Query 043144
Match_columns 580
No_of_seqs 829 out of 3279
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 13:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1E-66 2.3E-71 547.1 64.3 483 84-570 370-881 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.8E-66 3.9E-71 545.4 61.8 486 81-572 403-916 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-65 2.2E-70 538.1 53.7 484 83-579 86-571 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 4.5E-65 9.7E-70 546.1 55.4 506 59-579 226-734 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 7E-65 1.5E-69 544.6 53.9 488 60-562 126-651 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-60 3.7E-65 498.8 46.7 479 79-573 118-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-32 3.3E-37 302.1 60.8 470 85-568 398-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-31 2.4E-36 295.2 62.5 469 85-567 364-834 (899)
9 PRK11447 cellulose synthase su 100.0 2.6E-25 5.6E-30 244.9 58.5 467 88-568 116-703 (1157)
10 PRK11447 cellulose synthase su 100.0 2.4E-24 5.2E-29 237.4 56.6 467 85-564 182-739 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 5.3E-24 1.1E-28 199.1 38.1 445 86-546 50-500 (966)
12 KOG2002 TPR-containing nuclear 99.9 5.3E-23 1.2E-27 202.4 41.2 470 14-508 255-758 (1018)
13 KOG4626 O-linked N-acetylgluco 99.9 2.5E-23 5.3E-28 194.6 36.0 441 122-577 51-497 (966)
14 PRK09782 bacteriophage N4 rece 99.9 2.2E-21 4.9E-26 204.2 54.4 462 85-569 79-710 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-21 9.1E-26 198.9 51.4 428 87-530 130-571 (615)
16 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-21 1.4E-25 197.5 52.7 431 121-567 129-573 (615)
17 PRK09782 bacteriophage N4 rece 99.9 3.2E-19 6.8E-24 188.2 57.3 454 92-570 52-677 (987)
18 PRK15174 Vi polysaccharide exp 99.9 3.5E-20 7.5E-25 191.3 45.2 331 87-426 45-382 (656)
19 PRK10049 pgaA outer membrane p 99.9 1.9E-19 4.1E-24 189.9 51.6 412 121-544 17-468 (765)
20 PRK11788 tetratricopeptide rep 99.9 3.6E-21 7.9E-26 189.6 36.2 299 267-572 46-354 (389)
21 KOG2002 TPR-containing nuclear 99.9 4E-20 8.8E-25 182.3 42.4 479 83-568 269-801 (1018)
22 PRK11788 tetratricopeptide rep 99.9 4.9E-21 1.1E-25 188.7 35.5 59 260-319 111-169 (389)
23 PRK15174 Vi polysaccharide exp 99.9 1.2E-19 2.7E-24 187.2 46.6 358 94-460 15-381 (656)
24 PRK10049 pgaA outer membrane p 99.9 2.8E-19 6E-24 188.7 49.7 419 140-570 3-461 (765)
25 PRK14574 hmsH outer membrane p 99.9 6.2E-18 1.4E-22 174.8 53.5 431 91-530 41-513 (822)
26 PRK14574 hmsH outer membrane p 99.9 1.3E-17 2.7E-22 172.5 53.8 436 126-571 41-519 (822)
27 KOG0495 HAT repeat protein [RN 99.8 4.2E-15 9E-20 141.0 49.6 457 95-567 387-882 (913)
28 KOG0495 HAT repeat protein [RN 99.8 4.4E-15 9.6E-20 140.8 49.2 468 91-576 353-857 (913)
29 KOG1915 Cell cycle control pro 99.8 7.8E-15 1.7E-19 134.1 47.1 473 86-571 75-591 (677)
30 KOG1915 Cell cycle control pro 99.8 3.8E-15 8.2E-20 136.1 43.7 440 117-568 71-539 (677)
31 KOG2003 TPR repeat-containing 99.8 6.1E-17 1.3E-21 146.8 32.1 456 85-551 202-709 (840)
32 KOG2076 RNA polymerase III tra 99.8 1.3E-14 2.9E-19 143.0 49.3 471 90-565 145-695 (895)
33 KOG4422 Uncharacterized conser 99.8 8.4E-15 1.8E-19 132.2 43.6 334 92-442 123-479 (625)
34 KOG4422 Uncharacterized conser 99.8 1.1E-13 2.5E-18 125.0 42.9 431 120-572 117-597 (625)
35 KOG2076 RNA polymerase III tra 99.8 5.7E-14 1.2E-18 138.6 44.3 446 119-568 139-658 (895)
36 KOG2003 TPR repeat-containing 99.8 1.5E-15 3.3E-20 137.8 29.9 445 125-579 207-702 (840)
37 KOG3785 Uncharacterized conser 99.8 1E-14 2.3E-19 128.4 33.7 452 91-569 29-494 (557)
38 TIGR00540 hemY_coli hemY prote 99.7 9E-14 2E-18 136.4 35.6 290 267-564 95-398 (409)
39 KOG1155 Anaphase-promoting com 99.7 7.9E-13 1.7E-17 120.9 38.4 161 328-492 332-492 (559)
40 KOG0547 Translocase of outer m 99.7 1.3E-13 2.7E-18 126.9 33.3 424 86-529 117-565 (606)
41 PRK10747 putative protoheme IX 99.7 1.3E-13 2.9E-18 134.4 36.1 284 269-565 97-390 (398)
42 KOG1155 Anaphase-promoting com 99.7 3.2E-12 7E-17 117.0 42.0 368 181-566 159-537 (559)
43 PF13429 TPR_15: Tetratricopep 99.7 9.4E-17 2E-21 149.7 12.7 262 296-564 13-276 (280)
44 KOG0547 Translocase of outer m 99.7 1.9E-13 4.2E-18 125.7 32.1 411 125-564 121-565 (606)
45 PF13429 TPR_15: Tetratricopep 99.7 1.8E-16 3.9E-21 147.8 11.6 258 89-351 13-273 (280)
46 KOG1173 Anaphase-promoting com 99.7 3.4E-12 7.3E-17 119.9 38.7 448 86-546 18-532 (611)
47 TIGR00540 hemY_coli hemY prote 99.7 2.4E-13 5.1E-18 133.5 32.7 290 129-424 94-398 (409)
48 KOG1126 DNA-binding cell divis 99.7 4.1E-14 9E-19 135.3 26.1 291 271-571 334-626 (638)
49 PRK10747 putative protoheme IX 99.7 3.9E-13 8.4E-18 131.1 33.8 280 167-457 97-387 (398)
50 COG2956 Predicted N-acetylgluc 99.6 1.1E-12 2.4E-17 114.5 29.2 293 269-571 48-353 (389)
51 COG2956 Predicted N-acetylgluc 99.6 3E-12 6.4E-17 111.9 31.1 285 199-493 48-345 (389)
52 KOG1126 DNA-binding cell divis 99.6 2.1E-13 4.7E-18 130.5 24.1 284 235-530 333-620 (638)
53 KOG2047 mRNA splicing factor [ 99.6 3.5E-10 7.7E-15 108.0 44.6 469 85-565 103-651 (835)
54 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.4E-16 111.8 32.8 287 269-565 97-390 (400)
55 KOG2047 mRNA splicing factor [ 99.6 1.6E-09 3.5E-14 103.6 46.8 319 234-559 360-717 (835)
56 KOG1173 Anaphase-promoting com 99.6 1.3E-10 2.7E-15 109.6 38.2 433 121-566 18-519 (611)
57 COG3071 HemY Uncharacterized e 99.6 4.6E-11 9.9E-16 108.0 33.4 287 234-530 97-390 (400)
58 KOG4162 Predicted calmodulin-b 99.6 1.8E-10 3.9E-15 112.5 37.9 430 116-566 320-784 (799)
59 KOG1156 N-terminal acetyltrans 99.5 1.1E-09 2.4E-14 105.0 41.2 460 87-562 11-508 (700)
60 KOG1156 N-terminal acetyltrans 99.5 2.1E-09 4.5E-14 103.2 41.5 429 120-567 9-470 (700)
61 KOG3785 Uncharacterized conser 99.5 5.4E-10 1.2E-14 99.2 34.6 418 90-539 63-497 (557)
62 PRK12370 invasion protein regu 99.5 1.4E-11 2.9E-16 125.8 26.9 266 116-390 253-535 (553)
63 PRK12370 invasion protein regu 99.5 5.4E-11 1.2E-15 121.4 31.2 268 289-566 254-536 (553)
64 PF12569 NARP1: NMDA receptor- 99.5 1.6E-09 3.6E-14 106.7 40.0 292 91-389 11-333 (517)
65 TIGR02521 type_IV_pilW type IV 99.5 5.4E-11 1.2E-15 108.2 27.6 201 361-565 31-232 (234)
66 KOG2376 Signal recognition par 99.5 2E-09 4.4E-14 102.1 37.5 123 88-216 16-140 (652)
67 TIGR02521 type_IV_pilW type IV 99.5 3.1E-11 6.7E-16 109.8 24.2 195 85-283 32-230 (234)
68 KOG1174 Anaphase-promoting com 99.5 1.9E-08 4.1E-13 91.4 40.4 294 268-570 208-505 (564)
69 KOG2376 Signal recognition par 99.5 8.7E-09 1.9E-13 97.9 39.9 420 124-562 17-517 (652)
70 KOG1129 TPR repeat-containing 99.4 1.8E-11 4E-16 107.1 20.0 234 328-568 225-461 (478)
71 KOG1129 TPR repeat-containing 99.4 8.8E-12 1.9E-16 109.1 17.6 227 123-354 227-457 (478)
72 KOG4318 Bicoid mRNA stability 99.4 8.3E-10 1.8E-14 109.3 32.0 103 467-569 492-598 (1088)
73 KOG4162 Predicted calmodulin-b 99.4 2.7E-09 5.9E-14 104.4 34.9 432 80-530 319-783 (799)
74 KOG0548 Molecular co-chaperone 99.4 4.1E-09 8.9E-14 99.2 32.4 425 91-547 9-471 (539)
75 KOG1840 Kinesin light chain [C 99.4 5.4E-10 1.2E-14 108.6 27.4 238 326-563 199-477 (508)
76 KOG4318 Bicoid mRNA stability 99.4 1.7E-09 3.7E-14 107.2 29.4 459 73-565 14-557 (1088)
77 KOG4340 Uncharacterized conser 99.4 6.5E-09 1.4E-13 90.3 29.5 358 85-458 11-373 (459)
78 PF12569 NARP1: NMDA receptor- 99.4 9.6E-09 2.1E-13 101.3 34.9 289 161-458 11-332 (517)
79 COG3063 PilF Tfp pilus assembl 99.3 9.7E-10 2.1E-14 92.1 23.0 195 86-284 37-235 (250)
80 KOG0548 Molecular co-chaperone 99.3 7.9E-09 1.7E-13 97.3 31.0 413 126-568 9-458 (539)
81 KOG1174 Anaphase-promoting com 99.3 7E-08 1.5E-12 87.8 35.2 395 88-498 101-503 (564)
82 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-09 3.7E-14 101.0 26.0 220 94-321 36-266 (296)
83 KOG1840 Kinesin light chain [C 99.3 5.2E-10 1.1E-14 108.7 22.1 235 154-388 199-477 (508)
84 COG3063 PilF Tfp pilus assembl 99.3 5.3E-09 1.1E-13 87.8 24.4 199 363-565 37-236 (250)
85 KOG3617 WD40 and TPR repeat-co 99.3 2.5E-07 5.4E-12 91.4 38.8 210 83-316 756-992 (1416)
86 PRK11189 lipoprotein NlpI; Pro 99.3 5.5E-09 1.2E-13 97.6 27.1 217 306-531 41-266 (296)
87 KOG1127 TPR repeat-containing 99.2 9.9E-08 2.1E-12 96.2 33.8 456 99-563 473-994 (1238)
88 KOG4340 Uncharacterized conser 99.2 1.6E-08 3.4E-13 88.0 24.6 416 122-564 13-442 (459)
89 KOG0624 dsRNA-activated protei 99.2 6E-07 1.3E-11 79.9 33.8 317 117-460 36-370 (504)
90 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 4E-12 91.0 34.6 305 258-566 8-337 (355)
91 cd05804 StaR_like StaR_like; a 99.2 2.1E-07 4.6E-12 90.5 34.5 154 231-388 53-213 (355)
92 KOG3616 Selective LIM binding 99.2 2.5E-07 5.5E-12 90.3 32.0 367 132-561 544-933 (1636)
93 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-10 2.8E-15 75.6 6.7 49 429-477 1-49 (50)
94 PF13041 PPR_2: PPR repeat fam 99.2 1E-10 2.3E-15 76.1 6.2 49 254-302 1-49 (50)
95 KOG1127 TPR repeat-containing 99.2 2.6E-07 5.5E-12 93.4 32.5 435 85-527 493-993 (1238)
96 KOG0624 dsRNA-activated protei 99.1 1.3E-06 2.9E-11 77.8 32.0 318 152-497 36-372 (504)
97 KOG3616 Selective LIM binding 99.1 2.4E-07 5.2E-12 90.4 29.1 109 298-419 739-847 (1636)
98 PRK04841 transcriptional regul 99.1 1.4E-06 3.1E-11 96.0 38.6 371 161-531 348-761 (903)
99 PRK04841 transcriptional regul 99.1 1.3E-06 2.7E-11 96.4 37.5 336 231-566 384-761 (903)
100 KOG0985 Vesicle coat protein c 99.1 1.1E-05 2.4E-10 82.0 38.9 383 118-556 983-1374(1666)
101 PF04733 Coatomer_E: Coatomer 99.0 8.1E-09 1.8E-13 94.9 16.0 251 264-530 9-265 (290)
102 KOG3617 WD40 and TPR repeat-co 99.0 1.4E-06 3E-11 86.4 31.4 256 118-423 725-994 (1416)
103 KOG0985 Vesicle coat protein c 99.0 2.9E-05 6.2E-10 79.1 40.8 400 85-528 839-1306(1666)
104 PF04733 Coatomer_E: Coatomer 99.0 2.2E-08 4.8E-13 92.1 17.7 46 307-353 183-228 (290)
105 KOG1125 TPR repeat-containing 99.0 4.9E-08 1.1E-12 92.9 19.7 221 91-317 292-524 (579)
106 KOG2053 Mitochondrial inherita 99.0 5.1E-05 1.1E-09 76.6 42.7 451 93-562 18-533 (932)
107 KOG1914 mRNA cleavage and poly 99.0 4E-05 8.6E-10 73.0 40.7 404 84-493 20-499 (656)
108 PLN02789 farnesyltranstransfer 99.0 1.3E-06 2.8E-11 81.5 27.0 218 340-563 51-300 (320)
109 KOG1070 rRNA processing protei 98.9 2.9E-07 6.4E-12 96.1 23.5 237 323-564 1455-1699(1710)
110 KOG1125 TPR repeat-containing 98.9 2.9E-07 6.3E-12 87.8 21.7 254 299-558 293-564 (579)
111 KOG1128 Uncharacterized conser 98.9 1.1E-07 2.3E-12 93.0 18.5 225 323-568 395-619 (777)
112 KOG1914 mRNA cleavage and poly 98.9 6.6E-05 1.4E-09 71.5 40.5 153 412-566 347-502 (656)
113 PRK10370 formate-dependent nit 98.9 1.1E-06 2.5E-11 76.2 21.2 119 409-530 52-173 (198)
114 PLN02789 farnesyltranstransfer 98.8 9E-06 1.9E-10 76.0 27.9 140 262-405 43-185 (320)
115 KOG1070 rRNA processing protei 98.8 4.6E-06 1E-10 87.5 27.7 205 360-569 1457-1667(1710)
116 TIGR03302 OM_YfiO outer membra 98.8 1.3E-06 2.7E-11 79.4 21.6 187 360-566 32-233 (235)
117 COG5010 TadD Flp pilus assembl 98.8 1.5E-06 3.2E-11 75.1 19.7 166 115-284 63-230 (257)
118 TIGR03302 OM_YfiO outer membra 98.8 7.8E-07 1.7E-11 80.7 18.2 182 84-285 33-232 (235)
119 KOG1128 Uncharacterized conser 98.8 7.6E-07 1.7E-11 87.3 18.4 217 257-494 399-615 (777)
120 PRK15179 Vi polysaccharide bio 98.7 4.5E-06 9.8E-11 86.0 24.8 133 395-530 85-217 (694)
121 COG5010 TadD Flp pilus assembl 98.7 6.2E-06 1.3E-10 71.3 21.0 159 365-527 70-228 (257)
122 PRK14720 transcript cleavage f 98.7 1.3E-05 2.8E-10 83.6 26.6 81 223-320 118-198 (906)
123 PRK10370 formate-dependent nit 98.7 4.1E-06 8.8E-11 72.8 19.8 122 444-568 52-176 (198)
124 KOG3081 Vesicle coat complex C 98.7 1.8E-05 3.9E-10 68.5 22.9 245 167-426 21-272 (299)
125 PRK15359 type III secretion sy 98.7 1.4E-06 3.1E-11 71.5 16.0 93 436-530 29-121 (144)
126 KOG3081 Vesicle coat complex C 98.7 2E-05 4.2E-10 68.2 22.8 137 369-516 116-256 (299)
127 KOG3060 Uncharacterized conser 98.7 3.5E-05 7.5E-10 66.2 23.2 203 339-546 25-235 (289)
128 PRK15359 type III secretion sy 98.7 3.7E-06 8E-11 69.0 17.2 98 469-568 27-124 (144)
129 KOG2053 Mitochondrial inherita 98.6 0.0011 2.4E-08 67.4 45.8 196 86-286 43-256 (932)
130 PRK14720 transcript cleavage f 98.6 6E-05 1.3E-09 78.7 26.9 59 293-353 118-176 (906)
131 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 54.8 4.4 32 251-282 2-33 (34)
132 PRK15179 Vi polysaccharide bio 98.5 1.4E-05 3E-10 82.6 21.1 134 115-250 82-217 (694)
133 TIGR02552 LcrH_SycD type III s 98.5 5.4E-06 1.2E-10 67.8 15.0 99 467-567 18-116 (135)
134 KOG3060 Uncharacterized conser 98.5 0.00016 3.4E-09 62.3 23.7 200 303-507 24-231 (289)
135 COG4783 Putative Zn-dependent 98.5 1.2E-05 2.5E-10 75.8 17.4 142 89-250 311-454 (484)
136 COG4783 Putative Zn-dependent 98.5 0.00012 2.6E-09 69.2 23.5 110 372-485 317-427 (484)
137 TIGR02552 LcrH_SycD type III s 98.5 6.6E-06 1.4E-10 67.2 13.7 108 107-216 6-115 (135)
138 PF12854 PPR_1: PPR repeat 98.4 3.9E-07 8.4E-12 53.0 4.1 30 462-491 3-32 (34)
139 KOG2041 WD40 repeat protein [G 98.4 0.0012 2.5E-08 65.2 28.2 205 151-387 689-904 (1189)
140 PF09976 TPR_21: Tetratricopep 98.3 2.4E-05 5.2E-10 64.6 14.7 125 86-212 14-144 (145)
141 PF09976 TPR_21: Tetratricopep 98.3 3.7E-05 8.1E-10 63.4 15.8 125 434-562 15-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.3E-05 7.1E-10 73.7 16.2 123 400-528 173-295 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.2E-05 1.3E-09 71.9 16.2 129 361-495 169-297 (395)
144 PF12895 Apc3: Anaphase-promot 98.1 4.9E-06 1.1E-10 61.2 5.6 81 479-561 2-83 (84)
145 PRK15363 pathogenicity island 98.1 0.00011 2.4E-09 59.3 13.2 92 472-565 41-132 (157)
146 cd00189 TPR Tetratricopeptide 98.1 6.9E-05 1.5E-09 56.6 11.9 96 469-566 3-98 (100)
147 KOG0550 Molecular chaperone (D 98.1 0.0012 2.5E-08 61.2 20.3 229 327-564 169-422 (486)
148 cd00189 TPR Tetratricopeptide 98.0 6.8E-05 1.5E-09 56.6 10.6 92 87-180 3-94 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00021 4.5E-09 56.8 13.6 100 468-567 4-107 (119)
150 PLN03088 SGT1, suppressor of 98.0 0.00017 3.6E-09 69.3 14.9 92 437-530 8-99 (356)
151 KOG0550 Molecular chaperone (D 98.0 0.0055 1.2E-07 57.0 23.2 274 89-390 54-350 (486)
152 KOG2041 WD40 repeat protein [G 98.0 0.02 4.4E-07 56.9 27.5 73 99-180 678-760 (1189)
153 PRK15363 pathogenicity island 98.0 0.0002 4.3E-09 57.9 11.8 97 118-215 34-132 (157)
154 PLN03088 SGT1, suppressor of 98.0 0.00017 3.6E-09 69.3 13.6 98 88-187 6-104 (356)
155 PF07079 DUF1347: Protein of u 98.0 0.018 4E-07 54.4 40.9 431 93-541 15-530 (549)
156 COG4235 Cytochrome c biogenesi 97.9 0.00078 1.7E-08 60.3 16.4 110 463-574 153-265 (287)
157 PRK10866 outer membrane biogen 97.9 0.0036 7.8E-08 56.4 20.9 179 367-564 38-240 (243)
158 KOG0553 TPR repeat-containing 97.9 0.00014 3E-09 64.5 11.3 95 93-189 90-185 (304)
159 PF12895 Apc3: Anaphase-promot 97.9 1.5E-05 3.2E-10 58.6 4.7 81 97-179 2-83 (84)
160 KOG1130 Predicted G-alpha GTPa 97.9 0.00014 3.1E-09 66.8 11.0 264 91-354 24-343 (639)
161 PF14938 SNAP: Soluble NSF att 97.9 0.00081 1.7E-08 62.5 16.1 60 86-146 37-101 (282)
162 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00078 1.7E-08 53.4 14.1 98 433-530 4-105 (119)
163 TIGR00756 PPR pentatricopeptid 97.8 3.2E-05 7E-10 45.6 4.4 33 433-465 2-34 (35)
164 TIGR00756 PPR pentatricopeptid 97.8 2.5E-05 5.5E-10 46.1 3.9 33 258-290 2-34 (35)
165 PF13812 PPR_3: Pentatricopept 97.8 4.5E-05 9.8E-10 44.6 4.2 32 433-464 3-34 (34)
166 CHL00033 ycf3 photosystem I as 97.8 0.00059 1.3E-08 58.0 12.7 80 85-165 36-117 (168)
167 PF05843 Suf: Suppressor of fo 97.8 0.00045 9.8E-09 63.9 12.8 129 85-215 2-136 (280)
168 PF05843 Suf: Suppressor of fo 97.8 0.00024 5.3E-09 65.7 10.9 129 120-250 2-136 (280)
169 KOG0553 TPR repeat-containing 97.8 0.00034 7.4E-09 62.1 11.0 101 439-543 89-189 (304)
170 PF14938 SNAP: Soluble NSF att 97.8 0.0071 1.5E-07 56.2 20.4 129 433-563 116-261 (282)
171 PRK02603 photosystem I assembl 97.7 0.0022 4.7E-08 54.7 15.8 82 434-516 38-121 (172)
172 PRK02603 photosystem I assembl 97.7 0.0013 2.9E-08 56.0 14.4 102 466-568 35-152 (172)
173 CHL00033 ycf3 photosystem I as 97.7 0.0015 3.2E-08 55.6 14.4 60 470-529 39-100 (168)
174 PF13812 PPR_3: Pentatricopept 97.7 5.6E-05 1.2E-09 44.2 3.9 31 258-288 3-33 (34)
175 PF13432 TPR_16: Tetratricopep 97.7 0.00014 3.1E-09 50.3 6.6 59 507-566 3-61 (65)
176 COG4700 Uncharacterized protei 97.7 0.013 2.9E-07 48.2 18.3 124 152-277 87-214 (251)
177 PF12688 TPR_5: Tetratrico pep 97.7 0.0014 3E-08 51.2 12.3 94 87-180 4-101 (120)
178 PF10037 MRP-S27: Mitochondria 97.7 0.00098 2.1E-08 64.1 13.7 124 356-479 61-186 (429)
179 PF13414 TPR_11: TPR repeat; P 97.7 0.00023 5E-09 49.9 7.1 65 500-565 2-67 (69)
180 PF10037 MRP-S27: Mitochondria 97.6 0.00082 1.8E-08 64.6 12.6 125 320-444 60-186 (429)
181 PRK10866 outer membrane biogen 97.6 0.019 4.1E-07 51.8 20.1 53 438-490 182-236 (243)
182 PRK10153 DNA-binding transcrip 97.6 0.0064 1.4E-07 61.2 18.6 61 467-529 421-481 (517)
183 PF13432 TPR_16: Tetratricopep 97.6 0.00031 6.8E-09 48.5 6.8 59 90-149 3-61 (65)
184 PF14559 TPR_19: Tetratricopep 97.6 0.00022 4.7E-09 49.9 6.0 54 95-149 2-55 (68)
185 COG4700 Uncharacterized protei 97.6 0.032 6.9E-07 46.1 18.6 167 367-540 62-231 (251)
186 COG4235 Cytochrome c biogenesi 97.5 0.0042 9.1E-08 55.7 14.7 111 151-264 153-268 (287)
187 PRK10803 tol-pal system protei 97.5 0.0027 5.9E-08 57.6 14.0 99 469-568 146-249 (263)
188 KOG1130 Predicted G-alpha GTPa 97.5 0.0015 3.3E-08 60.4 12.1 280 127-422 25-341 (639)
189 PF12688 TPR_5: Tetratrico pep 97.5 0.004 8.7E-08 48.6 12.9 92 437-528 7-102 (120)
190 KOG1258 mRNA processing protei 97.5 0.11 2.4E-06 51.3 33.5 406 85-515 46-489 (577)
191 PRK10153 DNA-binding transcrip 97.5 0.0057 1.2E-07 61.6 17.1 64 220-285 419-482 (517)
192 PF13525 YfiO: Outer membrane 97.5 0.015 3.3E-07 51.0 17.8 172 365-556 9-198 (203)
193 PF14559 TPR_19: Tetratricopep 97.5 0.00033 7.2E-09 48.9 6.0 60 130-190 2-62 (68)
194 PF07079 DUF1347: Protein of u 97.5 0.11 2.3E-06 49.4 40.4 424 129-562 16-521 (549)
195 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.6E-09 41.1 3.3 28 258-285 2-29 (31)
196 PF13414 TPR_11: TPR repeat; P 97.4 0.00082 1.8E-08 47.0 7.1 65 465-530 2-67 (69)
197 PF01535 PPR: PPR repeat; Int 97.4 0.00023 5E-09 40.5 3.5 29 433-461 2-30 (31)
198 KOG2796 Uncharacterized conser 97.4 0.0086 1.9E-07 52.2 14.1 133 293-426 179-316 (366)
199 PF08579 RPM2: Mitochondrial r 97.4 0.0027 5.9E-08 47.6 9.4 76 227-302 31-115 (120)
200 PRK15331 chaperone protein Sic 97.4 0.0028 6.2E-08 51.6 10.2 85 443-529 49-133 (165)
201 COG3898 Uncharacterized membra 97.3 0.13 2.9E-06 47.8 31.1 293 258-566 84-393 (531)
202 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.15 3.3E-06 48.4 36.4 131 432-566 398-532 (660)
203 KOG2796 Uncharacterized conser 97.3 0.016 3.6E-07 50.5 15.1 130 123-285 181-315 (366)
204 PF08579 RPM2: Mitochondrial r 97.3 0.0043 9.3E-08 46.6 10.1 70 409-478 38-116 (120)
205 COG3898 Uncharacterized membra 97.3 0.14 3E-06 47.7 30.0 306 100-425 69-392 (531)
206 PF13371 TPR_9: Tetratricopept 97.3 0.0013 2.9E-08 46.6 7.2 58 509-567 3-60 (73)
207 KOG1538 Uncharacterized conser 97.2 0.094 2E-06 52.0 20.6 93 86-181 558-659 (1081)
208 PF13525 YfiO: Outer membrane 97.2 0.049 1.1E-06 47.8 17.4 54 301-354 15-70 (203)
209 PRK15331 chaperone protein Sic 97.2 0.022 4.7E-07 46.6 13.5 93 122-215 40-134 (165)
210 PRK10803 tol-pal system protei 97.1 0.0086 1.9E-07 54.4 12.2 51 130-180 154-206 (263)
211 PF06239 ECSIT: Evolutionarily 97.1 0.018 3.8E-07 49.2 12.4 50 429-478 45-99 (228)
212 KOG2114 Vacuolar assembly/sort 97.1 0.29 6.4E-06 50.3 22.7 178 85-283 335-517 (933)
213 KOG1258 mRNA processing protei 97.0 0.43 9.2E-06 47.4 34.7 412 118-550 44-489 (577)
214 KOG2280 Vacuolar assembly/sort 97.0 0.53 1.2E-05 47.9 25.2 110 362-490 685-794 (829)
215 PF06239 ECSIT: Evolutionarily 97.0 0.03 6.6E-07 47.8 13.0 112 381-513 34-150 (228)
216 PF13371 TPR_9: Tetratricopept 96.9 0.0068 1.5E-07 42.9 8.0 56 474-530 3-58 (73)
217 PF03704 BTAD: Bacterial trans 96.9 0.026 5.7E-07 46.5 12.7 56 471-527 67-122 (146)
218 PF10300 DUF3808: Protein of u 96.9 0.1 2.2E-06 52.2 18.5 120 444-566 246-377 (468)
219 PF13424 TPR_12: Tetratricopep 96.8 0.0039 8.5E-08 44.8 6.1 62 502-563 6-73 (78)
220 COG1729 Uncharacterized protei 96.8 0.034 7.3E-07 49.4 12.4 102 468-571 144-250 (262)
221 PF13281 DUF4071: Domain of un 96.7 0.48 1E-05 45.1 20.3 166 363-530 143-334 (374)
222 KOG2114 Vacuolar assembly/sort 96.7 0.93 2E-05 46.9 26.4 215 83-317 282-516 (933)
223 PF13424 TPR_12: Tetratricopep 96.6 0.0034 7.4E-08 45.2 4.6 22 158-179 9-30 (78)
224 PF04840 Vps16_C: Vps16, C-ter 96.6 0.65 1.4E-05 43.7 29.1 106 399-524 180-285 (319)
225 PF13281 DUF4071: Domain of un 96.6 0.7 1.5E-05 44.0 20.6 31 360-390 304-334 (374)
226 COG3118 Thioredoxin domain-con 96.6 0.42 9.1E-06 43.1 17.7 141 231-375 144-286 (304)
227 KOG2610 Uncharacterized conser 96.6 0.077 1.7E-06 48.2 13.2 152 373-528 115-274 (491)
228 KOG4555 TPR repeat-containing 96.6 0.059 1.3E-06 41.6 10.6 91 475-566 52-145 (175)
229 COG3118 Thioredoxin domain-con 96.5 0.18 4E-06 45.4 15.1 146 126-275 141-291 (304)
230 PF03704 BTAD: Bacterial trans 96.5 0.024 5.3E-07 46.7 9.2 75 502-577 63-142 (146)
231 PF04840 Vps16_C: Vps16, C-ter 96.4 0.83 1.8E-05 43.0 29.7 109 293-421 179-287 (319)
232 PF04053 Coatomer_WDAD: Coatom 96.4 0.11 2.4E-06 51.2 14.7 160 91-283 268-429 (443)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.068 1.5E-06 51.4 12.6 64 430-495 74-141 (453)
234 KOG1941 Acetylcholine receptor 96.3 0.71 1.5E-05 42.8 17.9 126 367-492 128-272 (518)
235 KOG1538 Uncharacterized conser 96.3 0.42 9E-06 47.7 17.4 77 65-144 566-657 (1081)
236 PF04053 Coatomer_WDAD: Coatom 96.2 0.11 2.3E-06 51.3 13.5 158 162-352 269-428 (443)
237 PRK11906 transcriptional regul 96.1 0.33 7.2E-06 47.0 15.5 116 100-216 274-402 (458)
238 COG0457 NrfG FOG: TPR repeat [ 96.1 1 2.2E-05 40.3 30.5 222 305-529 37-264 (291)
239 PRK11906 transcriptional regul 96.0 0.8 1.7E-05 44.5 17.6 78 449-528 322-399 (458)
240 KOG2610 Uncharacterized conser 96.0 0.17 3.6E-06 46.2 12.3 150 130-281 114-272 (491)
241 PF12921 ATP13: Mitochondrial 96.0 0.15 3.2E-06 40.3 10.8 50 497-546 48-98 (126)
242 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.051 1.1E-06 52.2 9.6 104 463-571 72-180 (453)
243 KOG0543 FKBP-type peptidyl-pro 96.0 0.11 2.4E-06 48.8 11.5 89 91-180 215-317 (397)
244 KOG1585 Protein required for f 96.0 0.62 1.3E-05 40.7 14.9 85 121-213 33-118 (308)
245 COG4105 ComL DNA uptake lipopr 96.0 1.1 2.3E-05 39.9 23.3 175 370-564 43-232 (254)
246 KOG2280 Vacuolar assembly/sort 96.0 2.3 4.9E-05 43.6 31.9 110 431-559 684-793 (829)
247 KOG0543 FKBP-type peptidyl-pro 95.9 0.21 4.5E-06 47.1 12.9 96 468-565 259-355 (397)
248 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.9 4.1E-05 41.4 37.5 425 85-530 43-531 (660)
249 PF08631 SPO22: Meiosis protei 95.8 1.6 3.4E-05 40.5 25.1 223 338-563 5-273 (278)
250 PF13428 TPR_14: Tetratricopep 95.8 0.029 6.4E-07 34.8 5.0 38 504-542 4-41 (44)
251 PF12921 ATP13: Mitochondrial 95.8 0.19 4E-06 39.8 10.6 98 396-513 2-100 (126)
252 KOG1920 IkappaB kinase complex 95.8 3.8 8.2E-05 44.5 23.6 28 257-284 791-820 (1265)
253 COG2976 Uncharacterized protei 95.8 0.99 2.1E-05 38.1 14.8 116 449-566 70-189 (207)
254 PF10300 DUF3808: Protein of u 95.7 0.52 1.1E-05 47.3 15.9 178 102-284 175-375 (468)
255 KOG2396 HAT (Half-A-TPR) repea 95.6 2.4 5.2E-05 41.4 37.7 425 102-564 89-558 (568)
256 smart00299 CLH Clathrin heavy 95.6 1 2.2E-05 36.7 15.3 45 87-132 10-54 (140)
257 PF04184 ST7: ST7 protein; In 95.6 2 4.4E-05 42.0 18.1 58 471-528 264-322 (539)
258 PF13428 TPR_14: Tetratricopep 95.6 0.037 8E-07 34.3 4.7 38 122-160 4-41 (44)
259 KOG1941 Acetylcholine receptor 95.5 0.5 1.1E-05 43.7 13.3 225 93-318 15-273 (518)
260 COG4105 ComL DNA uptake lipopr 95.5 1.7 3.6E-05 38.7 20.6 56 300-355 43-100 (254)
261 COG1729 Uncharacterized protei 95.5 0.19 4.1E-06 44.8 10.6 87 93-180 150-241 (262)
262 KOG1550 Extracellular protein 95.5 3.7 8E-05 42.4 24.8 177 99-286 227-427 (552)
263 PF10345 Cohesin_load: Cohesin 95.3 4.5 9.7E-05 42.5 37.2 191 373-564 373-605 (608)
264 PF13512 TPR_18: Tetratricopep 95.2 0.55 1.2E-05 37.6 11.3 76 367-442 16-93 (142)
265 KOG1585 Protein required for f 95.2 2 4.3E-05 37.7 16.8 204 85-312 32-248 (308)
266 PF13512 TPR_18: Tetratricopep 95.2 0.37 7.9E-06 38.6 10.2 83 85-168 11-96 (142)
267 COG4785 NlpI Lipoprotein NlpI, 95.0 2 4.4E-05 36.9 17.1 181 340-531 79-267 (297)
268 KOG4555 TPR repeat-containing 95.0 0.23 5E-06 38.5 8.1 53 94-147 53-105 (175)
269 COG4785 NlpI Lipoprotein NlpI, 94.9 2.1 4.5E-05 36.9 14.3 28 292-319 238-265 (297)
270 smart00299 CLH Clathrin heavy 94.9 1.7 3.7E-05 35.3 16.0 128 121-268 9-137 (140)
271 COG0457 NrfG FOG: TPR repeat [ 94.8 2.8 6.1E-05 37.3 29.8 222 270-494 37-264 (291)
272 PF09205 DUF1955: Domain of un 94.6 1.7 3.7E-05 34.0 15.5 64 503-567 88-151 (161)
273 PF04184 ST7: ST7 protein; In 94.5 4.6 9.9E-05 39.6 17.3 54 439-492 267-321 (539)
274 PF09613 HrpB1_HrpK: Bacterial 94.4 2.4 5.2E-05 34.8 13.1 62 433-496 9-74 (160)
275 KOG1920 IkappaB kinase complex 94.2 10 0.00022 41.4 25.5 24 87-110 680-703 (1265)
276 COG3629 DnrI DNA-binding trans 94.2 0.61 1.3E-05 42.4 10.4 79 466-545 153-236 (280)
277 PF13431 TPR_17: Tetratricopep 94.1 0.067 1.5E-06 30.9 2.9 21 500-520 12-32 (34)
278 COG3629 DnrI DNA-binding trans 93.9 0.83 1.8E-05 41.6 10.7 79 431-510 153-236 (280)
279 PF08631 SPO22: Meiosis protei 93.7 5.8 0.00013 36.8 25.4 121 95-215 4-150 (278)
280 PF13431 TPR_17: Tetratricopep 93.7 0.078 1.7E-06 30.6 2.6 24 151-174 10-33 (34)
281 PF13176 TPR_7: Tetratricopept 93.7 0.17 3.7E-06 29.6 4.1 26 538-563 1-26 (36)
282 COG4649 Uncharacterized protei 93.4 3.9 8.4E-05 33.9 14.8 123 407-529 69-195 (221)
283 KOG3941 Intermediate in Toll s 93.3 1.2 2.6E-05 39.9 10.2 104 429-551 65-173 (406)
284 KOG1550 Extracellular protein 93.3 12 0.00025 38.8 27.1 80 481-568 454-541 (552)
285 PF13176 TPR_7: Tetratricopept 93.1 0.25 5.4E-06 28.9 4.2 26 503-528 1-26 (36)
286 PF10602 RPN7: 26S proteasome 93.0 1.7 3.8E-05 36.9 10.9 60 433-492 38-99 (177)
287 KOG0276 Vesicle coat complex C 92.9 1.8 3.8E-05 43.2 11.8 154 93-283 595-748 (794)
288 PF09205 DUF1955: Domain of un 92.9 3.8 8.2E-05 32.2 14.9 135 130-286 13-150 (161)
289 KOG2066 Vacuolar assembly/sort 92.8 14 0.0003 38.5 27.8 170 88-283 360-532 (846)
290 PF02259 FAT: FAT domain; Int 92.8 9.8 0.00021 36.7 21.3 65 465-529 145-212 (352)
291 PF10345 Cohesin_load: Cohesin 92.7 15 0.00033 38.7 40.3 425 102-528 39-604 (608)
292 KOG3941 Intermediate in Toll s 92.6 1.3 2.8E-05 39.7 9.4 116 345-481 53-173 (406)
293 KOG4234 TPR repeat-containing 92.5 2.8 6.2E-05 35.5 10.8 91 439-530 103-197 (271)
294 COG1747 Uncharacterized N-term 92.5 12 0.00026 36.9 25.1 61 327-390 67-127 (711)
295 PF09613 HrpB1_HrpK: Bacterial 92.4 5.4 0.00012 32.8 13.0 18 129-146 54-71 (160)
296 PF07719 TPR_2: Tetratricopept 92.3 0.37 7.9E-06 27.5 4.2 28 538-565 3-30 (34)
297 PRK09687 putative lyase; Provi 92.3 9.5 0.00021 35.3 25.9 58 325-389 205-262 (280)
298 PF00637 Clathrin: Region in C 92.2 0.018 3.8E-07 47.3 -2.2 85 90-181 13-97 (143)
299 PF10602 RPN7: 26S proteasome 92.1 2.4 5.2E-05 36.1 10.5 24 366-389 41-64 (177)
300 COG4649 Uncharacterized protei 92.0 6.4 0.00014 32.7 14.4 122 373-494 70-195 (221)
301 PF00515 TPR_1: Tetratricopept 91.9 0.44 9.5E-06 27.3 4.2 28 538-565 3-30 (34)
302 TIGR02561 HrpB1_HrpK type III 91.7 6 0.00013 32.0 11.9 52 443-496 22-74 (153)
303 PF04097 Nic96: Nup93/Nic96; 91.7 20 0.00042 37.7 19.5 222 332-562 264-531 (613)
304 PF13170 DUF4003: Protein of u 91.5 12 0.00026 34.9 19.9 91 343-435 120-221 (297)
305 KOG0276 Vesicle coat complex C 91.5 2.1 4.5E-05 42.7 10.4 150 166-352 598-747 (794)
306 KOG2066 Vacuolar assembly/sort 91.4 21 0.00044 37.3 27.0 101 161-268 363-467 (846)
307 KOG0890 Protein kinase of the 91.3 39 0.00085 40.4 26.1 320 191-531 1388-1732(2382)
308 COG2909 MalT ATP-dependent tra 90.4 28 0.0006 37.1 27.4 228 299-526 423-684 (894)
309 PF13170 DUF4003: Protein of u 90.1 16 0.00035 34.1 21.2 149 377-527 78-243 (297)
310 PF08424 NRDE-2: NRDE-2, neces 89.2 21 0.00045 34.0 17.9 58 416-475 51-108 (321)
311 PRK15180 Vi polysaccharide bio 89.0 24 0.00052 34.5 29.3 121 128-251 298-421 (831)
312 PF07035 Mic1: Colon cancer-as 89.0 12 0.00027 31.2 14.9 32 419-450 17-48 (167)
313 TIGR02561 HrpB1_HrpK type III 88.8 11 0.00024 30.5 11.9 17 164-180 54-70 (153)
314 PF07719 TPR_2: Tetratricopept 88.7 1.5 3.2E-05 24.9 4.6 28 503-530 3-30 (34)
315 TIGR03504 FimV_Cterm FimV C-te 88.5 1.1 2.4E-05 27.6 4.0 24 542-565 5-28 (44)
316 PF13174 TPR_6: Tetratricopept 88.4 0.81 1.8E-05 25.8 3.3 27 539-565 3-29 (33)
317 PF00515 TPR_1: Tetratricopept 88.3 1.6 3.6E-05 24.8 4.6 27 503-529 3-29 (34)
318 PF02259 FAT: FAT domain; Int 88.3 25 0.00054 33.9 24.7 65 395-459 145-212 (352)
319 PF11207 DUF2989: Protein of u 88.0 6.5 0.00014 33.7 9.5 78 477-556 118-198 (203)
320 KOG4234 TPR repeat-containing 87.9 16 0.00035 31.2 12.9 93 404-497 103-199 (271)
321 KOG2471 TPR repeat-containing 87.8 25 0.00055 34.6 14.2 45 503-549 338-382 (696)
322 KOG1464 COP9 signalosome, subu 87.7 20 0.00044 32.1 16.6 51 96-146 39-92 (440)
323 PF13181 TPR_8: Tetratricopept 87.6 1.7 3.7E-05 24.7 4.4 29 537-565 2-30 (34)
324 PF06552 TOM20_plant: Plant sp 87.6 6.5 0.00014 33.0 9.0 11 467-477 70-80 (186)
325 PF02284 COX5A: Cytochrome c o 87.3 10 0.00022 28.3 8.9 59 484-543 28-86 (108)
326 PF11207 DUF2989: Protein of u 87.3 4 8.6E-05 35.0 7.9 76 164-241 117-198 (203)
327 PF07035 Mic1: Colon cancer-as 87.1 16 0.00036 30.5 15.8 30 245-274 18-47 (167)
328 PF13374 TPR_10: Tetratricopep 86.9 1.8 3.9E-05 25.9 4.5 28 537-564 3-30 (42)
329 PF13374 TPR_10: Tetratricopep 86.9 1.9 4E-05 25.9 4.5 28 502-529 3-30 (42)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 4.9 0.00011 29.6 6.9 62 481-543 22-83 (103)
331 PF08424 NRDE-2: NRDE-2, neces 86.5 30 0.00066 32.9 15.1 98 115-213 15-129 (321)
332 PF09986 DUF2225: Uncharacteri 86.4 16 0.00034 32.3 11.6 95 476-570 87-199 (214)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 86.2 6.2 0.00013 29.1 7.2 59 448-508 24-83 (103)
334 COG4455 ImpE Protein of avirul 86.2 6 0.00013 34.2 8.2 76 434-510 4-81 (273)
335 KOG4648 Uncharacterized conser 86.0 3.8 8.2E-05 37.9 7.5 96 88-185 101-197 (536)
336 KOG0890 Protein kinase of the 85.8 90 0.0019 37.7 34.9 322 226-569 1388-1735(2382)
337 KOG2396 HAT (Half-A-TPR) repea 85.7 40 0.00086 33.4 36.7 412 83-530 104-559 (568)
338 PRK09687 putative lyase; Provi 85.6 30 0.00066 32.1 27.9 137 394-546 140-277 (280)
339 PF06552 TOM20_plant: Plant sp 85.6 3 6.5E-05 34.9 6.1 40 203-250 97-136 (186)
340 PF02284 COX5A: Cytochrome c o 85.5 13 0.00028 27.8 8.6 43 138-180 29-71 (108)
341 PF07721 TPR_4: Tetratricopept 85.3 1.3 2.8E-05 23.6 2.7 22 539-560 4-25 (26)
342 COG3947 Response regulator con 85.2 30 0.00065 31.6 15.9 70 434-504 282-356 (361)
343 COG4455 ImpE Protein of avirul 84.8 9.2 0.0002 33.1 8.8 77 86-163 3-81 (273)
344 PF07575 Nucleopor_Nup85: Nup8 84.7 55 0.0012 34.2 18.4 25 547-571 506-530 (566)
345 KOG1586 Protein required for f 84.5 28 0.00061 30.7 18.2 54 445-498 128-186 (288)
346 KOG4648 Uncharacterized conser 84.1 3.9 8.4E-05 37.8 6.7 92 439-535 105-197 (536)
347 COG1747 Uncharacterized N-term 83.8 49 0.0011 33.0 24.4 162 292-460 67-234 (711)
348 COG3947 Response regulator con 83.8 35 0.00076 31.2 16.2 70 468-538 281-355 (361)
349 PF13174 TPR_6: Tetratricopept 83.4 2.5 5.5E-05 23.6 3.7 27 504-530 3-29 (33)
350 KOG1464 COP9 signalosome, subu 83.4 34 0.00073 30.8 18.5 251 234-491 40-328 (440)
351 KOG4570 Uncharacterized conser 83.3 6.6 0.00014 36.0 7.7 103 356-460 59-164 (418)
352 KOG1586 Protein required for f 82.5 34 0.00074 30.2 21.9 21 301-321 164-184 (288)
353 KOG4570 Uncharacterized conser 82.4 9.1 0.0002 35.1 8.2 101 149-250 59-164 (418)
354 PF13181 TPR_8: Tetratricopept 82.3 4.4 9.5E-05 22.9 4.4 29 502-530 2-30 (34)
355 PF07575 Nucleopor_Nup85: Nup8 82.1 69 0.0015 33.4 17.9 18 90-107 154-171 (566)
356 PF07721 TPR_4: Tetratricopept 81.8 2.3 4.9E-05 22.6 2.8 16 161-176 8-23 (26)
357 PF04097 Nic96: Nup93/Nic96; 81.6 75 0.0016 33.5 25.1 88 263-355 265-356 (613)
358 PF00637 Clathrin: Region in C 81.3 1 2.3E-05 36.8 2.0 83 125-211 13-95 (143)
359 COG2976 Uncharacterized protei 81.1 34 0.00074 29.3 14.5 86 370-460 98-188 (207)
360 COG0790 FOG: TPR repeat, SEL1 80.5 50 0.0011 30.8 22.9 45 239-286 173-221 (292)
361 KOG4507 Uncharacterized conser 80.5 11 0.00023 37.9 8.6 86 131-216 619-706 (886)
362 KOG2471 TPR repeat-containing 80.2 57 0.0012 32.3 13.0 37 475-512 344-380 (696)
363 TIGR03504 FimV_Cterm FimV C-te 79.3 5 0.00011 24.7 4.0 25 89-113 4-28 (44)
364 PF07163 Pex26: Pex26 protein; 78.2 33 0.00072 31.2 10.2 87 438-524 90-181 (309)
365 TIGR02508 type_III_yscG type I 77.0 28 0.00061 26.0 8.6 51 475-531 48-98 (115)
366 smart00028 TPR Tetratricopepti 75.0 7.1 0.00015 20.9 3.9 26 539-564 4-29 (34)
367 KOG3364 Membrane protein invol 73.9 43 0.00094 26.7 8.6 66 465-530 31-100 (149)
368 PF09477 Type_III_YscG: Bacter 72.7 39 0.00085 25.6 8.1 28 499-528 69-96 (116)
369 PF07163 Pex26: Pex26 protein; 72.6 58 0.0013 29.7 10.2 87 263-349 90-181 (309)
370 KOG0376 Serine-threonine phosp 72.0 8.8 0.00019 37.5 5.6 107 90-198 10-117 (476)
371 TIGR02508 type_III_yscG type I 71.7 40 0.00086 25.2 7.8 79 482-567 21-99 (115)
372 PF10579 Rapsyn_N: Rapsyn N-te 71.4 17 0.00036 25.8 5.3 46 513-558 18-65 (80)
373 KOG4507 Uncharacterized conser 70.9 16 0.00034 36.8 7.0 88 478-566 619-706 (886)
374 KOG4642 Chaperone-dependent E3 70.6 79 0.0017 28.2 11.0 83 406-492 20-104 (284)
375 KOG0530 Protein farnesyltransf 70.4 84 0.0018 28.4 13.9 91 482-574 94-185 (318)
376 PF10579 Rapsyn_N: Rapsyn N-te 69.4 16 0.00034 25.9 4.9 46 373-418 18-65 (80)
377 PRK10941 hypothetical protein; 69.4 48 0.001 30.5 9.5 61 469-530 184-244 (269)
378 PF14689 SPOB_a: Sensor_kinase 69.1 15 0.00033 24.7 4.8 24 505-528 27-50 (62)
379 COG0790 FOG: TPR repeat, SEL1 68.7 1E+02 0.0022 28.7 23.7 14 167-180 54-67 (292)
380 KOG3364 Membrane protein invol 68.4 60 0.0013 26.0 10.1 69 498-567 29-102 (149)
381 KOG0991 Replication factor C, 68.2 87 0.0019 27.8 12.6 138 399-546 133-282 (333)
382 PF09670 Cas_Cas02710: CRISPR- 67.8 1E+02 0.0022 30.1 12.1 57 91-148 138-198 (379)
383 PF12862 Apc5: Anaphase-promot 67.5 39 0.00085 25.0 7.3 24 507-530 47-70 (94)
384 PF13934 ELYS: Nuclear pore co 67.4 89 0.0019 27.9 10.7 119 117-243 76-198 (226)
385 COG5159 RPN6 26S proteasome re 66.7 1E+02 0.0023 28.2 20.7 211 87-320 6-235 (421)
386 PF04910 Tcf25: Transcriptiona 66.6 1.3E+02 0.0028 29.2 20.6 54 369-422 111-165 (360)
387 KOG0128 RNA-binding protein SA 66.3 1.9E+02 0.0041 31.0 33.1 398 151-560 110-558 (881)
388 PF09670 Cas_Cas02710: CRISPR- 66.2 92 0.002 30.5 11.4 55 405-460 140-198 (379)
389 PRK10941 hypothetical protein; 65.7 1.1E+02 0.0024 28.1 11.1 62 434-496 184-245 (269)
390 KOG4077 Cytochrome c oxidase, 65.5 53 0.0011 25.8 7.4 45 449-493 67-111 (149)
391 KOG4642 Chaperone-dependent E3 65.4 1E+02 0.0022 27.5 10.6 81 97-180 23-104 (284)
392 PRK11619 lytic murein transgly 65.2 1.9E+02 0.0042 30.7 40.8 75 160-237 105-179 (644)
393 KOG2582 COP9 signalosome, subu 65.1 1.2E+02 0.0026 28.9 10.9 87 82-176 73-162 (422)
394 KOG4077 Cytochrome c oxidase, 63.9 45 0.00097 26.2 6.8 59 484-543 67-125 (149)
395 PF11663 Toxin_YhaV: Toxin wit 63.1 8.5 0.00018 30.4 2.9 34 93-128 104-137 (140)
396 PF14561 TPR_20: Tetratricopep 62.7 59 0.0013 23.9 9.0 62 500-561 21-84 (90)
397 KOG4814 Uncharacterized conser 62.3 88 0.0019 32.2 10.2 89 478-567 366-459 (872)
398 PF13929 mRNA_stabil: mRNA sta 61.7 1.3E+02 0.0029 27.7 16.3 167 136-305 113-292 (292)
399 KOG1308 Hsp70-interacting prot 60.9 7.5 0.00016 36.2 2.7 120 442-565 125-244 (377)
400 PF15469 Sec5: Exocyst complex 60.7 1.1E+02 0.0023 26.2 9.8 111 442-577 68-180 (182)
401 PRK12798 chemotaxis protein; R 60.4 1.8E+02 0.0038 28.6 20.7 29 292-320 258-286 (421)
402 KOG2062 26S proteasome regulat 60.1 2.4E+02 0.0051 30.0 30.6 121 440-564 510-634 (929)
403 PF11846 DUF3366: Domain of un 59.9 53 0.0011 28.4 7.8 32 498-529 141-172 (193)
404 KOG2422 Uncharacterized conser 59.6 2.1E+02 0.0046 29.3 13.9 95 86-180 286-404 (665)
405 PF12862 Apc5: Anaphase-promot 59.5 42 0.00092 24.8 6.2 21 543-563 48-68 (94)
406 KOG0687 26S proteasome regulat 58.4 1.6E+02 0.0036 27.6 15.1 96 327-424 105-209 (393)
407 PRK11619 lytic murein transgly 58.0 2.6E+02 0.0056 29.8 40.6 310 129-458 43-373 (644)
408 PF11817 Foie-gras_1: Foie gra 57.5 76 0.0016 28.8 8.7 58 505-562 182-244 (247)
409 PF00244 14-3-3: 14-3-3 protei 57.3 1.3E+02 0.0028 27.1 9.9 48 482-529 142-197 (236)
410 KOG2659 LisH motif-containing 56.8 1.4E+02 0.0031 26.4 9.6 97 429-528 24-130 (228)
411 PF14689 SPOB_a: Sensor_kinase 56.5 28 0.00061 23.4 4.3 24 260-283 27-50 (62)
412 KOG0545 Aryl-hydrocarbon recep 55.8 1.6E+02 0.0034 26.5 12.0 20 438-457 185-204 (329)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 55.6 1E+02 0.0022 24.4 8.9 43 519-561 81-124 (126)
414 KOG0991 Replication factor C, 55.3 1.5E+02 0.0033 26.4 14.7 138 364-511 133-282 (333)
415 PRK13184 pknD serine/threonine 55.1 3.4E+02 0.0074 30.3 29.7 29 85-113 476-504 (932)
416 PF04910 Tcf25: Transcriptiona 54.8 2.1E+02 0.0046 27.8 18.5 142 94-249 20-167 (360)
417 PHA02875 ankyrin repeat protei 54.7 2.3E+02 0.0049 28.1 13.7 75 165-244 10-88 (413)
418 PF11663 Toxin_YhaV: Toxin wit 54.5 13 0.00029 29.3 2.7 34 128-163 104-137 (140)
419 smart00386 HAT HAT (Half-A-TPR 54.2 34 0.00074 18.5 4.1 26 134-160 2-27 (33)
420 KOG2908 26S proteasome regulat 53.9 1.4E+02 0.0029 28.3 9.3 86 90-175 81-178 (380)
421 PF11848 DUF3368: Domain of un 53.3 44 0.00095 21.0 4.5 30 513-542 14-43 (48)
422 KOG2300 Uncharacterized conser 52.2 2.6E+02 0.0056 28.0 38.0 121 124-244 12-150 (629)
423 KOG2034 Vacuolar sorting prote 52.0 3.5E+02 0.0075 29.4 27.6 267 124-422 363-653 (911)
424 KOG1308 Hsp70-interacting prot 50.3 25 0.00055 32.9 4.2 119 406-529 124-243 (377)
425 KOG4521 Nuclear pore complex, 50.2 4E+02 0.0087 30.1 13.2 82 224-308 986-1071(1480)
426 PF10255 Paf67: RNA polymerase 49.9 2.6E+02 0.0057 27.5 11.3 62 85-146 123-191 (404)
427 PF02184 HAT: HAT (Half-A-TPR) 49.9 42 0.00091 19.0 3.5 26 516-543 2-27 (32)
428 PF14561 TPR_20: Tetratricopep 49.9 1E+02 0.0022 22.7 8.4 33 116-148 19-51 (90)
429 KOG2063 Vacuolar assembly/sort 49.4 4E+02 0.0086 29.4 25.1 40 369-408 599-638 (877)
430 PF11846 DUF3366: Domain of un 48.9 1E+02 0.0022 26.6 7.8 33 463-495 141-173 (193)
431 PF09986 DUF2225: Uncharacteri 48.7 1.9E+02 0.0042 25.5 11.6 29 503-531 167-195 (214)
432 KOG0403 Neoplastic transformat 48.2 2.9E+02 0.0062 27.4 17.8 58 436-494 514-571 (645)
433 KOG0128 RNA-binding protein SA 48.0 3.9E+02 0.0084 28.9 37.5 371 118-499 112-530 (881)
434 KOG0686 COP9 signalosome, subu 47.4 2.8E+02 0.0061 27.1 14.2 65 256-320 150-216 (466)
435 COG5187 RPN7 26S proteasome re 47.0 2.4E+02 0.0051 26.1 12.2 67 186-252 115-186 (412)
436 PF10366 Vps39_1: Vacuolar sor 46.7 75 0.0016 24.4 5.8 25 189-213 42-66 (108)
437 cd00280 TRFH Telomeric Repeat 46.6 1.3E+02 0.0028 25.7 7.3 56 135-190 85-147 (200)
438 KOG1839 Uncharacterized protei 46.1 2.8E+02 0.0061 31.6 11.7 85 129-213 942-1042(1236)
439 cd00280 TRFH Telomeric Repeat 46.1 1.5E+02 0.0032 25.3 7.6 23 262-284 117-139 (200)
440 PF07720 TPR_3: Tetratricopept 45.6 58 0.0013 19.0 3.8 24 537-560 2-25 (36)
441 cd08819 CARD_MDA5_2 Caspase ac 45.4 1.2E+02 0.0026 22.2 7.0 14 410-423 50-63 (88)
442 KOG4521 Nuclear pore complex, 45.3 3.1E+02 0.0067 30.9 11.5 118 156-279 985-1125(1480)
443 KOG1839 Uncharacterized protei 44.7 2.2E+02 0.0047 32.4 10.6 124 91-214 939-1085(1236)
444 COG5108 RPO41 Mitochondrial DN 43.8 1.4E+02 0.003 31.0 8.4 75 88-165 32-114 (1117)
445 KOG3677 RNA polymerase I-assoc 43.1 93 0.002 30.2 6.7 62 85-146 236-299 (525)
446 PRK10564 maltose regulon perip 43.0 46 0.001 30.8 4.7 27 260-286 261-287 (303)
447 PRK10564 maltose regulon perip 42.7 50 0.0011 30.5 4.9 36 504-539 260-295 (303)
448 PRK09857 putative transposase; 42.1 2.2E+02 0.0047 26.7 9.2 58 512-570 217-274 (292)
449 COG2909 MalT ATP-dependent tra 42.1 5E+02 0.011 28.4 34.9 226 231-456 425-684 (894)
450 COG4976 Predicted methyltransf 41.8 55 0.0012 28.9 4.7 60 93-154 4-63 (287)
451 smart00777 Mad3_BUB1_I Mad3/BU 41.0 1.8E+02 0.0039 23.0 7.5 73 482-560 49-123 (125)
452 KOG2063 Vacuolar assembly/sort 40.8 5.4E+02 0.012 28.4 18.2 128 170-303 494-638 (877)
453 KOG0376 Serine-threonine phosp 40.6 72 0.0016 31.6 5.8 51 407-459 15-66 (476)
454 PF14853 Fis1_TPR_C: Fis1 C-te 40.6 1E+02 0.0022 20.0 6.5 24 507-530 7-30 (53)
455 PF10255 Paf67: RNA polymerase 40.6 1.7E+02 0.0036 28.8 8.3 24 157-180 125-148 (404)
456 COG5159 RPN6 26S proteasome re 40.4 3E+02 0.0065 25.4 20.4 95 190-284 129-234 (421)
457 COG5108 RPO41 Mitochondrial DN 40.0 1.5E+02 0.0033 30.8 8.0 88 85-182 66-161 (1117)
458 KOG4567 GTPase-activating prot 39.5 3.2E+02 0.007 25.6 9.2 44 451-494 263-306 (370)
459 PF04190 DUF410: Protein of un 39.4 3.1E+02 0.0066 25.2 18.5 27 255-281 89-115 (260)
460 PF11848 DUF3368: Domain of un 39.3 98 0.0021 19.5 5.1 35 128-162 11-45 (48)
461 PRK12356 glutaminase; Reviewed 39.2 3.4E+02 0.0073 25.7 9.7 27 174-200 86-112 (319)
462 PF10366 Vps39_1: Vacuolar sor 39.0 1.8E+02 0.0038 22.3 7.7 26 122-147 42-67 (108)
463 KOG0292 Vesicle coat complex C 38.6 5.7E+02 0.012 28.0 23.8 130 163-319 652-781 (1202)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 37.8 2E+02 0.0044 22.7 9.0 43 309-351 81-124 (126)
465 PF15297 CKAP2_C: Cytoskeleton 36.7 3.5E+02 0.0077 25.8 9.4 65 481-547 118-186 (353)
466 KOG0686 COP9 signalosome, subu 36.6 4.2E+02 0.0091 26.0 15.7 63 327-389 151-215 (466)
467 PF11817 Foie-gras_1: Foie gra 36.3 2E+02 0.0044 26.0 8.0 21 437-457 184-204 (247)
468 COG4976 Predicted methyltransf 35.6 77 0.0017 28.1 4.6 54 476-530 5-58 (287)
469 KOG2581 26S proteasome regulat 35.1 4.4E+02 0.0096 25.8 16.7 125 92-216 134-277 (493)
470 TIGR01228 hutU urocanate hydra 33.7 3.6E+02 0.0079 27.1 9.2 69 199-280 207-280 (545)
471 PF03745 DUF309: Domain of unk 33.6 1.5E+02 0.0033 19.9 5.8 16 408-423 11-26 (62)
472 KOG4567 GTPase-activating prot 33.4 4.1E+02 0.0089 24.9 10.0 43 207-249 264-306 (370)
473 COG0735 Fur Fe2+/Zn2+ uptake r 33.3 2.2E+02 0.0047 23.3 6.9 45 366-410 25-69 (145)
474 COG0735 Fur Fe2+/Zn2+ uptake r 32.8 2.4E+02 0.0051 23.1 7.0 41 458-499 13-53 (145)
475 KOG0687 26S proteasome regulat 32.4 4.4E+02 0.0096 25.0 14.2 112 432-545 105-225 (393)
476 KOG2422 Uncharacterized conser 32.4 5.8E+02 0.013 26.4 18.6 55 369-423 350-405 (665)
477 KOG2659 LisH motif-containing 32.2 3.7E+02 0.0079 24.0 8.7 19 193-211 71-89 (228)
478 KOG0551 Hsp90 co-chaperone CNS 31.9 2.3E+02 0.0051 26.8 7.3 54 405-458 90-146 (390)
479 KOG2582 COP9 signalosome, subu 30.6 5E+02 0.011 25.0 15.4 19 301-319 193-211 (422)
480 PF04762 IKI3: IKI3 family; I 30.3 8.4E+02 0.018 27.5 16.2 26 259-284 815-842 (928)
481 cd08819 CARD_MDA5_2 Caspase ac 30.3 2.2E+02 0.0048 20.8 7.2 15 132-146 49-63 (88)
482 PF11123 DNA_Packaging_2: DNA 30.2 1.3E+02 0.0029 20.9 4.1 33 134-167 12-44 (82)
483 PRK08691 DNA polymerase III su 30.2 7.2E+02 0.016 26.7 12.6 85 447-534 180-278 (709)
484 PF00244 14-3-3: 14-3-3 protei 30.0 4.1E+02 0.009 23.9 10.6 59 191-249 6-65 (236)
485 COG5191 Uncharacterized conser 29.5 1.7E+02 0.0038 27.2 6.0 67 430-497 106-173 (435)
486 KOG2297 Predicted translation 29.5 4.8E+02 0.01 24.5 18.9 69 338-416 267-341 (412)
487 COG5187 RPN7 26S proteasome re 29.2 4.7E+02 0.01 24.3 12.7 24 398-421 117-140 (412)
488 PF09477 Type_III_YscG: Bacter 29.1 2.7E+02 0.0058 21.4 10.5 32 253-286 68-99 (116)
489 KOG0403 Neoplastic transformat 28.8 5.9E+02 0.013 25.3 27.3 64 505-569 513-576 (645)
490 PF12968 DUF3856: Domain of Un 28.8 2.9E+02 0.0063 21.7 7.2 62 153-214 54-128 (144)
491 PF13762 MNE1: Mitochondrial s 28.7 3.3E+02 0.0071 22.3 10.7 79 399-477 42-126 (145)
492 PF11768 DUF3312: Protein of u 28.6 6.6E+02 0.014 25.8 11.0 57 158-214 412-472 (545)
493 COG5191 Uncharacterized conser 28.0 1.8E+02 0.0039 27.2 5.8 73 85-159 108-181 (435)
494 COG4941 Predicted RNA polymera 27.4 5.5E+02 0.012 24.5 11.9 115 447-564 272-393 (415)
495 KOG1114 Tripeptidyl peptidase 27.3 9E+02 0.019 26.9 14.1 81 482-563 1212-1293(1304)
496 PF09454 Vps23_core: Vps23 cor 27.2 2.1E+02 0.0045 19.5 5.1 46 465-511 7-52 (65)
497 PRK07003 DNA polymerase III su 27.1 8.6E+02 0.019 26.6 12.3 84 447-533 180-277 (830)
498 KOG2300 Uncharacterized conser 26.7 6.8E+02 0.015 25.3 32.6 119 160-280 13-151 (629)
499 PF15297 CKAP2_C: Cytoskeleton 26.5 5.8E+02 0.013 24.5 10.6 65 446-512 118-186 (353)
500 PF08542 Rep_fac_C: Replicatio 25.5 2.2E+02 0.0047 20.6 5.2 49 499-549 3-51 (89)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-66 Score=547.14 Aligned_cols=483 Identities=24% Similarity=0.357 Sum_probs=296.1
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 84 DFESNNHLRRLVRNGELEEGFKFLESMVYHGD-IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
...+..++..+.+.|++++|+++|++|...|. +++..+++.++..|.+.|..++|..+|+.|.. ||..+|+.++.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 35677788888888888888888888887764 34445555555666666666666666655542 55666666666
Q ss_pred HHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144 163 GYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ 239 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 239 (580)
+|++.|++++|.++|++| +..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 666666666666666655 45566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144 240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS--YGCQPNVITHNIILRSMCSTGRWMDAERLLAEM 317 (580)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (580)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666644 345566666666666666666666666666666
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043144 318 VLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV 397 (580)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 397 (580)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS 477 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 477 (580)
+|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666555556666666666666666666666666666666666666666666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCCC
Q 043144 478 REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----A-------------------RQTYRAIDILADMVTRSCKP 534 (580)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~ 534 (580)
+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 666666666666666666666666666665543321 0 11245556666666666666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144 535 TEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK 570 (580)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 570 (580)
|..||..++.+++..+..+.+..+++.|...+..++
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 666666555554455555555555554444444333
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-66 Score=545.35 Aligned_cols=486 Identities=22% Similarity=0.364 Sum_probs=462.1
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 81 NFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL 160 (580)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 160 (580)
.++...++.++..|.+.|..++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.|
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44556677888999999999999999999853 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043144 161 ISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGV 237 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (580)
+.+|++.|++++|.++|++| +..||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999 778999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144 238 GQAMKLLDEMRN--KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLA 315 (580)
Q Consensus 238 ~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 315 (580)
++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999986 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144 316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 395 (580)
+|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG 475 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 475 (580)
..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHh----C-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043144 476 LSR----E-------------------GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC 532 (580)
Q Consensus 476 ~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 532 (580)
|.+ + +..++|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 542 1 23468999999999999999999999999888899999999999999988888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 043144 533 KPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS 572 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 572 (580)
.|+..+|+.+++++.+. .++|..++++|...|+.|+-.
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999998432 368999999999999998764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-65 Score=538.13 Aligned_cols=484 Identities=19% Similarity=0.286 Sum_probs=463.1
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHG-DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLI 161 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 161 (580)
+..+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||+.+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44689999999999999999999999998764 67999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 043144 162 SGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241 (580)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 241 (580)
.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.++.+.|..+.+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999996 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144 242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG 321 (580)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 321 (580)
+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999997 5699999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043144 322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNT 401 (580)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (580)
+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 479999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCC
Q 043144 402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT-KGLKPDTITYSSLVGGLSREG 480 (580)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g 480 (580)
+|.+|++.|+.++|.++|++|.+.++.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 599999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
++++|.++++++ +..|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..|++.|.+.|++++|.++++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 999999998876 568999999999999999999999999999997542 4457899999999999999999999999
Q ss_pred HHHhCCCCCchhHHHHHhh
Q 043144 561 QLCSRGVVKKSSAEQVAVK 579 (580)
Q Consensus 561 ~~~~~g~~~~~~~~~~~v~ 579 (580)
.|.+.|+.++++++|+.++
T Consensus 553 ~m~~~g~~k~~g~s~i~~~ 571 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVK 571 (697)
T ss_pred HHHHcCCccCCCeeEEEEC
Confidence 9999999999999887553
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-65 Score=546.09 Aligned_cols=506 Identities=22% Similarity=0.300 Sum_probs=475.2
Q ss_pred hHHhhhcccCCCccccc--cccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 043144 59 EAFVQGHLNNGHISSGM--ENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTR 136 (580)
Q Consensus 59 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (580)
..++.++...|.+..+. ......++..+||.++.+|.+.|++++|+++|++|...|..||..+|+.++.+|++.|+.+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 34455566666554331 1223345778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999996 5899999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 043144 217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNI 296 (580)
Q Consensus 217 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 296 (580)
+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 468899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043144 297 ILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK 376 (580)
Q Consensus 297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (580)
++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+++.+.+++..+.+.|+.++..+++.++.+|++.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999986 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144 377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEE 456 (580)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 456 (580)
+++|.++|+.+ .||..+|+.+|.+|++.|+.++|.++|++|.+.++.||..||+.++.+|.+.|++++|.++|+.
T Consensus 540 ~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 99999999987 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043144 457 MR-TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT 535 (580)
Q Consensus 457 m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 535 (580)
|. +.|+.|+..+|+.++++|++.|++++|.+++++| .++||..+|++|+.+|...|+.+.+....+++.+.. +.+
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~ 690 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNS 690 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCC
Confidence 99 6799999999999999999999999999999998 368999999999999999999999999998888753 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhh
Q 043144 536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579 (580)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~v~ 579 (580)
...|..|.+.|...|+|++|.++.+.|.+.|+.++++++|+.|+
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 78888999999999999999999999999999999999998764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7e-65 Score=544.57 Aligned_cols=488 Identities=19% Similarity=0.283 Sum_probs=382.6
Q ss_pred HHhhhcccCCCccccc--cccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 043144 60 AFVQGHLNNGHISSGM--ENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRK 137 (580)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (580)
.++.++...|.+..+. ......++.++||.++.+|.+.|++++|+++|++|...|..||..+|+.++.+|.+.+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 3344455555443331 12223457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043144 138 ATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC 217 (580)
Q Consensus 138 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (580)
+.+++..+.+.|+.||+.+++.|+.+|++.|++++|..+|++|. .||..+|+.++.+|++.|++++|+++|++|...|+
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999996 57899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144 218 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII 297 (580)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 297 (580)
.||..+|+.++.+|++.|+++.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999888888888888888888888888888888888886 4677788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144 298 LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM 377 (580)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (580)
+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 88888888888888888888888888888888777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------------
Q 043144 378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNT--------------------- 436 (580)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------------------- 436 (580)
++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||..+|+.
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 777777766642 3555566666666666666666666655553 24555555554
Q ss_pred --------------HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 043144 437 --------------VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVI 502 (580)
Q Consensus 437 --------------l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 502 (580)
++++|++.|++++|.++|+++ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 555555555555555555554 4567777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMV-TRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..++++|.+.|++++|.+++++|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 77777777777777777777777777 4567777777777777777777777777777776
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-60 Score=498.80 Aligned_cols=479 Identities=17% Similarity=0.268 Sum_probs=441.3
Q ss_pred CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 043144 79 SLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYN 158 (580)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 158 (580)
.+.++..+|+.++.++.+.++++.|.+++..|...|..||..+++.++.+|++.|+++.|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999986 47999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043144 159 VLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES 235 (580)
Q Consensus 159 ~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 235 (580)
.++.+|++.|++++|+++|++| +..||..+|+.++.++++.|..+.+.+++..+.+.|+.||..+++.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 9999999999999999999999 7889999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144 236 GVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLA 315 (580)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 315 (580)
++++|.++|++|.. +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999964 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144 316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 395 (580)
.|.+.|++||..+++.|+++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999975 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSN-KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG 474 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 474 (580)
..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 588999999999999999999999999999876 57899999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH---HH----
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEA-TYTILIE---GI---- 546 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~---~~---- 546 (580)
+|...|+++.|..+++++.+.++. +..+|..|++.|++.|++++|.+++++|.+.|+...+. +|..+.. .+
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999999999999866543 57799999999999999999999999999998764432 3322110 00
Q ss_pred ----HhcCCHHHHHHHHHHHHhCCCCCchhH
Q 043144 547 ----AYEGLAKEALDLLNQLCSRGVVKKSSA 573 (580)
Q Consensus 547 ----~~~g~~~~A~~~~~~~~~~g~~~~~~~ 573 (580)
....-++...++..+|.+.|..|+...
T Consensus 582 ~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 582 RLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 011224566788899999998887543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-32 Score=302.06 Aligned_cols=470 Identities=14% Similarity=0.105 Sum_probs=290.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+...|++++|++.|+.+.... +........++..+.+.|++++|..+++.+.... +.++.++..++..|
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIY 475 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence 355666667777777777777777776652 2233445556666667777777777777666543 45566666677777
Q ss_pred HhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 165 CRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
...|++++|.+.|+++ ..+.+...+..++..+...|++++|.+.|+++.... +.+..++..+...+.+.|++++|..
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777665 223344556666666667777777777777666553 2345566666666666677777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
.++++.+.+ +.+...+..++..|...|++++|..+++++.+.. +.+...|..+..++...|++++|...|+.+.+..
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 766666553 2245556666666666666666666666665443 4455666666666666666666666666666543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
+.+...+..+..++...|++++|...++++.+..+. +..++..++..+...|++++|..+++.+.+.++ ++...+..+
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 709 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELE 709 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHH
Confidence 334455666666666666666666666666654322 455666666666666666666666666665532 244555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144 403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV 482 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 482 (580)
...+...|++++|...|+.+.... |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 666666666666666666666554 333455556666666666666666666666543 33555666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
++|...|+++.+..+. +..+++.++..+...|+ ++|+..++++.+.. +.++.++..++.++...|++++|.++++++
T Consensus 787 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666655432 55566666666666666 55666666666542 444555556666666666666666666666
Q ss_pred HhCCCC
Q 043144 563 CSRGVV 568 (580)
Q Consensus 563 ~~~g~~ 568 (580)
++.++.
T Consensus 864 ~~~~~~ 869 (899)
T TIGR02917 864 VNIAPE 869 (899)
T ss_pred HhhCCC
Confidence 665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-31 Score=295.23 Aligned_cols=469 Identities=15% Similarity=0.105 Sum_probs=275.8
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+.+.|++++|.++|+++... .+.+...+..+...+...|++++|...|+.+.... +........++..+
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHH
Confidence 34555566666666666666666666554 23344555566666666666666666666665544 23334444555666
Q ss_pred HhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 165 CRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
.+.|++++|+.+++++ ..+++..+|..++..+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666666666665 333445566666666666666666666666665543 2234455556666666666666666
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
.++.+.+.+ +.+..++..++..+...|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 2245556666666666666666666666665443 3344555556666666666666666666665442
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
+.+...|..+..++...|++++|...|+++.+... .+...+..+...+.+.|++++|...|+++.+..+ .+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 34455666666666666666666666666655432 2445555666666666666666666666655422 134456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144 403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV 482 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 482 (580)
+..+...|++++|..+++.+.+.. +++...+..+...+...|++++|...|+.+...+ |+..++..++.++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 666666666666666666665544 3344555556666666666666666666666542 3335555566666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
++|.+.++++.+..+. +...+..++..|...|++++|...|+++.+.. ++++.++..++..+...|+ ++|..+++++
T Consensus 753 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 6666666666554332 55566666666666666666666666666553 4555666666666666666 5566666666
Q ss_pred HhCCC
Q 043144 563 CSRGV 567 (580)
Q Consensus 563 ~~~g~ 567 (580)
.+..+
T Consensus 830 ~~~~~ 834 (899)
T TIGR02917 830 LKLAP 834 (899)
T ss_pred HhhCC
Confidence 65543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.6e-25 Score=244.92 Aligned_cols=467 Identities=14% Similarity=0.061 Sum_probs=266.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDII-PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
..+.+.+.+.|++++|++.|+.++... +|+.. ............|+.++|++.++++.+.. |.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 445566777777777777777776552 33321 11111122234577777777777777665 5566667777777777
Q ss_pred cCChhHHHHHHHHc-CCCC----------------------------------Ccch---------------------HH
Q 043144 167 LGEIDNALQVLERM-SVAP----------------------------------DVVT---------------------YN 190 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~~~~----------------------------------~~~~---------------------~~ 190 (580)
.|++++|+..++++ ..++ +... ..
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 77777777777665 1110 0000 00
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHH---------
Q 043144 191 TILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYN--------- 260 (580)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~--------- 260 (580)
..+..+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 12344556677777777777777654 2356667777777777777777777777777653221 111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--
Q 043144 261 ---VLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF-- 335 (580)
Q Consensus 261 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-- 335 (580)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++++.. +.+...+..+...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 12345566777777777777777653 3455566667777777777777777777777653 2233333333333
Q ss_pred ----------------------------------------HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043144 336 ----------------------------------------LCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK 375 (580)
Q Consensus 336 ----------------------------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (580)
+...|++++|++.|++.++..+. +...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33445555555555555544222 3344444555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhCCC
Q 043144 376 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI---------TYNTVIDGLSKVGK 446 (580)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~ 446 (580)
++++|...++++.+..+. +...+..+...+...++.++|...++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 555555555555443211 22222222223334444444444444332211111100 01122334445555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILAD 526 (580)
Q Consensus 447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 526 (580)
.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++.+|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555541 1334555666777777778888888888777766544 566777777777777888888877777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 527 MVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
+.+.. +.+...+..++.++...|++++|.++++++......
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 66542 345566667777777778888888888777765443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.4e-24 Score=237.36 Aligned_cols=467 Identities=14% Similarity=0.091 Sum_probs=343.5
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC------------------CCh-hhHH----------------------
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDI------------------PDI-IPCT---------------------- 123 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------~~~-~~~~---------------------- 123 (580)
..+..+...+...|++++|+..++++...... ++. ..+.
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677888889999999999999998654210 010 0010
Q ss_pred ------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcc---
Q 043144 124 ------------SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVV--- 187 (580)
Q Consensus 124 ------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--- 187 (580)
.....+...|++++|...|++..+.. |.+...+..++.+|.+.|++++|+..|++. ...|+..
T Consensus 262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 11334566788888888888887765 557777888888888888888888888876 3233321
Q ss_pred hH------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 043144 188 TY------------NTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD 255 (580)
Q Consensus 188 ~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 255 (580)
.| ......+.+.|++++|+..|++++... +.+...+..+...+...|++++|++.|+++.+... .+
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~ 418 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GN 418 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 12 122445667888888888888888764 23556667777888888888888888888877632 24
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 043144 256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ--------PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVV 327 (580)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (580)
...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.|+++++.. +.+..
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~ 496 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVW 496 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 556666666664 45678888777765432100 011234456667888999999999999999874 44567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------H
Q 043144 328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV---------T 398 (580)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~ 398 (580)
.+..+...|.+.|++++|...++++.+..+. ++..+..+...+...++.++|+..++.+......++.. .
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 7888999999999999999999999876433 55556566666778899999999998865432222221 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 478 (580)
+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|++.++.. +.+...+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 23456778899999999999872 24556677889999999999999999999999874 4467889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHH
Q 043144 479 EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC--KP---TEATYTILIEGIAYEGLAK 553 (580)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~ 553 (580)
.|++++|+..++.+.+..+. +...+..+..++...|++++|.+++++++...- +| +...+..++..+...|+++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 99999999999998875433 566777888999999999999999999986531 12 2246667788999999999
Q ss_pred HHHHHHHHHHh
Q 043144 554 EALDLLNQLCS 564 (580)
Q Consensus 554 ~A~~~~~~~~~ 564 (580)
+|.+.++++..
T Consensus 729 ~A~~~y~~Al~ 739 (1157)
T PRK11447 729 QALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHh
Confidence 99999999974
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5.3e-24 Score=199.06 Aligned_cols=445 Identities=15% Similarity=0.126 Sum_probs=360.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
...++.....+.|++.+|.+.....-+. .+.+....-.+-..+.+..+.+....--....+.. +.-..+|..+...+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 3577888899999999999988877655 23333333334445566666665544333333333 566789999999999
Q ss_pred hcCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHhHHHH
Q 043144 166 RLGEIDNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY-TILIEATCKESGVGQAMK 242 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 242 (580)
..|++++|+.+++.+ ...| ....|..+..++...|+.+.|.+.|.+.++.+ |+.... +.+....-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999998 4444 57789999999999999999999999999865 654433 334455566899999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
.|.+.++... -=.+.|..|...+..+|+.-.|+..|++..+.+ +.-...|..+...|...+.+++|...|..+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 9999887632 135679999999999999999999999998764 3335788899999999999999999999988763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-IVTYNT 401 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 401 (580)
+.....+..+...|...|.+|-|+..+++.++..+. -+..|+.|..++-..|++.+|.+.|.+.+.. .|+ ....+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHH
Confidence 445678888889999999999999999999987433 5678999999999999999999999999986 344 458899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCC
Q 043144 402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREG 480 (580)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 480 (580)
|...|...|.+++|..+|....+.. +.-...++.+...|-+.|++++|+..+++.+.. .|+ ...|+.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence 9999999999999999999988765 223567899999999999999999999999864 565 568999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT-EATYTILIEGI 546 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 546 (580)
+++.|.+.+.+++..++. -....+.|...|-..|+..+|+.-+++.++. +|| +..+-.++.+.
T Consensus 437 ~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 999999999999986533 3567889999999999999999999999975 555 55666666554
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.3e-23 Score=202.37 Aligned_cols=470 Identities=13% Similarity=0.094 Sum_probs=367.3
Q ss_pred ceeeeeccccccccCcchhhhhhcccccccccccccccchhhchhhHHhhhcccCCCccccccccCCCCCcccHHHHHHH
Q 043144 14 VSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRR 93 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (580)
+..-++.++++.+.+|+.+++..++++|+.+.....++..++.|........+ -.|..+.++
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a------------------es~Y~~gRs 316 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA------------------ESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH------------------HHHHHHHHH
Confidence 33446778888889999999999999998888877766666666553322211 367889999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----C
Q 043144 94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG----E 169 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~ 169 (580)
|+..|+++.|..+|.+............+..++..|.+.|+.+.+...|+.+.+.. |.+..+...|+..|...+ .
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999999999887433335667788999999999999999999999876 778889999999998875 5
Q ss_pred hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144 170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL----EKECYPDVITYTILIEATCKESGVGQAMKL 243 (580)
Q Consensus 170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 243 (580)
.++|..++.+. ..+.|...|-.+...+.+..-+.. +.+|..+. ..+-++.....|.+...+...|+++.|...
T Consensus 396 ~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 67788888877 456678899999888887665554 77766654 344457788899999999999999999999
Q ss_pred HHHHHHc---CCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHH
Q 043144 244 LDEMRNK---GCIPDV------VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERL 313 (580)
Q Consensus 244 ~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~ 313 (580)
|+..... ...+|. .+-..+...+-..++.+.|.+.|..+.+. .|+-+ .|.-++......+...+|..+
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 9998765 122222 23334667777888999999999999886 45543 344444444456889999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHh------------cCCHHHH
Q 043144 314 LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG-CTPNSLSYNPVLHGFCK------------EKKMDRA 380 (580)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~A 380 (580)
+..+...+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|+.+.-.|.+.|.+ .+..++|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 99998764 4577788888889999999999999777766542 22577777777776653 3457889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144 381 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK 460 (580)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (580)
+++|.++++..+. +.+.-+.+.-.++..|++++|..+|.+..+... ....+|..+..+|...|++..|+++|+...+.
T Consensus 632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987554 778889999999999999999999999998652 35678899999999999999999999997765
Q ss_pred -CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 461 -GLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 461 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
...-+..+...|..++.+.|.+.+|.+.+..+....+......||..+
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 444578899999999999999999999999998776664555555443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-23 Score=194.64 Aligned_cols=441 Identities=16% Similarity=0.118 Sum_probs=363.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 043144 122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDS 199 (580)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 199 (580)
...+..-..+.|++.+|.+.-..+-..+ +.+......+...+.+..+.+....--... ..+.-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4566777889999999999877665554 444445555667777777777665443333 3344577899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHHHHHHH
Q 043144 200 GKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY-NVLVNGICKEGRLDEAIKF 278 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~ 278 (580)
|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.... ..+.......|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999875 336789999999999999999999999999886 4554443 3455556678999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144 279 LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT 358 (580)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (580)
|.+..+.. +--...|..+...+-..|+...|++.|+++.+.+ +.-...|..|...|...+.++.|...+.+.....+.
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 99987753 3345789999999999999999999999998864 223568889999999999999999999998876332
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTV 437 (580)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 437 (580)
....+..+...|...|+.|-|+..|++.++. .|+ ...|+.|..++-..|++.+|.+.+....... +.-....+.+
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 5667888888899999999999999999986 444 4589999999999999999999999998876 3336778899
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN-VITYNSIMLGLCKAR 515 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 515 (580)
..+|...|.+++|..+|....+- .|. ....+.|...|.+.|++++|+..++++.+. .|+ ...|+.+...|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence 99999999999999999998874 344 557899999999999999999999999874 565 568999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHH
Q 043144 516 QTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVA 577 (580)
Q Consensus 516 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~ 577 (580)
+.+.|+..+.+++.-+ |.-...+..|+.+|..+|+..+|+.-+++..+..++.++....++
T Consensus 437 ~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred hHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 9999999999998653 333678899999999999999999999999999988887776654
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.2e-21 Score=204.23 Aligned_cols=462 Identities=11% Similarity=0.004 Sum_probs=284.5
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG- 163 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 163 (580)
..+..+.+.|...|++++|+..+++++.. .|.|...+..+.. .+++++|..+++++.... |.+..++..+...
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~l-dP~n~~~~~~La~----i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~ 152 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKR-HPGDARLERSLAA----IPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CcccHHHHHHHHH----hccChhHHHHHHHHHHhC-CCChhHHHHHHHHh
Confidence 35566777777777777777777777765 3344444443322 177777777777777765 4445555555554
Q ss_pred -------HHhcCChhHHHHHHHHcCCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-c
Q 043144 164 -------YCRLGEIDNALQVLERMSVAPDVVTYNT-ILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK-E 234 (580)
Q Consensus 164 -------~~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 234 (580)
|.+.++..++++ .+.....|+..+... +.+.|.+.|++++|++++.++.+.+. .+......+...|.. .
T Consensus 153 ~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQ 230 (987)
T ss_pred hccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhh
Confidence 666655555655 222232233433333 37777777777777777777777652 234445555556665 3
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHH-------------------
Q 043144 235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ-PNVITH------------------- 294 (580)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~------------------- 294 (580)
++ +++..+++.. +..++..+..++..|.+.|+.++|..++.++...... |...+|
T Consensus 231 ~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 55 5565554431 2235666667777777777777777666664322100 111110
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q 043144 295 --------------------------------------------------------------------------NIILRS 300 (580)
Q Consensus 295 --------------------------------------------------------------------------~~ll~~ 300 (580)
..+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 000111
Q ss_pred HHhcCChHHHHHHHHHHHHc-C-CCC------------------------------------------------------
Q 043144 301 MCSTGRWMDAERLLAEMVLK-G-CSP------------------------------------------------------ 324 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~-~-~~~------------------------------------------------------ 324 (580)
..+.|+.++|.++++..... + ...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 22334455555555544331 0 001
Q ss_pred ----------ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043144 325 ----------SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP 394 (580)
Q Consensus 325 ----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 394 (580)
+...+..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 12222233333332 3444555555544443 233322222334445677788888887776544 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG 474 (580)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 474 (580)
+...+..+..++.+.|++++|...+++..+.. ++....+..+.......|++++|...+++.++. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44445566667777888888888888877655 222333333334444568889999998888865 467788888888
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKE 554 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
++.+.|++++|...++++....+. +...+..+..++...|++++|+..++++++.. |.+...+..++.++...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887654 67788888888999999999999999988763 6678888999999999999999
Q ss_pred HHHHHHHHHhCCCCC
Q 043144 555 ALDLLNQLCSRGVVK 569 (580)
Q Consensus 555 A~~~~~~~~~~g~~~ 569 (580)
|...++++++..+..
T Consensus 696 A~~~l~~Al~l~P~~ 710 (987)
T PRK09782 696 TQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999998876543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=4.2e-21 Score=198.92 Aligned_cols=428 Identities=12% Similarity=0.046 Sum_probs=238.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
+......+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|+..++..++.. |.+...|..++.+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345566677777777777777777664 3455566667777777777777777777777665 4456667777777777
Q ss_pred cCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 167 LGEIDNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
.|++++|+..|..+ ..++ +......++..+.. ..+.......++.. +++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 77777777666554 1111 11111111111111 12222222222221 122222222222 21111111111112
Q ss_pred HHHHHcCCCCC-HhHHHHHHHHH---HhcCCHHHHHHHHHHhhhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 245 DEMRNKGCIPD-VVTYNVLVNGI---CKEGRLDEAIKFLNDMPSYG-C-QPNVITHNIILRSMCSTGRWMDAERLLAEMV 318 (580)
Q Consensus 245 ~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 318 (580)
....+. .++ ...+..+...+ ...+++++|.+.|++..+.+ . +.....|..+...+...|++++|...++..+
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 111 01111111111 12356777777777766543 1 2234456666666667777777777777776
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043144 319 LKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVT 398 (580)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 398 (580)
+.. +.....|..+...+...|++++|...|+++++.... +...|..+...+...|++++|+..|++.++..+. +...
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHH
Confidence 653 223456666677777777777777777777665332 5566677777777777777777777777665322 3446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI------TYSSL 472 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l 472 (580)
+..+..++.+.|++++|...|++..+.. +.+...|+.+...+...|++++|.+.|++.+......+.. .++..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 6666677777777777777777766543 3345666677777777777777777777766542111111 11111
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+..+...|++++|..+++++.+..+. +...+..++.++...|++++|++.|+++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22233357777777777776665433 4455666777777777777777777776654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=6.6e-21 Score=197.49 Aligned_cols=431 Identities=14% Similarity=0.058 Sum_probs=315.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHh
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAP-DVVTYNTILRTLCD 198 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 198 (580)
.+...+..+.+.|++++|+..|++.+.. .|++..|..+..+|...|++++|++.++++ ...| +..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556778899999999999999999876 467888999999999999999999999998 4444 56789999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144 199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF 278 (580)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (580)
.|++++|+..|..+...+...+. ....++..+.. ..+........+.. +++...+..+.. |...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 99999999988776654322222 12222222222 22333333333332 223333333333 2222222222222
Q ss_pred HHHhhhCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 279 LNDMPSYGCQPNV-ITHNIILRS---MCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
+....+. .+.. ..+..+... ....+++++|.+.|+.+++.+ .+.....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3222221 1111 111111111 134578999999999999864 2334567888889999999999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144 353 PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI 432 (580)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (580)
++..+. +...|..+...+...|++++|+..|+++++..+. +..++..+...+...|++++|...|++..+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 887432 4667888899999999999999999999886433 56789999999999999999999999999876 34567
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH------HHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVI------TYNS 506 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ 506 (580)
.+..+..++.+.|++++|+..|++.+... +.+...++.+...+...|++++|...|+++.+..+..+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 78888999999999999999999998753 4467889999999999999999999999998765432111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 507 IMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
....+...|++++|.+++++++... +.+...+..++.++.+.|++++|.++++++.+...
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 2333445799999999999998764 55566889999999999999999999999987643
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=3.2e-19 Score=188.15 Aligned_cols=454 Identities=12% Similarity=0.060 Sum_probs=313.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043144 92 RRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEID 171 (580)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 171 (580)
..+...|++++|+..|+++++. .|.+..++..++..|.+.|++++|+..+++..+.. |.|...+..+.. .++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~-dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~----i~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQ-VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAA----IPVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHH----hccCh
Confidence 3444559999999999999987 45568889999999999999999999999999886 455555555422 28999
Q ss_pred HHHHHHHHc--CCCCCcchHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHhHH
Q 043144 172 NALQVLERM--SVAPDVVTYNTILRT--------LCDSGKLNLAMEVLHKQLEKECYPDVITYTIL-IEATCKESGVGQA 240 (580)
Q Consensus 172 ~A~~~~~~~--~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A 240 (580)
+|..+++++ ..|.+..++..+... |.+.++..+++ + .......|+..+.... ...|.+.|++++|
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 999999999 333445566666665 66665444444 4 2332333445544444 8999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 241 MKLLDEMRNKGCIPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
+.++.++.+.+.. +......|..+|.. .++ +++..++.. .+..+...+..++..+.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 9999999998643 56667778888888 477 888888654 2246888899999999999999999988887643
Q ss_pred cCCC-CChhhH------------------------------HHHHHHH--------------------------------
Q 043144 320 KGCS-PSVVTF------------------------------NILINFL-------------------------------- 336 (580)
Q Consensus 320 ~~~~-~~~~~~------------------------------~~l~~~~-------------------------------- 336 (580)
.... |+..+| ..++..+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 2110 111111 0001111
Q ss_pred -------------------------------HhcCCHHHHHHHHHHhhhC-C-C--------------------------
Q 043144 337 -------------------------------CRKGLLGRAIDILEKMPKH-G-C-------------------------- 357 (580)
Q Consensus 337 -------------------------------~~~g~~~~a~~~~~~~~~~-~-~-------------------------- 357 (580)
.+.|+.++|.++|+..... + .
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 2234445555555444331 0 0
Q ss_pred ------------------------------------CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043144 358 ------------------------------------TP--NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTY 399 (580)
Q Consensus 358 ------------------------------------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 399 (580)
++ +...|..+..++.. ++.++|+..+.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 00 12223333333333 4555666666655554 3554444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144 400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479 (580)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 479 (580)
..+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++.++.. +++...+..+.......
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 44455556788888888888887554 2444455666777788888888888888887764 22333444444455567
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLL 559 (580)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
|++++|...++++.+.. |+...|..+..++.+.|++++|+..+++.+... |.+...+..++.++...|++++|++.+
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988764 467788888899999999999999999998774 666778888888999999999999999
Q ss_pred HHHHhCCCCCc
Q 043144 560 NQLCSRGVVKK 570 (580)
Q Consensus 560 ~~~~~~g~~~~ 570 (580)
+++.+..+...
T Consensus 667 ~~AL~l~P~~~ 677 (987)
T PRK09782 667 ERAHKGLPDDP 677 (987)
T ss_pred HHHHHhCCCCH
Confidence 99988765444
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3.5e-20 Score=191.25 Aligned_cols=331 Identities=13% Similarity=0.042 Sum_probs=275.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
....+..+.+.|++++|+.+++..+.. .+.+...+..++.++...|++++|...|+++.... |.+...+..++..+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~-~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT-AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh-CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 445678899999999999999999887 45556677777888889999999999999999887 6778889999999999
Q ss_pred cCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 167 LGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
.|++++|+..++++ .. +.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998 43 445778899999999999999999999988776533 23333333 3478899999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHc
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMD----AERLLAEMVLK 320 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~ 320 (580)
+.+.+....++...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+.+.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998876433444555666778899999999999999998765 5567788889999999999986 89999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 043144 321 GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-VTY 399 (580)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~ 399 (580)
. +.+...+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|+..|+++...+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 4 456778999999999999999999999999987544 56678888899999999999999999998763 443 344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 400 NTLLTALCKDGKVDVAVEILNQLSNKH 426 (580)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 426 (580)
..+..++...|+.++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456778899999999999999988765
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.9e-19 Score=189.91 Aligned_cols=412 Identities=12% Similarity=0.054 Sum_probs=236.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHh
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCD 198 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~ 198 (580)
...-.+......|+.++|++++....... +.+...+..+..++...|++++|.++|++. .. |.+...+..++.++..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344445566666666666666665532 444445666666666666666666666665 22 3344555666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144 199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF 278 (580)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (580)
.|++++|+..++++++.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..++..+...|..++|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 666666666666666653 22334 666666666667777777777766665322 444555566666666666667766
Q ss_pred HHHhhhCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCChh-hHH----HHHHHHHh
Q 043144 279 LNDMPSYGCQPNV------ITHNIILRSMC-----STGRW---MDAERLLAEMVLK-GCSPSVV-TFN----ILINFLCR 338 (580)
Q Consensus 279 ~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~ 338 (580)
++.... .|+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 665543 1221 01111122111 11223 5566666666643 1122211 110 11223345
Q ss_pred cCCHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHH
Q 043144 339 KGLLGRAIDILEKMPKHGCT-PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP---DIVTYNTLLTALCKDGKVDV 414 (580)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 414 (580)
.|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 57777777777777765422 221 12224566777777777777777766543211 12344555556677777777
Q ss_pred HHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043144 415 AVEILNQLSNKHC-----------SPV---LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG 480 (580)
Q Consensus 415 A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 480 (580)
|...++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..++..+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 7777777765431 122 1234455666777777777777777776653 445666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
++++|++.++++....+. +...+..++..+...|++++|..+++++++. .|+......+-+
T Consensus 408 ~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~ 468 (765)
T PRK10049 408 WPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLAR 468 (765)
T ss_pred CHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 777777777777765433 4556666666777777777777777777765 444443333333
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.6e-21 Score=189.62 Aligned_cols=299 Identities=18% Similarity=0.161 Sum_probs=161.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 043144 267 CKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS---VVTFNILINFLCRKGLLG 343 (580)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 343 (580)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554432 22333444444445555555555555554444321111 123444555555555555
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHH
Q 043144 344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI----VTYNTLLTALCKDGKVDVAVEIL 419 (580)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 419 (580)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555432 224445555555555566666666666555544322211 12344555556666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144 420 NQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP 499 (580)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 499 (580)
+++.+.. +.+...+..+...+.+.|++++|.++|+++...+......++..++.+|...|++++|...++++.+.. |
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 6665543 223445555666666666666666666666654322223455666666666677777777766666543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCchh
Q 043144 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY---EGLAKEALDLLNQLCSRGVVKKSS 572 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 572 (580)
+...+..++..+.+.|++++|..+++++++. .|+...+..++..+.. .|+.+++..+++++.++++.++|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3344466666666677777777777666654 4555566655555443 446666777777666666655543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4e-20 Score=182.34 Aligned_cols=479 Identities=13% Similarity=0.089 Sum_probs=365.7
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDI--PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL 160 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 160 (580)
++...+.|.+.|.-.|++..+..+...++..... .-...|..++++|-.+|++++|..+|-...+.....-+..+..|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4567888889999999999999999999876321 22346889999999999999999999998877522224556678
Q ss_pred HHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043144 161 ISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSG----KLNLAMEVLHKQLEKECYPDVITYTILIEATCKE 234 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 234 (580)
++.|...|+++.+...|+++ ..|.+..+...|+..|...+ ..+.|..++.+..+.. +.|...|..+...+...
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 99999999999999999998 55556778888888888775 5677888888777754 44777888887777655
Q ss_pred CCHhHHHHHHHHHH----HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCC------CHHHHHHHHHHH
Q 043144 235 SGVGQAMKLLDEMR----NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY---GCQP------NVITHNIILRSM 301 (580)
Q Consensus 235 g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~------~~~~~~~ll~~~ 301 (580)
..+.. +..|..+. ..+-.+.+...|.+...+...|.+++|...|...... ...+ +..+-..+...+
T Consensus 428 d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 44433 66666544 3444567889999999999999999999999987653 1122 222344566677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144 302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI 381 (580)
Q Consensus 302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 381 (580)
-..++++.|.+.|..+++.. +.-+..|.-++.+....++..+|...+..+...+- .++..++.+...+.....+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccc
Confidence 77889999999999999873 33334555555455556888999999999887643 37788888888999999999999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 043144 382 EYLEIMVSRG-CYPDIVTYNTLLTALCK------------DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE 448 (580)
Q Consensus 382 ~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 448 (580)
.-|+...+.- ..+|.++..+|...|.+ .+..++|+++|.++...+ +.|...-|.+.-.++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 8777776542 23678888777776543 345788999999988876 556777788888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-RLGVRPNVITYNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
+|..+|.+..+.. ..+..+|..+.++|...|++..|+++|+... +.....++.+.+.|..++...|++.+|.+.+..+
T Consensus 664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999998874 3356778899999999999999999999975 4455667889999999999999999999999888
Q ss_pred HHcCCCCCHH-HHHHHHH------------------HHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 528 VTRSCKPTEA-TYTILIE------------------GIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 528 ~~~~~~~~~~-~~~~l~~------------------~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
.... +.+.. .|+..+. .....+..+.|.++|..+...+-.
T Consensus 743 ~~~~-p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 743 RHLA-PSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHhC-CccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7653 33322 2222211 123446788899999999887765
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.9e-21 Score=188.68 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
..++..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 333444444444444444444443321 22333344444444444444444444444433
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.2e-19 Score=187.22 Aligned_cols=358 Identities=11% Similarity=0.038 Sum_probs=284.4
Q ss_pred HHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043144 94 LVRNGELEEGFKFLESMVYH--GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEID 171 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 171 (580)
+.++.+++.---+|.+..+. ....+..-...++..+.+.|++++|..+++.+.... +.+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 44555665544455444322 011223344556777899999999999999999876 556667777788888899999
Q ss_pred HHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144 172 NALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 249 (580)
Q Consensus 172 ~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 249 (580)
+|++.|+++ . .|.+...+..++..+.+.|++++|+..+++++... +.+...+..++..+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998 3 34557789999999999999999999999999864 34577888899999999999999999998877
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144 250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF 329 (580)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 329 (580)
.... +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6433 33344333 3478899999999999998776433444555566778899999999999999999875 4567788
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 330 NILINFLCRKGLLGR----AIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 405 (580)
Q Consensus 330 ~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 405 (580)
..+...+...|++++ |...|+++.+..+. +...+..+...+...|++++|+..+++..+..+. +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999986 89999999987543 6778999999999999999999999999987433 45577888999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144 406 LCKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMKLLEEMRTK 460 (580)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (580)
+.+.|++++|...++.+...+ |+. ..+..+..++...|++++|...|++..+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999998865 443 33444577889999999999999999876
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.8e-19 Score=188.68 Aligned_cols=419 Identities=11% Similarity=-0.011 Sum_probs=317.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043144 140 RVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC 217 (580)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (580)
..++. ...+ +.++....-.+......|+.++|++++.+. . .+.+...+..+...+...|++++|.++|++.+...
T Consensus 3 ~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~- 79 (765)
T PRK10049 3 SWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE- 79 (765)
T ss_pred hhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 44555 3233 555666666777888899999999999998 3 33445569999999999999999999999998874
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144 218 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII 297 (580)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 297 (580)
+.+...+..++..+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~l 156 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEY 156 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456677888899999999999999999998874 33566 8889999999999999999999998874 4466667778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHh-----cCCH---HHHHHHHHHhhhC-CCCCCHh
Q 043144 298 LRSMCSTGRWMDAERLLAEMVLKGCSPSV------VTFNILINFLCR-----KGLL---GRAIDILEKMPKH-GCTPNSL 362 (580)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~ 362 (580)
..++...+..++|++.++.+.. .|+. .....++..... .+++ ++|+..++.+.+. ...|+..
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 8888889999999998886654 1221 112222333221 2234 7788888888754 1222221
Q ss_pred -hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHH
Q 043144 363 -SYN----PVLHGFCKEKKMDRAIEYLEIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP---VLIT 433 (580)
Q Consensus 363 -~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 433 (580)
.+. ..+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|...|+++....... ....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 111 1134456779999999999999887532 333 22335778999999999999999987654211 1345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGL-----------KPD---TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP 499 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 499 (580)
...+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+.+++++....+.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~- 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG- 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 66677788999999999999999987521 123 234566778899999999999999999887654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK 570 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 570 (580)
+...+..++..+...|++++|++.+++++... |.+...+..++..+...|++++|..+++++++..+..+
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 68889999999999999999999999999863 56678888888999999999999999999999765443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=6.2e-18 Score=174.80 Aligned_cols=431 Identities=13% Similarity=0.096 Sum_probs=225.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDI-IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
+-...+.|+++.|+..|+++++.. |.+. .++ .++..+...|+.++|+..+++..... +........++..|...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 345567788888888888887652 2221 233 66777777788888888888777322 2233333444567777788
Q ss_pred hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 043144 170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM 247 (580)
Q Consensus 170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 247 (580)
+++|+++|+++ ..|.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 88888888887 333445566677777788888888888888777654 45445544444444456665688888888
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHhc---------CC---hHHHHHH
Q 043144 248 RNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHN--IILRSMCST---------GR---WMDAERL 313 (580)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~---------~~---~~~a~~~ 313 (580)
.+.. +.+...+..+..++.+.|-...|+++..+-+..- .+....+. ..+.-..+. .+ .+.|+.-
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 7764 2256666777777777887777777766543211 11111110 000001111 11 1223333
Q ss_pred HHHHHHc-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 314 LAEMVLK-GCSPSV-VTF----NILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIM 387 (580)
Q Consensus 314 ~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 387 (580)
++.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3333321 111111 111 1122334445555555555555555544333444555555555555555555555555
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCCHH
Q 043144 388 VSRGC-----YPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC-----------SPV---LITYNTVIDGLSKVGKTE 448 (580)
Q Consensus 388 ~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~ 448 (580)
..... .++......|.-++...+++++|..+++.+.+... .|+ ...+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 43211 11222234455555555555555555555554211 011 112233344445555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
+|.+.++++.... +-|......+...+...|.+.+|++.++.+....+. +..+....+.++...+++++|..+.+.+.
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5555555554432 334455555555555555555555555444433222 34444445555555555555555555554
Q ss_pred Hc
Q 043144 529 TR 530 (580)
Q Consensus 529 ~~ 530 (580)
..
T Consensus 512 ~~ 513 (822)
T PRK14574 512 SR 513 (822)
T ss_pred hh
Confidence 43
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.3e-17 Score=172.55 Aligned_cols=436 Identities=14% Similarity=0.055 Sum_probs=329.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHcCCCC-CcchHHHH--HHHHHhcCC
Q 043144 126 IRGFCKVGKTRKATRVMEIVEDSGAVPD-VITYNVLISGYCRLGEIDNALQVLERMSVAP-DVVTYNTI--LRTLCDSGK 201 (580)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l--~~~~~~~g~ 201 (580)
+....+.|+++.|+..|+++.+.. |.+ +..+ .++..+...|+.++|+..+++.- .| +...+..+ +..+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence 334689999999999999999876 333 2344 88888889999999999999985 33 33334444 568888999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 202 LNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLND 281 (580)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (580)
+++|+++|+++++..+. +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999998633 4667778888999999999999999999877 45555565555555556777679999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH------HHHHHHH---H--hcC---CHHHHHH
Q 043144 282 MPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF------NILINFL---C--RKG---LLGRAID 347 (580)
Q Consensus 282 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g---~~~~a~~ 347 (580)
+.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ..+++.- . ... -.+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 99875 556778888899999999998888877654322 11111111 1111110 0 112 2455666
Q ss_pred HHHHhhhC-CCCCCH-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043144 348 ILEKMPKH-GCTPNS-LSY----NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421 (580)
Q Consensus 348 ~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (580)
-++.+... +..|.. ..| .-.+-++...+++.++++.|+.+...+......+...+.++|...+..++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66666552 122322 222 234567888999999999999999887665566889999999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhCCCH
Q 043144 422 LSNKH-----CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL-------------KPDTI-TYSSLVGGLSREGKV 482 (580)
Q Consensus 422 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~l~~~~~~~g~~ 482 (580)
+.... .+++......|.-+|...+++++|..+++++.+... .||-. .+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86643 123444467889999999999999999999987321 22322 344567778999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.+|++.++++....|. |......+...+...|.+.+|...++.+... -|.+..+....+.++...|++++|..+.+.+
T Consensus 433 ~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 433 PTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999887665 8999999999999999999999999777655 3556778888999999999999999999999
Q ss_pred HhCCCCCch
Q 043144 563 CSRGVVKKS 571 (580)
Q Consensus 563 ~~~g~~~~~ 571 (580)
.+..++..+
T Consensus 511 ~~~~Pe~~~ 519 (822)
T PRK14574 511 ISRSPEDIP 519 (822)
T ss_pred HhhCCCchh
Confidence 888765543
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=4.2e-15 Score=140.99 Aligned_cols=457 Identities=12% Similarity=0.063 Sum_probs=227.4
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043144 95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNAL 174 (580)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 174 (580)
+...+.++|+.++.++++. .|.+...|.+ |.+..-++.|..+++...+. +|.+..+|..-...--.+|+.+...
T Consensus 387 VelE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3344455566666665554 3333333332 34444555666666655543 2555555555555545555555555
Q ss_pred HHHHHc-------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144 175 QVLERM-------SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD--VITYTILIEATCKESGVGQAMKLLD 245 (580)
Q Consensus 175 ~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 245 (580)
.++.+. |+.-+...|..=...|-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 554443 3334444455555555555555555555555554443321 2345555555555555555555555
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144 246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS 325 (580)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (580)
..++. ++.+...|...+..--..|..++-..+|++....- +.....|......+-..|+...|..++..+.+.. +.+
T Consensus 541 ~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 541 HALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred HHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 55443 12234444444444444455555555555544331 2233334444444444455555555555554442 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 043144 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLT 404 (580)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~ 404 (580)
...|..-+..-.....++.|..+|.+.... .|+...|.--+...--.++.++|++++++.++. .|+-. .|..+.+
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 444545555555555555555555544433 233344443333333444555555555554443 23332 4455555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043144 405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE 484 (580)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 484 (580)
.+-+.++++.|.+.|..-.+. ++..+..|..+...-.+.|++-.|..+|++..-++ +-+...|...+..-.+.|+.++
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 555555555555554443332 12334444444444445555555555555554443 2244445555555555555555
Q ss_pred HHHHHHHHHhCCC-----------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043144 485 AIKLFHDLERLGV-----------------------------RPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT 535 (580)
Q Consensus 485 A~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 535 (580)
|..+..++.+.-+ ..|+.....+...+....+++.|++.|.+.++.+ +..
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~ 850 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN 850 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence 5544444432211 1244445556666666667777777777777653 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
..+|.-+...+.++|.-++-.+++.+.....+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 56677777777777776666777766665543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=4.4e-15 Score=140.81 Aligned_cols=468 Identities=11% Similarity=0.042 Sum_probs=383.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
+.+---..+...=.++++.++++ .|.++..|... ....+.+.|+.++.+..+.= +.+...| .+|++..-+
T Consensus 353 ~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~dLw----lAlarLetY 422 (913)
T KOG0495|consen 353 LKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMDLW----LALARLETY 422 (913)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHH
Confidence 34444445556667888998887 67777777765 45567777999999988753 4445444 456677788
Q ss_pred hHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 171 DNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL----EKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 171 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
+.|..++.+. .++.+...|.+-...--.+|+.+...+++.+.+ ..|+..+...|..=...|-+.|..-.+..+.
T Consensus 423 enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 423 ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence 9999999998 667788899988888889999999988887654 4678888999999999999999999999999
Q ss_pred HHHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 245 DEMRNKGCIP--DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 245 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
...+..|+.- -..+|+.-.+.|.+.+.++-|..+|....+.- +.+...|......--..|..++-..+++++... +
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~ 580 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-C 580 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-C
Confidence 9998877653 24689999999999999999999999988753 556778888777777889999999999999987 3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
+-....|...+..+-..|++..|..++..+.+.... +...|-..+.....+.++++|..+|.+.... .|+..+|..-
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 556677877788888899999999999999887554 7788999999999999999999999998764 5777788777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144 403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV 482 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 482 (580)
+....-.++.++|++++++..+.. +.-...|..+.+.+-+.++.+.|.+.|..=.+.. +-....|..|...--+.|.+
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcch
Confidence 777788899999999999988865 3335678888999999999999999998766653 33556787888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCC
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR-----------------------------SCK 533 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------------~~~ 533 (580)
-.|..++++..-.++. +...|...+.+-.+.|..+.|..++.+++.. .+.
T Consensus 736 ~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 736 VRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred hhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 9999999999877766 8889999999999999999998887666543 123
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHH
Q 043144 534 PTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQV 576 (580)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 576 (580)
.|+.....++..+....+++.|++.|++..+.+.+..+.+.|.
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 4567777888889999999999999999999998888887765
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7.8e-15 Score=134.06 Aligned_cols=473 Identities=12% Similarity=0.018 Sum_probs=353.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
.|.....-=..++++..|..+|++++.- ...+...|...+.+-.+......|..++++.+..- |.-...|.-.+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdv-d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDV-DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 4455555555678888999999999876 46677889999999999999999999999988764 333446666777767
Q ss_pred hcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 166 RLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
..|++..|.++|++. ...|+..+|.+.|..-.+.+.++.|..+|++.+-. .|++.+|.-.+..-.+.|++..|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 799999999999986 88999999999999999999999999999998864 499999999999999999999999999
Q ss_pred HHHHHc-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCh---HHHHH-----
Q 043144 245 DEMRNK-GC-IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN--VITHNIILRSMCSTGRW---MDAER----- 312 (580)
Q Consensus 245 ~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~---~~a~~----- 312 (580)
+.+.+. |- .-+...+.+.+..-..+..++.|.-+|.-..+.= +.+ ...|..+...--+-|+. ++++-
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988764 10 1123345555555556778899999888776541 222 33444444333344543 33332
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--hhHHHHHHH--------HHhcCCHHHHHH
Q 043144 313 LLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS--LSYNPVLHG--------FCKEKKMDRAIE 382 (580)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~~A~~ 382 (580)
-|+.+++.+ +.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|...|-. -....+.+.+.+
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 234444443 567788888899888999999999999999886 33321 122222211 124688999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 383 YLEIMVSRGCYPDIVTYNTLLTAL----CKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
+|+..++. ++....|+..+--+| .++.++..|.+++..+.... |...+|...|..-.+.++++.+..++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999874 333455665555444 46789999999998887654 888899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043144 459 TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV-RPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEA 537 (580)
Q Consensus 459 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 537 (580)
+-+ +-+-.+|......-...|+.+.|..+|+-+++... ......|.+.|..-...|.+++|..+++++++. .+...
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~k 541 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVK 541 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccch
Confidence 875 44778888888888899999999999999886432 223456777777778899999999999999976 45556
Q ss_pred HHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhCCCCCch
Q 043144 538 TYTILIEGIA-----YEG-----------LAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 538 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~g~~~~~ 571 (580)
+|...+..-. +.| ....|+.+|+++...--..++
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 7777765433 334 566888888887654433333
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.8e-15 Score=136.06 Aligned_cols=440 Identities=13% Similarity=0.052 Sum_probs=345.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHH
Q 043144 117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILR 194 (580)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 194 (580)
-+...|...+.--..++++..|.++|++.+..+ ..+...|...+.+-+++.++..|..+++++ ..|.-...|...+.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 355677777777788999999999999999877 778889999999999999999999999998 34444557888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144 195 TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE 274 (580)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (580)
.--..|++..|.++|++-.+. .|+...|.+.|..-.+.+.++.|..+++...-. .|++..|--.+..-.++|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 888899999999999999885 599999999999999999999999999998764 5899999999998899999999
Q ss_pred HHHHHHHhhhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH--
Q 043144 275 AIKFLNDMPSY-G-CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS--VVTFNILINFLCRKGLLGRAIDI-- 348 (580)
Q Consensus 275 A~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~-- 348 (580)
|..+|....+. | -.-+...+.+...--..++.++.|.-+|+-.+.. ++.+ ...|..+...--+.|+.......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999987653 1 0112334444444445678899999999998876 2333 34555555555566765544432
Q ss_pred ------HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH--------HHHhcCCh
Q 043144 349 ------LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV--TYNTLLT--------ALCKDGKV 412 (580)
Q Consensus 349 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~--------~~~~~g~~ 412 (580)
++.+++.+ +.|-.+|--.+..-...|+.+...++|++.+.. +.|-.. .|...|- .-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455543 337788888888888899999999999999875 344221 2322221 12356789
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144 413 DVAVEILNQLSNKHCSPVLITYNT----VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKL 488 (580)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 488 (580)
+.+.++++...+. +|....||.- ......++.+...|.+++...+ |.-|...++...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999988873 3444445444 4444457899999999999887 6678889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
+++.++.++. |..+|...+..-...|++++|..+|.-++.... ......|...++.-...|.++.|+.+++++++...
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999998866 888999998888899999999999999986532 22355788888888999999999999999998764
Q ss_pred C
Q 043144 568 V 568 (580)
Q Consensus 568 ~ 568 (580)
-
T Consensus 539 h 539 (677)
T KOG1915|consen 539 H 539 (677)
T ss_pred c
Confidence 3
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.1e-17 Score=146.76 Aligned_cols=456 Identities=14% Similarity=0.111 Sum_probs=322.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPC-TSLIRGFCKVGKTRKATRVMEIVEDSGAVPD----VITYNV 159 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 159 (580)
+...+|.+.|..+.-+.+|+..|+-.++....|+.... ..+.+.+.+...+.+|++.|+..++.-+..+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34567788888899999999999999888777776543 3566778999999999999988877532222 334556
Q ss_pred HHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------ChhhHHH
Q 043144 160 LISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP------------DVITYTI 226 (580)
Q Consensus 160 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~ 226 (580)
++-.+.+.|+++.|+.-|+.. ...|+..+-..|+-++...|+.++..+.|.+++.....| +....+.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 666778899999999999986 667888887777778888999999999999998753333 2222322
Q ss_pred HHH-----HHHhcC--CHhHHHHHHHHHHHcCCCCCHhH---H----------H--------HHHHHHHhcCCHHHHHHH
Q 043144 227 LIE-----ATCKES--GVGQAMKLLDEMRNKGCIPDVVT---Y----------N--------VLVNGICKEGRLDEAIKF 278 (580)
Q Consensus 227 li~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~----------~--------~l~~~~~~~g~~~~A~~~ 278 (580)
.|. -.-+.+ +.++++-.-..+..--+.|+-.. | . .-..-+.++|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 11222222222221112222110 1 0 112357789999999999
Q ss_pred HHHhhhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 279 LNDMPSYGCQPNVITHNII--LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 356 (580)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 356 (580)
+.-..+.+-......-+.+ +..+....++..|.++-+..+..+ .-+......-.+.....|++++|.+.+++.+..
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n- 519 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN- 519 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-
Confidence 9888764322222222222 222233456888888877776542 223333333333445679999999999999886
Q ss_pred CCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144 357 CTPNSLSYNP---VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT 433 (580)
Q Consensus 357 ~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 433 (580)
|...-.+ +.-.+-..|+.++|++.|-++..- ...+..++..+...|-...+...|++++.+.... ++.|+..
T Consensus 520 ---dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 520 ---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred ---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 4333333 334567789999999999877542 2346678888889999999999999999776653 4667888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG-LC 512 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 512 (580)
..-+.+.|-+.|+-..|++++-+--.. ++.+.++...|...|....-+++++.+|+++.- +.|+..-|..++-. +.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 999999999999999999987654443 567888999999999999999999999999865 57899999877655 55
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144 513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL 551 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+.|++++|.++++...++ +|.|..++..|++.+...|-
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 789999999999998876 78999999999999877774
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=1.3e-14 Score=143.03 Aligned_cols=471 Identities=17% Similarity=0.155 Sum_probs=337.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
.++.+...|++++|.+++.++++. .|.+...|..|...|-.+|+.+++...+-.+.... |.|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 344555569999999999999998 67778899999999999999999998887776665 7788999999999999999
Q ss_pred hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH----HHHHHHhcCCHhHHHHH
Q 043144 170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTI----LIEATCKESGVGQAMKL 243 (580)
Q Consensus 170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~ 243 (580)
++.|.-.|.++ -.|++......-...|-+.|+...|..-|.++.....+.|..-+.. ++..+...++-+.|.+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998 4456666677778899999999999999999999864333333333 34556677777999999
Q ss_pred HHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---------------------------CCHHHHH
Q 043144 244 LDEMRNKG-CIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ---------------------------PNVITHN 295 (580)
Q Consensus 244 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~ 295 (580)
++.....+ -..+...++.++..+.+...++.+......+...... ++...+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 99887632 2335667889999999999999999888877652112 2222211
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043144 296 IILRSMCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK 373 (580)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (580)
+.-++...+..+....+.....+.. ...+...+.-+..+|...|++.+|+.+|..+.......+...|..+..+|..
T Consensus 383 -l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 -LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred -HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 2223444455555555555555555 3335568889999999999999999999999988666678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhC
Q 043144 374 EKKMDRAIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILNQLSNK--------HCSPVLITYNTVIDGLSKV 444 (580)
Q Consensus 374 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~ 444 (580)
.|.+++|.+.|+.++.. .|+. .....|...+.+.|+.++|.+.++.+... ...|.....-...+.+...
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999999999986 4444 47778888899999999999999996532 2334444445566777888
Q ss_pred CCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH------HhCC
Q 043144 445 GKTEQAMKLLEEMRTKG----------------------LKPDTITYSSLVGGLSREGKVDEAIKLFHDL------ERLG 496 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~ 496 (580)
|+.++-......|+... ..-...+...++.+-.+.++.....+....- ...+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 98887666555554321 1112222333444444444422222211111 1112
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 497 VRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSC--KPTE---ATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 497 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
..-+ ...+..++.++.+.+++++|..+...+..... .++. ..-...+.+.+..+++..|..+++.|+..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2111 13456677888999999999999998876522 1222 22344556778899999999999999876
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=8.4e-15 Score=132.19 Aligned_cols=334 Identities=16% Similarity=0.229 Sum_probs=238.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 92 RRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIR--GFCKVGKTRKA-TRVMEIVEDSGAVPDVITYNVLISGYCRLG 168 (580)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 168 (580)
-....+|+..++--+|+.|...|.+.+...-..++. +|....++--| .+.|-.|.+.| ..+..+| +.|
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G 193 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSG 193 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccc
Confidence 345667888888888888888877666655544443 33444444322 24454555444 3333333 234
Q ss_pred ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144 169 EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 248 (580)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 248 (580)
+..+ -+|+.. |....++..+|.++|+-.+.+.|.+++.+......+.+..+||.+|.+-. +....++..+|.
T Consensus 194 ~vAd--L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMi 265 (625)
T KOG4422|consen 194 AVAD--LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMI 265 (625)
T ss_pred cHHH--HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHH
Confidence 4333 344443 56778899999999999999999999999888777888899999987743 233378899999
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHH----HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc--C
Q 043144 249 NKGCIPDVVTYNVLVNGICKEGRLDEA----IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMD-AERLLAEMVLK--G 321 (580)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~ 321 (580)
.....||..|+|+++++..+.|+++.| ++++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++... |
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 988999999999999999999987754 5677888999999999999999998888877644 55555555532 2
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 322 ------CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG----CTPN---SLSYNPVLHGFCKEKKMDRAIEYLEIMV 388 (580)
Q Consensus 322 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 388 (580)
.+.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345567788888888899998888876554321 1222 2335667777888888999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 389 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS 442 (580)
Q Consensus 389 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (580)
-.-.-|...+...++.+..-.|.++-..+++..+...|..........++..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 777778888888889998889999999999988887664443333333444444
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.1e-13 Score=125.00 Aligned_cols=431 Identities=15% Similarity=0.181 Sum_probs=310.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhH-HHHHHHHc-CC-CCCcchHHHHHH
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC--RLGEIDN-ALQVLERM-SV-APDVVTYNTILR 194 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~-A~~~~~~~-~~-~~~~~~~~~l~~ 194 (580)
.+-+.++. ...+|....+.-+|+.|...|++.+...-..|...-+ ...++-- -.+.|-.| .. .....+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 44556665 4778999999999999999998888877666654433 3333322 23445455 22 2334455
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144 195 TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE 274 (580)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (580)
+.|...+ -+|+. .+.+..++..+|.+.++-...+.|.+++++..+...+.+..+||.+|.+-.-..
T Consensus 191 ---K~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~---- 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV---- 256 (625)
T ss_pred ---ccccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----
Confidence 3444433 22332 234678999999999999999999999999998877889999999987644322
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHH
Q 043144 275 AIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDA----ERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGR-AIDIL 349 (580)
Q Consensus 275 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~ 349 (580)
..++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 267899999999999999999999999999988765 5677888999999999999999999998877644 44444
Q ss_pred HHhhh----CCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCChHH
Q 043144 350 EKMPK----HGC----TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG----CYPDI---VTYNTLLTALCKDGKVDV 414 (580)
Q Consensus 350 ~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~ 414 (580)
.++.. ..+ +.|..-|...|..|.+..+.+-|.++..-+.... +.|+. .-|..+..+.++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 112 2245567778888889999998988877655321 12232 345667788888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CH--------H--
Q 043144 415 AVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG-KV--------D-- 483 (580)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~--------~-- 483 (580)
-...|+.+.-.-..|+..+...++.+..-.|+++-.-+++.+++..|..-+......++..+++.. +. .
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 999999998877778888888999999999999999999999888775545555555555555443 11 0
Q ss_pred ---HHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc
Q 043144 484 ---EAIKLF-------HDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC----KPTEATYTILIEGIAYE 549 (580)
Q Consensus 484 ---~A~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 549 (580)
-|..++ .++... .......+..+..+.+.|++++|.+++.-..+.+- .|.......+.+.-.+.
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 011111 122222 33455677777788999999999999999876532 34444555677777889
Q ss_pred CCHHHHHHHHHHHHhCCCCCchh
Q 043144 550 GLAKEALDLLNQLCSRGVVKKSS 572 (580)
Q Consensus 550 g~~~~A~~~~~~~~~~g~~~~~~ 572 (580)
.+...|..+++-|...+++.-.+
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhhH
Confidence 99999999999998888766543
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=5.7e-14 Score=138.61 Aligned_cols=446 Identities=15% Similarity=0.090 Sum_probs=312.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144 119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTL 196 (580)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 196 (580)
.......++.+...|++++|.+++.++++.. |.....|..|+..|-+.|+.+++...+-.+ -.|.|...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3334444555566699999999999999987 788899999999999999999999987766 4466788999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHhcCCH
Q 043144 197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYN----VLVNGICKEGRL 272 (580)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 272 (580)
.+.|.++.|.-.|.++++.+ +++....---+..|-+.|+...|...|.++.....+.|..-.. ..+..+...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999986 3455555556778899999999999999999874322322222 345567778888
Q ss_pred HHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCC
Q 043144 273 DEAIKFLNDMPSY-GCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG---------------------------CSP 324 (580)
Q Consensus 273 ~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~ 324 (580)
+.|.+.++..... +-..+...++.++..+.....++.+........... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999998887652 224455678888888999999999998887776521 112
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHG--CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
+..++ .++-++......+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 22221 12222333333333444444444444 3445667888899999999999999999999987666677799999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHH
Q 043144 403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT--------KGLKPDTITYSSLVG 474 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~ 474 (580)
..+|...|.++.|.+.|+...... +.+...--.|...+.+.|++++|.+.+..+.. ....|+.........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999999876 34466667788889999999999999998642 123344555555667
Q ss_pred HHHhCCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 043144 475 GLSREGKVDEAIKLFHDLERLG-----VRP-----------------NVITYNSIMLGLCKARQTYRAIDILADM----- 527 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 527 (580)
.+...|+.++=..+...|.... +-| ........+.+-.+.++.....+-+..-
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 7788888877555544443211 001 1112222333333333322222221111
Q ss_pred -HHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 528 -VTRSCKPTE--ATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 528 -~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
...++..+. ..+..++.++.+.|++.+|..+...+.+....
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f 658 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF 658 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Confidence 011222221 34566778889999999999999998876543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.5e-15 Score=137.82 Aligned_cols=445 Identities=15% Similarity=0.125 Sum_probs=308.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHc-CCCCC------cchHHHHHHHH
Q 043144 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITY-NVLISGYCRLGEIDNALQVLERM-SVAPD------VVTYNTILRTL 196 (580)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~------~~~~~~l~~~~ 196 (580)
+..-|.....+.+|+..|+-+++....|+.-.. ..++..+.+..++.+|+.+|+.. ...|. ....+.++..+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 444556666788999999999887766665433 34678888899999999999876 22232 23466777788
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC------------CCHhHHHHHHH
Q 043144 197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI------------PDVVTYNVLVN 264 (580)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~l~~ 264 (580)
.+.|+++.|+..|+..++.. |+..+-..|+-++..-|+-++..+.|..+...... |+....+.-+.
T Consensus 287 iq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 99999999999999998865 88877777888888889999999999998764222 23333332221
Q ss_pred -----HHHhcC--CHHHHHHHHHHhhhCCCCCCHHH---H----------H--------HHHHHHHhcCChHHHHHHHHH
Q 043144 265 -----GICKEG--RLDEAIKFLNDMPSYGCQPNVIT---H----------N--------IILRSMCSTGRWMDAERLLAE 316 (580)
Q Consensus 265 -----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~----------~--------~ll~~~~~~~~~~~a~~~~~~ 316 (580)
-..+.+ +.++++-.--++...-+.|+... | . .-...+.+.|+++.|.++++.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 111111 22233332233332222333210 0 0 112236788999999999988
Q ss_pred HHHcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043144 317 MVLKGCSPSVVTFNILINFLCR--KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP 394 (580)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 394 (580)
+.+.+-......-+.|...+.- ..++..|.+.-+..+.... -++.....-...-..+|++++|.+.|++.+..+..
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas- 522 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS- 522 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-
Confidence 8776433333333333333332 3467777777776665421 13333333334455689999999999999875322
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG 474 (580)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 474 (580)
-...+-.+.-.+-..|++++|++.|-.+...- ..+..+...+...|.-..++..|++++.+.... ++.|+.++.-|..
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 22233444556788999999999997765422 245667777888999999999999999887654 5668889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI-AYEGLAK 553 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 553 (580)
.|-+.|+-.+|.+.+-.--+. ++-+..+..+|..-|....-+++|+.+|+++.- +.|+..-|..++..| .++|++.
T Consensus 601 lydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred Hhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999987665554 344888999999888888899999999999863 689999999887666 7899999
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHhh
Q 043144 554 EALDLLNQLCSRGVVKKSSAEQVAVK 579 (580)
Q Consensus 554 ~A~~~~~~~~~~g~~~~~~~~~~~v~ 579 (580)
.|.++++...++ ++.+-.+...+|+
T Consensus 678 ka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 678 KAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHH
Confidence 999999998665 5667777777765
No 37
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1e-14 Score=128.39 Aligned_cols=452 Identities=12% Similarity=0.085 Sum_probs=295.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
++-+..+.++..|+.+++.....+...+..+-..+..++...|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 66778889999999999988766555454555667788999999999999999998866 66677777788888889999
Q ss_pred hHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144 171 DNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK 250 (580)
Q Consensus 171 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 250 (580)
.+|..+..+. +.++..-..|...-.+.++-++-....+.+.+. ..--.+|.......-.+.+|++++..++..
T Consensus 108 ~eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998876 233344445556666778877777766555442 233455667767777899999999999876
Q ss_pred CCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144 251 GCIPDVVTYNVLV-NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF 329 (580)
Q Consensus 251 ~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 329 (580)
.|+-...|..+ -+|.+..-++-+.+++.--.+. ++.++...+..+....+.-+-..|..-.+.+...+.. .|
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~ 253 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY 253 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc
Confidence 35566666544 4667788888888888776554 2334455555554444433333344444444443211 11
Q ss_pred HHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 330 NILINFLCR-----KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 404 (580)
Q Consensus 330 ~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 404 (580)
- .+.-.++ ..+-+.|++++-.+.+. -+..-..++-.|.+.+++.+|..+.+.+.- ..|-......+..
T Consensus 254 ~-f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 P-FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred h-hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 1 1222222 23456777777666554 233445566678888999999888776532 1233333333332
Q ss_pred H-----HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 405 A-----LCKDGKVDVAVEILNQLSNKHCS-PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478 (580)
Q Consensus 405 ~-----~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 478 (580)
+ ......+.-|...|+..-+.+.. .+...-.++...+.-..++++.+..++.....-...|...+ .+..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 2 22223455666777665544422 22334556666666777888888888887765434344444 47788889
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 043144 479 EGKVDEAIKLFHDLERLGVRPNVITY-NSIMLGLCKARQTYRAIDILADMVTRSCKPTE-ATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 556 (580)
.|++.+|+++|-.+....++ |..+| ..|+.+|.+.|.++.|++++-++ +-+.+. .....++..|.+.|.+=-|.
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765556 44444 56778888999998888776444 222222 23455667788888888888
Q ss_pred HHHHHHHhCCCCC
Q 043144 557 DLLNQLCSRGVVK 569 (580)
Q Consensus 557 ~~~~~~~~~g~~~ 569 (580)
+.|+.+...++.|
T Consensus 482 KAFd~lE~lDP~p 494 (557)
T KOG3785|consen 482 KAFDELEILDPTP 494 (557)
T ss_pred HhhhHHHccCCCc
Confidence 8888887766544
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=9e-14 Score=136.38 Aligned_cols=290 Identities=11% Similarity=0.020 Sum_probs=204.9
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCHH
Q 043144 267 CKEGRLDEAIKFLNDMPSYGCQPN-VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV--VTFNILINFLCRKGLLG 343 (580)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 343 (580)
...|+++.|.+.+.+..+. .|+ ...+.....+....|+++.|.+++.++.+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 4578888888888877665 343 3344455666778889999999888887653 333 23344577788889999
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHH
Q 043144 344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL---CKDGKVDVAVEILN 420 (580)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~ 420 (580)
.|...++.+.+..+. ++..+..+...+.+.|++++|.+.+..+.+.+..+.......-..++ ...+..+.+.+.+.
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988887544 66778888888999999999999999888876542222211111111 22223333334444
Q ss_pred HHHhCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144 421 QLSNKHC---SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT---YSSLVGGLSREGKVDEAIKLFHDLER 494 (580)
Q Consensus 421 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (580)
.+.+... +.+...+..++..+...|++++|.+.+++..+.. ||... ...........++.+.+.+.+++..+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4444331 2367888888999999999999999999998863 44332 11222223445788889999988887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 495 LGVRPNV--ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 495 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..+. |+ ....++.+.|.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6443 45 667789999999999999999999533333478888888999999999999999999998754
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.9e-13 Score=120.94 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144 328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC 407 (580)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 407 (580)
|...+.+-|+-.++.++|...|++.++.++. ....|+.|..-|...++...|++.|+..++-.+. |...|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence 4444444444455555555555555544322 3334444445555555555555555555443222 4445555555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 043144 408 KDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIK 487 (580)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 487 (580)
-.+-..-|+-.|+++.... |.|...|.+|..+|.+.++.++|++.|......| ..+...+..|...|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555544433 3344445555555555555555555555544433 2233444455555555555555555
Q ss_pred HHHHH
Q 043144 488 LFHDL 492 (580)
Q Consensus 488 ~~~~~ 492 (580)
.|++.
T Consensus 488 ~yek~ 492 (559)
T KOG1155|consen 488 YYEKY 492 (559)
T ss_pred HHHHH
Confidence 54443
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.3e-13 Score=126.87 Aligned_cols=424 Identities=13% Similarity=0.058 Sum_probs=269.7
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD-IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
.+.+..+.+.++|.+++|+++|.+++.. .|+ +.-|.....+|...|++++..+--...++.. |.-+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 4455677889999999999999999986 345 5667777788899999999999888888775 44455777778888
Q ss_pred HhcCChhHHHHHHHHc----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 043144 165 CRLGEIDNALQVLERM----SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQA 240 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 240 (580)
-..|++++|+.=..-. ++ .|..+--.+=+.+-+ .|.....+-.+.+-+|...+-+ .|..|...=..+-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~-fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT-FIASYFGSFHADP- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH-HHHHHHhhccccc-
Confidence 8899998886533222 11 111111111111111 1222222222222222222211 2222211000000
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHhhhC---CCC---CC------HHHHHHHHHHHHhcCCh
Q 043144 241 MKLLDEMRNKGCIPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSY---GCQ---PN------VITHNIILRSMCSTGRW 307 (580)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---~~~---~~------~~~~~~ll~~~~~~~~~ 307 (580)
...+...+...|...-..+-..+.. ...+.+|.+.+.+-... ... .| ..+......-+.-.|+.
T Consensus 266 ---~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 266 ---KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ---cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0000000000011111111111111 11233333333321110 000 11 11122222224456888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIM 387 (580)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 387 (580)
..|..-|+..++.... +...|-.+..+|...++.++..+.|.+..+.++. ++.+|..-...+.-.+++++|..-|++.
T Consensus 343 ~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999887532 3334778888899999999999999999888655 7788888888888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----
Q 043144 388 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK---- 463 (580)
Q Consensus 388 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---- 463 (580)
++..+. +...|..+..+..+.+.++++...|++..+.. |..+.+|+....++...++++.|.+.|+..++....
T Consensus 421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 876433 45578888888889999999999999998865 556889999999999999999999999998864211
Q ss_pred -CCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 464 -PDTITY--SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 464 -p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
.+..++ -.++. +.-.+++..|..+++++.+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 499 ~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 499 IVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112111 12221 22348999999999999987766 567899999999999999999999998764
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.3e-13 Score=134.38 Aligned_cols=284 Identities=10% Similarity=0.029 Sum_probs=205.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHH
Q 043144 269 EGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFN--ILINFLCRKGLLGRA 345 (580)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 345 (580)
.|++++|.+.+....+.. +++. .+.....+....|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887777655432 1222 2333344457788888888888888765 34433222 336677888888888
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHH
Q 043144 346 IDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-------TYNTLLTALCKDGKVDVAVEI 418 (580)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~ 418 (580)
...++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++.. ++..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888877544 67777888888888888888888888888765542221 223334334444555666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
++.+.+.. +.++.....+...+...|+.++|.+.+++..+. .||.... ++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66664432 456778888889999999999999999988874 4555332 233444568999999999998876554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777888999999999999999999999865 788888889999999999999999999987653
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.2e-12 Score=117.02 Aligned_cols=368 Identities=11% Similarity=0.050 Sum_probs=272.6
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HhH
Q 043144 181 SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD--VVT 258 (580)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 258 (580)
+...|...+...+..+.+.|....|+..|...+..- +..|.+.+....-.-+.+.+..+...+ +.| ...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGL-----PSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHH
Confidence 345677777777888888999999999998887642 334554444433333333333222111 212 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHH
Q 043144 259 YNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC--SPSVVTFNILINFL 336 (580)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 336 (580)
--.+..++-.....++++.-.......|++.+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 2234556667778899999999988888777776666666677889999999999999998731 12556777665433
Q ss_pred HhcCCHH-HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043144 337 CRKGLLG-RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVA 415 (580)
Q Consensus 337 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 415 (580)
.....+. -|..++ .+-+ --+.|...+.+-|.-.++.++|...|++.++.++. ....|+.+.+-|....+...|
T Consensus 310 ~~~skLs~LA~~v~-~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVS-NIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhhHHHHHHHHHHH-Hhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 2222221 122222 2222 24567888889999999999999999999987443 456899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144 416 VEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL 495 (580)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (580)
.+-++.+.+.+ +.|-..|-.+.++|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|..+...
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999876 5678899999999999999999999999998763 557889999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 496 GVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR----SC-KP-TEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 496 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
+-. +...+..|+..|-+.++.++|...+++.++. |. .| ......-|..-+.+.+++++|..+......-+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 633 6788999999999999999999999887753 22 22 23334447777889999999988877776554
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=9.4e-17 Score=149.66 Aligned_cols=262 Identities=16% Similarity=0.155 Sum_probs=109.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043144 296 IILRSMCSTGRWMDAERLLAEMVLKG-CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE 374 (580)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (580)
.+...+...|++++|.++++...... .+.+...|..+.......++.+.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666778888888888886554433 2345566666777777788888999988888876544 55566667766 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144 375 KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH-CSPVLITYNTVIDGLSKVGKTEQAMKL 453 (580)
Q Consensus 375 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 453 (580)
+++++|.++++...+. .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8889998888776654 3456667778888889999999999998877543 346677888888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043144 454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK 533 (580)
Q Consensus 454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 533 (580)
+++.++.. +.|......++..+...|+.+++..++....+.. +.|+..+..++.+|...|++++|+..+++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99998763 3357778888999999999999888888877543 2355677888999999999999999999988763 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 534 PTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.|+.....++.++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 7888889999999999999999999888764
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.9e-13 Score=125.66 Aligned_cols=411 Identities=14% Similarity=0.103 Sum_probs=263.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCC
Q 043144 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPD-VITYNVLISGYCRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGK 201 (580)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~ 201 (580)
..+-|.+.|.+++|++.|...+.. .|+ +.-|.....+|...|++++..+.-.+. .+.|+ +.++..-..++-+.|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 345578899999999999998876 455 777888889999999999988877666 55666 4467777788888888
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH--------HHHHH-cC--CCCCHhHHHHHHHHHHhcC
Q 043144 202 LNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL--------DEMRN-KG--CIPDVVTYNVLVNGICKEG 270 (580)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~-~~--~~~~~~~~~~l~~~~~~~g 270 (580)
+++|+.-..- .++...+....-.--+.+++ .+-.+ .+ .-|+.....+....+...
T Consensus 199 ~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~- 264 (606)
T KOG0547|consen 199 FDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD- 264 (606)
T ss_pred HHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-
Confidence 8887643222 12222221111111122222 22222 11 123333333333222110
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcC---C---CCC------hhhHHHHHHHHH
Q 043144 271 RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS-TGRWMDAERLLAEMVLKG---C---SPS------VVTFNILINFLC 337 (580)
Q Consensus 271 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~---~---~~~------~~~~~~l~~~~~ 337 (580)
+. ..+...+-..|...-..+=..+.. ...+..|...+.+-.... . ..| ..+.......+.
T Consensus 265 -~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 265 -PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred -cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00 000000000011000000000100 012333333332221110 0 011 112222223345
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144 338 RKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 417 (580)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 417 (580)
-.|+.-.|..-|+..+..... +...|--+...|....+.++-...|....+.++. ++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 578999999999999987544 3333778888999999999999999999887554 55677777888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144 418 ILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV 497 (580)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 497 (580)
-|+.....+ +.+...|--+.-+..+.++++++...|++.+++ ++--++.|+.....+...++++.|.+.|+..++..+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999999876 334556666666667899999999999999886 566788999999999999999999999999987654
Q ss_pred CC-----CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 498 RP-----NVI--TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 498 ~~-----~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.. +.. +-.+++.. .-.+++.+|.+++.++.+.. +.....+..|+..-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 31 121 12223322 23489999999999999763 55577899999999999999999999998754
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.8e-16 Score=147.81 Aligned_cols=258 Identities=17% Similarity=0.107 Sum_probs=63.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 89 NHLRRLVRNGELEEGFKFLESMVYHG-DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL 167 (580)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (580)
.+...+.+.|++++|++++....... .+.+...|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555566666666666665444332 23344445555555556666666666666665544 2244445555554 455
Q ss_pred CChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144 168 GEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE-CYPDVITYTILIEATCKESGVGQAMKLLD 245 (580)
Q Consensus 168 g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (580)
+++++|.+++++. ...++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666655544 223444445555555555555555555555544321 12334444445555555555555555555
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144 246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS 325 (580)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (580)
+.++..+. |....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|..+|+...+.. +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 55544211 34444455555555555555444444443322 2233334444445555555555555555544432 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 326 VVTFNILINFLCRKGLLGRAIDILEK 351 (580)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (580)
+.....+++++...|+.++|.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444445555555555555544443
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.4e-12 Score=119.90 Aligned_cols=448 Identities=13% Similarity=0.056 Sum_probs=310.7
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
-+..+.+-+..+.++.-|+-+.+++...+ .|+.....++.++.-.|++..|..+...-.-. ..|..+......++.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 45566777778888989988888887654 45555566788888889998888877654322 467788888888899
Q ss_pred hcCChhHHHHHHHH----c-CC---CCC--------cch-----------HHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043144 166 RLGEIDNALQVLER----M-SV---APD--------VVT-----------YNTILRTLCDSGKLNLAMEVLHKQLEKECY 218 (580)
Q Consensus 166 ~~g~~~~A~~~~~~----~-~~---~~~--------~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (580)
+..++++|..++.. . ++ +.| ..- +..-...|....+.++|...|.+++...+.
T Consensus 94 ~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~ 173 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK 173 (611)
T ss_pred HHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh
Confidence 99999999999882 2 11 111 100 111123455566778888888877765322
Q ss_pred CChhhHHHHHHHHHh-----------------c-CCHhHHHHHHHHHHHc----------------CCCCCHhHHHHHHH
Q 043144 219 PDVITYTILIEATCK-----------------E-SGVGQAMKLLDEMRNK----------------GCIPDVVTYNVLVN 264 (580)
Q Consensus 219 ~~~~~~~~li~~~~~-----------------~-g~~~~A~~~~~~~~~~----------------~~~~~~~~~~~l~~ 264 (580)
....+-.++....- . .+.+.-+.+|+..... +...++.......+
T Consensus 174 -c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 174 -CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred -hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 11122222221110 0 1111122222211000 12224445555667
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 043144 265 GICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGR 344 (580)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 344 (580)
.+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+-.++.+. .|..+.+|-++.-.|...|..++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 7778899999999999987765 666667777777888888888777777777765 46677889999999988999999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 345 AIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN 424 (580)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (580)
|++.|.+....+.. -...|-.+...|.-.|..|+|+..|...-+.- .-...-+.-+.--|.+.++++.|..+|.++..
T Consensus 331 ARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 331 ARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999987765332 34568888899999999999999988876631 11122233344467888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 425 KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK--GL---KP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
.. |.|+...+.+.-.....+.+.+|..+|+..+.. .+ .+ -..+++.|.++|.+.+.+++|+..+++.....++
T Consensus 409 i~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 IA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred cC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 65 556777888877777888999999999887621 01 11 2346888999999999999999999999887665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI 546 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+..++.+++..|...|+++.|++.|.+.+. +.|+..+-..++..+
T Consensus 488 -~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 488 -DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred -chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 888999999999999999999999999884 477776655555544
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.4e-13 Score=133.45 Aligned_cols=290 Identities=15% Similarity=0.045 Sum_probs=197.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcc--hHHHHHHHHHhcCChhHH
Q 043144 129 FCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVV--TYNTILRTLCDSGKLNLA 205 (580)
Q Consensus 129 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~~~~A 205 (580)
....|+++.|.+.+.+..+.. +.....+.....++.+.|+++.|.+.+.+. ...|+.. ........+...|+++.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 357888888988888877654 222334445567777888888988888886 3335543 333457788888899999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 043144 206 MEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYN-VLVN---GICKEGRLDEAIKFLND 281 (580)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~ 281 (580)
.+.++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888875 335667778888888899999999988888887643 333221 1111 11222333333334433
Q ss_pred hhhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 282 MPSYG---CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVT---FNILINFLCRKGLLGRAIDILEKMPKH 355 (580)
Q Consensus 282 ~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (580)
+.+.. .+.+...+..+...+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 33321 12377788888888899999999999999888863 33321 111222223457788888888887776
Q ss_pred CCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 356 GCTPNS--LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN 424 (580)
Q Consensus 356 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (580)
.+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 45 566788888899999999999999533333467888888899999999999999999988643
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.1e-14 Score=135.34 Aligned_cols=291 Identities=12% Similarity=0.042 Sum_probs=212.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043144 271 RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDI 348 (580)
Q Consensus 271 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 348 (580)
+..+|+..|.++... +.-.......+..+|...+++++|.++|+.+.+.. ...+...|.+.+--+-+ .-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 457788888885543 22333556677788888888888888888887652 11244566655543321 1111112
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144 349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS 428 (580)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (580)
-+.+.... +..+.+|.++.++|.-+++.+.|++.|++.++.++. ..++|+.+..-+.....+|.|...|+.....+ +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 22333332 237788999999999999999999999998875322 56788888888888899999999998888644 2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
.+...|..+...|.+.++++.|.-.|+++.+.+ +-+.+....+...+-+.|+.++|+++++++...++. |+..-...+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 223445556777889999999999999998765 335667777888888999999999999999887766 544444556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
..+...+++++|+..++++.+. ++.+...+..++..|.+.|+.+.|..-|.-+.+..++...
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6777889999999999998875 4555677888899999999999999999888887766654
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=3.9e-13 Score=131.14 Aligned_cols=280 Identities=13% Similarity=0.050 Sum_probs=131.7
Q ss_pred cCChhHHHHHHHHcCC-CCCcchHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHhHHHH
Q 043144 167 LGEIDNALQVLERMSV-APDVVTYNTI-LRTLCDSGKLNLAMEVLHKQLEKECYPDVITY--TILIEATCKESGVGQAMK 242 (580)
Q Consensus 167 ~g~~~~A~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~ 242 (580)
.|++++|.+.+.+... .+++..+..+ ..+..+.|+++.|...+.++.+.. |+.... ......+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666666666665521 1122222222 333356666666666666665543 332211 123455666666666666
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHH
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVI-------THNIILRSMCSTGRWMDAERLLA 315 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~ 315 (580)
.++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666665422 45566666666666777777776666666554322111 11111222222222233333333
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144 316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 395 (580)
.+.+. .+.++.....+...+...|+.++|.+++++..+. ++++.. .++.+....++.++++...+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 33221 1224444444555555555555555555554442 222211 1122222334555555555554444221 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEM 457 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (580)
...+..+...+.+.+++++|.+.|+.+.+.. |+...+..+...+.+.|+.++|.+++++-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555555555555555555554433 44444445555555555555555555443
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.1e-12 Score=114.51 Aligned_cols=293 Identities=19% Similarity=0.187 Sum_probs=196.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCH
Q 043144 269 EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV------VTFNILINFLCRKGLL 342 (580)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 342 (580)
.++.++|.++|-+|.+.+ +.+..+..++.+.|.+.|..+.|+++...+.+. ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456678888888777643 334455566777777888888888888777764 232 2344566677788888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHH
Q 043144 343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV----TYNTLLTALCKDGKVDVAVEI 418 (580)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~ 418 (580)
|.|+.+|..+.+.+.. -......|+..|-..++|++|+++-+++.+.+..+... .|.-+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888877764322 44566777888888888888888888877765544332 455566666667788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
+.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+....
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 88887765 22233334556677788888888888888887754444567777888888888888888888888765433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCch
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA---YEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
++ .-..+...-....-.+.|...+.+-+.+ .|+...+..++..-. ..|...+-...++.|....+...+
T Consensus 282 ~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 282 AD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred cc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 33 3334444334444556666666666654 678887877777653 345566777777777665544433
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3e-12 Score=111.95 Aligned_cols=285 Identities=16% Similarity=0.143 Sum_probs=181.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhcCCH
Q 043144 199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD------VVTYNVLVNGICKEGRL 272 (580)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 272 (580)
..+.++|.+.|-+|.+.. +.+..+-.+|.+.|.+.|..|.|+++.+.+.+. || ......|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456667777777766643 224445556677777777777777777777654 33 22344566777778888
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHH
Q 043144 273 DEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV----VTFNILINFLCRKGLLGRAIDI 348 (580)
Q Consensus 273 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 348 (580)
|.|..+|..+.+.+ ..-......++..|-...+|++|+..-+++.+.+-.+.. ..|..|...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888877644 334455667777788888888888887777766433221 2445556666667778888888
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144 349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS 428 (580)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (580)
+.+..+.+.. .+..--.+.......|+++.|.+.++.+.+.++.--..+...|..+|.+.|+.++...++..+.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8887776333 334444556777788888888888888877644333446777778888888888888888777766533
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS---REGKVDEAIKLFHDLE 493 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~ 493 (580)
+ ..-..+.+.-....-.+.|...+.+-+.. +|+...+..++..-. ..|...+.+..++.|.
T Consensus 282 ~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 282 A--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred c--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3 33333333333344445555555554443 577777777776553 3344556666666664
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.1e-13 Score=130.52 Aligned_cols=284 Identities=12% Similarity=0.045 Sum_probs=223.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144 235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG--CQPNVITHNIILRSMCSTGRWMDAER 312 (580)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~ 312 (580)
-+..+|...|..+..+- .-...+...+..+|...+++++|..+|+.+.+.. ...+...|.+.+..+- +. -++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~-v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DE-VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hh-HHHH
Confidence 45678999999866552 2234566778899999999999999999988642 1235566777665442 11 2222
Q ss_pred H-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043144 313 L-LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG 391 (580)
Q Consensus 313 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 391 (580)
. -+.+... -+..+.+|.++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 2 2333333 2557789999999999999999999999999987433 6788998988899999999999999998764
Q ss_pred CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144 392 CYPDIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYS 470 (580)
Q Consensus 392 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 470 (580)
.|..+ .|..+...|.+.++++.|.-.|+.+.+.+ +.+.+....+...+.+.|+.++|+++++++...+. -|+..--
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHH
Confidence 44444 88889999999999999999999999877 44566667778888899999999999999987653 3555555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 471 SLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..+..+...+++++|+..++++.+.-++ +...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5677888899999999999999986544 6778889999999999999999999888765
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=3.5e-10 Score=107.98 Aligned_cols=469 Identities=11% Similarity=0.040 Sum_probs=272.5
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYH-GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
..|...+..+..+|+...-...|+.++.. .+.-...+|...+......|-++-+..++++.++.. +..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 57888999999999999999999999876 333456789999998899999999999999988753 4446677888
Q ss_pred HHhcCChhHHHHHHHHc---------CCCCCcchHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043144 164 YCRLGEIDNALQVLERM---------SVAPDVVTYNTILRTLCDSGKLNL---AMEVLHKQLEKECYPDVITYTILIEAT 231 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~ 231 (580)
++..++.++|-+.+... ..+.+...|..+-...++.-+.-. ...+++.+...-...-...|++|++.|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 89999999999998887 123344567776666666543332 333444444332111245789999999
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----------------------CHHHHHHHHHHhhhCC---
Q 043144 232 CKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG----------------------RLDEAIKFLNDMPSYG--- 286 (580)
Q Consensus 232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~--- 286 (580)
.+.|.+++|.++|++.... ...+.-|..+.+.|..-. +++-.+..|+.+....
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999998765 223444444444444211 1122222333322110
Q ss_pred --------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 287 --------CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP------SVVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 287 --------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
-+.++..|..-+.. ..|+..+-...|.++... +.| -...|..+.+.|-..|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 02233344333322 245555666666666653 122 1235777777888888888888888877
Q ss_pred hhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHHhcCCh
Q 043144 353 PKHGCTPN---SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP-----------------DIVTYNTLLTALCKDGKV 412 (580)
Q Consensus 353 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g~~ 412 (580)
.+-..+-- ..+|......=.++.+++.|+.+.+......-.| +...|...++..-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76533311 2345555555566777777877777665431111 112344444445555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---CCCHHHHHHH
Q 043144 413 DVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSR---EGKVDEAIKL 488 (580)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~ 488 (580)
+....+++.+....+.. +..--.....+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++.|..+
T Consensus 494 estk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666666666654321 111111222233455566676666665444223443 345555544432 2246677777
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 489 FHDLERLGVRPNVI--TYNSIMLGLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 489 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|+++.+.- +|... .|......--..|-...|+.+++++... +++. ...|+..+.-....=-...-+.+++++++
T Consensus 573 FEqaL~~C-pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALDGC-PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 77776632 23322 1222222223456666677777765543 2332 22444444433333334455666666666
Q ss_pred C
Q 043144 565 R 565 (580)
Q Consensus 565 ~ 565 (580)
.
T Consensus 651 ~ 651 (835)
T KOG2047|consen 651 S 651 (835)
T ss_pred h
Confidence 5
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.1e-11 Score=111.83 Aligned_cols=287 Identities=14% Similarity=0.118 Sum_probs=183.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043144 269 EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDI 348 (580)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 348 (580)
.|++.+|.....+-.+.+ ......|..-..+.-..|+.+.+-.++.++.+..-.++........+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 566777776666655544 2233344444555566677777777776666552234444555556666667777777766
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 043144 349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-------VTYNTLLTALCKDGKVDVAVEILNQ 421 (580)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 421 (580)
+.++.+.++. ++........+|.+.|++.....+...+.+.+.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665443 5566666667777777777777777777666654333 2455566555555555555555655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 043144 422 LSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV 501 (580)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 501 (580)
....- ..++..-.+++.-+.+.|+.++|.++..+..+++..|. -...-.+.+-++.+.-++..++..+..+. ++
T Consensus 255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 54322 23344555667777778888888888877777655444 12223455667777666666666544332 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
..+.+|...|.+.+.|.+|.+.|+..++. .|+..+|..+++++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67777888888888888888888877754 678888888888888888888888887776633
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=1.6e-09 Score=103.59 Aligned_cols=319 Identities=14% Similarity=0.100 Sum_probs=193.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhc
Q 043144 234 ESGVGQAMKLLDEMRNKGCIPD------VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN---VITHNIILRSMCST 304 (580)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 304 (580)
.|+..+-...|.++... +.|. -..|..+...|-..|+++.|..+|++..+-..+.- ..+|......-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 35566666666666543 1221 23577788888888888888888888776432221 23455555555567
Q ss_pred CChHHHHHHHHHHHHcC-----------CCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043144 305 GRWMDAERLLAEMVLKG-----------CSP------SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPV 367 (580)
Q Consensus 305 ~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 367 (580)
.+++.|+++.+.+.... .++ +...|...++.--..|-++....+++++++..+. ++...-..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 77888888777765321 111 2334555666666678888888888888877554 33322222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 043144 368 LHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTALCK---DGKVDVAVEILNQLSNKHCSPVLIT--YNTVIDGL 441 (580)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~ 441 (580)
.-.+-.+.-++++.++|++-+..-..|... .|+..+.-+.+ ...++.|..+|++..+ +++|...- |......-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 233344555788888888766554445554 66666555443 2367889999998888 54544322 22222333
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVI---TYNSIMLGLCKARQ 516 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 516 (580)
.+.|....|+.++++.... +++. ...|+.+|.--...=-+.....+|+++++.- |+.. ........-++.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--p~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--PDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--ChHHHHHHHHHHHHHhhhhhh
Confidence 3568888888888886653 3333 2457766654444434555677777777642 3332 22334455667899
Q ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 517 TYRAIDILADMVTRSCKP--TEATYTILIEGIAYEGLAKEALDLL 559 (580)
Q Consensus 517 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
.++|+.++.-..+-. +| +...|...=..=.++|+-+...+.+
T Consensus 674 idRARaIya~~sq~~-dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 674 IDRARAIYAHGSQIC-DPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhhhhcC-CCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999887766542 33 4567777777678888855444443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-10 Score=109.56 Aligned_cols=433 Identities=13% Similarity=0.019 Sum_probs=304.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhc
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDS 199 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~ 199 (580)
-+..+++-+..+.++..|.-+-+++...+ .|+...--+++++.-.|+++.|..+...- -...|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 34455555667777888888888887765 44444455788888899999999888765 2346778888889999999
Q ss_pred CChhHHHHHHHHHHhC-------------CCCCChhh-----------HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 043144 200 GKLNLAMEVLHKQLEK-------------ECYPDVIT-----------YTILIEATCKESGVGQAMKLLDEMRNKGCIPD 255 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~-------------~~~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 255 (580)
.+++.|..++...... -+.+|..- +..-...|....+.++|...|.+.... |
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D 171 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----D 171 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----c
Confidence 9999999988722100 01111111 011112244556778888888877654 3
Q ss_pred HhHHHH---HHHHHHh-----------------cCCHHHH-HHHHHH----hhh------------CCCCCCHHHHHHHH
Q 043144 256 VVTYNV---LVNGICK-----------------EGRLDEA-IKFLND----MPS------------YGCQPNVITHNIIL 298 (580)
Q Consensus 256 ~~~~~~---l~~~~~~-----------------~g~~~~A-~~~~~~----~~~------------~~~~~~~~~~~~ll 298 (580)
+..+.. ++....- .+...+- ..+|+- +.. .+...+........
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 333332 2221110 1111111 112221 000 11233444455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043144 299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMD 378 (580)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (580)
.-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +..+.+|-++.--|...|..+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 66778899999999999999874 5566666666778888888877777766777653 337789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144 379 RAIEYLEIMVSRGCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEM 457 (580)
Q Consensus 379 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (580)
+|.+.|.+.... .|. ...|..+...|+-.|..++|...+..+.+.-..- ..-+..+.--|.+.++.+.|.++|.+.
T Consensus 330 eARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 330 EARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999988754 333 3489999999999999999999988876543111 111333555678899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 458 RTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL----GVR-P-NVITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 458 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
.... +-|+..++-+.-.....+.+.+|..+|+..... +.+ + -..+++.|+.+|.+.+.+++|+..+++.+...
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 8764 457778888887778889999999999988621 111 1 24568899999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 532 CKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 532 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
+.+..++..++-+|...|+++.|.+.|.+.....
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999988754
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=4.6e-11 Score=107.99 Aligned_cols=287 Identities=16% Similarity=0.163 Sum_probs=203.2
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144 234 ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERL 313 (580)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 313 (580)
.|++.+|+++..+..+.+.. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++.....+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57888888888777666533 24445555566667788888888888777653245555666666777778888888887
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 314 LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS-------LSYNPVLHGFCKEKKMDRAIEYLEI 386 (580)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 386 (580)
..++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777765 446667777788888888888888888888777655443 2455556555555556665666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 043144 387 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT 466 (580)
Q Consensus 387 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 466 (580)
.... .+.++..-..++.-+.++|+.++|.++..+..+....|.. ...-.+.+-++.+.-.+..++-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 3446667777788888888888888888888877755541 12223456677777777777666542 3455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77888888888888888888888877664 578888888888888888888888888887643
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.55 E-value=1.8e-10 Score=112.50 Aligned_cols=430 Identities=13% Similarity=0.050 Sum_probs=237.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCC--C-CcchHHH
Q 043144 116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVA--P-DVVTYNT 191 (580)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~-~~~~~~~ 191 (580)
..|..+|..+.-++...|++..+.+.|++....- .-....|..+...|...|.-..|..+.+.. +.. | |...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3455666666666666666666666666665432 334455666666666666666666666654 222 2 2333333
Q ss_pred HHHHHH-hcCChhHHHHHHHHHHhC--CCC--CChhhHHHHHHHHHh-----------cCCHhHHHHHHHHHHHcCCCCC
Q 043144 192 ILRTLC-DSGKLNLAMEVLHKQLEK--ECY--PDVITYTILIEATCK-----------ESGVGQAMKLLDEMRNKGCIPD 255 (580)
Q Consensus 192 l~~~~~-~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~~~~~~~ 255 (580)
....|. +.+.+++++.+-.+++.. +.. .....+..+.-+|.. .....++.+.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 333333 345556666655555541 100 112223333322221 11223455555555554322 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043144 256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF 335 (580)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (580)
+.+..-+.--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...+.- +.|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 222222333445566666666666666655434556666666666666666666666666555431 1111111112222
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC---
Q 043144 336 LCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR--GCYPDIVTYNTLLTALCKDG--- 410 (580)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g--- 410 (580)
-...++.+++...+..++.. |... ....+.++-....+....+.-. ...-...++..+.......+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 22345555555555444331 0000 0000111111112221111100 01111122222222221111
Q ss_pred ChHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144 411 KVDVAVEILNQLSNKHCS--PV------LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV 482 (580)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 482 (580)
..+.. +...... |+ ...|......+.+.++.++|..++.+..... +-....|......+...|..
T Consensus 628 ~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 628 GSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 11111 1111111 22 2346667778889999999999999887653 44566677777788899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAID--ILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
++|.+.|..+...++. ++....+++.++...|+..-|.. ++.++++.+ +.+...|..++..+.+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999999887655 67788999999999998877777 999999875 7789999999999999999999999999
Q ss_pred HHHhCC
Q 043144 561 QLCSRG 566 (580)
Q Consensus 561 ~~~~~g 566 (580)
...+.-
T Consensus 779 aa~qLe 784 (799)
T KOG4162|consen 779 AALQLE 784 (799)
T ss_pred HHHhhc
Confidence 987653
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=1.1e-09 Score=105.04 Aligned_cols=460 Identities=13% Similarity=0.138 Sum_probs=301.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
|..++. +...+++...++..+.++.. .+....+.....-.+...|+.++|....+.....+ ..+.++|..++-.+..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 333343 34567999999999999884 56666666666666788999999999998888766 6678899999999988
Q ss_pred cCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 167 LGEIDNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
..++++|+..|..+ .+.| |...|.-+.-.-++.++++.....-...++.. +.....|..++.++.-.|++..|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 4444 56678888777888899998888887777754 335667888888888999999999999
Q ss_pred HHHHHcC-CCCCHhHHHHHH------HHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 043144 245 DEMRNKG-CIPDVVTYNVLV------NGICKEGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAE 316 (580)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 316 (580)
++..+.. ..|+...+.... ....+.|..++|++.+..-... ..|-. .-..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 9987653 245555554322 3456788888888887765432 12222 223445567889999999999999
Q ss_pred HHHcCCCCChhhHHHHHH-HHHh-cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCC
Q 043144 317 MVLKGCSPSVVTFNILIN-FLCR-KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK-MDRAIEYLEIMVSRGCY 393 (580)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~-~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~ 393 (580)
++.. .||...|...+. ++.+ .+..+....+|....+. .|-...-..+--....... .+..-.++....+.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9987 466666555444 4433 33333333666655443 1111111111111111122 33344555666666654
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHH----HHHHHHhCC----------CCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHH
Q 043144 394 PDIVTYNTLLTALCKDGKVDVAVE----ILNQLSNKH----------CSPVLITY--NTVIDGLSKVGKTEQAMKLLEEM 457 (580)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 457 (580)
+ ++..+...|-.....+-..+ +...+...+ -+|....| ..++..+-+.|+++.|...++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 23333333332221111111 111111111 14555444 44677788999999999999998
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---
Q 043144 458 RTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK--- 533 (580)
Q Consensus 458 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 533 (580)
+.+ .|+ .+.|..=.+.+...|++++|...+++..+.+. +|...-.--+.-..++.+.++|.++.....+.|..
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 875 444 34565666788999999999999999987753 35544435556667889999999998888776531
Q ss_pred ---CCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 043144 534 ---PTEATYTIL--IEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 534 ---~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 562 (580)
.-.-.|..+ +.+|.+.|++..|.+=+..+
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 012234443 56788888888887655544
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=2.1e-09 Score=103.16 Aligned_cols=429 Identities=13% Similarity=0.117 Sum_probs=292.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC 197 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 197 (580)
..|...+. +...+++...+...+.+.+. .+....+....+-.+...|+-++|....... +...+.+.|..++-.+-
T Consensus 9 ~lF~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34444454 45667888999999988884 3666677776777777899999999988776 44566789999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144 198 DSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK 277 (580)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (580)
...++++|++.|+.++..+ +.|...|..+.-.-.+.|+++.....-....+.. +.....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 3467788888888888899998888888777653 2256678888888899999999999
Q ss_pred HHHHhhhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043144 278 FLNDMPSYG-CQPNVITHNIIL------RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILE 350 (580)
Q Consensus 278 ~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (580)
++++..+.. -.|+...+.... ......|..++|.+.+...... +......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999987654 245655554332 2345678888888776655432 11122233445677889999999999999
Q ss_pred HhhhCCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCC
Q 043144 351 KMPKHGCTPNSLSYNPVL-HGFCKEKKMDRAI-EYLEIMVSRGCYPDIVTYNTLLTALCKDGK-VDVAVEILNQLSNKHC 427 (580)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~ 427 (580)
.++.. .||...|.... .++.+-.+.-++. .+|....+. .|.......+--......+ .+..-.++....+.|+
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 99987 45666665555 4443344444444 677766553 2222211111111112222 2334455566666665
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----H----CC----------CCCCHHHH--HHHHHHHHhCCCHHHHHH
Q 043144 428 SPVLITYNTVIDGLSKVGKTEQAMKLLEEMR----T----KG----------LKPDTITY--SSLVGGLSREGKVDEAIK 487 (580)
Q Consensus 428 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~ 487 (580)
++ ++..+...|-.-...+ ++++.. . .| -+|....| -.++..+-..|+++.|..
T Consensus 320 p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred Cc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44 2333444333222111 222221 1 11 14555444 467788899999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 488 LFHDLERLGVRPN-VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 488 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
+++.+++.- |+ +..|..-++.+...|++++|..++++..+.. .+|...-..-+.-..+.++.++|.++.....+.|
T Consensus 393 yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 393 YIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999998753 44 4566666788999999999999999998764 5555544466666789999999999999999988
Q ss_pred C
Q 043144 567 V 567 (580)
Q Consensus 567 ~ 567 (580)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 6
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=5.4e-10 Score=99.15 Aligned_cols=418 Identities=14% Similarity=0.125 Sum_probs=249.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
+...+.+.|++++|+..+..+.+. ..++...+..++-++.-.|.+.+|..+-... +.++.....|....-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCc
Confidence 345677899999999999998875 5567778888888889999999999887654 3344445556677777888
Q ss_pred hhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCCHhHHHHHHHHHH
Q 043144 170 IDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTI-LIEATCKESGVGQAMKLLDEMR 248 (580)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~ 248 (580)
-++-..+-+.++ ....---+|.......-.+.+|+++|.+.+..+ |+-...+. +.-+|.+..-++-+.++++-.+
T Consensus 137 Ek~~~~fh~~Lq--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 137 EKRILTFHSSLQ--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHHh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 777777777663 222344556666666677999999999998865 55555554 3445778888888999988877
Q ss_pred HcCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcC
Q 043144 249 NKGCIPDVVTYNVLVNGICK--EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST-----GRWMDAERLLAEMVLKG 321 (580)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~ 321 (580)
+. ++.+....|..+....+ .|+. |.+-..++.+.+-.. | ..+.-.++. .+-+.|++++-.+.+.
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~- 283 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH- 283 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh-
Confidence 66 23345566655544443 3433 222233333221111 0 111122222 3345566666555443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCC
Q 043144 322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-------KMDRAIEYLEIMVSRGCYP 394 (580)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~ 394 (580)
-| ..-..|+-.|.+.+++.+|..+.+++... ++.-|-.-.-.++..| ...-|.+.|+.+-+.+..-
T Consensus 284 -IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 284 -IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred -Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 12 23334555677788888888777665432 2222222222223332 2344555555544444333
Q ss_pred CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 043144 395 DIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITY-SSL 472 (580)
Q Consensus 395 ~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l 472 (580)
|.. .-.++...+.-..++++.+..+..+.......|...+| +.++++..|++.+|.++|-......++ |..+| ..|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 322 34445555555667777777777777655444444443 567777788888888887665533333 34444 445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043144 473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY 539 (580)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 539 (580)
..+|.+++..+.|+.++-++... .........++.-|.+.+++--|.+.|+.+... .|++.-|
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 56777888888777776554321 112223344456677777777777777666543 4555444
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=1.4e-11 Score=125.78 Aligned_cols=266 Identities=10% Similarity=0.044 Sum_probs=186.3
Q ss_pred CCChhhHHHHHHHH--H---hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHc-
Q 043144 116 IPDIIPCTSLIRGF--C---KVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR---------LGEIDNALQVLERM- 180 (580)
Q Consensus 116 ~~~~~~~~~l~~~~--~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~- 180 (580)
+.+...|...+.+- . ..+++++|..+|++..+.. |.+...|..+..+|.. .+++++|...++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 34444444444442 1 2356889999999999876 5566677777766542 24478999999988
Q ss_pred CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHH
Q 043144 181 SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY 259 (580)
Q Consensus 181 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 259 (580)
.. |.+..++..++..+...|++++|...|+++++.+ +.+...+..+...+...|++++|...++.+.+..+. +...+
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 33 4467788888899999999999999999999876 335667888888999999999999999999887533 23333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043144 260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRK 339 (580)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 339 (580)
..++..+...|++++|+..++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 44455566789999999999998765322245557777888889999999999998876552 23344556666677777
Q ss_pred CCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144 340 GLLGRAIDILEKMPKHG-CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390 (580)
Q Consensus 340 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 390 (580)
| +.+...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7 47777777766531 11122222 44455566777777766 777665
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=5.4e-11 Score=121.42 Aligned_cols=268 Identities=15% Similarity=0.068 Sum_probs=189.8
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHhhh
Q 043144 289 PNVITHNIILRSMCS-----TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR---------KGLLGRAIDILEKMPK 354 (580)
Q Consensus 289 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 354 (580)
.+...|...+.+... .+.+++|..+|++.++.. +.+...+..+..++.. .+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344555555554321 234678999999998774 3345566666655542 2457899999999998
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 043144 355 HGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITY 434 (580)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 434 (580)
.++. +...+..+...+...|++++|...|++.++.++. +...+..+..++...|++++|...++++.+.+.. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7554 7778888888899999999999999999987433 4557888889999999999999999999987732 22333
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA 514 (580)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 514 (580)
..++..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++....+. +....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhcc
Confidence 3445556678999999999999876532224556777888889999999999999987654322 444556666677776
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 515 RQTYRAIDILADMVTRS-CKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 515 g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
| ++|...++.+.+.. -.+....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6 58888888876541 11222222 45566777888887777 8887765
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=1.6e-09 Score=106.68 Aligned_cols=292 Identities=14% Similarity=0.143 Sum_probs=199.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL--- 167 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 167 (580)
...+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45678889999999999886554 33344566788899999999999999999999987 55565666666665322
Q ss_pred --CChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144 168 --GEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKL-NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL 243 (580)
Q Consensus 168 --g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 243 (580)
.+.+...++|+++ ..-|...+...+.-.+..-..+ ..+..++..++..|+|+ +|..+-..|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2467778888887 2224333333333222222223 23555666777777653 456666666655555555566
Q ss_pred HHHHHHc----C----------CCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 244 LDEMRNK----G----------CIPDVV--TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW 307 (580)
Q Consensus 244 ~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (580)
+...... + -+|+.. ++..+...|-..|++++|++++++..+.. +..+..|..-.+.+-..|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 6555432 1 123332 44566788888999999999999888773 33367777888888999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhh------H--HHHHHHHHhcCCHHH
Q 043144 308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLS------Y--NPVLHGFCKEKKMDR 379 (580)
Q Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~~~~~~ 379 (580)
.+|.+.++.+...+ ..|...-+..+..+.+.|++++|.+++....+.+..|.... | .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999988775 34666667777888899999999999888877654332211 1 334577888888888
Q ss_pred HHHHHHHHHH
Q 043144 380 AIEYLEIMVS 389 (580)
Q Consensus 380 A~~~~~~~~~ 389 (580)
|+..|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=5.4e-11 Score=108.23 Aligned_cols=201 Identities=16% Similarity=0.049 Sum_probs=144.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDG 440 (580)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 440 (580)
...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 44556666677777777777777777665432 234566667777777777777777777776654 2345566667777
Q ss_pred HHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 441 LSKVGKTEQAMKLLEEMRTKGL-KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 519 (580)
+...|++++|...+++...... ......+..+...+...|++++|...+.+..+..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7778888888888887775421 123445666777888888888888888888775433 56677788888888889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 520 AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 98888888776 3556777777888888888888888888877654
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2e-09 Score=102.12 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC-- 165 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 165 (580)
.+=++.+..+|++++|.+...+++.-+ |.+...+..-+.++.+.+.|++|+.+.+.-.... ..+... +=.+||
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Y 90 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEY 90 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHH
Confidence 344677888999999999999998874 6677888888889999999999996654322110 111111 234444
Q ss_pred hcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 166 RLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
+.+..++|+..++... +.|..+...-.+.+.+.|++++|+.+|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 6899999999999542 2344477777889999999999999999997765
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=3.1e-11 Score=109.83 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=123.9
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..+..+...+...|++++|...+++++.. .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..++..+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 35566777777888888888888887765 34456677777777788888888888887777665 44556667777777
Q ss_pred HhcCChhHHHHHHHHc-CC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 043144 165 CRLGEIDNALQVLERM-SV---APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQA 240 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 240 (580)
...|++++|.+.++++ .. +.....+..++..+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776 11 1223345556666666666666666666666543 22344555556666666666666
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 241 MKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666665554 12244444455555555666666665555443
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.9e-08 Score=91.43 Aligned_cols=294 Identities=12% Similarity=0.031 Sum_probs=202.2
Q ss_pred hcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 043144 268 KEGRLDEAIKFLNDMPS-YGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS-VVTFNILINFLCRKGLLGRA 345 (580)
Q Consensus 268 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 345 (580)
-.++...|...+--+.. .-++.|+.....+...+...|+.++|...|++....+ |+ ........-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence 34555555554444333 2245677778888888888888888888888877653 32 22333334445667888877
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144 346 IDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNK 425 (580)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 425 (580)
..+...+.... +.....|..-+......++++.|+.+-++.++.... ++..+..-..++...|+.++|.-.|+..+..
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 77777665541 113334444455556678888888888888775332 4446666667788888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHHHhCCCCCCHHH
Q 043144 426 HCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLV-GGLS-REGKVDEAIKLFHDLERLGVRPNVIT 503 (580)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 503 (580)
. +-+...|..++..|...|++.+|.-+-+..... +..+..++..+. ..|. .-.--++|.+++++..+..+. -...
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~A 440 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPA 440 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHH
Confidence 4 345778888999999999988888877766553 334555555442 2232 223357788888887765432 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK 570 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 570 (580)
.+.+...|...|.++.++.++++.+.. .||......|++.+...+.+.+|.+.|..+.+.++...
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 677888888889999999999888864 78888888899999888999999998888888775543
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=8.7e-09 Score=97.93 Aligned_cols=420 Identities=14% Similarity=0.077 Sum_probs=249.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCC-CCCcchHHHHHHHHHhcCCh
Q 043144 124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSV-APDVVTYNTILRTLCDSGKL 202 (580)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 202 (580)
+=++.+.+.|++++|.....++...+ |.+...+..-+-+..+.+.+++|+.+.+.-+. ..+...+..-+.+..+.+..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 33566789999999999999999876 66777777777888999999999988776521 22222222334455689999
Q ss_pred hHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 203 NLAMEVLHKQLEKECYP-DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRLDEAIKFLN 280 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (580)
++|+..+. +..+ +..+...-...+.+.|++++|.++|+.+.+.+.+. +...-..++.+ +..-.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHH
Confidence 99999887 2233 33466666778999999999999999998764321 11111112211 1111111 222
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCC--Chh-----hHHHHHHHHHhcCCHHHHH
Q 043144 281 DMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG-------CSP--SVV-----TFNILINFLCRKGLLGRAI 346 (580)
Q Consensus 281 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~--~~~-----~~~~l~~~~~~~g~~~~a~ 346 (580)
...... ..+...+....+.+...|+|.+|+++++...+.+ -.. +.. .-..|...+-..|+.++|.
T Consensus 166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 222210 1122333444556778899999999998883221 000 110 1223445566789999999
Q ss_pred HHHHHhhhCCCCCCHhh----HHHHHHHHHh---------------------------------------------cCCH
Q 043144 347 DILEKMPKHGCTPNSLS----YNPVLHGFCK---------------------------------------------EKKM 377 (580)
Q Consensus 347 ~~~~~~~~~~~~~~~~~----~~~l~~~~~~---------------------------------------------~~~~ 377 (580)
.++...++.... |... -|.++..-.. .+..
T Consensus 245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999888876543 3211 1111111000 0001
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-
Q 043144 378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALC-KDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLE- 455 (580)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~- 455 (580)
+.+.++-... -+..|....-+.+..+.. +.....++.+++....+........+...++......|+++.|++++.
T Consensus 324 ~q~r~~~a~l--p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASL--PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhC--CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1111111000 011222222222222222 222466777777777665533335566677788889999999999998
Q ss_pred -------HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144 456 -------EMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL------GVRPNVITYNSIMLGLCKARQTYRAID 522 (580)
Q Consensus 456 -------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 522 (580)
...+.+.. +.+...+...+.+.++.+.|..++.++... +-..-..++..++..-.+.|+-++|..
T Consensus 402 ~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 402 FLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 45544433 445566677777777766677777766421 101112334445555567799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 523 ILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 480 ~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999864 78888888898888764 566776665544
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=107.09 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=186.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 043144 328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTAL 406 (580)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~ 406 (580)
.-+.+.++|.+.|.+.+|.+.++..++. .|-+.+|..|-..|.+..+++.|+.++.+.++. .|-.+ ....+...+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 3366788889999999999988887776 456778888888999999999999999888775 34444 455667778
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144 407 CKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI 486 (580)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 486 (580)
-..++.++|.++++...+.+ +.++....++...|...++++-|+++++++...|+. ++..|+.+.-+|...+.++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88888999999999888766 455666667777888889999999999999988854 7888888888888999999999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 487 KLFHDLERLGVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 487 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..|+++...--.|+ ..+|..+.......|++..|...|+-.+..+ +.+...++.|+-.-.+.|+.++|+.+++.+..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99988875433343 4578788878888899999999998888653 55677888888778889999999999988877
Q ss_pred CCCC
Q 043144 565 RGVV 568 (580)
Q Consensus 565 ~g~~ 568 (580)
..+.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 6543
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=8.8e-12 Score=109.06 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcC
Q 043144 123 TSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSG 200 (580)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 200 (580)
+.+..+|.+.|-+.+|.+-|+...+. .|-+.||..|-..|.+..+++.|+.+|.+. ..|-|+.....+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34555666666666666666555554 344555555566666666666666666554 22333333444555555556
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 201 KLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLN 280 (580)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (580)
+.++|.++|+..++.. +.++.....+...|.-.++.+-|+..|+.++..|+. ++..|+.+.-+|.-.++++-++..|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666555543 224444444555555555566666666666555544 55555555555555555555555555
Q ss_pred HhhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 281 DMPSYGCQPN--VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK 354 (580)
Q Consensus 281 ~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (580)
+....--.|+ ...|..+.......|++..|.+.|+-.+..+ +.+...++.|.-.-.+.|+++.|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5443221222 2345555555555555555555555555442 22334555555555555555555555554443
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=8.3e-10 Score=109.32 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHH
Q 043144 467 ITYSSLVGGLSREGKVDEAIKLFHDLERL--GVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPT-EATYTIL 542 (580)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l 542 (580)
..|..|+.-+......+.|..+.++.... .+..+..-+..+.+.+.+.+....+.++++++.+.-. .|. ..++..+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 45778888888888899999888887532 2334556678888888999999999999998876411 222 4566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144 543 IEGIAYEGLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~g~~~ 569 (580)
.......|+.+.-.++.+-+...|+..
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 788888999999999999888888765
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=2.7e-09 Score=104.44 Aligned_cols=432 Identities=13% Similarity=0.017 Sum_probs=279.5
Q ss_pred CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 043144 80 LNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVP-DVITYN 158 (580)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 158 (580)
+.++...|-.+.-++.+.|+++.+.+.|++.... .......|..+...|...|.-..|..+++........| |+..+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445567777888889999999999999999776 34456789999999999999999999999877654333 444444
Q ss_pred HHHHHHH-hcCChhHHHHHHHHc-C------CCCCcchHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 043144 159 VLISGYC-RLGEIDNALQVLERM-S------VAPDVVTYNTILRTLCDS-----------GKLNLAMEVLHKQLEKECYP 219 (580)
Q Consensus 159 ~l~~~~~-~~g~~~~A~~~~~~~-~------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 219 (580)
..-..|. +.+..++++.+..++ + -.-....|..++-+|... ....++++.+++.++.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3334443 367778887777665 1 112344566666555432 1345778888888876532
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 043144 220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR 299 (580)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 299 (580)
|......+.--|+..++++.|.+...+..+.+...+...|..|+-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3344444556688899999999999999998667789999999999999999999999998876531 112222222222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCCCHhhHHHHHHHHHhcC--
Q 043144 300 SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK--HGCTPNSLSYNPVLHGFCKEK-- 375 (580)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-- 375 (580)
.-...++.+++......++.-- . +..... ..++-....+....+.- ....-...++..+.......+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~w-e-~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALW-E-AEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHH-H-hhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 3334566777766655554320 0 000000 11111122222222111 011111222222222111111
Q ss_pred -CHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 043144 376 -KMDRAIEYLEIMVSRGCYPD------IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE 448 (580)
Q Consensus 376 -~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 448 (580)
..+..+..+.. . ..|+ ...|......+.+.+..++|...+.+..... +-....|......+...|+.+
T Consensus 627 ~~se~~Lp~s~~--~--~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 627 AGSELKLPSSTV--L--PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred cccccccCcccc--c--CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 11111110000 0 1122 1245566677888888899988888877654 344566777777788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIK--LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILAD 526 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 526 (580)
+|.+.|......+ +-++.....+...+.+.|+..-|.. ++..+.+.++. +...|..+...+.+.|+.++|.+.|..
T Consensus 702 EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 702 EAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999999888653 2346678889999999998777777 99999988765 889999999999999999999999998
Q ss_pred HHHc
Q 043144 527 MVTR 530 (580)
Q Consensus 527 ~~~~ 530 (580)
....
T Consensus 780 a~qL 783 (799)
T KOG4162|consen 780 ALQL 783 (799)
T ss_pred HHhh
Confidence 8754
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.1e-09 Score=99.17 Aligned_cols=425 Identities=13% Similarity=0.102 Sum_probs=253.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
-++.+..|+++.|+..|-+++.. .|++...|+.-..+|++.|++++|++=-.+.++.. |.=+..|+..+.++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 45677889999999999999988 45688899989999999999999998877777765 33456889999999999999
Q ss_pred hHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHhHHHHHHHHH
Q 043144 171 DNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES-GVGQAMKLLDEM 247 (580)
Q Consensus 171 ~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~ 247 (580)
++|+.-|.+- .. +.|...++.+..++.- +.. +.+.| .+...|..+...-.... ..+.+.....+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-ADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-hhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999886 33 3445667777776611 111 01111 11112221111100000 001111111111
Q ss_pred HHcCCCCCHhHH---HHHHHHHHhcCCHHH-HHHHHHHhh-hCCCCC----------------------CHHHHHHHHHH
Q 043144 248 RNKGCIPDVVTY---NVLVNGICKEGRLDE-AIKFLNDMP-SYGCQP----------------------NVITHNIILRS 300 (580)
Q Consensus 248 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~-A~~~~~~~~-~~~~~~----------------------~~~~~~~ll~~ 300 (580)
...+ +.++..| ..++.+.......+. ....-..+. ..+..| -..-...+.++
T Consensus 155 ~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 155 IQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred hhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 1111 0000000 001111110000000 000000000 000000 11224456777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH-------HHHHHHh
Q 043144 301 MCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNP-------VLHGFCK 373 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~ 373 (580)
..+..++..|.+.+...++.. .+..-++....+|...|.+..+....+...+.|.. ...-++. +..+|.+
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 778888889999888888764 46666777788888889888888888777766543 2222322 3346666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHH
Q 043144 374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMK 452 (580)
Q Consensus 374 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 452 (580)
.++++.++..|.+.+.....|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|.+
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHH
Confidence 77888888888887765434332 222333445544444433322 221 112222555678899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043144 453 LLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC 532 (580)
Q Consensus 453 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 532 (580)
.|.+++... +-|...|..-.-+|.+.|.+..|+.-.+..++.++. ....|..=+.++....+|+.|.+.|++.++..
T Consensus 380 ~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d- 456 (539)
T KOG0548|consen 380 HYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD- 456 (539)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999998875 557788888888999999999999988888876533 45566666667777788999999999888763
Q ss_pred CCCHHHHHHHHHHHH
Q 043144 533 KPTEATYTILIEGIA 547 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~ 547 (580)
+.+......+.++..
T Consensus 457 p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVE 471 (539)
T ss_pred chhHHHHHHHHHHHH
Confidence 333344444444443
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=5.4e-10 Score=108.64 Aligned_cols=238 Identities=19% Similarity=0.152 Sum_probs=172.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 043144 326 VVTFNILINFLCRKGLLGRAIDILEKMPKH-----GC-TPNSLS-YNPVLHGFCKEKKMDRAIEYLEIMVSR-----GCY 393 (580)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~ 393 (580)
..+...+..+|...|+++.|..+++..++. |. .|...+ .+.+...|...+++++|..+|++++.- |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666888888888888888888776653 21 122222 233567788899999999999988642 222
Q ss_pred -CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---C
Q 043144 394 -PDI-VTYNTLLTALCKDGKVDVAVEILNQLSNK-----H-CSPV-LITYNTVIDGLSKVGKTEQAMKLLEEMRTK---G 461 (580)
Q Consensus 394 -~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~ 461 (580)
|.+ .+++.|..+|.+.|++++|...++++.+. + ..|. ...++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 37888888999999999998888776431 1 1122 234677788888999999999999876543 1
Q ss_pred CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 462 LKPD----TITYSSLVGGLSREGKVDEAIKLFHDLERL----GV--RPN-VITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 462 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+.++ ..+++.|...|...|++++|.+++++++.. +- .+. ...++.|...|.+.+++++|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357899999999999999999999998632 11 122 446788999999999999999988876531
Q ss_pred ----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 531 ----S--CKPTEATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 531 ----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
| .+....+|..|+..|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 12235688999999999999999999998886
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=1.7e-09 Score=107.23 Aligned_cols=459 Identities=15% Similarity=0.103 Sum_probs=255.0
Q ss_pred ccccccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043144 73 SGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVP 152 (580)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 152 (580)
..+...++.|+.++|..+|..|+..|+.+.|- +|..|.-...+.....++.++.+....++.+.+. .|
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 34556677777888888888888888887777 8887776666667777888887777777776655 56
Q ss_pred CHHHHHHHHHHHHhcCChhH---HHHHHHHc-------CCC-CC-------------cchHHHHHHHHHhcCChhHHHHH
Q 043144 153 DVITYNVLISGYCRLGEIDN---ALQVLERM-------SVA-PD-------------VVTYNTILRTLCDSGKLNLAMEV 208 (580)
Q Consensus 153 ~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-------~~~-~~-------------~~~~~~l~~~~~~~g~~~~A~~~ 208 (580)
.+.+|..|..+|...||... ..+.++.+ ++. |. ...-...+....-.|-++.++++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887543 22212221 110 00 00112223333333444444444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 043144 209 LHKQLEKECYPDVITYTILIEATCK-ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGC 287 (580)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (580)
+..+..... ......+++-+.. ...+++-........+ .|+..++...+.+...+|+.+.|..++.+|.+.|+
T Consensus 162 l~~~Pvsa~---~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAW---NAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCcccc---cchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 433322110 0011111222222 1222333332222222 46777888888877778888888888888888887
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043144 288 QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPV 367 (580)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 367 (580)
+.+.+-+-.++.+ .++..-+..+++.|.+.|+.|+..|+......+..+|....+... .+.........+..+
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQLAHGFTAAVRSAA 308 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cchhhhhhHHHHHHH
Confidence 7777666666554 667777777777777788888887777666666654442221111 110000012222333
Q ss_pred HHHHHhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 043144 368 LHGFCKEKKMDR-----AIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH---CSPVLITYNTVID 439 (580)
Q Consensus 368 ~~~~~~~~~~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~ 439 (580)
..+.....+.+. ....+.+..-.|......+|...+. ....|.-++...+-..+.... ...++..|..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 322111112111 1222222222344433344443333 334677788888877775432 1233445555444
Q ss_pred HHHhCCC----------------------HHHHHHHHHHHHHCCCCCCH----------------------------HHH
Q 043144 440 GLSKVGK----------------------TEQAMKLLEEMRTKGLKPDT----------------------------ITY 469 (580)
Q Consensus 440 ~~~~~g~----------------------~~~A~~~~~~m~~~~~~p~~----------------------------~~~ 469 (580)
-|.+.-+ ..+..+++... .||. ..-
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~ 462 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIA 462 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHH
Confidence 4432111 11111111111 1111 122
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 043144 470 SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR--SCKPTEATYTILIEGIA 547 (580)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 547 (580)
+.++..|++.-+..+++..-+.....-+ ...|..|+.-+......+.|..+..+.... ....+..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 4455566666666666655554443211 256888999999999999999998887632 23445566788889999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 043144 548 YEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~ 565 (580)
+.+....+..+++++.+.
T Consensus 540 r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSS 557 (1088)
T ss_pred HhHHHHHHHHHHhhhhHH
Confidence 999999999999998873
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=6.5e-09 Score=90.28 Aligned_cols=358 Identities=14% Similarity=0.123 Sum_probs=224.3
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV-LISG 163 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~ 163 (580)
-.+...+..+++..++.+|++++..-.++ .+.+....+.+..+|....++..|...++++-... |...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 35667778888899999999999887666 34466778888899999999999999999987653 44433332 3455
Q ss_pred HHhcCChhHHHHHHHHcCCCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 043144 164 YCRLGEIDNALQVLERMSVAPDVVTYNTILR--TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 241 (580)
+.+.+.+..|+.+...++..++...-..-++ .....+++..+..+.++....| +..+.+.......+.|+++.|.
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 6678889999999998854444332222222 2345778888888877765433 5556666666677889999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144 242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG 321 (580)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 321 (580)
+-|+...+.+--.....||.-+ +..+.|+++.|++...++.++|++..+..-.-+..--...+....-..+....
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa---- 239 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA---- 239 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH----
Confidence 9999888754222466676444 44567888999999888888775432211000000000000000011111111
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144 322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH-GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYN 400 (580)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (580)
-+..+|.-...+.+.++++.|.+.+-.|+-+ ....|+++...+.-. -..+++....+-+.-++...+- ...||.
T Consensus 240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFA 314 (459)
T KOG4340|consen 240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFA 314 (459)
T ss_pred ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHH
Confidence 1234555556677899999999999888754 234567776655422 2245566666666666665443 456888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 401 TLLTALCKDGKVDVAVEILNQLSNKHC-SPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
.++-.||+..-++.|-+++.+-..... -.+...|+.+=..-...-.+++|++-++.+.
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999888865332221 1233444433222234456677776665543
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=9.6e-09 Score=101.33 Aligned_cols=289 Identities=17% Similarity=0.171 Sum_probs=157.6
Q ss_pred HHHHHhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-h----
Q 043144 161 ISGYCRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC-K---- 233 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~---- 233 (580)
...+...|++++|++.+++- ..-.| .......+..+.+.|+.++|..+|+.+++.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 34455667777777776665 22233 3344555666667777777777777777665 44444433333322 1
Q ss_pred -cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144 234 -ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLD-EAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAE 311 (580)
Q Consensus 234 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 311 (580)
..+.+....+|+++...- |.......+.-.+.....+. .+..++..+...|+++ ++..+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 124555566666665542 22222211211111111222 3334444455555432 2333333343333333333
Q ss_pred HHHHHHHHc----C----------CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043144 312 RLLAEMVLK----G----------CSPSVV--TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK 375 (580)
Q Consensus 312 ~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (580)
.++...... + -+|... ++..+.+.|...|++++|++.+++.+++.+. .+..|..-...+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 344333221 0 123332 3355567777788888888888877776332 3566677777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhCCCH
Q 043144 376 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT------Y--NTVIDGLSKVGKT 447 (580)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g~~ 447 (580)
++.+|.+.++.....+.. |-..-+..+..+.+.|++++|..++..+...+..|.... | .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 888888888877766443 555666667777778888888888777766553222211 1 3345667777777
Q ss_pred HHHHHHHHHHH
Q 043144 448 EQAMKLLEEMR 458 (580)
Q Consensus 448 ~~A~~~~~~m~ 458 (580)
..|++.|..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 77777666544
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=9.7e-10 Score=92.11 Aligned_cols=195 Identities=16% Similarity=0.126 Sum_probs=136.3
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC 165 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (580)
....+.-.|...|++..|.+-++.+++. .|.+..+|..+...|-+.|..+.|.+.|++..... |.+..+.|..+..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4456666777888888888888888776 45566777777778888888888888888877766 556677777888888
Q ss_pred hcCChhHHHHHHHHcCCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 043144 166 RLGEIDNALQVLERMSVAPD----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 241 (580)
..|++++|...|++.-..|+ ..+|..++-+..+.|+.+.|...|++.++... ....+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 88888888888887722232 45677777777777777777777777777642 23445556667777777777777
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (580)
..++.....+. ++..+.-..|..-...|+.+.+.++=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766553 5666666666666667776666655444443
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.9e-09 Score=97.31 Aligned_cols=413 Identities=16% Similarity=0.095 Sum_probs=256.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChh
Q 043144 126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLN 203 (580)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~ 203 (580)
.++.+..|+++.|..+|...+... |++...|..-..+|++.|++++|++=-.+. ...|+ ...|+..+.++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 456788999999999999999888 568889999999999999999999876665 55666 567999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH-----HHHhcCCHHHHHHH
Q 043144 204 LAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN-----GICKEGRLDEAIKF 278 (580)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~ 278 (580)
+|+..|.+-++.. +.+...+..+..++. .+.+. .+. -.++..|..+.. .+...-.+..-++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~---~~~-----~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA---DQL-----FTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh---hhh-----ccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999998875 335556666666651 11111 110 012223322221 11111111111111
Q ss_pred HHHhhh-CCCCC-CHHHHHHHHHH-------HHhcCC--------hH----HHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 043144 279 LNDMPS-YGCQP-NVITHNIILRS-------MCSTGR--------WM----DAERLLAEMVLK-GCSPSVVTFNILINFL 336 (580)
Q Consensus 279 ~~~~~~-~~~~~-~~~~~~~ll~~-------~~~~~~--------~~----~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 336 (580)
+..-.. .+... +.....++... ....+. .. .......+..+. ....-..-...+.++.
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 111100 00000 11000000000 000000 00 000000000000 0000111234566777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhc
Q 043144 337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-------TYNTLLTALCKD 409 (580)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~ 409 (580)
.+..+++.+.+.+....+.. -+..-++....+|...|.+.++...-....+.|.. ... .+..+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 77788888888888887764 35555666677888888888777776666655432 111 222344466677
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHH
Q 043144 410 GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSREGKVDEAIKL 488 (580)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 488 (580)
++++.|+..|.+.......|+. ..+....+++....+...-. .|.. .-...-...+.+.|++..|...
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 7888888888887765544332 22233445555555554432 2332 1222336678899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
|.+++...+. |...|....-+|.+.|.+..|++-.+..++.. ++....|..=+.++....+|+.|.+.|++..+.++.
T Consensus 381 YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999988755 88999999999999999999999988888763 556777887788888999999999999999887743
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7e-08 Score=87.83 Aligned_cols=395 Identities=10% Similarity=0.034 Sum_probs=234.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVG-KTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
.-.+..|...++-+.|+....+.....-. .-.+.++..+.+.| +-.++.--+...+..- +........++..-
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL~~i~~ll~l~-- 174 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMALQVIEALLELG-- 174 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHHHHHHHHHHHh--
Confidence 45678888889999998887765433111 12333443333333 2223332233332211 21111111111111
Q ss_pred cCChhHHHHHHHHcCCCCCcchHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144 167 LGEIDNALQVLERMSVAPDVVTYNTILRTLC--DSGKLNLAMEVLHKQLEK-ECYPDVITYTILIEATCKESGVGQAMKL 243 (580)
Q Consensus 167 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 243 (580)
..-.+.+--....+..+|+......-+.+++ -.++-..|...+-.+... -++-++.....+...+...|+.++|...
T Consensus 175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 1122333333333344555444444444443 344444444444333322 3455777888888899999999999999
Q ss_pred HHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144 244 LDEMRNKGCIPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC 322 (580)
Q Consensus 244 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 322 (580)
|+.....+ |+ +.........+...|+++....+...+.... ......|..-+......+++..|+.+-++.++..
T Consensus 255 Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 255 FSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 98887653 32 2233333444556778777777766665432 1233344444555566778888888887777653
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
+.+...+-.-...+...++.++|.-.|+......+ .+..+|..++.+|...|.+.+|.-.-+...+. ...+..++..+
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 23344444445667778888888888887766532 36778888888888888888887766655443 22244444444
Q ss_pred H-HHHH-hcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144 403 L-TALC-KDGKVDVAVEILNQLSNKHCSPV-LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479 (580)
Q Consensus 403 i-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 479 (580)
. ..+. ...--++|..+++...... |+ ...-+.+...+...|..++++.++++.... .||....+.|.+.+...
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHh
Confidence 2 2222 1122377888887776654 43 344566677777888888888888887753 67888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 043144 480 GKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~ 498 (580)
+.+++|.+.|..+.+.+++
T Consensus 485 Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hhHHHHHHHHHHHHhcCcc
Confidence 8888888888888776544
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=1.7e-09 Score=101.04 Aligned_cols=220 Identities=14% Similarity=0.052 Sum_probs=147.9
Q ss_pred HHHcCChHHHHHHHHHHHhCCC-CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 94 LVRNGELEEGFKFLESMVYHGD-IP--DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
....++.+.++.-+.+++.... .| ....|..+...|...|++++|...|++..+.. |.++..|+.++..+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 3344567888888888886422 12 24567788888899999999999999998876 66788999999999999999
Q ss_pred hHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144 171 DNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 248 (580)
Q Consensus 171 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 248 (580)
++|.+.|++. ...| +..+|..++.++...|++++|.+.|++..+.. |+..........+...+++++|...|....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999988 4444 46678888888999999999999999988865 433222222223445678888988887655
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144 249 NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS---YGC---QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG 321 (580)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 321 (580)
... .++...+ .+ .....|+..++ +.+..+.+ ... +.....|..+...+...|++++|...|+.+.+.+
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2222222 22 22334554433 23333321 110 1123467777777777788888888887777664
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=5.2e-10 Score=108.75 Aligned_cols=235 Identities=16% Similarity=0.126 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHc--------C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-
Q 043144 154 VITYNVLISGYCRLGEIDNALQVLERM--------S-VAPDVVT-YNTILRTLCDSGKLNLAMEVLHKQLEK-----EC- 217 (580)
Q Consensus 154 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~- 217 (580)
..+...+...|...|++++|..+++.. + ..|.+.+ .+.+...|...+++.+|..+|++++.. |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334555667777777777777776665 1 1222222 334666677777777777777776642 10
Q ss_pred CC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHhhhC---C
Q 043144 218 YP-DVITYTILIEATCKESGVGQAMKLLDEMRNK-----GC-IPDVV-TYNVLVNGICKEGRLDEAIKFLNDMPSY---G 286 (580)
Q Consensus 218 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 286 (580)
.| -..+++.|..+|.+.|++++|...++.+.+. +. .|.+. .++.++..+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1335566666777777777777666665431 11 12222 3455666777777777777777664321 0
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 043144 287 CQP----NVITHNIILRSMCSTGRWMDAERLLAEMVLK-----G--CSPSVVTFNILINFLCRKGLLGRAIDILEKMPK- 354 (580)
Q Consensus 287 ~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 354 (580)
..+ -..+++.+...|...|++++|.++|+.++.. | ..-....++.+...|.+.+...+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2356777777788888888888888777653 1 111133566677777777777777777765432
Q ss_pred ---CCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 355 ---HGCT--PNSLSYNPVLHGFCKEKKMDRAIEYLEIMV 388 (580)
Q Consensus 355 ---~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 388 (580)
.|+. -...+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221 123567778888888888888888777765
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=5.3e-09 Score=87.80 Aligned_cols=199 Identities=16% Similarity=0.007 Sum_probs=150.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS 442 (580)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (580)
+...+.-.|.+.|+...|..-+++.++.++. +..++..+...|.+.|+.+.|.+.|+...+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3445666788888888888888888876322 34477788888888888888888888887766 345667777778888
Q ss_pred hCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 443 KVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
..|++++|...|++......- --..+|..+..+..+.|+.+.|...|++..+..+. ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 888888888888888765211 12457777777778888888888888888876654 4556777888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+++.....+ .++..++...++.-...|+.+.|.++=..+.+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888887765 488888888888888888888877766666554
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.5e-07 Score=91.43 Aligned_cols=210 Identities=15% Similarity=0.106 Sum_probs=123.4
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVY--------HGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDV 154 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 154 (580)
+...|.++.+.+.+..+++-|.--+-.|.. +....+...-..++......|..++|..+|++....+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 456888899988888887777655544421 1111111222334444678888899999988876532
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----------hCCC-------
Q 043144 155 ITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL----------EKEC------- 217 (580)
Q Consensus 155 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~------- 217 (580)
.|=..|...|.+++|+++-+.-..-.-..+|......+-..++.+.|++.|++.- ...+
T Consensus 831 ----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 831 ----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred ----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 3446667788888888887654211223467777777777888888888877532 2111
Q ss_pred --CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 043144 218 --YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHN 295 (580)
Q Consensus 218 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 295 (580)
..|...|.......-..|+++.|+.+|....+ |-++++..|-+|+.++|-.+-++- -|.....
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcY 971 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACY 971 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHH
Confidence 12344555555555667777777777766543 333444444455555555444332 1344444
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 043144 296 IILRSMCSTGRWMDAERLLAE 316 (580)
Q Consensus 296 ~ll~~~~~~~~~~~a~~~~~~ 316 (580)
.+.+.|-..|++.+|..+|-+
T Consensus 972 hlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 555555555555555555443
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=5.5e-09 Score=97.61 Aligned_cols=217 Identities=13% Similarity=-0.028 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043144 306 RWMDAERLLAEMVLKG-CSP--SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIE 382 (580)
Q Consensus 306 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (580)
..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555421 111 1234556666677777777777777777665433 56667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 043144 383 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL 462 (580)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 462 (580)
.|++.++..+. +..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...|++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777665322 34466666667777777777777777776654 322211111222334566777777776554321
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERL---GV--RP-NVITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
.|+...+ . ......|+..++ ..+..+.+. .+ .| ....|..++..+...|++++|+..|++.++.+
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222211 1 222234444333 233333311 11 01 23467777777888888888888888877664
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.23 E-value=9.9e-08 Score=96.20 Aligned_cols=456 Identities=12% Similarity=0.030 Sum_probs=283.0
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043144 99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLE 178 (580)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 178 (580)
+...|+..|-+.++. .+.-...|..|...|...-+...|.+.|+...+.+ +.+...+....+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrl-d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRL-DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 367778888777765 23334678899999988889999999999998887 6788889999999999999999999855
Q ss_pred HcC-CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 043144 179 RMS-VAP---DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP 254 (580)
Q Consensus 179 ~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 254 (580)
..+ ..| -...|...+-.|...++...|+.-|+..++.. +.|...|..+..+|...|++..|.++|.++.... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 442 111 12345556677888999999999999998875 3478899999999999999999999999887653 3
Q ss_pred CH-hHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHhcCChHH-------HHHHHHHHHHc
Q 043144 255 DV-VTYNVLVNGICKEGRLDEAIKFLNDMPSY------GCQPNVITHNIILRSMCSTGRWMD-------AERLLAEMVLK 320 (580)
Q Consensus 255 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~ 320 (580)
+. ..---....-+..|.+.+|+..+...... +...-..++..+...+...|-..+ +++.|.-.+..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22 12122233446789999999988876532 111112223222222333333333 33333332222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHH------HHHHHHHH-hhhCC--------------------CCCCHhhHHHHHHHHHh
Q 043144 321 GCSPSVVTFNILINFLCRKGLLG------RAIDILEK-MPKHG--------------------CTPNSLSYNPVLHGFCK 373 (580)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~-~~~~~--------------------~~~~~~~~~~l~~~~~~ 373 (580)
....+...|-.+.++|.-.-..+ ....++.. ....+ ...+..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 21223333333322221100000 00001100 11111 11234455555554443
Q ss_pred ----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 043144 374 ----E----KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG 445 (580)
Q Consensus 374 ----~----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 445 (580)
. .+...|+..+.+.++.. ..+..+|+.|.-+ ...|++.-|...|-...... +....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 1 22346778888777653 2366677777655 55577777777665554433 344667877888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE----RLGVRPNVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
+++-|...|...+... +.|...|..........|+.-++..+|..-- ..|--++...|.+........|++++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999999887653 3345566555555567788778888887632 2233455555655555566777777766
Q ss_pred HHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 522 DILADMVTR---------SCKPTEATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 522 ~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
...+.+... +.+.+...|...+....+.+.++.|.++..+++
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 655544321 335556677777777778888888877777654
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.6e-08 Score=87.98 Aligned_cols=416 Identities=14% Similarity=0.104 Sum_probs=248.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHH-HHHHHHHhc
Q 043144 122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYN-TILRTLCDS 199 (580)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~ 199 (580)
+.+++..+.+..+++.|++++..-.++. +.+......|+.+|....++..|-..++++ ...|...-|. .-.+.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 5667777788999999999998887775 557778888999999999999999999998 4445544443 335677788
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144 200 GKLNLAMEVLHKQLEKECYPDVITYTILI--EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK 277 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (580)
+.+..|+.+...|.+. |+...-..-+ ......+++..+..+.++....| +..+.+...-...+.|++++|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 9999999998877653 2222111112 22345788888888888776432 45555555556678899999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 278 FLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF----NILINFLCRKGLLGRAIDILEKMP 353 (580)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~ 353 (580)
-|+...+-+--.....|+..+ +..+.+++..|+++..++++.|+...+..- ...++.- ..|+. ..+....
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHHH-
Confidence 998887643222334555444 556788899999999999888765433211 0001100 00110 0010000
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144 354 KHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR-GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI 432 (580)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (580)
-...++.-...+.+.|+++.|.+.+..|.-+ ....|++|...+.-.- -.+++.+..+-+.-+.+.++ -...
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~E 311 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPE 311 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChH
Confidence 1223455556677899999999988887532 2245777766654322 23455556666666666654 3478
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGLSR-EGKVDEAIKLFHDLERLGVRPNVITYNSIMLG 510 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (580)
||..++-.|++..-++-|-.++.+-.....+ .+...|+ |++++.. .-..++|.+-++.+...-.. .......-+.-
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe 389 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQE 389 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999999998888653222111 1223333 4445443 34567776666555321000 00001111111
Q ss_pred HHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 511 LCKARQT---YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 511 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
-...++- ..|++-+++.++. -......-++.|+...++..+.++|+.-.+
T Consensus 390 ~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 390 ARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111111 1122222222222 112334445677888899999999887654
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=6e-07 Score=79.95 Aligned_cols=317 Identities=14% Similarity=0.096 Sum_probs=180.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcch-HHHHHH
Q 043144 117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVT-YNTILR 194 (580)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~ 194 (580)
.++.-..-+...+...|++..|+.-|...++.+ |.+-.++-.-...|...|.-..|+.-+.++ ...||-.. ...-+.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 344444556666777788888888877777654 334444555566677777777777777766 55666432 334455
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144 195 TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE 274 (580)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (580)
.+.+.|.++.|..-|+..++.+ |+..+ ..++..-+..+.+ -......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence 6777788888877777777764 22111 1111111111110 0111122333455677777
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 275 AIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK 354 (580)
Q Consensus 275 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (580)
|++....+.+.. +-|...+..-..+|...|++..|+.-++..-+.. ..+...+..+...+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 777777766543 4456666666677777777777776666655543 22444555566666677777777777766666
Q ss_pred CCCCCCHhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 043144 355 HGCTPNSLSYNPV-------------LHGFCKEKKMDRAIEYLEIMVSRGCYPDIV---TYNTLLTALCKDGKVDVAVEI 418 (580)
Q Consensus 355 ~~~~~~~~~~~~l-------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 418 (580)
. .||....... +......++|.++++..+.+.+..+..... .+..+..++...|++.+|+..
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 5 3333211111 112234456666666666666553331111 334445556666677777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144 419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK 460 (580)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (580)
..++.+.. +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 66666544 233566666666666666677777777666654
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=1.8e-07 Score=90.96 Aligned_cols=305 Identities=13% Similarity=0.023 Sum_probs=151.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGC-QPNV-ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF 335 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (580)
.|..+...+...|+.+++...+.+..+... .++. .........+...|++++|...+++..+.. |.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444444455555554444444332210 1111 111112223445566666666666665542 223323221 111
Q ss_pred HH----hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043144 336 LC----RKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 411 (580)
Q Consensus 336 ~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 411 (580)
+. ..+..+.+.+.++..... .+........+...+...|++++|...+++..+..+. +...+..+..++...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 11 233344444444331111 1112233344455666777777777777777765322 34566666777777777
Q ss_pred hHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhCCCHHH
Q 043144 412 VDVAVEILNQLSNKHCS-PVL--ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL-KPDTITY-S--SLVGGLSREGKVDE 484 (580)
Q Consensus 412 ~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~ 484 (580)
+++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 77777777776654321 221 2344566677777777777777777653321 1111111 1 22333334443332
Q ss_pred HHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCH
Q 043144 485 AIKL--F-HDLERLGV-RPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK--------PTEATYTILIEGIAYEGLA 552 (580)
Q Consensus 485 A~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~ 552 (580)
+.+. + ........ ..........+.++...|+.++|...++.+...... ...........++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1 11111100 111122234666777888999999988887653211 0122334444566789999
Q ss_pred HHHHHHHHHHHhCC
Q 043144 553 KEALDLLNQLCSRG 566 (580)
Q Consensus 553 ~~A~~~~~~~~~~g 566 (580)
++|.+.+......+
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887665
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=2.1e-07 Score=90.53 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=75.8
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGIC----KEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGR 306 (580)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 306 (580)
+...|++++|.+.+++..+.. +.+...+.. ...+. ..+..+.+.+.+.... ...+........+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCC
Confidence 444566666666666655542 112333331 11111 1233334444433311 1111222333344455566666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCH--hhHHHHHHHHHhcCCHHHHHHH
Q 043144 307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT-PNS--LSYNPVLHGFCKEKKMDRAIEY 383 (580)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~ 383 (580)
+++|...+++..+.. +.+...+..+...+...|++++|...+++....... ++. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666653 333445555666666666666666666665554221 111 2234455666666666666666
Q ss_pred HHHHH
Q 043144 384 LEIMV 388 (580)
Q Consensus 384 ~~~~~ 388 (580)
+++..
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 66654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=2.5e-07 Score=90.26 Aligned_cols=367 Identities=16% Similarity=0.140 Sum_probs=201.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043144 132 VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHK 211 (580)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (580)
..++.+|..+|-+ . .++ ...+.+|.....+++|+.+-+-.+.|.-...-.+.++++...|+-++|-++-
T Consensus 544 ~kkfk~ae~ifle---q---n~t---e~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk-- 612 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLE---Q---NAT---EEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK-- 612 (1636)
T ss_pred HhhhhHHHHHHHh---c---ccH---HHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc--
Confidence 3456777777632 1 111 2356778888889999988877765444555667788888899988887642
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC------
Q 043144 212 QLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY------ 285 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 285 (580)
. .+..+ .+.|..|.+.|....|.+....-.. +..|......+..++.+..-+++|-++|+++...
T Consensus 613 --~----sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~ 683 (1636)
T KOG3616|consen 613 --E----SDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALEC 683 (1636)
T ss_pred --c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHH
Confidence 1 12222 3567889999998887765422111 1224555555555555555555555555554421
Q ss_pred ----------------CCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043144 286 ----------------GCQPNVITHN-IILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDI 348 (580)
Q Consensus 286 ----------------~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 348 (580)
.++..+++.. .....+...|+++.|...|-+.. ..-..+.+......|.+|+.+
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~i 754 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISI 754 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhH
Confidence 0000000000 01111222233333332222110 111223334445566666666
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144 349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS 428 (580)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (580)
++.+..... -..-|..+..-|...|+++.|.++|.+.- .++..|.+|.+.|+++.|.++-.+... ..
T Consensus 755 ldniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e 821 (1636)
T KOG3616|consen 755 LDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PE 821 (1636)
T ss_pred HHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--ch
Confidence 666655422 22234555566666777777776665421 234456667777777777666544432 12
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 508 (580)
.....|.+-..-+-..|++.+|.+++-.. | .|+. .+..|-+.|..+..+++.++-.. ..-..|-..+.
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFA 889 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHH
Confidence 33444544455555667777776666433 2 3442 35567777777776666555421 11123445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQ 561 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.-|-..|+...|.+.|-++- -|..-++.|..++-|++|.++.+.
T Consensus 890 ~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 66777888888877765543 256667778888888888777654
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.3e-10 Score=75.61 Aligned_cols=49 Identities=51% Similarity=0.936 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS 477 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 477 (580)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665555666666666555554
No 94
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1e-10 Score=76.05 Aligned_cols=49 Identities=45% Similarity=0.959 Sum_probs=28.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144 254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC 302 (580)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (580)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=2.6e-07 Score=93.35 Aligned_cols=435 Identities=10% Similarity=-0.013 Sum_probs=253.3
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA-VPDVITYNVLISG 163 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~ 163 (580)
..|..|...|+...+...|.+-|+.+... .+.+...+....+.|+...+++.|..+.-...+... ..-...|...+-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeL-Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFEL-DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 46778888888888999999999999887 566788899999999999999999988443333221 1122334456677
Q ss_pred HHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHH
Q 043144 164 YCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDV-ITYTILIEATCKESGVGQA 240 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 240 (580)
|...++...|...|+.. -.|.|...|..++.+|...|++..|+++|.++...+ |+. ..-.-.....+..|.+.+|
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHH
Confidence 78888999999999987 335678899999999999999999999999887754 332 2222233445678999999
Q ss_pred HHHHHHHHHcC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH-------hhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 241 MKLLDEMRNKG------CIPDVVTYNVLVNGICKEGRLDEAIKFLND-------MPSYGCQPNVITHNIILRSMCSTGRW 307 (580)
Q Consensus 241 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~~~ll~~~~~~~~~ 307 (580)
...+..+.... ...-..++-.+...+.-.|-..+|.+.+++ ........+...|..+..+|.-.-..
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 99888876431 011122232233333333333334333333 22222223333333333322111100
Q ss_pred H--H-HH----HHHHHHHHcCC--------------------CCChhhHHHHHHHHHh----c----CCHHHHHHHHHHh
Q 043144 308 M--D-AE----RLLAEMVLKGC--------------------SPSVVTFNILINFLCR----K----GLLGRAIDILEKM 352 (580)
Q Consensus 308 ~--~-a~----~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----g~~~~a~~~~~~~ 352 (580)
+ . .. -++.+....+. ..+..+|..++..|.+ . .+...|+..+.+.
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 0 0 00 01111111111 1233455555554443 1 2234677777776
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144 353 PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI 432 (580)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (580)
++..- .+...|+.|.-. ...|++.-|...|-+-....+ ....+|..+.-.+.+..+++.|...|...+... +.+..
T Consensus 810 V~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~ 885 (1238)
T KOG1127|consen 810 VSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLV 885 (1238)
T ss_pred HHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhH
Confidence 66422 256667766554 556777777777766554422 245578888888888888888888888887765 34455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----------HhCCCC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMR----TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDL----------ERLGVR 498 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~~ 498 (580)
.|..........|+.-++..+|..-- ..|-.|+..-|-+........|+.++-+...+.+ .. +.+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p 964 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHP 964 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCc
Confidence 56555555556777777777766521 1122334333333333444555544433332222 22 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
.+...|...+...-+.+.+..|.+...++
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 24455655555555666666666655554
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=1.3e-06 Score=77.81 Aligned_cols=318 Identities=14% Similarity=0.082 Sum_probs=205.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHH
Q 043144 152 PDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY-TILI 228 (580)
Q Consensus 152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 228 (580)
.++.-..-++..+...|++..|+..|..+ +.+.+..++..-...|...|+...|+.-+.+.++. +||...- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444555677777777888888777766 33333445555566777777777777777777664 3553221 1223
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChH
Q 043144 229 EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWM 308 (580)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 308 (580)
..+.+.|.+++|..-|+.++... |+..+- ..++.+.-..++-+ .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 44667777777777777777663 221111 11111111111111 1223444567789999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 309 DAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMV 388 (580)
Q Consensus 309 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 388 (580)
.|+.....+++.. +-|...+..-..+|...|++..|+.=++...+...+ +...+.-+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999874 568888888899999999999999888777665444 66667777788889999999999999888
Q ss_pred HCCCCCCHHHH----HHH---------HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCCHHHHHH
Q 043144 389 SRGCYPDIVTY----NTL---------LTALCKDGKVDVAVEILNQLSNKHCSPVLIT---YNTVIDGLSKVGKTEQAMK 452 (580)
Q Consensus 389 ~~~~~~~~~~~----~~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~ 452 (580)
+. .||...+ ..| +......+++.++.+-.+...+......... +..+-.++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 75 5665422 111 1123455667777777776666552212222 3344455667788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144 453 LLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV 497 (580)
Q Consensus 453 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 497 (580)
...+.++.. +.|..++.--..+|.-...++.|+.-|+.+.+.+.
T Consensus 329 qC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 329 QCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 888877642 33467777777788888888888888888877653
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=2.4e-07 Score=90.42 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144 298 LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM 377 (580)
Q Consensus 298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (580)
+.+....+.|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455566666666666665442 22234555566666666666666666532 1234455666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144 378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 419 (580)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 419 (580)
+.|.++-++.. |+......|..-..-+-+.|++.+|.+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 66666655442 22333334444444455555555555544
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=1.4e-06 Score=96.03 Aligned_cols=371 Identities=12% Similarity=0.027 Sum_probs=225.5
Q ss_pred HHHHHhcCChhHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144 161 ISGYCRLGEIDNALQVLERMSVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ 239 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 239 (580)
...+...|++.+|.......+..+. ..............|+++.+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 3344455666666655555432111 011122233455567777777776654221111223333444555667899999
Q ss_pred HHHHHHHHHHcCC------CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCh
Q 043144 240 AMKLLDEMRNKGC------IPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTGRW 307 (580)
Q Consensus 240 A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~ 307 (580)
+...+....+.-. .+. ......+...+...|++++|...+++........+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9999987754310 111 112223345567899999999999887653111121 2345556667789999
Q ss_pred HHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcC
Q 043144 308 MDAERLLAEMVLKGC---SP--SVVTFNILINFLCRKGLLGRAIDILEKMPKH----GCT--P-NSLSYNPVLHGFCKEK 375 (580)
Q Consensus 308 ~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~ 375 (580)
++|...+.+...... .+ .......+...+...|+++.|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988875311 11 1234455677788899999999988876552 211 1 1233445556677789
Q ss_pred CHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhCC
Q 043144 376 KMDRAIEYLEIMVSRG--CYPD--IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS-PVLITY-----NTVIDGLSKVG 445 (580)
Q Consensus 376 ~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g 445 (580)
++++|...+.+..... ..+. ...+..+...+...|+.+.|...++........ .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 9999999988875421 1122 234555667788999999999998887542100 111111 11223445688
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 043144 446 KTEQAMKLLEEMRTKGLKPD---TITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRP-NVITYNSIMLGLCKARQT 517 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 517 (580)
+.+.|...+........... ...+..+..++...|++++|...++++... +..+ ...+...+..++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999877543211111 112345677888999999999999987542 2222 234566778889999999
Q ss_pred HHHHHHHHHHHHcC
Q 043144 518 YRAIDILADMVTRS 531 (580)
Q Consensus 518 ~~A~~~~~~~~~~~ 531 (580)
++|...+.++++..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=1.3e-06 Score=96.44 Aligned_cols=336 Identities=13% Similarity=-0.005 Sum_probs=214.1
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--C----CCCH--HHHHHHHHHHH
Q 043144 231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG--C----QPNV--ITHNIILRSMC 302 (580)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~--~~~~~ll~~~~ 302 (580)
....|+++.+...++.+.......+..........+...|+++++..++......- . .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777777776655321111122333444555677899999999988765421 0 1111 12222334466
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CC--CHhhHHHHHHHHHh
Q 043144 303 STGRWMDAERLLAEMVLKGCSPSV----VTFNILINFLCRKGLLGRAIDILEKMPKHGC---TP--NSLSYNPVLHGFCK 373 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 373 (580)
..|++++|...++.....-...+. ...+.+...+...|++++|...+++...... .+ ....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 799999999999998763111121 2345566677889999999999988765311 11 12344556677888
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 043144 374 EKKMDRAIEYLEIMVSR----GCY--P-DIVTYNTLLTALCKDGKVDVAVEILNQLSNKH--CSP--VLITYNTVIDGLS 442 (580)
Q Consensus 374 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 442 (580)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876542 211 1 12344556667778899999999998875431 112 2334455666778
Q ss_pred hCCCHHHHHHHHHHHHHCC--CCCCHHH--H--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 043144 443 KVGKTEQAMKLLEEMRTKG--LKPDTIT--Y--SSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIMLGLCK 513 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~--~~p~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 513 (580)
..|++++|.+.++...... ....... . ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998875421 1111111 0 1122444568999999999877654221111 1124567778889
Q ss_pred cCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 514 ARQTYRAIDILADMVTR----SCKPT-EATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 514 ~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
.|++++|...++++... +...+ ..+...+..++...|+.++|.+.+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988753 22222 3467778888999999999999999998765
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-05 Score=81.96 Aligned_cols=383 Identities=14% Similarity=0.122 Sum_probs=232.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHH
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSG--AVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRT 195 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 195 (580)
|+...+..+.++...+-+.+-+++++++.-.. +..+....|.|+-... ..+..+..+..+++.. -|. -.+...
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdn-yDa---~~ia~i 1057 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDN-YDA---PDIAEI 1057 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhcc-CCc---hhHHHH
Confidence 33444555566666666666666666655321 1122223333333322 3344555566665521 011 123444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144 196 LCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA 275 (580)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 275 (580)
....+-+++|..+|++.- .+......||. .-+.+++|.+.-+..- .+.+|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 555566677777765531 23344444443 2355566655544432 467788888888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 276 IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH 355 (580)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (580)
++-|-+.. |+..|..++....+.|.|++-.+++..+.+....|.. =+.|+-+|++.+++.+.++.+.
T Consensus 1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-----
Confidence 88776543 5667888888888888888888888777766544443 3567788888888777665542
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 043144 356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYN 435 (580)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 435 (580)
-|+.........-|...|.++.|.-+|..+ .-|..|...+...|++..|.+.-+++ .+..+|-
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 356667777777788888888887776543 34666777777777777776655544 2356777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR 515 (580)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 515 (580)
.+-.+|...+.+.-| +|--.++-....-+.-++..|-..|-+++-+.+++...... +.....|+.|+-.|++-
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-
Confidence 777777666655443 22222333455567778888888888888888888776433 23566777777777664
Q ss_pred CHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 043144 516 QTYRAIDILADMVTR-SCK------PTEATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 516 ~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
++++..+.++-.-.+ +++ .....|..+.-.|.+-..+|.|.
T Consensus 1327 kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 356655555443322 111 12456777776676666666553
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=8.1e-09 Score=94.91 Aligned_cols=251 Identities=14% Similarity=0.135 Sum_probs=127.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 043144 264 NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLG 343 (580)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 343 (580)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|+++.++. ++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33455677777775554 2222112233344456666777776654432 222222 445555544444443334445
Q ss_pred HHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144 344 RAIDILEKMPKHGCTP-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 422 (580)
Q Consensus 344 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 422 (580)
.+..-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443332221 2222222224455567777777666432 24555556666777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 423 SNKHCSPVLITYNTVIDGLS----KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
.+.+ .|... ..+..++. -.+.+.+|..+|+++.+. ..+++.+++.++.++...|++++|.+++.+..+.++.
T Consensus 158 ~~~~--eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID--EDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS--CCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC--CcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 6543 33222 22222222 233567777777776554 3456666677777777777777777777776654433
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 043144 499 PNVITYNSIMLGLCKARQT-YRAIDILADMVTR 530 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 530 (580)
+..++..++.+....|+. +.+.+++.++...
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 455555566555666655 4455566665543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.4e-06 Score=86.37 Aligned_cols=256 Identities=13% Similarity=0.129 Sum_probs=142.6
Q ss_pred ChhhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcC------------CC
Q 043144 118 DIIPCTSLIR--GFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMS------------VA 183 (580)
Q Consensus 118 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~ 183 (580)
|..+-..+++ .|...|+.+.|.+-.+.+. +..+|..+..+|.+..+.+-|.-.+-.|+ ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444443 3566777777776665554 34567777777777776666665555441 11
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 043144 184 PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLV 263 (580)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (580)
++ ..-....-.....|.+++|..+|++..+. ..|=..|-..|.+++|.++-+.--+.. =..+|....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 22222333345677788888888776553 234455666788888877765433221 134566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 043144 264 NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLG 343 (580)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 343 (580)
.-+...++.+.|++.|++... +-......|. .++.....+.+.+ .|...|.-..+..-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 666677788888888876431 1111111111 1111111122211 23344555555555667777
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 423 (580)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 423 (580)
.|+.+|..... |..++...+-.|+.++|-++-++- -|......|...|-..|++.+|..+|.+++
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777665432 455666666667777766655432 245555566667777777777777766553
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.9e-05 Score=79.09 Aligned_cols=400 Identities=11% Similarity=0.131 Sum_probs=199.8
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-HHHHH---HHH------HHHhCCCC---
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKT-RKATR---VME------IVEDSGAV--- 151 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~---~~~------~~~~~~~~--- 151 (580)
++...|..-.-+.++..--+.+++..+..|. .|..++|++...|....+- +.-++ .|+ -..++++.
T Consensus 839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 839 FPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred CChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 4556667777777888888888888888864 5777888888887765432 22111 111 11122111
Q ss_pred ----------------CCHHHHHHHHHHHHhcCChhHHH-----------HHHHHc-----CCCCCcchHHHHHHHHHhc
Q 043144 152 ----------------PDVITYNVLISGYCRLGEIDNAL-----------QVLERM-----SVAPDVVTYNTILRTLCDS 199 (580)
Q Consensus 152 ----------------~~~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~-----~~~~~~~~~~~l~~~~~~~ 199 (580)
.....|....+.+....+.+-=. ++.++. +...|+...+..+.++...
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta 997 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA 997 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence 11122333444444444433222 222222 3334566677788888889
Q ss_pred CChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144 200 GKLNLAMEVLHKQLEKECY--PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK 277 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (580)
+-..+-++++++++-.+.. .+...-+.|+-... .-+..+..+..+++-.-+ . -.+...+..++-+++|..
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD----a---~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD----A---PDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC----c---hhHHHHHhhhhHHHHHHH
Confidence 9999999999887754211 12222233332222 233344444444443221 1 112334445555566666
Q ss_pred HHHHhhhCCC---------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043144 278 FLNDMPSYGC---------------------QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL 336 (580)
Q Consensus 278 ~~~~~~~~~~---------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (580)
+|++....+- -..+..|..+..+-.+.|...+|++-|-+. .|+..|..+++..
T Consensus 1070 ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a 1143 (1666)
T KOG0985|consen 1070 IFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVA 1143 (1666)
T ss_pred HHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHH
Confidence 6655321000 012223444444444444444444433221 1334444444444
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144 337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 416 (580)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 416 (580)
.+.|.+++-.+.+....+....| ..=+.++-+|++.++..+..++. ..|+......+.+-|...|.++.|.
T Consensus 1144 ~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred HhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHH
Confidence 45555554444444333332222 22233444444444443332221 1234444444444455555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144 417 EILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (580)
-+|... .-|..+...+.+.|+++.|...-++. .+..||-.+-.+|...+.+.-|. |-..+
T Consensus 1215 l~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~ 1274 (1666)
T KOG0985|consen 1215 LLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLN 1274 (1666)
T ss_pred HHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCce
Confidence 444332 23555666666666666666554433 25567777777777666554332 22223
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 497 VRPNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
+-....-...++.-|...|-+++-+.+++..+
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 33345556778888888888888888777665
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=2.2e-08 Score=92.06 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP 353 (580)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (580)
+.+|..+|+++.+. .++++.+.+.++.++...|++++|.+++.+..
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444444443322 22333334444444444444444444444433
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.9e-08 Score=92.90 Aligned_cols=221 Identities=18% Similarity=0.140 Sum_probs=118.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
.-.+.++|+..+|.-.|+.++.. .|.+...|-.|.......++-..|+..+.++.+.+ |.+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq-dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ-DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh-ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34566777788888888877776 45667778777777777777777888887777776 55667777777777777777
Q ss_pred hHHHHHHHHc-CCCCCcchHHHHH---------HHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHhH
Q 043144 171 DNALQVLERM-SVAPDVVTYNTIL---------RTLCDSGKLNLAMEVLHKQLEK-ECYPDVITYTILIEATCKESGVGQ 239 (580)
Q Consensus 171 ~~A~~~~~~~-~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 239 (580)
.+|+..++.. ...|.. .|.... ..+.....+....++|-++... +..+|......|.-.|.-.|++++
T Consensus 370 ~~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 7777777765 111100 000000 0001111122222333333222 222344444455555555555555
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144 240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN-VITHNIILRSMCSTGRWMDAERLLAEM 317 (580)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (580)
|.+.|+.++...+ -|...||.|...++...+.++|+..|++..+. +|+ +.+...|.-+|...|.+++|.+.|-.+
T Consensus 449 aiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 5555555554421 14445555555555555555555555555443 222 233344444455555555555544443
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.00 E-value=5.1e-05 Score=76.62 Aligned_cols=451 Identities=14% Similarity=0.152 Sum_probs=249.1
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRG--FCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI 170 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 170 (580)
.....+++..|++...++++.. |+. .+..++.+ +.+.|+.++|..+++.....+ +.|..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 4456778999999999988762 333 23333333 579999999999998877665 44888999999999999999
Q ss_pred hHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------CHhH
Q 043144 171 DNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES----------GVGQ 239 (580)
Q Consensus 171 ~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~ 239 (580)
++|..+|++. +..|+......+-.+|++.+.+.+-.++--++-+ ..+.+...+=+++..+...- -..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 9999999998 5567777777777788888777665444333333 23334555555555544321 1234
Q ss_pred HHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144 240 AMKLLDEMRNKG-CIPDVVTYNVLVNGICKEGRLDEAIKFLND-MPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEM 317 (580)
Q Consensus 240 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 317 (580)
|.+.++.+.+.+ .--+..-.......+...|++++|++++.. ..+.-...+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666777776653 221222233334455678999999999943 333322334444456667788889999999999999
Q ss_pred HHcCCCCChhhHHHHHHHH----------------HhcCCHHHHHHHHHHhhhCCCCCCHhhHH-HHHHHHHhcCCHHHH
Q 043144 318 VLKGCSPSVVTFNILINFL----------------CRKGLLGRAIDILEKMPKHGCTPNSLSYN-PVLHGFCKEKKMDRA 380 (580)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A 380 (580)
...| +|. |....+.+ ...+..+...+..++....... ++.... -+..-+..-|+.+++
T Consensus 253 l~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 253 LEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred HHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-CcHHHHHHHHHHhcccCChHHH
Confidence 9886 232 33222211 1223344444444443332111 222211 122222345777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhCCC-----HH
Q 043144 381 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI-------TYNTVIDGLSKVGK-----TE 448 (580)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~ 448 (580)
...|-+-. |-.|- +..=+..|...=..+.-..++....... ++.. .+.+.+..-...|. .+
T Consensus 328 ~~~y~~kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 328 LSYYFKKF--GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHHHHHh--CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 65553322 11221 1111112222222233333333333221 1110 01111221122221 12
Q ss_pred HHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 449 QAMKLLEEMR---TKG------LKPDTI---------TYSSLVGGLSREGKVD---EAIKLFHDLERLGVRPNVITYNSI 507 (580)
Q Consensus 449 ~A~~~~~~m~---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l 507 (580)
.-..++.+.. ++| .-|+.. +.+.|++.+.+.++.. +|+-+++.-....+. |..+-..+
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlL 479 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLL 479 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHH
Confidence 2223332221 112 222222 2356777888877754 455555555544333 56666778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 508 MLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 508 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+..|+..|-+..|.++|+.+--+++..|.-.+. +...+...|++..+...++..
T Consensus 480 iriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 480 IRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 888888899999999888876555544433322 223445556666665555543
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.97 E-value=4e-05 Score=72.97 Aligned_cols=404 Identities=11% Similarity=0.072 Sum_probs=229.4
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 84 DFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
..+|+.|++-+... ..+++...++++... .|.....|..-+..-.+..+++....+|.+++.. ..+...|...+..
T Consensus 20 i~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 20 IDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHH
Confidence 35899999988777 999999999999876 5666789999999999999999999999999876 3456677776665
Q ss_pred HHh-cCChhHHHHHHH--------HcCCCC-CcchHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCChhhH
Q 043144 164 YCR-LGEIDNALQVLE--------RMSVAP-DVVTYNTILRTLC---------DSGKLNLAMEVLHKQLEKECYPDVITY 224 (580)
Q Consensus 164 ~~~-~g~~~~A~~~~~--------~~~~~~-~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~ 224 (580)
-.+ .|+...+.+..- +.+..+ ....|+..+..+- .+.+++....+|.+++..-+..=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 443 444444333222 224333 2334666554433 333566677778887764221111122
Q ss_pred HHH------HHHH-------HhcCCHhHHHHHHHHHHH--cCCCCCHh---------------HHHHHHHHHHhcCC---
Q 043144 225 TIL------IEAT-------CKESGVGQAMKLLDEMRN--KGCIPDVV---------------TYNVLVNGICKEGR--- 271 (580)
Q Consensus 225 ~~l------i~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g~--- 271 (580)
+.. |+.. -+...+..|+++++++.. .|...... .|..+|.-=..++-
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 211 1111 123456677777777653 23221111 14334332111110
Q ss_pred ---H--HHHHHHHHHhh-hCCCCCCHHHHHH-----HHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043144 272 ---L--DEAIKFLNDMP-SYGCQPNVITHNI-----ILRSMCSTGR-------WMDAERLLAEMVLKGCSPSVVTFNILI 333 (580)
Q Consensus 272 ---~--~~A~~~~~~~~-~~~~~~~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 333 (580)
. ....-++++.. -.+..|+.....+ .-+.+...|+ -+++..+++.....-...+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111112211 1122232211110 0111222333 334444555444321122223333332
Q ss_pred HHHHhc---CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 043144 334 NFLCRK---GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKD 409 (580)
Q Consensus 334 ~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 409 (580)
+.--.. +..+....++++++..-...-..+|..+|+...+..-...|..+|.++.+.+..+ ++.+.++++.-||.
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 221111 1244555566655543222233467777777777777888888888888776665 55677777776664
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHH
Q 043144 410 GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIK 487 (580)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 487 (580)
++..-|.++|+.-.+.. ..++.--...++-+.+.++-..|..+|++.+..++.|| ..+|..++.--+.-|++..+.+
T Consensus 415 kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 66788888888766544 23334445567777788888888888888887755544 4578888888888888888888
Q ss_pred HHHHHH
Q 043144 488 LFHDLE 493 (580)
Q Consensus 488 ~~~~~~ 493 (580)
+-++..
T Consensus 494 lekR~~ 499 (656)
T KOG1914|consen 494 LEKRRF 499 (656)
T ss_pred HHHHHH
Confidence 777764
No 108
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=1.3e-06 Score=81.51 Aligned_cols=218 Identities=10% Similarity=0.039 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHH
Q 043144 340 GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV--DVAV 416 (580)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~ 416 (580)
+..++|+.+..++++..+. +..+|+.-...+...| ++++++..++++.+..++ +..+|+....++.+.|.. +++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 4444555555555544222 3333443334444444 345555555555544322 223444333333334431 4445
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CC----HHHHHHHH
Q 043144 417 EILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE---GK----VDEAIKLF 489 (580)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~ 489 (580)
.+++.+.+.+ +-+..+|+....++...|+++++++.++++++.+. -|...|+.....+.+. |. .++...+.
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 5555555444 23455555555555555556666666666655442 2444444444333332 11 23445555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------
Q 043144 490 HDLERLGVRPNVITYNSIMLGLCKA----RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG--------------- 550 (580)
Q Consensus 490 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------- 550 (580)
.+++...+. |...|+.+...+... ++..+|.+++.+....+ +.+......|++.|+...
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 555554433 455555555555442 23345555555554432 334455555566555421
Q ss_pred ---CHHHHHHHHHHHH
Q 043144 551 ---LAKEALDLLNQLC 563 (580)
Q Consensus 551 ---~~~~A~~~~~~~~ 563 (580)
..++|.++++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 2356777777774
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=2.9e-07 Score=96.07 Aligned_cols=237 Identities=15% Similarity=0.025 Sum_probs=151.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKH-GCTP---NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-V 397 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~ 397 (580)
|.+...|-..|......++.++|+++.++++.. ++.- -...|.++++.-...|.-+...++|+++.+. -|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 344556777777777777777777777776653 1111 1235666666666667777777777777653 233 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGL 476 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~ 476 (580)
.|..|...|.+.+.+++|.++++.|.+..- .....|...++.+.+..+-+.|..++.+.++.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 667777777777777777777777776542 45667777777777777777777777777654111 1233344455555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 043144 477 SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTE--ATYTILIEGIAYEGLAKE 554 (580)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 554 (580)
.+.|+.+.+..+|+......++ ....|+.+++.-.++|+.+.++.+|++.+..++.|-. ..|...+..=...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6777777777777777655444 4566777777777777777777777777777666653 244455554455666666
Q ss_pred HHHHHHHHHh
Q 043144 555 ALDLLNQLCS 564 (580)
Q Consensus 555 A~~~~~~~~~ 564 (580)
+..+-.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=2.9e-07 Score=87.82 Aligned_cols=254 Identities=11% Similarity=0.062 Sum_probs=184.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043144 299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMD 378 (580)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (580)
.-+.+.|++.+|.-.|+..+..+ |-+...|..|.......++-..|+..+++.++..+. +....-.|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34667888999999999888875 557788999999999888888999999998887544 6677777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH----H-H--HHHHhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 379 RAIEYLEIMVSRGCYPDIVTYNT----L-L--TALCKDGKVDVAVEILNQL-SNKHCSPVLITYNTVIDGLSKVGKTEQA 450 (580)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~----l-i--~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A 450 (580)
.|+..++.-+...++ -...... . . ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|++++|
T Consensus 371 ~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 899998887664321 0000000 0 0 0011111223333444443 4444457888888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN-VITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
..+|+.++... +-|..+||.|...++...+.++|+..|.++.+.. |+ +.+...|.-+|+..|.+++|.+.|-+++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998753 3366789999999999999999999999999864 44 44555677789999999999999887764
Q ss_pred c---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144 530 R---------SCKPTEATYTILIEGIAYEGLAKEALDL 558 (580)
Q Consensus 530 ~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
. ...++...|..|=.++...++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1122456888888888888887755444
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1.1e-07 Score=93.04 Aligned_cols=225 Identities=18% Similarity=0.134 Sum_probs=182.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
+|-...-..+...+...|-...|..+|+++ ..|...+.+|...|+..+|..+..+..++ +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333344456778889999999999999865 35777889999999999999999888874 6899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144 403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV 482 (580)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 482 (580)
++......-+++|.++++...... -..+.......++++++.+.|+.-.+.+ +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA-------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARA-------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHH-------HHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 998888888899999988765431 1112222234789999999999887764 44567888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+.|.+.|.......+. +...|+.+..+|.+.|+-.+|...++++.+.+ ..+...|...+......|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999886544 78899999999999999999999999999887 666777888888889999999999999999
Q ss_pred HhCCCC
Q 043144 563 CSRGVV 568 (580)
Q Consensus 563 ~~~g~~ 568 (580)
......
T Consensus 614 l~~~~~ 619 (777)
T KOG1128|consen 614 LDLRKK 619 (777)
T ss_pred HHhhhh
Confidence 765433
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=6.6e-05 Score=71.51 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144 412 VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP-DTITYSSLVGGLSREGKVDEAIKLFH 490 (580)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (580)
.+....+++++.......-..+|...+..-.+..-+..|..+|.++.+.+..+ +..+.++++..++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666554322224557777777777888899999999998876666 5666777776655 457788999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 491 DLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
.-.+.- ..++..-...+.-+...++-..|+.+|++.+..+++++ ...|..+++-=..-|+...+.++-+++...-
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 765432 22444446777778888999999999999998866665 4689999988888999999999888876653
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=1.1e-06 Score=76.24 Aligned_cols=119 Identities=8% Similarity=0.062 Sum_probs=67.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC--HHHH
Q 043144 409 DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGL-SREGK--VDEA 485 (580)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 485 (580)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555444 3445556666666666666666666666665543 22455555555542 44444 3666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.++++++.+.++. +...+..++..+...|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655443 4555556666666666666666666666554
No 114
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=9e-06 Score=75.98 Aligned_cols=140 Identities=7% Similarity=0.044 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 043144 262 LVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG-RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKG 340 (580)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 340 (580)
+-..+...+..++|+.++.++.+.+ +-+..+|+....++...| .+++++..++.+.+.. +.+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3334444555566666666555442 223334444444444444 3455555555555443 223334444433343444
Q ss_pred CH--HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 341 LL--GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 405 (580)
Q Consensus 341 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 405 (580)
+. +++...++++++.... +..+|+.....+...|+++++++.++++++.++. +..+|+....+
T Consensus 121 ~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~v 185 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFV 185 (320)
T ss_pred chhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHH
Confidence 32 3445555555544332 4445555555555555555555555555554333 33344443333
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=4.6e-06 Score=87.52 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=129.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-----IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITY 434 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 434 (580)
+...|-..|....+.++.++|.++.++++.. +.+. ...|.+++..-...|.-+...++|+++.+.. .....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4556666677777777777777777776643 2111 1255566666566666666677777766643 234556
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 043144 435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-PNVITYNSIMLGLCK 513 (580)
Q Consensus 435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 513 (580)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+...-+.|..++.++.+.-++ -+.......+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 67777777777777777777777665 2345566777777777777777777777776654222 123344445555566
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144 514 ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 569 (580)
.|+.++++.+|+..+.. .|-....|..+++.-.++|+.+.++.+|++++..++.+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 77777777777776655 35556677777777777777777777777777766654
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=1.3e-06 Score=79.38 Aligned_cols=187 Identities=17% Similarity=0.067 Sum_probs=125.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL--ITYN 435 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 435 (580)
....+..+...+...|+++.|...|+++....+. |. ..++..+..++...|++++|...++.+.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 5566777778888889999999998888775322 11 136677788888889999999999888876522111 2344
Q ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144 436 TVIDGLSKV--------GKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNS 506 (580)
Q Consensus 436 ~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 506 (580)
.+..++... |++++|.+.|+++... .|+. ..+..+..... ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 555555544 6778888888888765 3332 22221111100 000 00 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 507 IMLGLCKARQTYRAIDILADMVTRS--CKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
+...|...|++++|+..++++++.. -+.....+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6677899999999999999998762 12335789999999999999999999999887654
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=1.5e-06 Score=75.09 Aligned_cols=166 Identities=16% Similarity=0.060 Sum_probs=133.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHH
Q 043144 115 DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTI 192 (580)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 192 (580)
.|.|..+ ......+...|+-+.+..+........ +.|......++....+.|++..|...|.+. ..++|..+|+.+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 3445555 667778888898888888887765433 567777777889999999999999999998 567889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 043144 193 LRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRL 272 (580)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (580)
+-+|.+.|+++.|...|.+.++.. +.+....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 999999999999999999998863 335667888888888999999999999988876432 677777788888889999
Q ss_pred HHHHHHHHHhhh
Q 043144 273 DEAIKFLNDMPS 284 (580)
Q Consensus 273 ~~A~~~~~~~~~ 284 (580)
++|..+...-..
T Consensus 219 ~~A~~i~~~e~~ 230 (257)
T COG5010 219 REAEDIAVQELL 230 (257)
T ss_pred HHHHhhcccccc
Confidence 999888766543
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=7.8e-07 Score=80.73 Aligned_cols=182 Identities=13% Similarity=0.030 Sum_probs=128.0
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HH
Q 043144 84 DFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI---IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVI---TY 157 (580)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 157 (580)
...+..+...+...|++++|...|++++... |.+. .++..+..++.+.|++++|...++.+.+..+ .+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence 3467788889999999999999999998763 2222 4678888999999999999999999987652 2222 56
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHc-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 043144 158 NVLISGYCRL--------GEIDNALQVLERM-SVAPDV-VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTIL 227 (580)
Q Consensus 158 ~~l~~~~~~~--------g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 227 (580)
..++.++... |++++|.+.|+++ ...|+. ..+..+..... .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR-------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH-------H-------HHHHHHH
Confidence 6666666654 7788899999887 333433 23322221111 0000 0 0012246
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 228 IEATCKESGVGQAMKLLDEMRNKGC--IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY 285 (580)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (580)
...+.+.|++++|...++...+... +.....+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778899999999999999887632 123567888999999999999999998887654
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=7.6e-07 Score=87.29 Aligned_cols=217 Identities=15% Similarity=0.136 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043144 257 VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL 336 (580)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (580)
..-..+...+...|-..+|..+|+++. .|...+.+|+..|+..+|..+..+-.++ +||+..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344567788899999999999999876 4677888999999999999999888874 78888998888887
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144 337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 416 (580)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 416 (580)
-...-+++|.++.+..... .-..+.......++++++.+.|+.-.+..+ ....+|-.+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888887765332 222233334457899999999998776532 24568888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144 417 EILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER 494 (580)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (580)
+.|....... +.+...||.+..+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999887765 4457889999999999999999999999999876 44566777777788999999999999998864
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=4.5e-06 Score=86.05 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG 474 (580)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 474 (580)
+...+..|.....+.|.+++|..+++...+.. +.+......++..+.+.+++++|+..+++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34455555555555566666666665555544 2223444455555555566666666555555542 223444455555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
++.+.|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555556666666666655543222 3455555555555556666666655555544
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=6.2e-06 Score=71.34 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144 365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV 444 (580)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 444 (580)
..+-..+...|+-+....+........ ..|.......+....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445566666777666666666644332 2255566667777777777777777777777655 56677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDIL 524 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 524 (580)
|++++|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+.. |..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777777652 224556777777777777777777777777665433 5566666777777777777777765
Q ss_pred HHH
Q 043144 525 ADM 527 (580)
Q Consensus 525 ~~~ 527 (580)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 544
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.3e-05 Score=83.58 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144 223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC 302 (580)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (580)
++..++.+|-+.|+.++|..+++++++.. +.|+.+.|.++..|... ++++|.+++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 45555555556666666666666665554 22555566666655555 666666655554432 34
Q ss_pred hcCChHHHHHHHHHHHHc
Q 043144 303 STGRWMDAERLLAEMVLK 320 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~ 320 (580)
..+++..+.+++..+...
T Consensus 181 ~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred hhhcchHHHHHHHHHHhc
Confidence 444555555555555543
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=4.1e-06 Score=72.81 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 043144 444 VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL-CKARQ--TYRA 520 (580)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 520 (580)
.++.+++...++..++.+ +.|...|..+...|...|++++|...|+++.+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555544443 334555555555555555555555555555554433 445555555442 34444 3555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 521 IDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
.+++++.++.. +.+...+..++..+...|++++|...++++.+...+
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55555555542 334555555555555555555555555555555443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.8e-05 Score=68.48 Aligned_cols=245 Identities=19% Similarity=0.170 Sum_probs=128.0
Q ss_pred cCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH-HHH
Q 043144 167 LGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM-KLL 244 (580)
Q Consensus 167 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~ 244 (580)
.|.+..++..-+.. ..+.++..-..+.++|...|++.....-. .. +-.|.......+......-++.+... ++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 55555555554444 22233344444555555555544332221 11 11222223333333332333333332 233
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP 324 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 324 (580)
+.+.......+......-+..|++.|++++|++...... +......-+..+.+..+++-|.+.++.|.+..
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 333333222222222233346677777777777766522 22233333444566677777777777777652
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144 325 SVVTFNILINFLCR----KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYN 400 (580)
Q Consensus 325 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (580)
+..+.+.|+.++.+ .+.+..|.-+|+++.+. .+|++.+.+.+..++...|++++|..+++..+..... ++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHH
Confidence 44556656665554 34567777777777664 4567777777777777777777777777777766443 556666
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHhCC
Q 043144 401 TLLTALCKDGKVDV-AVEILNQLSNKH 426 (580)
Q Consensus 401 ~li~~~~~~g~~~~-A~~~~~~~~~~~ 426 (580)
.++.+-...|...+ ..+.+.++....
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 66655555555433 334455554433
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=1.4e-06 Score=71.48 Aligned_cols=93 Identities=10% Similarity=-0.079 Sum_probs=49.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR 515 (580)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 515 (580)
.....+...|++++|...|+...... +.+...|..+..++...|++++|...|+++...++. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34445555555555555555555442 234455555555555555555555555555554432 4455555555555555
Q ss_pred CHHHHHHHHHHHHHc
Q 043144 516 QTYRAIDILADMVTR 530 (580)
Q Consensus 516 ~~~~A~~~~~~~~~~ 530 (580)
++++|+..+++.++.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2e-05 Score=68.24 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hC
Q 043144 369 HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS----KV 444 (580)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 444 (580)
..|+..+++++|++...... +......=+..+.+..+++-|...++.|.+.+ +..+.+-|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 44555566666666554411 12222222233444555566666666665532 2334444444433 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ 516 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 516 (580)
+...+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++++...... ++.+...++.+-...|.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 4455666666666553 3555566666666666666666666666666544433 34444334333333343
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3.5e-05 Score=66.21 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=144.2
Q ss_pred cCCHHHHHHHHHHhhhC---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043144 339 KGLLGRAIDILEKMPKH---G-CTPNSL-SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD 413 (580)
Q Consensus 339 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 413 (580)
..+.++..+++..++.. | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 46788888888877653 3 333433 35555667777889999999999987763 223333333333456678899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493 (580)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (580)
+|.++++.+.+.+ +.|..++---+.+.-..|+.-+|++-+.+..+. +..|.+.|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998877 455666666666666788888999888888876 56789999999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144 494 RLGVRPNVITYNSIMLGLCKAR---QTYRAIDILADMVTRSCKPTEATYTILIEGI 546 (580)
Q Consensus 494 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
-..|. ++..+..+...+...| +.+-|.++|.+.++.+ +.+...+..+.-++
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~-~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN-PKNLRALFGIYLCG 235 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC-hHhHHHHHHHHHHH
Confidence 65443 6666777877766655 4677888888888753 23444444444333
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=3.7e-06 Score=69.02 Aligned_cols=98 Identities=9% Similarity=-0.095 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY 548 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
+..+..++...|++++|...|+.+....+. +...|..++.++...|++++|...|+++.... +.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 334455556666666666666666554433 55555666666666666666666666666542 4455566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 043144 549 EGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 549 ~g~~~~A~~~~~~~~~~g~~ 568 (580)
.|++++|...+++.++..+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 66666666666666655443
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.60 E-value=0.0011 Score=67.41 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=131.0
Q ss_pred cHHHHHHH--HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 86 ESNNHLRR--LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 86 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
.+...+.+ +.+.|+.++|..+++.....+ +.|..+...+-.+|...|..++|..+|++.... .|+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH
Confidence 34444444 568899999998888775553 337788889999999999999999999999876 4667777778888
Q ss_pred HHhcCChhH----HHHHHHHcCCCCCcchHHHHHHHHHhcC-C---------hhHHHHHHHHHHhCC-CCCChhhHHHHH
Q 043144 164 YCRLGEIDN----ALQVLERMSVAPDVVTYNTILRTLCDSG-K---------LNLAMEVLHKQLEKE-CYPDVITYTILI 228 (580)
Q Consensus 164 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~-~~~~~~~~~~li 228 (580)
|.+.+++.+ |+++++.. +.+...+-++++...+.- . ..-|...++.+++.+ ...+..-...-.
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 988877654 55566543 445566556666555421 1 233455566666554 111111122222
Q ss_pred HHHHhcCCHhHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 229 EATCKESGVGQAMKLLDE-MRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
......|++++|+.++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 334467889999999943 3343233345555667778888999999998888888765
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=6e-05 Score=78.72 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP 353 (580)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (580)
.+..+..+|-+.|+.+++...++++++.. +.|+.+.|.++..|... ++++|.+++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44444555555555555555555555543 33444555555555544 5555555544443
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.5e-07 Score=54.76 Aligned_cols=32 Identities=59% Similarity=1.224 Sum_probs=19.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 251 GCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM 282 (580)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (580)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666555
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=1.4e-05 Score=82.57 Aligned_cols=134 Identities=9% Similarity=0.003 Sum_probs=108.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC-CcchHHHH
Q 043144 115 DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAP-DVVTYNTI 192 (580)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 192 (580)
.+.+...+..|+....+.|.+++|..+++.+.+.. |.+......++..+.+.+++++|+..+++. ...| +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 56667888888888889999999999999888875 556677788888888899999999998887 3334 45567778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144 193 LRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK 250 (580)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 250 (580)
..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888999999999999988743 334778888888888899999999999888765
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=5.4e-06 Score=67.77 Aligned_cols=99 Identities=21% Similarity=0.128 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144 467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI 546 (580)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
.....+...+...|++++|.+.|+.+...++. +...+..+..++...|++++|...+++..+.+ +.+...+..++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33444555566666666666666666554432 55566666666666666666666666665543 44556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 043144 547 AYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~g~ 567 (580)
...|++++|...+++..+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhcc
Confidence 666666666666666666553
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00016 Score=62.31 Aligned_cols=200 Identities=17% Similarity=0.130 Sum_probs=147.0
Q ss_pred hcCChHHHHHHHHHHHHc---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144 303 STGRWMDAERLLAEMVLK---G-CSPSVV-TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM 377 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (580)
...+.++..+++.+++.. | ..++.. .+..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 457789999999888753 3 334443 4555666667789999999999998776 332333333333445568999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144 378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEM 457 (580)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 457 (580)
++|+++|+.+++.++. |..++..-+...-..|+--+|++-+....+.. ..|...|..+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987633 66677777777788888889998888887754 578999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 458 RTKGLKPDTITYSSLVGGLSREG---KVDEAIKLFHDLERLGVRPNVITYNSI 507 (580)
Q Consensus 458 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 507 (580)
+-.. +-++..+..+...+...| +++.+.++|.+..+..++ +...+..+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI 231 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGI 231 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHH
Confidence 8753 334455566666554443 678899999999887543 44444433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=1.2e-05 Score=75.83 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=92.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG 168 (580)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 168 (580)
-..-.+...|++++|+..++.++.. .|.|...+......+.+.++..+|.+.++++.... |.....+..+..+|.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcC
Confidence 3344555667777777777776655 45566666666677777777777777777777664 333556666777777777
Q ss_pred ChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 043144 169 EIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDE 246 (580)
Q Consensus 169 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (580)
++.+|+.+++.. ..+.|+..|..|.++|...|+..++....- ..|...|++++|...+..
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMR 450 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHH
Confidence 777777777665 445566777777777777777666655432 334455777777777766
Q ss_pred HHHc
Q 043144 247 MRNK 250 (580)
Q Consensus 247 ~~~~ 250 (580)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 6654
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00012 Score=69.21 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHH
Q 043144 372 CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-LITYNTVIDGLSKVGKTEQA 450 (580)
Q Consensus 372 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 450 (580)
...|++++|+..+..++...+ -|++.+....+.+.+.++..+|.+.++.+.... |+ ....-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHH
Confidence 344555555555555444321 133344444444555555555555555554443 22 33344444455555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA 485 (580)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 485 (580)
..+++...... +-|+..|..|..+|...|+..++
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence 55555444432 33444555555555555544433
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=6.6e-06 Score=67.23 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=68.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCC
Q 043144 107 LESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAP 184 (580)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~ 184 (580)
+++++.. .|.+......++..+...|++++|...|+.+...+ +.+...+..++..+...|++++|...+++. ..+.
T Consensus 6 ~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 6 LKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444443 22334455566666777777777777777776655 456666667777777777777777777666 2233
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
+...+..+...+...|++++|...|+..++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45566666667777777777777777666643
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=3.9e-07 Score=52.98 Aligned_cols=30 Identities=43% Similarity=0.934 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144 462 LKPDTITYSSLVGGLSREGKVDEAIKLFHD 491 (580)
Q Consensus 462 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (580)
+.||..||+.|+.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444433
No 139
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=0.0012 Score=65.17 Aligned_cols=205 Identities=10% Similarity=0.084 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHH----------hcCChhHHHHHHHHHHhCCCCCC
Q 043144 151 VPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLC----------DSGKLNLAMEVLHKQLEKECYPD 220 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~~~ 220 (580)
.|.+..|..|.......-+++.|...|-+.+.-+.......|..... --|++++|.++|-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 57778888777777777777788777777643333322222222222 2467777777776654432
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 043144 221 VITYTILIEATCKESGVGQAMKLLDEMRNK-GCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR 299 (580)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 299 (580)
..|..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ....+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 3456666777776666665432110 0001134677777777777788888888766542 123455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043144 300 SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDR 379 (580)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (580)
++....++++-+.+.+.+ +.+....-.+.+++.+.|.-++|.+.|-+-.. + ...+..|...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHHHHH
Confidence 566666665555444433 44556677788888888888888877644321 1 234566777777777
Q ss_pred HHHHHHHH
Q 043144 380 AIEYLEIM 387 (580)
Q Consensus 380 A~~~~~~~ 387 (580)
|.++-+..
T Consensus 897 avelaq~~ 904 (1189)
T KOG2041|consen 897 AVELAQRF 904 (1189)
T ss_pred HHHHHHhc
Confidence 77765543
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.4e-05 Score=64.57 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD---IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD--VITYNVL 160 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 160 (580)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......++ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4777778877788777652 223 23344566777788888888888888887652232 2344556
Q ss_pred HHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043144 161 ISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQ 212 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 212 (580)
...+...|++++|+..++.. +.......+...+.++.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888888765 22334455667777788888888888777654
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=3.7e-05 Score=63.41 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD---TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--VITYNSIM 508 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 508 (580)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3777788888888887753 222 22334455677888888888888888887653333 23445677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
..+...|++++|+..++..... ...+..+...+++|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888888999998888664332 334556777888888999999998888765
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=3.3e-05 Score=73.73 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144 400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479 (580)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 479 (580)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++++.+... +-+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334444444455555555555555443 22 22234444444445555555555554432 22344444444444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
++++.|+.+.+++.+..+. +..+|..|+.+|...|+++.|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555443322 34455555555555555555554444443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=6.2e-05 Score=71.88 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=104.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDG 440 (580)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 440 (580)
......++..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|.+++++..... +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445666777777899999999999998873 554 4457777888888999999999988655 4456777777788
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144 441 LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL 495 (580)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (580)
+...++++.|+.+.+++.... +-+-.+|..|..+|...|+++.|+-.+..+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 899999999999999999863 335569999999999999999999999887543
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=4.9e-06 Score=61.21 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144 479 EGKVDEAIKLFHDLERLGVR-PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD 557 (580)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
.|+++.|+.+++++.+..+. ++...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 47788888888888765442 2455566678888888888888888877 3221 2234555666788888888888888
Q ss_pred HHHH
Q 043144 558 LLNQ 561 (580)
Q Consensus 558 ~~~~ 561 (580)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.12 E-value=0.00011 Score=59.35 Aligned_cols=92 Identities=11% Similarity=-0.091 Sum_probs=50.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144 472 LVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL 551 (580)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+...+...|++++|.++|+-+....+. +..-|..|.-++...|++++|+..|..+.... +.++..+..++.++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445555666666665555544433 44455555555555556666666665555443 4445555555555566666
Q ss_pred HHHHHHHHHHHHhC
Q 043144 552 AKEALDLLNQLCSR 565 (580)
Q Consensus 552 ~~~A~~~~~~~~~~ 565 (580)
.+.|++.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555544
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=6.9e-05 Score=56.58 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY 548 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777776654332 34556666667777777777777777766553 4444566677777777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 043144 549 EGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 549 ~g~~~~A~~~~~~~~~~g 566 (580)
.|+++.|...+++..+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777766543
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0012 Score=61.22 Aligned_cols=229 Identities=17% Similarity=0.083 Sum_probs=130.0
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H
Q 043144 327 VTFNIL-INFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNT---L 402 (580)
Q Consensus 327 ~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---l 402 (580)
..+..+ ..++.-.|+.++|.++--.+++.... +......-..++...++.+.|...|++.+.. .|+...-.. .
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhh
Confidence 344333 24556688888888887777766322 2222222234555678889999999988876 455442222 2
Q ss_pred HHH----------HHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-
Q 043144 403 LTA----------LCKDGKVDVAVEILNQLSNKH---CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT- 468 (580)
Q Consensus 403 i~~----------~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~- 468 (580)
... ..+.|++..|.+.+.+....+ ..++...|........+.|+..+|+.--++..+.+ +..+
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syik 322 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIK 322 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHH
Confidence 211 346788888888888877654 33555667777777778888888888887776542 1222
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144 469 -YSSLVGGLSREGKVDEAIKLFHDLERLGVRP-NVITYNSIMLGLCKARQ--TYRAIDILADMVTRSCKPTEATYTILIE 544 (580)
Q Consensus 469 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
|..-..++...+.|++|.+-+++..+....+ ...++.....++-+.++ +-..+.+-+ .....+....|..+.-
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~---~as~~eikkayrk~AL 399 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISR---NASDDEIKKAYRKLAL 399 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhh---hcccchhhhHHHHHHH
Confidence 2222334556677888888888876543222 22333333333333222 222222222 2223455566665544
Q ss_pred HH---HhcCCHHHHHHHHHHHHh
Q 043144 545 GI---AYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 545 ~~---~~~g~~~~A~~~~~~~~~ 564 (580)
.+ ...|.-.+|...|+.+-+
T Consensus 400 ~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 400 VHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred HhCCCcCcchhHHHHHHHHHHHH
Confidence 44 345555677777766543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=6.8e-05 Score=56.61 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (580)
+..+...+...|++++|+..++++... .+.+...+..+...+...|++++|.+.|+...... +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666666777777777666654 23333555666666666666666666666666554 3344555566666666
Q ss_pred cCChhHHHHHHHHc
Q 043144 167 LGEIDNALQVLERM 180 (580)
Q Consensus 167 ~g~~~~A~~~~~~~ 180 (580)
.|++++|...+.+.
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666666554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00021 Score=56.76 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVR-P-NVITYNSIMLGLCKARQTYRAIDILADMVTRSC--KPTEATYTILI 543 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 543 (580)
++..++..+.+.|++++|...|..+.+..+. + ....+..++.++...|++++|...++++....- +....++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666667777777777776653322 1 133455566667777777777777777665421 11245566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 544 EGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
.++...|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777776653
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00017 Score=69.33 Aligned_cols=92 Identities=12% Similarity=-0.030 Sum_probs=78.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 437 VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ 516 (580)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 516 (580)
-...+...|++++|+.+|+++++.. +.+...|..+..+|...|++++|+..++++.+..+. +...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455678899999999999999874 346778888889999999999999999999887654 67788889999999999
Q ss_pred HHHHHHHHHHHHHc
Q 043144 517 TYRAIDILADMVTR 530 (580)
Q Consensus 517 ~~~A~~~~~~~~~~ 530 (580)
+++|+..++++++.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0055 Score=56.96 Aligned_cols=274 Identities=12% Similarity=-0.001 Sum_probs=150.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG 168 (580)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 168 (580)
.....+.+...+.+|+..+..++.. .|.+...|..-+..+...|++++|.--.+.-+... +-.+..+.....++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDM-CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHh-CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3455677777788888888888776 33445555555556666777777665554444332 222334444555555555
Q ss_pred ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHH-HHHHhcCCHhHHHHHHHH
Q 043144 169 EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC-YPDVITYTILI-EATCKESGVGQAMKLLDE 246 (580)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A~~~~~~ 246 (580)
+..+|.+.++.- ..+ ....|+..++....... +|....+..+- .++.-.|++++|.++--.
T Consensus 132 ~~i~A~~~~~~~------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 132 DLIEAEEKLKSK------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHHHHhhhh------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 555555555421 000 01112222222222111 12233333332 334456777777777666
Q ss_pred HHHcCCCCCHhHHHHHHH--HHHhcCCHHHHHHHHHHhhhCCCCCCHHH-------------HHHHHHHHHhcCChHHHH
Q 043144 247 MRNKGCIPDVVTYNVLVN--GICKEGRLDEAIKFLNDMPSYGCQPNVIT-------------HNIILRSMCSTGRWMDAE 311 (580)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~ 311 (580)
+++.. ....+..+++ ++.-.++.+.|...|++....+ |+... +..-..-..+.|.+..|.
T Consensus 195 ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 66542 1122222222 3344667777777777766542 32211 112223355778888888
Q ss_pred HHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHH
Q 043144 312 RLLAEMVLKG---CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY---NPVLHGFCKEKKMDRAIEYLE 385 (580)
Q Consensus 312 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~ 385 (580)
+.|.+.+..+ ..++...|........+.|+..+|+.-.+...+. |+.-. ..-..++...++|++|.+-|+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887652 3344455666666677788888888888877765 33322 222355666778888888888
Q ss_pred HHHHC
Q 043144 386 IMVSR 390 (580)
Q Consensus 386 ~~~~~ 390 (580)
+..+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 77765
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=0.02 Score=56.91 Aligned_cols=73 Identities=18% Similarity=0.087 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----------HHhcC
Q 043144 99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG----------YCRLG 168 (580)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g 168 (580)
-.++|.++.+ ..|.++.|..++......-.++.|...|-+... .+....-..|... -+--|
T Consensus 678 gledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred chHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 3455555544 357888888888887777777778777765443 2222111111111 11246
Q ss_pred ChhHHHHHHHHc
Q 043144 169 EIDNALQVLERM 180 (580)
Q Consensus 169 ~~~~A~~~~~~~ 180 (580)
++++|.++|-.+
T Consensus 749 ~feeaek~yld~ 760 (1189)
T KOG2041|consen 749 EFEEAEKLYLDA 760 (1189)
T ss_pred chhHhhhhhhcc
Confidence 777777777666
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.0002 Score=57.89 Aligned_cols=97 Identities=8% Similarity=-0.049 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHH
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRT 195 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 195 (580)
+......+...+...|++++|..+|+.+...+ +.+..-|..|+.++-..|++++|+..|... -.+.|+..+..++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34455566667788888888888888888776 667777788888888888888888888887 224567778888888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 043144 196 LCDSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~ 215 (580)
+.+.|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877654
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00017 Score=69.33 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL 167 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (580)
......+...|++++|+..|++++.. .+.+...|..+..+|.+.|++++|+..+++++... +.+...|..++.+|...
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 34456777888888898888888876 45567778888888888888888888888888876 56777888888888888
Q ss_pred CChhHHHHHHHHc-CCCCCcc
Q 043144 168 GEIDNALQVLERM-SVAPDVV 187 (580)
Q Consensus 168 g~~~~A~~~~~~~-~~~~~~~ 187 (580)
|++++|+..|+++ ...|+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 8888888888887 4444433
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.95 E-value=0.018 Score=54.37 Aligned_cols=431 Identities=14% Similarity=0.156 Sum_probs=211.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIP-----DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG--YC 165 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 165 (580)
.+.+++++.+|.++|.+..+..... .....+.++++|... +.+.....+....+.- +... |..|..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~-~~s~--~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF-GKSA--YLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc-CCch--HHHHHHHHHHH
Confidence 4567899999999999987762211 123345667776643 4555555555554432 2222 3333333 34
Q ss_pred hcCChhHHHHHHHHc-----CCC------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChhhH
Q 043144 166 RLGEIDNALQVLERM-----SVA------------PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE----CYPDVITY 224 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-----~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 224 (580)
+.+++.+|++.+... +.. +|...-+..+..+...|++.+++.+++++...- ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 688999999887765 111 111122455677889999999999988887653 33678888
Q ss_pred HHHHHHHHhcC--------CHhHHHHHH-------HHHHHc------CCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHH
Q 043144 225 TILIEATCKES--------GVGQAMKLL-------DEMRNK------GCIPDVVTYNVLVNGICKE--GRLDEAIKFLND 281 (580)
Q Consensus 225 ~~li~~~~~~g--------~~~~A~~~~-------~~~~~~------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 281 (580)
+.++-.+.+.- ..+-+...| +++... .+.|.......++....-. .+..--.+++..
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 87665554321 111111111 111111 1122222222222221111 111112222222
Q ss_pred hhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 282 MPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAEMVLKGCS----PSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 356 (580)
Q Consensus 282 ~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 356 (580)
....-+.|+.. ....+...+.. +.+++..+-+.+....+. .=..+|..++....+.++...|.+.+.-+.-.
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 22222344422 12222222222 444444443333322110 12346777777777888888888777666554
Q ss_pred CCCCHhhH-------HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHHHhcCC-hHHHHHHHH
Q 043144 357 CTPNSLSY-------NPVLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIV-TYNTLL---TALCKDGK-VDVAVEILN 420 (580)
Q Consensus 357 ~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li---~~~~~~g~-~~~A~~~~~ 420 (580)
+|+...- ..+.+..+. .-+...-+.+|+.....++ |.. ....|+ .-+-+.|. -++|+++++
T Consensus 328 -dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 328 -DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred -CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 2222211 111122221 1122233455555544422 221 111222 22344444 677777777
Q ss_pred HHHhCCCCCCHHHHHH----HHHHHHh---CCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhCCCHHHHHH
Q 043144 421 QLSNKHCSPVLITYNT----VIDGLSK---VGKTEQAMKLLEEMRTKGLKPD----TITYSSLVGG--LSREGKVDEAIK 487 (580)
Q Consensus 421 ~~~~~~~~~~~~~~~~----l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~ 487 (580)
.+.+-. +-|...-|. +-..|.+ ...+..-+.+-+-+.+.|+.|- ...-|.|.+| +...|++.++.-
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 776543 223322222 2222322 2223333333333444565542 3344555444 456777777766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043144 488 LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTI 541 (580)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 541 (580)
.-.-+.+ +.|++.+|..++-+....+++++|++++..+ ||+..++..
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 5555544 4567778877777777777888888877664 556555543
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00078 Score=60.27 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 043144 463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR---QTYRAIDILADMVTRSCKPTEATY 539 (580)
Q Consensus 463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 539 (580)
+-|...|..|..+|...|+++.|...|.+..+..++ +...+..+..++..+. ...++..++++++... +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 346667777777777777777777777777665433 5666666666554432 3566677777777653 5556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHH
Q 043144 540 TILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAE 574 (580)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 574 (580)
..|...+...|++.+|...|+.|.+..+..++...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 66777777777777777777777777655554443
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.93 E-value=0.0036 Score=56.40 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV--TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK- 443 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 443 (580)
....+...|++++|+..|+++....+.+... ....++.++.+.+++++|...++++.+..+.....-|.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3444455666666666666666543322111 1234455566666666666666666655422212222222222211
Q ss_pred -C---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043144 444 -V---------------GK---TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITY 504 (580)
Q Consensus 444 -~---------------g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 504 (580)
. .+ ..+|+..|+++++. -|+. .-.++|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 23455555555544 2332 2345555544444321 01111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 505 NSIMLGLCKARQTYRAIDILADMVTR--SCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..++.-|.+.|.+..|+.-++.+++. +.+..+.....++.+|...|..++|.++...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 25667788999999999999999976 2234467788889999999999999998877653
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00014 Score=64.54 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=52.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDN 172 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 172 (580)
-+.++++|++|+..|.+++.. .|.|.+.|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 344555666666666666555 44455555555555666666666665555555544 3344455566666666666666
Q ss_pred HHHHHHHc-CCCCCcchH
Q 043144 173 ALQVLERM-SVAPDVVTY 189 (580)
Q Consensus 173 A~~~~~~~-~~~~~~~~~ 189 (580)
|++.|++. .+.|+-.+|
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 66665555 444544443
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.93 E-value=1.5e-05 Score=58.61 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=48.7
Q ss_pred cCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043144 97 NGELEEGFKFLESMVYHGDI-PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ 175 (580)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 175 (580)
+|+++.|+.+|++++..... ++...+..++.+|.+.|++++|..+++. .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777665321 1344455567777777777777777766 3222 2233444455677777777777777
Q ss_pred HHHH
Q 043144 176 VLER 179 (580)
Q Consensus 176 ~~~~ 179 (580)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.88 E-value=0.00014 Score=66.85 Aligned_cols=264 Identities=15% Similarity=0.039 Sum_probs=161.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHH--HhC--CC-CCCHHHHHHHHH
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIV--EDS--GA-VPDVITYNVLIS 162 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~--~~-~~~~~~~~~l~~ 162 (580)
.+.+++.|+......+|+.+++.|+.. -..+|..+.++|.-.+++++|++....= ..+ |- .-...+...|+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 467899999999999999999987532 1356888999999999999999875421 111 10 112333445666
Q ss_pred HHHhcCChhHHHHHHHH-c------CC-CCCcchHHHHHHHHHhcCC--------------------hhHHHHHHHHHHh
Q 043144 163 GYCRLGEIDNALQVLER-M------SV-APDVVTYNTILRTLCDSGK--------------------LNLAMEVLHKQLE 214 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~-~------~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~ 214 (580)
.+--.|.+++|+..-.+ + +. --...++..+...|...|+ ++.|.+.|.+-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 66667888888765332 2 11 1234567778888876553 2233334333221
Q ss_pred C----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH----cCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 215 K----E-CYPDVITYTILIEATCKESGVGQAMKLLDEMRN----KGCI-PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 215 ~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (580)
. | --.....|..|...|.-.|+++.|+...+.-+. .|-. .....+..+..+++-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1 1 001223455566666677888888776654322 2211 1234566777888888888888887776432
Q ss_pred ----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 285 ----YG-CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLK-----GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK 354 (580)
Q Consensus 285 ----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (580)
.| -......+.++...|.-..++++|+.++..-+.. +..-....+-+|..+|...|..++|....+.-++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 1233455667777777777888888777654322 1112344566777778778888877766655443
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.00081 Score=62.55 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYH----GDIPDI-IPCTSLIRGFCKVGKTRKATRVMEIVE 146 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (580)
.|......|...|++++|...|.++... +.+.+. ..|.....+| +.+++++|...+++..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Confidence 5677777888888888888888776432 111111 2233333333 3336666666665543
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00078 Score=53.37 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK--PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIM 508 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 508 (580)
++...+..+...|++++|.+.|+.+...... .....+..+..++...|++++|...|+.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777777654211 113345556777777777777777777776543221 244566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043144 509 LGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777765
No 163
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3.2e-05 Score=45.62 Aligned_cols=33 Identities=55% Similarity=1.014 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD 465 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 465 (580)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 164
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.5e-05 Score=46.09 Aligned_cols=33 Identities=42% Similarity=0.991 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN 290 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 290 (580)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 165
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=4.5e-05 Score=44.61 Aligned_cols=32 Identities=38% Similarity=0.820 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP 464 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 464 (580)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.78 E-value=0.00059 Score=57.99 Aligned_cols=80 Identities=11% Similarity=-0.104 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIP--DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
..+..+...+...|++++|+..|++++.....+ ...++..+...+...|++++|...++...... +....++..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 356666777777788888888888876553222 23467777777788888888888887777654 344455566666
Q ss_pred HHH
Q 043144 163 GYC 165 (580)
Q Consensus 163 ~~~ 165 (580)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 665
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00045 Score=63.91 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK-VGKTRKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
..|..+++...+.+..+.|..+|.++...+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777888888888888888888887542 2234455555555334 56666688888888775 36677788888888
Q ss_pred HHhcCChhHHHHHHHHc-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144 164 YCRLGEIDNALQVLERM-SVAPDV----VTYNTILRTLCDSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (580)
+...|+.+.|+.+|++. ..-+.. ..|...+..-.+.|+.+...++..++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887 222222 35666666666667776666666666553
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00024 Score=65.65 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR-LGEIDNALQVLERM--SVAPDVVTYNTILRTL 196 (580)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 196 (580)
.+|..+++...+.+..+.|+.+|.+..+.+ ..+..+|......-.. .++.+.|..+|+.. ..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467777888888888888888888887543 3344455554444333 56666688888887 4556677788888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144 197 CDSGKLNLAMEVLHKQLEKECYPDV---ITYTILIEATCKESGVGQAMKLLDEMRNK 250 (580)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 250 (580)
...++.+.|..+|++.+.. ++++. ..|...+..-.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888765 22222 37777777777788888888887777765
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00034 Score=62.09 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=81.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY 518 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 518 (580)
.-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34567899999999999999864 346777788888999999999999999998876544 5778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 519 RAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 519 ~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
+|++.|++.++- .|+-.+|..=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 999999999864 66666654433
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0071 Score=56.25 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----CC
Q 043144 433 TYNTVIDGLSKV-GKTEQAMKLLEEMRTK----GLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-----PN 500 (580)
Q Consensus 433 ~~~~l~~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~ 500 (580)
.+..+...|... |++++|++.|++..+. + .+. ...+..++..+.+.|++++|.++|+++...... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344555667676 8888888888887543 2 111 334566777888889999999999888754322 12
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 501 VI-TYNSIMLGLCKARQTYRAIDILADMVTR--SCKPT--EATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 501 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
.. .|...+-++...|++..|.+.+++.... ++..+ ......|+.+| ..|+.+...+.+...-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHc
Confidence 22 3344455677788888888888887644 22223 23444455544 4566666555555443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.0022 Score=54.70 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL 511 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (580)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++.+..+. +...+..+..+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33444444445555555555555443321111 234444455555555555555555555443322 333444444444
Q ss_pred HhcCC
Q 043144 512 CKARQ 516 (580)
Q Consensus 512 ~~~g~ 516 (580)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0013 Score=56.02 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
...+..+...+...|++++|...|+++.+..+.++ ...+..++.++.+.|++++|...+++++... +.+...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34577788888999999999999999986544432 4678889999999999999999999999763 55677788888
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHHhCCCC
Q 043144 544 EGIAYEGL--------------AKEALDLLNQLCSRGVV 568 (580)
Q Consensus 544 ~~~~~~g~--------------~~~A~~~~~~~~~~g~~ 568 (580)
.++...|+ +++|.+++++....++.
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 88888887 57788888887776543
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.0015 Score=55.57 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 470 SSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
..++..+...|++++|...|+++......+ ...++..+..+|...|++++|+..+++++.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444444322111 112344444444444555555554444443
No 174
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=5.6e-05 Score=44.20 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ 288 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 288 (580)
+|+.++.+|.+.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00014 Score=50.27 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 507 IMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
++..+...|++++|.+.|+++++.. +.+...|..++.++...|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455666677777777777776553 4456666677777777777777777777666544
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.013 Score=48.20 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CChhhHHHH
Q 043144 152 PDVITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY-PDVITYTIL 227 (580)
Q Consensus 152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 227 (580)
|++.-...|..+..+.|+..+|...|++. ....|....-.+.++....+++..|...++.+.+.+.. .+......+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445555555666666666666554 22334444555555555566666666665555554310 112233444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144 228 IEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK 277 (580)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (580)
.+.+...|.+.+|+..|+..... -|+...-......+.++|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55555666666666666666554 2333333333344455555554443
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.0014 Score=51.18 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPD--IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAV--PDVITYNVLIS 162 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 162 (580)
.-.+...+-..|+.++|+.+|++++..|...+ ...+..+...+...|++++|..+++......+. .+......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34566788888999999999999988876554 356777888889999999999999888765311 12233333445
Q ss_pred HHHhcCChhHHHHHHHHc
Q 043144 163 GYCRLGEIDNALQVLERM 180 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~ 180 (580)
++...|+.++|++.+-..
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 667788888888887654
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.00098 Score=64.12 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=97.6
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144 356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT 433 (580)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 433 (580)
+.+.+......+++.+....+.+.+..++.+..... ...-..|..+++..|.+.|..+.++.++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344467777788888888888888888888877642 222234567889999999999999999998888899999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 479 (580)
+|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666777776666666655
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00023 Score=49.89 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 043144 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG-LAKEALDLLNQLCSR 565 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 565 (580)
+...|..++..+...|++++|+..|++.++.. +.+...|..++.++...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556666666666666666666666666653 445556666666666666 566666666666553
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00082 Score=64.65 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=104.5
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043144 320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH--GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV 397 (580)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 397 (580)
.+.+.+......+++.+....+++.+..++-+.... ....-+.+..+++..|.+.|..+.++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667777888888888888899999998887765 222334566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV 444 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 444 (580)
+++.|++.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988777667777777766666555
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.019 Score=51.79 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=23.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTK--GLKPDTITYSSLVGGLSREGKVDEAIKLFH 490 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (580)
...|.+.|.+..|..-++.+++. +.+.....+..+..+|...|..++|.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33344455555555555554443 111223333444444444554444444433
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0064 Score=61.21 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
..|..+.......|++++|...++++...+ |+...|..++.++...|+.++|.+.++++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444455555555555555443 3444555555555555555555555555543
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.59 E-value=0.00031 Score=48.52 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSG 149 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 149 (580)
+...+...|++++|+..|++++... |.+...+..+..++...|++++|..+|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4456667777777777777777663 4456667777777777777777777777776553
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.58 E-value=0.00022 Score=49.88 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=34.4
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSG 149 (580)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 149 (580)
...|++++|+++|++++.. .|.+..++..++.+|.+.|++++|..+++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566677777777776665 34455666666667777777777777776666653
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.032 Score=46.08 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=115.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK 446 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 446 (580)
+..+..+.=|++...+-..+-.. ..|++..-..|..+....|+..+|...|++...--...|......+..+....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 33344444455544433332222 3577777788888899999999999999988876566778888888888888999
Q ss_pred HHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144 447 TEQAMKLLEEMRTKG---LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDI 523 (580)
Q Consensus 447 ~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 523 (580)
+..|...++++.+.+ -.|| +...+...+...|.+++|+..|+.+...-+.|....| ....+.++|+.++|...
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHH
Confidence 999999999887653 2233 4455778888999999999999998876544444443 44456788888888777
Q ss_pred HHHHHHcCCCCCHHHHH
Q 043144 524 LADMVTRSCKPTEATYT 540 (580)
Q Consensus 524 ~~~~~~~~~~~~~~~~~ 540 (580)
+....+. ...+...|.
T Consensus 216 ~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 216 YVAVVDT-AKRSRPHYR 231 (251)
T ss_pred HHHHHHH-HHhcchhHH
Confidence 7666544 233444454
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0042 Score=55.73 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHH
Q 043144 151 VPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDS---GKLNLAMEVLHKQLEKECYPDVITYT 225 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (580)
|.|...|-.|+..|...|+++.|..-|.+. . .+++...+..+..++... ....++..+|++++..+ +.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 667778888888888888888888877776 2 234555566666655432 23456777777777764 33566666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 043144 226 ILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN 264 (580)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 264 (580)
.|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 67777778888888888888887763 33334444444
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.55 E-value=0.0027 Score=57.60 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKP---TEATYTILI 543 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 543 (580)
|........+.|++++|...|+.+.+..+... ...+..++.+|...|++++|...|+.+++. ++. .+..+..++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHH
Confidence 44444334556777777777777765443311 245566777777777777777777777754 122 245566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144 544 EGIAYEGLAKEALDLLNQLCSRGVV 568 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~g~~ 568 (580)
.++...|++++|.++++++++..+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6777777777777777777766543
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.54 E-value=0.0015 Score=60.37 Aligned_cols=280 Identities=16% Similarity=0.123 Sum_probs=137.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH-------cCCC-CCcchHHHHHH
Q 043144 127 RGFCKVGKTRKATRVMEIVEDSGAVPDV----ITYNVLISGYCRLGEIDNALQVLER-------MSVA-PDVVTYNTILR 194 (580)
Q Consensus 127 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-~~~~~~~~l~~ 194 (580)
.-+++.|+.......|+..++.| ..|. .+|..|+.+|.-.+++++|+++... ++.. -...+...|+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34789999999999999999988 3343 3566788888888999999987432 1211 12334445666
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 043144 195 TLCDSGKLNLAMEVLHKQLEK----EC-YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE 269 (580)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (580)
.+--.|.+++|+....+-+.. |- ......+..+...|...|+--.... -.+.|-.++.+ -
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev-~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEV-T---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHH-H----------
Confidence 666677777776554432221 10 0122334444444443332100000 00000000000 0
Q ss_pred CCHHHHHHHHHH----hhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhc
Q 043144 270 GRLDEAIKFLND----MPSYGC-QPNVITHNIILRSMCSTGRWMDAERLLAEMVLK----GCS-PSVVTFNILINFLCRK 339 (580)
Q Consensus 270 g~~~~A~~~~~~----~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 339 (580)
..++.|.++|.+ +.+.|- -.--..|..+...|.-.|+++.|+...+.-++. |-. .....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 001122222211 111110 001123444555555566666666655443221 211 1123455566666666
Q ss_pred CCHHHHHHHHHHhhhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhc
Q 043144 340 GLLGRAIDILEKMPKH----G-CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVS----RG-CYPDIVTYNTLLTALCKD 409 (580)
Q Consensus 340 g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~ 409 (580)
|+++.|.+.|+..... | -.....+..+|.+.|.-..++++|+.++.+-+. .+ ..-....+-+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 7777766666543321 1 112334455566666666666666666654321 10 111234556666666666
Q ss_pred CChHHHHHHHHHH
Q 043144 410 GKVDVAVEILNQL 422 (580)
Q Consensus 410 g~~~~A~~~~~~~ 422 (580)
|..++|+.+.+..
T Consensus 329 g~h~kAl~fae~h 341 (639)
T KOG1130|consen 329 GEHRKALYFAELH 341 (639)
T ss_pred hhHHHHHHHHHHH
Confidence 6666666655543
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.004 Score=48.60 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 043144 437 VIDGLSKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLC 512 (580)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 512 (580)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.....+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777665433 2345556667777777777777777776532221 1122223334566
Q ss_pred hcCCHHHHHHHHHHHH
Q 043144 513 KARQTYRAIDILADMV 528 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~ 528 (580)
..|+.++|++.+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6777777777766555
No 190
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.54 E-value=0.11 Score=51.31 Aligned_cols=406 Identities=11% Similarity=0.044 Sum_probs=208.3
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..|..++..-......+.+...+..++.. .|---.-|...+.--.+.|..+.+..+|++.+. +++.++..|..+...+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 35666665555555556677777777765 333345677777777899999999999999886 4578888888877766
Q ss_pred Hh-cCChhHHHHHHHHc----CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hc-
Q 043144 165 CR-LGEIDNALQVLERM----SVA-PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC---KE- 234 (580)
Q Consensus 165 ~~-~g~~~~A~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~- 234 (580)
.. .|+.+.....|+++ |.. .....|...|..-..++++.....+|++.++.. ...++..-.-|. ..
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcC
Confidence 55 68888888899987 322 345678899998889999999999999988752 112222221111 11
Q ss_pred -----CCHhHHHHHHHHHHHc---C-CCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 043144 235 -----SGVGQAMKLLDEMRNK---G-CIPDVVTYNVLVNGIC-KEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST 304 (580)
Q Consensus 235 -----g~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 304 (580)
...+++.++-...... . ..+....+..-+.--. ..+..+++.....+.. ...-..+-..
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s 268 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKS 268 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhh
Confidence 1222222222211110 0 0000001110000000 0011111111111100 0000111112
Q ss_pred CChHHHHHHHHHHHHcC---C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144 305 GRWMDAERLLAEMVLKG---C----SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM 377 (580)
Q Consensus 305 ~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (580)
-.+.+....|+.-.+.. + .++..+|..-+..-...|+.+.+.-+|++..-. +..-...|-..+......|+.
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCch
Confidence 22222333333333221 1 123456666677777777777777777766532 111223344444444445777
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHH--
Q 043144 378 DRAIEYLEIMVSRGCY--PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMK-- 452 (580)
Q Consensus 378 ~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~-- 452 (580)
+-|..++....+-..+ |....+.+. ..-..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+..
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 7776666555443222 222222222 2334567788888887777654 332 222222334456666666662
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 453 -LLEEMRTKGLKPDTITYSSLVG-----GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR 515 (580)
Q Consensus 453 -~~~~m~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 515 (580)
++..... | .-+..+...+.- .+.-.++.+.|..++.++.+.- .++...|..++......+
T Consensus 424 ~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 424 ELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 2222221 1 112222222222 2234567777777777777643 335666666666555444
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0057 Score=61.58 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=42.6
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY 285 (580)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (580)
+...+..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.|++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555555555556677777777777777663 46666777777777777777777777776654
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.50 E-value=0.015 Score=51.00 Aligned_cols=172 Identities=19% Similarity=0.106 Sum_probs=88.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYP--DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS 442 (580)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (580)
-.....+...|++++|+..|+.+....+.. -......++.++.+.|+++.|...++++.+..+.....-+.....+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 334445555666666666666666542221 112445556666666666666666666655442111111211111111
Q ss_pred h-------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 443 K-------------VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIML 509 (580)
Q Consensus 443 ~-------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 509 (580)
. .+...+|...|+. ++.-|-......+|...+..+.+. =...-..++.
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 1 1112233333333 444444455556666665555421 0111223567
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043144 510 GLCKARQTYRAIDILADMVTRSCKPT---EATYTILIEGIAYEGLAKEAL 556 (580)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 556 (580)
.|.+.|.+..|..-++.+++. .+.+ ...+..++.+|.+.|..+.|.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 788899999999999998876 3333 356777888888888887544
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00033 Score=48.92 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=43.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHH
Q 043144 130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYN 190 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 190 (580)
.+.|++++|.+.|+.+.... |.+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 56788888888888887776 557777778888888888888888888887 4445533333
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.46 E-value=0.11 Score=49.45 Aligned_cols=424 Identities=13% Similarity=0.132 Sum_probs=232.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHH--HHhc
Q 043144 129 FCKVGKTRKATRVMEIVEDSGAVPDV------ITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRT--LCDS 199 (580)
Q Consensus 129 ~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~--~~~~ 199 (580)
+.+++++.+|..+|.++.+.. ..++ ...+.++++|... +.+.-...+... ...| ...|..+..+ +.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 568899999999999998753 2232 2334567777543 333333333333 2223 3334444443 4578
Q ss_pred CChhHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCHhHHHH
Q 043144 200 GKLNLAMEVLHKQLEK--ECYP------------DVITYTILIEATCKESGVGQAMKLLDEMRNK----GCIPDVVTYNV 261 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 261 (580)
+.+++|.+.+..-... +..| |...-+..+..+...|.+.+++.+++++... ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 9999999888766544 2111 1222234567788899999999999888754 33467888887
Q ss_pred HHHHHHhc--------CC-------HHHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Q 043144 262 LVNGICKE--------GR-------LDEAIKFLNDMPSY------GCQPNVITHNIILRSMCST--GRWMDAERLLAEMV 318 (580)
Q Consensus 262 l~~~~~~~--------g~-------~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~ 318 (580)
++-.+.+. .. ++.+.-+..+|... .+-|.......++....-. .+..--.++++...
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 55444332 11 12222222222211 1122222222222221111 11112223333332
Q ss_pred HcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043144 319 LKGCSPSVV-TFNILINFLCRKGLLGRAIDILEKMPKHGCTP----NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY 393 (580)
Q Consensus 319 ~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 393 (580)
..-+.|+.. +...+..-+.. +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-+... .
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--d 328 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--D 328 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--C
Confidence 222333322 23334444433 5666666666554432111 2346777888888899999999988877654 3
Q ss_pred CCHHHHHH-------HHHHHH----hcCChHHHHHHHHHHHhCCCCCC-HHHH-HHHHHHHHhCCC-HHHHHHHHHHHHH
Q 043144 394 PDIVTYNT-------LLTALC----KDGKVDVAVEILNQLSNKHCSPV-LITY-NTVIDGLSKVGK-TEQAMKLLEEMRT 459 (580)
Q Consensus 394 ~~~~~~~~-------li~~~~----~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~~g~-~~~A~~~~~~m~~ 459 (580)
|+...-.. +-+..+ ...+...-+.+++.+...++... .+.| -.-+.-+-+.|. -++|+.+++...+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33332111 122222 11223444556666665553221 1111 112233455665 8899999999886
Q ss_pred CCCCCCHHHHHHHH----HHHHh---CCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 043144 460 KGLKPDTITYSSLV----GGLSR---EGKVDEAIKLFHDLERLGVRPN----VITYNSIMLG--LCKARQTYRAIDILAD 526 (580)
Q Consensus 460 ~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~ 526 (580)
-. +-|...-|.+. .+|.+ ...+.+-..+-+-+.+.|+.|- ...-|.|.+| +...|++.++.-.-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 42 23443333322 23322 2234444444444556676653 3344555554 5578999999876665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 527 MVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+.+ +.|++.+|..++-+.....++++|..++..+
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 554 5899999999999999999999999999876
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00017 Score=41.08 Aligned_cols=28 Identities=39% Similarity=0.848 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 258 TYNVLVNGICKEGRLDEAIKFLNDMPSY 285 (580)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (580)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00082 Score=47.05 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR-QTYRAIDILADMVTR 530 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 530 (580)
+..+|..+...+...|++++|+..|++..+..+. +...|..+..+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4556777777777788888888888887776544 5667777777777777 678888877777653
No 197
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00023 Score=40.47 Aligned_cols=29 Identities=45% Similarity=0.911 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKG 461 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 461 (580)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 35555555555555555555555555443
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0086 Score=52.20 Aligned_cols=133 Identities=10% Similarity=0.034 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH----
Q 043144 293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVL---- 368 (580)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 368 (580)
..+.++..+...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...|++..+..-..|....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666677778888888888888877666677788888888888888888888888766543333333333332
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144 369 -HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH 426 (580)
Q Consensus 369 -~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 426 (580)
..|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|.+.++.+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444556677777777766665433 44443333333444567777777777777655
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0027 Score=47.59 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144 227 LIEATCKESGVGQAMKLLDEMRNKGC-IPDVVTYNVLVNGICKEG--------RLDEAIKFLNDMPSYGCQPNVITHNII 297 (580)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 297 (580)
.|.-+...+++...-.+|+.+++.|+ .|++.+|+.++...++.. +.-+.+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 44445555667777777777776666 666777776666554432 233455566666666666666666666
Q ss_pred HHHHH
Q 043144 298 LRSMC 302 (580)
Q Consensus 298 l~~~~ 302 (580)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 65543
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.35 E-value=0.0028 Score=51.58 Aligned_cols=85 Identities=9% Similarity=-0.067 Sum_probs=41.1
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144 443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAID 522 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 522 (580)
..|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 4555555555555544432 123333444444555555555555555554433322 22223344445555555555555
Q ss_pred HHHHHHH
Q 043144 523 ILADMVT 529 (580)
Q Consensus 523 ~~~~~~~ 529 (580)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555553
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.34 E-value=0.13 Score=47.84 Aligned_cols=293 Identities=17% Similarity=0.137 Sum_probs=173.0
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChhh--HHH
Q 043144 258 TYNVLVNGIC--KEGRLDEAIKFLNDMPSYGCQPNVITHNIILRS--MCSTGRWMDAERLLAEMVLKGCSPSVVT--FNI 331 (580)
Q Consensus 258 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 331 (580)
.|..|-.+++ ..|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3444444443 356666676665554321 13344444444433 33468888888888888753 22211 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH-
Q 043144 332 LINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG-CYPDIV--TYNTLLTALC- 407 (580)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~li~~~~- 407 (580)
|.-.--+.|+.+.|.++-+..-..-.. -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 222233577888888777766554322 45667778888888888888888887655432 233432 2222322211
Q ss_pred --hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043144 408 --KDGKVDVAVEILNQLSNKHCSPVLI-TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE 484 (580)
Q Consensus 408 --~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 484 (580)
-..+...|...-.+..+.. |+.. .-..-..++.+.|+..++-.+++.+=+.. |.+.++. +....+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--c
Confidence 1224555666555555443 4422 22334567788899999999998887664 4444332 223345554 3
Q ss_pred HHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 043144 485 AIKLFHDLE---RLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY-EGLAKEALDLLN 560 (580)
Q Consensus 485 A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 560 (580)
++.-+++.. ...+. +......+..+-...|++..|..--+..... .|....|..|.++-.. .||-.+++.++-
T Consensus 311 a~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 ALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 333333332 22222 4566667777888889998888877776643 7888888888888754 499999999888
Q ss_pred HHHhCC
Q 043144 561 QLCSRG 566 (580)
Q Consensus 561 ~~~~~g 566 (580)
+..+.-
T Consensus 388 qav~AP 393 (531)
T COG3898 388 QAVKAP 393 (531)
T ss_pred HHhcCC
Confidence 877653
No 202
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.34 E-value=0.15 Score=48.37 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 043144 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKG-LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITY-NSIML 509 (580)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 509 (580)
.+|...+....+..-.+.|..+|-+..+.+ +.++..++++++..++ .|+...|..+|+.-... .||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345556666666677788888888888776 4567777777776554 45677788888765543 2343333 44555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 510 GLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 510 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
-+...++-+.|..+|+..+.+ +..+ ...|..+++--..-|+...+..+=+++.+.-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 667778888888888876654 2333 5678888877778888888887777776653
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.016 Score=50.51 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 043144 123 TSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKL 202 (580)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (580)
+.++..+.-.|.+.-...++..+++..++.++.....|++.-++.||.+.|...|++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v---------------------- 238 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV---------------------- 238 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH----------------------
Confidence 4455555555566666666666666555556666666666666666666666666543
Q ss_pred hHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144 203 NLAMEVLHKQLEKECYPDVI-----TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK 277 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (580)
.+..-..+.. ........|.-.+++..|...+++++..+ +.++...|.-.-+..-.|+..+|++
T Consensus 239 ----------ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 239 ----------EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred ----------HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence 2211111111 11222233444556666666666665543 2244444444444444566666666
Q ss_pred HHHHhhhC
Q 043144 278 FLNDMPSY 285 (580)
Q Consensus 278 ~~~~~~~~ 285 (580)
.++.|.+.
T Consensus 308 ~~e~~~~~ 315 (366)
T KOG2796|consen 308 QLEAMVQQ 315 (366)
T ss_pred HHHHHhcc
Confidence 66666654
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0043 Score=46.56 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=37.3
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 409 DGKVDVAVEILNQLSNKHC-SPVLITYNTVIDGLSKVG--------KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478 (580)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 478 (580)
.+++.....+|+.+++.++ .|+..+|+.++.+..+.. +.-..+.+|++|+..+++|+..+|+.++..+.+
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 3444444444444444444 444444444444433221 233456667777776777777777777666543
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.33 E-value=0.14 Score=47.69 Aligned_cols=306 Identities=16% Similarity=0.122 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHH
Q 043144 100 LEEGFKFLESMVYHGDIPDIIPCTSLIRGF--CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY--CRLGEIDNALQ 175 (580)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~ 175 (580)
+..+.++|..-.+. ..|..|-.++ .-.||-..|.++-.+..+. +..|......|+.+- .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 44566666654332 1233333333 3556777777766654421 123333333333332 33678888888
Q ss_pred HHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-C
Q 043144 176 VLERMSVAPDVVT--YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG-C 252 (580)
Q Consensus 176 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 252 (580)
-|+.|-..|.... ...|.-.--+.|..+.|..+-+..-..- +.-...+...+...+..|+++.|+++.+.-++.. +
T Consensus 142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 8887722222211 2222223335677777777766665542 2234566777777778888888888877665432 2
Q ss_pred CCCHhH--HHHHHHHH---HhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043144 253 IPDVVT--YNVLVNGI---CKEGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV 326 (580)
Q Consensus 253 ~~~~~~--~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 326 (580)
.+++.- -..|+.+- .-.-+...|.+.-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP 296 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHP 296 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CCh
Confidence 333221 11222211 1123455555555444433 34432 22334456778888888888888888763 444
Q ss_pred hhHHHHHHHHHhcCCHHHHH----HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 327 VTFNILINFLCRKGLLGRAI----DILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 402 (580)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 402 (580)
..+ ++..+.+.|+..... +-++.|... +..+......+-...|++..|..--+..... .|....|..|
T Consensus 297 ~ia--~lY~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLl 368 (531)
T COG3898 297 DIA--LLYVRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLL 368 (531)
T ss_pred HHH--HHHHHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHH
Confidence 333 233344555532221 112222222 5566666677777788888877777766654 5666677777
Q ss_pred HHHHH-hcCChHHHHHHHHHHHhC
Q 043144 403 LTALC-KDGKVDVAVEILNQLSNK 425 (580)
Q Consensus 403 i~~~~-~~g~~~~A~~~~~~~~~~ 425 (580)
.+.-. ..|+-.++...+.+..+.
T Consensus 369 AdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHhcC
Confidence 66644 448888888888877654
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0013 Score=46.60 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
..|.+.+++++|++++++++..+ |.+...|...+.++...|++++|.+.+++..+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34555666666666666666542 44555555566666666666666666666665554
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.094 Score=51.96 Aligned_cols=93 Identities=13% Similarity=0.258 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCC-------CCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHG-------DIPDIIPCTSLIRGFCKVGKTR--KATRVMEIVEDSGAVPDVIT 156 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~ 156 (580)
++..-+-.+...|.+.+|.++----+... ...+..-++..-.+|.+-.+.. +-..-++++.++|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 33444556777788877765532211100 0001112222333444333322 22233445555564455533
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHcC
Q 043144 157 YNVLISGYCRLGEIDNALQVLERMS 181 (580)
Q Consensus 157 ~~~l~~~~~~~g~~~~A~~~~~~~~ 181 (580)
+...++-.|.+.+|-++|.+-+
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHHcC
Confidence 4455566777777777777764
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.20 E-value=0.049 Score=47.76 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=21.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144 301 MCSTGRWMDAERLLAEMVLKGC--SPSVVTFNILINFLCRKGLLGRAIDILEKMPK 354 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (580)
+...|++.+|...|+.+..... +--......++.++.+.|+++.|...+++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555544444443310 01112233344444445555555555544444
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.17 E-value=0.022 Score=46.56 Aligned_cols=93 Identities=10% Similarity=-0.097 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 043144 122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDS 199 (580)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 199 (580)
......-+...|++++|..+|.-+.-.+ +.+..-|..|+.++-..+++++|+..|... -...|+......+.++...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 4445555778999999999999988777 567777888999999999999999999876 2245666677788999999
Q ss_pred CChhHHHHHHHHHHhC
Q 043144 200 GKLNLAMEVLHKQLEK 215 (580)
Q Consensus 200 g~~~~A~~~~~~~~~~ 215 (580)
|+.+.|+..|+.....
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999888874
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.0086 Score=54.40 Aligned_cols=51 Identities=10% Similarity=-0.067 Sum_probs=22.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 130 CKVGKTRKATRVMEIVEDSGAVPD--VITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.+.|++++|...|+.+.+..+... +..+..++.+|...|++++|+..|+++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334445555555544444321100 123344444444445555554444444
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.07 E-value=0.018 Score=49.23 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 429 PVLITYNTVIDGLS-----KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478 (580)
Q Consensus 429 ~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 478 (580)
.+..+|..+++.|. +.|..+=....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 56777777887776 346667677777777778888888888888877654
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.29 Score=50.29 Aligned_cols=178 Identities=14% Similarity=0.114 Sum_probs=107.5
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI--IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
-....-++.+.+...+.-|+.+.+.- +.+++. ......++-+.+.|++++|...|-+.+..- .|. .++.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHH
Confidence 35566788888888898898877653 333332 345556666788999999998887665431 221 2344
Q ss_pred HHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144 163 GYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ 239 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 239 (580)
-|.......+-..+++.+ +. .+...-..|+.+|.+.++.++-.+..+..- .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 454444455555555555 32 344555678888888888888776655433 1211 1124455666667777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
|..+-..... .......++ -..|++++|+..+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7766554432 233333333 34677888888777764
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.01 E-value=0.43 Score=47.38 Aligned_cols=412 Identities=14% Similarity=0.086 Sum_probs=233.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHH
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVI-TYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILR 194 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 194 (580)
+...|..++.---...+.+.+..+++.+... .|-.. -|......-.+.|..+.+..+|++. +++-....|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445555554333444456677777777755 44444 4555666666789999999999997 66666777776665
Q ss_pred HHH-hcCChhHHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh---
Q 043144 195 TLC-DSGKLNLAMEVLHKQLEK-ECY-PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK--- 268 (580)
Q Consensus 195 ~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 268 (580)
.+. ..|+.+.....|+.++.. |.. .....|...|..-..+++......+++.+++. ....++..-..|.+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 544 567888888888887764 211 23456777777777888899999999998875 23334433333321
Q ss_pred c------CCHHHHHHHHHHhhhC----CCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043144 269 E------GRLDEAIKFLNDMPSY----GCQPNVITHNIILRSMC-STGRWMDAERLLAEMVLKGCSPSVVTFNILINFLC 337 (580)
Q Consensus 269 ~------g~~~~A~~~~~~~~~~----~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (580)
. ...+++.++-...... ...+....+..-+.--. ..+..+++.....+... .--.++-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHH
Confidence 1 1222222222221110 00001111111111000 00111111111111110 1111222
Q ss_pred hcCCHHHHHHHHHHhhhCC---C----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043144 338 RKGLLGRAIDILEKMPKHG---C----TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 410 (580)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 410 (580)
..-...+.+..|+.-.+.- + .++..+|..-+..-...|+.+.+.-+|++..-- +..-...|-..+.-....|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcC
Confidence 2233334444444443321 1 124567888888888999999999999988642 1122335555555556669
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHH---
Q 043144 411 KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI-TYSSLVGGLSREGKVDEAI--- 486 (580)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~--- 486 (580)
+.+-|..++....+-..+..+.+-..-....-..|++..|..+++.....- |+.. .-..-+....+.|+.+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 999999888887766544333333222333446789999999999998763 5533 2233345567888888887
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043144 487 KLFHDLERLGVRPN--VITYNSIML-GLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG 550 (580)
Q Consensus 487 ~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
.++.........+. ...+...++ .+.-.++.+.|..++.++.+. ++++...|..+++.+..++
T Consensus 424 ~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 424 ELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 44444432211111 111111221 234568899999999999976 5788888888888876665
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.53 Score=47.87 Aligned_cols=110 Identities=22% Similarity=0.170 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGL 441 (580)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 441 (580)
.+.+--+.-+...|+-.+|.++-.+.. -||-..|-.-+.+++..+++++-.++-.... .+..|..++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344455555666777777777665543 3676677677777777777776555443332 145677777777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFH 490 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (580)
.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 788888888777765421 11 35567777777777776643
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.03 Score=47.83 Aligned_cols=112 Identities=20% Similarity=0.247 Sum_probs=70.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144 381 IEYLEIMVSRGCYPDIVTYNTLLTALCKD-----GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLE 455 (580)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 455 (580)
...|+.... -..+-.+|..+++.|.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------- 103 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------- 103 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence 445555432 245888999999998754 7788888889999999999999999999998754 3211
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 456 EMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK 513 (580)
Q Consensus 456 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 513 (580)
|... +..+...| -.+-+-|++++++|...|+-||..++..+++.+.+
T Consensus 104 --------p~n~-fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 104 --------PRNF-FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred --------cccH-HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 1110 11111111 11234456666666666666666666666666533
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0068 Score=42.90 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=35.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 474 GGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..|.+.+++++|.++++.+...++. +...|...+.++...|++++|.+.+++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456666666666666666665544 5555666666666666666666666666654
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.026 Score=46.52 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 471 SLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM 527 (580)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 527 (580)
.++..+...|++++|..+.+.+....+- +...|..++.+|...|+..+|.++|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555544332 4445555555555555555555555544
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.89 E-value=0.1 Score=52.22 Aligned_cols=120 Identities=21% Similarity=0.180 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 043144 444 VGKTEQAMKLLEEMRTKGLKPDTITYSSL-VGGLSREGKVDEAIKLFHDLERLG--V-RPNVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 444 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~ 519 (580)
....+.|.++++.+... -|+...|... .+.+...|++++|.+.|+++.... . +.....+--+++.+....+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888875 4666555433 455677888999999998765311 1 1233455667778888899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHhCC
Q 043144 520 AIDILADMVTRSCKPTEATYTILIEGI-AYEGLA-------KEALDLLNQLCSRG 566 (580)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~~g 566 (580)
|.+.+.++.+.+ .-+..+|..+..+| ...|+. ++|.++++++-...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999988763 33455555444443 677888 88888888775443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.84 E-value=0.0039 Score=44.84 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 502 ITYNSIMLGLCKARQTYRAIDILADMVTR--SCKPT----EATYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
.+|+.+..+|...|++++|++.+++.++. ...++ ..++..++.++...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666665532 01111 3345556666666666666666666654
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.034 Score=49.44 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP---TEATYTIL 542 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 542 (580)
.|+.-+ .+...|++..|...|...++..+.. ....+.+|..++...|++++|..+|..+.+. ++. -+..+..|
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHH
Confidence 455544 4455667888888888888754431 1345667888888889999998888888865 222 25778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 543 IEGIAYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
+.+..+.|+.++|+..|+++.+.-+..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 88888899999999999998887655543
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.48 Score=45.10 Aligned_cols=166 Identities=15% Similarity=0.063 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144 363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRG---CYPDIVTYNTLLTALCK---DGKVDVAVEILNQLSNKHCSPVLITYNT 436 (580)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 436 (580)
+...++-+|....+++.-+++.+.+.... +.-....-....-++.+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556777778888888888776541 11122223334445556 7778888888777555455677777777
Q ss_pred HHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC----HHHHHHHH---HHHH-hCC---
Q 043144 437 VIDGLSK---------VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK----VDEAIKLF---HDLE-RLG--- 496 (580)
Q Consensus 437 l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~---~~~~-~~~--- 496 (580)
+...|-. ....++|...|.+.-+. .||..+--.++..+...|. -.+..++- ..+. +.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7666531 11245555555554332 2333322222222222222 11222222 1111 122
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 497 VRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
...+...+.+++.++.-.|++++|.+.+++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1223344455666666666666666666666644
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.93 Score=46.86 Aligned_cols=215 Identities=14% Similarity=0.100 Sum_probs=133.0
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHh----CC-----CCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVY----HG-----DIPD-------IIPCTSLIRGFCKVGKTRKATRVMEIVE 146 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (580)
..++.+.++.++...+++-.=.-+++...+ .+ ...| ....-.-+..+.+..-++-|..+-+.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~-- 359 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS-- 359 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh--
Confidence 445677788888887776554444444322 11 0001 12234566777888888888877643
Q ss_pred hCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 043144 147 DSGAVPDV--ITYNVLISGYCRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI 222 (580)
Q Consensus 147 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (580)
.+.+++. ......++.+.+.|++++|...|-+. +. .| ..++.-|....+..+-..+++.+.+.|.. +..
T Consensus 360 -~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 360 -QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred -cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 2222222 23444555666789999999887765 32 22 23455566666777777788888888754 455
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144 223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC 302 (580)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 302 (580)
.-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++ -
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---E 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---H
Confidence 56778899999999988777666544 2211 11244566777777878887776655432 333344443 4
Q ss_pred hcCChHHHHHHHHHH
Q 043144 303 STGRWMDAERLLAEM 317 (580)
Q Consensus 303 ~~~~~~~a~~~~~~~ 317 (580)
..+++++|.+++..+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 468889998888765
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0034 Score=45.18 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 043144 158 NVLISGYCRLGEIDNALQVLER 179 (580)
Q Consensus 158 ~~l~~~~~~~g~~~~A~~~~~~ 179 (580)
+.++..|...|++++|+..|++
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333444444444444444333
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=0.65 Score=43.72 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 478 (580)
.+..+.-+...|+...|.++-.++. .|+...|...+.+++..++|++-.++... +-.+.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444445555666666655544442 25566666666677777766665554322 1123456666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 479 EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDIL 524 (580)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 524 (580)
.|+..+|..+..++ + + ..-+..|.+.|++.+|.+..
T Consensus 250 ~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 67666666665552 1 1 23444566666666666543
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.60 E-value=0.7 Score=44.01 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=18.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390 (580)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 390 (580)
+-..+..++.+..-.|+.++|.+..+++.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555556666666666666666666554
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.42 Score=43.14 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=73.7
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043144 231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDA 310 (580)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 310 (580)
....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44566777777777776655322 34455566777777777777777777765432111112212223333333333333
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHHhcC
Q 043144 311 ERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH--GCTPNSLSYNPVLHGFCKEK 375 (580)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 375 (580)
..+-...-.. +.|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 3333333322 224555556666666677777766665555443 222 4444555555555444
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.077 Score=48.22 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=88.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhCCCHH
Q 043144 373 KEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID----GLSKVGKTE 448 (580)
Q Consensus 373 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~ 448 (580)
.+|++.+|-..++++++.- +.|...+...=.+|.-.|+.+.-...++++...- .++...|..+-. ++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566666777777777652 3355566666677777777777777777665431 244433333322 334677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP----NVITYNSIMLGLCKARQTYRAIDIL 524 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 524 (580)
+|.+.-++..+.+ +-|.-.-..+.+.+-..|+..++.++..+-... .+. -...|-..+..+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777777776654 335555556666667777777777776554321 110 0122333334455567777777777
Q ss_pred HHHH
Q 043144 525 ADMV 528 (580)
Q Consensus 525 ~~~~ 528 (580)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.57 E-value=0.059 Score=41.64 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT---EATYTILIEGIAYEGL 551 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 551 (580)
+.+..|+++.|++.|.+....-++ +...||.-..++.-+|+.++|++-+++.++..-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555555555555555544332 444555555555555555555555555544311111 1122223334445555
Q ss_pred HHHHHHHHHHHHhCC
Q 043144 552 AKEALDLLNQLCSRG 566 (580)
Q Consensus 552 ~~~A~~~~~~~~~~g 566 (580)
.+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.18 Score=45.36 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHH---HHHHHHhcCCh
Q 043144 126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNT---ILRTLCDSGKL 202 (580)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~ 202 (580)
.......|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..++.......+.. -+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 334567777777777777777665 34455566677777777777777777777732222222222 23444444444
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144 203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK--GCIPDVVTYNVLVNGICKEGRLDEA 275 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 275 (580)
.+...+-++.-.. +-|...-..+...+...|+.+.|.+.+-.+.++ |.. |...-..++..+.-.|.-+.+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 4444433333221 225666666777777778888777766666544 222 455566666666666643333
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.46 E-value=0.024 Score=46.72 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCchhHHHH
Q 043144 502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC-----SRGVVKKSSAEQV 576 (580)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~~~~~ 576 (580)
.+...++..+...|++++|...+++++... |.+...|..++.+|...|+..+|.+.|+++. +.|+.|++....+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 356677888889999999999999999874 7889999999999999999999999998873 4688887776654
Q ss_pred H
Q 043144 577 A 577 (580)
Q Consensus 577 ~ 577 (580)
.
T Consensus 142 ~ 142 (146)
T PF03704_consen 142 Y 142 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 231
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.44 E-value=0.83 Score=43.02 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043144 293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFC 372 (580)
Q Consensus 293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (580)
+.+..+.-+...|+...|.++-.+.. -||...|-..+.+++..++|++-.++-.. + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34444556666777777777655542 35777777777888888888776664332 1 14566777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043144 373 KEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421 (580)
Q Consensus 373 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 421 (580)
+.|+..+|..+...+ . + ..-+..|.++|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 888777777776652 1 1 3445667777777777665433
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.42 E-value=0.11 Score=51.20 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=111.2
Q ss_pred HHHHHHcCChHHHHHHHH--HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 91 LRRLVRNGELEEGFKFLE--SMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG 168 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 168 (580)
.....-+++++++.++.+ +++.. .| ....+.++.-+.+.|..+.|+.+-. |+.+ -.....+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcC
Confidence 456677899999887775 22211 22 3447788888899999999998853 3322 355567899
Q ss_pred ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144 169 EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 248 (580)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 248 (580)
+++.|.++.++. ++...|..|+....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+...
T Consensus 333 ~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 333 NLDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp -HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 999999887765 4777999999999999999999999987643 5677788888999988888888777
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 249 NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
..| -+|....++.-.|+.++..+++.+..
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 654 25555666677889998888887654
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.068 Score=51.40 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144 430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT----ITYSSLVGGLSREGKVDEAIKLFHDLERL 495 (580)
Q Consensus 430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (580)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|++++|+..++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666654 3332 23566666666666666666666666653
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.34 E-value=0.71 Score=42.79 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHH---
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGC-----YPDIVTYNTLLTALCKDGKVDVAVEILNQLSNK----HCSPVLITY--- 434 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~--- 434 (580)
+..++...+.++++++.|+...+-.. .....++..|...|.+..|+++|.-+.....+. ++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555556666666655543110 011225556666666666666665554443221 111101111
Q ss_pred --HHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144 435 --NTVIDGLSKVGKTEQAMKLLEEMRT----KGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDL 492 (580)
Q Consensus 435 --~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (580)
..+.-++-..|+...|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|+.+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223334455665555555555432 23111 1122344555666677766666666654
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.31 E-value=0.42 Score=47.66 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=46.1
Q ss_pred cccCCCccccccccCCCCCcccHHHHHHHHHHcCChHHHHHHH---------------HHHHhCCCCCChhhHHHHHHHH
Q 043144 65 HLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFL---------------ESMVYHGDIPDIIPCTSLIRGF 129 (580)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---------------~~~~~~~~~~~~~~~~~l~~~~ 129 (580)
+.+.|.+..+............|..|.......-+++-|.+.| +++.++|..|+.. .++..+
T Consensus 566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~ 642 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVF 642 (1081)
T ss_pred hhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHH
Confidence 3455555555555555444556666655544444555555444 4445666666664 345567
Q ss_pred HhcCChHHHHHHHHH
Q 043144 130 CKVGKTRKATRVMEI 144 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~ 144 (580)
+-.|.+.+|.++|.+
T Consensus 643 Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 643 AYQGKFHEAAKLFKR 657 (1081)
T ss_pred HhhhhHHHHHHHHHH
Confidence 888999999998865
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.24 E-value=0.11 Score=51.25 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=101.0
Q ss_pred HHHHhcCChhHHHHHHHHcCCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144 162 SGYCRLGEIDNALQVLERMSVAP--DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ 239 (580)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 239 (580)
....-.|+++++.++.+.-..-| +....+.++..+.+.|..+.|+++.. |.. .-.+...+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 33345778888766665221111 13447788888888888888887632 222 22345567888888
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
|.++.++. .+...|..|......+|+++-|.+.|.+..+ +..++-.|...|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 88766543 3677899999999999999999999988763 55667778888888887777777766
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
.| -++....++.-.|+.+++.+++.+.
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54 2455555666678888888887654
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.33 Score=46.97 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144 100 LEEGFKFLESMVYH--GDIPDIIPCTSLIRGFCK---------VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG 168 (580)
Q Consensus 100 ~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 168 (580)
.+.|+.+|.+++.. ..|.....|..+.-++.. ..+..+|.++-++..+.+ +.|+.....++.+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 34566677777622 122223444444333321 123345566666666666 566666666666666666
Q ss_pred ChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 169 EIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 169 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
+++.|..+|++. ...|| ..+|....-.+.-.|+.++|.+.+++.++.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 677777777766 33343 3445555555556666666666666655543
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.07 E-value=1 Score=40.30 Aligned_cols=222 Identities=20% Similarity=0.137 Sum_probs=100.2
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043144 305 GRWMDAERLLAEMVLKGCSP-SVVTFNILINFLCRKGLLGRAIDILEKMPKH-GCTPNSLSYNPVLHGFCKEKKMDRAIE 382 (580)
Q Consensus 305 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (580)
+....+...+.......... ...........+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444432110 2344455555555666666666665555431 112234444455555555555666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144 383 YLEIMVSRGCYPDIVTYNTLLT-ALCKDGKVDVAVEILNQLSNKHC--SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT 459 (580)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (580)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555432222 111111222 45555666666666655543211 01122222223334445555555555555554
Q ss_pred CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 460 KGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 460 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
.. .. ....+..+...+...++++.|...+......... ....+..+...+...+.++++...+.+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 11 2344444555555555555555555555443211 122333333333344445555555555543
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.03 E-value=0.8 Score=44.46 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
+|.++.++..+.+ +-|......+..+....|+++.|...|+++...++. ...+|......+...|+.++|.+.+++.+
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443 234444444444444444455555555555444322 23334444444444455555555555544
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.17 Score=46.16 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=86.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHH----HHHHHhcCChh
Q 043144 130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTI----LRTLCDSGKLN 203 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l----~~~~~~~g~~~ 203 (580)
.-.|+..+|-..++++.+.- |.|...+..-=++|.-.|+.+.-...++++ ...+|...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45666667666676666543 566666666666666677766666666666 223444333322 22344567777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 204 LAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP---DVVTYNVLVNGICKEGRLDEAIKFLN 280 (580)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (580)
+|.+.-++.++.+ +.|...-.++...+-..|++.++.+...+-...--.. -...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777766666654 2355555556666666677777766655433211000 12223334445566677888888776
Q ss_pred H
Q 043144 281 D 281 (580)
Q Consensus 281 ~ 281 (580)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.01 E-value=0.15 Score=40.34 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 043144 497 VRPNVITYNSIMLGLCKARQTYRAIDILADMVTR-SCKPTEATYTILIEGI 546 (580)
Q Consensus 497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 546 (580)
..|+..+..+++.+|+..|++..|.++++...+. +++.+...|..|++=+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3466777777777777777777777777776543 4555666777666544
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.00 E-value=0.051 Score=52.23 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043144 463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV---ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY 539 (580)
Q Consensus 463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 539 (580)
+.+...++.+..+|...|++++|+..|++.++.++. +. .+|..+..+|...|+.++|++.++++++.+ .+ .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 346778999999999999999999999999987654 23 458899999999999999999999999752 22 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 540 TILIE--GIAYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 540 ~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
..+.. .+..-.+.++..++++.+.+-|....+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~ 180 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGEDIGS 180 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCccCC
Confidence 21111 112233445778888888888875543
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.11 Score=48.82 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=44.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC-----CCCC---------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHG-----DIPD---------IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT 156 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 156 (580)
...|.+.|++..|..-|+.++..- .+++ ...++.+.-+|.+.+++..|++.-+.++..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 456778888888888888876431 1110 1122333334444444444444444444444 344444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHc
Q 043144 157 YNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 157 ~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.-.-+.++...|+++.|+..|+++
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444444444444444444444
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.62 Score=40.68 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcC-CCCCcchHHHHHHHHHhc
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMS-VAPDVVTYNTILRTLCDS 199 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~ 199 (580)
.|.....+|....++++|...+.+..+.. ..+...|. -.. .++.|.-+.+++. .+.-+..|+.-...|...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-AAK------ayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-AAK------AYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-HHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34444556666777777776666555321 11111111 112 2244444444442 212233445555666666
Q ss_pred CChhHHHHHHHHHH
Q 043144 200 GKLNLAMEVLHKQL 213 (580)
Q Consensus 200 g~~~~A~~~~~~~~ 213 (580)
|..+.|-..++++-
T Consensus 105 GspdtAAmaleKAa 118 (308)
T KOG1585|consen 105 GSPDTAAMALEKAA 118 (308)
T ss_pred CCcchHHHHHHHHH
Confidence 66666655555543
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.98 E-value=1.1 Score=39.86 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043144 370 GFCKEKKMDRAIEYLEIMVSRGCY--PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK---- 443 (580)
Q Consensus 370 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 443 (580)
.-.+.|++++|...|+.+....+. -...+...++.++.+.++++.|+..+++...........-|-..+.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 344556666666666666654221 11224555555666666666666666666655422222233333333331
Q ss_pred ---CCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144 444 ---VGKT---EQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT 517 (580)
Q Consensus 444 ---~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 517 (580)
..+. ..|..-|++++.. -||.. -...|..-+..+... + ...=..+.+-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~-L---A~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA-L---AGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH-H---HHHHHHHHHHHHHhcCh
Confidence 1222 2333334444433 12211 111222222222110 0 00012345567777777
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 518 YRAIDILADMVTRSCKPT---EATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
-.|..-++++++. .+.. ...+..+.++|.+.|-.++|.+.-+-+..
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7777777777765 2322 34555666777777777777666554443
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=2.3 Score=43.63 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG 510 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (580)
..+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-++.. .+.-|.-.+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344555666777888888888776654 4677777777888888888887666655443 13346667778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLL 559 (580)
Q Consensus 511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
|.+.|+.++|.+++-+.. +.. ....+|.+.|++.+|.++.
T Consensus 754 c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 888888888888876543 111 4566777777777777654
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.21 Score=47.06 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
+++.+..++.+.+++.+|++.-.+....++. |+.....-..+|...|+++.|+..|+++++.. |.|..+-..|+..-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3445555666666666666666666655533 55555555666666666666666666666542 333334444444433
Q ss_pred hcCCHH-HHHHHHHHHHhC
Q 043144 548 YEGLAK-EALDLLNQLCSR 565 (580)
Q Consensus 548 ~~g~~~-~A~~~~~~~~~~ 565 (580)
+..+.. ...++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 333322 335566665543
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.82 E-value=1.9 Score=41.40 Aligned_cols=425 Identities=11% Similarity=0.028 Sum_probs=203.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
.+|-.|++-+-.+|.+++..++++++..- .|--..+|...+.+-....++.....+|.+..... .+...|...+..-
T Consensus 43 ~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YI 119 (660)
T COG5107 43 LSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYI 119 (660)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHH
Confidence 58999999999999999999999999653 33345678888888888899999999999998864 4566777666655
Q ss_pred HhcC-----C----hhHHHHHHHH-cCCCC-CcchHHHHHHHHHh---cC------ChhHHHHHHHHHHhCCCCCChhhH
Q 043144 165 CRLG-----E----IDNALQVLER-MSVAP-DVVTYNTILRTLCD---SG------KLNLAMEVLHKQLEKECYPDVITY 224 (580)
Q Consensus 165 ~~~g-----~----~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~---~g------~~~~A~~~~~~~~~~~~~~~~~~~ 224 (580)
.+.+ + +-+|.++.-. +.+.| ....|+..+..+-. .| +++.....|.+++...+..=...|
T Consensus 120 Rr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW 199 (660)
T COG5107 120 RRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLW 199 (660)
T ss_pred HhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHH
Confidence 4433 1 1223332222 23444 34456665544332 33 344555666666654211111112
Q ss_pred HHH------HHH-----HH--hcCCHhHHHHHHHHHHHc--CCC----CCHhHHHH-----------HHHHHHhc-----
Q 043144 225 TIL------IEA-----TC--KESGVGQAMKLLDEMRNK--GCI----PDVVTYNV-----------LVNGICKE----- 269 (580)
Q Consensus 225 ~~l------i~~-----~~--~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~~~~~----- 269 (580)
... +.- +. ..--+-.|.+.++++... |.. .+..+++. +|.--...
T Consensus 200 ~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~ 279 (660)
T COG5107 200 KDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLG 279 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccC
Confidence 111 000 00 011133455555554321 211 01122221 11110000
Q ss_pred CC-HHH-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043144 270 GR-LDE-AIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAID 347 (580)
Q Consensus 270 g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 347 (580)
|+ ..+ .--++++.... +.-....|.-.-.-+...++-+.|.+......+. .|+ .--.+...|...++.+....
T Consensus 280 ~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~ 354 (660)
T COG5107 280 GRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYG 354 (660)
T ss_pred CCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhh
Confidence 00 000 00011111100 0111122222222233344555555444332221 122 11122233333444444444
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 348 ILEKMPKHGCTPNSLSYNPVLHGFCK---EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN 424 (580)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (580)
.|+...+. ...-..++..=.. .|+++...+++-+-. ..-..+|...+....+..-++.|+.+|-+..+
T Consensus 355 ~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 355 CFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred hHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 44433221 0000000000000 112211111111101 11234555666666666667777777777777
Q ss_pred CC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--
Q 043144 425 KH-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT-YSSLVGGLSREGKVDEAIKLFHDLERLGVRPN-- 500 (580)
Q Consensus 425 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 500 (580)
.+ ..+++..+++++..++ .|++.-|..+|+-=... -||... .+-.+..+...++-+.|..+|+..... +..+
T Consensus 426 ~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~ 501 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQL 501 (660)
T ss_pred cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhh
Confidence 66 4566667777776554 45666777777654433 233333 234455566677777777777755421 1112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 501 VITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..+|..++.--..-|+...+..+-+++.+.
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 456777777667777777777766666543
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.81 E-value=1.6 Score=40.52 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=113.6
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhH-------HHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCH-----
Q 043144 338 RKGLLGRAIDILEKMPKHGCTPNSLSY-------NPVLHGFCKEK-KMDRAIEYLEIMVSR--------GCYPDI----- 396 (580)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~~----- 396 (580)
+.|+.+.|..++.+........++... ..........+ +++.|..++++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 456666666666555443211122111 11222233444 666666666554332 122333
Q ss_pred HHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043144 397 VTYNTLLTALCKDGKV---DVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLV 473 (580)
Q Consensus 397 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 473 (580)
.++..++.+|...+.. ++|..+++.+..... ..+.++..-+..+.+.++.+++.+.+.+|+.. +.-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 2566677777776654 456666666655442 22455555666777788899999999999875 221333444444
Q ss_pred HHH---HhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHH----HHHHHhcCC------HHHHHHHHHHHHHc-CCCCCHHH
Q 043144 474 GGL---SREGKVDEAIKLFHDLERLGVRPNVI-TYNSI----MLGLCKARQ------TYRAIDILADMVTR-SCKPTEAT 538 (580)
Q Consensus 474 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l----~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~ 538 (580)
..+ ... ....|...+..+......|... ....+ +......++ .+...+++....+. +.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 333 3456667776665433343332 11111 111222222 33333344432221 22333333
Q ss_pred H---HHH----HHHHHhcCCHHHHHHHHHHHH
Q 043144 539 Y---TIL----IEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 539 ~---~~l----~~~~~~~g~~~~A~~~~~~~~ 563 (580)
- ..+ +..+.+.++|++|.++++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 345678899999999998654
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.81 E-value=0.029 Score=34.78 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTIL 542 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 542 (580)
+..+..+|...|++++|+++++++++.. |.|...|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 4445555555555555555555555542 4444444444
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.19 Score=39.79 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG 475 (580)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 475 (580)
..++..++.++++.|+++....+++..=.-+...... .+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456666666777777666666665432211100000 000 01122456888888888888
Q ss_pred HHhCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHh
Q 043144 476 LSREGKVDEAIKLFHDLE-RLGVRPNVITYNSIMLGLCK 513 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 513 (580)
|+..|++..|.++.+... ..+++-+...|..|+.-...
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888888888875 45666667778777764443
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.77 E-value=3.8 Score=44.51 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHhhh
Q 043144 257 VTYNVLVNGICKEG--RLDEAIKFLNDMPS 284 (580)
Q Consensus 257 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 284 (580)
.-...++..|.+.+ .+++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34446777787777 66777777666654
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.99 Score=38.10 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITY--SSLVGGLSREGKVDEAIKLFHDLERLGVRPNV--ITYNSIMLGLCKARQTYRAIDIL 524 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~ 524 (580)
+.....+++...+..-...++ ..+...+...|++++|...++.........+. .+-..|.......|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555555544211111122 23455678899999999999987753222121 22234667778889999999998
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144 525 ADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG 566 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 566 (580)
+.....++ .......-++++...|+.++|+.-|++..+.+
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88765433 22334556788999999999999999999987
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=0.52 Score=47.32 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH------HHHHHHHHHh----cCChh
Q 043144 102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT------YNVLISGYCR----LGEID 171 (580)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~----~g~~~ 171 (580)
-..-+|.-++.. .||. ...++....-.||-+.+++++....+.+.-..+.+ |...+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 456667777665 4443 45667777788899999988888776543333333 2222332222 34567
Q ss_pred HHHHHHHHc-CCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 043144 172 NALQVLERM-SVAPDVVTYN-TILRTLCDSGKLNLAMEVLHKQLEKEC---YPDVITYTILIEATCKESGVGQAMKLLDE 246 (580)
Q Consensus 172 ~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (580)
.|.++++.+ ..-|+...|. .-++.+...|++++|++.|+++..... +.....+--+.-.+.-.+++++|...|..
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 888888887 4346655554 345667778999999999987664211 12344555677778889999999999999
Q ss_pred HHHcCCCCCHhHHHHHH-HHHHhcCCH-------HHHHHHHHHhhh
Q 043144 247 MRNKGCIPDVVTYNVLV-NGICKEGRL-------DEAIKFLNDMPS 284 (580)
Q Consensus 247 ~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 284 (580)
+.+.. .-+...|.-+. .++...|+. ++|.++|.++..
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98763 22333444333 344567777 899999988764
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.65 E-value=2.4 Score=41.37 Aligned_cols=425 Identities=11% Similarity=0.082 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHc
Q 043144 102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL-GEIDNALQVLERM 180 (580)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 180 (580)
....+|+.+..+ .+.|+..|...+.-+-+.+.+.+...+|..|.... |.++..|..-....... -+++.|+.+|.+.
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445667777665 56689999999988888888999999999998765 55565665544443343 3489999998876
Q ss_pred -CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh---------hHHHH------HHHHHhc---------
Q 043144 181 -SVAPDV-VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI---------TYTIL------IEATCKE--------- 234 (580)
Q Consensus 181 -~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l------i~~~~~~--------- 234 (580)
...||. ..|....+.-.. .+..+..+-...|...+.. .|... +.+..+.
T Consensus 167 LR~npdsp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~ 241 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF 241 (568)
T ss_pred hhcCCCChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence 444543 344333222110 0111111111111000000 00000 0000000
Q ss_pred CCHhH-HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144 235 SGVGQ-AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERL 313 (580)
Q Consensus 235 g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 313 (580)
....+ -..+.+.+... .+.++.+|..+..- .++-..+....+ ....-.+.......+....+
T Consensus 242 d~~kel~k~i~d~~~~~-~~~np~~~~~laqr------------~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v 304 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSK-APDNPLLWDDLAQR------------ELEILSQTDLQH----TDNQAKAVEVGSKESRCCAV 304 (568)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCccHHHHHHH------------HHHHHHHhhccc----hhhhhhchhcchhHHHHHHH
Confidence 00000 00011111111 12233333322221 111111000000 00000011111112223356
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcC------CHHHHHHHHHHhhhCC-CC-CCHhhHHHHHHHHHhcCC-HHHHHHHH
Q 043144 314 LAEMVLKGCSPSVVTFNILINFLCRKG------LLGRAIDILEKMPKHG-CT-PNSLSYNPVLHGFCKEKK-MDRAIEYL 384 (580)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~-~~~A~~~~ 384 (580)
|++..+. -++...|+..|..|.... .+.....+++...+.+ .. .....|..+.-.+..... .+-|..+.
T Consensus 305 ~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~ 382 (568)
T KOG2396|consen 305 YEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT 382 (568)
T ss_pred HHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh
Confidence 6665543 345556666666554422 2334444454443321 11 133445555555555444 22333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHH
Q 043144 385 EIMVSRGCYPDIVTYNTLLTALCKDG-KVDVA-VEILNQLSNKHCSPVLITYNTVIDGLSKVGK-TEQA-M-KLLEEMRT 459 (580)
Q Consensus 385 ~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A-~-~~~~~m~~ 459 (580)
.. ++..+...|..-+....+.. +++-- .+.|..+...-..+....|+... .|+ ++.. . .++.....
T Consensus 383 ~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 383 TE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 22 23345555555444444221 22111 12222233222223334444433 122 1111 1 12222222
Q ss_pred CCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCH
Q 043144 460 KGLKPDTITY-SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC--KARQTYRAIDILADMVTRSCKPTE 536 (580)
Q Consensus 460 ~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~ 536 (580)
. ..|+..++ +.++..+.+.|-+.+|...+..+... ++|+...|..++..-. .+.+..-++++++.|... +..|+
T Consensus 454 ~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~ 530 (568)
T KOG2396|consen 454 V-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADS 530 (568)
T ss_pred h-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCCh
Confidence 2 24555544 56777788888899999999998876 4567888887775432 233477788899988865 33788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 537 ATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..|.....-=...|..+.+-.++.++.+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8888877766788888888887776654
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.60 E-value=1 Score=36.70 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKV 132 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (580)
...++..+...+.+.....+++.++..+ +.+....+.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555555555555555555543 24444555555555543
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.56 E-value=2 Score=41.96 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 471 SLVGGLSREGKVDEAIKLFHDLERLGVR-PNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
.+..++.+.|+.++|.+.++++.+..+. .+..+...|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444555555556666655555432221 123344455555555556666555555543
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.55 E-value=0.037 Score=34.33 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL 160 (580)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 160 (580)
+..+...|...|++++|.++|+++++.. |.|+..|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 4445555555555555555555555544 3444444433
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.52 E-value=0.5 Score=43.74 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=123.0
Q ss_pred HHHHcCChHHHHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCChHHHHHHH----HHHHhCC-CCCCHHHHHHHHHHHH
Q 043144 93 RLVRNGELEEGFKFLESMVYHGD-IPD-IIPCTSLIRGFCKVGKTRKATRVM----EIVEDSG-AVPDVITYNVLISGYC 165 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~-~~~~~~~~~~l~~~~~ 165 (580)
.+..+.+.+.|+..+.+.+.+-. ..+ ..++..+..+....|.+++++..- +...+.. -..-...|..+..++.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888877766521 111 235566777778888887766432 2222211 0112334555666666
Q ss_pred hcCChhHHHHHHHHc-C---CCC--C-cchHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHh
Q 043144 166 RLGEIDNALQVLERM-S---VAP--D-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKE-----CYPDVITYTILIEATCK 233 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~-~---~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~ 233 (580)
+.-++.+++.+-..- + ..| + -...-.+..++.-.+.++++++.|+.+.+.- .......+-.|...|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666666776665443 1 111 1 1234456677777778888888888776531 11223466777777888
Q ss_pred cCCHhHHHHHHHHHHHc----CCCCCHh-HH-----HHHHHHHHhcCCHHHHHHHHHHhhh----CCCCC-CHHHHHHHH
Q 043144 234 ESGVGQAMKLLDEMRNK----GCIPDVV-TY-----NVLVNGICKEGRLDEAIKFLNDMPS----YGCQP-NVITHNIIL 298 (580)
Q Consensus 234 ~g~~~~A~~~~~~~~~~----~~~~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~ll 298 (580)
..++++|.-......+. ++. |.. -| ..|.-++...|....|.+.-++..+ .|-.+ -......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888777665554332 211 211 11 2233455566776666666665432 22111 122333455
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 043144 299 RSMCSTGRWMDAERLLAEMV 318 (580)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~ 318 (580)
+.|...|+.+.|..-|+++.
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 55666777777666665543
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.51 E-value=1.7 Score=38.68 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=28.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144 300 SMCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH 355 (580)
Q Consensus 300 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (580)
.-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++....
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3345555666666655555431 1112233444455555566666666655555544
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.19 Score=44.80 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPD---IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA--VPDVITYNVLISGYCRL 167 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 167 (580)
.+.+.|++.+|..-|..-++. .|.+ ...+..|..++..+|+++.|..+|..+.+.-+ +.-+..+.-|+.+..+.
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 344555566666666666554 2211 23445566666666666666666666655321 12234455555555566
Q ss_pred CChhHHHHHHHHc
Q 043144 168 GEIDNALQVLERM 180 (580)
Q Consensus 168 g~~~~A~~~~~~~ 180 (580)
|+.++|...|+++
T Consensus 229 ~~~d~A~atl~qv 241 (262)
T COG1729 229 GNTDEACATLQQV 241 (262)
T ss_pred cCHHHHHHHHHHH
Confidence 6666666666655
No 262
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.48 E-value=3.7 Score=42.42 Aligned_cols=177 Identities=15% Similarity=0.088 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHh
Q 043144 99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRG-----FCKVGKTRKATRVMEIVED-------SGAVPDVITYNVLISGYCR 166 (580)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 166 (580)
+..+|.++++.....| +......+..+ +....|.+.|..+|+.+.+ .+ .+.....++.+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 3567888888877765 33333333322 3455688888888888766 44 33355567777766
Q ss_pred cC-----ChhHHHHHHHHcCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 043144 167 LG-----EIDNALQVLERMSVAPDVVTYNTILRTLCDS---GKLNLAMEVLHKQLEKECYPDVITYTILIEATCK----E 234 (580)
Q Consensus 167 ~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 234 (580)
.. +.+.|+.++.+.....++..-..++..+... .+...|.++|..+.+.| ....+..+..+|.. .
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 33 4566777777762223333333444444332 24567777777777766 33333333333322 3
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
.+...|..++....+.| .|....-...+..+.. +.++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 45667777777776665 2111111112222222 55555555555554433
No 263
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.33 E-value=4.5 Score=42.51 Aligned_cols=191 Identities=16% Similarity=0.080 Sum_probs=95.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHH
Q 043144 373 KEKKMDRAIEYLEIMVSRGC-YPD-------IVTYNTLLTALCKDGKVDVAVEILN--------QLSNKHCSPVLITYNT 436 (580)
Q Consensus 373 ~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~ 436 (580)
-.+++..|....+.+..... .|+ +..+....-.+...|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46889899999888875321 111 2222233333556799999999997 3444443333333322
Q ss_pred H--HHHHHhCC--CHHH--HHHHHHHHHHC-CCCC--CHHHHHHHH-HHHHhCC--CHHHHHHHHHHHHh-C--CCCCC-
Q 043144 437 V--IDGLSKVG--KTEQ--AMKLLEEMRTK-GLKP--DTITYSSLV-GGLSREG--KVDEAIKLFHDLER-L--GVRPN- 500 (580)
Q Consensus 437 l--~~~~~~~g--~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l~-~~~~~~g--~~~~A~~~~~~~~~-~--~~~~~- 500 (580)
+ +..+...+ ..++ +..+++.+... .-.| +..++..++ .++.... ...++...+.+..+ . ....+
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 22222222 2223 66777665432 1122 333344443 3332211 12244444444321 1 11111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHh
Q 043144 501 --VITYNSIMLGLCKARQTYRAIDILADMVTRSCK-P--TEATYTI-----LIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 501 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..+++.+...+. .|+..+..+.........-. | ....|.. +.+.+...|+.++|.....+...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 122333333333 68887766665554322111 2 4556644 34457788999999998887654
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.23 E-value=0.55 Score=37.63 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGCYP--DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS 442 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (580)
-.....+.|++++|.+.|+.+..+-+.. ...+-..++.+|.+.+++++|...++++.+.++.....-|-..+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344455677777777777766542221 123455666667777777777777777766653322233444444433
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=2 Score=37.73 Aligned_cols=204 Identities=11% Similarity=-0.000 Sum_probs=103.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
..|-....+|.-..+++.|..-+..+..- ...+...|. .. .-+++|.-+.+++.+. +.-+..++.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 35555666777788888888877777532 222222222 12 2345556666666543 22334556667788
Q ss_pred HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHhcCCHhH
Q 043144 165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK---E--CYPDVITYTILIEATCKESGVGQ 239 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~ 239 (580)
..+|.++.|-..+++... ....-++++|+++|.+.... + ...-...+..+...+.+...+++
T Consensus 102 ~E~GspdtAAmaleKAak-------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK-------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHhCCcchHHHHHHHHHH-------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 888888888777776610 11223445555555544321 0 00011223344455666666666
Q ss_pred HHHHHHHHHHc----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhcCChHHHH
Q 043144 240 AMKLLDEMRNK----GCIPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSYG---CQPNVITHNIILRSMCSTGRWMDAE 311 (580)
Q Consensus 240 A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~ 311 (580)
|-..+..-... .--++ -..|-..|-.|....++..|...++.--+.+ -..+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 65544432211 00111 1234445555566667777777777643321 123344555555544 445554444
Q ss_pred H
Q 043144 312 R 312 (580)
Q Consensus 312 ~ 312 (580)
.
T Consensus 248 k 248 (308)
T KOG1585|consen 248 K 248 (308)
T ss_pred H
Confidence 3
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.17 E-value=0.37 Score=38.62 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLI 161 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 161 (580)
..+-.-.....+.|++.+|++.|+.+..+ .|. .......++.+|.+.|++++|...+++.++..+..-..-|-..+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34555667788889999999999998877 222 23456678888999999999999999998877433333455555
Q ss_pred HHHHhcC
Q 043144 162 SGYCRLG 168 (580)
Q Consensus 162 ~~~~~~g 168 (580)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 5544433
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.02 E-value=2 Score=36.88 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144 340 GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 419 (580)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 419 (580)
|-+.-|.-=|.+.+...++ -+.+||.+.-.+...|+++.|.+.|+...+.++.-+....|.-|. +.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 4444444444444443222 456778787778888888888888888877654433334444333 33457788887777
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 420 NQLSNKHC-SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 420 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
...-+.+. .|-...|..+.. ..-++.+|..-+.+--+ ..|..-|...+-.+.- |.+. ...+++++.... .
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-T 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-c
Confidence 66665541 232333433332 23455566544433221 2244445444333321 2211 123333333211 1
Q ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 499 PN-------VITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 499 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
.+ ..+|-.|..-+...|+.++|..+|+-.+..+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 12 3467777888888888888888888877553
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.99 E-value=0.23 Score=38.53 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVED 147 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 147 (580)
+...|+.+.|++.|.+++.. .|.....||.-..++.-+|+.++|+.=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444455555555444443 233344444444444444444444444444443
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.92 E-value=2.1 Score=36.86 Aligned_cols=28 Identities=21% Similarity=0.044 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 292 ITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
.||--+..-+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3444455555555555555555555443
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.90 E-value=1.7 Score=35.34 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 043144 121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSG 200 (580)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (580)
....++..+...+........++.+...+ +.++..++.++..|++.. .++.++.+.. ..+......+++.|.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcC
Confidence 34567777788889999999999999887 578889999999999764 4666677763 234556677888999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 043144 201 KLNLAMEVLHKQLEKECYPDVITYTILIEATCKE-SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK 268 (580)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (580)
-++++.-++.++-. +...+..+... ++++.|.+.+... .+...|..++..+..
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 99999888877532 33344555554 8899999988762 267788888887764
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.79 E-value=2.8 Score=37.29 Aligned_cols=222 Identities=18% Similarity=0.112 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043144 270 GRLDEAIKFLNDMPSYGCQ-PNVITHNIILRSMCSTGRWMDAERLLAEMVLK-GCSPSVVTFNILINFLCRKGLLGRAID 347 (580)
Q Consensus 270 g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 347 (580)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444444433211 02344455555555666666666655555431 112333444455555555555666666
Q ss_pred HHHHhhhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 348 ILEKMPKHGCTPNSLSYNPVLH-GFCKEKKMDRAIEYLEIMVSRGC--YPDIVTYNTLLTALCKDGKVDVAVEILNQLSN 424 (580)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (580)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555542221 111222222 45566666666666666543211 01222333333334555566666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144 425 KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLER 494 (580)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (580)
.........+..+...+...++++.|...+....... |+ ...+..+...+...+..+++...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4311124445555555556666666666666655432 22 23333333333345556666666665554
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.62 E-value=1.7 Score=34.05 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
.....+..+..+|+-+.--+++.++.+.+ .+++.....++.+|.+.|+..++.++++++-++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455556666666656666655432 55666666666666666666666666666666664
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.52 E-value=4.6 Score=39.64 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGLSREGKVDEAIKLFHDL 492 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (580)
.++-+.|+.++|.+.+.+|.+.... .+..+...|+.++...+.+.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3333445555555555555432111 11223344455555555555555555544
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.36 E-value=2.4 Score=34.80 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=39.9
Q ss_pred HHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144 433 TYNTVIDGL---SKVGKTEQAMKLLEEMRTKGLKPDTITYS-SLVGGLSREGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 433 ~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (580)
+.+.|+... .+.++.+++..++..+.-. +|...... .-...+...|++.+|.++|+++.+..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344444443 3677888888888888754 45443332 22345678888888888888876543
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.21 E-value=10 Score=41.41 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESM 110 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~ 110 (580)
....++.+++.+++.+|+.+.++-
T Consensus 680 VLa~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 680 VLAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566777777777777666553
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.15 E-value=0.61 Score=42.39 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 043144 466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT-----RSCKPTEATYT 540 (580)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 540 (580)
..++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445677788888888888888888888877654 777888888888888888888888887764 37777777777
Q ss_pred HHHHH
Q 043144 541 ILIEG 545 (580)
Q Consensus 541 ~l~~~ 545 (580)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
No 277
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.11 E-value=0.067 Score=30.87 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 043144 500 NVITYNSIMLGLCKARQTYRA 520 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A 520 (580)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444445544444
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.91 E-value=0.83 Score=41.55 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 043144 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER-----LGVRPNVITYN 505 (580)
Q Consensus 431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 505 (580)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5667788888889999999999999998875 55788899999999999999999999988754 57777776665
Q ss_pred HHHHH
Q 043144 506 SIMLG 510 (580)
Q Consensus 506 ~l~~~ 510 (580)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54443
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.72 E-value=5.8 Score=36.80 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=62.2
Q ss_pred HHcCChHHHHHHHHHHHhCC--CCCCh-----hhHHHHHHHHHhcC-ChHHHHHHHHHHHhC----C----CCCCH----
Q 043144 95 VRNGELEEGFKFLESMVYHG--DIPDI-----IPCTSLIRGFCKVG-KTRKATRVMEIVEDS----G----AVPDV---- 154 (580)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 154 (580)
.++|+++-|..++.++.... ..|+. ..+...+....+.+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888775532 12221 11222333344555 777777776654432 1 11222
Q ss_pred -HHHHHHHHHHHhcCChh---HHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144 155 -ITYNVLISGYCRLGEID---NALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK 215 (580)
Q Consensus 155 -~~~~~l~~~~~~~g~~~---~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (580)
.+...++.+|...+..+ +|..+++.+ ..+..+.++..-+.++.+.++.+.+.+++.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24445566666655543 344444444 22222344444555555566666666666666654
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.70 E-value=0.078 Score=30.60 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHH
Q 043144 151 VPDVITYNVLISGYCRLGEIDNAL 174 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~~~A~ 174 (580)
|.++..|+.++..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555555555555555555543
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.66 E-value=0.17 Score=29.61 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 538 TYTILIEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=3.9 Score=33.87 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=55.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHH--HHHHHHhCCCH
Q 043144 407 CKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI-TYSS--LVGGLSREGKV 482 (580)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~--l~~~~~~~g~~ 482 (580)
.+.+..++|+.-|..+.+.+...-+ ....-........|+...|...|++.-.....|-.. -... -...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445556666666666655422111 111122233445566666666666654432222211 0111 11233455556
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
+....-.+-+...+-.-....-..|..+-.+.|++..|...|+.+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555443222111223334555555566666666666655553
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.28 E-value=1.2 Score=39.86 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 043144 429 PVLITYNTVIDGLSK-----VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVIT 503 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 503 (580)
-|..+|...+..+.. .+..+--...++.|.+.|+.-|..+|+.|+..+-+..-.. ..+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nv--------------- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNV--------------- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHH---------------
Confidence 445566666665542 3445555555666666676667777766666554433221 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL 551 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+......|- .+-+=+++++++|...|+-||..+-..|+.++.+.|-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 2234477788888888888888888888888866553
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.26 E-value=12 Score=38.85 Aligned_cols=80 Identities=13% Similarity=-0.015 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA----RQTYRAIDILADMVTRSCKPTEATYTILIEGIA----YEGLA 552 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~ 552 (580)
+.+.+...+.+....| +......|...|... .+++.|...+......+ ......+...+. ... +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4555666666665544 444455555555443 35777777777776554 333333333221 122 5
Q ss_pred HHHHHHHHHHHhCCCC
Q 043144 553 KEALDLLNQLCSRGVV 568 (580)
Q Consensus 553 ~~A~~~~~~~~~~g~~ 568 (580)
..|.+++++..+.+..
T Consensus 526 ~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 526 HLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHHhcCch
Confidence 7777777777765543
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.08 E-value=0.25 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998855
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.03 E-value=1.7 Score=36.92 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT--ITYSSLVGGLSREGKVDEAIKLFHDL 492 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (580)
.+..+...|.+.|+.++|++.|.++.+....+.. ..+-.++......+++..+...+.++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555555555555555555544332221 23334444445555555555554444
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=1.8 Score=43.18 Aligned_cols=154 Identities=17% Similarity=0.146 Sum_probs=105.2
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDN 172 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 172 (580)
.+...|+++.|-.++.... ....+.++..+-++|-.++|+++- +|+.- -.....+.|+++.
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~i 655 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDI 655 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHH
Confidence 4455677777766544332 234566777788888888887663 22221 2334467889999
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 043144 173 ALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC 252 (580)
Q Consensus 173 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 252 (580)
|.++..+. .+..-|..|..+..+.+++..|.+.|....+ |..|+-++...|+-+.-..+-....+.|.
T Consensus 656 A~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 656 AFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 99888775 4567799999999999999999998877654 45667777777887766666666665542
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 253 IPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
.|.-.-+|...|+++++++++.+-.
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 2233345677899999988887653
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.87 E-value=3.8 Score=32.21 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=62.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcch---HHHHHHHHHhcCChhHHH
Q 043144 130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVT---YNTILRTLCDSGKLNLAM 206 (580)
Q Consensus 130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~ 206 (580)
.-.|..++..++..+...+. +..-+|-+|.-....-+-+-..++++.+|---|... ...++..|++.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s--- 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS--- 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH---
Confidence 44566777777777766543 344444444444444444555555555532233222 223444444433222
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 207 EVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
......+......|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 87 ---------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 ---------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 22223344455556666666666655432 13455555566666666666666666666665554
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=14 Score=38.50 Aligned_cols=170 Identities=10% Similarity=0.153 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY 164 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (580)
-.-++.+.+.+.+++|+...+..... .| -...+...+..+.-.|++++|....-.|.. .+...|..-+..+
T Consensus 360 ~Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f 433 (846)
T KOG2066|consen 360 EDHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKF 433 (846)
T ss_pred chhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHh
Confidence 34678899999999999887765432 22 234677888889999999999999888874 3566777777777
Q ss_pred HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
...++......++=.-+..-+...|..++..+.. .+. .-|.+.++. . +...|..+.-.-. ..
T Consensus 434 ~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-W--p~~Lys~l~iisa-------~~--- 495 (846)
T KOG2066|consen 434 AELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-W--PGHLYSVLTIISA-------TE--- 495 (846)
T ss_pred ccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-C--ChhhhhhhHHHhh-------cc---
Confidence 6666654433322111111245567777777766 222 223333332 1 2222322211100 01
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
.+..+. .. +...-..|+..|...++++.|+.++-.+.
T Consensus 496 ~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 496 PQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred hHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 111111 01 22233348888888888888888887766
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.78 E-value=9.8 Score=36.73 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP---NVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
...+|..++..+.+.|+++.|...+..+...+..+ .+.....-+......|+..+|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666667777777776666665433111 223333444555566666666666666554
No 291
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.69 E-value=15 Score=38.66 Aligned_cols=425 Identities=15% Similarity=0.123 Sum_probs=204.0
Q ss_pred HHHHHHHHHHh-CCCCCC--hhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCChhH
Q 043144 102 EGFKFLESMVY-HGDIPD--IIPCTSLIRGFC-KVGKTRKATRVMEIVEDSGAVPDVI-----TYNVLISGYCRLGEIDN 172 (580)
Q Consensus 102 ~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 172 (580)
-|++-++.+.+ ...+|. ..++..++..+. ...+++.|...+++....--.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45555555553 233332 345666666665 6677888888888765432122211 2234556666665544
Q ss_pred HHHHHHHc-----CCCCC--cchHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCCHhH
Q 043144 173 ALQVLERM-----SVAPD--VVTYNTI-LRTLCDSGKLNLAMEVLHKQLEKE---CYPDVITYTILIEATC--KESGVGQ 239 (580)
Q Consensus 173 A~~~~~~~-----~~~~~--~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~ 239 (580)
|+...++. ..+.. ...+..+ +..+...+++..|.+.++.+...- ..|....+..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 77777665 11111 1222233 222333468888888887776532 2233444444444433 4555666
Q ss_pred HHHHHHHHHHcC---------CCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHhhh-------CC----------CC---
Q 043144 240 AMKLLDEMRNKG---------CIPDVVTYNVLVNGI--CKEGRLDEAIKFLNDMPS-------YG----------CQ--- 288 (580)
Q Consensus 240 A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-------~~----------~~--- 288 (580)
+.+..+.+.... ..|...+|..+++.+ ...|+++.+...++++.+ .. ++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 666666653321 123455666666644 456776666655554321 10 00
Q ss_pred ----------CCHHH---------HHHHHHH--HHhcCChHHHHHHHHHHHHc--------CCCCC--------hhhHHH
Q 043144 289 ----------PNVIT---------HNIILRS--MCSTGRWMDAERLLAEMVLK--------GCSPS--------VVTFNI 331 (580)
Q Consensus 289 ----------~~~~~---------~~~ll~~--~~~~~~~~~a~~~~~~~~~~--------~~~~~--------~~~~~~ 331 (580)
+.... ..-++.+ .+..+..++|.+++++..+. ...++ ...|..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 11111 1111222 22334444555555444321 11111 112222
Q ss_pred HHHH---------HHhcCCHHHHHHHHHHhhhCCC-CCC-------HhhHHHHHHHHHhcCCHHHHHHHHH--------H
Q 043144 332 LINF---------LCRKGLLGRAIDILEKMPKHGC-TPN-------SLSYNPVLHGFCKEKKMDRAIEYLE--------I 386 (580)
Q Consensus 332 l~~~---------~~~~g~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~--------~ 386 (580)
.+.. .+-.+++..+...++.+.+... .|+ +..+....-.+...|+.+.|...|. .
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence 2222 2347889999999988876421 111 2222222333445799999999997 4
Q ss_pred HHHCCCCCCHHHHHHH--HHHHHhcC--ChHH--HHHHHHHHHhCC-CCC--CHHHHHHH-HHHHHhCC--CHHHHHHHH
Q 043144 387 MVSRGCYPDIVTYNTL--LTALCKDG--KVDV--AVEILNQLSNKH-CSP--VLITYNTV-IDGLSKVG--KTEQAMKLL 454 (580)
Q Consensus 387 ~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~--A~~~~~~~~~~~-~~~--~~~~~~~l-~~~~~~~g--~~~~A~~~~ 454 (580)
....+...+..++..+ +..+...+ +.++ +..+++.+.... -.| +..++..+ +.++.... ...++...+
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 4445444444444332 22222222 2333 777777765431 122 23334443 33333211 123444444
Q ss_pred HHHHH-----CCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CCCCHHHHH-----HHHHHHHhcCCHHHH
Q 043144 455 EEMRT-----KGL-KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG---VRPNVITYN-----SIMLGLCKARQTYRA 520 (580)
Q Consensus 455 ~~m~~-----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~-----~l~~~~~~~g~~~~A 520 (580)
.+..+ .+. .--..+++.+...+. .|+..+............ ++-....|. .+...+...|+.++|
T Consensus 518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 33222 110 111222333333334 788777666555543211 121344552 344557788999999
Q ss_pred HHHHHHHH
Q 043144 521 IDILADMV 528 (580)
Q Consensus 521 ~~~~~~~~ 528 (580)
.....+..
T Consensus 597 ~~~~~~~~ 604 (608)
T PF10345_consen 597 EEARQQLD 604 (608)
T ss_pred HHHHHHHH
Confidence 88877664
No 292
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.60 E-value=1.3 Score=39.69 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=74.6
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144 345 AIDILEKMPKHGCTPNSLSYNPVLHGFCK-----EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 419 (580)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 419 (580)
..+.|..+.- -+.|..+|-.++..+.. .+.++-....++.|.+-|+.-|..+|+.|+..+-+..-
T Consensus 53 ~e~~F~aa~~--~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEP--EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-------- 122 (406)
T ss_pred hhhhhhccCc--ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc--------
Confidence 3444544432 23477788888877764 35577777778888888888899999988887654321
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043144 420 NQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481 (580)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 481 (580)
.|. ..+....-.|- .+-+-+++++++|...|+.||.++-..|+.++.+.+.
T Consensus 123 --------iP~-nvfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 --------IPQ-NVFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred --------ccH-HHHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 121 11112221221 2234577888888888888888888888888877665
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.52 E-value=2.8 Score=35.54 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=67.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKPD----TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA 514 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 514 (580)
.-+...|++++|..-|...++...... ...|..-..++.+.+.++.|+.-..+.++.++. .......-+.+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 346678999999999999888753222 234455556778888999999988888887654 444555556788888
Q ss_pred CCHHHHHHHHHHHHHc
Q 043144 515 RQTYRAIDILADMVTR 530 (580)
Q Consensus 515 g~~~~A~~~~~~~~~~ 530 (580)
..+++|++-|+++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8899999999998876
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.46 E-value=12 Score=36.92 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144 327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390 (580)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 390 (580)
....+++..+.....+.-...++.+|+..| .+...+..++.+|... ..++-..+|+++.+.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 333444444444444444444444444432 1334444444444444 333444444444443
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.37 E-value=5.4 Score=32.80 Aligned_cols=18 Identities=22% Similarity=0.232 Sum_probs=7.9
Q ss_pred HHhcCChHHHHHHHHHHH
Q 043144 129 FCKVGKTRKATRVMEIVE 146 (580)
Q Consensus 129 ~~~~g~~~~A~~~~~~~~ 146 (580)
+...|++.+|..+|+.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 344444444444444443
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.31 E-value=0.37 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.123 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 538 TYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.|..++.++...|++++|++.+++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555555666666666666666655543
No 297
>PRK09687 putative lyase; Provisional
Probab=92.26 E-value=9.5 Score=35.34 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=24.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVS 389 (580)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 389 (580)
+..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+. +|+..+..+..
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 444444445555555542 3333333333321 1 123344445555553 35555555444
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.18 E-value=0.018 Score=47.35 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.++..+.++... ..-...++..+.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 356666677788888888888776655667777888888888877677776665211 1222345666666777
Q ss_pred hhHHHHHHHHcC
Q 043144 170 IDNALQVLERMS 181 (580)
Q Consensus 170 ~~~A~~~~~~~~ 181 (580)
+++|.-++.+++
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777777663
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.11 E-value=2.4 Score=36.07 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 366 PVLHGFCKEKKMDRAIEYLEIMVS 389 (580)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~~~~ 389 (580)
.+...|.+.|+.+.|++.|.++.+
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhh
Confidence 333444444444444444444433
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.97 E-value=6.4 Score=32.69 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=52.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhCCCHH
Q 043144 373 KEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI-TYNTV--IDGLSKVGKTE 448 (580)
Q Consensus 373 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~ 448 (580)
+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... -..-+ .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555444332221 12222333445555555555555554443222211 00011 11223455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER 494 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (580)
......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5554444443322122222233444455566666666666666553
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.92 E-value=0.44 Score=27.27 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 538 TYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+|..++.+|...|++++|...++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.74 E-value=6 Score=31.97 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=30.2
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144 443 KVGKTEQAMKLLEEMRTKGLKPDTITYS-SLVGGLSREGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (580)
..++++++..+++.|.-. .|+..-.. .-...+...|++.+|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 466777777777776643 33322211 12334566777777777777776543
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.69 E-value=20 Score=37.73 Aligned_cols=222 Identities=14% Similarity=0.193 Sum_probs=93.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh--
Q 043144 332 LINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC-YPDIVTYNTLLTALCK-- 408 (580)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~-- 408 (580)
....+.-.|+++.|++.+-+-. +...+.+.+...+..|.-.+-.+... ..++.... .|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 3455667899999999887611 12224444444443332222111111 33322111 1222567788888876
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCCHHHHH-----------HHHHH---HHHCCCC-CCHH---H
Q 043144 409 -DGKVDVAVEILNQLSNKHCSPVLITYNTVI-DGLSKVGKTEQAM-----------KLLEE---MRTKGLK-PDTI---T 468 (580)
Q Consensus 409 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-----------~~~~~---m~~~~~~-p~~~---~ 468 (580)
..+..+|.+++-.+.....+.....+..++ ......++++.-+ -++++ ++ ++. ++.. .
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~~~~~~~i 416 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDDEDFLREI 416 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSSSHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCcHHHHHHH
Confidence 357888888887776644222222222222 2222233222111 01111 11 112 1222 2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCC-----------HHHHHHHHHHHHHcC-----
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM-LGLCKARQ-----------TYRAIDILADMVTRS----- 531 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~-----------~~~A~~~~~~~~~~~----- 531 (580)
....+.-+...|++++|..+|.-+.+.+ .-....+.++ .+...... ...|..+.+.....+
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~ 494 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSK 494 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhh
Confidence 2334455678888998888888764321 1122233222 23332222 333444444332211
Q ss_pred C-CCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 043144 532 C-KPTEATYTILIEG-----IAYEGLAKEALDLLNQL 562 (580)
Q Consensus 532 ~-~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 562 (580)
+ .....|+..|... +.+.|++++|.+.++++
T Consensus 495 ~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 495 VSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 1 1123455554433 47899999998776655
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.50 E-value=12 Score=34.94 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhCCC---CCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--
Q 043144 343 GRAIDILEKMPKHGC---TPNSLSYNPVLHGFCKEKK----MDRAIEYLEIMVSRGCYPDIV--TYNTLLTALCKDGK-- 411 (580)
Q Consensus 343 ~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~-- 411 (580)
.++..+|+.|.+..+ .++..++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 455566666665422 1233334444332 2222 234455555555555443322 22222222211111
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHH
Q 043144 412 VDVAVEILNQLSNKHCSPVLITYN 435 (580)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~ 435 (580)
...+.++++.+.+.++++....|.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHcCCcccccccc
Confidence 234555555555555554444443
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=2.1 Score=42.71 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=101.1
Q ss_pred hcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144 166 RLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLD 245 (580)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (580)
-.|+++.|-.++..++ ....+.++..+.++|-.++|+++- +|... -.....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~----k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP----KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCc----hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHH
Confidence 3567777776555442 344567778888888888887652 23221 1234457788888888776
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144 246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS 325 (580)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (580)
+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|.
T Consensus 662 e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--- 723 (794)
T KOG0276|consen 662 EAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--- 723 (794)
T ss_pred hhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence 653 567899999999999999999999887664 44566667777777665565555555542
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144 326 VVTFNILINFLCRKGLLGRAIDILEKM 352 (580)
Q Consensus 326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (580)
.|...-+|...|+++++.+++..-
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHhc
Confidence 222334566789999988887653
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=21 Score=37.34 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=52.3
Q ss_pred HHHHHhcCChhHHHHHHHHc-CCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043144 161 ISGYCRLGEIDNALQVLERM-SVAPD---VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESG 236 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (580)
++.+.+.+.+++|+...+.. +..|. ...+...|..+.-.|++++|-...-.|... +..-|-..+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45556677777777777665 33332 234566666666677777776666665543 34444444444444443
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 043144 237 VGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK 268 (580)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (580)
...... -+.......+..+|..++..+..
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 332221 11211112344556665555554
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=39 Score=40.37 Aligned_cols=320 Identities=12% Similarity=0.064 Sum_probs=169.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 043144 191 TILRTLCDSGKLNLAMEVLHKQ----LEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGI 266 (580)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (580)
.+..+-.+.+.+..|+..++.- .+.. .....+..+...|...+++|...-+...-.. +...+. .|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 5556777888899999988873 2211 1223344445588889999888877764211 233333 33445
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHH
Q 043144 267 CKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNIL-INFLCRKGLLGRA 345 (580)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a 345 (580)
...|++..|...|+.+.+.+ ++...+++-++......+.+.......+..... ..+....++.+ ..+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999998875 445777887888888888888877766555443 12333333332 3334567777777
Q ss_pred HHHHHHhhhCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCh
Q 043144 346 IDILEKMPKHGCTPNSLSYNPV--LHGFCKEK--KMDRAIEYLEIMVSR--------GCYPD-IVTYNTLLTALCKDGKV 412 (580)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~--------~~~~~-~~~~~~li~~~~~~g~~ 412 (580)
...+. .. +..+|... +..+.+.. |.-.-.+..+.+.+. +..-+ ...|..++....-..-.
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 66655 22 33334333 22222222 211111222222211 01100 11233333322211111
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHhCCCHHHH
Q 043144 413 DVAVEILNQLS-NKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEE-MRTKGLKP-----DTITYSSLVGGLSREGKVDEA 485 (580)
Q Consensus 413 ~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A 485 (580)
... +.+.... ......+..-|..-+..-....+..+-+--+++ +......| -..+|...++.....|.++.|
T Consensus 1611 ~~~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1611 NSI-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHH-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111 0110000 001111122232222221111112222111221 11111122 246788888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
...+-.+.+.+ . +..+.-.+......|+...|+.++++.++.+
T Consensus 1690 ~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99988887755 2 3345566777889999999999999988653
No 308
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.35 E-value=28 Score=37.12 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=117.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHhhhC----CCCCCHhhHHH
Q 043144 299 RSMCSTGRWMDAERLLAEMVLKGCSPSV-------VTFNILIN-FLCRKGLLGRAIDILEKMPKH----GCTPNSLSYNP 366 (580)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ 366 (580)
.......++.+|..+..++...-..|+. ..|+.|-. .....|+++.|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3455678889998888887654212211 13333322 233578888888887766553 22334556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHHhcCC--hHHHHHHHHHHHhCCC------CCCHHH
Q 043144 367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVT---YNTLL--TALCKDGK--VDVAVEILNQLSNKHC------SPVLIT 433 (580)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~g~--~~~A~~~~~~~~~~~~------~~~~~~ 433 (580)
+..+..-.|++++|..+..+..+..-.-+... |..+. ..+...|. ..+....|........ .+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77788888999999888877654321223332 22222 23455663 2233333333332210 112233
Q ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCC----CCCHHHHHH
Q 043144 434 YNTVIDGLSK-VGKTEQAMKLLEEMRTKGLKPDTITY--SSLVGGLSREGKVDEAIKLFHDLERLGV----RPNVITYNS 506 (580)
Q Consensus 434 ~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~ 506 (580)
+..+..++.+ .+...++..-++--......|-...+ ..|+......|++++|...+.++..... .++...-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444444 11222222222222222222222222 3567778889999999999888864322 222222222
Q ss_pred HHHH--HHhcCCHHHHHHHHHH
Q 043144 507 IMLG--LCKARQTYRAIDILAD 526 (580)
Q Consensus 507 l~~~--~~~~g~~~~A~~~~~~ 526 (580)
.+.. -...|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 2346777777776655
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.13 E-value=16 Score=34.10 Aligned_cols=149 Identities=16% Similarity=0.247 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCC-
Q 043144 377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK--D----GKVDVAVEILNQLSNKHC---SPVLITYNTVIDGLSKVGK- 446 (580)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 446 (580)
+++.+.+++.+.+.|+.-+..++.+....... . .....|..+++.|++.+. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777777666555443333222 1 135667788888887662 2333444444332 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144 447 ---TEQAMKLLEEMRTKGLKPDTI--TYSSLVGGLSREGK--VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 447 ---~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 519 (580)
.+.+..+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+.+.++....|..++-.....+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 245677777777777665543 23333333222221 45778888888888888777777665543333333324
Q ss_pred HHHHHHHH
Q 043144 520 AIDILADM 527 (580)
Q Consensus 520 A~~~~~~~ 527 (580)
...-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44433333
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.21 E-value=21 Score=34.00 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144 416 VEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG 475 (580)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 475 (580)
+.+++++.+.+ +.+...+..++..+.+..+.+...+.++++.... +-+...|...+..
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 44445544443 2334444444555555555555555555555432 1134444444443
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.04 E-value=24 Score=34.55 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=74.2
Q ss_pred HHHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhH
Q 043144 128 GFCKVGKTRKATR-VMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNL 204 (580)
Q Consensus 128 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 204 (580)
-....||...|-+ ++..+......|+. .......+...|+++.+.+.+... -+.....+...+++...+.|++++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 3455677665554 44444433223333 333334455688888888887766 223445667778888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 043144 205 AMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 251 (580)
Q Consensus 205 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 251 (580)
|...-+-|+...++ +...........-..|-++++...++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888877776554 33333333333344567788888888876654
No 312
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.99 E-value=12 Score=31.18 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=16.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144 419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQA 450 (580)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 450 (580)
++.+.+.+++|+...+..+++.+.+.|++...
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33344444555555555555555555554433
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.84 E-value=11 Score=30.49 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=8.2
Q ss_pred HHhcCChhHHHHHHHHc
Q 043144 164 YCRLGEIDNALQVLERM 180 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~ 180 (580)
++..|++++|+.+|+++
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34444455555555444
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.68 E-value=1.5 Score=24.86 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.|..+..+|...|++++|++.+++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666667777777777777766653
No 315
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.55 E-value=1.1 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=12.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 542 LIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
|+.+|...|+.+.|+++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.40 E-value=0.81 Score=25.76 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 539 YTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+..++.++.+.|++++|.+.++++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555555666666666666666554
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.34 E-value=1.6 Score=24.78 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
+|..++.+|...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666654
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.32 E-value=25 Score=33.87 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP---VLITYNTVIDGLSKVGKTEQAMKLLEEMRT 459 (580)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (580)
...++..+...+.+.|.++.|...+..+....... .+...-.-+..+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578888888999999999999888887644211 344444556677778888999988888776
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.97 E-value=6.5 Score=33.72 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=47.1
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHH
Q 043144 477 SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR---SCKPTEATYTILIEGIAYEGLAK 553 (580)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 553 (580)
.+.|+ ++|.+.|-.+...+.-.++.....|+..|. ..+.++++.++-+.++. +-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666666655443345555555654444 46677777777766643 22456777777777777777777
Q ss_pred HHH
Q 043144 554 EAL 556 (580)
Q Consensus 554 ~A~ 556 (580)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.86 E-value=16 Score=31.21 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=67.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144 404 TALCKDGKVDVAVEILNQLSNKHCSPV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479 (580)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 479 (580)
.-+...|++++|..-|..+...-.+.. .+.|..-..++.+.+.++.|+.-..+.++.+. .....+..-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 347788999999999998887652211 23455556777888999999988888887641 1233344445678888
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 043144 480 GKVDEAIKLFHDLERLGV 497 (580)
Q Consensus 480 g~~~~A~~~~~~~~~~~~ 497 (580)
..+++|+.-|+++.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 889999999999987643
No 321
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.81 E-value=25 Score=34.57 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE 549 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
+||. .-.|...|++-.|.+.|.+.... +..++..|..|+++|...
T Consensus 338 lYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 338 LYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 3443 34677889999999988888865 577888999999888643
No 322
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.75 E-value=20 Score=32.14 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=30.9
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 96 RNGELEEGFKFLESMVYHGDIPDI---IPCTSLIRGFCKVGKTRKATRVMEIVE 146 (580)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (580)
+..++++|+.-|+..++....... .+...++..+.+.|++++....|.++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 445777788877777765211111 234456666777777777776666554
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.57 E-value=1.7 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 537 ATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677777888888888888888877654
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.56 E-value=6.5 Score=32.99 Aligned_cols=11 Identities=9% Similarity=-0.097 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 043144 467 ITYSSLVGGLS 477 (580)
Q Consensus 467 ~~~~~l~~~~~ 477 (580)
.++.++..++.
T Consensus 70 dAlw~lGnA~t 80 (186)
T PF06552_consen 70 DALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444555544
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.34 E-value=10 Score=28.31 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 484 EAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|..+++-...+. .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 455555555566666777777777777777777777777777666542 22222555444
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.29 E-value=4 Score=34.99 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=54.0
Q ss_pred HHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCH
Q 043144 164 YCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK---ECYPDVITYTILIEATCKESGV 237 (580)
Q Consensus 164 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 237 (580)
+.+.|+ +.|+..|-.+ +.-.++.....|+..|. ..+.++++.++..++.. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455677 6888888887 22233444455555554 67888899988888764 2256788899999999999999
Q ss_pred hHHH
Q 043144 238 GQAM 241 (580)
Q Consensus 238 ~~A~ 241 (580)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 327
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.15 E-value=16 Score=30.47 Aligned_cols=30 Identities=10% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDE 274 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (580)
+.+.+.+++|+...+..+++.+.+.|++..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 333444555555555555555555555433
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.87 E-value=1.8 Score=25.95 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 537 ATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.++..|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666543
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.86 E-value=1.9 Score=25.89 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 502 ITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
.+++.|...|...|++++|..++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888999998888888764
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.71 E-value=4.9 Score=29.60 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
+.=++.+-+..+......|++.+..+.+.+|.+.+++..|..+++-...+. ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 344566666677777777888888888888888888888888887766442 23444555554
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.49 E-value=30 Score=32.87 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=56.4
Q ss_pred CCCChhhHHHHHHHHHhcC------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--
Q 043144 115 DIPDIIPCTSLIRGFCKVG------------KTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-- 180 (580)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 180 (580)
.|.|..+|..++..--..- -.+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.++++
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556666666664322211 1344556677777664 566667777777777777777777777776
Q ss_pred CCCCCcchHHHHHHHHHh---cCChhHHHHHHHHHH
Q 043144 181 SVAPDVVTYNTILRTLCD---SGKLNLAMEVLHKQL 213 (580)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 213 (580)
..+.+...|...+..... .-.++....+|.+.+
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 333455666666655443 223455555555444
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.42 E-value=16 Score=32.25 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=58.8
Q ss_pred HHhCCCHHHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHHhcCCHHH-------HHHHHHHHHHcCCCC-----CHH
Q 043144 476 LSREGKVDEAIKLFHDLE----RLGVRPN--VITYNSIMLGLCKARQTYR-------AIDILADMVTRSCKP-----TEA 537 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~~~~-----~~~ 537 (580)
+.....+++|.+.+.-+. -.+.+|. ...+..+++.|...|+.+. |.+.|.+..+..-.| +..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 344555666666665542 1222333 3456667778887777444 455555555432221 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144 538 TYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK 570 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 570 (580)
....++....+.|+.++|.++|.+++..+-...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 556677888999999999999999988765554
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.22 E-value=6.2 Score=29.07 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 043144 448 EQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-RLGVRPNVITYNSIM 508 (580)
Q Consensus 448 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 508 (580)
-++.+-++.+....+.|++.+....+.+|.+.+++..|.++|+.+. +.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3556666666666778888888888888888888888888888776 3322 334555443
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.15 E-value=6 Score=34.24 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PNVITYNSIMLG 510 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 510 (580)
.+.-+..+.+.+...+|+...++-++.. +.|...-..++..++-.|++++|..-++-..+..+. +-...|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455677888999999999998887763 446667778899999999999999998888765443 234566666654
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.98 E-value=3.8 Score=37.89 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL 167 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (580)
.+-.+.|.++|.|++|+..|...+.. .|.+.+++..-..+|.+...|..|..=....+..+ ..-+..|..-+.+-...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 34455677788888888877777654 34466677777777777777776666555554432 11122333333333334
Q ss_pred CChhHHHHHHHHc-CCCCC
Q 043144 168 GEIDNALQVLERM-SVAPD 185 (580)
Q Consensus 168 g~~~~A~~~~~~~-~~~~~ 185 (580)
|..++|.+-++.+ ...|+
T Consensus 179 g~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHhhCcc
Confidence 4455555444444 33444
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.82 E-value=90 Score=37.66 Aligned_cols=322 Identities=14% Similarity=0.095 Sum_probs=165.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 043144 226 ILIEATCKESGVGQAMKLLDEMRNKGC--IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS 303 (580)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (580)
.+..+-.+++.+.+|...++.-..... ......+-.+...|..-+++|....+...-.. .|+ ....|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 344566678888888888877311100 11123344455588888888887777663111 222 2234445667
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH-HHHHhcCCHHHHHH
Q 043144 304 TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVL-HGFCKEKKMDRAIE 382 (580)
Q Consensus 304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~ 382 (580)
.|+|..|...|+.+.+.+ ++...+++.++......|.++..+-..+-.... ..+....++.+. .+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 888989999998888764 333566777777777777777777665554443 122233333322 23345566666555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhCCCHHHHH
Q 043144 383 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVD--VAVEILNQLSNKHCSP---------VLITYNTVIDGLSKVGKTEQAM 451 (580)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~ 451 (580)
... ..+ .+.+....++....+..+-| .-.+..+.+++.-+.| -...|..++....-..- .
T Consensus 1540 ~l~---~~n--~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el----~ 1610 (2382)
T KOG0890|consen 1540 YLS---DRN--IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL----E 1610 (2382)
T ss_pred hhh---ccc--ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH----H
Confidence 443 111 11111111222222221111 1112222222211000 01223333332221110 0
Q ss_pred HHHHHHHHCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHH-HhCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 043144 452 KLLEEMRTKGLKPD------TITYSSLVGGLSREGKVDEAIKLFHDL-ERLGVRP-----NVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 452 ~~~~~m~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 519 (580)
...+... +..++ ..-|..-+..-....+..+-+-.+++. .....+| -..+|...++.....|+++.
T Consensus 1611 ~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 0011110 11222 122222222222222223322233322 1221122 25678889999889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144 520 AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 569 (580)
|...+-.+.+.+ -+..+...+.-.+..|+...|..++++-.+.....
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999887777654 45667778888999999999999999999776544
No 337
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.67 E-value=40 Score=33.45 Aligned_cols=412 Identities=8% Similarity=0.007 Sum_probs=203.2
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144 83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVG-KTRKATRVMEIVEDSGAVPDVITYNVLI 161 (580)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 161 (580)
+...|...+.-+.+.+.+.+.-.+|.+|+.. .|.++..|..-..-...-+ +++.|+.+|.+.+... |.++..|....
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEYF 181 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHHH
Confidence 4568888888888888899999999999987 4556667766555444444 4999999999888765 55566665544
Q ss_pred HHHHhcCChhHHHHHHHHcCC-------------------CCCcch--HHH--H-HHHHHhcCChhHHH-HHHHHHHhCC
Q 043144 162 SGYCRLGEIDNALQVLERMSV-------------------APDVVT--YNT--I-LRTLCDSGKLNLAM-EVLHKQLEKE 216 (580)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~--~~~--l-~~~~~~~g~~~~A~-~~~~~~~~~~ 216 (580)
++-... .+++..-=+.++. .++... +.. + .....+.....+-. .+.+.+ ..+
T Consensus 182 rmEL~~--~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~-~~~ 258 (568)
T KOG2396|consen 182 RMELMY--AEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDL-QSK 258 (568)
T ss_pred HHHHHH--HHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 332110 0000000000100 011000 000 0 00000001111111 111111 122
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 043144 217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNI 296 (580)
Q Consensus 217 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 296 (580)
.+.++.+|..+ |.+.++-...- +.......-....-.-+.+....+|++..+. -|+...|..
T Consensus 259 ~~~np~~~~~l------------aqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~ 320 (568)
T KOG2396|consen 259 APDNPLLWDDL------------AQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWEC 320 (568)
T ss_pred CCCCCccHHHH------------HHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHH
Confidence 23334344332 22333222211 1111111111111112223333666665543 455556666
Q ss_pred HHHHHHhcC------ChHHHHHHHHHHHHcC-CC-CChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHhhHHHH
Q 043144 297 ILRSMCSTG------RWMDAERLLAEMVLKG-CS-PSVVTFNILINFLCRKGLL-GRAIDILEKMPKHGCTPNSLSYNPV 367 (580)
Q Consensus 297 ll~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l 367 (580)
.|..|...- .......+++...+.+ .. .....|..+.-.++..+.. +.|..+...... .+...|..-
T Consensus 321 YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~----~s~k~~~~k 396 (568)
T KOG2396|consen 321 YITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR----DSGKMWQLK 396 (568)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc----chHHHHHHH
Confidence 666554332 2333444555544432 12 2334555555555554443 333444333333 356666555
Q ss_pred HHHHHhcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHH--HHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 043144 368 LHGFCKEK-KMDRA-IEYLEIMVSRGCYPDIVTYNTLLTALCKDGK-VDVA--VEILNQLSNKHCSPVLI-TYNTVIDGL 441 (580)
Q Consensus 368 ~~~~~~~~-~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A--~~~~~~~~~~~~~~~~~-~~~~l~~~~ 441 (580)
+....... +++-- ..++......-..+-...|+... .|+ .+.. ..++....... .|+.. .-+.++..+
T Consensus 397 l~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~ 470 (568)
T KOG2396|consen 397 LQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWA 470 (568)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHH
Confidence 55544221 22211 12222222211112222333333 222 2211 12223333333 23333 346677888
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHH
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS--REGKVDEAIKLFHDLE-RLGVRPNVITYNSIMLGLCKARQTY 518 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 518 (580)
.+.|-..+|...+..+... .+|+...|..++..-. ..-++.-+..+++.+. ..| .|+..|-..+.--...|..+
T Consensus 471 ~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 471 YESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcc
Confidence 8899999999999998876 4677888877776432 1223777888999886 566 47777877766666888888
Q ss_pred HHHHHHHHHHHc
Q 043144 519 RAIDILADMVTR 530 (580)
Q Consensus 519 ~A~~~~~~~~~~ 530 (580)
.+-.++.++.+.
T Consensus 548 n~~~~~~ra~kt 559 (568)
T KOG2396|consen 548 NCGQIYWRAMKT 559 (568)
T ss_pred cccHHHHHHHHh
Confidence 888888777654
No 338
>PRK09687 putative lyase; Provisional
Probab=85.64 E-value=30 Score=32.07 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 394 PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG-KTEQAMKLLEEMRTKGLKPDTITYSSL 472 (580)
Q Consensus 394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l 472 (580)
++..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+.++++.+ ..+.+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 355555556666666665 4455555444442 33444444455555442 23455555555553 3455666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144 473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI 546 (580)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+.++.+.|+ +.|...+.+..+.+ + .....+.++...|.. +|...+.++.+. .||..+-...+++|
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 677777776 34555555555432 2 123455666666663 577777777654 34655555555544
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.59 E-value=3 Score=34.91 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144 203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK 250 (580)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 250 (580)
++|.+.|+++.+. .|+...|+.-+... .+|-++..++.+.
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 3444444444443 35555555555443 2344455555444
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.53 E-value=13 Score=27.83 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144 138 ATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 138 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
.++-++.+...+..|++.+..+.+.+|.+.+++..|.++|+.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555544
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.29 E-value=1.3 Score=23.56 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 043144 539 YTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666665554
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.19 E-value=30 Score=31.63 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCHHHH
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-----RLGVRPNVITY 504 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 504 (580)
++.....|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.+.+-++++. +.|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444555666677777777666666543 3455556666666666666555555555542 34555444433
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.82 E-value=9.2 Score=33.14 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA--VPDVITYNVLISG 163 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~ 163 (580)
+.+.-++.+.+.++..+|+...++-++. .|.|...-..++..|+-.|++++|..-++.+..... .+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455678889999999999999888776 456777778899999999999999988777665432 3445566666655
No 344
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.66 E-value=55 Score=34.18 Aligned_cols=25 Identities=36% Similarity=0.291 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCch
Q 043144 547 AYEGLAKEALDLLNQLCSRGVVKKS 571 (580)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~g~~~~~ 571 (580)
...|++.+|.+.+-.+.+.+..|..
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp -------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHH
Confidence 3446666666666666655544443
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=28 Score=30.71 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144 445 GKTEQAMKLLEEMRTK--GLKPDT---ITYSSLVGGLSREGKVDEAIKLFHDLERLGVR 498 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (580)
.+++.|+..|+..-+- |-..+. ..+.-+...-+..+++.+|.++|+++......
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666655331 111111 12223333445677788888888887655444
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.09 E-value=3.9 Score=37.82 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=64.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144 439 DGLSKVGKTEQAMKLLEEMRTKGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT 517 (580)
Q Consensus 439 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 517 (580)
.-|.+.|.+++|+.+|...+.. .| +.+++..-..+|.+...+..|+.-...+...+- .-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 4688999999999999987764 45 888888888899999999988888777765431 1233444444444445666
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 043144 518 YRAIDILADMVTRSCKPT 535 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~ 535 (580)
.+|.+-++..++. .|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 6666666666643 555
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.81 E-value=49 Score=32.95 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043144 292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGF 371 (580)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (580)
....+++..+..+-.+.-...+..+|+..| .+-..+..++++|... ..+.-..+++++.+..+. |.+.-..|...|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 334444444444444444555555555443 2334444555555444 334444455544444332 222222222222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCC
Q 043144 372 CKEKKMDRAIEYLEIMVSRGCY--PD---IVTYNTLLTALCKDGKVDVAVEILNQLSNKH-CSPVLITYNTVIDGLSKVG 445 (580)
Q Consensus 372 ~~~~~~~~A~~~~~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 445 (580)
-+ ++...+..+|.++..+-+. .+ -..|..+...- ..+.+....+...+.... ...-...+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 22 4444455555444432110 00 01222222211 223344444444443221 1122333444444555555
Q ss_pred CHHHHHHHHHHHHHC
Q 043144 446 KTEQAMKLLEEMRTK 460 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~ 460 (580)
++.+|++++..+.+.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 555665555555443
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.75 E-value=35 Score=31.23 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 043144 468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT-----RSCKPTEAT 538 (580)
Q Consensus 468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 538 (580)
+++.....|..+|.+.+|.++.++....++ .+...+..++..+...|+--.|.+.++++.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 355667889999999999999999988764 3778888999999999998888888877753 255555443
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.41 E-value=2.5 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+..++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666777778888888888777765
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.41 E-value=34 Score=30.81 Aligned_cols=251 Identities=13% Similarity=0.154 Sum_probs=125.1
Q ss_pred cCCHhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC--CCCHHHHHHHHHHHHhcC
Q 043144 234 ESGVGQAMKLLDEMRNKGCIPD---VVTYNVLVNGICKEGRLDEAIKFLNDMPSY---GC--QPNVITHNIILRSMCSTG 305 (580)
Q Consensus 234 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~~ 305 (580)
....++|+.-|++.++...... -.....++..+.+.|++++..+.|.++... .+ .-+..+.++++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456667766766665421111 123344566777777777777777665421 11 123445566665555555
Q ss_pred ChHHHHHHHHHHHHc-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----------CCHhhHHHHHH
Q 043144 306 RWMDAERLLAEMVLK-GCSPSV----VTFNILINFLCRKGLLGRAIDILEKMPKHGCT-----------PNSLSYNPVLH 369 (580)
Q Consensus 306 ~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~ 369 (580)
+.+--..+|+.-+.. .-..+. .+-..|...|...+++.+..+++.++.+.-.. .-...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 544444444432221 000111 12345677777778888877777777543111 11345666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HHhcCChHHHHH-HHHHHHhCC--CCCCHHH---HHHH
Q 043144 370 GFCKEKKMDRAIEYLEIMVSRG-CYPDIVTYNTLLTA-----LCKDGKVDVAVE-ILNQLSNKH--CSPVLIT---YNTV 437 (580)
Q Consensus 370 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~-----~~~~g~~~~A~~-~~~~~~~~~--~~~~~~~---~~~l 437 (580)
.|...++-.+...+|++.+.-. .-|.+.. ..+|.- ..+.|.+++|.. +|+.+...+ ..|...+ |..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 7877777777778888765422 1233332 233333 346677877754 444444322 1232222 3444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTKGL--KPDTITYSSLVGGLSREGKVDEAIKLFHD 491 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (580)
...+.+.|-- -|+.-..+.. .|.....+.++.+|... ++.+-.+++..
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 4444444310 0100001111 34445567777777544 44444444443
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.29 E-value=6.6 Score=35.96 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144 356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG---CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI 432 (580)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (580)
|.+....+...++..-....+++.+...+-++.... ..|+. +-...+..+. .-+.++++.++..-.+.|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 334455555556555555667777777776665431 01111 1122222222 235567777777777777778888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144 433 TYNTVIDGLSKVGKTEQAMKLLEEMRTK 460 (580)
Q Consensus 433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 460 (580)
+++.+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888887777777666544
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=34 Score=30.20 Aligned_cols=21 Identities=5% Similarity=0.105 Sum_probs=13.2
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 043144 301 MCSTGRWMDAERLLAEMVLKG 321 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~~~ 321 (580)
-+..+++.+|+.+|+++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777766553
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.42 E-value=9.1 Score=35.12 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 043144 149 GAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVV-----TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVIT 223 (580)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 223 (580)
|.+..+.+...++..-.+..+++.+...+-++...|+.. +-...++.+.+ -++++++.++..-++-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 444455555555555555667777777766663333321 12233333333 345577777777777788888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144 224 YTILIEATCKESGVGQAMKLLDEMRNK 250 (580)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 250 (580)
++.+++.+.+.+++.+|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888877777666544
No 354
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.27 E-value=4.4 Score=22.89 Aligned_cols=29 Identities=7% Similarity=-0.004 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 502 ITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.+|..+...|...|++++|.+.|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667778888888888888888887754
No 355
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.06 E-value=69 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=9.4
Q ss_pred HHHHHHHcCChHHHHHHH
Q 043144 90 HLRRLVRNGELEEGFKFL 107 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~ 107 (580)
.+..+.-.|.+++|.+++
T Consensus 154 ~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 154 YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 455555555555555555
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.77 E-value=2.3 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=6.3
Q ss_pred HHHHHhcCChhHHHHH
Q 043144 161 ISGYCRLGEIDNALQV 176 (580)
Q Consensus 161 ~~~~~~~g~~~~A~~~ 176 (580)
...+...|++++|..+
T Consensus 8 a~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 8 ARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3333334444444333
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.58 E-value=75 Score=33.51 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=38.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHh---
Q 043144 263 VNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG-CSPSVVTFNILINFLCR--- 338 (580)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 338 (580)
...+.-.|++|.|++.+-+.. ....+.+.+...+..| |-+.-....-..++... -.+...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 345566888999988887721 1133444444333322 22222111112332221 01112557778888876
Q ss_pred cCCHHHHHHHHHHhhhC
Q 043144 339 KGLLGRAIDILEKMPKH 355 (580)
Q Consensus 339 ~g~~~~a~~~~~~~~~~ 355 (580)
..+...|.+++-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45778888888766654
No 358
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.30 E-value=1 Score=36.76 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhH
Q 043144 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNL 204 (580)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (580)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHHH
Confidence 456677788888888999999877656778889999999999988888888887442 1333456667777777777
Q ss_pred HHHHHHH
Q 043144 205 AMEVLHK 211 (580)
Q Consensus 205 A~~~~~~ 211 (580)
|.-++.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 6666554
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.14 E-value=34 Score=29.29 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144 370 GFCKEKKMDRAIEYLEIMVSRGCYPDIV-----TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV 444 (580)
Q Consensus 370 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 444 (580)
.+...+++++|...++..+.. |... +-..|.......|.+|+|+..++.....+ ........-.+++...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHc
Confidence 344455555555555544432 1111 11223333444555555555555444332 1111222233444455
Q ss_pred CCHHHHHHHHHHHHHC
Q 043144 445 GKTEQAMKLLEEMRTK 460 (580)
Q Consensus 445 g~~~~A~~~~~~m~~~ 460 (580)
|+-++|..-|+..+..
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 5555555555554443
No 360
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.54 E-value=50 Score=30.82 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 043144 239 QAMKLLDEMRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 286 (580)
.|...|..+-..+ +......+...|.. ..+.++|..+|....+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555443 23333333333322 224555555555555544
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.50 E-value=11 Score=37.87 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=47.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHH
Q 043144 131 KVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEV 208 (580)
Q Consensus 131 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (580)
..|+...|...+.......+...-+....|.....+.|-...|-.++.+. . ....+.++..+++++....+++.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45666666666665544332222223333555555555555666555544 1 123345566666777777777777777
Q ss_pred HHHHHhCC
Q 043144 209 LHKQLEKE 216 (580)
Q Consensus 209 ~~~~~~~~ 216 (580)
|+.+++..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 77766653
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.21 E-value=57 Score=32.28 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=19.8
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
.|...|+.-.|.+.|.+.... +..++..|..|..+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 445555666666666555432 2335555655555554
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.30 E-value=5 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=15.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC
Q 043144 89 NHLRRLVRNGELEEGFKFLESMVYH 113 (580)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (580)
.+..+|...|+.+.|..++++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3556666666666666666666544
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.19 E-value=33 Score=31.17 Aligned_cols=87 Identities=7% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043144 438 IDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK---- 513 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 513 (580)
|++++..+++.+++...-+--+..-+....+....|-.|.+.|....+.++-..-....-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6778888888887766544332211223455666677788888888888877776643222234447766666654
Q ss_pred -cCCHHHHHHHH
Q 043144 514 -ARQTYRAIDIL 524 (580)
Q Consensus 514 -~g~~~~A~~~~ 524 (580)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 68888887776
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.97 E-value=28 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=25.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
.+...|+|++|..+.+.. ..||...|.+| +-.+.|..+++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 344556666665554443 24555555444 2335555555555555554443
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.96 E-value=7.1 Score=20.87 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 539 YTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|..++..+...|+++.|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555555555555555555544
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.91 E-value=43 Score=26.73 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 465 DTITYSSLVGGLSREG---KVDEAIKLFHDLER-LGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+..+--.+..++.+.. ++.+.+.+++++.+ ..+.........|.-++.+.|+|++++++.+.+++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3333334444444433 24455556665553 222212223333444556666666666666666544
No 368
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.66 E-value=39 Score=25.60 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
||...|.+| +-.+.|--+++...+.++.
T Consensus 69 pdL~p~~AL--~a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 69 PDLEPWAAL--CAWKLGLASALESRLTRLA 96 (116)
T ss_dssp GGGHHHHHH--HHHHCT-HHHHHHHHHHHC
T ss_pred ccHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 444444333 2234444444444444443
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.58 E-value=58 Score=29.72 Aligned_cols=87 Identities=6% Similarity=0.062 Sum_probs=46.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 043144 263 VNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR---- 338 (580)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 338 (580)
|++++..+++.+++...-+--+..-+-.......-|-.|.+.++...+.++-...+...-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566667777776654433322111112233334444566777777777666666654222233346565555543
Q ss_pred -cCCHHHHHHHH
Q 043144 339 -KGLLGRAIDIL 349 (580)
Q Consensus 339 -~g~~~~a~~~~ 349 (580)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56677776665
No 370
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.04 E-value=8.8 Score=37.49 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=78.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE 169 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 169 (580)
-+..+...+.++.|..++.+++.. .+..+..|..-..++.+.+++..|+.=+...++.. |.-...|..-+.++...+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l-dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL-DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc-CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 355667778999999999999986 33344455555577899999999998887777765 4445556666677777788
Q ss_pred hhHHHHHHHHc-CCCCCcchHHHHHHHHHh
Q 043144 170 IDNALQVLERM-SVAPDVVTYNTILRTLCD 198 (580)
Q Consensus 170 ~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 198 (580)
+.+|+..|+.. .+.|+..-...++.-|-+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 88888888887 667877777777665544
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.71 E-value=40 Score=25.24 Aligned_cols=79 Identities=19% Similarity=0.133 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQ 561 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.++|..+-+-+...+-. ...+-..-+..+...|+|++|..+.+.. ..||...|..| +-.+.|-.+.+..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 45666666655543211 1111122234567899999999988776 38899999887 45788888888888888
Q ss_pred HHhCCC
Q 043144 562 LCSRGV 567 (580)
Q Consensus 562 ~~~~g~ 567 (580)
|...|-
T Consensus 94 la~sg~ 99 (115)
T TIGR02508 94 LAASGD 99 (115)
T ss_pred HHhCCC
Confidence 888774
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.42 E-value=17 Score=25.78 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 043144 513 KARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDL 558 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
...+.++|+..|+..++.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665422211 12334455555666666665554
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.89 E-value=16 Score=36.80 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=42.1
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144 478 REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD 557 (580)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
..|+...|...+..+....+....+....|+....+.|....|-.++.+.+.-. ...+-++..+++++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555554432222222233344444445555555555555544432 3334455555555555555555555
Q ss_pred HHHHHHhCC
Q 043144 558 LLNQLCSRG 566 (580)
Q Consensus 558 ~~~~~~~~g 566 (580)
.|+.+.+..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 555555544
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.55 E-value=79 Score=28.19 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=40.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHH
Q 043144 406 LCKDGKVDVAVEILNQLSNKHCSPVLIT-YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT-YSSLVGGLSREGKVD 483 (580)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~ 483 (580)
|.....++.|+..+.+....+ |+..+ |..-+..+.+..+++.+..--.+.++ +.||..- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 334445666666555555443 44432 33444455555555555554444443 2344332 222333444555566
Q ss_pred HHHHHHHHH
Q 043144 484 EAIKLFHDL 492 (580)
Q Consensus 484 ~A~~~~~~~ 492 (580)
+|+..+.++
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666665
No 375
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.35 E-value=84 Score=28.45 Aligned_cols=91 Identities=7% Similarity=0.054 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY-RAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
+.+-++.++++.+..++ |...|..--......|++. +-+++.+.|+.. -..+-..|..--.++..-+.++.=..+..
T Consensus 94 L~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 44455555555554444 5555543333333444544 555556666542 23445555555555555566666666666
Q ss_pred HHHhCCCCCchhHH
Q 043144 561 QLCSRGVVKKSSAE 574 (580)
Q Consensus 561 ~~~~~g~~~~~~~~ 574 (580)
++++.++..++.+.
T Consensus 172 ~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWN 185 (318)
T ss_pred HHHHHhhhccchhh
Confidence 66666555555443
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.44 E-value=16 Score=25.88 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChHHHHHH
Q 043144 373 KEKKMDRAIEYLEIMVSRGCYPD-IV-TYNTLLTALCKDGKVDVAVEI 418 (580)
Q Consensus 373 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~ 418 (580)
...+.++|+..|+..++.-..+. -+ ++..++.+|+.-|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554322211 11 444555555555555554443
No 377
>PRK10941 hypothetical protein; Provisional
Probab=69.42 E-value=48 Score=30.47 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
.+.+-.+|.+.++++.|+++.+.+....+. ++.-+.--+..|.+.|.+..|..=++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445555677788888888888887776544 5555665666777888888888777777765
No 378
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.13 E-value=15 Score=24.66 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 043144 505 NSIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
..++.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555555444443
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.71 E-value=1e+02 Score=28.74 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=8.1
Q ss_pred cCChhHHHHHHHHc
Q 043144 167 LGEIDNALQVLERM 180 (580)
Q Consensus 167 ~g~~~~A~~~~~~~ 180 (580)
.+++..+...+...
T Consensus 54 ~~~~~~a~~~~~~a 67 (292)
T COG0790 54 PPDYAKALKSYEKA 67 (292)
T ss_pred cccHHHHHHHHHHh
Confidence 45555666666555
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.38 E-value=60 Score=25.97 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144 498 RPNVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCSRGV 567 (580)
Q Consensus 498 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 567 (580)
.++..+--.+.+++.+..+ ..+.+.++++..+.. +|+ ......|+-++.+.|+++.++++.+.+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4566666778888888765 566778999988632 333 34566777789999999999999999988653
No 381
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.21 E-value=87 Score=27.81 Aligned_cols=138 Identities=14% Similarity=0.262 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 478 (580)
....+..|...-++.-|....+++. .| ..+ .+.+--|.+..+.+--.++.+-....+++-+..-+..++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIi----EP-IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKII----EP-IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhh----hh-HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 3445555665555554444333321 22 222 222333455555444445555445555555555555443 567
Q ss_pred CCCHHHHHHHHHHHHh-CC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144 479 EGKVDEAIKLFHDLER-LG-----------VRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI 546 (580)
Q Consensus 479 ~g~~~~A~~~~~~~~~-~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
.|+..+|+..++.-.. .| -.|++.....++..|. .+++++|.+.+.++.+.|+.|... ...+.+++
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 8999999998887643 11 1467777777776654 478999999999988888776533 34444444
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.82 E-value=1e+02 Score=30.13 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=35.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHH--HhcCChHHHHHHHHHHHhC
Q 043144 91 LRRLVRNGELEEGFKFLESMVYHGDIPDII--PCTSLIRGF--CKVGKTRKATRVMEIVEDS 148 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 148 (580)
+..+...++|..|.++|+.+... .+++.. .+..+..+| ...-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455777888888888887776 444443 334444444 3455667777777776654
No 383
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.52 E-value=39 Score=25.01 Aligned_cols=24 Identities=8% Similarity=-0.009 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 507 IMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
++..+...|++++|...+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444455566666666666666543
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.44 E-value=89 Score=27.87 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHH
Q 043144 117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTL 196 (580)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 196 (580)
|....-..-.-.+...+++++|.+++ ..+...+.-...++.++...|+.+.|+.+++.++.+.....-..+....
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA 150 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hcCCHhHHHHH
Q 043144 197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC----KESGVGQAMKL 243 (580)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~ 243 (580)
..++.+.+|...-+...+.. ....+..++..+. +.+..++-..+
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 385
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=1e+02 Score=28.17 Aligned_cols=211 Identities=13% Similarity=0.153 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144 87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCT-------SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV 159 (580)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 159 (580)
..++.+...+.+++++|+..+.+.+..|...|..+.+ -+...|...|+...-.+......+
T Consensus 6 sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre------------ 73 (421)
T COG5159 6 SLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE------------ 73 (421)
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH------------
Confidence 3678888999999999999999999998887765433 345556666666554444322221
Q ss_pred HHHHHHhcCChhHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHh
Q 043144 160 LISGYCRLGEIDNALQVLERMSVAPDVV-TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVG 238 (580)
Q Consensus 160 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 238 (580)
++.-+.+..-..-.+.++++.+..+|.. .--.+...+. +.|..--+.+++ ...-.-++..+.+.|++.
T Consensus 74 ~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i-----ewA~rEkr~fLr------~~Le~Kli~l~y~~~~Ys 142 (421)
T COG5159 74 AMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI-----EWADREKRKFLR------LELECKLIYLLYKTGKYS 142 (421)
T ss_pred HHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-----HHHHHHHHHHHH------HHHHHHHHHHHHhcccHH
Confidence 1111111111222233444443223321 1111111111 111111112221 112245777888888888
Q ss_pred HHHHHHHHH----HHcCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHhhh----CCCCCCHHHHHHHHHH--HHhcCCh
Q 043144 239 QAMKLLDEM----RNKGCIPDVVTYNVLV-NGICKEGRLDEAIKFLNDMPS----YGCQPNVITHNIILRS--MCSTGRW 307 (580)
Q Consensus 239 ~A~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ll~~--~~~~~~~ 307 (580)
+|+.+...+ .+.+-+++..+...+= .+|-+-.++.++..-+...+. .-++|-...-.-++.+ .|...++
T Consensus 143 dalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dy 222 (421)
T COG5159 143 DALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDY 222 (421)
T ss_pred HHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccc
Confidence 888765544 3334444444433222 244444444444443333221 1124433333334443 3455667
Q ss_pred HHHHHHHHHHHHc
Q 043144 308 MDAERLLAEMVLK 320 (580)
Q Consensus 308 ~~a~~~~~~~~~~ 320 (580)
.-|..+|-+..+.
T Consensus 223 ktA~SYF~Ea~Eg 235 (421)
T COG5159 223 KTASSYFIEALEG 235 (421)
T ss_pred hhHHHHHHHHHhc
Confidence 7787777776653
No 386
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.60 E-value=1.3e+02 Score=29.19 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHH
Q 043144 369 HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC-KDGKVDVAVEILNQL 422 (580)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 422 (580)
..+.+.|-+..|+++.+-+...++.-|+.....+|+.|+ +.++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 344445555555555555554443334444444444432 334444444444443
No 387
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.32 E-value=1.9e+02 Score=30.99 Aligned_cols=398 Identities=13% Similarity=0.022 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 043144 151 VPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTL---CDSGKLNLAMEVLHKQLEKECYPDVITYT 225 (580)
Q Consensus 151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (580)
.-+...+..||..+...|++++...--..| . .+.++..|...+... ...+...++...|++.+... .++..|.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~ 187 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWE 187 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHH
Confidence 345566777888888888877655444444 1 133445565555433 34567777778887777653 2444555
Q ss_pred HHHHHHHh-------cCCHhHHHHHHHHHHHc-CCCC--CHhHHHHHH---HHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 043144 226 ILIEATCK-------ESGVGQAMKLLDEMRNK-GCIP--DVVTYNVLV---NGICKEGRLDEAIKFLNDMPSYGCQPNVI 292 (580)
Q Consensus 226 ~li~~~~~-------~g~~~~A~~~~~~~~~~-~~~~--~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 292 (580)
-.+..... .++++..+.+|.+.+.. |... -...|..+. ..|..+-..++...+|..-...+ -|..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhh
Confidence 55555443 24566677777776543 2111 122232222 23334444455555555544432 2222
Q ss_pred HHHHHHHHHH-------hcCChHHHHHHHHH-------HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144 293 THNIILRSMC-------STGRWMDAERLLAE-------MVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT 358 (580)
Q Consensus 293 ~~~~ll~~~~-------~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (580)
+-..-+.--. ...+++.+.+-+.. .... .++-...|..+++.+...|+.-....+++++......
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~ 344 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVL 344 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccc
Confidence 1111111111 11122222222111 1111 1222234455555555566655555555555443111
Q ss_pred CCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHH
Q 043144 359 PNSLSYNPVLHGFC-KEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV-DVAVEILNQLSNKHCSPVLITYNT 436 (580)
Q Consensus 359 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ 436 (580)
+...|.......- ..+-.+.+...+....+. +.....+|..-+-++.+.+.. ..-...|......+ ...++.
T Consensus 345 -~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~----~~l~~~ 418 (881)
T KOG0128|consen 345 -DRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT----VELHND 418 (881)
T ss_pred -cHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH----HHHHHH
Confidence 2222211110000 011122233333332222 111222333333333333321 11222222222211 112222
Q ss_pred HHHHHHhCCC-------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCCHH
Q 043144 437 VIDGLSKVGK-------------TEQAMKLLEEMRTKGLKPDTITYSSLVGGL-SREGKVDEAIKLFHDLERLGVRPNVI 502 (580)
Q Consensus 437 l~~~~~~~g~-------------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~ 502 (580)
......++++ +..|...|.........+...+........ .-.++++.+..+++.+...+.. +..
T Consensus 419 ~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~ia 497 (881)
T KOG0128|consen 419 YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIA 497 (881)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHH
Confidence 2222222332 223333333333221122222233333322 3567788888888887765533 433
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 503 -TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTE--ATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 503 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
.|...+..-...|+.+.++.+++.....-..|+. .++..+.+.-...|.++.......
T Consensus 498 g~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 498 GKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 5666666666678888888877777765444542 233333333455566666544443
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.18 E-value=92 Score=30.48 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hCCCHHHHHHHHHHHHHC
Q 043144 405 ALCKDGKVDVAVEILNQLSNKHCSPVLI--TYNTVIDGLS--KVGKTEQAMKLLEEMRTK 460 (580)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 460 (580)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455788899999999988876 444443 4455555554 567788888888887654
No 389
>PRK10941 hypothetical protein; Provisional
Probab=65.72 E-value=1.1e+02 Score=28.12 Aligned_cols=62 Identities=11% Similarity=-0.036 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG 496 (580)
Q Consensus 434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (580)
.+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 4556666777777777777777777653 3344445555556777777777777777776543
No 390
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.45 E-value=53 Score=25.79 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493 (580)
Q Consensus 449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 493 (580)
+..+-++.+...++.|++.....-+.+|.+.+++..|.++|+-+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444555555566666666666666666666666666666554
No 391
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.38 E-value=1e+02 Score=27.53 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=34.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043144 97 NGELEEGFKFLESMVYHGDIPDI-IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ 175 (580)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 175 (580)
...++.|+.-|.+++.. .|.. .-|..-+-++.+..+++.+..=-.+..+.. +..+.....++.+......+++|+.
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHHH
Confidence 33455555555555443 2222 233333444455555554444333333322 2222233334444444445555555
Q ss_pred HHHHc
Q 043144 176 VLERM 180 (580)
Q Consensus 176 ~~~~~ 180 (580)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 54443
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.21 E-value=1.9e+02 Score=30.69 Aligned_cols=75 Identities=8% Similarity=-0.057 Sum_probs=38.8
Q ss_pred HHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043144 160 LISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGV 237 (580)
Q Consensus 160 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (580)
....+.+.+++...+..+..- +.+.........+....|+.++|.+..+.+-..|. .....+..++..+.+.|.+
T Consensus 105 ~l~~La~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHccCHHHHHHhcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 344445566666655522221 33444445556666667776666666555544442 2344555555555544443
No 393
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.10 E-value=1.2e+02 Score=28.91 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHH
Q 043144 82 FEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD---VITYN 158 (580)
Q Consensus 82 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 158 (580)
+++.....++.-++...+-+... +..... ..+++.+..++.+.+......+...+....-.+.+ .....
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr-~as~~f-------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~ 144 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLR-LASEIF-------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHA 144 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHh-hHHHHH-------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHH
Confidence 44455566666666665533222 221111 12445555555555555554444333332211111 12233
Q ss_pred HHHHHHHhcCChhHHHHH
Q 043144 159 VLISGYCRLGEIDNALQV 176 (580)
Q Consensus 159 ~l~~~~~~~g~~~~A~~~ 176 (580)
.++..+.+.+++.-++..
T Consensus 145 ~l~~~~L~ak~y~~~~p~ 162 (422)
T KOG2582|consen 145 DLLQLCLEAKDYASVLPY 162 (422)
T ss_pred HHHHHHHHhhcccccCCc
Confidence 344555555555444443
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.91 E-value=45 Score=26.17 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 484 EAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
+..+-+......++.|++.....-+.+|.+.+++..|..+++-...+ +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 45566666677788889999999999999999999999999887765 244444454443
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.11 E-value=8.5 Score=30.40 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=24.1
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRG 128 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (580)
.+...|.-.+|-.+|..|+..|.|||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 555567777788888888888877775 6666543
No 396
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.69 E-value=59 Score=23.90 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHH
Q 043144 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP-TEATYTILIEGIAYEGLAK-EALDLLNQ 561 (580)
Q Consensus 500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 561 (580)
|...-..+...+...|++++|++.+-++++..-.. +...-..++..+...|.-+ .+.++-++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 55666667777777777777777777776543222 3444556666666556533 33333333
No 397
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=88 Score=32.23 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=49.0
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043144 478 REGKVDEAIKLFHDLERLGVRPN-----VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLA 552 (580)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
+..++..+.+.|..-...-+..+ ......|.-+|....+.+.|.++++++.+.. +.++-+-..+..+....|+.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcch
Confidence 44455666666555433211110 2234555566666667777777777766542 33444445555566666777
Q ss_pred HHHHHHHHHHHhCCC
Q 043144 553 KEALDLLNQLCSRGV 567 (580)
Q Consensus 553 ~~A~~~~~~~~~~g~ 567 (580)
++|...+......-.
T Consensus 445 e~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 445 EEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHHHHhhhc
Confidence 777776666655433
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.69 E-value=1.3e+02 Score=27.69 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--C--CCCCcchHHHHHHHHHh-cCChhHHHHHHH
Q 043144 136 RKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--S--VAPDVVTYNTILRTLCD-SGKLNLAMEVLH 210 (580)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 210 (580)
++-...++-+...-......-|..|+ .+.....+|+.+|+.. . +-.|..+...+++.... .+.--.|.--+-
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHHhCC--CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH-----h
Q 043144 211 KQLEKE--CYPDVITYTILIEATCKESGVGQAMKLLDEMRNK-GCIPDVVTYNVLVNGICKEGRLDEAIKFLND-----M 282 (580)
Q Consensus 211 ~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~ 282 (580)
..+... ..++..+...++..++..+++.+-.++++..... +...|...|..+|..-.+.|+..-...+.++ +
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwi 269 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWI 269 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEe
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcC
Q 043144 283 PSYGCQPNVITHNIILRSMCSTG 305 (580)
Q Consensus 283 ~~~~~~~~~~~~~~ll~~~~~~~ 305 (580)
.+.++..+...-..+-..+...+
T Consensus 270 kR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 270 KRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred eecCCcCCHHHHHHHHHHHHhcC
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.86 E-value=7.5 Score=36.19 Aligned_cols=120 Identities=14% Similarity=0.029 Sum_probs=74.2
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI 521 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 521 (580)
...|.++.|++.|...+..+ ++....|..-..++.+.+....|++-+....+.++. ...-|-.-..+....|.|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 45677888888888777764 445566666666777778888888877777765433 2333333344555678888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144 522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
..+....+.++.+....| +-...-..++.++=...+++..+.
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 888888776554444433 333444445555544445444443
No 400
>PF15469 Sec5: Exocyst complex component Sec5
Probab=60.65 E-value=1.1e+02 Score=26.20 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=59.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 043144 442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYR 519 (580)
Q Consensus 442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 519 (580)
.+......++.++++..-. ..+-.-+.-+...|+++.+...|.++...--.. ....+..+ +.+
T Consensus 68 ~k~~~l~~~l~~l~r~~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v---------~~e 132 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRFL------FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV---------WSE 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHH
Confidence 3444445555555554321 112234567778899998888888876421111 22233222 122
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHH
Q 043144 520 AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVA 577 (580)
Q Consensus 520 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~ 577 (580)
+..+..++.. ..|..|... ....++..++++.+.+.++..+|.+.++.
T Consensus 133 ve~ii~~~r~-------~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 133 VEKIIEEFRE-------KLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred HHHHHHHHHH-------HHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 2222222211 111111111 16777888889999999999999988874
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=60.37 E-value=1.8e+02 Score=28.57 Aligned_cols=29 Identities=14% Similarity=-0.153 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043144 292 ITHNIILRSMCSTGRWMDAERLLAEMVLK 320 (580)
Q Consensus 292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (580)
..|..+.+.-.-.|+.+-|.-.-.+....
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 34555555555566666555555555443
No 402
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=2.4e+02 Score=29.96 Aligned_cols=121 Identities=24% Similarity=0.232 Sum_probs=73.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144 440 GLSKVGKTEQAMKLLEEMRTKGLKPDTI--TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT 517 (580)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 517 (580)
++..-|+-++|..+.++|.... .|-.. -.-.++.+|+-.|+..-..+++.-... ++..|+.-+..+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecCh
Confidence 4456677788888888887542 22111 123455677778887766666665443 3344555555555566666777
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 518 YRAIDILADMVTRSCKPTEA--TYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 518 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+....+..-+.+. ..|... +-..|.-+|.-.|. .+|..+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7777777665544 344433 33445555666665 568888888765
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.88 E-value=53 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 498 RPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 498 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
.|+..+|..++.++...|+.++|....+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543
No 404
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.64 E-value=2.1e+02 Score=29.28 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHH-------hCC-------------CCCChhhHHH---HHHHHHhcCChHHHHHHH
Q 043144 86 ESNNHLRRLVRNGELEEGFKFLESMV-------YHG-------------DIPDIIPCTS---LIRGFCKVGKTRKATRVM 142 (580)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-------------~~~~~~~~~~---l~~~~~~~g~~~~A~~~~ 142 (580)
+...+...+..+|+.+-|..+.++.+ .-. .+.|..-|.+ -+..+.+.|.+..|.++.
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 44667778888999888877766653 111 1122222222 234456778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHc
Q 043144 143 EIVEDSGAVPDVITYNVLISGYC-RLGEIDNALQVLERM 180 (580)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 180 (580)
+.+....+..|+.....+|+.|+ +..+++--+++++..
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88877775557777777777775 356666666666654
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.53 E-value=42 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.123 Sum_probs=10.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 043144 543 IEGIAYEGLAKEALDLLNQLC 563 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~ 563 (580)
+......|++++|.+.+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334444455555555555544
No 406
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=1.6e+02 Score=27.61 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH----
Q 043144 327 VTFNILINFLCRKGLLGRAIDILEKMPK----HGCTPNSLSYNPVLHG-FCKEKKMDRAIEYLEIMVSRGCYPDIV---- 397 (580)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 397 (580)
..+......|++.|+.+.|.+.+.+..+ .|...|...+..-+.. |..+.-+.+-++..+.+.+.|...+-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3445556667777777777666654433 3444454443332222 222222444455555555555443322
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQLSN 424 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 424 (580)
+|..+- +....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333332 2344567777777766543
No 407
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.02 E-value=2.6e+02 Score=29.78 Aligned_cols=310 Identities=10% Similarity=0.003 Sum_probs=149.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChhHHH
Q 043144 129 FCKVGKTRKATRVMEIVEDSGAVP-DVITYNVLISGYCRLGEIDNALQVLERMSVAP-DVVTYNTILRTLCDSGKLNLAM 206 (580)
Q Consensus 129 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 206 (580)
..+.|++..+.++...+... +. ....|..|... .....+++....+++-+.-| ....-......+.+.+++...+
T Consensus 43 a~~~g~~~~~~~~~~~l~d~--pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY--PLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC--CcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 47788888888887776432 22 12222222221 12335667777777653222 2333444555666777777766
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH--HHHHHhhh
Q 043144 207 EVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAI--KFLNDMPS 284 (580)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~ 284 (580)
..+. ..+.+...-...+.+....|+.++|......+=..|. ..+...+.++..+.+.|.+.... +=+..+..
T Consensus 120 ~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~ 193 (644)
T PRK11619 120 AFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMK 193 (644)
T ss_pred HhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6321 1234555556677777888888777666665543332 23555666666666555433221 11122222
Q ss_pred CCCCCCHHHHHHHHHHH-----------H-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHH
Q 043144 285 YGCQPNVITHNIILRSM-----------C-STGRWMDAERLLAEMVLKGCSPSVVTFNILINFL--CRKGLLGRAIDILE 350 (580)
Q Consensus 285 ~~~~~~~~~~~~ll~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~ 350 (580)
.| +...-..+...+ . -..+...+..++.. .+++...-..++.++ ....+.+.|..++.
T Consensus 194 ~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~ 265 (644)
T PRK11619 194 AG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIP 265 (644)
T ss_pred CC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 11 111111111111 0 00111111111111 112221111111111 13445677888887
Q ss_pred HhhhCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043144 351 KMPKHG-CTPNS--LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC 427 (580)
Q Consensus 351 ~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 427 (580)
...... ..+.. ..+..+....+..+..++|...+....... .+......-+......++++.+...+..|.....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~ 343 (644)
T PRK11619 266 SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK 343 (644)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc
Confidence 764432 22111 223333333333333556666666544321 2344444445555578888888888877754321
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 428 SPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 428 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
....-.-=+..++...|+.++|...|+.+.
T Consensus 344 -~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 344 -EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred -cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 122222334556566788888888888864
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.54 E-value=76 Score=28.81 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144 505 NSIMLGLCKARQTYRAIDILADMVT----RSC-KPTEATYTILIEGIAYEGLAKEALDLLNQL 562 (580)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
..++.-|...|++++|.++|+.+.. .|+ .+...+...+..++.+.|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566677788888888888877752 232 233455666777777788877776655444
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.35 E-value=1.3e+02 Score=27.09 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHH---hCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 043144 482 VDEAIKLFHDLE---RLGVRPNVITYNSIM-----LGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 482 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 529 (580)
.+.|.+.|+++. +..++|...++..|+ ..|-..|+.++|.++.+++.+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355666666543 111344444433333 234457888888887777654
No 410
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.79 E-value=1.4e+02 Score=26.40 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 043144 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP---DTITY--SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVIT 503 (580)
Q Consensus 429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 503 (580)
+...-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-+......|++++|.+....+...-+..|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 4444455655555544445555555543 224443 33333 2345566788888888888777642222334322
Q ss_pred HH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 043144 504 YN-----SIMLGLCKARQTYRAIDILADMV 528 (580)
Q Consensus 504 ~~-----~l~~~~~~~g~~~~A~~~~~~~~ 528 (580)
+- .++. ..+.|..++|+++.+.-+
T Consensus 102 ~F~Lq~q~lIE-liR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIE-LIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHH-HHHhhhHHHHHHHHHHHc
Confidence 22 2222 346677777777776654
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.49 E-value=28 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 043144 260 NVLVNGICKEGRLDEAIKFLNDMP 283 (580)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~ 283 (580)
-..|.++...|++++|.+++.++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345556666666666666555554
No 412
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.80 E-value=1.6e+02 Score=26.54 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=11.8
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q 043144 438 IDGLSKVGKTEQAMKLLEEM 457 (580)
Q Consensus 438 ~~~~~~~g~~~~A~~~~~~m 457 (580)
..-+.+.|++.+|...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreA 204 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREA 204 (329)
T ss_pred hhhhhhhccHHHHHHHHHHH
Confidence 33445566666666666654
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.56 E-value=1e+02 Score=24.41 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 519 RAIDILADMVTRSCKPT-EATYTILIEGIAYEGLAKEALDLLNQ 561 (580)
Q Consensus 519 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.+.++|+.|..+++... ...|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666654433 44555666666666777777666654
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.33 E-value=1.5e+02 Score=26.37 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144 364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK 443 (580)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 443 (580)
...-+..|...-++.-|-...+++.+ | ..+-. .+--|.+..+..--.++.+-....+++-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 44445666666666666655555542 2 12222 2234556666555556666566666555555555544 457
Q ss_pred CCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 444 VGKTEQAMKLLEEMRTK------------GLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL 511 (580)
Q Consensus 444 ~g~~~~A~~~~~~m~~~------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (580)
.|+...|+..++.-..- .-.|.+.....++..|.. +++++|.+++.++-+.|..|.. ..+.+.+++
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 89999999988876432 124777777777776654 5899999999999999988643 334454443
No 415
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.08 E-value=3.4e+02 Score=30.29 Aligned_cols=29 Identities=3% Similarity=0.022 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYH 113 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (580)
+.|..+-+++.....++.|+..|++....
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRES 504 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhc
Confidence 45666778888889999999999988654
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.78 E-value=2.1e+02 Score=27.77 Aligned_cols=142 Identities=12% Similarity=0.069 Sum_probs=73.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043144 94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNA 173 (580)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 173 (580)
....++++.-..++++ .|-.+.+...+...+..+|+.+.|.+++++..-.- ..++......+.....-..+
T Consensus 20 ~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~ 90 (360)
T PF04910_consen 20 AVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC 90 (360)
T ss_pred HHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc
Confidence 3344455444444422 34456667777777788888888877777654210 00000000000000000000
Q ss_pred HHHHHHc--CCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHhHHHHHHHHH
Q 043144 174 LQVLERM--SVAPDVVTYN---TILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC-KESGVGQAMKLLDEM 247 (580)
Q Consensus 174 ~~~~~~~--~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 247 (580)
++ ....|...|. ..+..+.+.|.+..|+++.+-+...+...|.......|+.|+ +.++++--+++.+..
T Consensus 91 -----rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 91 -----RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred -----ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 11 1122333333 345566778888888888777777665556666666666654 566676666666654
Q ss_pred HH
Q 043144 248 RN 249 (580)
Q Consensus 248 ~~ 249 (580)
..
T Consensus 166 ~~ 167 (360)
T PF04910_consen 166 LA 167 (360)
T ss_pred hh
Confidence 43
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.71 E-value=2.3e+02 Score=28.10 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=34.5
Q ss_pred HhcCChhHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHhHH
Q 043144 165 CRLGEIDNALQVLERMSVAPDVVT--YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI--TYTILIEATCKESGVGQA 240 (580)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A 240 (580)
++.|+.+-+..+++. +..++... ..+.+...+..|+.+- .+.+++.|..|+.. .....+...+..|+.+.+
T Consensus 10 ~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 456776665555543 43443321 2334444555666543 33344455444322 112233444556666554
Q ss_pred HHHH
Q 043144 241 MKLL 244 (580)
Q Consensus 241 ~~~~ 244 (580)
..++
T Consensus 85 ~~Ll 88 (413)
T PHA02875 85 EELL 88 (413)
T ss_pred HHHH
Confidence 4444
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.50 E-value=13 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144 128 GFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG 163 (580)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (580)
...+.|.-..|..+|+.|+++|.|||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345667778899999999999988876 6666654
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.23 E-value=34 Score=18.51 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144 134 KTRKATRVMEIVEDSGAVPDVITYNVL 160 (580)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 160 (580)
+.+.|..+|+++...- +.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 3444445555444432 2334444433
No 420
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=1.4e+02 Score=28.28 Aligned_cols=86 Identities=16% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC---CCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHH-HHH
Q 043144 90 HLRRLVRNGELEEGFKFLESMVYH---GDIPDIIPCT--SLIRGFCKVGKTRKATRVMEIVED-----SGAVPDVI-TYN 158 (580)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~ 158 (580)
++....+.++.++|+++++++.+. -..|+...+. ..++++...||..++.+.++...+ .++++++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Q ss_pred HHHHHHHh-cCChhHHHH
Q 043144 159 VLISGYCR-LGEIDNALQ 175 (580)
Q Consensus 159 ~l~~~~~~-~g~~~~A~~ 175 (580)
.+..-|.+ .|++.....
T Consensus 161 ~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHhHHHHHH
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.32 E-value=44 Score=21.03 Aligned_cols=30 Identities=3% Similarity=0.001 Sum_probs=13.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043144 513 KARQTYRAIDILADMVTRSCKPTEATYTIL 542 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 542 (580)
+.|-.+++...+++|.+.|+.-++..+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444455555444444444444433
No 422
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.16 E-value=2.6e+02 Score=28.03 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=66.9
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh-cCChhHHHHHHHHc----CCCCCc-----chH
Q 043144 124 SLIRGFCKVG--KTRKATRVMEIVEDSGAVPD--VITYNVLISGYCR-LGEIDNALQVLERM----SVAPDV-----VTY 189 (580)
Q Consensus 124 ~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-~g~~~~A~~~~~~~----~~~~~~-----~~~ 189 (580)
.++..+...| +...+++.++.+....++.- ..+...|+..+.+ ..+++-|...+++. ..-|+. .++
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 3445555666 66777777777766553322 2233444444433 56677777777665 111221 245
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCC-C--ChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144 190 NTILRTLCDSG-KLNLAMEVLHKQLEKECY-P--DVITYTILIEATCKESGVGQAMKLL 244 (580)
Q Consensus 190 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~ 244 (580)
..|...|.... .+..+..++++.++..-. | .......|+....-..++..|.+++
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 66666676655 677777777777654211 1 1112233555556667777777664
No 423
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.97 E-value=3.5e+02 Score=29.44 Aligned_cols=267 Identities=15% Similarity=0.147 Sum_probs=129.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 043144 124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVI--TYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGK 201 (580)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (580)
.+-..|...|+++.|+++-+. +|+.. ++..-.+.|.+.+++..|-+++.++ ...+..+.--+....+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t-----~~~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET-----LSSFEEVALKFLEINQ 431 (911)
T ss_pred HHHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-----hhhHHHHHHHHHhcCC
Confidence 345667888888888877533 23332 3333456677778888888888776 2234444444444555
Q ss_pred hhHHHHHHHHHHhCCCCCChhh-----HHHHHHHHHh-cCCHh----HHHHHHHHHHHc---------CCCCCHhHHHHH
Q 043144 202 LNLAMEVLHKQLEKECYPDVIT-----YTILIEATCK-ESGVG----QAMKLLDEMRNK---------GCIPDVVTYNVL 262 (580)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~-~g~~~----~A~~~~~~~~~~---------~~~~~~~~~~~l 262 (580)
.+.-..++.+-++ +++|...+ .+.++..|.. .++++ ++..-++.-.+. ....+.....+.
T Consensus 432 ~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 432 ERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Confidence 5532333333222 23333222 2223333332 22222 232222211110 001122223334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 043144 263 VNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLL 342 (580)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 342 (580)
...+...|+.++...+-.-+.+ |..++.-+.+.+.+++|.+++..- .+...+....-.. ....+
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~------~~~el~yk~ap~L-i~~~p 574 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ------RNPELFYKYAPEL-ITHSP 574 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc------cchhhHHHhhhHH-HhcCc
Confidence 4455567777776665554442 556677778888888888776543 1222222221111 12344
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144 343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE---KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 419 (580)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 419 (580)
......+....+. . .+.....++..+.+. .....+....+-....-...+...++.++..|++..+ +.....+
T Consensus 575 ~~tV~~wm~~~d~--~-~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~l 650 (911)
T KOG2034|consen 575 KETVSAWMAQKDL--D-PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLYL 650 (911)
T ss_pred HHHHHHHHHcccc--C-chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHHH
Confidence 4444554444433 1 223333444444443 2344555555554443334477788888888776654 3344444
Q ss_pred HHH
Q 043144 420 NQL 422 (580)
Q Consensus 420 ~~~ 422 (580)
+..
T Consensus 651 e~~ 653 (911)
T KOG2034|consen 651 EII 653 (911)
T ss_pred HHH
Confidence 433
No 424
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.32 E-value=25 Score=32.88 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=81.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHH
Q 043144 406 LCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI-TYSSLVGGLSREGKVDE 484 (580)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 484 (580)
....|.++.|++.|...++.+ ++....|.--...+.+.+++..|++=++...+. .||.. -|-.--.+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 445788999999999988876 455666777778888999999999988887764 44432 34333445567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT 529 (580)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 529 (580)
|...|....+.+..+....|. -...-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHHHH
Confidence 999999998887766554432 2233344444554455555443
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.24 E-value=4e+02 Score=30.09 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 043144 224 YTILIEATCKESGVGQAMKLLDEMRNKGCIPD----VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR 299 (580)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 299 (580)
|..+++.+-+.+..+.+.++-..+++.- +++ ..+++.+.+.....|.+-+|...+-.-... ..-......++.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvi 1062 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHH
Confidence 4556666666777777777766665541 111 234566666667777777776655443221 111123444455
Q ss_pred HHHhcCChH
Q 043144 300 SMCSTGRWM 308 (580)
Q Consensus 300 ~~~~~~~~~ 308 (580)
.++..|.++
T Consensus 1063 vLfecg~l~ 1071 (1480)
T KOG4521|consen 1063 VLFECGELE 1071 (1480)
T ss_pred HHHhccchH
Confidence 555555543
No 426
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.95 E-value=2.6e+02 Score=27.49 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYH------GDIP-DIIPCTSLIRGFCKVGKTRKATRVMEIVE 146 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (580)
++...|++.++-.|++..|+++++.+--. .+++ ...++..++=+|.-.+++.+|.++|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999998876211 1222 33456667777888889999999887765
No 427
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.93 E-value=42 Score=19.02 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144 516 QTYRAIDILADMVTRSCKPTEATYTILI 543 (580)
Q Consensus 516 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
.++.|..+|++.+.. .|++.+|...+
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 456677777776653 46666665543
No 428
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.90 E-value=1e+02 Score=22.67 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=17.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144 116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDS 148 (580)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 148 (580)
|.|......+...+...|++++|.+.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455555555566666666666555555544
No 429
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.41 E-value=4e+02 Score=29.38 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144 369 HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 408 (580)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 408 (580)
-.|......+-++.+++.+....-.++....+.++..|+.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3455666777788888888766555666677777776654
No 430
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.87 E-value=1e+02 Score=26.62 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144 463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERL 495 (580)
Q Consensus 463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (580)
.|+..+|..++.++...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666666666666666666666666554
No 431
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.75 E-value=1.9e+02 Score=25.53 Aligned_cols=29 Identities=7% Similarity=-0.173 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVTRS 531 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 531 (580)
..-.++....+.|++++|.+.|.+++..+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33345556667777777777777776553
No 432
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.22 E-value=2.9e+02 Score=27.37 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144 436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER 494 (580)
Q Consensus 436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (580)
.++.-|.-.|...+|..+++++--- +-.....+.+++.+.-+.|+-...+.++++.-.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3445555566666666665554210 111234455555555555555555555555443
No 433
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.96 E-value=3.9e+02 Score=28.85 Aligned_cols=371 Identities=11% Similarity=0.047 Sum_probs=177.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHc-CCCCCcchHHHHH
Q 043144 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR---LGEIDNALQVLERM-SVAPDVVTYNTIL 193 (580)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 193 (580)
+......|+..+.+.|++++-..--..|.+.- +..+..|...+..... .++..++..+|++. +...++..|...+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 44566778888888888876666555555543 5566666665544332 46667778888877 4445556666555
Q ss_pred HHHHh-------cCChhHHHHHHHHHHhCC-C--CCChhhHHHHHH---HHHhcCCHhHHHHHHHHHHHcCCCCCHhHH-
Q 043144 194 RTLCD-------SGKLNLAMEVLHKQLEKE-C--YPDVITYTILIE---ATCKESGVGQAMKLLDEMRNKGCIPDVVTY- 259 (580)
Q Consensus 194 ~~~~~-------~g~~~~A~~~~~~~~~~~-~--~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 259 (580)
..+.. .++++....+|++++..- . .-....|...+. .|...-..++...+|..-+..+...+...+
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~ 270 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWD 270 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 55443 356777777888776531 1 111222322222 233333335555666555554322111111
Q ss_pred -HHHH--HHH-HhcCCHHHHHH-------HHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 043144 260 -NVLV--NGI-CKEGRLDEAIK-------FLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVT 328 (580)
Q Consensus 260 -~~l~--~~~-~~~g~~~~A~~-------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 328 (580)
...- ..+ ....+.+.+.. .|++..+.. .+-...|..++.-+-..|+.-.....++++.... ..+...
T Consensus 271 ~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~-~~~~~~ 348 (881)
T KOG0128|consen 271 LSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM-VLDRAL 348 (881)
T ss_pred HHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc-cccHHH
Confidence 0010 000 11122233322 222332221 2333456677777777888777766777666542 223222
Q ss_pred HH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144 329 FN---ILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM-DRAIEYLEIMVSRGCYPDIVTYNTLLT 404 (580)
Q Consensus 329 ~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~li~ 404 (580)
|. ...+.- .+-.+.+...+.+..+. ++....+|...+-++.+.+.. ..-...+...+..++ ..++....
T Consensus 349 wi~y~~~~d~e--Lkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~----~l~~~~~~ 421 (881)
T KOG0128|consen 349 WIGYGVYLDTE--LKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV----ELHNDYLA 421 (881)
T ss_pred Hhhhhhhcccc--cccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH----HHHHHHHH
Confidence 21 111111 11122233333333332 222333444444444444442 223333443333222 12333333
Q ss_pred HHHhcCC-------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 043144 405 ALCKDGK-------------VDVAVEILNQLSNKHCSPVLITYNTVIDGLS-KVGKTEQAMKLLEEMRTKGLKPDTI-TY 469 (580)
Q Consensus 405 ~~~~~g~-------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~-~~ 469 (580)
...++++ ++.|...|.........+...+.......+. -.++.+.+..+++.....+.. +.. .|
T Consensus 422 ~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~W 500 (881)
T KOG0128|consen 422 YRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKW 500 (881)
T ss_pred HHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHH
Confidence 3333433 2233333333332211222222233333332 578899999999988766422 222 45
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144 470 SSLVGGLSREGKVDEAIKLFHDLERLGVRP 499 (580)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 499 (580)
...+..-...|+...+..+++.....-..|
T Consensus 501 le~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 501 LEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 555555566788888888777776543344
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.38 E-value=2.8e+02 Score=27.07 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043144 256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGC--QPNVITHNIILRSMCSTGRWMDAERLLAEMVLK 320 (580)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 320 (580)
...+.-+.+.|..+|+++.|++.|.+.+..-. ......|..+|..-.-.|+|.....+..+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34677888899999999999999988665321 122344556666666778888877777776654
No 435
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.00 E-value=2.4e+02 Score=26.09 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCChhhHHH-HHHHHHhcCCHhHHHHHHHHHHHcCC
Q 043144 186 VVTYNTILRTLCDSGKLNLAMEVLHKQLE----KECYPDVITYTI-LIEATCKESGVGQAMKLLDEMRNKGC 252 (580)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~ 252 (580)
..+|..++..|++.++.+.+.++.++... .|.+.|+..... +.-.|....-+++.++..+.+.++|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 45667777777777777777766655543 343333322211 11223333334555555666665553
No 436
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.66 E-value=75 Score=24.36 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 043144 189 YNTILRTLCDSGKLNLAMEVLHKQL 213 (580)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (580)
|..|+..|...|..++|++++.+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3444444444444444444444433
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.60 E-value=1.3e+02 Score=25.66 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHH
Q 043144 135 TRKATRVMEIVEDSGAVPDV-------ITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYN 190 (580)
Q Consensus 135 ~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 190 (580)
.+.|+.+++.+.+....|.. ..-...+..|++.|.+++|.+++++.--.|+.....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 35677777777664422211 111234456677788888888887772244444333
No 438
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.12 E-value=2.8e+02 Score=31.56 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=41.0
Q ss_pred HHhcCChHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--------CC--CCCcchHHHH
Q 043144 129 FCKVGKTRKATR------VMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--------SV--APDVVTYNTI 192 (580)
Q Consensus 129 ~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~--~~~~~~~~~l 192 (580)
....|.+.+|.+ ++......-.+.....|..|...+-+.|+.++|+..-.+. +. +.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334444444444 5543332222445556666666666677777776665443 11 1122334444
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 043144 193 LRTLCDSGKLNLAMEVLHKQL 213 (580)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~ 213 (580)
.......++...|...+.+..
T Consensus 1022 al~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred HHHHHhccCccchhhhHHHHH
Confidence 444444445555554444433
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.08 E-value=1.5e+02 Score=25.30 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 043144 262 LVNGICKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~ 284 (580)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567788888888888887765
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.56 E-value=58 Score=19.00 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 537 ATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
..|..++-.+...|++++|+.+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345667778889999999999944
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.36 E-value=1.2e+02 Score=22.15 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHH
Q 043144 410 GKVDVAVEILNQLS 423 (580)
Q Consensus 410 g~~~~A~~~~~~~~ 423 (580)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.25 E-value=3.1e+02 Score=30.90 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHc--CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----hHH
Q 043144 156 TYNVLISGYCRLGEIDNALQVLERM--SVAPD----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI----TYT 225 (580)
Q Consensus 156 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~ 225 (580)
-|...++.+-+.+-.|.+.++-..+ ..++| ..+++.+.+.....|.+.+|...+-.- ||.. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHH
Confidence 3555667777777777777776555 22333 234566666667777777775554321 3332 344
Q ss_pred HHHHHHHhcCCHhH------------HHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043144 226 ILIEATCKESGVGQ------------AMK-LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFL 279 (580)
Q Consensus 226 ~li~~~~~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 279 (580)
.++-..+.+|+++. ... +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 55555666665442 233 2222222222223345666666666777777665544
No 443
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.70 E-value=2.2e+02 Score=32.40 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=73.4
Q ss_pred HHHHHHcCChHHHHH------HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH-------HHhCCCCCCHHHH
Q 043144 91 LRRLVRNGELEEGFK------FLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEI-------VEDSGAVPDVITY 157 (580)
Q Consensus 91 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~ 157 (580)
.......|.+.+|.+ ++......-.++....|..+...+-+.|+.++|...-.. +.....+.+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455667776666 666444433445557788888889999999999876443 3333334445556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHc---------C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144 158 NVLISGYCRLGEIDNALQVLERM---------S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 158 ~~l~~~~~~~g~~~~A~~~~~~~---------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
..+...+...++...|...+.+. . .||...+++.+-..+...++++.|....+.+..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66655555666777777766654 1 222233344444444445666666666666554
No 444
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.82 E-value=1.4e+02 Score=31.02 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHH
Q 043144 88 NNHLRRLVRNGELEEGFKFLESMVYH--GDIPDIIPCTSLIRGFCKVGKTR------KATRVMEIVEDSGAVPDVITYNV 159 (580)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~ 159 (580)
-.++++|..+|++-.+.++++..+.. |...-...+|..++...+.|.++ .|.++++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 37899999999999999999998766 33333456788888888999874 3444444443 3446777777
Q ss_pred HHHHHH
Q 043144 160 LISGYC 165 (580)
Q Consensus 160 l~~~~~ 165 (580)
|+++-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 766543
No 445
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.09 E-value=93 Score=30.16 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYH--GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVE 146 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (580)
++...|++.+.-.|+++...+..+.+... |..|...+...+.=+|.-.|++.+|.++|-.+.
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777766656666655443 334443333455556666777777777776554
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.99 E-value=46 Score=30.76 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 260 NVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
+..|....+.||+++|+.++++.++.|
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344444444444444444444444444
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.74 E-value=50 Score=30.52 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043144 504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY 539 (580)
Q Consensus 504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 539 (580)
|+..|..-.+.||+++|+.+++++.+.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345566666666666666666666666544444443
No 448
>PRK09857 putative transposase; Provisional
Probab=42.08 E-value=2.2e+02 Score=26.70 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144 512 CKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK 570 (580)
Q Consensus 512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 570 (580)
...++.++-.++++.+.+. .++.......+++-+.+.|.-+++.++.++|...|+..+
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555555443 233344444566666666666677777777777776644
No 449
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.07 E-value=5e+02 Score=28.40 Aligned_cols=226 Identities=13% Similarity=0.085 Sum_probs=115.8
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCH-------hHHHHHHH-HHHhcCCHHHHHHHHHHhhhC----CCCCCHHHHHHHH
Q 043144 231 TCKESGVGQAMKLLDEMRNKGCIPDV-------VTYNVLVN-GICKEGRLDEAIKFLNDMPSY----GCQPNVITHNIIL 298 (580)
Q Consensus 231 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ll 298 (580)
.....++++|..+..++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44578889998888887654222221 13444433 345678888888877765542 2234455566667
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhH---HHH--HHHHHhcCCHHHH--HHHHHHhhhC---CCC---CCHhhHH
Q 043144 299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTF---NIL--INFLCRKGLLGRA--IDILEKMPKH---GCT---PNSLSYN 365 (580)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~~~a--~~~~~~~~~~---~~~---~~~~~~~ 365 (580)
.+..-.|++++|..+..+..+....-+...+ ..+ ...+...|+...+ ...|...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777789999998888777654222233322 222 2234456633322 2223222211 001 1122334
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 043144 366 PVLHGFCKE-KKMDRAIEYLEIMVSRGCYPDIV--TYNTLLTALCKDGKVDVAVEILNQLSNKHCSP----VLITYNTVI 438 (580)
Q Consensus 366 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~ 438 (580)
.+..++.+. +...++..-++-.......|-.. .+..|+......|++++|...++++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 12223333333222222222222 22367777888899999998888876543222 222212222
Q ss_pred H--HHHhCCCHHHHHHHHHH
Q 043144 439 D--GLSKVGKTEQAMKLLEE 456 (580)
Q Consensus 439 ~--~~~~~g~~~~A~~~~~~ 456 (580)
. .....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 22356777777666655
No 450
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.84 E-value=55 Score=28.90 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=48.4
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 043144 93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDV 154 (580)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 154 (580)
...+.|+.+.|.+++.+++.. .+.+...|..+...-.+.|+++.|.+.|++..+.+ ++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 455678888999999998876 56677788888888889999999999999988876 4443
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.97 E-value=1.8e+02 Score=23.03 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 043144 482 VDEAIKLFHDLERLGVRPN-VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT-EATYTILIEGIAYEGLAKEALDLL 559 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
++++.+.|.......-.|. ...|...+..+ ++..++|..|...++-.. ...|...+..+...|++.+|.+++
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred H
Q 043144 560 N 560 (580)
Q Consensus 560 ~ 560 (580)
+
T Consensus 123 ~ 123 (125)
T smart00777 123 Q 123 (125)
T ss_pred H
No 452
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.76 E-value=5.4e+02 Score=28.44 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=67.0
Q ss_pred hhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC--C-CChhhHHHHHHHHHhcCCH--hHHHHHH
Q 043144 170 IDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC--Y-PDVITYTILIEATCKESGV--GQAMKLL 244 (580)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~--~~A~~~~ 244 (580)
.++...++.+. .-|..|+..|...|..++|++++.+..+..- . .....+-.+++...+.+.- +-.++.-
T Consensus 494 vee~e~~L~k~------~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~ 567 (877)
T KOG2063|consen 494 VEEIETVLKKS------KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYA 567 (877)
T ss_pred hHHHHHHHHhc------ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHh
Confidence 45555555543 2367777777778888888887777766320 0 0111222244444444433 4444433
Q ss_pred HHHHHcCCCCCHhHHH------------HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 043144 245 DEMRNKGCIPDVVTYN------------VLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS 303 (580)
Q Consensus 245 ~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 303 (580)
+...+....-...++. .-+-.|+.....+-+..+++.+....-.++....+.++..|+.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3333321110000110 1223456777788888888888765545566666666666653
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.63 E-value=72 Score=31.56 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=22.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144 407 CKDGKVDVAVEILNQLSNKHCSPVLI-TYNTVIDGLSKVGKTEQAMKLLEEMRT 459 (580)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 459 (580)
...++++.|..++.++.+.+ |+.. .|..-..++.+.+++..|+.=+..+++
T Consensus 15 l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444555555555555443 3222 222222444455555555444444443
No 454
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.60 E-value=1e+02 Score=19.98 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=13.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 507 IMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 507 l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
+..++.+.|++++|.+..+.+++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334555666666666666666554
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.57 E-value=1.7e+02 Score=28.80 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHc
Q 043144 157 YNVLISGYCRLGEIDNALQVLERM 180 (580)
Q Consensus 157 ~~~l~~~~~~~g~~~~A~~~~~~~ 180 (580)
...|++.++-.||+..|+++++.+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc
Confidence 344555555666666666666655
No 456
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=3e+02 Score=25.41 Aligned_cols=95 Identities=18% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHH-HHHHhcCCHhHHHHHHHHHHHc----CCCCCHhHHH
Q 043144 190 NTILRTLCDSGKLNLAMEVLHKQ----LEKECYPDVITYTILI-EATCKESGVGQAMKLLDEMRNK----GCIPDVVTYN 260 (580)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 260 (580)
..++..+.+.|++.+|+.+.... .+.+-+|+..+...+- ..|..-.++.++..-+..++-. -++|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 35778888899999888765544 3334445444333222 3355555566555555444321 1344344333
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHhhh
Q 043144 261 VLVNGI--CKEGRLDEAIKFLNDMPS 284 (580)
Q Consensus 261 ~l~~~~--~~~g~~~~A~~~~~~~~~ 284 (580)
-|+++- |...++.-|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 444432 344566677777666543
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.03 E-value=1.5e+02 Score=30.77 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHcCChH------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 043144 85 FESNNHLRRLVRNGELE------EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYN 158 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 158 (580)
..+|..++...++|.++ .|.+.++++. ...|..+|..+..+-..--...-...++...+... -|
T Consensus 66 ~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~~s-------~n 135 (1117)
T COG5108 66 PMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALLCQASLNPTQRQLGLPVLHELIHRS-------AN 135 (1117)
T ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHHHHhhcChHhHHhccHHHHHHHHhh-------hh
Confidence 35677788888888763 2344444443 33466677777766555444444455555555432 12
Q ss_pred HHHHHHH--hcCChhHHHHHHHHcCC
Q 043144 159 VLISGYC--RLGEIDNALQVLERMSV 182 (580)
Q Consensus 159 ~l~~~~~--~~g~~~~A~~~~~~~~~ 182 (580)
.+++.++ ..=.+++..-+++++.+
T Consensus 136 gv~di~~~~~v~s~~ev~limd~l~i 161 (1117)
T COG5108 136 GVIDILMHESVFSPEEVKLIMDQLNI 161 (1117)
T ss_pred hHHHHHhhhccCCHHHHHHHHHhcCC
Confidence 2344333 23356777777777633
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.47 E-value=3.2e+02 Score=25.56 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER 494 (580)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 494 (580)
.++++.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555566666667666666666666666666777777776653
No 459
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.36 E-value=3.1e+02 Score=25.17 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=18.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 255 DVVTYNVLVNGICKEGRLDEAIKFLND 281 (580)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (580)
++.....+...|.+.|++.+|...|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 566777777788888888777766643
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.30 E-value=98 Score=19.46 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=22.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144 128 GFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162 (580)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 162 (580)
...+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34566666677777777777776666666555443
No 461
>PRK12356 glutaminase; Reviewed
Probab=39.17 E-value=3.4e+02 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcC
Q 043144 174 LQVLERMSVAPDVVTYNTILRTLCDSG 200 (580)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (580)
..++++++..|.-..||++.+.-...|
T Consensus 86 ~~V~~~VG~EPSG~~FNsi~~Le~~~g 112 (319)
T PRK12356 86 QAVREKIGADPTGLPFNSVIAIELHGG 112 (319)
T ss_pred HHHHHHhCCCCCCCCcchHHHhhccCC
Confidence 467788888888888888876544333
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.01 E-value=1.8e+02 Score=22.34 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144 122 CTSLIRGFCKVGKTRKATRVMEIVED 147 (580)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 147 (580)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555443
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.57 E-value=5.7e+02 Score=28.04 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=79.0
Q ss_pred HHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144 163 GYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK 242 (580)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 242 (580)
....+|+.+.|++.-.++ .|..+|..|+......|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 652 LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 345678888888877766 3667888888888888888888888877554 2333344556677777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144 243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 319 (580)
+.+.+..++ |.... .....-.|++++-..++...-.. + ..|. .....|.-++|.++.++...
T Consensus 720 m~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~n~g~~----~-layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIRN---DATGQ---FQNALYLGDVKERVKILENGGQL----P-LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHHhcCcc----c-HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 666554331 22221 11223357777777776654321 1 1121 12345666777777777655
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.83 E-value=2e+02 Score=22.72 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144 309 DAERLLAEMVLKGCSPS-VVTFNILINFLCRKGLLGRAIDILEK 351 (580)
Q Consensus 309 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (580)
.+..+|..|...|+-.. ...|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554333 23455566666666777777666654
No 465
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.71 E-value=3.5e+02 Score=25.82 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144 481 KVDEAIKLFHDLERLGVRPN----VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547 (580)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
-.+++..++..++.. -|+ ...|-+++......|.++..+.+|++++..|-.|-...-..+++++-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356788888888764 245 34677888888888888999999999998888887777777777764
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.55 E-value=4.2e+02 Score=25.96 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144 327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCT--PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVS 389 (580)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 389 (580)
..+.-+.+.|..+|+++.|.+.|.+...--.. .....|-.+|..-.-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35666777777788888888877775443111 1122233444444556777777666666554
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.26 E-value=2e+02 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=11.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 043144 437 VIDGLSKVGKTEQAMKLLEEM 457 (580)
Q Consensus 437 l~~~~~~~g~~~~A~~~~~~m 457 (580)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555555554
No 468
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.62 E-value=77 Score=28.05 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=33.0
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144 476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR 530 (580)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 530 (580)
..+.++.+.+.+++.++...-++ ....|..+...-.+.|+.+.|.+-|++.++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34556666666666666654333 4555666666666666666666666666654
No 469
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.08 E-value=4.4e+02 Score=25.80 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=74.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCChhhHH--------HHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHH
Q 043144 92 RRLVRNGELEEGFKFLESMVYHGDIPDIIPCT--------SLIRGFCKVGKTRKATRVMEIVEDS-----GAVPDVITYN 158 (580)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~ 158 (580)
--+..+.++.+|..+-+..+..-..-+.+++. .+-..|-..|+...-...+...... +...-....|
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 33445678888888777665432223333333 3333455667766655555544332 1122334567
Q ss_pred HHHHHHHhcCChhHHHHHHHHcCCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144 159 VLISGYCRLGEIDNALQVLERMSVAPDVV------TYNTILRTLCDSGKLNLAMEVLHKQLEKE 216 (580)
Q Consensus 159 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (580)
.|++.|...+.++.|-.+..+...|.... -...++...+-.+++..|.+.|..++...
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 77888888899999998888874322111 12344555666788888888888887764
No 470
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=33.67 E-value=3.6e+02 Score=27.10 Aligned_cols=69 Identities=26% Similarity=0.374 Sum_probs=44.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhH----HHHHHHHHHhcC-CHH
Q 043144 199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVT----YNVLVNGICKEG-RLD 273 (580)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g-~~~ 273 (580)
..++++|++..++..+.+-+.++ |-+..|.++|.++.+.|+.||..+ ....+.+|+=.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 45778888888887776633222 334567788888888888887665 223344566666 566
Q ss_pred HHHHHHH
Q 043144 274 EAIKFLN 280 (580)
Q Consensus 274 ~A~~~~~ 280 (580)
++.++..
T Consensus 274 e~~~lr~ 280 (545)
T TIGR01228 274 DADKLRQ 280 (545)
T ss_pred HHHHHHH
Confidence 6666543
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.65 E-value=1.5e+02 Score=19.94 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=7.1
Q ss_pred hcCChHHHHHHHHHHH
Q 043144 408 KDGKVDVAVEILNQLS 423 (580)
Q Consensus 408 ~~g~~~~A~~~~~~~~ 423 (580)
..|++=+|-++++.+=
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3444555555554443
No 472
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.40 E-value=4.1e+02 Score=24.92 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144 207 EVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 249 (580)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 249 (580)
++++.+...++.|.-.++..+.-.+.+.=.+...+.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444555555555555555555555555555555555543
No 473
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.28 E-value=2.2e+02 Score=23.30 Aligned_cols=45 Identities=22% Similarity=0.114 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043144 366 PVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 410 (580)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 410 (580)
.++..+...++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444555566665555554444444444444444444
No 474
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.84 E-value=2.4e+02 Score=23.08 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=18.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144 458 RTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP 499 (580)
Q Consensus 458 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 499 (580)
.+.|++++.. -..++..+...++.-.|.++++.+.+.++..
T Consensus 13 k~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 13 KEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 3444444332 2223444444444455555555555444433
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.43 E-value=4.4e+02 Score=24.97 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCCCCCC----HH
Q 043144 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRT----KGLKPDTITYSSLV-GGLSREGKVDEAIKLFHDLERLGVRPN----VI 502 (580)
Q Consensus 432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~ 502 (580)
..+.....-|++.|+-+.|++.+.+..+ .|.+.|...+..-+ -.|....-+.+-++..+.+.+.|-..+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4456667778888888888887766543 35566655433222 223333334555555555666555443 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144 503 TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545 (580)
Q Consensus 503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
+|..+- |....++.+|-.+|-+.+..--....-+|..++.-
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Y 225 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRY 225 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHHH
Confidence 555542 34556777887777766543212233445555443
No 476
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=5.8e+02 Score=26.36 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 043144 369 HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC-KDGKVDVAVEILNQLS 423 (580)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~ 423 (580)
..+.+.|-+..|.++.+-+.+..+.-|+.....+|+.|+ +..++.--+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455666666666666655544445555555555543 4445555555555543
No 477
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.22 E-value=3.7e+02 Score=23.95 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=8.7
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 043144 193 LRTLCDSGKLNLAMEVLHK 211 (580)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~ 211 (580)
|......|+.+.|++....
T Consensus 71 Ir~~I~~G~Ie~Aie~in~ 89 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQ 89 (228)
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 3334445555555444443
No 478
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=2.3e+02 Score=26.79 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144 405 ALCKDGKVDVAVEILNQLSNKHC-SP--VLITYNTVIDGLSKVGKTEQAMKLLEEMR 458 (580)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 458 (580)
-|.+..++..|...|..-.+... .| +...|+.-..+-...|++..|+.=....+
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555443321 12 23334444444444455555444444443
No 479
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.61 E-value=5e+02 Score=25.04 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=13.5
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 043144 301 MCSTGRWMDAERLLAEMVL 319 (580)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~~ 319 (580)
|...++++.|..+|...+-
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 4456778888888877764
No 480
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.34 E-value=8.4e+02 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.459 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHhhh
Q 043144 259 YNVLVNGICKEG--RLDEAIKFLNDMPS 284 (580)
Q Consensus 259 ~~~l~~~~~~~g--~~~~A~~~~~~~~~ 284 (580)
...++.+|.+.+ ++++|+....++.+
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 345555666555 56666666665554
No 481
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.29 E-value=2.2e+02 Score=20.83 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=7.5
Q ss_pred cCChHHHHHHHHHHH
Q 043144 132 VGKTRKATRVMEIVE 146 (580)
Q Consensus 132 ~g~~~~A~~~~~~~~ 146 (580)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 345555555555544
No 482
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.23 E-value=1.3e+02 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144 134 KTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL 167 (580)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (580)
+.+.|..++..+.... ..++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 5567777777776544 66778888877766543
No 483
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.15 E-value=7.2e+02 Score=26.75 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHH
Q 043144 447 TEQAMKLLEEMR-TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG---VR----------PNVITYNSIMLGLC 512 (580)
Q Consensus 447 ~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----------~~~~~~~~l~~~~~ 512 (580)
.++....+.... ..|+..+...+..++... .|++..++.+++++...+ +. .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 455555565544 347777777777776554 699999999998876533 11 12223344454443
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC
Q 043144 513 KARQTYRAIDILADMVTRSCKP 534 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~~ 534 (580)
.++...++.+++++...|..+
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCH
Confidence 477788888888887776443
No 484
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.02 E-value=4.1e+02 Score=23.89 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=35.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHhHHHHHHHHHHH
Q 043144 191 TILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK-ESGVGQAMKLLDEMRN 249 (580)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~ 249 (580)
.+++..-+.|+++++...+.++...+...+..--+.+-.+|-. -|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566777788888888888888877666666555555554432 3444555666655543
No 485
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.48 E-value=1.7e+02 Score=27.23 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144 430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSS-LVGGLSREGKVDEAIKLFHDLERLGV 497 (580)
Q Consensus 430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~ 497 (580)
|+..|...+....+.|.+.+.-.++.+..... +.|+..|-. ...-+...++++.+..+|....+.+.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 33444444433334444555555555555442 223444432 22334445555555555555555443
No 486
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.45 E-value=4.8e+02 Score=24.47 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHH-HhhhCCCCCCHh----hHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043144 338 RKGLLGRAIDILE-KMPKHGCTPNSL----SYNPVLHGFCKEKKMD-RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 411 (580)
Q Consensus 338 ~~g~~~~a~~~~~-~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 411 (580)
+...+++...... +|.+.+++ ++. .|..+|++---+++-+ -|.+.++ ...+|..|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nlP-e~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLP-ETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCC-CceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCCh
Confidence 3344555554443 45554443 443 4666665543332211 1222222 23357778888888887
Q ss_pred hHHHH
Q 043144 412 VDVAV 416 (580)
Q Consensus 412 ~~~A~ 416 (580)
.+..+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 66543
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.17 E-value=4.7e+02 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 043144 398 TYNTLLTALCKDGKVDVAVEILNQ 421 (580)
Q Consensus 398 ~~~~li~~~~~~g~~~~A~~~~~~ 421 (580)
.+..+..-|++.++.+.+.+...+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 445555555555555555544443
No 488
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.07 E-value=2.7e+02 Score=21.40 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144 253 IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG 286 (580)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (580)
.||...|-.|.. .+.|-.+++...+.++...|
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345555544432 34555555555555554433
No 489
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=28.84 E-value=5.9e+02 Score=25.34 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144 505 NSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK 569 (580)
Q Consensus 505 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 569 (580)
..|+.-|...|+..+|...++++- ..+-..+..+..++.+..+.|+-+....+++.....|...
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT 576 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLIT 576 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCcee
Confidence 345555666666666666665541 1111224455566666666666656666666665555543
No 490
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.81 E-value=2.9e+02 Score=21.73 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHc--------CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144 153 DVITYNVLISGYCRLGEIDNALQVLERM--------SVAPD-----VVTYNTILRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 153 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
|..++..|..++...|++++++.--+.. ....| ..+..+-..++-..|+.++|+..|+...+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 491
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=28.66 E-value=3.3e+02 Score=22.29 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144 399 YNTLLTALCKDGKVDVAVEILNQLSNKH-----CSPVLITYNTVIDGLSKVGK-TEQAMKLLEEMRTKGLKPDTITYSSL 472 (580)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l 472 (580)
.+.++.-....+++.-...+++.+.... -..+..+|..++.+..+..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444554444444442111 01222334444444433322 22333444444443444444444444
Q ss_pred HHHHH
Q 043144 473 VGGLS 477 (580)
Q Consensus 473 ~~~~~ 477 (580)
+.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 44443
No 492
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.60 E-value=6.6e+02 Score=25.82 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHcCCCCC-cch---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144 158 NVLISGYCRLGEIDNALQVLERMSVAPD-VVT---YNTILRTLCDSGKLNLAMEVLHKQLE 214 (580)
Q Consensus 158 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (580)
..++.-|.+.+++++|..++..|..... ... .+.+...+.+..--++....++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4577789999999999999998843211 222 33344444444333344444444443
No 493
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.03 E-value=1.8e+02 Score=27.17 Aligned_cols=73 Identities=1% Similarity=-0.146 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144 85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTS-LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV 159 (580)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 159 (580)
..|...+.-..+.|-+.+.-.+|.++++. .|.|+..|.. -..-+.-.++++.++.+|......+ +.++..|..
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~e 181 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHH
Confidence 45555555555666666666666666665 4555555543 2223445566666666666655544 444555543
No 494
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.43 E-value=5.5e+02 Score=24.50 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144 447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGL------SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRA 520 (580)
Q Consensus 447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 520 (580)
++++..++++....+ .|.+......|.++ ...-+|.....+|+.+....+.|-+..-..+ +.....-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAV--Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAV--ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHH--HHHHhhhHHhH
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144 521 IDILADMVTR-SCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS 564 (580)
Q Consensus 521 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+...+-+... .+.--...+..-...+.+.|+.++|...|++.+.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
No 495
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=27.28 E-value=9e+02 Score=26.92 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR-SCKPTEATYTILIEGIAYEGLAKEALDLLN 560 (580)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
.+.-.+.|.++...--..|..++..-..-+...|++-.|.+++.++.+. +-.++...|..++..+...|--. -..+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H-~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNH-LATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchH-hHHHHh
Confidence 3444555555543211235555555555666778888898888888763 44566777777777777776543 233444
Q ss_pred HHH
Q 043144 561 QLC 563 (580)
Q Consensus 561 ~~~ 563 (580)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 443
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.20 E-value=2.1e+02 Score=19.54 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144 465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL 511 (580)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (580)
....++.++..+++..-+++++..+.++.+.|. .+..+|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 334445555555555555555555555554442 2344444333333
No 497
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.06 E-value=8.6e+02 Score=26.62 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHH
Q 043144 447 TEQAMKLLEEMR-TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG---V----------RPNVITYNSIMLGLC 512 (580)
Q Consensus 447 ~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~ 512 (580)
.++..+.+++.. ..++..+......++ ....|++..|+.+++++...+ + ..+...+..++.++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLA--RAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 456666666654 346666666665543 345789999999988765332 1 12223334444433
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 043144 513 KARQTYRAIDILADMVTRSCK 533 (580)
Q Consensus 513 ~~g~~~~A~~~~~~~~~~~~~ 533 (580)
..|+..+++..++++...|+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 347777777777777766543
No 498
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.66 E-value=6.8e+02 Score=25.31 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=70.4
Q ss_pred HHHHHHhcC--ChhHHHHHHHHc-CCCCC----cchHHHHHHHH-HhcCChhHHHHHHHHHHhCC-CCCCh-----hhHH
Q 043144 160 LISGYCRLG--EIDNALQVLERM-SVAPD----VVTYNTILRTL-CDSGKLNLAMEVLHKQLEKE-CYPDV-----ITYT 225 (580)
Q Consensus 160 l~~~~~~~g--~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~-~~~~~-----~~~~ 225 (580)
+...+...| ++.++++.++.. ...|. +.+.-.|+..+ .-+.+++.|..-+++..... .-|+. .++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 455566666 667787777766 33332 22334444443 33677888888887765431 12332 2456
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHhHH-----HHHHHHHHhcCCHHHHHHHHH
Q 043144 226 ILIEATCKES-GVGQAMKLLDEMRNKGCIPDVVTY-----NVLVNGICKEGRLDEAIKFLN 280 (580)
Q Consensus 226 ~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~ 280 (580)
.|...|.... .+..+..++....+.. .+...| ..|++...-..++..|.+++.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 6667777655 7778888888777642 122233 235566666777888877743
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.54 E-value=5.8e+02 Score=24.47 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144 446 KTEQAMKLLEEMRTKGLKPDT----ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512 (580)
Q Consensus 446 ~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (580)
-.++.+.++++++.. -|+. .-|.+++......|.++.++.+|++++..|..|-...-..++..+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456888899998875 4564 3577888888999999999999999999998887766666666544
No 500
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=25.46 E-value=2.2e+02 Score=20.57 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043144 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE 549 (580)
Q Consensus 499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
|+......++..+. .++++++...+.++...|+++ ......+.+.....
T Consensus 3 p~~~~i~~i~~~~~-~~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCL-NGDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHH-HTCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 45556666776654 479999999999999887554 44556666666665
Done!