888 77777777766 222444567889999
Q ss_pred HHHhccChhHHHHHHHHHHh
Q 043142 352 IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 352 ~~~~~g~~~~a~~~~~~m~~ 371 (512)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=9.5e-12 Score=124.36 Aligned_cols=210 Identities=11% Similarity=0.019 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh-HHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV-VNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGF 166 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~ 166 (512)
++.+.+.+....+.. +.+...+..+...|...|++ ++|++.|++..+.+|+ ...|..+...+...|++++|.+.++.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555444332 33555666666666666666 6666666666666654 34566666666666666666666666
Q ss_pred HHHcCCCCchHHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc--------CChHHH
Q 043142 167 SWRHRFELNVKVKTALVDMYAKC---------GLVKVARNLFEQLRE---KRVVSWNAMITGYAMH--------GHSTKA 226 (512)
Q Consensus 167 ~~~~g~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--------g~~~~A 226 (512)
+++.. |+...+..+...|... |++++|...|++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66543 4456666677777777 777777777777542 3456777788888777 889999
Q ss_pred HHHHHHhHHCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHh
Q 043142 227 LDLFEKMKDEVQ---PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQ 302 (512)
Q Consensus 227 ~~~~~~m~~~~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (512)
+..|++..+..+ .+...+..+..++...|++++|...|++..+. .| +...+..+..++...|++++|++.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887666 68888999999999999999999999998754 56 566788889999999999999988877
Q ss_pred CC
Q 043142 303 MR 304 (512)
Q Consensus 303 m~ 304 (512)
+.
T Consensus 318 ~~ 319 (474)
T 4abn_A 318 TK 319 (474)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=5.9e-10 Score=114.76 Aligned_cols=369 Identities=10% Similarity=0.013 Sum_probs=220.4
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCC---chHHHHHHHHHHHCC-CCCCcchH
Q 043142 4 GFHPVLATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGP---YEVAIELYYRLLEIG-LVPDNFTF 76 (512)
Q Consensus 4 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~t~ 76 (512)
+.|...|..++..+.+.+.++.|+.+|+++.. .....|..-+..-.+.|. ++.+.++|++.+... ..|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45778999999999999999999999998753 366788888888888888 999999999998753 13677677
Q ss_pred HHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CC-ChhHHHHHHHHHHh---------CCChHHHHHHHHhhhh
Q 043142 77 PFALKACSALSAI--------EEGRRIHEDVIRN-KW-ET-DVFVGAALIDMYAK---------CSCVVNARQVFDKILE 136 (512)
Q Consensus 77 ~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 136 (512)
..-+.-..+.++. +...++|+..+.. |. .+ +..+|...+..... .++++.+.++|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7766655444433 3455788776653 55 44 35688888876543 3456788899988876
Q ss_pred CCCCh--hHH---HHHHHHHhc----------cCChHHH-----------------------------------------
Q 043142 137 RDPSE--ATL---VTVISASAD----------IAALPQG----------------------------------------- 160 (512)
Q Consensus 137 ~~pd~--~t~---~~ll~~~~~----------~~~~~~a----------------------------------------- 160 (512)
..... .+| ..+...... ...++.|
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 42111 111 111111000 0011111
Q ss_pred --------------------------HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CCchHH
Q 043142 161 --------------------------RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR-NLFEQLRE---KRVVSW 210 (512)
Q Consensus 161 --------------------------~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~---~~~~~~ 210 (512)
..+|++++.. .+.+..+|-..+..+.+.|+.++|. ++|++... .+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 2223333322 1223444444455555566666665 77666542 234456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCC----------CCC------------HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEV----------QPD------------HITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~----------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
-..+...-+.|++++|.++|+++.+.. .|+ ...|...+....+.|.++.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666667777777777777766431 131 2245555666666677777777777775
Q ss_pred HhcCCCCChhHHHHHHHHHhccC-ChHHHHHHHHhC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---C
Q 043142 269 RDYHIDPSVQHYTCMVDLLGHSG-RLDEACDLIMQM--RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPH---D 342 (512)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~ 342 (512)
+..+ .+....|...+.+-.+.+ +.+.|.++|+.. ....+...|...+.-....|+.+.|..+|+++++..|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 4300 112233333333333333 467777777665 12224445666666666677777777777777776652 3
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 343 AGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
...|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34566666666777777777777777766543
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1.4e-11 Score=128.37 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 043142 207 VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVD 285 (512)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 285 (512)
..+|+.+...|.+.|++++|++.|++..+..+-+..++..+..++.+.|++++|+..|++.++. .| +...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 3456667777777777777777777777665556677777777777777777777777777643 55 4667777777
Q ss_pred HHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHH
Q 043142 286 LLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVA 363 (512)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 363 (512)
+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|++.|+++++++|+++.++..|+.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 777777777777777766 34454 4478888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 043142 364 KLRKLMID 371 (512)
Q Consensus 364 ~~~~~m~~ 371 (512)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=5.1e-11 Score=102.22 Aligned_cols=160 Identities=18% Similarity=0.115 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLG 288 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 288 (512)
|..+...+...|++++|+..|+++....+.+...+..+...+...|++++|..+++.+.+. .| +...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554444444555555555566666666666666665433 22 4455556666666
Q ss_pred ccCChHHHHHHHHhC-CC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 289 HSGRLDEACDLIMQM-RV-KPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
..|++++|.+.++++ .. ..+...|..+...+...|++++|...++++.+..|.++..+..++..|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555 11 2344566677777777777777777777777777777777777777777778888887777
Q ss_pred HHHHhC
Q 043142 367 KLMIDR 372 (512)
Q Consensus 367 ~~m~~~ 372 (512)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.5e-12 Score=120.65 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=102.8
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHC-------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh------C
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEI-------GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN------K 103 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g 103 (512)
+..+|..+...+...|++++|+.+|+++.+. .......++..+...+...|++++|.+.+...++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888888888888888887652 11122345666777777888888888888777664 2
Q ss_pred C-CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC--------C-ChhHHHHHHHHHhccCChHHHHHHHHHHHHc---
Q 043142 104 W-ETDVFVGAALIDMYAKCSCVVNARQVFDKILERD--------P-SEATLVTVISASADIAALPQGRELHGFSWRH--- 170 (512)
Q Consensus 104 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 170 (512)
- +....++..+...|...|++++|...|+++.+.. | ....+..+...+...|++++|...+..+.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2235567777788888888888888887765431 1 1123445555555556666666655555443
Q ss_pred ---C-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 043142 171 ---R-FELNVKVKTALVDMYAKCGLVKVARNLFEQL 202 (512)
Q Consensus 171 ---g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 202 (512)
+ .+....++..+...|.+.|++++|...|+++
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1112334455555555555555555555544
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.8e-11 Score=114.72 Aligned_cols=230 Identities=14% Similarity=0.127 Sum_probs=165.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 043142 142 ATLVTVISASADIAALPQGRELHGFSWRH-------RFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-------K-- 205 (512)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~-- 205 (512)
.++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++..+ +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56778888889999999999999988874 3344567788899999999999999999987652 1
Q ss_pred --CchHHHHHHHHHHHcCChHHHHHHHHHhHHC------CC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----
Q 043142 206 --RVVSWNAMITGYAMHGHSTKALDLFEKMKDE------VQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY---- 271 (512)
Q Consensus 206 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 271 (512)
...+|..+...|...|++++|+..|++..+. +. .....+..+...+...|++++|..+++.+.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1467888889999999999999999998764 22 345667888889999999999999999886531
Q ss_pred -CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC----------CCCCHh-H------HHHHHHHHHHcCCHHHHHHHH
Q 043142 272 -HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQMR----------VKPDPG-V------WGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 272 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~~~-~------~~~ll~~~~~~g~~~~A~~~~ 332 (512)
+-.| ....+..+...|.+.|++++|.+.++++- ..+... . +..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1133 45678888999999999999999987761 112111 2 222223334455666667777
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777788888999999999999999999999998765
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=3.1e-10 Score=109.99 Aligned_cols=224 Identities=9% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCC---CC----hhHHHHHHHHHhccCChHHHHHHHHHHHHcC--C---C-CchHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERD---PS----EATLVTVISASADIAALPQGRELHGFSWRHR--F---E-LNVKVKT 180 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~---pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~---~-~~~~~~~ 180 (512)
....+...|++++|...|++..+.. ++ ..++..+...+...|+++.|...+..+.+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445566777777777777665431 22 2345556666666777777776666655421 1 1 1244666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHhHH-----CCCCCHHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLRE-----KR----VVSWNAMITGYAMHGHSTKALDLFEKMKD-----EVQPDHITFVG 246 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~p~~~t~~~ 246 (512)
.+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|+..|++... ..+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 777888888888888887776542 12 24677777788888888888888888766 44433667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCCHh-HHHHHHHHH
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDLLGHSGR---LDEACDLIMQMRVKPDPG-VWGALLNSC 319 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~~ 319 (512)
+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +.+|+.++++.+..|+.. .+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 788888888888888888887654322112 3345556666667777 777777777764333333 555666667
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 043142 320 KLHGHVKLAELALEKLIE 337 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~ 337 (512)
...|++++|...++++.+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777777654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.3e-09 Score=105.29 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------C---C-chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----C-CHH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLRE-------K---R-VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----P-DHI 242 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~-------~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p-~~~ 242 (512)
...+...|...|++++|...+++..+ + . ...+..+...+...|++++|...+++...... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34455566666666666666655431 1 1 13445566667777777777777777654322 1 124
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCChHHHHHHHHhCC-CCCC-----HhH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYT-----CMVDLLGHSGRLDEACDLIMQMR-VKPD-----PGV 311 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~ 311 (512)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666777777888888888777754311111111111 23344667888888888887772 1221 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELEPH-----D-AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+..+...+...|++++|...++++.+..+. + ...+..+..++...|+.++|...+++..+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566777788888999998888888765321 1 135667788888899999999888877643
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=1.4e-10 Score=103.70 Aligned_cols=203 Identities=9% Similarity=0.033 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHH
Q 043142 140 SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITG 216 (512)
Q Consensus 140 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~ 216 (512)
|+..+......+...|++++|...|..+++...+++...+..+..+|.+.|++++|...|++..+. +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 456777788888889999999999998888765466777777888899999999999998887543 35678888888
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDH-------ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS---VQHYTCMVDL 286 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~ 286 (512)
|...|++++|+..|++..+..+.+. ..|..+...+...|++++|...|+..+ .+.|+ ...+..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHHH
Confidence 9999999999999998887766455 457777788888899999999998886 34665 4566777777
Q ss_pred HhccCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 287 LGHSGRLDEACDLIMQMR-V-KPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
|...|+. .++++. + ..+...|..+. ....+.+++|...++++++++|.++.+...+..+
T Consensus 163 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 163 FYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7655432 233321 1 22333444333 2345668999999999999999987766655544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.1e-10 Score=98.29 Aligned_cols=167 Identities=17% Similarity=0.077 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHh
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACS 252 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~ 252 (512)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+..+.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346677888899999999999999998753 45778889999999999999999999998877777888899999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHH
Q 043142 253 RGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAEL 330 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 330 (512)
..|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999997542 336788889999999999999999999887 2233 56689999999999999999999
Q ss_pred HHHHHHhcCCCCCc
Q 043142 331 ALEKLIELEPHDAG 344 (512)
Q Consensus 331 ~~~~~~~~~p~~~~ 344 (512)
.++++++..|.++.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999998887654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=2.7e-10 Score=110.43 Aligned_cols=297 Identities=10% Similarity=0.030 Sum_probs=209.4
Q ss_pred CCCchhHHHHHHHHH--HccCChHHHHHHHccCCC--------CCchHHHHHHHH--HHhcCCchHHH---------HHH
Q 043142 3 FGFHPVLATKLVHLY--SACDCLHNAHQLFDRIPQ--------RNLFLWNVLIRA--YAWNGPYEVAI---------ELY 61 (512)
Q Consensus 3 ~~~~~~~~~~Li~~y--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~ 61 (512)
.-|+..+.+.|-..| .+.+++++|.++++++.+ +++..|-.++.. ....+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 346777888888888 889999999999887532 234444444432 11123333333 555
Q ss_pred HHHHHCCCCCCc-c---hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CC----ChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 62 YRLLEIGLVPDN-F---TFPFALKACSALSAIEEGRRIHEDVIRNKW-ET----DVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 62 ~~m~~~g~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+.+.....+.+. . .+......+...|++++|...+.+..+... .+ ...++..+...|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555332111111 1 122234456788999999999999886521 12 24578889999999999999999998
Q ss_pred hhhhCC---CC-----hhHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchHHHHHHHHHHHhcCCHHHHHHHH
Q 043142 133 KILERD---PS-----EATLVTVISASADIAALPQGRELHGFSWRH----RFE-LNVKVKTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 133 ~m~~~~---pd-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~ 199 (512)
+..+.. ++ ..++..+...+...|++++|...+..+++. +-+ ....++..+...|...|++++|...|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876532 22 246778888999999999999999988763 211 12457788999999999999999999
Q ss_pred HhcCC-----CC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----C-CHHHHHHHHHHHhcCCC---HHHHHHH
Q 043142 200 EQLRE-----KR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----P-DHITFVGVLSACSRGGL---FDEGRMF 263 (512)
Q Consensus 200 ~~m~~-----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p-~~~t~~~ll~a~~~~g~---~~~a~~~ 263 (512)
++..+ .+ ..++..+...|.+.|++++|...+++...... | ....+..+...+...++ +++|..+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88764 33 45778888999999999999999999876432 2 23345666667778888 7778777
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 264 FESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 264 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
++.. +..| ....+..+...|.+.|++++|...|++.
T Consensus 326 ~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 326 FEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7763 2233 3456778999999999999999998875
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=4.4e-09 Score=101.50 Aligned_cols=260 Identities=12% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHccCChHHHHHHHccC----CCCCc----hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CCc----chHHHHHH
Q 043142 15 HLYSACDCLHNAHQLFDRI----PQRNL----FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PDN----FTFPFALK 81 (512)
Q Consensus 15 ~~y~~~g~~~~A~~~f~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~ 81 (512)
..+...|++++|...+++. +..+. .+++.+...+...|++++|...+++....... ++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444556666666555442 11111 13444445555556666666665554431100 011 11233444
Q ss_pred HHhccCChHHHHHHHHHHHHh----CCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhcc
Q 043142 82 ACSALSAIEEGRRIHEDVIRN----KWE--T-DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADI 154 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~ 154 (512)
.+...|++++|.+.++..++. +.+ | ...++..+...|...|++++|...+++.....|..
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 168 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY------------- 168 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-------------
Confidence 455555555555555554432 111 1 12233444555555555555555555544322210
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCc-hHHHH-----HHHHHHHcCChH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR----EKRV-VSWNA-----MITGYAMHGHST 224 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~-~~~~~-----li~~~~~~g~~~ 224 (512)
+.+....++..+...+...|++++|...+++.. ..+. ..|.. .+..+...|+++
T Consensus 169 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 169 ----------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp ----------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 000012334444455555555555555554432 1111 11111 112244555555
Q ss_pred HHHHHHHHhHHCCC-CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCCh-hHHHHHHHHHhccCChHHH
Q 043142 225 KALDLFEKMKDEVQ-PD---HITFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDPSV-QHYTCMVDLLGHSGRLDEA 296 (512)
Q Consensus 225 ~A~~~~~~m~~~~~-p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~-~~~~~li~~~~~~g~~~~A 296 (512)
+|...+++...... +. ...+..+...+...|++++|...++...... +..++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 55555555443222 11 1233444555555566666665555543221 111111 2445555566666666666
Q ss_pred HHHHHhC
Q 043142 297 CDLIMQM 303 (512)
Q Consensus 297 ~~~~~~m 303 (512)
...+++.
T Consensus 313 ~~~l~~a 319 (373)
T 1hz4_A 313 QRVLLDA 319 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=3.5e-10 Score=101.08 Aligned_cols=190 Identities=11% Similarity=-0.025 Sum_probs=132.2
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLRE----KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLS 249 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 249 (512)
.++..+..+...|.+.|++++|...|+...+ ++...|..+...+...|++++|+..|++.....+.+...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3456777777888888888888888877542 455666667777888888888888888887766666677777888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCC-Ch-------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC--H-hHHHHHHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYHIDP-SV-------QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD--P-GVWGALLN 317 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~-~~~~~ll~ 317 (512)
++...|++++|...++..++. .| +. ..|..+...+.+.|++++|++.+++. ...|+ . ..|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 888888888888888887754 44 33 44666777777788888888888776 45565 3 35666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 318 SCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 318 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+.. .+...++++..+.+.++..|..+. ....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6543 344556666666665544443332 344566799999999887754
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=2.4e-08 Score=102.84 Aligned_cols=221 Identities=6% Similarity=-0.032 Sum_probs=163.7
Q ss_pred HHHHhhhhCCC-ChhHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 043142 129 QVFDKILERDP-SEATLVTVISASADIAALPQGR-ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-- 204 (512)
Q Consensus 129 ~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-- 204 (512)
.+|+++....| +...|...+.-+...|+.+.|. .+++..+.. .+.+...+-.++...-+.|+++.|.++|+.+..
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444444444 2334555555556678888996 999999875 456777888899999999999999999998753
Q ss_pred -----------CC------------chHHHHHHHHHHHcCChHHHHHHHHHhHHC-CCCCHHHHHHHHHHHhc-CCCHHH
Q 043142 205 -----------KR------------VVSWNAMITGYAMHGHSTKALDLFEKMKDE-VQPDHITFVGVLSACSR-GGLFDE 259 (512)
Q Consensus 205 -----------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~a~~~-~g~~~~ 259 (512)
|. ...|...+....+.|..+.|..+|.+..+. ..+....|...+..-.+ .++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 21 235888888888889999999999999877 33334444433322233 356999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043142 260 GRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP----DPGVWGALLNSCKLHGHVKLAELALEK 334 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~ 334 (512)
|..+|+..++.+ .-+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.++.++
T Consensus 489 Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 489 ACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 235667788899889999999999999987 2233 234899999989999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHH
Q 043142 335 LIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 335 ~~~~~p~~~~~~~~l~~~~ 353 (512)
+.+..|+++ ....+++-|
T Consensus 567 ~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 567 FFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHSTTCC-HHHHHHHHT
T ss_pred HHHhCCCCc-HHHHHHHHh
Confidence 999999875 333344433
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=6.5e-10 Score=115.81 Aligned_cols=160 Identities=9% Similarity=-0.014 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMY 186 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 186 (512)
...++.|...|.+.|++++|++.|++..+.+|+ ..++..+..++.+.|++++|.+.|+++++.. +.+...+..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444445555555555555555554444443 2334444444445555555555555444432 22345555566666
Q ss_pred HhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 187 AKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
.+.|++++|.+.|++..+ .+...|+.+...|...|++++|++.|++..+..+-+...+..+..++...|++++|.+.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 666666666666655432 23455666666666666666666666666665555555666666666666666666666
Q ss_pred HHHHH
Q 043142 264 FESMV 268 (512)
Q Consensus 264 ~~~~~ 268 (512)
++++.
T Consensus 168 ~~kal 172 (723)
T 4gyw_A 168 MKKLV 172 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=7.3e-10 Score=103.18 Aligned_cols=160 Identities=14% Similarity=0.032 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCC----CC--CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCC----hh
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEV----QP--DHITFVGVLSACSRG-GLFDEGRMFFESMVRDYHIDPS----VQ 278 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~p--~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~ 278 (512)
|+.+...|...|++++|+..|++..... .+ -..++..+...+... |++++|...|++.++...-..+ ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 3444444444444444444444433211 11 123556666677774 7777777777776543110001 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCCH--------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch----
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDP--------GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN---- 345 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---- 345 (512)
++..+...|.+.|++++|+..|++. ...|+. ..|..+..++...|++++|...+++.++++|.....
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 5667777778888888888877766 222221 145667777888888888888888888888764432
Q ss_pred -HHHHHHHHH--hccChhHHHHHHHHH
Q 043142 346 -YVILSNIYA--RAANWEGVAKLRKLM 369 (512)
Q Consensus 346 -~~~l~~~~~--~~g~~~~a~~~~~~m 369 (512)
+..++.+|. ..+++++|.+.|+.+
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 456677777777544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=1.7e-10 Score=106.29 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CchHHHHHHHHHHHcCChHHHHHHHHHhHHC------C-
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLRE-------K----RVVSWNAMITGYAMHGHSTKALDLFEKMKDE------V- 237 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~- 237 (512)
..++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444555555555555555555544321 0 1234555555555555555555555555432 1
Q ss_pred C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-------
Q 043142 238 Q-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY-----HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM------- 303 (512)
Q Consensus 238 ~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m------- 303 (512)
. ....++..+...+...|++++|..+++++.+.. +-.| ....+..+...|.+.|++++|..++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 223445555566666666666666666554320 0022 2345556666666666666666666544
Q ss_pred ---CCCCCHh-HHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 304 ---RVKPDPG-VWGALLNSCKLHGH------VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 304 ---~~~p~~~-~~~~ll~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
...+... .|..+.......+. +..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0122222 23322222222222 22222222222222233445667777777777777777777776654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=1.4e-09 Score=101.27 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----chHHHHHHHHHHHc-CChHHHHHHHHHhHHCCC--CC----H
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREK-----R----VVSWNAMITGYAMH-GHSTKALDLFEKMKDEVQ--PD----H 241 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~--p~----~ 241 (512)
+++.+..+|.+.|++++|...|++..+. + ..+|+.+...|... |++++|+..|++.....+ .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444555555555555555555443210 1 23566666777775 777777777777654322 11 3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-----
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV-----QHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG----- 310 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----- 310 (512)
.++..+...+...|++++|...|+...+...-.+.. ..+..+..++...|++++|+..+++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 456667777777777777777777776431111111 14566666777777788887777776 3344322
Q ss_pred -HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCC
Q 043142 311 -VWGALLNSCK--LHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 311 -~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
.+..++.++. ..+++++|...|+++.+++|..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2334445443 3456777777777766666643
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=3.3e-09 Score=96.88 Aligned_cols=182 Identities=9% Similarity=-0.018 Sum_probs=121.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CC-HHHH
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREK---R---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PD-HITF 244 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~-~~t~ 244 (512)
.+...+..+...+.+.|++++|...|+.+.+. + ...|..+...|.+.|++++|+..|++..+..+ |. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666677777777777777777776542 2 34566677777777777777777777776544 22 3445
Q ss_pred HHHHHHHhc--------CCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHH
Q 043142 245 VGVLSACSR--------GGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGAL 315 (512)
Q Consensus 245 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 315 (512)
..+..++.. .|++++|...|+.+++. .|+ ......+..... ....+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~-------~~~~~--------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRE-------LRAKL--------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHH-------HHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHH-------HHHHH--------HHHHHHH
Confidence 556666666 77777777777777654 342 222222111100 00000 1124567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------cChhHHHHHHHHHHhCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPHDA---GNYVILSNIYARA----------ANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g 373 (512)
...+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7889999999999999999999998754 4788888899877 89999999999987654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.7e-08 Score=92.49 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=98.4
Q ss_pred HHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 195 ARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 195 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
|...|++..+ ++..++..+..++...|++++|++++.+....++ -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 2333444555666666777777777766655443 3445555666666677777777777766643
Q ss_pred hcCCCC-----ChhHHHHHHHH--Hhc--cCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 043142 270 DYHIDP-----SVQHYTCMVDL--LGH--SGRLDEACDLIMQM-RVKPDPGVWGALLNSCKLHGHVKLAELALEKLIEL- 338 (512)
Q Consensus 270 ~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 338 (512)
. .| +..+...|+.+ ... .+++.+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23334444433 222 23667777777666 22344223333444666677777777777766554
Q ss_pred ---------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 339 ---------EPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 339 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+|.++.++..++..+...|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36666666666655555665 6666666666543
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=2.2e-10 Score=95.00 Aligned_cols=139 Identities=7% Similarity=0.020 Sum_probs=93.4
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDE 295 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 295 (512)
+...|+.++|+..+++.....+.+...+..+...|.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHH
Confidence 344555666666666654433333444555666677777777777777776643 45 56667777777777777777
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 296 ACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELA-LEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 296 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
|+..|++. .+.|+ ...|..+...+...|++++|.+. ++++++++|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777665 34454 45777788888888887765554 588888999888888888777777664
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.9e-09 Score=99.22 Aligned_cols=87 Identities=16% Similarity=0.040 Sum_probs=48.4
Q ss_pred hcCCchHHHHHHHHHHHC-------CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCChhHHHHHH
Q 043142 50 WNGPYEVAIELYYRLLEI-------GLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN------KW-ETDVFVGAALI 115 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 115 (512)
..|++++|+.+|++..+. ..+....++..+...+...|++++|.+.+..+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665431 11112334555666666666666666666666544 11 12344556666
Q ss_pred HHHHhCCChHHHHHHHHhhhh
Q 043142 116 DMYAKCSCVVNARQVFDKILE 136 (512)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~ 136 (512)
..|...|++++|...|++..+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 666666666666666666543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=6.7e-09 Score=94.78 Aligned_cols=200 Identities=10% Similarity=0.033 Sum_probs=140.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----chHH
Q 043142 140 SEATLVTVISASADIAALPQGRELHGFSWRHRFELN---VKVKTALVDMYAKCGLVKVARNLFEQLRE--KR----VVSW 210 (512)
Q Consensus 140 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~ 210 (512)
+...+......+...|++++|...|..+++.. +.+ ...+..+..+|.+.|++++|...|+...+ |+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45677788888999999999999999998864 223 67888899999999999999999999764 21 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 043142 211 NAMITGYAM--------HGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTC 282 (512)
Q Consensus 211 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 282 (512)
..+..++.. .|++++|+..|++.....+.+......+. .+..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 778888888 99999999999999887663322222211 11111000 0122455
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCc---
Q 043142 283 MVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLH----------GHVKLAELALEKLIELEPHDAG--- 344 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~--- 344 (512)
+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 677788888888888888776 22333 23666677777655 8899999999999999998863
Q ss_pred hHHHHHHHHHhccCh
Q 043142 345 NYVILSNIYARAANW 359 (512)
Q Consensus 345 ~~~~l~~~~~~~g~~ 359 (512)
+...+...+.+.+++
T Consensus 234 a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 234 AEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444444433
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=9.8e-10 Score=114.78 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=130.5
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 187 AKCGLVKVARNLFEQLR--------E---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 187 ~~~g~~~~A~~~~~~m~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+..+.+...+..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 66788888888888765 2 345677888888888888888888888888776667778888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELAL 332 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 332 (512)
++++|...|++.++. .| +...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...|
T Consensus 482 ~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888744 56 56778888888888888888 8888776 3444 3457888888888888888888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 333 EKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 333 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
+++++++|.+..++..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888866555
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.1e-08 Score=82.11 Aligned_cols=128 Identities=19% Similarity=0.344 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH 289 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (512)
|..+...+...|++++|+.+|+++....+.+...+..+...+...|++++|..+++.+.+. .|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~-------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP-------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC--------------
Confidence 4444445555555555555555554443334444444444455555555555555544322 11
Q ss_pred cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 290 SGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 290 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
.+...|..+...+...|++++|.+.++++.+..|.++..+..++..|...|++++|.+.++++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 122344444444555555555555555555555555555555555555555555555555555
Q ss_pred Hh
Q 043142 370 ID 371 (512)
Q Consensus 370 ~~ 371 (512)
.+
T Consensus 130 ~~ 131 (136)
T 2fo7_A 130 LE 131 (136)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=2.8e-08 Score=88.45 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCH-HHHHH
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLRE--KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDH-ITFVG 246 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~-~t~~~ 246 (512)
...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+..+ +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555667778888888888888888753 22 24677777888888888888888888877655 221 23444
Q ss_pred HHHHHhc------------------CCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 043142 247 VLSACSR------------------GGLFDEGRMFFESMVRDYHIDPSV-QHYTCMVDLLGHSGRLDEACDLIMQMRVKP 307 (512)
Q Consensus 247 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 307 (512)
+..++.. .|++++|...|+.+++. .|+. ..+.++... +.+.. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~------~~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKD------RL---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHH------HH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHH------HH----
Confidence 4444433 45666666666666533 3422 222111100 00000 00
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDA---GNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
......+...+...|++++|...|+++++..|+++ .++..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999875 56889999999999999999999999877653
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=6.3e-09 Score=96.48 Aligned_cols=175 Identities=10% Similarity=0.004 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 043142 193 KVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYH 272 (512)
Q Consensus 193 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 272 (512)
+.....+......+...+..+...+.+.|++++|...|++.....+.+...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 344445555444455667777788888999999999999998887777788888899999999999999999988643
Q ss_pred CCCChhHHHHH-HHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHH
Q 043142 273 IDPSVQHYTCM-VDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD--AGNYV 347 (512)
Q Consensus 273 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 347 (512)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 5654433332 23366777888888888776 3345 45688999999999999999999999999999987 78899
Q ss_pred HHHHHHHhccChhHHHHHHHHHH
Q 043142 348 ILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887653
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=3.2e-08 Score=90.75 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=138.5
Q ss_pred ccCChHHHHHHHccCCCCCch-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLF-LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHE 97 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 97 (512)
-.|.+..++.-...+.+.+.. .-.-+.++|...|++.... .-.|....+..+.. +...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 367777777765555432222 2222447777777776311 11222222222222 22222 556666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC---ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 98 DVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP---SEATLVTVISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p---d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
+.++.+ +++......+...|...|++++|++++.+....+| +...+..++..+.+.|+.+.|.+.++.|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 666554 44555555677777778888888888887766665 3345666777777888888888888877665 34
Q ss_pred -----chHHHHHHHHH--HHh--cCCHHHHHHHHHhcCCCCch--HHHHHHHHHHHcCChHHHHHHHHHhHHC-------
Q 043142 175 -----NVKVKTALVDM--YAK--CGLVKVARNLFEQLREKRVV--SWNAMITGYAMHGHSTKALDLFEKMKDE------- 236 (512)
Q Consensus 175 -----~~~~~~~li~~--y~~--~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~------- 236 (512)
+..+...|+.+ ... .++.++|..+|+++.+.... +-..++.++.+.|++++|.+.++.+.+.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 23444444444 222 33788888888887654332 3344445777888888888888766543
Q ss_pred ---CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 237 ---VQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 237 ---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
.+.|..++..++......|+ +|.++++++.+
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 13455666566655555666 77788888763
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.2e-08 Score=82.03 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
.+..+...+.+.|++++|..+++++ ... .+...|..+...+...|++++|...++++.+..|.++..+..++..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667778888888888888888876 222 35668888889999999999999999999999999989999999999999
Q ss_pred cChhHHHHHHHHHHhCCC
Q 043142 357 ANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 357 g~~~~a~~~~~~m~~~g~ 374 (512)
|++++|.+.++++.+...
T Consensus 83 ~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP 100 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHHhCC
Confidence 999999999999887543
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.3e-08 Score=104.43 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=151.6
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHc
Q 043142 152 ADIAALPQGRELHGFSW--------RHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMH 220 (512)
Q Consensus 152 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 220 (512)
...|++++|.+.++.++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 33 245677888999999999999999999998764 3567899999999999
Q ss_pred CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHH
Q 043142 221 GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDL 299 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 299 (512)
|++++|+..|++..+..+.+...+..+..++...|++++ ...|++.++. .| +...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998877778888999999999999999 9999999854 56 678899999999999999999999
Q ss_pred HHhC-CCCCCHh-HHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCCch
Q 043142 300 IMQM-RVKPDPG-VWGALLNSCKLHGH-----VKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 300 ~~~m-~~~p~~~-~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 345 (512)
|++. ...|+.. .|..+..++...++ .+...+..+...+..+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 5677754 77777777766555 344444444554554444443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=7.7e-09 Score=88.19 Aligned_cols=156 Identities=11% Similarity=0.089 Sum_probs=96.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-Hhcc
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDL-LGHS 290 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 290 (512)
.+...+.+.|++++|+..|++..+..+.+...+..+..++...|++++|...++.+.+. .|+...+..+... +.+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 34444555555555555555555444444555555555555666666666666555432 2222222111111 1111
Q ss_pred CChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhccChhHHHHHH
Q 043142 291 GRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD--AGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 291 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
+...+|+..+++. ...| +...+..+...+...|++++|...++++++.+|.. +..+..+..++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223355566555 3345 45688888888899999999999999999988764 558888899999999999998888
Q ss_pred HHHH
Q 043142 367 KLMI 370 (512)
Q Consensus 367 ~~m~ 370 (512)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=2.4e-08 Score=93.55 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHC----CCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----Ch
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDE----VQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SV 277 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 277 (512)
.+|+.+...|...|++++|+..|++.... +.| -..++..+...+.. |++++|...|++.++...-.. ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 35666667777777777777777765432 222 23567777788888 999999988888764321111 14
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch----
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RV---KPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN---- 345 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---- 345 (512)
.++..+...|.+.|++++|+..|++. .+ .++ ...+..+...+...|++++|...|++.+ ..|....+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 57778888899999999999988876 11 112 1256667777788899999999999999 88865432
Q ss_pred -HHHHHHHHHhccChhHHHH
Q 043142 346 -YVILSNIYARAANWEGVAK 364 (512)
Q Consensus 346 -~~~l~~~~~~~g~~~~a~~ 364 (512)
...++.++ ..|+.+.+.+
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 33445545 5666665555
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.1e-08 Score=104.89 Aligned_cols=159 Identities=10% Similarity=0.044 Sum_probs=126.8
Q ss_pred cCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 189 CGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
.|++++|.+.|++..+. +...|..+...|.+.|++++|++.|++..+..+.+...+..+..++...|++++|...++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999987753 367899999999999999999999999998877778899999999999999999999999
Q ss_pred HHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 043142 266 SMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLH---GHVKLAELALEKLIELE 339 (512)
Q Consensus 266 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~ 339 (512)
+..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 82 ~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99854 55 6788999999999999999999999987 3344 456888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 043142 340 PHDAGNYVILS 350 (512)
Q Consensus 340 p~~~~~~~~l~ 350 (512)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887766
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=3.3e-08 Score=86.75 Aligned_cols=126 Identities=10% Similarity=0.032 Sum_probs=97.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC
Q 043142 213 MITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSG 291 (512)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 291 (512)
+...|.+.|++++|+..|++..+..+.+...+..+..++...|++++|...|+++++. .| +...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHh
Confidence 7888899999999999999998887778888889999999999999999999998754 66 6778888888876655
Q ss_pred C--hHHHHHHHHhCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 292 R--LDEACDLIMQMRVKPDPG--VWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 292 ~--~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
. ...+...++... .|+.. .|..+..++...|++++|+..|++++++.|++
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 4 344566666653 34433 44445666777889999999999999999863
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=7.5e-08 Score=89.18 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=113.2
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 043142 105 ETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVD 184 (512)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 184 (512)
+.+...+..+...+.+.|++++|...|++..+.+| .+...+..+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----------------------------------~~~~a~~~la~ 159 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN----------------------------------QNGEIGLLLAE 159 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----------------------------------SCHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------cchhHHHHHHH
Confidence 33444445555555555666666665555555443 35566777888
Q ss_pred HHHhcCCHHHHHHHHHhcCCC--Cch-HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 043142 185 MYAKCGLVKVARNLFEQLREK--RVV-SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 185 ~y~~~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
.|.+.|++++|...|+++... +.. .+......+.+.++.++|+..|++.....+.+...+..+...+...|++++|.
T Consensus 160 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 160 TLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 888888888888888887653 322 22222334667777888888888888877777888888888888999999999
Q ss_pred HHHHHHHHhcCCCCC---hhHHHHHHHHHhccCChHHHHHHHHh
Q 043142 262 MFFESMVRDYHIDPS---VQHYTCMVDLLGHSGRLDEACDLIMQ 302 (512)
Q Consensus 262 ~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (512)
..|..+++. .|+ ...+..++..|...|+.++|...+++
T Consensus 240 ~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 240 ELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999888765 453 56778888888888888887777654
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=1.3e-06 Score=80.77 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChH--HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC------HH
Q 043142 190 GLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHST--KALDLFEKMKDEVQPDHITFVGVLSACSRGGL------FD 258 (512)
Q Consensus 190 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~------~~ 258 (512)
++++++.++++.+.+ ++-.+|+--...+.+.|.++ ++++.++++.+..+-|...|.--.....+.+. ++
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 677788887777764 34567777777777778777 88888888888877777777766666666665 78
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHH-HHHHHHhC-CC----CCCHhHHHHHHHHHHHcCCHHHHHHH
Q 043142 259 EGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDE-ACDLIMQM-RV----KPDPGVWGALLNSCKLHGHVKLAELA 331 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~A~~~ 331 (512)
++.+.+..++.. .| |...|+-+-..+.+.|+..+ +..+.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 888888888754 56 77788888778877777444 44566655 11 23556788888888888888888888
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 043142 332 LEKLIE-LEPHDAGNYVILS 350 (512)
Q Consensus 332 ~~~~~~-~~p~~~~~~~~l~ 350 (512)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 888886 6887766665443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=2.9e-08 Score=101.63 Aligned_cols=146 Identities=11% Similarity=-0.036 Sum_probs=109.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHH
Q 043142 154 IAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 154 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888999998887764 445778888999999999999999999987653 3578888899999999999999999
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc---CChHHHHHHHHhC
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS---GRLDEACDLIMQM 303 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m 303 (512)
++..+..+.+...+..+..++...|++++|...|++..+. .| +...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998877777888889999999999999999999998754 45 577888888999998 9999999998877
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=3.3e-08 Score=84.22 Aligned_cols=157 Identities=11% Similarity=-0.034 Sum_probs=118.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH-H-H
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALK-A-C 83 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~-~ 83 (512)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.. +..+.. . +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 455677788899999999999999864 36788999999999999999999999988664 34332 222221 1 1
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC---hhHHHHHHHHHhccCChHHH
Q 043142 84 SALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS---EATLVTVISASADIAALPQG 160 (512)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd---~~t~~~ll~~~~~~~~~~~a 160 (512)
...+....+.+.++..++.. +.+...+..+...|.+.|++++|...|+++.+.+|+ ...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334678888888775 456788888999999999999999999999988875 34677777788888888888
Q ss_pred HHHHHHHHH
Q 043142 161 RELHGFSWR 169 (512)
Q Consensus 161 ~~~~~~~~~ 169 (512)
...|+..+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776653
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=9.7e-08 Score=83.76 Aligned_cols=132 Identities=12% Similarity=-0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC
Q 043142 180 TALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGL 256 (512)
Q Consensus 180 ~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~ 256 (512)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..+.+..++..+..++...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 3455566666666666666665442 2345566666666666666666666666666555555555555555544332
Q ss_pred --HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHhHHHH
Q 043142 257 --FDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPGVWGA 314 (512)
Q Consensus 257 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 314 (512)
.+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 223333333332 11222222233344455556666666666655 45565544433
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=2e-08 Score=83.10 Aligned_cols=125 Identities=7% Similarity=-0.003 Sum_probs=73.7
Q ss_pred HHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCC
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSA 88 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 88 (512)
|..+|...|++++|+..|+...+. +...+-.+...|.+.|++++|++.|++.++. .| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344555666677777666665432 3445555666677777777777777776653 23 33456666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH-HHhhhhCCCC
Q 043142 89 IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQV-FDKILERDPS 140 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~pd 140 (512)
+++|...|+..++.. +.+..++..+...|.+.|++++|.+. +++..+.+|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 666666666666654 33555666666666666666555443 3556555554
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=4.8e-07 Score=79.54 Aligned_cols=161 Identities=12% Similarity=-0.010 Sum_probs=107.2
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhcCCCCChhHHH
Q 043142 206 RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG----LFDEGRMFFESMVRDYHIDPSVQHYT 281 (512)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~ 281 (512)
++.++..+...|...+++++|+..|++..+.+ +...+..|...|.. + ++++|..+|+...+. -+...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHHH
Confidence 34555555555666666666666666665543 33444455555555 5 677777777776432 2455666
Q ss_pred HHHHHHhc----cCChHHHHHHHHhC-CCCCC---HhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 282 CMVDLLGH----SGRLDEACDLIMQM-RVKPD---PGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 282 ~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.|..+|.. .+++++|+++|++. ...|+ ...+..|...|.. .+++++|...|+++.+. |.++.++..|
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 66666666 67778888877776 33332 5677777777777 77888888888888877 5556677788
Q ss_pred HHHHHhc-c-----ChhHHHHHHHHHHhCCC
Q 043142 350 SNIYARA-A-----NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 350 ~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 374 (512)
..+|... | ++++|...+++..+.|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888654 3 78888888888877664
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=3e-08 Score=81.81 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=87.9
Q ss_pred CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 043142 272 HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348 (512)
Q Consensus 272 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 348 (512)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4566 5667778888889999999999999887 3445 45689999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCC
Q 043142 349 LSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=3e-07 Score=81.69 Aligned_cols=69 Identities=13% Similarity=-0.006 Sum_probs=52.8
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 74 FTFPFALKACSALSAIEEGRRIHEDVIRNKWET--DVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 74 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
..+..+...+...|++++|...|+.+++..... ....+..+..+|.+.|++++|+..|++..+..|+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345556667888899999999999988864221 135677788889999999999999999988887653
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=6.5e-08 Score=90.60 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=128.1
Q ss_pred cCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCC----C--CCHHHHHHHHHHHhcCCCHHHHHH
Q 043142 189 CGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEV----Q--PDHITFVGVLSACSRGGLFDEGRM 262 (512)
Q Consensus 189 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--p~~~t~~~ll~a~~~~g~~~~a~~ 262 (512)
.++++.|...|... ...|...|++++|...|.+..... . .-..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46777777776553 456777788888888887765432 1 123578888889999999999999
Q ss_pred HHHHHHHhcCC--CC--ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC---CC----HhHHHHHHHHHHHcCCHHHHHH
Q 043142 263 FFESMVRDYHI--DP--SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK---PD----PGVWGALLNSCKLHGHVKLAEL 330 (512)
Q Consensus 263 ~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p~----~~~~~~ll~~~~~~g~~~~A~~ 330 (512)
.|++.++.+.- .| ...++..+...|.+ |++++|+..+++. .+. .+ ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987654211 12 24577888889988 9999999999876 111 11 3478888999999999999999
Q ss_pred HHHHHHhcCCCCC------chHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 331 ALEKLIELEPHDA------GNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 331 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
.|+++++..|.+. ..+..++..+...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998765432 256667778888899999999999887
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=1.1e-06 Score=81.52 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHhHHCCC--CCHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHH
Q 043142 212 AMITGYAMHGHSTKALDLFEKMKDEVQ--PDHI----TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYT 281 (512)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 281 (512)
..+..+...|++++|..++++..+... |+.. .+..+...+...+++++|...|+.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888889999999888876544 3322 2334666777788999999999988753221223 23688
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-----C---CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCchH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQMR-----V---KPDP-GVWGALLNSCKLHGHVKLAELALEKLIELEPH------DAGNY 346 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~-----~---~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~ 346 (512)
.+...|...|++++|+..++++- . .+.. .++..+...|...|++++|...++++++..+. -+.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999988887761 1 1222 27888999999999999999999999876432 25688
Q ss_pred HHHHHHHHhccC-hhHHHHHHHHHHh
Q 043142 347 VILSNIYARAAN-WEGVAKLRKLMID 371 (512)
Q Consensus 347 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 371 (512)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887753
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=9.8e-07 Score=77.51 Aligned_cols=168 Identities=13% Similarity=0.014 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccC----ChHHHHHHHHHHH
Q 043142 93 RRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIA----ALPQGRELHGFSW 168 (512)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 168 (512)
.+.|.+..+.| ++..+..|...|...+++++|++.|++..+.+ +...+..+...+.. + +.++|...+....
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 34444444432 34444445555555555555555555554432 33344444444444 3 4555555555555
Q ss_pred HcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----chHHHHHHHHHHH----cCChHHHHHHHHHhHH
Q 043142 169 RHRFELNVKVKTALVDMYAK----CGLVKVARNLFEQLREKR-----VVSWNAMITGYAM----HGHSTKALDLFEKMKD 235 (512)
Q Consensus 169 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 235 (512)
+.| +...+..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .++.++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 443 34455556666655 666777777776665543 3566666666666 5666777777776665
Q ss_pred CCCCCHHHHHHHHHHHhcC------CCHHHHHHHHHHHHH
Q 043142 236 EVQPDHITFVGVLSACSRG------GLFDEGRMFFESMVR 269 (512)
Q Consensus 236 ~~~p~~~t~~~ll~a~~~~------g~~~~a~~~~~~~~~ 269 (512)
. .++...+..|...|... .++++|...|+...+
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 12222344444444432 266777777766653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=2.8e-07 Score=80.89 Aligned_cols=132 Identities=9% Similarity=-0.077 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
..+..+...|.+.|++++|.+.|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455667778888999999999998888888889999999999999999999999887753 224557778888888899
Q ss_pred ChHHHHHHHHHHHHhCCCCC----------------hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 88 AIEEGRRIHEDVIRNKWETD----------------VFVGAALIDMYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
++++|.+.++..++.. +.+ ..++..+...|.+.|++++|...|++..+.+|+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999998888754 222 2677788888888899999998888888887754
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=1.4e-06 Score=86.93 Aligned_cols=168 Identities=10% Similarity=-0.055 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 193 KVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 193 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
+.+..+|+++.. .....|...+.-+.+.|+.++|..+|++.... + +...+.. ++......++ +++.+.+
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~---~y~~~~e~~~---~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL---YYGLVMDEEA---VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH---HHHHHTTCTH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH---HHHhhcchhH---HHHHHHH
Confidence 345566666543 23566777777777788888888888888777 4 3222211 1111111111 1222222
Q ss_pred hcC--------CCC---ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC--HhHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 043142 270 DYH--------IDP---SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPD--PGVWGALLNSCK-LHGHVKLAELALEKL 335 (512)
Q Consensus 270 ~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~-~~g~~~~A~~~~~~~ 335 (512)
.+- ..+ ....|...+..+.+.+..+.|..+|++.. .|. ...|......-. ..++.+.|..+|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 210 001 12456666777777788888888888872 232 233332221112 233688899999988
Q ss_pred HhcCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 336 IELEPHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 336 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
++..|+++..+...++...+.|+.+.|+.+|++.
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8877877776677777778888888888888886
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=3.7e-07 Score=80.09 Aligned_cols=145 Identities=12% Similarity=-0.056 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++.....+.+...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 44566777788888888888888877777788888888888888888888888887776666777778888888888888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 259 EGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
+|...|+...+. .|+.... .+...| +...|+. ..|..+...+...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLI-----DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEE-----ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHH-----HHHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888887643 2321100 000000 0123333 4777888888899999999999999999
Q ss_pred cCCCC
Q 043142 338 LEPHD 342 (512)
Q Consensus 338 ~~p~~ 342 (512)
..|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88865
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=4.4e-08 Score=90.45 Aligned_cols=192 Identities=8% Similarity=-0.064 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
+...+..+...|.+.|++++|...|+...+ .+...|..+...|.+.|++++|+..+++..+..+.+...+..+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566677777788888888888877542 34567777888888888888888888888776666777788888888
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAEL 330 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~ 330 (512)
...|++++|...|+...+. .|+ ...+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 8888888888888877643 331 1111112222211111111111 1222223333333333 333 3688999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhc-cChhHHHHHHHHHHhC
Q 043142 331 ALEKLIELEPHDAGNYVILSNIYARA-ANWEGVAKLRKLMIDR 372 (512)
Q Consensus 331 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 372 (512)
.++++++.+|.+......+...+.+. +++++|.++|....+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998776666776667666 7788999999887654
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=7e-06 Score=81.85 Aligned_cols=348 Identities=11% Similarity=0.001 Sum_probs=215.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCC--CCchHHHHHHHHHHhcCC-chHHHHHHHHHHHC-CCCC-CcchHHHHHHH
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQ--RNLFLWNVLIRAYAWNGP-YEVAIELYYRLLEI-GLVP-DNFTFPFALKA 82 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~ 82 (512)
.+|...+..|-. |+++.|..+|++... |++..|...+....+.+. .+....+|+..+.. |..| +...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 466777777765 889999999998654 799999999987777663 45677788887654 5444 34456666655
Q ss_pred Hh----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------CCChHHHHHHHHhhhhCC--CChhH
Q 043142 83 CS----ALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK-------------CSCVVNARQVFDKILERD--PSEAT 143 (512)
Q Consensus 83 ~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~~--pd~~t 143 (512)
+. ..++++.+..+|+..+......-..+|......-.. .+.+..|..+++.+...- .+...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 245688899999999874221112233322221111 122334444444443211 12224
Q ss_pred HHHHHHHHhcc--CC-----hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-chHHHHHH
Q 043142 144 LVTVISASADI--AA-----LPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE-KR-VVSWNAMI 214 (512)
Q Consensus 144 ~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~-~~~~~~li 214 (512)
|...+.--... +- .+.+..+|+.++... +.+..+|...+..+.+.|+.+.|..+|++... |. ...|.
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~--- 250 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL--- 250 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH---
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH---
Confidence 44444332221 11 234677888888754 55678888888888999999999999987543 22 22232
Q ss_pred HHHHHcCChHHHHHHHHHhHHCC-----------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 043142 215 TGYAMHGHSTKALDLFEKMKDEV-----------Q--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYT 281 (512)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~~-----------~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 281 (512)
.|+...+.++. ++.+.+.- . .....|...+....+.+.++.|..+|+.. +..+ ++...|.
T Consensus 251 -~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i 323 (493)
T 2uy1_A 251 -YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFI 323 (493)
T ss_dssp -HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHH
T ss_pred -HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHH
Confidence 23332222222 22222110 1 12245666667666778899999999988 3322 2444554
Q ss_pred HHHHHHhccC-ChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 282 CMVDLLGHSG-RLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 282 ~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
..+.+-.+.+ +.+.|..+|+.. ..-| +...|...+.-....|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 4333333334 699999999876 1123 34466777777788999999999999982 345677788887788899
Q ss_pred hhHHHHHHHHHHh
Q 043142 359 WEGVAKLRKLMID 371 (512)
Q Consensus 359 ~~~a~~~~~~m~~ 371 (512)
.+.+.++++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=6.5e-06 Score=76.11 Aligned_cols=216 Identities=8% Similarity=0.030 Sum_probs=137.7
Q ss_pred HhcCCc-hHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hh
Q 043142 49 AWNGPY-EVAIELYYRLLEIGLVPDNF-TFPFALKACSALS--AIEEGRRIHEDVIRNKWETDVFVGAALIDMY----AK 120 (512)
Q Consensus 49 ~~~g~~-~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~ 120 (512)
.+.|.+ ++|+++++.++.. .|+.. .|+.--..+...+ +++++++.+..++... +-+..+|+.--..+ .+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 344444 5788888888774 45544 4666666677777 8888888888888775 44566666555555 45
Q ss_pred C---CChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChH--HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---
Q 043142 121 C---SCVVNARQVFDKILERDP-SEATLVTVISASADIAALP--QGRELHGFSWRHRFELNVKVKTALVDMYAKCGL--- 191 (512)
Q Consensus 121 ~---g~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~--- 191 (512)
. +++++++.+++++.+.+| +..+|+.-.-.....+.++ ++.+.++.+++.. +.|...|+--...+.+.|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 5 678888888888888777 4456666655666666666 7777777777664 3455566655555555554
Q ss_pred ---HHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHH-HHHHHHHhHHCC---CCCHHHHHHHHHHHhcCCCHHHHH
Q 043142 192 ---VKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTK-ALDLFEKMKDEV---QPDHITFVGVLSACSRGGLFDEGR 261 (512)
Q Consensus 192 ---~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~---~p~~~t~~~ll~a~~~~g~~~~a~ 261 (512)
++++.+.++.+.. .|...|+-+-..+.+.|+..+ +.++..+....+ +.+...+..+..++.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 6666666665442 345666666666666665433 344555544332 345566666666666666667777
Q ss_pred HHHHHHH
Q 043142 262 MFFESMV 268 (512)
Q Consensus 262 ~~~~~~~ 268 (512)
++++.+.
T Consensus 279 ~~~~~l~ 285 (306)
T 3dra_A 279 TVYDLLK 285 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666664
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.5e-07 Score=75.03 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSC 319 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 319 (512)
.+......+.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445556666666666666666666533 34 4556666666666666666666666655 2333 344677777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
...|++++|.+.|+++++++|.++.++..|..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777777777777766655543
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=9e-07 Score=82.11 Aligned_cols=163 Identities=10% Similarity=-0.008 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--CCC--hh
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDH------ITFVGVLSACSRGGLFDEGRMFFESMVRDYHI--DPS--VQ 278 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 278 (512)
.+...+..+...|++++|++.+.+..+...... ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556677788888888888877766544211 22334555667788888888888887643111 111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CC
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM----RVKPD-----PGVWGALLNSCKLHGHVKLAELALEKLIELEPH------DA 343 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 343 (512)
+++.+...|...|++++|+..+++. ...|+ ..++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888899999888888765 11222 247888888999999999999999999876421 14
Q ss_pred chHHHHHHHHHhccChhHH-HHHHHHHHh
Q 043142 344 GNYVILSNIYARAANWEGV-AKLRKLMID 371 (512)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 371 (512)
.+|..++..|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777776543
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=1.7e-07 Score=77.29 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcc
Q 043142 8 VLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSAL 86 (512)
Q Consensus 8 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 86 (512)
.+.+.|.+++...+.+.+|++ +.+.+...|..+...+.+.|++++|+..|++..... | +...|..+..++...
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINA----IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCC----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 455667777766666555432 122356678888888888888888888888887753 4 455677788888888
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 87 SAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
|++++|...|++.++.. |.++..|..+..+|.+.|++++|...|++..+..|+..
T Consensus 84 g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888876 45677788888888888888888888888888777653
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=7.3e-08 Score=79.42 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=84.1
Q ss_pred CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 043142 272 HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVI 348 (512)
Q Consensus 272 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 348 (512)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4456 5566777888888889999998888876 3344 56688888888999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCC
Q 043142 349 LSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
+..+|...|++++|.+.|++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998877643
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=1.5e-08 Score=96.11 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467778888888888888888888777 3344 45688899999999999999999999999999999999999999999
Q ss_pred hccChhHH-HHHHHHHHh
Q 043142 355 RAANWEGV-AKLRKLMID 371 (512)
Q Consensus 355 ~~g~~~~a-~~~~~~m~~ 371 (512)
+.|++++| ...++.|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999998 456666643
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=7.1e-07 Score=74.55 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNS 318 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 318 (512)
..+..+...+...|++++|...|+...+. .| +...+..+...+...|++++|...+++. ...| +...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666777777777777777643 33 5666777777777777777777777665 2233 45578888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhccChhHHHHHHHHHHh
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSN--IYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 371 (512)
+...|++++|...++++++..|.++..+..+.. .+...|++++|.+.++...+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877754444 47888999999999887653
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=8.5e-07 Score=69.79 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHhHHHHHHHH
Q 043142 241 HITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVK-PDPGVWGALLNS 318 (512)
Q Consensus 241 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~ 318 (512)
...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|..+++++ ... .+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3455666666777777777777777776431 224566667777777777777777777666 222 345577788888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAA 357 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 357 (512)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888999999999888888888877777777665543
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=2.7e-05 Score=72.82 Aligned_cols=215 Identities=13% Similarity=0.043 Sum_probs=123.6
Q ss_pred HHHHHHHHhhhhCCCChhH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 043142 125 VNARQVFDKILERDPSEAT-LVTVISASADIA-ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC-G-LVKVARNLFE 200 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~ 200 (512)
++|+++++++...+|+..| |+.--..+...+ .++++...++.+++.. +-+..+|+.-...+.+. + +++++.+.++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4455555555555554332 333333333344 3555555555555443 33445555544444444 5 6778888888
Q ss_pred hcCCCC---chHHHHHHHHHHHcCChH--------HHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC-------HHHHHH
Q 043142 201 QLREKR---VVSWNAMITGYAMHGHST--------KALDLFEKMKDEVQPDHITFVGVLSACSRGGL-------FDEGRM 262 (512)
Q Consensus 201 ~m~~~~---~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~-------~~~a~~ 262 (512)
.+.+.+ -.+|+--...+.+.|.++ ++++.++++.+..+-|...|+--...+.+.+. ++++.+
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe 229 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI 229 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 877654 456666555555555555 88888898888877788888877777777775 678888
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCCh--------------------HHHHHHHHhC-CC-------CCCHhHHH
Q 043142 263 FFESMVRDYHIDP-SVQHYTCMVDLLGHSGRL--------------------DEACDLIMQM-RV-------KPDPGVWG 313 (512)
Q Consensus 263 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~-------~p~~~~~~ 313 (512)
++..++.. .| |...|+-+-..+.+.|+. .+..++..++ .. .++...+.
T Consensus 230 ~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 230 YILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 88877744 56 677777766666666553 2222333222 11 13444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hcCCCCC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLI-ELEPHDA 343 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~~ 343 (512)
.|...|...|+.++|.++++.+. +.+|-..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 55566666666666666666654 3445433
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.1e-06 Score=70.01 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
...|......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|.+.++..++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456677778888888888888888877643 1245567777778888888888888888888775 4567778888888
Q ss_pred HHhCCChHHHHHHHHhhhhCCCChh
Q 043142 118 YAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
|...|++++|++.|++..+.+|+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 8888888888888888888777544
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=8.5e-07 Score=70.85 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 316 (512)
+...+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|+..+++. ...| +...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344556666666666777777777666652 234 5566666666777777777777776665 2223 455777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAAN 358 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 358 (512)
..+...|++++|.+.++++++.+|.+...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888889999999998888888888888888877776653
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=1.1e-06 Score=69.80 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 316 (512)
+...+..+...+...|++++|...++...+. .| +...+..+...+...|++++|...+++. ...| +...|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4455666677777777888888777777644 33 5667777777778888888888877766 2233 456788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANW 359 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 359 (512)
..+...|++++|...++++++..|.++..+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999998888888888888887765
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=1.9e-07 Score=76.88 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=80.8
Q ss_pred HHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC
Q 043142 230 FEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP 307 (512)
Q Consensus 230 ~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 307 (512)
|++.....+.+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..|++. ...|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 33333333334455666677777778888888888777643 45 6667777777788888888888887776 3334
Q ss_pred -CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 308 -DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 308 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
+...|..+..++...|++++|...|+++++..|.++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 345777888888889999999999999998888776543
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=3.4e-07 Score=84.41 Aligned_cols=47 Identities=4% Similarity=-0.140 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc-CChHHHHHHHHhC
Q 043142 254 GGLFDEGRMFFESMVRDYHIDPS-VQHYTCMVDLLGHS-GRLDEACDLIMQM 303 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m 303 (512)
.|+.++|.+.++... ...|+ ......+...+.+. +.+++|.++|.+.
T Consensus 148 ~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566665555554 23443 22223333334443 4566666666665
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=2.5e-05 Score=72.28 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=83.2
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChh-------HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hHHHHH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEA-------TLVTVISASADIAALPQGRELHGFSWRHRFE-LN----VKVKTA 181 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~-------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 181 (512)
.+..+.+.|++++|.+.+++..+..+... .+..+...+...+++++|...+..+++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776543221 1122444445556666666666666653221 11 224566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC------CC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCC----C-C-CHHHHH
Q 043142 182 LVDMYAKCGLVKVARNLFEQLRE------KR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEV----Q-P-DHITFV 245 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~~------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-p-~~~t~~ 245 (512)
+...|...|++++|...|+++.+ .+ ..+|..+...|...|++++|+..+++..+.. . + -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666655431 11 1345555555556666666665555543221 1 1 134455
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHH
Q 043142 246 GVLSACSRGGL-FDEGRMFFESMV 268 (512)
Q Consensus 246 ~ll~a~~~~g~-~~~a~~~~~~~~ 268 (512)
.+..++...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555555552 355555555443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=7.7e-07 Score=80.51 Aligned_cols=209 Identities=10% Similarity=-0.054 Sum_probs=101.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCCh
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFVGAAL-------IDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAAL 157 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~ 157 (512)
..++...|.+.|.++.+.. +.....|+.+ ...+.+.++..+++..+.+-.+..|+......-| .|-+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~-----~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI-----GGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC-----CTTT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-----CCcc
Confidence 4577777777777777765 4456666666 3445555555555555555544433221100000 0000
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--chHHHHHHHHHHHcCChHHHHHHHHHhHH
Q 043142 158 PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR--VVSWNAMITGYAMHGHSTKALDLFEKMKD 235 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 235 (512)
.. ++.-+..-..+.-.+..++...|++++|.++|+.+...+ ......+...+.+.+++++|+..|+....
T Consensus 92 ~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 92 GD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred cc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 00 000000012233344555556666666666666654322 12333444455666666666666654332
Q ss_pred CCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 043142 236 EVQP--DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD 308 (512)
Q Consensus 236 ~~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 308 (512)
...| ....+..+..++...|++++|+..|++.. .....|. .........++.+.|+.++|...|+++ ...|+
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2111 12244555666666666666666666664 2111142 224444555566666666666666665 23444
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=8.9e-07 Score=76.79 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=69.3
Q ss_pred hcCCHHHHHH---HHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHC----CC--CCHHHHHHHHHHHhcCCCHH
Q 043142 188 KCGLVKVARN---LFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDE----VQ--PDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 188 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--p~~~t~~~ll~a~~~~g~~~ 258 (512)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++.... +. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333222222345555555566666666666666555431 11 22344555555566666666
Q ss_pred HHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCH----hHHHHHHHHHHHcCCH
Q 043142 259 EGRMFFESMVRDYHIDP-----SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVKPDP----GVWGALLNSCKLHGHV 325 (512)
Q Consensus 259 ~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~----~~~~~ll~~~~~~g~~ 325 (512)
+|...+++..+...-.+ ....+..+...+...|++++|...+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543211111 1223444455555555555555555443 001111 1234444455555555
Q ss_pred HHHHHHHHHHHh
Q 043142 326 KLAELALEKLIE 337 (512)
Q Consensus 326 ~~A~~~~~~~~~ 337 (512)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=1.3e-07 Score=82.21 Aligned_cols=169 Identities=9% Similarity=0.035 Sum_probs=96.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCH
Q 043142 183 VDMYAKCGLVKVARNLFEQLREK---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLF 257 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~ 257 (512)
+......|++++|.+.++.-.+. ....|..+...+...|++++|+..|++.....+ |+.... . .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~---------~ 79 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I---------L 79 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H---------H
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h---------H
Confidence 33444455666665555433221 234555666666667777777777776665433 211000 0 0
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 258 DEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 258 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
..- -..+ ....+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++
T Consensus 80 ~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 0000 1246666777777888888888877766 2333 4568888889999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhccChhHHH-HHHHHHHhCC
Q 043142 336 IELEPHDAGNYVILSNIYARAANWEGVA-KLRKLMIDRG 373 (512)
Q Consensus 336 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 373 (512)
++.+|.++.++..+..++...++.+++. ..++.|...+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998888887776 5566655443
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=7.9e-07 Score=72.49 Aligned_cols=100 Identities=8% Similarity=-0.011 Sum_probs=79.8
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 273 IDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 445 4455666777788888888888888776 3344 455788888888888999999999999998888888888888
Q ss_pred HHHHHhccChhHHHHHHHHHHhC
Q 043142 350 SNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999888887654
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=3.7e-07 Score=74.50 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 316 (512)
+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3445555666777777788887777777643 44 5667777777777888888888777766 2334 344677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.++...|++++|...|+++++..|.++......
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888888888888888888888888776554443
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=1.3e-06 Score=74.06 Aligned_cols=126 Identities=6% Similarity=0.060 Sum_probs=95.5
Q ss_pred HHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCCh--
Q 043142 218 AMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDL-LGHSGRL-- 293 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~-- 293 (512)
...|++++|+..+++.....+.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888887776667778888888888889999999888888754 34 56677777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 294 DEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 294 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
++|...+++. ...| +...|..+...+...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888876 3344 355788888888999999999999999999988876543
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=1.2e-06 Score=67.50 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=80.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPH--DAGNYVILSN 351 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 351 (512)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556677777788888888888888776 2233 4567888888888899999999999999998888 8888888999
Q ss_pred HHHhc-cChhHHHHHHHHHHhCCC
Q 043142 352 IYARA-ANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 352 ~~~~~-g~~~~a~~~~~~m~~~g~ 374 (512)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999988876654
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=3.1e-06 Score=73.28 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=116.0
Q ss_pred HHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHhccCC
Q 043142 218 AMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDP-SVQHYTCMVDLLGHSGR 292 (512)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~ 292 (512)
...|++++|.+.++.+.. .+ ....++..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 33 566788889999999999999999999887522 1222 45678888999999999
Q ss_pred hHHHHHHHHhC-C---CCC-C----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcc
Q 043142 293 LDEACDLIMQM-R---VKP-D----PGVWGALLNSCKLHGHVKLAELALEKLIELE--PHD----AGNYVILSNIYARAA 357 (512)
Q Consensus 293 ~~~A~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g 357 (512)
+++|.+.+++. . ..+ + ...+..+...+...|++++|...+++.++.. ..+ ..++..+..+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999998876 1 122 2 2367788888999999999999999998753 222 224578899999999
Q ss_pred ChhHHHHHHHHHHh
Q 043142 358 NWEGVAKLRKLMID 371 (512)
Q Consensus 358 ~~~~a~~~~~~m~~ 371 (512)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988765
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=2.4e-06 Score=79.13 Aligned_cols=158 Identities=11% Similarity=-0.041 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C------chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC----CC--HHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQLREK---R------VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ----PD--HITFV 245 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----p~--~~t~~ 245 (512)
..+..+...|++++|.+.++...+. . ...+..+...+...|++++|+..|++...... +. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3455555666666666665543211 1 01223344455666677777777766654322 11 33566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HhHH
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPS-----VQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPD-PGVW 312 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 312 (512)
.+...|...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|+..+++. +.... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6677777777777777777766522111222 146666777777777777777777655 11111 3467
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 043142 313 GALLNSCKLHGHVKLA-ELALEKLIEL 338 (512)
Q Consensus 313 ~~ll~~~~~~g~~~~A-~~~~~~~~~~ 338 (512)
..+...+...|++++| ...+++++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7777788888888888 6667776653
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=1.9e-06 Score=77.94 Aligned_cols=136 Identities=13% Similarity=-0.029 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
Q 043142 210 WNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS--VQHYTCMVDLL 287 (512)
Q Consensus 210 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 287 (512)
+-.....+...|++++|.++|+.+...++ +......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p-~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGS-EHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 44566778889999999999998876555 3325555666888999999999999866421 1 121 23677788889
Q ss_pred hccCChHHHHHHHHhCC---CCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 288 GHSGRLDEACDLIMQMR---VKPD--PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.+.|++++|+..|++.. ..|. ...+.....++...|+.++|...|+++...+|. +..+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999999872 2143 236677778889999999999999999999987 5554444
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=5.8e-07 Score=76.30 Aligned_cols=120 Identities=10% Similarity=0.147 Sum_probs=100.7
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHHcCCH--
Q 043142 252 SRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNS-CKLHGHV-- 325 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~-- 325 (512)
...|++++|...++...+. .| +...+..+...|...|++++|...+++. ...| +...|..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4568889999999988755 45 6788999999999999999999999887 3334 55688888888 7789998
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 043142 326 KLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 374 (512)
++|...++++++.+|.++..+..++.+|...|++++|...+++..+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999887653
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=2.6e-05 Score=72.62 Aligned_cols=226 Identities=11% Similarity=0.037 Sum_probs=133.8
Q ss_pred hCCChH-HHHHHHHhhhhCCCChhH-HHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 120 KCSCVV-NARQVFDKILERDPSEAT-LVTVISASADIAA----------LPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 120 ~~g~~~-~A~~~~~~m~~~~pd~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
+.|.++ +|+++++.+...+|+..| |+.=-..+...+. ++++..+++.++... +-+..+|+--.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 445543 677777777777776554 3322222211111 456666666666653 445666666666666
Q ss_pred hcC--CHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCC-hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcC-------
Q 043142 188 KCG--LVKVARNLFEQLRE---KRVVSWNAMITGYAMHGH-STKALDLFEKMKDEVQPDHITFVGVLSACSRG------- 254 (512)
Q Consensus 188 ~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~------- 254 (512)
+.| .++++..+++.+.+ +|-.+|+--...+...|. ++++++.++++.+..+-|...|+-....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 666 47788888877764 345677776666677777 47888888888877776666666554444433
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc-----------CChHHHHHHHHhC-CCCCCHhHHHH
Q 043142 255 -------GLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS-----------GRLDEACDLIMQM-RVKPDPGVWGA 314 (512)
Q Consensus 255 -------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ 314 (512)
+.++++.+++...+.. .| |...|+-+-..+.+. +.++++++.++++ ...||. .|..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred cccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 3467777777777643 55 566666554444444 3456666666665 345554 3432
Q ss_pred HHHHH-----HHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 315 LLNSC-----KLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 315 ll~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+-.+. ...+..++....+.++.+++|....-|..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 22211 1245566777777777777776555554443
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=3.2e-06 Score=66.37 Aligned_cols=102 Identities=23% Similarity=0.213 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDM 117 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (512)
...|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566777777777777777777777776542 1234556666677777777777777777777664 4456667777777
Q ss_pred HHhCCChHHHHHHHHhhhhCCCCh
Q 043142 118 YAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
|.+.|++++|...|+++.+.+|+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCc
Confidence 777777777777777776666543
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=3.1e-06 Score=70.51 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLL 287 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 287 (512)
.|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...++...+. .| +...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHH
Confidence 34444555555555555555555555544444555555555566666666666666655533 23 445555556666
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHhHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 288 GHSGRLDEACDLIMQM-RVKP-DPGVWG--ALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
.+.|++++|...+++. ...| +...+. .+...+...|++++|...+.+..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666554 2222 222332 222235556666666666666543
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=5e-05 Score=70.99 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF-TFPFALKACSALS-AIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
++.+-....+.+..++|+++++.++.. .|+.. .|+.--..+...+ .++++.+.++.+++.. +-+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344334444556667899999999884 45544 4666666666777 5999999999998876 55777888877777
Q ss_pred HhC-C-ChHHHHHHHHhhhhCCC-ChhHHHHHHHHHhccCChH--------HHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 119 AKC-S-CVVNARQVFDKILERDP-SEATLVTVISASADIAALP--------QGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 119 ~~~-g-~~~~A~~~~~~m~~~~p-d~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
.+. + ++++++++++++.+.+| |..+|+.-.-...+.+.++ ++.+.+..+++.. +.|...|+-....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 776 6 88999999999999887 4455655444444444444 5666666666654 345556665555555
Q ss_pred hcCC-------HHHHHHHHHhcCC---CCchHHHHHHHHHHHcC
Q 043142 188 KCGL-------VKVARNLFEQLRE---KRVVSWNAMITGYAMHG 221 (512)
Q Consensus 188 ~~g~-------~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 221 (512)
+.+. ++++.+.+++... .|...|+-+-..+.+.|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 5554 3445554444331 23344544444444433
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=4.7e-06 Score=66.39 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=80.5
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.++..++.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55678888888888899999999888887643 1245567777778888888888888888888775 456777888888
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
.|.+.|++++|.+.|++..+.+|+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 8888888888888888887776643
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1e-06 Score=69.55 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677788899999999999887 3445 5568888889999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhCC
Q 043142 357 ANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 357 g~~~~a~~~~~~m~~~g 373 (512)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=5e-06 Score=65.87 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+...++.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34556666777777777777777777776542 1234456666666777777777777777776664 345666677777
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccC
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIA 155 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~ 155 (512)
.|.+.|++++|.+.|++..+.+|+ ...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 777777777777777777666553 233334444443333
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.3e-06 Score=66.97 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYAR 355 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 355 (512)
..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666677777777776665 2233 345777777777777777778888887777777777777777777777
Q ss_pred ccChhHHHHHHHHHHhC
Q 043142 356 AANWEGVAKLRKLMIDR 372 (512)
Q Consensus 356 ~g~~~~a~~~~~~m~~~ 372 (512)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888887777776654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=7.3e-06 Score=63.53 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSC 319 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 319 (512)
.+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++. ...| +...|..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4445555556666666666666666533 23 4555555666666666666666666554 2223 344666666677
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 043142 320 KLHGHVKLAELALEKLIELEPHDAGNYVILSN 351 (512)
Q Consensus 320 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 351 (512)
...|++++|...++++.+.+|.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77777777777777777777766655554443
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=3.6e-06 Score=79.71 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=56.3
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc----------------chHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----------------FTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
+...|..+...|.+.|++++|+..|++..... |+. ..|..+..++...|++++|...++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777777788888888888888777643 332 344444444555555555555555554
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+.. +.+...+..+..+|.+.|++++|+..|++..+.+|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 443 23444444455555555555555555555544444
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=4.8e-06 Score=69.60 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALL 316 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 316 (512)
+...+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|+..+++. ...|+ ...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455666777777888888888888887644 45 6677778888888888888888888776 33443 56888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 043142 317 NSCKLHGHVKLAELALEKLIELEPHDAGNYVIL 349 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 349 (512)
.++...|++++|...|+++++++|.++..+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 999999999999999999999999988765443
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=4.9e-06 Score=66.90 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5666777777777777777777777765 2333 3557778888888888888888888888888888888888888888
Q ss_pred HhccChhHHHHHHHHHHhC
Q 043142 354 ARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 354 ~~~g~~~~a~~~~~~m~~~ 372 (512)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887654
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=8.7e-07 Score=76.86 Aligned_cols=131 Identities=9% Similarity=-0.045 Sum_probs=74.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CC------------
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLV-PD------------ 72 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~------------ 72 (512)
+.+..+......|+++.|.+.|+.-.. .....|..+...+.+.|++++|+..|++....... |+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 344555566667888888888875433 24567888888999999999999999999874211 11
Q ss_pred --cchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 73 --NFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 73 --~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
...+..+..++...|++++|...+...++.. +.+...+..+..+|...|++++|.+.|++..+.+|+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 0345555555666666666666666666553 344555666666666666666666666666555553
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.35 E-value=3.6e-07 Score=90.55 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----------------hhHHHHHHHHHhccCChHHHHHHHHhC-C
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----------------VQHYTCMVDLLGHSGRLDEACDLIMQM-R 304 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 304 (512)
..+..+...+.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|+..+++. .
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34445555555566666666666655532 221 467888888999999999999998877 3
Q ss_pred CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH-HHHHHHh
Q 043142 305 VKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK-LRKLMID 371 (512)
Q Consensus 305 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 371 (512)
..| +...|..+..++...|++++|+..|+++++++|.+..++..+..++.+.|+++++.+ .++.|..
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 456899999999999999999999999999999999999999999999999998864 4555544
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.1e-05 Score=65.69 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHH
Q 043142 240 DHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWG 313 (512)
Q Consensus 240 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 313 (512)
+...+..+...+...|++++|...|+... ...|+ ...+..+...|.+.|++++|+..+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 44555566666666677777777776665 23454 456666666677777777777766655 2233 345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNI 352 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 352 (512)
.+...+...|++++|...++++++.+|.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 777777777888888888888887777776655555444
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=2.4e-06 Score=71.48 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4667888899999999999999999887 3445 5668999999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhCC
Q 043142 354 ARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 354 ~~~g~~~~a~~~~~~m~~~g 373 (512)
...|++++|...+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=8.4e-06 Score=64.58 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 456667777777888888888888777643 1234567777777777788888888887777765 44566777777778
Q ss_pred HhCCChHHHHHHHHhhhhCC
Q 043142 119 AKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~ 138 (512)
...|++++|...|++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888887777666
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=5.8e-06 Score=64.13 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999987 3334 56788999999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHhCC
Q 043142 355 RAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 355 ~~g~~~~a~~~~~~m~~~g 373 (512)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=4.6e-06 Score=64.07 Aligned_cols=102 Identities=19% Similarity=0.037 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWET--DVFVGAAL 114 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l 114 (512)
+...|..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.+++.++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 344455555555666666666666666554321 123345555555555566666666665555543 22 34555555
Q ss_pred HHHHHhC-CChHHHHHHHHhhhhCCCC
Q 043142 115 IDMYAKC-SCVVNARQVFDKILERDPS 140 (512)
Q Consensus 115 i~~~~~~-g~~~~A~~~~~~m~~~~pd 140 (512)
...|.+. |++++|.+.|.+....+|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 5566666 6666666666665555443
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=6.2e-06 Score=82.03 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 183 VDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 183 i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
...|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.+++..+..+.+..++..+..++...|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566677777777666542 2345666666666677777777777766666655556666666666666677777
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHH--HhccCChHHHHHHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDL--LGHSGRLDEACDLIM 301 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 301 (512)
|...|++..+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77766666543 33 23333334333 555666666666665
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=8.4e-06 Score=66.33 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILS 350 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 350 (512)
+...+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5678888999999999999999999987 56777 568888999999999999999999999999999999999999
Q ss_pred HHHHhccChhHHHHHHHHHHhCC
Q 043142 351 NIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999987654
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=2.7e-06 Score=67.74 Aligned_cols=89 Identities=7% Similarity=-0.020 Sum_probs=41.4
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHHHH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAG-------NYVILSNI 352 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~ 352 (512)
-+...+.+.|++++|++.|++. .+.|+ ...|..+..+|...|++++|++.++++++++|.+.. +|..+..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3444444444444444444443 22222 234444555555555555555555555554443322 33344444
Q ss_pred HHhccChhHHHHHHHHHH
Q 043142 353 YARAANWEGVAKLRKLMI 370 (512)
Q Consensus 353 ~~~~g~~~~a~~~~~~m~ 370 (512)
|...|++++|.+.|++..
T Consensus 93 ~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.4e-05 Score=78.38 Aligned_cols=188 Identities=9% Similarity=-0.034 Sum_probs=126.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC--------------------chHHHHHHHHHHHcCChHHHHHHHHHhHHCC--CCCH
Q 043142 184 DMYAKCGLVKVARNLFEQLREKR--------------------VVSWNAMITGYAMHGHSTKALDLFEKMKDEV--QPDH 241 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~ 241 (512)
..+.+.|++++|.+.|..+.+.+ ..++..+...|...|++++|.+.+.++.... .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34455666666666666543211 0246677888888888888888888875431 1222
Q ss_pred H----HHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-----C--CC
Q 043142 242 I----TFVGVLSACSRGGLFDEGRMFFESMVRDY---HIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-----R--VK 306 (512)
Q Consensus 242 ~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~ 306 (512)
. +.+.+...+...|+.+++..++....... +..+ ...++..|...|...|++++|..++++. + -+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 22333334456788888888887765421 2222 2457788889999999999999988776 1 12
Q ss_pred CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 307 PD-PGVWGALLNSCKLHGHVKLAELALEKLIELE---PHD----AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 307 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
|. ..++..++..|...|++++|..++++++... +.+ ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 32 2378888889999999999999999988653 222 23566677788888999999888876653
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=8.7e-06 Score=65.42 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGAL 315 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 315 (512)
.+...+..+...+...|++++|...|+..++. .| +...+..+...|...|++++|...+++. ...| +...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45566667777777777777777777777643 34 4667777777777777777777777766 2333 35577888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 043142 316 LNSCKLHGHVKLAELALEKLIELEPH 341 (512)
Q Consensus 316 l~~~~~~g~~~~A~~~~~~~~~~~p~ 341 (512)
...+...|++++|...++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888887765
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=1.2e-05 Score=63.97 Aligned_cols=103 Identities=15% Similarity=0.017 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC----hhHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD-NFTFPFALKACSALSAIEEGRRIHEDVIRNKW--ETD----VFVG 111 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~ 111 (512)
.+|..+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|++++|.+.+...++... .++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34566666777777777777777776663 233 34566666667777777777777776665431 111 1355
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 112 AALIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
..+...|...|++++|++.|++.....||..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 56666777777777777777777666565443
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=3.9e-06 Score=83.52 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=82.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCH
Q 043142 249 SACSRGGLFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHV 325 (512)
Q Consensus 249 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 325 (512)
..+.+.|++++|...|++.++. .| +...+..+..+|.+.|++++|++.+++. ...|+ ...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455667777777777777643 44 4667777777777777777777777766 33443 45777788888888888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhccChhHHHHHHH
Q 043142 326 KLAELALEKLIELEPHDAGNYVILSNI--YARAANWEGVAKLRK 367 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 367 (512)
++|++.++++++.+|.++..+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888888887777777766 777788888888776
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=0.00044 Score=67.56 Aligned_cols=159 Identities=9% Similarity=-0.085 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhhhCC---CCh----hHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-chHH
Q 043142 111 GAALIDMYAKCSCVVNARQVFDKILERD---PSE----ATLVTVISASADIAALPQGRELHGFSWRH----RFEL-NVKV 178 (512)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 178 (512)
+..|...|.+.|++++|.+.+.++.... ++. ...+.+-..+...|+.+.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3456666677777777776666654321 111 11222222334556677777776655432 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC----CC-----chHHHHHHHHHHHcCChHHHHHHHHHhHHCC--CCC-----HH
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLRE----KR-----VVSWNAMITGYAMHGHSTKALDLFEKMKDEV--QPD-----HI 242 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~-----~~ 242 (512)
+..|...|...|++++|..+++.... .+ +..|..++..|...|++++|..++++..... .++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 77788888888998888888876531 11 3578888888888999999988888765431 121 23
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVR 269 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 269 (512)
.+..+...+...+++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666677788899988888777654
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=9.7e-06 Score=64.32 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHD---AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+..+..++...|++++|...++++++..|++ +.++..++.+|...|++++|...++.+.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555555555544 33445555555555555555555555443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=1.2e-05 Score=63.72 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC----hhHHH
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKW--ETD----VFVGA 112 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 112 (512)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+...++... +++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776643 22344566666667777777777777777666531 111 55667
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHH
Q 043142 113 ALIDMYAKCSCVVNARQVFDKILERDPSEATLVT 146 (512)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ 146 (512)
.+...|.+.|++++|.+.|++..+.+|+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777888888888888777776665444333
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.2e-05 Score=63.22 Aligned_cols=98 Identities=10% Similarity=-0.163 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 043142 40 LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVP-DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMY 118 (512)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 118 (512)
.+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...+++.++.. +.+...+..+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4555666777888888888888887764 33 44566667777778888888888888877775 44566777777888
Q ss_pred HhCCChHHHHHHHHhhhhCCCC
Q 043142 119 AKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~~pd 140 (512)
.+.|++++|+..|++..+.+|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 8888888888888887776664
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=4.1e-05 Score=60.45 Aligned_cols=108 Identities=11% Similarity=0.004 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CC----CCC----HhHHH
Q 043142 243 TFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQM-RV----KPD----PGVWG 313 (512)
Q Consensus 243 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~ 313 (512)
.+..+...+...|++++|..+|+...+.. +.+...+..+...|.+.|++++|...+++. .. .++ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34444555555555566655555554331 124445555555566666666666655554 11 112 44666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
.+...+...|++++|...++++++..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 777777778888888888888877776 444444444433
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=4.1e-05 Score=60.56 Aligned_cols=100 Identities=15% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc----chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHH
Q 043142 41 WNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----FTFPFALKACSALSAIEEGRRIHEDVIRNKWETD---VFVGAA 113 (512)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 113 (512)
+..+...+.+.|++++|...|++..... |+. ..+..+..++...|++++|...++.+++.. +.+ ..++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3345566777888888888888877643 333 256666677777888888888888877764 223 455667
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 114 LIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
+...|.+.|++++|...|+++.+..|+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 777788888888888888888777765443
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=1.7e-05 Score=75.95 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY 353 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 353 (512)
+...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888888999999999999999887 45554 558888999999999999999999999999999998999999998
Q ss_pred HhccChhHHHHH
Q 043142 354 ARAANWEGVAKL 365 (512)
Q Consensus 354 ~~~g~~~~a~~~ 365 (512)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=1.3e-05 Score=65.58 Aligned_cols=62 Identities=6% Similarity=-0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIEL-------EPHDAGNY----VILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
.|..+..++...|++++|+..+++++++ +|++...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888899999999999999999988 99988888 99999999999999999999988754
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=3.5e-06 Score=65.98 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=45.9
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHH
Q 043142 290 SGRLDEACDLIMQM-RV---KPD-PGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAK 364 (512)
Q Consensus 290 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 364 (512)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|.++.++..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555554 22 132 22555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 043142 365 LRKLMID 371 (512)
Q Consensus 365 ~~~~m~~ 371 (512)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00067 Score=63.08 Aligned_cols=217 Identities=12% Similarity=0.043 Sum_probs=151.8
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CCchHHHHHHHHHH
Q 043142 153 DIAAL-PQGRELHGFSWRHRFELNVKVKTALVDMYAKCGL----------VKVARNLFEQLRE---KRVVSWNAMITGYA 218 (512)
Q Consensus 153 ~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~m~~---~~~~~~~~li~~~~ 218 (512)
+.|.+ ++|....+.++... |-+..+|+.--..+...+. ++++...++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34554 47888888888765 3344556544333333332 6788888888764 45678888877788
Q ss_pred HcCC--hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc----
Q 043142 219 MHGH--STKALDLFEKMKDEVQPDHITFVGVLSACSRGGL-FDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHS---- 290 (512)
Q Consensus 219 ~~g~--~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 290 (512)
..++ +++++++++++.+..+-|...|+--.-.+...|. ++++.+.+..+++. .| |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcc
Confidence 8784 7999999999999888788888777777777887 58999999999865 45 677777666655554
Q ss_pred ----------CChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 291 ----------GRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLH-----------GHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 291 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
+.++++++++.+. ...| |...|+-+-..+... +.++++++.++++++.+|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888776 3344 555776555544444 4578999999999999998743333
Q ss_pred HHHHH---HHhccChhHHHHHHHHHHhCC
Q 043142 348 ILSNI---YARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 348 ~l~~~---~~~~g~~~~a~~~~~~m~~~g 373 (512)
.++.. ....|..+++...+.++.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 33222 224577778888888887654
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=3.1e-05 Score=63.68 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCc
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM----RVKPD----PGVWGALLNSCKLHGHVKLAELALEKLIELEP------HDAG 344 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 344 (512)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555544443 00011 23556666667777777777777777765421 1234
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 345 NYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666778888888888888888877654
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.7e-05 Score=64.11 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HhH
Q 043142 244 FVGVLSACSRGGLFDEGRMFFESMVRDYHIDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM-------RVKPD-PGV 311 (512)
Q Consensus 244 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~ 311 (512)
+..+...+...|++++|..+++...+...-.+ ....+..+...+...|++++|.+.+++. +..+. ...
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 33444444444555555544444432210001 1234444555555555555555555443 10111 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 043142 312 WGALLNSCKLHGHVKLAELALEKLIELE 339 (512)
Q Consensus 312 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 339 (512)
+..+...+...|++++|.+.++++++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6667777778888888888888777643
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=1.7e-05 Score=65.99 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 310 GVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 310 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
..|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4777788888888888888888888888888888888888888888888888888888876643
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=9.9e-06 Score=76.70 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLL 287 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (512)
..|..+...+.+.|++++|+..|++.....+ +... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3455566666677777777777777654332 2211 122233333222110 12667777888
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhccChhHHHH
Q 043142 288 GHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIY-ARAANWEGVAK 364 (512)
Q Consensus 288 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~ 364 (512)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..|..+. ...+..+.+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776 3344 4557888888888888888888888888888888877777777663 34456667777
Q ss_pred HHHHHHhCC
Q 043142 365 LRKLMIDRG 373 (512)
Q Consensus 365 ~~~~m~~~g 373 (512)
+++.|.+..
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 777776543
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=3.1e-05 Score=76.62 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=98.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCCHh-HHH
Q 043142 250 ACSRGGLFDEGRMFFESMVRDYH--IDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM---------RVKPDPG-VWG 313 (512)
Q Consensus 250 a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~ 313 (512)
.+...|++++|+.++++..+... +.| ...+++.|...|...|++++|+.++++. +..|++. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999998887765422 122 2467888999999999999999988776 2446555 899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 043142 314 ALLNSCKLHGHVKLAELALEKLIE-----LEPHDAG---NYVILSNIYARAANWEGVAKLRKLMIDRG 373 (512)
Q Consensus 314 ~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 373 (512)
.|...|...|++++|+.+++++++ ++|+.|. +...|..++...+++++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 3566544 44577888889999999999999998754
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=5.7e-06 Score=64.71 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHH
Q 043142 254 GGLFDEGRMFFESMVRDYHI-DP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
.|++++|+..|++.++. +. .| +...+..+...|.+.|++++|+..|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777632 10 24 4566777777788888888888877776 3334 3457777888888888888888
Q ss_pred HHHHHHHhcCCCCCch
Q 043142 330 LALEKLIELEPHDAGN 345 (512)
Q Consensus 330 ~~~~~~~~~~p~~~~~ 345 (512)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877643
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=1.6e-05 Score=64.90 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC--------CCCCCHh-HH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 279 HYTCMVDLLGHSGRLDEACDLIMQM--------RVKPDPG-VW----GALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
.|..+..++.+.|++++|+..+++. .+.|+.. .| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555555443 2377765 88 899999999999999999999999999987654
Q ss_pred HH
Q 043142 346 YV 347 (512)
Q Consensus 346 ~~ 347 (512)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00029 Score=71.31 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCC----------hHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC-
Q 043142 190 GLVKVARNLFEQLREK---RVVSWNAMITGYAMHGH----------STKALDLFEKMKDEVQPDHITFVGVLSACSRGG- 255 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g- 255 (512)
...++|.+.++.+.+. +...|+.--..+...|+ ++++++.++++....+-+..+|..-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 3446778888777643 34667776666666666 889999999998887777777877777778888
Q ss_pred -CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC-ChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHc--------
Q 043142 256 -LFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSG-RLDEACDLIMQM-RVKP-DPGVWGALLNSCKLH-------- 322 (512)
Q Consensus 256 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-------- 322 (512)
+++++...++++.+. .| +...|+.-...+.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999854 55 6777777777777888 888999998887 4444 455888777776653
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhH
Q 043142 323 ------GHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEG 361 (512)
Q Consensus 323 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 361 (512)
+.++++.+.+.++++.+|.+..+|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999998888555
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=6.8e-05 Score=62.28 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHC-------CC---------CCC-cchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 38 LFLWNVLIRAYAWNGPYEVAIELYYRLLEI-------GL---------VPD-NFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
+..|......+.+.|++++|+..|.+.+.. .- .|. ...|..+..++...|++++|...+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667777888888888888888887653 00 111 2355666666677777777777777777
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
+.. +.+...|..+..+|...|++++|...|++..+.+|+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 664 44566667777777777777777777777776666543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=3.6e-05 Score=72.83 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
...+..+...|.+.|++++|...|++..+.+.... .+...++.+++...+. ...|..+..++.+.|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK---------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH---------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH---------HHHHHHHHHHHHHcC
Confidence 45677888999999999999999998654322111 1222333344433221 136777888889999
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHH-HHHcCCHHHHHHH
Q 043142 256 LFDEGRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNS-CKLHGHVKLAELA 331 (512)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~-~~~~g~~~~A~~~ 331 (512)
++++|...++..++. .| +...|..+..+|...|++++|+..|++. .+.|+.. .+..|... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988754 55 6788888999999999999999999887 4556544 45444444 2445677888889
Q ss_pred HHHHHhcCCCCC
Q 043142 332 LEKLIELEPHDA 343 (512)
Q Consensus 332 ~~~~~~~~p~~~ 343 (512)
|+++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887654
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=9.8e-05 Score=72.97 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=71.1
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+...|..+...|.+.|++++|+..|++.+.. .|+...+ .-+...++- +....+|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKASE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 3456777778888888888888888887763 2332100 000000000 001234445555
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCC-hhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPS-EATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVA 195 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 195 (512)
+|.+.|++++|+..|++..+.+|+ ...|..+..++...|++++|...|..+++.. +.+..++..+..++.+.|+.++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555442 2344455555555555555555555555432 22344555666666666666655
Q ss_pred H
Q 043142 196 R 196 (512)
Q Consensus 196 ~ 196 (512)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=0.00015 Score=69.38 Aligned_cols=91 Identities=5% Similarity=-0.089 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----------------C---CchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLRE----------------K---RVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
.+..+...|.+.|++++|.+.|++..+ . +...|+.+...|.+.|++++|+..+++..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 355566667777777777777665432 0 123344444444444444444444444444333
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.+...+..+..++...|++++|...|++..
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=0.00012 Score=55.26 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=58.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 308 DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+...|..+...+...|++++|+..|+++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45688889999999999999999999999999999999999999999999999999999887654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=7.1e-05 Score=57.29 Aligned_cols=91 Identities=11% Similarity=-0.038 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD------AGNYV 347 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 347 (512)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++.+|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456667777888888888888888776 3334 45688888889999999999999999999999987 56666
Q ss_pred HHHHHHHhccChhHHHHHH
Q 043142 348 ILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~ 366 (512)
.+..++...|+++.|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777666655444
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=8.7e-05 Score=57.48 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=58.9
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 295 EACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 295 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+|++.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555544 3344 44577778888888888888888888888888888888888888888888888888888877653
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00017 Score=52.72 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYA 354 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 354 (512)
...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777777778888888777766 2233 45577788888888889999999999988888888888887777776
Q ss_pred hcc
Q 043142 355 RAA 357 (512)
Q Consensus 355 ~~g 357 (512)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=5.8e-05 Score=57.78 Aligned_cols=93 Identities=6% Similarity=0.048 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-------hhHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPS-------VQHY 280 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~ 280 (512)
..|..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...++..+ .+.|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHHHH
Confidence 4556666677777777777777777776666666777777777777777777777777776 34554 3445
Q ss_pred HHHHHHHhccCChHHHHHHHHhC
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m 303 (512)
..+..++...|+.++|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 55555555555555555544443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00039 Score=68.73 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
..+++.|...|...|++++|+.+|+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4566777777777777777777664
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=6.9e-05 Score=61.06 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=60.9
Q ss_pred ccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 043142 289 HSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGH----------VKLAELALEKLIELEPHDAGNYVILSNIYARA 356 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 356 (512)
|.+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+..+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555444 2233 33355545555544443 57999999999999999999999999999887
Q ss_pred c-----------ChhHHHHHHHHHHhCCC
Q 043142 357 A-----------NWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 357 g-----------~~~~a~~~~~~m~~~g~ 374 (512)
| ++++|.+.|++..+.+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999887653
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.00063 Score=50.25 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 307 PDPGVWGALLNSCKLHGH---VKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
+|...+..+..++...++ .++|..+++++++.+|.++.+...+...+...|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777765555 799999999999999999999999999999999999999999999887654
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.00027 Score=54.59 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043142 260 GRMFFESMVRDYHIDP-SVQHYTCMVDLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLI 336 (512)
Q Consensus 260 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 336 (512)
|...|+...+ ..| +...+..+...|.+.|++++|+..+++. ...| +...|..+...+...|++++|...|++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555542 344 4566666667777777777777777665 2233 34467777777777888888888888777
Q ss_pred hcCCC
Q 043142 337 ELEPH 341 (512)
Q Consensus 337 ~~~p~ 341 (512)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76653
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.45 E-value=0.011 Score=59.75 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=73.0
Q ss_pred hHHHHHHHHhhhhCCCCh-hHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHH
Q 043142 124 VVNARQVFDKILERDPSE-ATLVTVISASADIA--ALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCG-LVKVARNLF 199 (512)
Q Consensus 124 ~~~A~~~~~~m~~~~pd~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~ 199 (512)
++++++.++++.+.+|.. .+|..-.-++.+.+ +++++.+.++.+++.. +-+..+|+--..++.+.| .++++.+.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 344444444444444322 23333333333333 2344444444444432 224455555555555566 677777777
Q ss_pred HhcCCCC---chHHHHHHHHHHHc--------------CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHH
Q 043142 200 EQLREKR---VVSWNAMITGYAMH--------------GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 200 ~~m~~~~---~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~ 258 (512)
+++.+.+ ..+|+-....+... +.++++++.+++.....+-|...|.-+-..+.+.+..+
T Consensus 168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 7776544 45666666555542 44678888888887776766777776666666666533
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.42 E-value=0.0022 Score=51.42 Aligned_cols=90 Identities=11% Similarity=-0.046 Sum_probs=48.5
Q ss_pred HHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 043142 283 MVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEPHDAGNYVILSNIYAR--- 355 (512)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 355 (512)
|..+|...+..++|.++|++.-..-+...+..|...|.. .+++++|.+.|+++.+.+ ++.++..|..+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCC
Confidence 444444444555555555544212344445555555554 556666666666665542 34455566666665
Q ss_pred -ccChhHHHHHHHHHHhCCC
Q 043142 356 -AANWEGVAKLRKLMIDRGI 374 (512)
Q Consensus 356 -~g~~~~a~~~~~~m~~~g~ 374 (512)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 5666666666666655543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.38 E-value=0.00028 Score=57.45 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=68.2
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC----------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 043142 50 WNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA----------IEEGRRIHEDVIRNKWETDVFVGAALIDMYA 119 (512)
Q Consensus 50 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (512)
+.+.+++|++.++...+... -+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 44556667777776665431 134455555555555544 458888888888876 446677888888887
Q ss_pred hCC-----------ChHHHHHHHHhhhhCCCChhHHHHHHHH
Q 043142 120 KCS-----------CVVNARQVFDKILERDPSEATLVTVISA 150 (512)
Q Consensus 120 ~~g-----------~~~~A~~~~~~m~~~~pd~~t~~~ll~~ 150 (512)
+.| ++++|++.|++..+.+|+...|...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 764 8999999999999999987776655544
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.00058 Score=66.48 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHhccCChHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---Cch
Q 043142 284 VDLLGHSGRLDEACDLIMQM---------RVKPDP-GVWGALLNSCKLHGHVKLAELALEKLIEL-----EPHD---AGN 345 (512)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~ 345 (512)
+..+.+.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|.. ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456678888888887765 122333 37888889999999999999999988853 3444 346
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCccCCceeeEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 043142 346 YVILSNIYARAANWEGVAKLRKLMIDRGIKKSIACSWIEVKNKAHAFLSGDASHPNCDEIYAKLKWLEGRMK 417 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 417 (512)
++.|..+|...|++++|..++++..+--.. .--..||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999887652110 001358888888877777776665
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0055 Score=49.05 Aligned_cols=112 Identities=13% Similarity=-0.063 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHH
Q 043142 221 GHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGH----SGRLDEA 296 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 296 (512)
+++++|+..|++..+.+.|+.. |...|...+.+++|...|++..+. -+...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4578899999998888766655 666777778888899999988643 356777888888887 7899999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 043142 297 CDLIMQMRVKPDPGVWGALLNSCKL----HGHVKLAELALEKLIELEP 340 (512)
Q Consensus 297 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 340 (512)
.++|++.-..-+...+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999888334567788888888888 8999999999999988764
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.00096 Score=50.03 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 208 VSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 208 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
..|..+...|...|++++|+..|++..+..+.+...|..+..++...|++++|...|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444445555555555555444444333444444445555555555555554443
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.0034 Score=45.49 Aligned_cols=60 Identities=15% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 209 SWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 209 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
.|..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...+++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455555555555555555554444444455555555555555555555555554
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.23 E-value=0.006 Score=64.85 Aligned_cols=152 Identities=13% Similarity=0.018 Sum_probs=96.4
Q ss_pred HHHccCChHHHHH-HHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHH
Q 043142 16 LYSACDCLHNAHQ-LFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRR 94 (512)
Q Consensus 16 ~y~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 94 (512)
.....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-. .-.......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3345788999988 6655541 1233777788888899888887753211 11233456789998888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043142 95 IHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFEL 174 (512)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 174 (512)
+.+. -.+...|..|...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....|.
T Consensus 674 ~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 674 LLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 7543 24678899999999999999999999988743 33344444445666655555444444431
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHH
Q 043142 175 NVKVKTALVDMYAKCGLVKVARNLFE 200 (512)
Q Consensus 175 ~~~~~~~li~~y~~~g~~~~A~~~~~ 200 (512)
++....+|.+.|++++|.+++.
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHH
Confidence 2333444555666666655543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.21 E-value=0.0098 Score=55.56 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=29.5
Q ss_pred CCCchHHHHHHHHHH--HcCC---hHHHHHHHHHhHHCCCCCHHHHHHHHHHH
Q 043142 204 EKRVVSWNAMITGYA--MHGH---STKALDLFEKMKDEVQPDHITFVGVLSAC 251 (512)
Q Consensus 204 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~~~p~~~t~~~ll~a~ 251 (512)
..+..+|...+.+.. ..+. ..+|..+|++..+..|-....+..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667777665543 2333 46788888888877665555555544444
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.00068 Score=65.87 Aligned_cols=83 Identities=16% Similarity=0.019 Sum_probs=64.8
Q ss_pred ccCChHHHHHHHHhC---------CCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---CchHHHHH
Q 043142 289 HSGRLDEACDLIMQM---------RVKPDPG-VWGALLNSCKLHGHVKLAELALEKLIEL-----EPHD---AGNYVILS 350 (512)
Q Consensus 289 ~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~ 350 (512)
..|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++. +|+. ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888877665 2334443 8889999999999999999999998863 4444 45778899
Q ss_pred HHHHhccChhHHHHHHHHHHh
Q 043142 351 NIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.10 E-value=0.003 Score=61.36 Aligned_cols=93 Identities=11% Similarity=-0.082 Sum_probs=72.0
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCCHh-HHHHHH
Q 043142 253 RGGLFDEGRMFFESMVRDYH--IDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM---------RVKPDPG-VWGALL 316 (512)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 316 (512)
..|++++|+.++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46788888888887765321 223 2467888899999999999999988776 3456665 899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCCch
Q 043142 317 NSCKLHGHVKLAELALEKLIE-----LEPHDAGN 345 (512)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 345 (512)
..|..+|++++|+.+++++++ ++|+.|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999986 36766543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0049 Score=59.88 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=76.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCCHh
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYH--IDP----SVQHYTCMVDLLGHSGRLDEACDLIMQM---------RVKPDPG 310 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~ 310 (512)
..+..+...|++++|+.++++..+... +.| ...+++.|...|...|++++|+.++++. +..|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 335556677899999998888864321 223 2467888888999999999999888766 3456554
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCchH
Q 043142 311 -VWGALLNSCKLHGHVKLAELALEKLIE-----LEPHDAGNY 346 (512)
Q Consensus 311 -~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 346 (512)
+++.|...|...|++++|+.+++++++ ++|+.|.+-
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 889999999999999999999999986 467766443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.86 E-value=0.0031 Score=46.81 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=36.7
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 043142 284 VDLLGHSGRLDEACDLIMQM-RVKP-DPG-VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNY 346 (512)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 346 (512)
...+.+.|++++|+..+++. ...| +.. .|..+..++...|++++|...|+++++.+|.++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455666666666666555 2223 334 555566666666666666666666666666655444
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0073 Score=44.67 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCC-Chh-HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHc
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDP-SVQ-HYTCMVDLLGHSGRLDEACDLIMQM-RVKPDPG-VWGALLNSCKLH 322 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 322 (512)
....+...|++++|...|+.+++. .| +.. .+..+..+|.+.|++++|.+.|++. ...|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 445566777777777777777643 44 455 6777777777777777777777766 3334332 2211
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 043142 323 GHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 323 g~~~~A~~~~~~~~~~~p~~ 342 (512)
+.+.++...+++....+|.+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 44556666666665555544
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.65 E-value=0.018 Score=53.80 Aligned_cols=158 Identities=8% Similarity=-0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHh--cCC---chHHHHHHHHHHHCCCCCCc-chHHHHHHHHh
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAW--NGP---YEVAIELYYRLLEIGLVPDN-FTFPFALKACS 84 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~ 84 (512)
..++..+.-.-...++.+.... +..|..+|...+++... .+. ..+|..+|++.++. .|+. ..|..+.-++.
T Consensus 168 ~~I~~aL~~~l~~~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 168 ESLSKALNQPWPQRMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDI 244 (372)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3444444433333344444433 34477888888876543 333 46899999999884 5653 34443333332
Q ss_pred c---cC--ChHHH---HHHHHHHHH-hCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccC
Q 043142 85 A---LS--AIEEG---RRIHEDVIR-NKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIA 155 (512)
Q Consensus 85 ~---~~--~~~~a---~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~ 155 (512)
. .+ .-... .+.+..... ...+.+..++.++...+...|++++|...++++...+|+...|..+...+.-.|
T Consensus 245 ~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 245 VRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred HHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 1 01 11111 111111111 112556777777776666678888888888888887777666666666777778
Q ss_pred ChHHHHHHHHHHHHcC
Q 043142 156 ALPQGRELHGFSWRHR 171 (512)
Q Consensus 156 ~~~~a~~~~~~~~~~g 171 (512)
+.++|.+.+.++....
T Consensus 325 ~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 325 MNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcC
Confidence 8888888887777754
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.51 E-value=0.2 Score=38.87 Aligned_cols=139 Identities=9% Similarity=0.040 Sum_probs=94.1
Q ss_pred HcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 043142 219 MHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACD 298 (512)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 298 (512)
-.|..++..++..+...... ..-|+-++.-....-+-+-..+.++.+-+-+. ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ssn--i~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSST--KSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSC--HHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCC--ccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHHHH
Confidence 35666666666666654322 22233333222233334444445554432222 235667777777
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 299 LIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 299 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
.+-.++ .+.......+.....+|..+.-.+++..++..+++++....-+..+|.+.|+..+|.+++.+.-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 766664 345566778888999999999999999987778888999999999999999999999999999999985
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.24 E-value=0.038 Score=44.35 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=39.2
Q ss_pred CCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 307 PDPGVWGALLNSCKLHG---HVKLAELALEKLIELE-P-HDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 307 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
++..+.-.+.-++.+.+ +.++++.+++++.+.+ | .+...+..|.-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44445555555555555 4556666666666665 4 2345556666666677777777777666655
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.15 E-value=0.1 Score=55.31 Aligned_cols=101 Identities=8% Similarity=-0.025 Sum_probs=67.9
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
..++..+.+.|..++|.++.+.- ..-.....+.|++++|+++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 67778888888888888776421 11133456678888888876543 35567888888888888888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhh
Q 043142 91 EGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKI 134 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (512)
.|++.|..+.. |..+...|...|+.+...++-+..
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888887632 344555566667666655544333
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.15 E-value=0.053 Score=39.70 Aligned_cols=67 Identities=7% Similarity=-0.030 Sum_probs=40.4
Q ss_pred cchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 73 NFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 73 ~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
...+..+..++...++ .++|.+++++.++.. +.++.....+...+.+.|++++|+..|+++.+.+|+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3344444444433322 566666666666664 445566666666677777777777777777766665
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.05 E-value=2.2e-06 Score=81.34 Aligned_cols=261 Identities=13% Similarity=0.125 Sum_probs=175.4
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 37 NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
....|..|..+....|+..+|++-|-+. -|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567999999999999999998877432 25567999999999999999988888766554 456667789999
Q ss_pred HHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 043142 117 MYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVAR 196 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 196 (512)
+|+|.+++.+-.+++ .+||..-...+..-|...|.++.|+-+|..+ .-|..|...+.+.|++..|.
T Consensus 125 ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSST
T ss_pred HHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHH
Confidence 999999977655443 2377777888888898889888888777533 22344556667777777665
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC-C
Q 043142 197 NLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID-P 275 (512)
Q Consensus 197 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p 275 (512)
+.-++ ..++.+|..+-.+|...+.+.-|.-.--.+.- ...-...++..|...|.+++-+.+++.-. |++ .
T Consensus 191 daArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEagl---glErA 261 (624)
T 3lvg_A 191 DGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAAL---GLERA 261 (624)
T ss_dssp TTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTC
T ss_pred HHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh---CCCch
Confidence 43222 24567888888888888877655443333221 11112235556777788888777777664 443 3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC----CCC------CCHhHHHHHHHHHHHcCCHHHHH
Q 043142 276 SVQHYTCMVDLLGHSGRLDEACDLIMQM----RVK------PDPGVWGALLNSCKLHGHVKLAE 329 (512)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~------p~~~~~~~ll~~~~~~g~~~~A~ 329 (512)
....++-|.-.|++- +.++..+.++.. .+. -+...|.-++-.|....+++.|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 667777777777765 445555554443 111 12335667777777777766554
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.02 E-value=0.032 Score=50.02 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=65.3
Q ss_pred hHHHHHHHHhC-CCCCC---HhHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-cChhH
Q 043142 293 LDEACDLIMQM-RVKPD---PGVWGALLNSCKL-----HGHVKLAELALEKLIELEPHD-AGNYVILSNIYARA-ANWEG 361 (512)
Q Consensus 293 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 361 (512)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+. ..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34445555444 34555 3467777777777 489999999999999999974 88999999988884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 043142 362 VAKLRKLMIDRGIKKSIA 379 (512)
Q Consensus 362 a~~~~~~m~~~g~~~~~~ 379 (512)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.95 E-value=0.043 Score=41.16 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 277 VQHYTCMVDLLGHSGRLDEACDLIMQM-----R----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
..-+..|...+.+.|++..|..+++.. + -.+....+..|..++.+.|+++.|...++++++..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445566666666666666666554 0 1133457888999999999999999999999999998876543
Q ss_pred H
Q 043142 348 I 348 (512)
Q Consensus 348 ~ 348 (512)
.
T Consensus 85 n 85 (104)
T 2v5f_A 85 N 85 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.68 E-value=0.00065 Score=64.88 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 6 HPVLATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 6 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
.+.+|+.|..++.+.|++.+|+.-| +...|+..|..+|.+..+.|.+++-+..+.-.++..- +...=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4668999999999999999998777 4455777888999999999999998888876655422 44556788999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC----------------------CChhH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD----------------------PSEAT 143 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------pd~~t 143 (512)
.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+..-. -+..|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 998776554432 4666666778888888888888888887765432 46678
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHc
Q 043142 144 LVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR---EKRVVSWNAMITGYAMH 220 (512)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 220 (512)
|-.+-.+|...+.+..|...--.++-.. + -...++..|-+.|.+++-+.+++.-. +.-.-.++-|.-.|++-
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 9999999999988877654433333221 1 12346777889999999888888754 33456677777777765
Q ss_pred CChHHHHHHHHHhHHC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 043142 221 GHSTKALDLFEKMKDE-VQPDHITFVGVLSACSRGGLFDEGRMFFE 265 (512)
Q Consensus 221 g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 265 (512)
++++..+.++..-.. ++|- ++++|.+...|.++.-++.
T Consensus 277 -~PeKlmEHlklf~sriNipK------viracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPK------VLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTT------THHHHTTTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHH------HHHHHHHHhhHHHHHHHHh
Confidence 566766666554332 1243 4455555555555444433
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.07 Score=42.81 Aligned_cols=85 Identities=11% Similarity=-0.071 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC---ChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHH
Q 043142 55 EVAIELYYRLLEIGLVPDNFTFPFALKACSALS---AIEEGRRIHEDVIRNKWET--DVFVGAALIDMYAKCSCVVNARQ 129 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 129 (512)
..+.+-|.+....|. ++..+...+..++++.+ +++++..+++.+.+.. .| +...+-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666666666554 56667777777888877 6668999999988875 23 23444456677889999999999
Q ss_pred HHHhhhhCCCCh
Q 043142 130 VFDKILERDPSE 141 (512)
Q Consensus 130 ~~~~m~~~~pd~ 141 (512)
.|+.+.+.+|+.
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 999999888853
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.42 Score=39.34 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 043142 184 DMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMF 263 (512)
Q Consensus 184 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~ 263 (512)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3446678888888887766 3466788888888888888888888877642 34444445556666665554
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043142 264 FESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKL 335 (512)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 335 (512)
-+....+ | -++.....+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4443222 1 23444555666788888888887775322211 1123456666676666554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.23 E-value=1.1 Score=36.96 Aligned_cols=103 Identities=6% Similarity=-0.041 Sum_probs=60.9
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHH
Q 043142 82 ACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGR 161 (512)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~ 161 (512)
.....|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHH
Confidence 344567777777776554 3566788888888888888888888777642 333333444455555555
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 162 ELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
.+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444444443 12333444455666666666665443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.21 E-value=0.092 Score=39.26 Aligned_cols=68 Identities=18% Similarity=-0.028 Sum_probs=44.3
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChh
Q 043142 75 TFPFALKACSALSAIEEGRRIHEDVIRNK------WETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEA 142 (512)
Q Consensus 75 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~ 142 (512)
.+..+...+...++++.|...++..++.- -.+...++..|..+|.+.|+++.|...+++..+.+|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 34445555566666666666666555431 123456777788888888888888888888877777543
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.53 E-value=5.7 Score=41.99 Aligned_cols=90 Identities=8% Similarity=-0.047 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCC--------------chHHHHHHH----HHHhcCCch----HHHHHHHHHHH
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRN--------------LFLWNVLIR----AYAWNGPYE----VAIELYYRLLE 66 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--------------~~~~~~li~----~~~~~g~~~----~A~~~~~~m~~ 66 (512)
+...++..+.+.|...+|..+.-+..+-| ...|..++. +....-..+ +.+++.-++..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 45677777778888888877766654311 123333332 222222222 22222222211
Q ss_pred CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 043142 67 IGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIR 101 (512)
Q Consensus 67 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 101 (512)
. . +..-|..+++...+.++.+.+.++|..+.+
T Consensus 227 k-~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 N-M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp H-S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred h-C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 112477778888889999999999998764
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.43 E-value=0.14 Score=40.67 Aligned_cols=55 Identities=11% Similarity=-0.075 Sum_probs=40.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 043142 321 LHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIK 375 (512)
Q Consensus 321 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 375 (512)
..+|.++|.++|+.+++....-+..|...+..-.+.|+.+.|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3478888888888888764434556666677777889999999998888776654
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.41 E-value=0.44 Score=42.73 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhC-----CChHHHHHHHHhhhhCCCC--hhHHHHHHHHHhc-cCCh
Q 043142 89 IEEGRRIHEDVIRNKWETD---VFVGAALIDMYAKC-----SCVVNARQVFDKILERDPS--EATLVTVISASAD-IAAL 157 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~pd--~~t~~~ll~~~~~-~~~~ 157 (512)
...|+..+++.++.. |+ -..|..|...|.+. |+.++|.+.|++..+.+|+ ..++......++. .|+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 355666677777663 33 55777788888774 7888888888888887774 4566666666666 3777
Q ss_pred HHHHHHHHHHHHcCCC--CchHHHH
Q 043142 158 PQGRELHGFSWRHRFE--LNVKVKT 180 (512)
Q Consensus 158 ~~a~~~~~~~~~~g~~--~~~~~~~ 180 (512)
+.+.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 7777777777776544 5544444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.30 E-value=0.86 Score=36.15 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=69.2
Q ss_pred CCCCchHHHHHHHHHHhcCCc------hHHHHHHHHHHHCCCCCCcc----hHHHHHHH---HhccCChHHHHHHHHHHH
Q 043142 34 PQRNLFLWNVLIRAYAWNGPY------EVAIELYYRLLEIGLVPDNF----TFPFALKA---CSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 34 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~~---~~~~~~~~~a~~~~~~~~ 100 (512)
...|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..+.-- +...+++++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345888999889888888999 8888899988764 666532 12222111 123367777788887776
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCC
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDP 139 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p 139 (512)
+.+-.- ..+|-.....-.+.|+++.|++++.+.....|
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 653222 66666666666777777777777777766655
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.24 E-value=2.3 Score=33.04 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=86.9
Q ss_pred hCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 043142 120 KCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLF 199 (512)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 199 (512)
-.|.+++..++..+..... +..-++.++--....-+-+...++++.+-+ -.| ...||++......+
T Consensus 19 ldG~v~qGveii~k~~~ss-ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS-TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS-CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC-CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHHH
Confidence 3566777777776665543 233344444333333344433333333221 111 24567776666666
Q ss_pred HhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 043142 200 EQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHID 274 (512)
Q Consensus 200 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 274 (512)
-.+.. +....+.-+..+..+|+-++-.+++..+.....|++.....+..||.+.|+..++..++.+..++ |++
T Consensus 85 ~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 85 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 65532 33445566777888999988888888876655588888888999999999999999999988754 653
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.17 E-value=1.2 Score=46.06 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 043142 319 CKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
|...|+++.|+++.+++...-|.+-.+|..|+..|.+.|+|+.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6788999999999999999999999999999999999999999999999874
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.72 E-value=0.33 Score=37.42 Aligned_cols=87 Identities=9% Similarity=-0.096 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH---HHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCChHHHHH
Q 043142 54 YEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEE---GRRIHEDVIRNKWE-TDVFVGAALIDMYAKCSCVVNARQ 129 (512)
Q Consensus 54 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~ 129 (512)
...+.+-|.+....|. |+..+-..+..++.+..+... +..+++.+.+.+.+ ......-.|.-++.|.|++++|++
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445555555544443 555565566667777665554 77777777765411 122233345567778888888888
Q ss_pred HHHhhhhCCCCh
Q 043142 130 VFDKILERDPSE 141 (512)
Q Consensus 130 ~~~~m~~~~pd~ 141 (512)
.++.+.+..|+.
T Consensus 96 ~~~~lL~~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 888888777753
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.10 E-value=1.4 Score=33.97 Aligned_cols=73 Identities=12% Similarity=-0.076 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHhccCChHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH
Q 043142 275 PSVQHYTCMVDLLGHSGRLDE---ACDLIMQM-RVK-P--DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYV 347 (512)
Q Consensus 275 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 347 (512)
|+..+--.+.-++.++....+ ++.+++.. ... | .....-.|.-++.+.|++++|.+.++.+++.+|.|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554444 45555544 111 2 1123345666788899999999999999999998865443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.48 E-value=0.52 Score=44.92 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh-----CCCccCCce
Q 043142 311 VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID-----RGIKKSIAC 380 (512)
Q Consensus 311 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 380 (512)
....++..+...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|++.|+...+ .|+.|.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999999999999989999999999999999999999988753 588887753
No 240
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.88 E-value=3.5 Score=29.88 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=66.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
.....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+....||++.|.++-. .+.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34457788888887777664 33333333455678999999999999999999999988765 467888888888888
Q ss_pred hHHCCCCCHHHHHH
Q 043142 233 MKDEVQPDHITFVG 246 (512)
Q Consensus 233 m~~~~~p~~~t~~~ 246 (512)
+...|.|....|..
T Consensus 94 la~sg~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSSDPALADFAA 107 (115)
T ss_dssp HHTCSSHHHHHHHH
T ss_pred HHhCCCHHHHHHHH
Confidence 88777776666654
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.61 E-value=3.7 Score=29.77 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=66.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 043142 153 DIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEK 232 (512)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 232 (512)
.....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||++.|.++-. .+.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567788888887777664 33333333455678999999999999999999999988865 467888888888878
Q ss_pred hHHCCCCCHHHHHH
Q 043142 233 MKDEVQPDHITFVG 246 (512)
Q Consensus 233 m~~~~~p~~~t~~~ 246 (512)
+...|.|....|..
T Consensus 95 la~sg~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQDPRIQTFVN 108 (116)
T ss_dssp HTTCCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHH
Confidence 87777776666654
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.15 E-value=7.8 Score=42.65 Aligned_cols=162 Identities=9% Similarity=-0.044 Sum_probs=88.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCC
Q 043142 78 FALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAA 156 (512)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~ 156 (512)
.++..+...+..+.+.++.... +.++...-.+..+|..+|++++|...|.+....- .+.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----------~~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----------AV 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------SS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------hh
Confidence 3444555556666555543322 3444444456677888888888888887763211 000000 00
Q ss_pred hHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCc----hHHHHHHHHHHHcCChHHH
Q 043142 157 LPQGRELHGFSWRHR--FELNVKVKTALVDMYAKCGLVKVARNLFEQL----REKRV----VSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 157 ~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m----~~~~~----~~~~~li~~~~~~g~~~~A 226 (512)
.. . ...+.... ...-..-|.-++..+.+.|.++.+.+.-... ...+. ..|..+..++...|++++|
T Consensus 882 ~~---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LR---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HH---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hc---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00 0 01111110 1112345666777777777777666554332 22221 2588888999999999999
Q ss_pred HHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHH
Q 043142 227 LDLFEKMKDEVQPDHITFVGVLSACSRGGLFDE 259 (512)
Q Consensus 227 ~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~ 259 (512)
...+-.+..... -...+..|+..++..|..+.
T Consensus 958 y~aL~~~pd~~~-r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPL-KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSS-CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHH-HHHHHHHHHHHHHhCCChhh
Confidence 998887765432 23445556666666665443
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.02 E-value=6.7 Score=43.19 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=79.7
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----------------
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN----------------- 73 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------- 73 (512)
..++..+.+.+..+.|+++....+. +..+--.+..+|...|++++|.+.|.+.-. |+..+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 3455556667777777776655543 444434556677888999999998876521 221111
Q ss_pred ------chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhH
Q 043142 74 ------FTFPFALKACSALSAIEEGRRIHEDVIRNKWETDV----FVGAALIDMYAKCSCVVNARQVFDKILERDPSEAT 143 (512)
Q Consensus 74 ------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t 143 (512)
.-|..++..+.+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.++...--...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 11444555566666666666666555554322121 24566666666677777776666666543322333
Q ss_pred HHHHHHHHhccC
Q 043142 144 LVTVISASADIA 155 (512)
Q Consensus 144 ~~~ll~~~~~~~ 155 (512)
+..++...+..+
T Consensus 974 Lr~LV~~lce~~ 985 (1139)
T 4fhn_B 974 LLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 444444444333
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.36 E-value=2.9 Score=43.25 Aligned_cols=127 Identities=8% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-hHHHHHHHHhhhhC--------CCCh----
Q 043142 76 FPFALKACSALSA-IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSC-VVNARQVFDKILER--------DPSE---- 141 (512)
Q Consensus 76 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~--------~pd~---- 141 (512)
...+++.+...++ .+.|..+++.+.+.....+.....+++....+.++ --+|.++..+..+. .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445566666666 57899999998887522233333445555444442 23455555444321 1111
Q ss_pred -------hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 043142 142 -------ATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLR 203 (512)
Q Consensus 142 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 203 (512)
..+..-..-|...|+++.|.++-.+.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 011122234556899999999999888763 5567899999999999999999999999886
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.30 E-value=2.4 Score=34.30 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCc-------hHHHHHHHHHHHcCChHHHHHHHHHh
Q 043142 182 LVDMYAKCGLVKVARNLFEQLR-----EKRV-------VSWNAMITGYAMHGHSTKALDLFEKM 233 (512)
Q Consensus 182 li~~y~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 233 (512)
-+..+...|.++.|+-+.+.+. .+++ .+...+..++...+++..|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3555666677777766655532 1221 23444556666666677776666664
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.97 E-value=14 Score=33.91 Aligned_cols=130 Identities=11% Similarity=-0.027 Sum_probs=74.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHH----HHHHHCCCCCCcchHHHHHHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELY----YRLLEIGLVPDNFTFPFALKACS 84 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 84 (512)
.+.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345555556666666666665422 223456667776665554 44455678888877777777766
Q ss_pred ccCC--hHH---HHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHH
Q 043142 85 ALSA--IEE---GRRIHEDVIRNK--WETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISAS 151 (512)
Q Consensus 85 ~~~~--~~~---a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~ 151 (512)
.... .+. ..+...+-.+.| ..-|+.....+...|.+.+++.+|..-|- ...++...+|..++-.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEW 177 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHH
Confidence 5543 121 122222333333 23467777888888888888888888773 22222234555544443
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.77 E-value=27 Score=37.04 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=69.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHH--HHhcCCHHHHHHHHHhcCC-CC-chHHH---HHHHHHHHcCCh
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDM--YAKCGLVKVARNLFEQLRE-KR-VVSWN---AMITGYAMHGHS 223 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--y~~~g~~~~A~~~~~~m~~-~~-~~~~~---~li~~~~~~g~~ 223 (512)
+...|+-+....++..+.+.. +..+...++.+ +.-.|+-+.+..+.+.+.. .+ .+-|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345555555566665555431 22222222222 2345565555555555442 22 22232 233345556665
Q ss_pred HHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh-HHHHHHHHh
Q 043142 224 TKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL-DEACDLIMQ 302 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~ 302 (512)
....++++.+......+......+.-++...|+.+.+.++++.+.+. -.|.+..-..+.-+....|.. .+|.+.+..
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 54445666665442233333333333443445555555555544321 234444444444444434332 455666666
Q ss_pred CCCCCCHh
Q 043142 303 MRVKPDPG 310 (512)
Q Consensus 303 m~~~p~~~ 310 (512)
+...+|..
T Consensus 655 L~~D~d~~ 662 (963)
T 4ady_A 655 LTKDPVDF 662 (963)
T ss_dssp HHTCSSHH
T ss_pred HccCCCHH
Confidence 53334444
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.46 E-value=3.1 Score=39.48 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcCCCCChhH
Q 043142 211 NAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVR----DYHIDPSVQH 279 (512)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 279 (512)
..++..+...|++++|+..+..+....+-+...+..++.++...|+..+|...|+...+ +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33555666677777777777777666666666777777777777777777777666532 3466665543
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.43 E-value=2.7 Score=30.62 Aligned_cols=60 Identities=23% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 56 VAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 56 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555666666667778888888888888888888888888887765443 333445665553
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.07 E-value=15 Score=35.45 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHhcC-----CCC----chHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHH----hcCCC
Q 043142 190 GLVKVARNLFEQLR-----EKR----VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSAC----SRGGL 256 (512)
Q Consensus 190 g~~~~A~~~~~~m~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~----~~~g~ 256 (512)
|+++.|.+.+..+. ..| ......++..+...|+++...+.+.-+......-......++..+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 77888888775543 223 245677888999999999988877766543221122223344333 22332
Q ss_pred HHH--HHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhccCChHHHHHHHHhCC-----CCCC---HhHHHHHHHH
Q 043142 257 FDE--GRMFFESMVRDYHIDP--------SVQHYTCMVDLLGHSGRLDEACDLIMQMR-----VKPD---PGVWGALLNS 318 (512)
Q Consensus 257 ~~~--a~~~~~~~~~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~---~~~~~~ll~~ 318 (512)
.+. -..+.+... .+.. .......|...|...|++.+|.+++..+. ..+. ...+..-++.
T Consensus 110 ~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 110 LDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp THHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 222222111 1111 12344678899999999999999998872 1111 2366777888
Q ss_pred HHHcCCHHHHHHHHHHHHh---cCCCC----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 319 CKLHGHVKLAELALEKLIE---LEPHD----AGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 319 ~~~~g~~~~A~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
|...+|+..|..+++++.. ..++. ...|...+..+...++|.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999753 12322 24667888889999999999988877754
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.60 E-value=9 Score=33.74 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=31.6
Q ss_pred HHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043142 217 YAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMV 268 (512)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 268 (512)
..+.|..++|++....-.+..+.|...-..++.-+|-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455666666666666666655555555556666666666666666666554
No 252
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.32 E-value=19 Score=36.65 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHh
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAW 50 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 50 (512)
+| ++|-.+.|||.+++|.++.++... .-...+-..+..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 44 467788899999999998877642 111345555666653
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.93 E-value=5.3 Score=29.12 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 223 STKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 223 ~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
.-+..+-++.+-.... |++....+.+.||.+.+++..|.++|+.+..+.| +....|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456666666666667 9999999999999999999999999999976543 33456777664
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.76 E-value=11 Score=29.50 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 325 VKLAELALEKLIELEPHD-AGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 325 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
..+++.+++.+...+|.. ......|+-++.+.|++++|+++.+.+.+.
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445666666666655532 234445666667777777777776666553
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.30 E-value=34 Score=34.56 Aligned_cols=287 Identities=9% Similarity=-0.039 Sum_probs=131.6
Q ss_pred ccCChHHHHHHHccCCCCCch---HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCChHHHHH
Q 043142 19 ACDCLHNAHQLFDRIPQRNLF---LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDN-FTFPFALKACSALSAIEEGRR 94 (512)
Q Consensus 19 ~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~ 94 (512)
+.|+++.+.++-..+..--.. .|..+...+ ....+.+....+.+ ..-.|-. ..-...+..+++.+++.....
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~---~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~ 93 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLA 93 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhCCCHHHHHH
Confidence 468888888887776432222 333332222 11233444444333 2111111 112333455666677666555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHH--HHHHHHHHHHcC
Q 043142 95 IHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAALPQ--GRELHGFSWRHR 171 (512)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~g 171 (512)
.+.. .+.+...--....+....|+-++|......+=..+ ..+.....++....+.|.+.. ..+-+..+
T Consensus 94 ~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~a---- 164 (618)
T 1qsa_A 94 FSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLA---- 164 (618)
T ss_dssp HCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHH----
T ss_pred hccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHH----
Confidence 4332 24455555556677777888766666555542222 233445555555554443322 11222222
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---------------------------CCCch---HHHHHHHHHHHcC
Q 043142 172 FELNVKVKTALVDMYAKCGLVKVARNLFEQLR---------------------------EKRVV---SWNAMITGYAMHG 221 (512)
Q Consensus 172 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---------------------------~~~~~---~~~~li~~~~~~g 221 (512)
...|+...|..+...+. .++.. .+..-+.-+.+ .
T Consensus 165 ---------------l~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 165 ---------------MKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp ---------------HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-H
T ss_pred ---------------HHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-c
Confidence 22333333333332221 11110 01111222233 3
Q ss_pred ChHHHHHHHHHhHHCCCCCHHH----HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHH
Q 043142 222 HSTKALDLFEKMKDEVQPDHIT----FVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEAC 297 (512)
Q Consensus 222 ~~~~A~~~~~~m~~~~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 297 (512)
+++.|...|.........+... ...+.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777777765443322221 122222333344244455555544322 233333333444445667888888
Q ss_pred HHHHhCCCCC-C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043142 298 DLIMQMRVKP-D-PGVWGALLNSCKLHGHVKLAELALEKLIE 337 (512)
Q Consensus 298 ~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 337 (512)
..|+.|+..+ + ..-.--+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888775322 1 11112234455667788888887777764
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.98 E-value=32 Score=32.43 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 246 GVLSACSRGGLFDEGRMFFESMVRDYHIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 246 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
.++..|...|++.+|..++..+.++..-..| ..+|..-+.+|...+++.++...+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555556666666666665555443221111 234444555566666666666555444
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.96 E-value=6.7 Score=30.33 Aligned_cols=74 Identities=12% Similarity=-0.060 Sum_probs=49.8
Q ss_pred CCCCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 68 GLVPDNFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 68 g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
+-.|+..|--....++.+..+ ..++..+++.+.+.+........--|.-++.|.|++++|++..+.+.+..|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 344555554455556665554 45688888888877622233444456677889999999999999988888764
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.12 E-value=15 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCC
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERD 138 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 138 (512)
..+---+..+|.+.+++++|+.+++.++.+.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 3444557778888899999998888876543
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.88 E-value=13 Score=28.75 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCC-CCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 326 KLAELALEKLIELEPH-DAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 326 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
.+++.+++.+.+.+|. .......|+-++.+.|++++|++..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555554442 223444455555555555555555555543
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.86 E-value=41 Score=32.32 Aligned_cols=180 Identities=9% Similarity=0.083 Sum_probs=111.9
Q ss_pred CChHHHHHHHHhhhhC---C----CChhHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCchHHHHHHH----HHHHhc
Q 043142 122 SCVVNARQVFDKILER---D----PSEATLVTVISASADIAALPQGRELHGFSWRH-RFELNVKVKTALV----DMYAKC 189 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~---~----pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li----~~y~~~ 189 (512)
|+++.|++.+-.+.+. . ........++..|...++++...+.+..+.+. |.... ....++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 6788888877666532 1 23445778888999999999887777665543 32222 222333 333333
Q ss_pred CCHH--HHHHHHHhcCC---CCc-------hHHHHHHHHHHHcCChHHHHHHHHHhHHC--CCCC----HHHHHHHHHHH
Q 043142 190 GLVK--VARNLFEQLRE---KRV-------VSWNAMITGYAMHGHSTKALDLFEKMKDE--VQPD----HITFVGVLSAC 251 (512)
Q Consensus 190 g~~~--~A~~~~~~m~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~----~~t~~~ll~a~ 251 (512)
...+ .-..+.+.... .-+ .....|...|...|++.+|..++.++... +.-+ ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 23333333321 111 12345677888999999999999998643 2222 23466677788
Q ss_pred hcCCCHHHHHHHHHHHHHhc-CCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 252 SRGGLFDEGRMFFESMVRDY-HIDPS----VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
...+++.+|..++.++.... ...++ ...|..++..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999999998874211 11222 346677788888888888887776554
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.15 E-value=7.2 Score=30.13 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 59 ELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 59 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
+-++.+...++.|++......|++|.+.+|+..|.++++-+.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555443
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.48 E-value=31 Score=31.99 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCC--hHHHHHHHHHhHHCCC
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGH--STKALDLFEKMKDEVQ 238 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 238 (512)
.+.++.=|...|+.++|.+.++++..+. .+...++..++-+.++ .+....++..+...++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 4678888888999999999999987664 2344555555554433 3457777777777766
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.89 E-value=15 Score=28.37 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=46.6
Q ss_pred HHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 043142 224 TKALDLFEKMKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVD 285 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 285 (512)
-+...-++.+..... |++......+.+|.+.+++..|.++|+.++.+. .+....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 355555666666667 999999999999999999999999999997554 444556777664
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.33 E-value=6.2 Score=34.77 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=40.3
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 043142 285 DLLGHSGRLDEACDLIMQM-RVKP-DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHD 342 (512)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 342 (512)
..+.+.|.+++|++....- +-.| |...-..|+.-++..|++++|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456778888887766544 4344 44455667777888888888888888888887753
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.49 E-value=58 Score=30.64 Aligned_cols=90 Identities=13% Similarity=-0.044 Sum_probs=63.0
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC---CCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCch----
Q 043142 281 TCMVDLLGHSGRLDEACDLIMQMR---VKPDP-----GVWGALLNSCKLHGHVKLAELALEKLIELE---PHDAGN---- 345 (512)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~---~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~---- 345 (512)
.-|+..|...|++.+|.+++.++. .+.|. ..+..-+..|...+++.++..++.++.... +.+|..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 368899999999999999988871 11121 145556677889999999999999887542 233322
Q ss_pred HHHHHHHHH-hccChhHHHHHHHHHH
Q 043142 346 YVILSNIYA-RAANWEGVAKLRKLMI 370 (512)
Q Consensus 346 ~~~l~~~~~-~~g~~~~a~~~~~~m~ 370 (512)
...-+.++. ..++|..|...|-+..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 223344456 7899999988876653
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.40 E-value=53 Score=29.71 Aligned_cols=112 Identities=10% Similarity=0.030 Sum_probs=65.5
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCcchHHHHHHHHhc
Q 043142 10 ATKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIEL----YYRLLEIGLVPDNFTFPFALKACSA 85 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 85 (512)
+.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+...+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44444555555555555554322 22345666777666554 4444556788887777777766654
Q ss_pred cC--Ch---HHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 043142 86 LS--AI---EEGRRIHEDVIRNKW--ETDVFVGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 86 ~~--~~---~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
.. .. .-..+...+-.+.|- .-|+.....+...|.+.|++.+|..-|-
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 32 11 222333333333331 2367788888888888899888888775
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.50 E-value=40 Score=28.17 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred HHHHHHhC-CCCCCHh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 043142 296 ACDLIMQM-RVKPDPG---VWGALLNSCKLHGHVKLAELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRKLM 369 (512)
Q Consensus 296 A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 369 (512)
+...|... ..+.|.. .|-..+..+ ..++...+..+|..|...+ ..-+..|...+..+...|++.+|.++++.=
T Consensus 63 c~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 63 CLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344333 2445554 444444433 2444678888888887654 556678888888999999999999999887
Q ss_pred HhCCCcc
Q 043142 370 IDRGIKK 376 (512)
Q Consensus 370 ~~~g~~~ 376 (512)
.+++-+|
T Consensus 142 I~~~A~P 148 (202)
T 3esl_A 142 AENNCRP 148 (202)
T ss_dssp HHTTCBS
T ss_pred HHcCCcc
Confidence 7766543
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.44 E-value=23 Score=30.92 Aligned_cols=55 Identities=20% Similarity=0.085 Sum_probs=24.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcc---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 043142 44 LIRAYAWNGPYEVAIELYYRLLEIGLVPDNF---TFPFALKACSALSAIEEGRRIHEDVIRNKWET 106 (512)
Q Consensus 44 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 106 (512)
.+...++.|+.+. ++.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..+
T Consensus 8 ~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~ 65 (285)
T 1wdy_A 8 LLIKAVQNEDVDL----VQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADP 65 (285)
T ss_dssp HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHH----HHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCC
Confidence 3444556666543 33444455444422 1112333444455554 333444555443
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.29 E-value=43 Score=26.20 Aligned_cols=72 Identities=11% Similarity=-0.082 Sum_probs=50.5
Q ss_pred CCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCCh
Q 043142 70 VPDNFTFPFALKACSALSA---IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSE 141 (512)
Q Consensus 70 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~ 141 (512)
.|+..+-.....++.+..+ ..++..+++.+.+.+........--|.-++.|.|++++|++..+.+.+..|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4555555555556666554 45788899988887532233334446678899999999999999999988864
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.28 E-value=13 Score=27.00 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=27.9
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043142 47 AYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK 103 (512)
Q Consensus 47 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 103 (512)
.+...|++++|+.+.+.+. .||...|..+- -.+.|-.+++...+..+...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 4456677777766665442 45555554432 235555566655555555544
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.57 E-value=12 Score=27.09 Aligned_cols=51 Identities=14% Similarity=-0.077 Sum_probs=26.8
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 043142 47 AYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNK 103 (512)
Q Consensus 47 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 103 (512)
.+...|++++|+.+.+.+. .||...|..+- -.+.|-.+++...+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3455666666666554432 45554444332 235555555555555555554
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.08 E-value=44 Score=31.89 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCch----H
Q 043142 278 QHYTCMVDLLGHSGRLDEACDLIMQMR-----VKPDPGVWGALLNSCKLHGHVKLAELALEKLIELE--PHDAGN----Y 346 (512)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~----~ 346 (512)
.+...+.+.|.+.|++++|.+.+.++. ..--...+-.+++.+...+++..+...++++.... ..++.. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 355566666777777777777776661 11123356666666777777777777777765432 112221 1
Q ss_pred HHHHHHHHhccChhHHHHHHHHHH
Q 043142 347 VILSNIYARAANWEGVAKLRKLMI 370 (512)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~m~ 370 (512)
..-+..+...+++.+|.+.|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 122233445667777776665543
No 273
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.05 E-value=44 Score=31.64 Aligned_cols=337 Identities=12% Similarity=0.102 Sum_probs=155.7
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhcc
Q 043142 12 KLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF--TFPFALKACSAL 86 (512)
Q Consensus 12 ~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~ 86 (512)
+.+..-++.|+++-+..+++.-..++ ....+. +...++.|+.+-+.-++ +.|..++.. .-.+.+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHC
Confidence 44556677899999999988755443 222333 33445667765444443 445444322 112334444566
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHH
Q 043142 87 SAIEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVISASADIAALPQGREL 163 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~ 163 (512)
|+.+- .+.+++.|..++... ..+.+...++.|+.+-+..+++.-...+ .+...+ +.+...+..|+.+.+
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v--- 162 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVA--- 162 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHH---
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHH---
Confidence 77654 444555565443221 1223445567788887777776532221 111111 233344455665544
Q ss_pred HHHHHHcCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 164 HGFSWRHRFELNVK--VKTALVDMYAKCGLVKVARNLFEQLREKRV---VSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 164 ~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
+.+++.|..++.. ...+.+...+..|+.+-+..+++.-..++. ..++.+ ...+..|+.+-+..+++.-.....
T Consensus 163 -~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~ 240 (437)
T 1n11_A 163 -ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQYGGSANA 240 (437)
T ss_dssp -HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 4445555544321 111234445667888777666665433222 222233 233456665544444432111111
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHhccCChHHHHHHHHhCCCCC---CHhHH
Q 043142 239 PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSV---QHYTCMVDLLGHSGRLDEACDLIMQMRVKP---DPGVW 312 (512)
Q Consensus 239 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~ 312 (512)
.+....+.|.. .+..|..+-...+++ .+..++. ... +.+...++.|..+-+..+++.- ..+ +...+
T Consensus 241 ~~~~g~t~L~~-A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~ 312 (437)
T 1n11_A 241 ESVQGVTPLHL-AAQEGHAEMVALLLS-----KQANGNLGNKSGL-TPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGY 312 (437)
T ss_dssp CCTTCCCHHHH-HHHTTCHHHHHHHHT-----TTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCC
T ss_pred CCCCCCCHHHH-HHHCCCHHHHHHHHh-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCC
Confidence 22222223333 344566654444433 2333321 111 2233344667776665555542 122 22222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccC
Q 043142 313 GALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKKS 377 (512)
Q Consensus 313 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 377 (512)
+. +...+..|+.+-...+++.-...+..+..-...|- .....|..+ +.+.+.+.|..++
T Consensus 313 t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 313 TP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp CH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCSC
T ss_pred CH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HHHHHHHCcCCCC
Confidence 23 33445677777665555442222222221122222 223455543 4455556676543
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.64 E-value=85 Score=28.67 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHH----HHhHHCCC-CCHHHHHHHHHHHh
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF----EKMKDEVQ-PDHITFVGVLSACS 252 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~-p~~~t~~~ll~a~~ 252 (512)
++.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.+. +|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666788899999998876432 23345566655544443 44445566 77777777777666
Q ss_pred cCCCHH-HHHHHHHHHHH---hcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHH
Q 043142 253 RGGLFD-EGRMFFESMVR---DYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVK 326 (512)
Q Consensus 253 ~~g~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 326 (512)
....-+ .=..+.+.+++ +.|-.| |+.....+...|.+.+++.+|+..|- .+..+....+..++-.+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 554311 11222222221 223223 67778888999999999999988874 3433334566555554444333
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHhccChhHHHHHHHHHHh
Q 043142 327 LAELALEKLIELEPHDAGNYV-ILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 327 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
|.+...|. -.+--|.-.++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222332 233456677899999888777654
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.85 E-value=1.3e+02 Score=30.52 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---CC
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAK---CS 122 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g 122 (512)
..+.-.|+++.|++.+-+. ...+.+.+...+.-+.-.+- ..+++..- .+ .| ..-+..||..|.+ ..
T Consensus 302 ~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhhcC
Confidence 3445567777777766543 22344444444443332221 11111110 01 11 2235678888875 47
Q ss_pred ChHHHHHHHHhhh
Q 043142 123 CVVNARQVFDKIL 135 (512)
Q Consensus 123 ~~~~A~~~~~~m~ 135 (512)
+..+|.+.|--+.
T Consensus 371 d~~~Al~Y~~li~ 383 (661)
T 2qx5_A 371 DPRVAVEYLVLIT 383 (661)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHh
Confidence 8888888877773
No 276
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=63.46 E-value=77 Score=28.69 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=43.4
Q ss_pred HHHhCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 043142 299 LIMQMRVKPDPG--VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMIDR 372 (512)
Q Consensus 299 ~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 372 (512)
+|...+++|.-. +...-+..+.+++++..|..+.+++++++|+.. ..++|.++...-...
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 344445565433 677788889999999999999999999998532 335677777766544
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.71 E-value=39 Score=32.32 Aligned_cols=98 Identities=12% Similarity=-0.119 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChhHHHH--
Q 043142 39 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD--NFTFPFALKACSALSAIEEGRRIHEDVIRNKW-ETDVFVGAA-- 113 (512)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~-- 113 (512)
.++..+...|.+.|++++|.+.|.++...-..+. ...+-.+++.+...+++..+.....++...-. .+|....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4677788999999999999999999987543333 24577788889999999999999888754311 223222221
Q ss_pred --HHHHHHhCCChHHHHHHHHhhhh
Q 043142 114 --LIDMYAKCSCVVNARQVFDKILE 136 (512)
Q Consensus 114 --li~~~~~~g~~~~A~~~~~~m~~ 136 (512)
-...+...+++..|-+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12223457899999888877654
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.26 E-value=75 Score=26.25 Aligned_cols=184 Identities=11% Similarity=0.047 Sum_probs=104.1
Q ss_pred CChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 043142 21 DCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVI 100 (512)
Q Consensus 21 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (512)
++.+....+.+.+..+|...-...+..+.+.|.. .+...+.++.. .+|...-...+.++...++.+... .+..++
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~-~L~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVE-PLIKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHH-HHHHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHH-HHHHHH
Confidence 3444444555556667766666667777777764 34444444443 245555566667777777644333 333332
Q ss_pred HhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHH
Q 043142 101 RNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKT 180 (512)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 180 (512)
+ .++..+-...+.++.+.|+.+.. ..+..+. .+++...-...+.++...+..+.... +..+.+ .++..+-.
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~ 161 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAV-EPLIKAL-KDEDWFVRIAAAFALGEIGDERAVEP-LIKALK---DEDGWVRQ 161 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---CSSHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHH-hCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHc---CCCHHHHH
Confidence 2 46777777788888888775443 4444443 34666666677777777776543333 333332 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Q 043142 181 ALVDMYAKCGLVKVARNLFEQL-REKRVVSWNAMITGYAM 219 (512)
Q Consensus 181 ~li~~y~~~g~~~~A~~~~~~m-~~~~~~~~~~li~~~~~ 219 (512)
..+.++.+.+..+ +...+..+ ..++...-...+.++.+
T Consensus 162 ~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 162 SAADALGEIGGER-VRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHCSHH-HHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCchh-HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7777888777743 44444433 34454443444444443
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.55 E-value=1.6e+02 Score=29.70 Aligned_cols=77 Identities=10% Similarity=-0.108 Sum_probs=47.1
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI 89 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 89 (512)
+.-+..+++.+++...+.++.. +..+...--....+....|+..+|......+-..|- .....+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 3445666677888888887766 333433333355667777887777777777655542 2344566677666655443
No 280
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.04 E-value=69 Score=26.01 Aligned_cols=151 Identities=9% Similarity=-0.050 Sum_probs=74.1
Q ss_pred HHHHccCChHHHHHHHccCC-C---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc---hHHHHHHHHhccC
Q 043142 15 HLYSACDCLHNAHQLFDRIP-Q---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF---TFPFALKACSALS 87 (512)
Q Consensus 15 ~~y~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~ 87 (512)
...+..|+.+....+++.-. . +|..-++.|.. .++.|+. ++++.+.+.|..|+.. ..+.+ ...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSPY-LYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcC
Confidence 34456889999999987654 2 23334444443 3455664 4455555666665533 23333 3444556
Q ss_pred ChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHhh-hhCC-CChhHHHHHHHHHhccCChHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETD---VFVGAALIDMYAKCSCVVNARQVFDKI-LERD-PSEATLVTVISASADIAALPQGRE 162 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~-pd~~t~~~ll~~~~~~~~~~~a~~ 162 (512)
+.+-+..+++. .+..++ ..-. +.+...++.|+.+-+..+++.- ...+ +|..-.+.+..++........-.+
T Consensus 84 ~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp CHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred CHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 76655444422 222221 1111 2334455677777666666553 1111 222223333333332222333355
Q ss_pred HHHHHHHcCCCCc
Q 043142 163 LHGFSWRHRFELN 175 (512)
Q Consensus 163 ~~~~~~~~g~~~~ 175 (512)
+.+.+++.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 6666666665554
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.51 E-value=80 Score=26.05 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=100.4
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHH
Q 043142 71 PDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISA 150 (512)
Q Consensus 71 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~ 150 (512)
+|...-...+.++...++.+.. ..+..+++ .+|..+-...+..+.+.|+.+.. ..+..+. .+++...-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l-~~~~~~vr~~a~~a 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKAL-KDEDGWVRQSAAVA 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHT-TCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHH-cCCCHHHHHHHHHH
Confidence 4555555555666666653322 22222332 45667777777777777764443 3333333 34666666777777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 043142 151 SADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLF 230 (512)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 230 (512)
+...++.+....+.. +.+ .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+. .++...+
T Consensus 105 L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 105 LGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 777777544433333 332 46777777788888888876554455555556666666666777777776 4666777
Q ss_pred HHhHHCCCCCHHHHHHHHHHHhcCC
Q 043142 231 EKMKDEVQPDHITFVGVLSACSRGG 255 (512)
Q Consensus 231 ~~m~~~~~p~~~t~~~ll~a~~~~g 255 (512)
.++.+. ++...-...+.++...+
T Consensus 180 ~~~l~d--~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 180 EKLAET--GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHC--
T ss_pred HHHHhC--CCHHHHHHHHHHHHhcC
Confidence 776654 44445555555555544
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.17 E-value=47 Score=28.87 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=48.0
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCCch----HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc---hHHHHHHH
Q 043142 10 ATKLVHLYSACDCLHNAHQLFDRIPQRNLF----LWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF---TFPFALKA 82 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~ 82 (512)
.+..+...++.|+++....+++.-...+.. -++. +...++.|+.+ +++.+.+.|..|+.. ..+. +..
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~ 78 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATP-FLL 78 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCH-HHH
Confidence 345667778899999999888875543322 2333 44455667653 445555666665532 2222 333
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC
Q 043142 83 CSALSAIEEGRRIHEDVIRNKWET 106 (512)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~ 106 (512)
.+..|+.+ +.+.+++.|..+
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~ 98 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADV 98 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCT
T ss_pred HHHcCCHH----HHHHHHHcCCCC
Confidence 34455554 344445555444
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.72 E-value=72 Score=25.26 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 043142 328 AELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKK 376 (512)
Q Consensus 328 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 376 (512)
+..+|..+...+ ..-+..|...+..+...|++++|.++++.=.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777776543 4455667777777777777777777777766655443
No 284
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=56.00 E-value=52 Score=27.68 Aligned_cols=153 Identities=9% Similarity=-0.085 Sum_probs=70.5
Q ss_pred HHHHHHccCChHHHHHHHcc-CCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCC----CCCCcchHHHHHHHHh
Q 043142 13 LVHLYSACDCLHNAHQLFDR-IPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIG----LVPDNFTFPFALKACS 84 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~~~~ 84 (512)
.+...++.|+.+....+++. -.. +|..-++.|. ..+..|+.+-+..+++.-.... ...|..-.+.+. ..+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~-~A~ 83 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALH-IAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-IAV 83 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH-HHH
Confidence 34555678888888888876 222 3444444444 3455677655554444321110 011122233333 334
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhH---------------HHHHHHHHHhCCChHHHHHHHHhhhhCC-CChhHHHHHH
Q 043142 85 ALSAIEEGRRIHEDVIRNKWETDVFV---------------GAALIDMYAKCSCVVNARQVFDKILERD-PSEATLVTVI 148 (512)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~---------------~~~li~~~~~~g~~~~A~~~~~~m~~~~-pd~~t~~~ll 148 (512)
..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++.-...+ .|..-. +.+
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L 158 (232)
T 2rfa_A 84 INQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVL 158 (232)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHH
T ss_pred HcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHH
Confidence 456655 4444455565444321 1223334445566655555544311111 111111 223
Q ss_pred HHHhccCChHHHHHHHHHHHHcCC
Q 043142 149 SASADIAALPQGRELHGFSWRHRF 172 (512)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~g~ 172 (512)
...+..|+.+.+..+.+.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334445556555555566665554
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.91 E-value=67 Score=27.01 Aligned_cols=84 Identities=10% Similarity=0.020 Sum_probs=38.5
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCC
Q 043142 47 AYAWNGPYEVAIELYYRLLEIGLVPDNFT--FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCS 122 (512)
Q Consensus 47 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g 122 (512)
..++.|+.+-...+++.+...|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...++.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34556666666666665555554444321 112233334445554 3334444554433211 112333344566
Q ss_pred ChHHHHHHHHhh
Q 043142 123 CVVNARQVFDKI 134 (512)
Q Consensus 123 ~~~~A~~~~~~m 134 (512)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666555555543
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.39 E-value=91 Score=26.02 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchH
Q 043142 155 AALPQGRELHGFSWRHRFELN-VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~ 209 (512)
+.......+|..|...|+-.. ...|......+...|++.+|.++|+.-.++....
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677888888887776443 4566677777788888888888887765544433
No 287
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=55.21 E-value=3.1 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.1
Q ss_pred ceEEEeeCCcccccccccccCC
Q 043142 488 REITVRDVNRYHHFKDGICSCG 509 (512)
Q Consensus 488 ~~~~~~d~~~~h~~~~g~csc~ 509 (512)
+.|-+.|.+..|+|||||-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4577889999999999986543
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.48 E-value=48 Score=25.39 Aligned_cols=62 Identities=10% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCC--chHHHHHHHHHHHCCCC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGP--YEVAIELYYRLLEIGLV 70 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 70 (512)
..+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34678888888999999999999887652 2344445555555432 35677788888776654
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.45 E-value=66 Score=30.40 Aligned_cols=299 Identities=14% Similarity=0.145 Sum_probs=139.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhC
Q 043142 46 RAYAWNGPYEVAIELYYRLLEIGLVPDNFT--FPFALKACSALSAIEEGRRIHEDVIRNKWETDVF--VGAALIDMYAKC 121 (512)
Q Consensus 46 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 121 (512)
...+..|+.+- ++.+.+.|..|+... ..+.+...+..|+.+-+.. +++.|..++.. ...+.+...++.
T Consensus 19 ~~Aa~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 19 HVASFMGHLPI----VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp HHHHHHTCHHH----HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred HHHHHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 34456677654 444455666665432 2234455566677765544 44555443321 112344555677
Q ss_pred CChHHHHHHHHhhhhCC-CChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHH
Q 043142 122 SCVVNARQVFDKILERD-PSEATLVTVISASADIAALPQGRELHGFSWRHRFELNV--KVKTALVDMYAKCGLVKVARNL 198 (512)
Q Consensus 122 g~~~~A~~~~~~m~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~ 198 (512)
|+.+-+.-+++.-...+ .+.... +.+...+..|+.+....++ +.+..++. ....+.+...++.|+.+-+..+
T Consensus 91 g~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 91 GHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 88877666666532211 111112 2233344556666555444 44432221 1111234445678888888877
Q ss_pred HHhcCCCC---chHHHHHHHHHHHcCChHHHHHHHHHhHHCCC-CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 043142 199 FEQLREKR---VVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ-PDH---ITFVGVLSACSRGGLFDEGRMFFESMVRDY 271 (512)
Q Consensus 199 ~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 271 (512)
++.-...+ ...++.+ ...+..|+.+- ++.+.+.+. |+. ...+.+ ...+..|+.+-+..+++.
T Consensus 166 l~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~----- 234 (437)
T 1n11_A 166 LERDAHPNAAGKNGLTPL-HVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQY----- 234 (437)
T ss_dssp HHTTCCTTCCCSSCCCHH-HHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHHHT-----
T ss_pred HhCCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHc-----
Confidence 77544332 1222222 23345666543 333334443 322 223333 334456777665555442
Q ss_pred CCCCCh---hHHHHHHHHHhccCChHHHHHHHHhCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 043142 272 HIDPSV---QHYTCMVDLLGHSGRLDEACDLIMQMRVKP---DPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGN 345 (512)
Q Consensus 272 ~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 345 (512)
|..++. ...+ .+...++.|..+-...+++.- ..+ +...++. +...+..|+.+-+..+++.-...+..+..-
T Consensus 235 g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 311 (437)
T 1n11_A 235 GGSANAESVQGVT-PLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDATTRMG 311 (437)
T ss_dssp TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCCSSC
T ss_pred CCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCCCCCCC
Confidence 333321 1112 233345567766655555442 122 2222233 333446777776666665533333333222
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 043142 346 YVILSNIYARAANWEGVAKLRKLMIDRGIKK 376 (512)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 376 (512)
...| ...+..|+.+-+ +.+.+.|..+
T Consensus 312 ~t~L-~~A~~~g~~~~v----~~Ll~~gad~ 337 (437)
T 1n11_A 312 YTPL-HVASHYGNIKLV----KFLLQHQADV 337 (437)
T ss_dssp CCHH-HHHHHSSCSHHH----HHHHHTTCCT
T ss_pred CCHH-HHHHHcCcHHHH----HHHHhcCCCC
Confidence 2223 233456666543 4444555543
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.28 E-value=62 Score=28.52 Aligned_cols=93 Identities=8% Similarity=0.038 Sum_probs=47.5
Q ss_pred HHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhH
Q 043142 282 CMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEG 361 (512)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 361 (512)
+.+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+-+..+++.-...+..+..-....+......|+.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 334444556776666555555432223212334445556778888887777776555433322222212223344553
Q ss_pred HHHHHHHHHhCCCccCC
Q 043142 362 VAKLRKLMIDRGIKKSI 378 (512)
Q Consensus 362 a~~~~~~m~~~g~~~~~ 378 (512)
++.+.+.+.|..++.
T Consensus 209 --~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 --EMLQALFKYDINIYS 223 (285)
T ss_dssp --HHHHHHTTSCBCSTT
T ss_pred --HHHHHHHHcCCCCCC
Confidence 455566677765443
No 291
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.31 E-value=1.3e+02 Score=27.06 Aligned_cols=168 Identities=11% Similarity=0.015 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHH----HHHhHHCCC-CCHHHHHHHHHHHh
Q 043142 178 VKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDL----FEKMKDEVQ-PDHITFVGVLSACS 252 (512)
Q Consensus 178 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~-p~~~t~~~ll~a~~ 252 (512)
.+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+. ++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666788888888888876432 2334556666555543 444445566 77777777776665
Q ss_pred cCCCHH-HHHHHHHHHHH---hcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHhHHHHHHHHHHHc---C
Q 043142 253 RGGLFD-EGRMFFESMVR---DYHIDP--SVQHYTCMVDLLGHSGRLDEACDLIMQMRVKPDPGVWGALLNSCKLH---G 323 (512)
Q Consensus 253 ~~g~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g 323 (512)
....-+ .=..+.+.+++ +.|-.| ++.....+...|.+.|++.+|+..|-. +-.-|...+..++--+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 11222232221 112222 677788888888889999888887752 2111344555555444443 4
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 043142 324 HVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLRKLMID 371 (512)
Q Consensus 324 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 371 (512)
...++--+.-+ .+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 43333222211 22345567889999999887653
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.11 E-value=94 Score=24.94 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 043142 328 AELALEKLIELE--PHDAGNYVILSNIYARAANWEGVAKLRKLMIDRGIKK 376 (512)
Q Consensus 328 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 376 (512)
+..+|..|...+ ..-+..|...+..+...|++.+|.++|+.-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 566777777644 5566678888888888888888888888877766554
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.29 E-value=23 Score=28.21 Aligned_cols=62 Identities=10% Similarity=0.233 Sum_probs=39.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCC---chHHHHHHHHHHhcCC--chHHHHHHHHHHHCCCC
Q 043142 9 LATKLVHLYSACDCLHNAHQLFDRIPQRN---LFLWNVLIRAYAWNGP--YEVAIELYYRLLEIGLV 70 (512)
Q Consensus 9 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 70 (512)
..+.++.-|...|++++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 35677888888889999998888886652 2334444445544322 34566777777766544
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.65 E-value=62 Score=27.14 Aligned_cols=108 Identities=10% Similarity=0.070 Sum_probs=49.1
Q ss_pred HHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch---HHHHHHHHhccCCh
Q 043142 16 LYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT---FPFALKACSALSAI 89 (512)
Q Consensus 16 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~ 89 (512)
..++.|+++....+++.-... +..-++ .+...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 345678888877777764332 222222 333445566653 3344444554433221 11233333445555
Q ss_pred HHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHH
Q 043142 90 EEGRRIHEDVIRNKWETDVF--VGAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+ +.+.+++.|..++.. .....+...++.|+.+-+..+++
T Consensus 90 ~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 90 S----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred H----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 4 334444555443321 11123334445566554444444
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.79 E-value=1.1e+02 Score=24.86 Aligned_cols=177 Identities=10% Similarity=0.051 Sum_probs=81.4
Q ss_pred HHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 043142 28 QLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETD 107 (512)
Q Consensus 28 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 107 (512)
.+++.+..+|...-...+.++.+.|..+ +...+.++.. .++...-...+.++...++.+....+ ..++. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L-~~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPL-IKALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHHc---CCC
Confidence 3444445555555555555555555432 3333333332 23444444455555555544322222 22222 356
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 043142 108 VFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYA 187 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 187 (512)
..+-...+.++.+.|+.+....+.. +. .+++...-...+.++...++.+.... +..+.+ .++..+-...+.++.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~-~l-~d~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIK-AL-KDEDWFVRIAAAFALGEIGDERAVEP-LIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHH-HT-TCSSHHHHHHHHHHHHHHTCGGGHHH-HHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHH-HH-cCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHc---CCCHHHHHHHHHHHH
Confidence 6666666666666666433333333 32 23455555555666666555433222 222222 345556666666666
Q ss_pred hcCCHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 043142 188 KCGLVKVARNLFEQLREKRVVSWNAMITGYA 218 (512)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 218 (512)
+.|..+....+.+.+..++...-...+.++.
T Consensus 164 ~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 164 EIGGERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHCSHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6665433333333333344333333333433
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.40 E-value=1e+02 Score=25.60 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=30.2
Q ss_pred hHHHHHHHHhCCCCCCHh--HH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 043142 293 LDEACDLIMQMRVKPDPG--VW-----GALLNSCKLHGHVKLAELALEKLIELEPHDA 343 (512)
Q Consensus 293 ~~~A~~~~~~m~~~p~~~--~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 343 (512)
++.|+.+|+.++..-|.. .- -..+..|.+.|.+++|.+++++..+..+.+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 567777888775333311 11 2234558888999999999988877665544
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.09 E-value=66 Score=24.59 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCC--hHHHHHHHHHhHHCCC
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKRV---VSWNAMITGYAMHGH--STKALDLFEKMKDEVQ 238 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 238 (512)
.+.++.-|...|+.++|.+.++++..+.- +...++..++-+.+. .+.+..++..+...+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45677778888888888888888875532 334444555555432 3456677777766666
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.45 E-value=2.3e+02 Score=27.71 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-------hHHH-HHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 176 VKVKTALVDMYAKCGLVKVARNLFEQLREKRV-------VSWN-AMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 176 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
..++|.++..|...+.++.|..+..+..-|.. ..|. -+...+.-++++.+|.+.|.......+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 56788888999999999999999988765421 2222 234556778888899888888766544
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.10 E-value=55 Score=28.86 Aligned_cols=8 Identities=0% Similarity=0.119 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 043142 23 LHNAHQLF 30 (512)
Q Consensus 23 ~~~A~~~f 30 (512)
..+..+++
T Consensus 12 ~~~v~~lL 19 (285)
T 3kea_A 12 SKQLKSFL 19 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333433
No 300
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=44.56 E-value=6.7 Score=22.74 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=8.9
Q ss_pred cccccccCCCC
Q 043142 501 FKDGICSCGDY 511 (512)
Q Consensus 501 ~~~g~csc~~~ 511 (512)
-.+|.|||+-|
T Consensus 19 ~~~~~C~CG~y 29 (42)
T 2l0z_A 19 NSLGGCRCGKY 29 (42)
T ss_dssp CTTSSBTTTTB
T ss_pred cCCceeccccc
Confidence 45899999976
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.94 E-value=68 Score=28.93 Aligned_cols=232 Identities=11% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 043142 10 ATKLVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSAL 86 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 86 (512)
...++.-|-..|+.++|...++++..| ..+.-..+-.++-+...-.+....+-.-...++-+.......+...+...
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChH
Q 043142 87 SA--------IEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDPSEATLVTVISASADIAALP 158 (512)
Q Consensus 87 ~~--------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~ 158 (512)
.+ ++..-.++..++..++-|-..+....-.. .-..+.+++......=........+-+.....|...
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~-----~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~ 160 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQ 160 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTC-----CCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTS
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcc-----cchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCC
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCh--HHHHHHHHHh
Q 043142 159 QGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGHS--TKALDLFEKM 233 (512)
Q Consensus 159 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m 233 (512)
...++-.++ +.++.-|...|+.++|.+.++++..|. .+...++..++-+.++. +....++..+
T Consensus 161 ~~eelkkki------------~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L 228 (307)
T 2zu6_B 161 SVNHLVKEI------------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSL 228 (307)
T ss_dssp CHHHHHHHH------------HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHH------------HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q ss_pred HHCCC-CCHHHHHHHHHHHhcCCCHH
Q 043142 234 KDEVQ-PDHITFVGVLSACSRGGLFD 258 (512)
Q Consensus 234 ~~~~~-p~~~t~~~ll~a~~~~g~~~ 258 (512)
...+. +.......+...+....++.
T Consensus 229 ~~~~~ls~~q~~~Gf~~vl~~l~Dl~ 254 (307)
T 2zu6_B 229 WKSSTITVDQMKRGYERIYNEIPDIN 254 (307)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHhccHhh
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.64 E-value=1.1e+02 Score=26.17 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHC--CCCC----CcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 043142 43 VLIRAYAWNGPYEVAIELYYRLLEI--GLVP----DNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALID 116 (512)
Q Consensus 43 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (512)
--++.+....++++|+++.++..+. ++++ +.......+..-.....-..+..+.+.+ .. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467888899999999998876432 2332 1122233333333333333344444444 22 344555556667
Q ss_pred HHHhCCChHHHHHHHHhhh
Q 043142 117 MYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~ 135 (512)
.+.+.|+-+.|..+|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7788888888888886653
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.24 E-value=1.6e+02 Score=24.92 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCChHHHHHHHHhhhh
Q 043142 92 GRRIHEDVIRNKWET-DVFVGAALIDMYAKCSCVVNARQVFDKILE 136 (512)
Q Consensus 92 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (512)
..++|..|...|+.. -...|-.....+-..|++.+|..+|+.-.+
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444332 233344444444445555555555544443
No 304
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.12 E-value=40 Score=24.31 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHH
Q 043142 190 GLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKAL 227 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 227 (512)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 47889999999999999999999999998777765543
No 305
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.24 E-value=81 Score=26.31 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=52.0
Q ss_pred HHHHHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc---hHHHHHHHHhc
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF---TFPFALKACSA 85 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~ 85 (512)
.+...++.|+++....+++.-+. +|...++.|. ..+..|+.+ +++.+.+.|..++.. ..+.+. ..+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLH-IAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHH-HHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHH-HHHH
Confidence 35556678888888888766432 3333344443 334555543 344444556554432 223333 3334
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHH
Q 043142 86 LSAIEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 132 (512)
.|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45554 3444455554432211 1122333445566554444443
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.17 E-value=2.8e+02 Score=29.64 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=72.0
Q ss_pred HHHHHHccCChHHHHHHHccCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHH
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEG 92 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 92 (512)
++..+...|..+-|.++....+. +...--.+..+|...|++++|..+|++.- .|+.++....... +..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------REF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------HHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------hhh
Confidence 66667778888888877766664 44333456677888999999999998763 2443322211100 011
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-CC-Ch----hHHHHHHHHHhcc
Q 043142 93 RRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-DP-SE----ATLVTVISASADI 154 (512)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p-d~----~t~~~ll~~~~~~ 154 (512)
..++... +. -.....-|..++..+-+.+.++.+.++-+...+. .+ |. ..|+.+..+.+..
T Consensus 884 ~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 884 QEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 1111100 00 0112236777888888888888877776665542 11 11 2355666665543
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.68 E-value=1.4e+02 Score=23.60 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchH
Q 043142 159 QGRELHGFSWRHRFELN-VKVKTALVDMYAKCGLVKVARNLFEQLREKRVVS 209 (512)
Q Consensus 159 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~ 209 (512)
....+|..|..+|+-.. ...|......+-..|++++|.++|+.-.+++...
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36777777777765433 3455666666777777777777777655444433
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.01 E-value=34 Score=24.64 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHH
Q 043142 53 PYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGR 93 (512)
Q Consensus 53 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 93 (512)
..++|.++++.+...|. .+|..++.++...++...|.
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHH
Confidence 45556666665555431 24555555555545544443
No 309
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.57 E-value=2.3e+02 Score=25.58 Aligned_cols=107 Identities=10% Similarity=0.015 Sum_probs=55.2
Q ss_pred HHhCCChHHHHHHHHhhhhCCC--------ChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 043142 118 YAKCSCVVNARQVFDKILERDP--------SEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTALVDMYAKC 189 (512)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~~p--------d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 189 (512)
+.+.|++++|+..|+.+...-| +......++..|.. +-.|..+ ++.+..++.+...-+.-+.+|.-+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrE---Yilal~i--El~Rr~l~~~~~kR~lELAAYFT~ 198 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETARE---YILGLSI--ELERRSLKEGNTVRMLELAAYFTK 198 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHH---HHHHHHH--HHHHHTCCTTCHHHHHHHHHHGGG
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHhcCcccHHHHHHHHHHhcc
Confidence 3678999999999988753210 00111122222110 0111111 222233333333344444444444
Q ss_pred CCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCC
Q 043142 190 GLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQ 238 (512)
Q Consensus 190 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 238 (512)
-+++-...+ .+...-|....+.+++..|..+-+++.+.++
T Consensus 199 c~LQp~H~~---------LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 199 AKLSPIHRT---------NALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp SCCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCCcHHHHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 333333222 2455566777888999999999999887766
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=36.89 E-value=65 Score=27.12 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=10.3
Q ss_pred HHHHHccCChHHHHHHHcc
Q 043142 14 VHLYSACDCLHNAHQLFDR 32 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~ 32 (512)
+...++.|+.+-...+++.
T Consensus 15 L~~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHc
Confidence 3444455666655555554
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.71 E-value=71 Score=25.29 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCC--hHHHHHHHHHhHHCCC
Q 043142 179 KTALVDMYAKCGLVKVARNLFEQLREKR---VVSWNAMITGYAMHGH--STKALDLFEKMKDEVQ 238 (512)
Q Consensus 179 ~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 238 (512)
.+.++.-|...|+.++|...++++..+. .+...++..++-+.+. -+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567777888888888888888886553 2334444555554322 3456667777766665
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.44 E-value=1.1e+02 Score=29.95 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-CCC---hhHHHHHHHHHhccCChHHHHHHHHhC
Q 043142 242 ITFVGVLSACSRGGLFDEGRMFFESMVRDYHI-DPS---VQHYTCMVDLLGHSGRLDEACDLIMQM 303 (512)
Q Consensus 242 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m 303 (512)
..++.++..|...+.+++|..+..+.. -... .++ ..-+-.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445666666667777777777666552 1000 011 011112334455566666666665544
No 313
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=34.98 E-value=1.2e+02 Score=21.41 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHH
Q 043142 161 RELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKA 226 (512)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 226 (512)
..+++.+.+.|+-.... +..+- +.....++|.++++.+.+++..++..++.++...+...-|
T Consensus 25 ~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34566666666433222 22111 2357788999999999999999999999998887764433
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.18 E-value=3.2e+02 Score=26.21 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCChHHHHHHHH
Q 043142 155 AALPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLRE---KRVVSWNAMITGYAMHGHSTKALDLFE 231 (512)
Q Consensus 155 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 231 (512)
.+.+.|.++ +.+.|++-....|..-.+.+...|++++|-++--..++ ++..+.+.+-..=.+.|+..-.+.+|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 444444433 34556666666666667777788888888777665543 233333333332233344445555555
Q ss_pred HhHHCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC
Q 043142 232 KMKDEVQPDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLDEACDLIMQMR 304 (512)
Q Consensus 232 ~m~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (512)
.+.+.+..+..-=.-+++.-...|+.+..++.+ ++..+..+...-..+ +..+..-|+.+|.+.+
T Consensus 420 ~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl----~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 420 ILLDQGQLNKYESLELCRPVLQQGRKQLLEKWL----KEDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH----HHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHhccCccchHHhhHHhHHHHhccHHHHHHHHH----hcCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 555555433332233344444444443333322 222444444322222 3334555555555553
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.08 E-value=93 Score=25.92 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=12.3
Q ss_pred HHHHHhcCCchHHHHHHHH
Q 043142 45 IRAYAWNGPYEVAIELYYR 63 (512)
Q Consensus 45 i~~~~~~g~~~~A~~~~~~ 63 (512)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455667777777666655
No 316
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.69 E-value=1.7e+02 Score=26.56 Aligned_cols=19 Identities=5% Similarity=-0.036 Sum_probs=9.9
Q ss_pred HHHHHhCCChHHHHHHHHh
Q 043142 115 IDMYAKCSCVVNARQVFDK 133 (512)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~ 133 (512)
+...+..|+.+-+..+++.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3334455666555555554
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.77 E-value=1.3e+02 Score=23.42 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=24.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 294 (512)
++..+...+..-.|.++++.+.++ +...+..|..--++.+...|-+.
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 344444444455566666666433 33334445455556666666543
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.30 E-value=1.3e+02 Score=25.16 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=28.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHH
Q 043142 80 LKACSALSAIEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+...+..|+.+....+++.+.+.|..++..- ..+.+...+..|+.+-+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344556788877777776666664443221 1223444455666655544444
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.61 E-value=1.6e+02 Score=23.74 Aligned_cols=91 Identities=9% Similarity=0.040 Sum_probs=50.0
Q ss_pred HHccCChHHHHHHHccCCCC-C-chHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc---hHHHHHHHHhc-cCChH
Q 043142 17 YSACDCLHNAHQLFDRIPQR-N-LFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNF---TFPFALKACSA-LSAIE 90 (512)
Q Consensus 17 y~~~g~~~~A~~~f~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~-~~~~~ 90 (512)
.++.|+++....+++.-... + ..-++. +...+..|+.+.-.++.+.+++.|..|+.. -.+.|..++.. ..+..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~-Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKSNI-LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTTTH-HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCCCH-HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 35678888877777654321 1 112333 334455666665566777777777766643 23333333322 23344
Q ss_pred HHHHHHHHHHHhCCCCCh
Q 043142 91 EGRRIHEDVIRNKWETDV 108 (512)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~ 108 (512)
...++.+.+++.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 455667777777765543
No 320
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.56 E-value=71 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=10.7
Q ss_pred HHHHccCChHHHHHHHcc
Q 043142 15 HLYSACDCLHNAHQLFDR 32 (512)
Q Consensus 15 ~~y~~~g~~~~A~~~f~~ 32 (512)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 344456666666666655
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.70 E-value=2.4e+02 Score=23.79 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhCCCCChh-------HHHHHHHHHHhCCChHHHHHHHHhhhhCCCC
Q 043142 89 IEEGRRIHEDVIRNKWETDVF-------VGAALIDMYAKCSCVVNARQVFDKILERDPS 140 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~pd 140 (512)
++.|..+|+.+.+.-.-++.. +--..+-.|.+.|.+++|.++|++....+|+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s 146 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPT 146 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCC
Confidence 567788888777654212211 1223456788899999999999988776543
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.66 E-value=1.1e+02 Score=27.94 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhh
Q 043142 111 GAALIDMYAKCSCVVNARQVFDKIL 135 (512)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~ 135 (512)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456666777777777777777664
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.57 E-value=1.4e+02 Score=27.19 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=52.1
Q ss_pred HHHHHHHHccCChHHHHHHHccCCCC---CchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 043142 11 TKLVHLYSACDCLHNAHQLFDRIPQR---NLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALS 87 (512)
Q Consensus 11 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 87 (512)
.+.+...++.|+++-+..+++.-..+ |..-++.|. ..+..|+.+- .+.+.+.|..++...-.+.+...+..|
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH-LACKFGCVDT----AKYLASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHCCHHH----HHHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHH-HHHHcCCHHH----HHHHHHCCCCccccCCCCHHHHHHHcC
Confidence 34455666789999999888874433 333344444 3445666543 333444455555432233444455678
Q ss_pred ChHHHHHHHHHHHHhCCCC
Q 043142 88 AIEEGRRIHEDVIRNKWET 106 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~ 106 (512)
+.+-+..+++.....|..+
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHhccccCCCH
Confidence 8887777777655555443
No 324
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=29.20 E-value=39 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.013 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHHHHHHHccc
Q 043142 400 PNCDEIYAKLKWLEGRMKEAGYVPGTESVFHDVENDEKANMICCHSERLAIAFGLI 455 (512)
Q Consensus 400 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 455 (512)
++..++...+++-..+++..|+.||...+-. +...+.++.+...||=.
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~e 60 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEEE 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhccc
Confidence 4556677778888899999999999865422 22234455666667643
No 325
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.06 E-value=2.8e+02 Score=23.89 Aligned_cols=18 Identities=11% Similarity=-0.081 Sum_probs=7.2
Q ss_pred CchHHHHHHHHHHHhcCC
Q 043142 174 LNVKVKTALVDMYAKCGL 191 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~ 191 (512)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 326
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.04 E-value=1.1e+02 Score=25.60 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=35.8
Q ss_pred cCChHHHHHHHHhCCCCCCHh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChhHHHHHH
Q 043142 290 SGRLDEACDLIMQMRVKPDPG---VWGALLNSCKLHGHVKLAELALEKLIELEPHDAGNYVILSNIYARAANWEGVAKLR 366 (512)
Q Consensus 290 ~g~~~~A~~~~~~m~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (512)
.+...+..+++.+.+..++.. .-.+.+...+..|+.+-+..+++.-...+..+..-. .-+....+.|+.+-+.-++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHH
Confidence 344444555555554332211 112344455567777766665554322221121111 1233445666666555555
Q ss_pred HHHHhC
Q 043142 367 KLMIDR 372 (512)
Q Consensus 367 ~~m~~~ 372 (512)
+...+.
T Consensus 231 ~~~~~~ 236 (240)
T 3eu9_A 231 EARQAK 236 (240)
T ss_dssp HHC---
T ss_pred Hhhhcc
Confidence 544433
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.58 E-value=62 Score=27.82 Aligned_cols=51 Identities=10% Similarity=-0.098 Sum_probs=25.5
Q ss_pred HHHHHccCChHHHHHHHc----cCCCCC-------chHHHHHHHHHH--hcCCchHHHHHHHHH
Q 043142 14 VHLYSACDCLHNAHQLFD----RIPQRN-------LFLWNVLIRAYA--WNGPYEVAIELYYRL 64 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~----~~~~~~-------~~~~~~li~~~~--~~g~~~~A~~~~~~m 64 (512)
+...++.|+.+....+++ .-...+ ..-++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334456677776666655 222222 223444444332 456666665555543
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.18 E-value=1.3e+02 Score=23.27 Aligned_cols=60 Identities=13% Similarity=-0.038 Sum_probs=32.1
Q ss_pred HHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 64 LLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 64 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|----++.+...|-+
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 45556655432 2334444444444555667777766665444554444455666666643
No 329
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.28 E-value=1.8e+02 Score=23.28 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=8.1
Q ss_pred HHHHHHHHhCCCcc
Q 043142 363 AKLRKLMIDRGIKK 376 (512)
Q Consensus 363 ~~~~~~m~~~g~~~ 376 (512)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 55566666666543
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.14 E-value=1.5e+02 Score=25.28 Aligned_cols=25 Identities=16% Similarity=-0.103 Sum_probs=13.5
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCC
Q 043142 48 YAWNGPYEVAIELYYRLLEIGLVPD 72 (512)
Q Consensus 48 ~~~~g~~~~A~~~~~~m~~~g~~p~ 72 (512)
.++.|+.+....+++.+...|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3455666655555555555554444
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.00 E-value=3.7e+02 Score=24.69 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Q 043142 245 VGVLSACSRGGLFDEGRMFFESM 267 (512)
Q Consensus 245 ~~ll~a~~~~g~~~~a~~~~~~~ 267 (512)
..++.-|...++.++|.+.++.+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL 243 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKEL 243 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHc
Confidence 44445555555555555555554
No 332
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=26.71 E-value=1.6e+02 Score=25.76 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHccC--------------CCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 043142 7 PVLATKLVHLYSACDCLHNAHQLFDRI--------------PQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPD 72 (512)
Q Consensus 7 ~~~~~~Li~~y~~~g~~~~A~~~f~~~--------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 72 (512)
.....+.+...+..|+.++..+..... ..+|..-++.|. ..+..|+.+ +++.+.+.|..++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g~~~----~v~~Ll~~g~~~~ 86 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHGHQL----SLRNLISQGWAVN 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTTCHH----HHHHHHHTTCCSC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcCCHH----HHHHHHHCCCCCC
Confidence 345566777788888887777744332 123444444444 345566654 3444445565554
Q ss_pred cc---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 043142 73 NF---TFPFALKACSALSAIEEGRRIHEDVIRNKWET 106 (512)
Q Consensus 73 ~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 106 (512)
.. -.+. +...+..|+.+-+ +.+++.|..+
T Consensus 87 ~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~ 118 (285)
T 3d9h_A 87 IITADHVSP-LHEACLGGHLSCV----KILLKHGAQV 118 (285)
T ss_dssp EECTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCS
T ss_pred CcCCCCCCH-HHHHHHCCcHHHH----HHHHHCCCCC
Confidence 32 2233 3334455665543 3444455443
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.68 E-value=2.5e+02 Score=22.50 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 043142 55 EVAIELYYRLLEIGLVPDNF-TFPFALKACSALSAIEEGRRIHEDVIRNKWETDV 108 (512)
Q Consensus 55 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 108 (512)
+++.++|..|...|+--... -|......+-..|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34666777777766654332 3555555566667777777777777776655543
No 334
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.30 E-value=3.9e+02 Score=28.51 Aligned_cols=125 Identities=10% Similarity=-0.066 Sum_probs=66.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHhhhhC-C-CChhHHHHHHHHHhccCC
Q 043142 79 ALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILER-D-PSEATLVTVISASADIAA 156 (512)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-pd~~t~~~ll~~~~~~~~ 156 (512)
++..|...+..+.+.++... .+.++..--.+..+|..+|++++|...|++.-.. . ++.... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~-----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA-----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG-----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc-----------c
Confidence 55566666766665554322 3445544455677888999999999999876421 0 110000 0
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCc----hHHHHHHHHHHHcC
Q 043142 157 LPQGRELHGFSWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQ----LREKRV----VSWNAMITGYAMHG 221 (512)
Q Consensus 157 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----m~~~~~----~~~~~li~~~~~~g 221 (512)
......+.... ..-.....-|..++..+-+.+.++-+.+.-+. +...|. ..|+.+..+.+..|
T Consensus 880 ~~~~~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00000111000 00011223677788888888888776655443 333332 35777777766544
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.28 E-value=2.1e+02 Score=24.25 Aligned_cols=26 Identities=15% Similarity=-0.164 Sum_probs=14.8
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCC
Q 043142 47 AYAWNGPYEVAIELYYRLLEIGLVPD 72 (512)
Q Consensus 47 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 72 (512)
..++.|+.+....+++.+...|..++
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 34556666666566666655555444
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.91 E-value=1.8e+02 Score=22.74 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=21.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 043142 247 VLSACSRGGLFDEGRMFFESMVRDYHIDPSVQHYTCMVDLLGHSGRL 293 (512)
Q Consensus 247 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 293 (512)
++..+...+..-.|.++++.+.++ +...+..|..--++.+...|-+
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 344444444444555566655433 2233444444445555555554
No 337
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.79 E-value=16 Score=21.38 Aligned_cols=10 Identities=20% Similarity=0.972 Sum_probs=8.6
Q ss_pred ccccCCcchh
Q 043142 468 NLKICDDCHI 477 (512)
Q Consensus 468 ~~~~~~~~~~ 477 (512)
++|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 6899999974
No 338
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.47 E-value=2.7e+02 Score=23.78 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=16.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHH
Q 043142 79 ALKACSALSAIEEGRRIHEDVIR 101 (512)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~ 101 (512)
-+..+....++++|.++.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667778888888888776654
No 339
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.90 E-value=3.2e+02 Score=23.16 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHHCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 043142 224 TKALDLFEKMKDEVQ--PDHITFVGVLSACSRGGLFDEGRMFFESMVRDYHIDP 275 (512)
Q Consensus 224 ~~A~~~~~~m~~~~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 275 (512)
+++.++|..|...++ --..-|..-...+...|++.+|..+|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 466778888887777 45556667777777788888888888877654 5556
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.30 E-value=4e+02 Score=24.14 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCC
Q 043142 10 ATKLVHLYSACDCLHNAHQLFDRIPQR 36 (512)
Q Consensus 10 ~~~Li~~y~~~g~~~~A~~~f~~~~~~ 36 (512)
.+.++.-|...|++++|.+.++++..|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 456777788888888888888888765
No 341
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=24.05 E-value=2.6e+02 Score=21.94 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=10.3
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHHh
Q 043142 25 NAHQLFDRIPQRNLFLWNVLIRAYAW 50 (512)
Q Consensus 25 ~A~~~f~~~~~~~~~~~~~li~~~~~ 50 (512)
+..+.|+........++.-+..++..
T Consensus 22 ~l~~~fd~~d~~G~i~~~e~~~~l~~ 47 (183)
T 1s6c_A 22 VLYRGFKNEXPSGVVNEETFKQIYAQ 47 (183)
T ss_dssp HHHHHHHHHCTTSEECHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 34444444322233444444444433
No 342
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.37 E-value=3.2e+02 Score=22.68 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=34.8
Q ss_pred HHHHHHHH---hcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 043142 42 NVLIRAYA---WNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSA-----IEEGRRIHEDVIRNKW 104 (512)
Q Consensus 42 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 104 (512)
-.+|+++. +..+++.|+-.+-+|++.| .|.-..-..++-+.-.-|. +..|...++.....|.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34555654 4578888888888888888 5544333333333333332 2334445555555564
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.29 E-value=1.6e+02 Score=23.46 Aligned_cols=69 Identities=9% Similarity=0.087 Sum_probs=36.9
Q ss_pred HHHHHHHH-hHHCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhccCChH
Q 043142 225 KALDLFEK-MKDEVQ-PDHITFVGVLSACSRGGLFDEGRMFFESMVRDY-HIDPSVQHYTCMVDLLGHSGRLD 294 (512)
Q Consensus 225 ~A~~~~~~-m~~~~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 294 (512)
.+++-+.+ +.+.|. ++. .-..++..+...+..-.|.++++.+.++. +...+..|.---++.+...|-+.
T Consensus 15 ~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34443433 334455 433 23445566666666667777777775431 22334444445566777777654
No 344
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.23 E-value=1.8e+02 Score=22.71 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=33.4
Q ss_pred HHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 63 RLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 63 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
.+.+.|++++. .=..++..+...+..-.|.++++.+.+.+...+..|----++.+...|-+
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34556665443 23334455555555566777777777666555555544556666666654
No 345
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.03 E-value=3e+02 Score=22.14 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCChHHHHHHHHHhHHCCCCCHHHHHHHHHHHhc
Q 043142 174 LNVKVKTALVDMYAKCGLVKVARNLFEQLREKRVVSWNAMITGYAMHGHSTKALDLFEKMKDEVQPDHITFVGVLSACSR 253 (512)
Q Consensus 174 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~a~~~ 253 (512)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+.++... ++...-...+.++..
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d--~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD--EDGWVRQSAADALGE 164 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC--SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 44455555555555555544333344444444444434444455554443 233333333221 444444445555555
Q ss_pred CCCHHHHHHHHHHH
Q 043142 254 GGLFDEGRMFFESM 267 (512)
Q Consensus 254 ~g~~~~a~~~~~~~ 267 (512)
.|.. ++...+..+
T Consensus 165 ~~~~-~~~~~L~~~ 177 (201)
T 3ltj_A 165 IGGE-RVRAAMEKL 177 (201)
T ss_dssp HCSH-HHHHHHHHH
T ss_pred hCch-hHHHHHHHH
Confidence 5442 333334433
No 346
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.93 E-value=2.6e+02 Score=21.45 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=52.7
Q ss_pred HHHHHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH--HHHHHHHhcc
Q 043142 13 LVHLYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF--PFALKACSAL 86 (512)
Q Consensus 13 Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~ 86 (512)
.+...++.|+++....+++.-.. ++..-++.|. ..+..|+. ++++.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 34455677888888888875331 2222233343 34455664 444555556665553321 1223333445
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHH
Q 043142 87 SAIEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 132 (512)
++.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6555 3344455554443211 1122333445555554444443
No 347
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.91 E-value=84 Score=23.62 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh
Q 043142 60 LYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHEDVIRN 102 (512)
Q Consensus 60 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 102 (512)
+|+.+....+.|+...--.-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555555544433333344456678888888888777653
No 348
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.89 E-value=16 Score=18.26 Aligned_cols=13 Identities=46% Similarity=1.584 Sum_probs=8.4
Q ss_pred ccccccc--cCCCCC
Q 043142 500 HFKDGIC--SCGDYW 512 (512)
Q Consensus 500 ~~~~g~c--sc~~~w 512 (512)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5677777 466655
No 349
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=22.29 E-value=2.7e+02 Score=21.50 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHccCChHHHHHHHccCCC----CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccC
Q 043142 14 VHLYSACDCLHNAHQLFDRIPQ----RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFT--FPFALKACSALS 87 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 87 (512)
+...++.|+++....+++.-.. +|..-++.|.. .+..|+.+- ++.+.+.|..++... -.+.+...+..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIET----VRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH-HHHTTCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH-HHHcCCHHH----HHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 3445677888888888876532 34444444443 345566533 333344454444321 112233344455
Q ss_pred ChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHH
Q 043142 88 AIEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 132 (512)
+.+- .+.+++.|..++... ..+.+...++.|+.+-+..+++
T Consensus 81 ~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (172)
T 3v30_A 81 YTDI----VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123 (172)
T ss_dssp CHHH----HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 5543 334445554433211 1122333445566655554444
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.85 E-value=2.2e+02 Score=21.69 Aligned_cols=60 Identities=8% Similarity=0.010 Sum_probs=28.8
Q ss_pred HHHCCCCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 64 LLEIGLVPDNFTFPFALKACSALS-AIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 64 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
+.+.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|----++.+.+.|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44455554432 223344444443 4445666666666555444444444445555555543
No 351
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.74 E-value=2.1e+02 Score=26.03 Aligned_cols=82 Identities=7% Similarity=-0.068 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHCC---CCCCcch---HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 043142 55 EVAIELYYRLLEIG---LVPDNFT---FPFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNAR 128 (512)
Q Consensus 55 ~~A~~~~~~m~~~g---~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 128 (512)
++|..+|..+...- ..++... ....+..+.+.-+ -+++..+.+.|+.|...++.-++..+++.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 46777787776541 1222111 1122222222222 247777888888888888888888898888899999
Q ss_pred HHHHhhhhCCCC
Q 043142 129 QVFDKILERDPS 140 (512)
Q Consensus 129 ~~~~~m~~~~pd 140 (512)
++|+.+...++.
T Consensus 265 rlWD~~l~~g~~ 276 (345)
T 2qfz_A 265 RLWDTYQSEPDG 276 (345)
T ss_dssp HHHHHHTTSTTT
T ss_pred HHHHHHHhCCCC
Confidence 999999877644
No 352
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.14 E-value=98 Score=19.91 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 043142 54 YEVAIELYYRLLEIGLVPDNFTFPFALKAC 83 (512)
Q Consensus 54 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 83 (512)
.++|.+.|.+|++..-.+...||.-.++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888886553333455787777766
No 353
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.93 E-value=1e+02 Score=21.78 Aligned_cols=36 Identities=14% Similarity=-0.046 Sum_probs=17.9
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChH
Q 043142 51 NGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIE 90 (512)
Q Consensus 51 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 90 (512)
....++|..+++.+...| ...|..++.++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 344555556665554432 234555555555544433
No 354
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.84 E-value=4e+02 Score=22.82 Aligned_cols=180 Identities=13% Similarity=-0.005 Sum_probs=87.1
Q ss_pred cCCCCCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCh----HHHHHHHHHHHHhCCCCC
Q 043142 32 RIPQRNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAI----EEGRRIHEDVIRNKWETD 107 (512)
Q Consensus 32 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~ 107 (512)
.+..+|...-..-+.++.+.|. ..+...+..+... ++...-...+.++...+.. .....++...... .++
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~ 104 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKS 104 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSC
T ss_pred HHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCC
Confidence 3444555444445556666664 4455655555542 4544445555666666532 2222333322122 456
Q ss_pred hhHHHHHHHHHHhCCC-----hHHHHHHHHhhhhCCCChhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 043142 108 VFVGAALIDMYAKCSC-----VVNARQVFDKILERDPSEATLVTVISASADIAALPQGRELHGFSWRHRFELNVKVKTAL 182 (512)
Q Consensus 108 ~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 182 (512)
..+-...+.++.+.+. ...+...+..+.. +|+...-...+.+....++.+ +...+..+.+ .++..+-...
T Consensus 105 ~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 179 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWA 179 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 6666666776666552 3345555544433 466666666777777776643 2223333332 3455555555
Q ss_pred HHHHHhcC-CHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCC
Q 043142 183 VDMYAKCG-LVKVARN-LFEQLREKRVVSWNAMITGYAMHGH 222 (512)
Q Consensus 183 i~~y~~~g-~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~ 222 (512)
+.+..+.| .-..+.. +...+..++...-...+.++.+.|.
T Consensus 180 ~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 180 AFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 55555544 1223333 3333334444444444455555554
No 355
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.42 E-value=3e+02 Score=21.15 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHccCChHHHHHHHccCCC---CCchHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchH--HHHHHHHhccCC
Q 043142 14 VHLYSACDCLHNAHQLFDRIPQ---RNLFLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTF--PFALKACSALSA 88 (512)
Q Consensus 14 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~ 88 (512)
+...++.|+++....+++.-.. +|..-++.|. ..+..|+. ++++.+.+.|..|+.... .+.+...+..++
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM-WAAAHGQI----AVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHH-HHHHCCCH----HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 3444567888888877776432 3333344444 33455654 344444455655543211 122333344455
Q ss_pred hHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHH
Q 043142 89 IEEGRRIHEDVIRNKWETDVFV--GAALIDMYAKCSCVVNARQVFD 132 (512)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 132 (512)
.+-+ +.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 82 ~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 82 TDIV----KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123 (167)
T ss_dssp HHHH----HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH----HHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 5433 33444454433211 1122333345566555444443
No 356
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=20.38 E-value=3.1e+02 Score=21.45 Aligned_cols=8 Identities=13% Similarity=0.077 Sum_probs=3.0
Q ss_pred HHHHHHhC
Q 043142 296 ACDLIMQM 303 (512)
Q Consensus 296 A~~~~~~m 303 (512)
+..+|+.+
T Consensus 142 ~~~~f~~~ 149 (183)
T 1s6c_A 142 VDVFFQKM 149 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 357
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=20.32 E-value=4.5e+02 Score=23.28 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=65.8
Q ss_pred CchHHHHHHHHHHHCCCCCCcch--HHHH------HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 53 PYEVAIELYYRLLEIGLVPDNFT--FPFA------LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 53 ~~~~A~~~~~~m~~~g~~p~~~t--~~~l------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
.-++|..+|..+...-..++.++ ...+ +..+.+..+ -+++..+.+.|+.|...+..-++..+++.=.+
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 205 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL----PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPL 205 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC----hHHHHHHHHcCCChHHHHHHHHHHHHhccCCH
Confidence 45678888888765422223222 1111 222222222 34777778888888888888888888888788
Q ss_pred HHHHHHHHhhhhCCCChhHHHHH--HHHH---hccCChHHHHHHHH
Q 043142 125 VNARQVFDKILERDPSEATLVTV--ISAS---ADIAALPQGRELHG 165 (512)
Q Consensus 125 ~~A~~~~~~m~~~~pd~~t~~~l--l~~~---~~~~~~~~a~~~~~ 165 (512)
+.+.++++.+...++....+..+ +..+ .-..+.+...+.+.
T Consensus 206 ~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 206 CMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888777655433222 1111 01236777777665
No 358
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.25 E-value=1.5e+02 Score=22.54 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=20.4
Q ss_pred HHHHHHcCChHHHHHHHHHhHHCCC-CCHHHHHHHHHHHhcCC
Q 043142 214 ITGYAMHGHSTKALDLFEKMKDEVQ-PDHITFVGVLSACSRGG 255 (512)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~a~~~~g 255 (512)
+..+...+.+-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444455555555555544 44444444444444444
No 359
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.05 E-value=2.4e+02 Score=25.59 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHCC-----CCCCcchH---HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 043142 53 PYEVAIELYYRLLEIG-----LVPDNFTF---PFALKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCV 124 (512)
Q Consensus 53 ~~~~A~~~~~~m~~~g-----~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (512)
.-++|..+|..+...- ..|+.... ...+..+.+..+ -+++..+.+.|+.|...++.-++..+++.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL----PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 4467888887765431 22333222 222233333222 24677778888888888888888888888888
Q ss_pred HHHHHHHHhhhhCCC
Q 043142 125 VNARQVFDKILERDP 139 (512)
Q Consensus 125 ~~A~~~~~~m~~~~p 139 (512)
+.+.++++.+...++
T Consensus 245 ~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 245 DLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999988877654
Done!